Citrus Sinensis ID: 002896

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------87
Protein Sequence
MVLPNLKISLVIFSLFFLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEIIRQRMVLMMSTALEKVDKEVYTKLIYLLEKSLQSRNFIRHSQVR
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEccccccEEEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccEEEEcccccccccccccEEEccccccEEcccccccccccccEEEccccEEEEcccccccccccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccEEcccccHHHHcccccccccccccEEEEcccccccccccccEEEccccccccccccccccccccccEEcccccccccccccccccccccEEEccccEEcccccccccccccccEEEccccEEEEccccccccccccccccccccccEEEccccccccccccEEcccccccccccHHHcccccccEEEccccEEEEcccccccccccccEEEcccccccccccccHHccccccccccccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEccccccccccccHHHHccccccccccccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccHHHHcccccccccccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEccccEEEEEEccccEEEEEEEEccccEEEEcccHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccHccccccccccccccccEEEEEEcccccccEEEEEEEcccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHHcccccccEEEcccccccccccccccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEcEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcHccccEEEcccccccccccHHHHHccccEEEEEcccccccccccccccccccHHHHHcccccccccccccccccccccccccHHHHEHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccccHHHccccccccEEEEEEccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MVLPNLKISLVIFSLFFLIlfpvldfplivysdsTEEVHALLKWKTSlqnhdkgsllpswtlnnatkispcawfgihcnhvgrvnsinltnvnqifgiippqignisklkyldlssnsfsgtippqignlSMLKFLYLSAnqfsgrippqighLSYIEALHLFKnqlsgpiphevgglsslnelaltsnflkgsippslgnltNLAILYLHnnslsgsipseignlkslsslalgnnklcgsiplflgnltnldtlylrnnsfsssipseignlkslSILElgenrlngsiplslgnltnldtLYLYTNSlsgsipseignlkslsgleladnelsssiphylgnlTNLAAFYLYKnslsgsipseignlkslsnldlsenklsgsiphslgnlTNLAILYLHSNTLLGSIPREIGNLKSLFElqlgdnklsnsishslgnltHMTLLALYDnalsgvipeeLGNLVKLTMLtlsdnqlqgsipnlrnlTNLIRLRLNRNhltcnisesfgihpkltfidlshnnfygqissdwgkcpnlgtfdvsvnniigslppeigdssqlhvIDLSanhiigkipseiGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLdlssnrlsnsiprsLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHlseldlshnflgkeipsqICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIdisynelhgpipnstaFSDALMEALQgneglcgdikgfqsckaskshkpasrkIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQtlqssprgtrgfLSVLTFEGKIVYEEIIRQRMVLMMSTALEKVDKEVYTKLIYLLEKSLQSRNFIRHSQVR
Flexible Loop (DISEMBL)
MVLPNLKISLVIFSLFFLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSdnqlqgsipnlrNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKAskshkpasrkIWVVIVFPLLGTVALLISLIALFFIFRRRKNALqtlqssprgtrgflsvltfeGKIVYEEIIRQRMVLMMSTALEKVDKEVYTKLIYLlekslqsrnfirhsqvr
Low Complexity Region (SEG)
MVLPNlkislvifslfflilfpvlDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSlgnltnldtlylytnslsGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPnlrnltnlirlrlnrnHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGklssliklilrrNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVVIVFPLLGTVallislialffifrrrKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEIIRQRMVLMMSTALEKVDKEVYTKLIYLLEKSLQSRNFIRHSQVR
Disordered region (IsUnstruct)
****NLKISLVIFSLFFLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSI***********************IPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSC*********SRKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQS*PRGTRGFLSVLTFEGKIVYEEIIRQRMVLMMSTALEKVDKEVYTKLIYLLEKSL************
Disordered Region (DISOPRED)
*********LVIFSLFFLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGD**********************VIVFPLLGTVALLISLIALFFIF***********************LTFEGKIVYEEIIRQRMVLMMSTALEKVDKEVYTKLIYLLEKSLQSRNFIRHSQV*
Disordered Region (DISEMBL)
MVLPNLKISLVIFSLFFLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQS**********SRKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEIIRQRMVLMMSTALEKVDKEVYTKLIYLLEKSLQSRNFIRHSQVR
Disordered Region (DISPRO)
**LPNLKISLVIFSLFFLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEIIRQRMVLMMSTALEKVDKEVYTKLIYLLEKSLQSRNFIRHS***
Transmembrane Helix (TMHMM)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLPNLKISLVIFSLFFLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEIIRQRMVLMMSTALEKVDKEVYTKLIYLLEKSLQSRNFIRHSQVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	869	2.2.26 [Sep-21-2011]
Q9LP24	1120	Probable leucine-rich rep	yes	no	0.899	0.698	0.453	1e-178
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.744	0.619	0.429	1e-140
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.872	0.688	0.371	1e-121
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.827	0.652	0.395	1e-118
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.886	0.615	0.344	1e-114
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.874	0.608	0.343	1e-114
O49318	1124	Probable leucine-rich rep	no	no	0.771	0.596	0.374	1e-111
Q9FL28	1173	LRR receptor-like serine/	no	no	0.861	0.638	0.357	1e-109
Q9SSL9	1123	Leucine-rich repeat recep	no	no	0.838	0.649	0.367	1e-104
C0LGV1	1135	LRR receptor-like serine/	no	no	0.819	0.627	0.340	1e-103

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  626 bits (1614), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 373/823 (45%), Positives = 519/823 (63%), Gaps = 41/823 (4%)

Query: 37  EVHALLKWKTSLQNHDKGSLLPSWT--LNNATKISPCAWFGIHCNHVGRVNSINLTN--V 92
           E +ALLKWK++  N  K   L SW    N  T  S  +W+G+ CN  G +  +NLTN  +
Sbjct: 33  EANALLKWKSTFTNSSK---LSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNLTNTGI 89

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIG 152
              F   P    ++S L Y+DLS N  SGTIPPQ GNLS L +  LS N  +G I P +G
Sbjct: 90  EGTFQDFP--FISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLG 147

Query: 153 HLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN 212
           +L  +  L+L +N L+  IP E+G + S+ +LAL+ N L GSIP SLGNL NL +LYL+ 
Sbjct: 148 NLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYE 207

Query: 213 NSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIG 272
           N L+G IP E+GN++S++ LAL  NKL GSIP  LGNL NL  LYL  N  +  IP EIG
Sbjct: 208 NYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIG 267

Query: 273 NLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELAD 332
           N++S++ L L +N+L GSIP SLGNL NL  L L+ N L+G IP ++GN++S+  LEL++
Sbjct: 268 NMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSN 327

Query: 333 NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLG 392
           N+L+ SIP  LGNL NL   YLY+N L+G IP E+GN++S+ +L L+ NKL+GSIP S G
Sbjct: 328 NKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFG 387

Query: 393 NLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLT--------- 443
           NL NL  LYL+ N L G IP+E+GN++S+  L L  NKL+ S+  S GN T         
Sbjct: 388 NLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRV 447

Query: 444 ---------------HMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLR 487
                          H+T L L  N  +G  PE +    KL  ++L  N L+G IP +LR
Sbjct: 448 NHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLR 507

Query: 488 NLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSV 547
           +  +LIR R   N  T +I E+FGI+P L FID SHN F+G+ISS+W K P LG   +S 
Sbjct: 508 DCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSN 567

Query: 548 NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELG 607
           NNI G++P EI + +QL  +DLS N++ G++P  IG L++L +L L  NQL G++P+ L 
Sbjct: 568 NNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLS 627

Query: 608 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSH 667
            L  LE LDLSSN  S+ IP++  + +KLH +NLS N+F   IP +L KL  L++LDLSH
Sbjct: 628 FLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIP-RLSKLTQLTQLDLSH 686

Query: 668 NFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTA 727
           N L  EIPSQ+ +++SL+ L+LSHNNLS  IP  FE M  L  +DIS N+L GP+P++  
Sbjct: 687 NQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPT 746

Query: 728 FSDALMEALQGNEGLCGDI--KGFQSCKA-SKSHKPASRKIWVVIVFPLLGTVALLISLI 784
           F  A  +AL+ N GLC +I  +  + C+   K  K  +  +W+++  P+LG V +++S+ 
Sbjct: 747 FRKATADALEENIGLCSNIPKQRLKPCRELKKPKKNGNLVVWILV--PILG-VLVILSIC 803

Query: 785 ALFFIFRRRKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEIIR 827
           A  F +  RK  LQ  +++   T   +S+ + +GK  Y++II 
Sbjct: 804 ANTFTYCIRKRKLQNGRNTDPETGENMSIFSVDGKFKYQDIIE 846

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  499 bits (1285), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 293/682 (42%), Positives = 418/682 (61%), Gaps = 35/682 (5%)

Query: 178 LSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN 236
           L S+  L LT+  ++G+       +L NL  + L  N  SG+I    G    L    L  
Sbjct: 92  LGSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSI 151

Query: 237 NKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLG 296
           N+L G IP  LG+L+NLDTL+L  N  + SIPSEIG L  ++ + + +N L G IP S G
Sbjct: 152 NQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFG 211

Query: 297 NLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYK 356
           NLT L  LYL+ NSLSGSIPSEIGNL +L  L L  N L+  IP   GNL N+    +++
Sbjct: 212 NLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFE 271

Query: 357 NSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIG 416
           N LSG IP EIGN+ +L  L L  NKL+G IP +LGN+  LA+L+L+ N L GSIP E+G
Sbjct: 272 NQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELG 331

Query: 417 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTML---- 472
            ++S+ +L++ +NKL+  +  S G LT +  L L DN LSG IP  + N  +LT+L    
Sbjct: 332 EMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDT 391

Query: 473 --------------------TLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFG 511
                               TL DN  +G +P +LR+  +LIR+R   N  + +ISE+FG
Sbjct: 392 NNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFG 451

Query: 512 IHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSA 571
           ++P L FIDLS+NNF+GQ+S++W +   L  F +S N+I G++PPEI + +QL  +DLS+
Sbjct: 452 VYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSS 511

Query: 572 NHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLG 631
           N I G++P  I  ++ + KL L  N+L G++PS +  L  LEYLDLSSNR S+ IP +L 
Sbjct: 512 NRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLN 571

Query: 632 NLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSH 691
           NL +L+Y+NLS N   Q IP  L KL  L  LDLS+N L  EI SQ  ++++LE L+LSH
Sbjct: 572 NLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSH 631

Query: 692 NNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDI---KG 748
           NNLS  IP  F++M  L ++D+S+N L GPIP++ AF +A  +A +GN+ LCG +   +G
Sbjct: 632 NNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQG 691

Query: 749 FQSC---KASKSHKPASRKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQSSPR 805
            + C    + KSHK   R + + I+ P++G + +L     +F  FR+R   ++    S  
Sbjct: 692 LKPCSITSSKKSHK--DRNLIIYILVPIIGAIIILSVCAGIFICFRKRTKQIEEHTDSES 749

Query: 806 GTRGFLSVLTFEGKIVYEEIIR 827
           G    LS+ +F+GK+ Y+EII+
Sbjct: 750 GGET-LSIFSFDGKVRYQEIIK 770

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  437 bits (1124), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 298/802 (37%), Positives = 416/802 (51%), Gaps = 44/802 (5%)

Query: 15  LFFLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWF 74
           + FL +  +  F  I+     EE   LL++K  L  +D    L SW   N    +PC W 
Sbjct: 5   ICFLAIVILCSFSFILVRSLNEEGRVLLEFKAFL--NDSNGYLASW---NQLDSNPCNWT 59

Query: 75  GIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLK 134
           GI C H+  V S++L  +N + G + P I  +  L+ L++S+N  SG IP  +     L+
Sbjct: 60  GIACTHLRTVTSVDLNGMN-LSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLE 118

Query: 135 FLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGS 194
            L L  N+F G IP Q+  +  ++ L+L +N L G IP ++G LSSL EL + SN L G 
Sbjct: 119 VLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGV 178

Query: 195 IPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLD 254
           IPPS+  L  L I+    N  SG IPSEI   +SL  L L  N L GS+P  L  L NL 
Sbjct: 179 IPPSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLT 238

Query: 255 TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGS 314
            L L  N  S  IP  +GN+  L +L L EN   GSIP  +G LT +  LYLYTN L+G 
Sbjct: 239 DLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGE 298

Query: 315 IPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLS 374
           IP EIGNL   + ++ ++N+L+  IP   G++ NL   +L++N L G IP E+G L  L 
Sbjct: 299 IPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLE 358

Query: 375 NLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNS 434
            LDLS N+L+G+IP  L  L  L  L L  N L G IP  IG   +   L +  N LS  
Sbjct: 359 KLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGP 418

Query: 435 ISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLI 493
           I         + LL+L  N LSG IP +L     LT L L DNQL GS+P  L NL NL 
Sbjct: 419 IPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLT 478

Query: 494 RLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGS 553
            L L++N L+ NIS   G    L  + L++NNF G+I                       
Sbjct: 479 ALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEI----------------------- 515

Query: 554 LPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLE 613
            PPEIG+ +++   ++S+N + G IP E+G   ++ +L L  N+  G +  ELG L+ LE
Sbjct: 516 -PPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLE 574

Query: 614 YLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLS-ELDLSHNFLGK 672
            L LS NRL+  IP S G+L +L  L L  N   + IP++L KL  L   L++SHN L  
Sbjct: 575 ILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSG 634

Query: 673 EIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDAL 732
            IP  + N++ LE+L L+ N LS  IP     +  LL  +IS N L G +P++  F    
Sbjct: 635 TIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQRMD 694

Query: 733 MEALQGNEGLCGDIKGFQSCKASKSHKP---------ASRKIWVVIVFPLLGTVALLISL 783
                GN GLC   +    C+    H           + R+  + I   ++G+V  LI+ 
Sbjct: 695 SSNFAGNHGLCNSQR--SHCQPLVPHSDSKLNWLINGSQRQKILTITCIVIGSV-FLITF 751

Query: 784 IALFFIFRRRKNALQTLQSSPR 805
           + L +  +RR+ A   L+   +
Sbjct: 752 LGLCWTIKRREPAFVALEDQTK 773

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  426 bits (1095), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 303/766 (39%), Positives = 419/766 (54%), Gaps = 47/766 (6%)

Query: 52  DKGSLLPSWTLNNATKISPCAWFGIHCNHVG---RVNSINLTNVNQIFGIIPPQIGNISK 108
           D    L +W  N++    PC W G+ C++      V S+NL+++  + G + P IG +  
Sbjct: 43  DAKQNLRNWNSNDSV---PCGWTGVMCSNYSSDPEVLSLNLSSM-VLSGKLSPSIGGLVH 98

Query: 109 LKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLS 168
           LK LDLS N  SG IP +IGN S L+ L L+ NQF G IP +IG L  +E L ++ N++S
Sbjct: 99  LKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRIS 158

Query: 169 GPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKS 228
           G +P E+G L SL++L   SN + G +P S+GNL  L       N +SGS+PSEIG  +S
Sbjct: 159 GSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCES 218

Query: 229 LSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN 288
           L  L L  N+L G +P  +G L  L  + L  N FS  IP EI N  SL  L L +N+L 
Sbjct: 219 LVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLV 278

Query: 289 GSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTN 348
           G IP  LG+L +L+ LYLY N L+G+IP EIGNL     ++ ++N L+  IP  LGN+  
Sbjct: 279 GPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEG 338

Query: 349 LAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLL 408
           L   YL++N L+G+IP E+  LK+LS LDLS N L+G IP     L  L +L L  N+L 
Sbjct: 339 LELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLS 398

Query: 409 GSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVK 468
           G+IP ++G    L+ L + DN LS  I   L   ++M +L L  N LSG IP        
Sbjct: 399 GTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPT------- 451

Query: 469 LTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG 528
                            +     L++LRL RN+L      +      +T I+L  N F G
Sbjct: 452 ----------------GITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRG 495

Query: 529 QISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSL 588
            I  + G C  L    ++ N   G LP EIG  SQL  +++S+N + G++PSEI     L
Sbjct: 496 SIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKML 555

Query: 589 IKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ 648
            +L +  N   G LPSE+GSL QLE L LS+N LS +IP +LGNL +L  L +  N F  
Sbjct: 556 QRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNG 615

Query: 649 EIPIKLEKLIHLS-ELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNG 707
            IP +L  L  L   L+LS+N L  EIP ++ N+  LE L L++NNLS  IP  F  ++ 
Sbjct: 616 SIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSS 675

Query: 708 LLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGD-----IKGFQSCKASKSHKPA- 761
           LL  + SYN L GPIP      +  M +  GNEGLCG      I+      +  + KP  
Sbjct: 676 LLGYNFSYNSLTGPIP---LLRNISMSSFIGNEGLCGPPLNQCIQTQPFAPSQSTGKPGG 732

Query: 762 --SRKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQSSPR 805
             S KI + I   ++G V+L+  LIAL     RR   ++T+ SS +
Sbjct: 733 MRSSKI-IAITAAVIGGVSLM--LIALIVYLMRR--PVRTVASSAQ 773

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  413 bits (1061), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 310/901 (34%), Positives = 431/901 (47%), Gaps = 131/901 (14%)

Query: 11  VIFSLFFLILFPVLDFPLIVYSDSTEEVHALLKWKTS-LQNHDKGSLLPSWTLNNATKIS 69
           V+ +LFFL     L        D   ++  LL+ K S + N  +  +L  W   N+   S
Sbjct: 6   VLLALFFLCFSSGLGSGQPGQRD---DLQTLLELKNSFITNPKEEDVLRDW---NSGSPS 59

Query: 70  PCAWFGIHCN--------------------HVGRVNS---INLTN--------------- 91
            C W G+ C                      +GR N+   I+L++               
Sbjct: 60  YCNWTGVTCGGREIIGLNLSGLGLTGSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLS 119

Query: 92  ---------VNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQ 142
                     N + G IP Q+G++  LK L L  N  +GTIP   GNL  L+ L L++ +
Sbjct: 120 SSLESLHLFSNLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCR 179

Query: 143 FSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNL 202
            +G IP + G L  ++ L L  N+L GPIP E+G  +SL   A   N L GS+P  L  L
Sbjct: 180 LTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRL 239

Query: 203 TNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTL------ 256
            NL  L L +NS SG IPS++G+L S+  L L  N+L G IP  L  L NL TL      
Sbjct: 240 KNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNN 299

Query: 257 -------------------------------------------YLRNNSFSSSIPSEIGN 273
                                                      +L     S  IP+EI N
Sbjct: 300 LTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISN 359

Query: 274 LKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADN 333
            +SL +L+L  N L G IP SL  L  L  LYL  NSL G++ S I NL +L    L  N
Sbjct: 360 CQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHN 419

Query: 334 ELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGN 393
            L   +P  +G L  L   YLY+N  SG +P EIGN   L  +D   N+LSG IP S+G 
Sbjct: 420 NLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGR 479

Query: 394 LTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDN 453
           L +L  L+L  N L+G+IP  +GN   +  + L DN+LS SI  S G LT + L  +Y+N
Sbjct: 480 LKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNN 539

Query: 454 ALSGVIPEELGNLVKLTMLTLSDNQLQGSIP------------------------NLRNL 489
           +L G +P+ L NL  LT +  S N+  GSI                          L   
Sbjct: 540 SLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKS 599

Query: 490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 549
           TNL RLRL +N  T  I  +FG   +L+ +D+S N+  G I  + G C  L   D++ N 
Sbjct: 600 TNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNY 659

Query: 550 IIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSL 609
           + G +P  +G    L  + LS+N  +G +P+EI  L++++ L L  N L G +P E+G+L
Sbjct: 660 LSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNL 719

Query: 610 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL-SELDLSHN 668
             L  L+L  N+LS  +P ++G L KL  L LS N    EIP+++ +L  L S LDLS+N
Sbjct: 720 QALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYN 779

Query: 669 FLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAF 728
                IPS I  +  LE L+LSHN L   +P    +M  L Y+++SYN L G +     F
Sbjct: 780 NFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--KKQF 837

Query: 729 SDALMEALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVVI-VFPLLGTVALLISLIALF 787
           S    +A  GN GLCG      +   SK+ +  S K  V+I     L  +AL++ +I LF
Sbjct: 838 SRWQADAFVGNAGLCGSPLSHCNRAGSKNQRSLSPKTVVIISAISSLAAIALMVLVIILF 897

Query: 788 F 788
           F
Sbjct: 898 F 898

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  411 bits (1057), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 309/899 (34%), Positives = 439/899 (48%), Gaps = 139/899 (15%)

Query: 21  FPVLDFPLIVYSDSTEEVHALLKWKTSL-QNHDKGSLLPSWTLNNATKISPCAWFGIHCN 79
           F  L  P I+ +D    +  LL+ K SL  N  +   L  W   N+  I+ C+W G+ C+
Sbjct: 14  FSGLGQPGIINND----LQTLLEVKKSLVTNPQEDDPLRQW---NSDNINYCSWTGVTCD 66

Query: 80  HVG--RVNSINLTNV--------------------------------------------- 92
           + G  RV ++NLT +                                             
Sbjct: 67  NTGLFRVIALNLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFL 126

Query: 93  --NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQ 150
             NQ+ G IP Q+G++  ++ L +  N   G IP  +GNL  L+ L L++ + +G IP Q
Sbjct: 127 FSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQ 186

Query: 151 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL 210
           +G L  +++L L  N L GPIP E+G  S L       N L G+IP  LG L NL IL L
Sbjct: 187 LGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNL 246

Query: 211 HNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSE 270
            NNSL+G IPS++G +  L  L+L  N+L G IP  L +L NL TL L  N+ +  IP E
Sbjct: 247 ANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEE 306

Query: 271 IGNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLE 329
             N+  L  L L  N L+GS+P S+  N TNL+ L L    LSG IP E+   +SL  L+
Sbjct: 307 FWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLD 366

Query: 330 LADNELSSSIPHYL------------------------GNLTNL---------------- 349
           L++N L+ SIP  L                         NLTNL                
Sbjct: 367 LSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPK 426

Query: 350 --------AAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILY 401
                      +LY+N  SG IP EIGN  SL  +D+  N   G IP S+G L  L +L+
Sbjct: 427 EISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLH 486

Query: 402 LHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPE 461
           L  N L+G +P  +GN   L  L L DN+LS SI  S G L  +  L LY+N+L G +P+
Sbjct: 487 LRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPD 546

Query: 462 ELGNLVKLTMLTLSDNQLQGSIP------------------------NLRNLTNLIRLRL 497
            L +L  LT + LS N+L G+I                          L N  NL RLRL
Sbjct: 547 SLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRL 606

Query: 498 NRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPE 557
            +N LT  I  + G   +L+ +D+S N   G I      C  L   D++ N + G +PP 
Sbjct: 607 GKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPW 666

Query: 558 IGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDL 617
           +G  SQL  + LS+N  +  +P+E+   + L+ L L  N L G +P E+G+L  L  L+L
Sbjct: 667 LGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNL 726

Query: 618 SSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL-SELDLSHNFLGKEIPS 676
             N+ S S+P+++G L KL+ L LS N    EIP+++ +L  L S LDLS+N    +IPS
Sbjct: 727 DKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPS 786

Query: 677 QICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEAL 736
            I  +  LE L+LSHN L+  +P    +M  L Y+++S+N L G +     FS    ++ 
Sbjct: 787 TIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPADSF 844

Query: 737 QGNEGLCGDIKGFQSCKASKSHKP----ASRKIWVVIVFPLLGTVALLISLIALFFIFR 791
            GN GLCG       C   +S+      ++R + ++     L  + L+I +IALFF  R
Sbjct: 845 LGNTGLCG--SPLSRCNRVRSNNKQQGLSARSVVIISAISALTAIGLMILVIALFFKQR 901

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  404 bits (1037), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 265/707 (37%), Positives = 386/707 (54%), Gaps = 37/707 (5%)

Query: 64  NATKISPCAWFGIHCNHVGR--------VNSINLTNVNQIFGIIPPQIGNISKLKYLDLS 115
           N    +PC W G++C+  G         V S++L+++N + GI+ P IG +  L YL+L+
Sbjct: 59  NGIDETPCNWIGVNCSSQGSSSSSNSLVVTSLDLSSMN-LSGIVSPSIGGLVNLVYLNLA 117

Query: 116 SNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEV 175
            N+ +G IP +IGN S L+ ++L+ NQF G IP +I  LS + + ++  N+LSGP+P E+
Sbjct: 118 YNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNICNNKLSGPLPEEI 177

Query: 176 GGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALG 235
           G L +L EL   +N L G +P SLGNL  L       N  SG+IP+EIG   +L  L L 
Sbjct: 178 GDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLA 237

Query: 236 NNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSL 295
            N + G +P  +G L  L  + L  N FS  IP +IGNL SL  L L  N L G IP  +
Sbjct: 238 QNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEI 297

Query: 296 GNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLY 355
           GN+ +L  LYLY N L+G+IP E+G L  +  ++ ++N LS  IP  L  ++ L   YL+
Sbjct: 298 GNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLF 357

Query: 356 KNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI 415
           +N L+G IP+E+  L++L+ LDLS N L+G IP    NLT++  L L  N+L G IP+ +
Sbjct: 358 QNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGL 417

Query: 416 GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLS 475
           G    L+ +   +N+LS  I   +   +++ LL L  N + G IP  +     L  L + 
Sbjct: 418 GLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVV 477

Query: 476 DNQLQGSIPN-LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDW 534
            N+L G  P  L  L NL  + L++N  +  +    G   KL  + L+ N F   + ++ 
Sbjct: 478 GNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEI 537

Query: 535 GKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILR 594
            K  NL TF+VS N++ G +P EI +   L  +DLS N  IG +P E             
Sbjct: 538 SKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPE------------- 584

Query: 595 RNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL 654
                      LGSL QLE L LS NR S +IP ++GNL  L  L +  N F   IP +L
Sbjct: 585 -----------LGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQL 633

Query: 655 EKLIHLS-ELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDI 713
             L  L   ++LS+N    EIP +I N+  L  L+L++N+LS  IP  FE ++ LL  + 
Sbjct: 634 GLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNF 693

Query: 714 SYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKP 760
           SYN L G +P++  F +  + +  GN+GLCG     +SC  S S  P
Sbjct: 694 SYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGG--HLRSCDPSHSSWP 738

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  397 bits (1019), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 289/809 (35%), Positives = 405/809 (50%), Gaps = 60/809 (7%)

Query: 16  FFLILFPVLDFPLIVYSDSTE-EVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWF 74
           F ++      F + +   S E E+ AL  +K  + N   G +L  WT+  + +   C W 
Sbjct: 8   FLILTLTFFFFGIALAKQSFEPEIEALKSFKNGISNDPLG-VLSDWTIIGSLR--HCNWT 64

Query: 75  GIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLK 134
           GI C+  G V S++L    Q+ G++ P I N++ L+ LDL+SNSF+G IP +IG L+ L 
Sbjct: 65  GITCDSTGHVVSVSLLE-KQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELN 123

Query: 135 FLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGS 194
            L L  N FSG IP  I  L  I  L L  N LSG +P E+   SSL  +    N L G 
Sbjct: 124 QLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGK 183

Query: 195 IPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLD 254
           IP  LG+L +L +     N L+GSIP  IG L +L+ L L  N+L G IP   GNL NL 
Sbjct: 184 IPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQ 243

Query: 255 TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGS 314
           +L L  N     IP+EIGN  SL  LEL +N+L G IP  LGNL  L  L +Y N L+ S
Sbjct: 244 SLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSS 303

Query: 315 IPS------------------------EIGNLKSLSGLELADNELSSSIPHYLGNLTNLA 350
           IPS                        EIG L+SL  L L  N  +   P  + NL NL 
Sbjct: 304 IPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLT 363

Query: 351 AFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGS 410
              +  N++SG +P+++G L +L NL   +N L+G IP S+ N T L +L L  N + G 
Sbjct: 364 VLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGE 423

Query: 411 IPREIG-----------------------NLKSLFELQLGDNKLSNSISHSLGNLTHMTL 447
           IPR  G                       N  +L  L + DN L+ ++   +G L  + +
Sbjct: 424 IPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRI 483

Query: 448 LALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNI 506
           L +  N+L+G IP E+GNL  L +L L  N   G IP  + NLT L  LR+  N L   I
Sbjct: 484 LQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPI 543

Query: 507 SESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHV 566
            E       L+ +DLS+N F GQI + + K  +L    +  N   GS+P  +   S L+ 
Sbjct: 544 PEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNT 603

Query: 567 IDLSANHIIGKIPSEIGKLSSLIKLIL----RRNQLFGQLPSELGSLIQLEYLDLSSNRL 622
            D+S N + G IP E+  L+SL  + L      N L G +P ELG L  ++ +DLS+N  
Sbjct: 604 FDISDNLLTGTIPGEL--LASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLF 661

Query: 623 SNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLGKEIPSQICNM 681
           S SIPRSL     +  L+ S N     IP ++ + +  +  L+LS N    EIP    NM
Sbjct: 662 SGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNM 721

Query: 682 RSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEG 741
             L  L+LS NNL+  IP     ++ L ++ ++ N L G +P S  F +     L GN  
Sbjct: 722 THLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTD 781

Query: 742 LCGDIKGFQSCKASKSHKPASRKIWVVIV 770
           LCG  K  + C   +     S++  V+++
Sbjct: 782 LCGSKKPLKPCTIKQKSSHFSKRTRVILI 810

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1

 Score =  379 bits (974), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 276/752 (36%), Positives = 410/752 (54%), Gaps = 23/752 (3%)

Query: 59  SWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNS 118
           +W +N A++ +PC WFGI C+    V S+N T  +++ G + P+IG +  L+ LDLS+N+
Sbjct: 53  TWKIN-ASEATPCNWFGITCDDSKNVASLNFTR-SRVSGQLGPEIGELKSLQILDLSTNN 110

Query: 119 FSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGL 178
           FSGTIP  +GN + L  L LS N FS +IP  +  L  +E L+L+ N L+G +P  +  +
Sbjct: 111 FSGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLYINFLTGELPESLFRI 170

Query: 179 SSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNK 238
             L  L L  N L G IP S+G+   L  L ++ N  SG+IP  IGN  SL  L L  NK
Sbjct: 171 PKLQVLYLDYNNLTGPIPQSIGDAKELVELSMYANQFSGNIPESIGNSSSLQILYLHRNK 230

Query: 239 LCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNL 298
           L GS+P  L  L NL TL++ NNS    +     N K+L  L+L  N   G +P +LGN 
Sbjct: 231 LVGSLPESLNLLGNLTTLFVGNNSLQGPVRFGSPNCKNLLTLDLSYNEFEGGVPPALGNC 290

Query: 299 TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS 358
           ++LD L + + +LSG+IPS +G LK+L+ L L++N LS SIP  LGN ++L    L  N 
Sbjct: 291 SSLDALVIVSGNLSGTIPSSLGMLKNLTILNLSENRLSGSIPAELGNCSSLNLLKLNDNQ 350

Query: 359 LSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNL 418
           L G IPS +G L+ L +L+L EN+ SG IP  +    +L  L ++ N L G +P E+  +
Sbjct: 351 LVGGIPSALGKLRKLESLELFENRFSGEIPIEIWKSQSLTQLLVYQNNLTGELPVEMTEM 410

Query: 419 KSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 478
           K L    L +N    +I   LG  + +  +    N L+G IP  L +  KL +L L  N 
Sbjct: 411 KKLKIATLFNNSFYGAIPPGLGVNSSLEEVDFIGNKLTGEIPPNLCHGRKLRILNLGSNL 470

Query: 479 LQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKC 537
           L G+IP ++ +   + R  L  N+L+  + E F     L+F+D + NNF G I    G C
Sbjct: 471 LHGTIPASIGHCKTIRRFILRENNLSGLLPE-FSQDHSLSFLDFNSNNFEGPIPGSLGSC 529

Query: 538 PNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQ 597
            NL + ++S N   G +PP++G+   L  ++LS N + G +P+++    SL +  +  N 
Sbjct: 530 KNLSSINLSRNRFTGQIPPQLGNLQNLGYMNLSRNLLEGSLPAQLSNCVSLERFDVGFNS 589

Query: 598 LFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL--- 654
           L G +PS   +   L  L LS NR S  IP+ L  L KL  L ++ N F  EIP  +   
Sbjct: 590 LNGSVPSNFSNWKGLTTLVLSENRFSGGIPQFLPELKKLSTLQIARNAFGGEIPSSIGLI 649

Query: 655 EKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDIS 714
           E LI+  +LDLS N L  EIP+++ ++  L  LN+S+NNL+  +    + +  LL++D+S
Sbjct: 650 EDLIY--DLDLSGNGLTGEIPAKLGDLIKLTRLNISNNNLTGSL-SVLKGLTSLLHVDVS 706

Query: 715 YNELHGPIPNSTAFSDALME--ALQGNEGLC---------GDIKGFQSCK-ASKSHKPAS 762
            N+  GPIP++      L E  +  GN  LC               + CK  SKS K   
Sbjct: 707 NNQFTGPIPDNLE-GQLLSEPSSFSGNPNLCIPHSFSASNNSRSALKYCKDQSKSRKSGL 765

Query: 763 RKIWVVIVFPLLGTVALLISLIALFFIFRRRK 794
               +V++  L   + L++ L  +F   RRRK
Sbjct: 766 STWQIVLIAVLSSLLVLVVVLALVFICLRRRK 797

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  377 bits (969), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 281/825 (34%), Positives = 410/825 (49%), Gaps = 113/825 (13%)

Query: 3   LPNLKISLVIFSLFFLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTL 62
           +P  +   +  S F + L   L F +   S ST EV AL+ W  S  N    S+   W  
Sbjct: 5   MPIPRKKALTVSHFSITLSLFLAFFISSTSASTNEVSALISWLHS-SNSPPPSVFSGW-- 61

Query: 63  NNATKISPCAWFGIHCNHVGR--VNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFS 120
            N +   PC W  I C+      V  IN+ +V                            
Sbjct: 62  -NPSDSDPCQWPYITCSSSDNKLVTEINVVSV---------------------------- 92

Query: 121 GTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSS 180
                                Q +   PP I   + ++ L +    L+G I  E+G  S 
Sbjct: 93  ---------------------QLALPFPPNISSFTSLQKLVISNTNLTGAISSEIGDCSE 131

Query: 181 LNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLC 240
           L  + L+SN L G IP SLG L NL  L L++N L+G IP E+G+  SL +L + +N L 
Sbjct: 132 LIVIDLSSNSLVGEIPSSLGKLKNLQELCLNSNGLTGKIPPELGDCVSLKNLEIFDNYLS 191

Query: 241 GSIPLFLGNLTNLDTLYLRNNS-FSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLT 299
            ++PL LG ++ L+++    NS  S  IP EIGN ++L +L L   +++GS+P+SLG L+
Sbjct: 192 ENLPLELGKISTLESIRAGGNSELSGKIPEEIGNCRNLKVLGLAATKISGSLPVSLGQLS 251

Query: 300 NLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSL 359
            L +L +Y+  LSG IP E+GN   L  L L DN+LS ++P  LG L NL    L++N+L
Sbjct: 252 KLQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNL 311

Query: 360 SGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLK 419
            G IP EIG +KSL+ +DLS N  SG+IP S GNL+NL  L L SN + GSIP  + N  
Sbjct: 312 HGPIPEEIGFMKSLNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSNNITGSIPSILSNCT 371

Query: 420 SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQL 479
            L + Q+  N++S  I   +G L  + +   + N L G IP+EL     L  L LS N L
Sbjct: 372 KLVQFQIDANQISGLIPPEIGLLKELNIFLGWQNKLEGNIPDELAGCQNLQALDLSQNYL 431

Query: 480 QGSIP----NLRNLT---------------------NLIRLRLNRNHLTCNISESFGIHP 514
            GS+P     LRNLT                     +L+RLRL  N +T  I +  G   
Sbjct: 432 TGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNNRITGEIPKGIGFLQ 491

Query: 515 KLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHI 574
            L+F+DLS NN  G +  +   C  L   ++S N + G LP  +   ++L V+D+S+N +
Sbjct: 492 NLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDL 551

Query: 575 IGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLV 634
            GKIP  +G L SL +LIL +N   G++PS LG    L+ LDLSSN +S +IP  L ++ 
Sbjct: 552 TGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNNISGTIPEELFDIQ 611

Query: 635 KLH-YLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNN 693
            L   LNLS N     IP ++  L  LS LD+SHN L  ++ S +  + +L  LN+SHN 
Sbjct: 612 DLDIALNLSWNSLDGFIPERISALNRLSVLDISHNMLSGDL-SALSGLENLVSLNISHNR 670

Query: 694 LSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCK 753
            S                        G +P+S  F   +   ++GN GLC   KGF+SC 
Sbjct: 671 FS------------------------GYLPDSKVFRQLIGAEMEGNNGLCS--KGFRSCF 704

Query: 754 ASKSHKPASRK----IWVVIVFPLLGTVALLISLIALFFIFRRRK 794
            S S +  +++      + I   LL +V  +++++ +  + R ++
Sbjct: 705 VSNSSQLTTQRGVHSHRLRIAIGLLISVTAVLAVLGVLAVIRAKQ 749

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	869
297846638	1123	hypothetical protein ARALYDRAFT_473694 [	0.903	0.699	0.464	0.0
15219699	1120	putative leucine-rich repeat receptor-li	0.899	0.698	0.453	1e-176
224589418	845	leucine-rich repeat receptor-like protei	0.866	0.891	0.459	1e-171
357439013	1131	Receptor protein kinase-like protein [Me	0.925	0.710	0.430	1e-169
224145445	1163	predicted protein [Populus trichocarpa]	0.910	0.680	0.464	1e-165
356577797	1204	PREDICTED: probable LRR receptor-like se	0.905	0.653	0.417	1e-165
359484864	1091	PREDICTED: probable LRR receptor-like se	0.844	0.672	0.459	1e-165
225456159	1038	PREDICTED: probable LRR receptor-like se	0.743	0.622	0.488	1e-163
225456161	1037	PREDICTED: probable LRR receptor-like se	0.743	0.622	0.491	1e-163
359487164	1378	PREDICTED: probable leucine-rich repeat	0.841	0.530	0.436	1e-162

>gi|297846638|ref|XP_002891200.1| hypothetical protein ARALYDRAFT_473694 [Arabidopsis lyrata subsp. lyrata] gi|297337042|gb|EFH67459.1| hypothetical protein ARALYDRAFT_473694 [Arabidopsis lyrata subsp. lyrata]

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/823 (46%), Positives = 520/823 (63%), Gaps = 38/823 (4%)

Query: 37  EVHALLKWKTSLQNHDKGSLLPSWT--LNNATKISPCAWFGIHCNHVGRVNSINLTN--V 92
           E +ALLKWK++  N    S L SW    N     S  +W+G+ CN  G +  +NLT+  +
Sbjct: 33  EANALLKWKSTFTNQSHSSKLSSWVNDANTNPSFSCTSWYGVFCNSRGSIEKLNLTDNAI 92

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIG 152
              F   P    ++  L  +DLS N FSGTIPPQ GNLS L +  LS N  +  IPP +G
Sbjct: 93  EGTFQDFP--FSSLPNLASIDLSMNRFSGTIPPQFGNLSKLIYFDLSTNHLTREIPPSLG 150

Query: 153 HLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN 212
           +L  +  L L  N L+G IP ++G + S+  L L+ N L GSIP SLGNL NL +LYL+ 
Sbjct: 151 NLKNLTVLDLHHNYLTGVIPPDLGNMESMTYLELSHNKLTGSIPSSLGNLKNLTVLYLYQ 210

Query: 213 NSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIG 272
           N L+G IP E+GN++S+  L L  NKL GSIP  LGNL NL  LYL +N  +  IP E+G
Sbjct: 211 NYLTGVIPPELGNMESMIDLELSTNKLTGSIPSSLGNLKNLTVLYLHHNYLTGVIPPELG 270

Query: 273 NLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELAD 332
           N++S+  LEL +N+L GSIP SLGNL NL  LYLY N L+G IP E+GN++S++ L+L++
Sbjct: 271 NMESMIDLELSDNKLTGSIPSSLGNLKNLTVLYLYKNYLTGVIPPELGNMESMTYLDLSE 330

Query: 333 NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLG 392
           N+L+ SIP  LGNL NL   YL+ N L+G IP E+GNL+S+ +L+LS+NKL+GSIP SLG
Sbjct: 331 NKLTGSIPSSLGNLKNLTVLYLHHNYLTGVIPPELGNLESMIDLELSDNKLTGSIPSSLG 390

Query: 393 NLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYD 452
           NL NL +LYLH N L G IP E+GN++S+ +L L  N L+ SI  S GN T +  L L D
Sbjct: 391 NLKNLTVLYLHHNYLTGVIPPELGNMESMIDLALSQNNLTGSIPSSFGNFTKLESLYLRD 450

Query: 453 NALSGVIPEELGNLVKLTML------------------------TLSDNQLQGSIP-NLR 487
           N LSG IP  + N  +LT L                        +L  N L+G IP +LR
Sbjct: 451 NHLSGTIPRGVANSSELTELLLDINNFTGFLPENICKGGKLQNFSLDYNHLEGHIPKSLR 510

Query: 488 NLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSV 547
           +  +LIR +   N    NISE+FG++P L FIDLSHN F G+ISS+W K P LG   +S 
Sbjct: 511 DCKSLIRAKFVGNKFIGNISEAFGVYPDLDFIDLSHNKFNGEISSNWQKSPKLGALIMSN 570

Query: 548 NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELG 607
           NNI G++PPEI +  QL  +DLS N++ G++P  IG L+ L KL+L  N+L G++P+ L 
Sbjct: 571 NNITGAIPPEIWNMKQLGELDLSTNNLTGELPEAIGNLTGLSKLLLNGNKLSGRVPTGLS 630

Query: 608 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSH 667
            L  LE LDLSSNR S+ IP++  + +KLH +NLS N F   IP  L KL  L+ LDLSH
Sbjct: 631 FLTNLESLDLSSNRFSSQIPQTFDSFLKLHEMNLSKNNFDGRIP-GLTKLTQLTHLDLSH 689

Query: 668 NFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTA 727
           N L  EIPSQ+ +++SL+ LNLSHNNLS FIP  FE M  L +IDIS N+L GP+P++ A
Sbjct: 690 NQLDGEIPSQLSSLQSLDKLNLSHNNLSGFIPTTFESMKALTFIDISNNKLEGPLPDNPA 749

Query: 728 FSDALMEALQGNEGLCGDI--KGFQSCKA-SKSHKPASRKIWVVIVFPLLGTVALLISLI 784
           F +A  +AL+GN GLC +I  +  +SC+   K  K  +  +W+++  P+LG + +L S+ 
Sbjct: 750 FQNATSDALEGNRGLCSNIPKQRLKSCRGFQKPKKNGNLLVWILV--PILGALVIL-SIC 806

Query: 785 ALFFIFRRRKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEIIR 827
           A  F +  RK      +++   T   +S+ + +GK  Y++II 
Sbjct: 807 AGAFTYYIRKRKPHNGRNTDSETGENMSIFSVDGKFKYQDIIE 849

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219699|ref|NP_174809.1| putative leucine-rich repeat receptor-like protein [Arabidopsis thaliana] gi|75175345|sp|Q9LP24.1|Y1571_ARATH RecName: Full=Probable leucine-rich repeat receptor-like protein kinase At1g35710; Flags: Precursor gi|8778966|gb|AAF79881.1|AC021198_1 Contains similarity to receptor protein kinase-like protein from Arabidopsis thaliana gb|AL161513. It contains a eukaryotic protein kinase domain PF|00069. EST gb|AI997574 comes from this gene [Arabidopsis thaliana] gi|332193703|gb|AEE31824.1| putative leucine-rich repeat receptor-like protein [Arabidopsis thaliana]

 Score =  626 bits (1614), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 373/823 (45%), Positives = 519/823 (63%), Gaps = 41/823 (4%)

Query: 37  EVHALLKWKTSLQNHDKGSLLPSWT--LNNATKISPCAWFGIHCNHVGRVNSINLTN--V 92
           E +ALLKWK++  N  K   L SW    N  T  S  +W+G+ CN  G +  +NLTN  +
Sbjct: 33  EANALLKWKSTFTNSSK---LSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNLTNTGI 89

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIG 152
              F   P    ++S L Y+DLS N  SGTIPPQ GNLS L +  LS N  +G I P +G
Sbjct: 90  EGTFQDFP--FISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLG 147

Query: 153 HLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN 212
           +L  +  L+L +N L+  IP E+G + S+ +LAL+ N L GSIP SLGNL NL +LYL+ 
Sbjct: 148 NLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYE 207

Query: 213 NSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIG 272
           N L+G IP E+GN++S++ LAL  NKL GSIP  LGNL NL  LYL  N  +  IP EIG
Sbjct: 208 NYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIG 267

Query: 273 NLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELAD 332
           N++S++ L L +N+L GSIP SLGNL NL  L L+ N L+G IP ++GN++S+  LEL++
Sbjct: 268 NMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSN 327

Query: 333 NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLG 392
           N+L+ SIP  LGNL NL   YLY+N L+G IP E+GN++S+ +L L+ NKL+GSIP S G
Sbjct: 328 NKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFG 387

Query: 393 NLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLT--------- 443
           NL NL  LYL+ N L G IP+E+GN++S+  L L  NKL+ S+  S GN T         
Sbjct: 388 NLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRV 447

Query: 444 ---------------HMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLR 487
                          H+T L L  N  +G  PE +    KL  ++L  N L+G IP +LR
Sbjct: 448 NHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLR 507

Query: 488 NLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSV 547
           +  +LIR R   N  T +I E+FGI+P L FID SHN F+G+ISS+W K P LG   +S 
Sbjct: 508 DCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSN 567

Query: 548 NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELG 607
           NNI G++P EI + +QL  +DLS N++ G++P  IG L++L +L L  NQL G++P+ L 
Sbjct: 568 NNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLS 627

Query: 608 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSH 667
            L  LE LDLSSN  S+ IP++  + +KLH +NLS N+F   IP +L KL  L++LDLSH
Sbjct: 628 FLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIP-RLSKLTQLTQLDLSH 686

Query: 668 NFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTA 727
           N L  EIPSQ+ +++SL+ L+LSHNNLS  IP  FE M  L  +DIS N+L GP+P++  
Sbjct: 687 NQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPT 746

Query: 728 FSDALMEALQGNEGLCGDI--KGFQSCKA-SKSHKPASRKIWVVIVFPLLGTVALLISLI 784
           F  A  +AL+ N GLC +I  +  + C+   K  K  +  +W+++  P+LG V +++S+ 
Sbjct: 747 FRKATADALEENIGLCSNIPKQRLKPCRELKKPKKNGNLVVWILV--PILG-VLVILSIC 803

Query: 785 ALFFIFRRRKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEIIR 827
           A  F +  RK  LQ  +++   T   +S+ + +GK  Y++II 
Sbjct: 804 ANTFTYCIRKRKLQNGRNTDPETGENMSIFSVDGKFKYQDIIE 846

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224589418|gb|ACN59243.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana]

 Score =  609 bits (1570), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 365/794 (45%), Positives = 503/794 (63%), Gaps = 41/794 (5%)

Query: 37  EVHALLKWKTSLQNHDKGSLLPSWT--LNNATKISPCAWFGIHCNHVGRVNSINLTN--V 92
           E +ALLKWK++  N  K   L SW    N  T  S  +W+G+ CN  G +  +NLTN  +
Sbjct: 33  EANALLKWKSTFTNSSK---LSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNLTNTGI 89

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIG 152
              F   P    ++S L Y+DLS N  SGTIPPQ GNLS L +  LS N  +G I P +G
Sbjct: 90  EGTFQDFP--FISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLG 147

Query: 153 HLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN 212
           +L  +  L+L +N L+  IP E+G + S+ +LAL+ N L GSIP SLGNL NL +LYL+ 
Sbjct: 148 NLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYE 207

Query: 213 NSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIG 272
           N L+G IP E+GN++S++ LAL  NKL GSIP  LGNL NL  LYL  N  +  IP EIG
Sbjct: 208 NYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIG 267

Query: 273 NLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELAD 332
           N++S++ L L +N+L GSIP SLGNL NL  L L+ N L+G IP ++GN++S+  LEL++
Sbjct: 268 NMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSN 327

Query: 333 NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLG 392
           N+L+ SIP  LGNL NL   YLY+N L+G IP E+GN++S+ +L L+ NKL+GSIP S G
Sbjct: 328 NKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFG 387

Query: 393 NLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLT--------- 443
           NL NL  LYL+ N L G IP+E+GN++S+  L L  NKL+ S+  S GN T         
Sbjct: 388 NLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRV 447

Query: 444 ---------------HMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLR 487
                          H+T L L  N  +G  PE +    KL  ++L  N L+G IP +LR
Sbjct: 448 NHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLR 507

Query: 488 NLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSV 547
           +  +LIR R   N  T +I E+FGI+P L FID SHN F+G+ISS+W K P LG   +S 
Sbjct: 508 DCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSN 567

Query: 548 NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELG 607
           NNI G++P EI + +QL  +DLS N++ G++P  IG L++L +L L  NQL G++P+ L 
Sbjct: 568 NNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLS 627

Query: 608 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSH 667
            L  LE LDLSSN  S+ IP++  + +KLH +NLS N+F   IP +L KL  L++LDLSH
Sbjct: 628 FLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIP-RLSKLTQLTQLDLSH 686

Query: 668 NFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTA 727
           N L  EIPSQ+ +++SL+ L+LS+NNLS  IP  FE M  L  +DIS N+L GP+P++  
Sbjct: 687 NQLDGEIPSQLSSLQSLDKLDLSYNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPT 746

Query: 728 FSDALMEALQGNEGLCGDI--KGFQSCKA-SKSHKPASRKIWVVIVFPLLGTVALLISLI 784
           F  A  +AL+ N GLC +I  +  + C+   K  K  +  +W+++  P+LG V +++S+ 
Sbjct: 747 FRKATADALEENIGLCSNIPKQRLKPCRELKKPKKNGNLVVWILV--PILG-VLVILSIC 803

Query: 785 ALFFIFRRRKNALQ 798
           A  F +  RK  LQ
Sbjct: 804 ANTFTYCIRKRKLQ 817

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439013|ref|XP_003589783.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355478831|gb|AES60034.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 362/841 (43%), Positives = 512/841 (60%), Gaps = 37/841 (4%)

Query: 16  FFLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCA-WF 74
           FF +   V+  P    +D   E  ALLKWK SL NH   +LL SW  NN     PC+ W 
Sbjct: 17  FFFVF--VMATPYAATNDQGSEADALLKWKASLDNHSN-ALLSSWIGNN-----PCSSWE 68

Query: 75  GIHCNHVGR-VNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSML 133
           GI C++  + +N +NLT++     +      +++K+  L L++N   G +P  IG +S L
Sbjct: 69  GITCDYKSKSINKVNLTDIGLKGTLQSLNFSSLTKIHTLVLTNNFLYGVVPHHIGEMSSL 128

Query: 134 KFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG 193
           K L LS N  SG IP  IG+LS I  L L  N L+G IP E+  L SL  L++ +N L G
Sbjct: 129 KTLDLSVNNLSGTIPNSIGNLSKISYLDLSFNYLTGIIPFEITQLVSLYFLSMATNQLIG 188

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 253
            IP  +GNL NL  L +  N+L+GS+P EIG L  L+ L L  N L G+IP  +GNL+NL
Sbjct: 189 HIPREIGNLVNLERLDIQLNNLTGSVPQEIGFLTKLAELDLSANYLSGTIPSTIGNLSNL 248

Query: 254 DTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG 313
             LYL  N    SIPSE+GNL SL  ++L  N L+G IP S+GNL NL+++ L  N LSG
Sbjct: 249 HWLYLYQNHLMGSIPSEVGNLYSLFTIQLLGNHLSGPIPSSIGNLVNLNSIRLDHNDLSG 308

Query: 314 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 373
            IP  IG L +L  ++L+DN++S  +P  +GNLT L   YL  N+L+G IP  IGNL +L
Sbjct: 309 EIPISIGKLVNLDTIDLSDNKISGPLPSTIGNLTKLTVLYLSSNALTGQIPPSIGNLVNL 368

Query: 374 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 433
             +DLSENKLS  IP ++GNLT ++IL LHSN L G +P  IGN+ +L  + L +NKLS 
Sbjct: 369 DTIDLSENKLSRPIPSTVGNLTKVSILSLHSNALTGQLPPSIGNMVNLDTIYLSENKLSG 428

Query: 434 SISHSLGNLTHMTLLALYDNALSGVIPEELGNLV------------------------KL 469
            I  ++GNLT +  L+L+ N+L+G IP+ + N+                         KL
Sbjct: 429 PIPSTIGNLTKLNSLSLFSNSLTGNIPKVMNNIANLESLQLASNNFTGHLPLNICAGRKL 488

Query: 470 TMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG 528
           T  + S+NQ  G IP +L+  ++LIR+RL +N +T NI+++FG++P L +++LS NNFYG
Sbjct: 489 TKFSASNNQFTGPIPKSLKKCSSLIRVRLQQNQITDNITDAFGVYPNLDYMELSDNNFYG 548

Query: 529 QISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSL 588
            IS +WGKC NL +  +S NN+ GS+P E+G ++QL  ++LS+NH+ GKIP E+G LS L
Sbjct: 549 HISPNWGKCKNLTSLQISNNNLTGSIPQELGGATQLQELNLSSNHLTGKIPEELGNLSLL 608

Query: 589 IKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ 648
           IKL +  N L G++P ++ SL  L  L+L  N LS  IPR LG L +L +LNLS N+F  
Sbjct: 609 IKLSISNNNLLGEVPVQIASLQALTALELEKNNLSGFIPRRLGRLSELIHLNLSQNKFEG 668

Query: 649 EIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGL 708
            IP++ ++L  + +LDLS N +   IPS +  +  L+ LNLSHNNLS  IP  + EM  L
Sbjct: 669 NIPVEFDQLKVIEDLDLSENVMSGTIPSMLGQLNHLQTLNLSHNNLSGTIPLSYGEMLSL 728

Query: 709 LYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKS--HKPASRKIW 766
             +DISYN+L GPIP+ TAF  A +EAL+ N+GLCG++ G   C  S    H   +  I 
Sbjct: 729 TIVDISYNQLEGPIPSITAFQKAPIEALRNNKGLCGNVSGLVCCSTSGGNFHSHKTSNIL 788

Query: 767 VVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEII 826
           V+++   LGT+ L      + ++F +  +  +   +    T    ++ +F+GK+VYE II
Sbjct: 789 VLVLPLTLGTLLLAFFAYGISYLFCQTSSTKEDNHAEEFQTENLFAIWSFDGKMVYETII 848

Query: 827 R 827
            
Sbjct: 849 E 849

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145445|ref|XP_002325645.1| predicted protein [Populus trichocarpa] gi|222862520|gb|EEF00027.1| predicted protein [Populus trichocarpa]

 Score =  590 bits (1521), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 374/805 (46%), Positives = 501/805 (62%), Gaps = 14/805 (1%)

Query: 30  VYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCA-WFGIHCNHVGRVNSIN 88
           V   +  E  ALLKWK SL N  + SLL SW       ISPC  W GI C+  G V +++
Sbjct: 54  VAGGNNTEAEALLKWKASLDNQSQ-SLLSSWF-----GISPCINWTGITCDSSGSVTNLS 107

Query: 89  LTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIP 148
           L +      +      +   L  L+L  NS  GT+P  I NL  +  L L  N  +G IP
Sbjct: 108 LPHFGLRGTLYDLNFSSFPNLFSLNLQRNSIHGTVPSGIDNLPKITELNLCDNNLTGSIP 167

Query: 149 PQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAIL 208
            +IG +  +  L+L  N LSG IP E+G L+SL+ L+L++N L G IP S+GNLTNL++L
Sbjct: 168 SKIGLMKSLNILYLCGNILSGSIPCEIGKLTSLSLLSLSANNLTGVIPFSIGNLTNLSLL 227

Query: 209 YLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIP 268
           +L  N LSG IPS IGN+  L  L L  N L G IP  +GNL +L  LYL  N  S SIP
Sbjct: 228 HLFQNQLSGPIPSSIGNMSFLIDLQLQQNNLTGFIPSSVGNLRSLSILYLWGNKLSGSIP 287

Query: 269 SEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGL 328
            EIG L+SL+ L+   N L G+IP S+GNLTNL   +L+ N LSG IP+ IGN+  L  +
Sbjct: 288 GEIGLLESLNDLDFSSNNLTGAIPNSIGNLTNLSFFHLFQNQLSGPIPTSIGNMIMLIDV 347

Query: 329 ELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLS---ENKLSG 385
           EL  N L  SIP  +GNL  L+ FYL++N LSG IP EIG L+SL++LD S   EN L+G
Sbjct: 348 ELGQNNLIGSIPTSVGNLRKLSIFYLWRNKLSGFIPQEIGLLESLNDLDFSKLDENNLNG 407

Query: 386 SIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHM 445
            IP S+GNL NL+ LYL  N L G +P EIG LKSL +L  G+NKL  S+   + NLTH+
Sbjct: 408 LIPSSIGNLKNLSFLYLGENNLYGYVPSEIGKLKSLEKLTFGENKLRGSLPLKMNNLTHL 467

Query: 446 TLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTC 504
             L L  N  +G +P+EL +   L      +N   GSIP +L+N T L RLRL+RN LT 
Sbjct: 468 KFLDLSYNEFTGHLPQELCHGEVLERFIACNNYFSGSIPKSLKNCTGLHRLRLDRNQLTG 527

Query: 505 NISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQL 564
           NISE FGI+P L ++DLS+NNFYG++S  WG   N+ +  +S NN+ G +P E+G ++QL
Sbjct: 528 NISEDFGIYPHLNYVDLSYNNFYGELSLKWGDYRNITSLKISNNNVSGEIPAELGKATQL 587

Query: 565 HVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSN 624
            +IDLS+NH+ G IP E+G L  L  L L  N L G +PS++  L  L+ LDL+SN LS 
Sbjct: 588 QLIDLSSNHLEGTIPKELGGLKLLYNLTLSNNHLSGAIPSDIKMLSSLKILDLASNNLSG 647

Query: 625 SIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSL 684
           SIP+ LG    L  LNLS N+F   IP ++  L  L +LDLS NFL +EIP Q+  ++ L
Sbjct: 648 SIPKQLGECSNLLLLNLSNNKFTNSIPQEMGFLRSLQDLDLSCNFLAQEIPWQLGQLQML 707

Query: 685 EMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCG 744
           E LN+SHN LS  IPR F+++  L  +DISYNELHGPIP++ AF +A  EAL+ N G+CG
Sbjct: 708 ETLNVSHNMLSGLIPRTFKDLLSLTVVDISYNELHGPIPDTKAFHNASFEALRDNMGICG 767

Query: 745 DIKGFQSC---KASKSHKPASRKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQ 801
           +  G + C   K+S++ K  S K+ ++IV PLLG++ L++ +I   FI R+R    +   
Sbjct: 768 NASGLKPCNLPKSSRTVKRKSNKLVILIVLPLLGSLLLVLVVIGALFILRQRARKRKAEP 827

Query: 802 SSPRGTRGFLSVLTFEGKIVYEEII 826
            +    R   ++L  +GK++YE II
Sbjct: 828 GNIEQDRNLFTILGHDGKLLYENII 852

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577797|ref|XP_003557009.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Glycine max]

 Score =  589 bits (1519), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 374/895 (41%), Positives = 516/895 (57%), Gaps = 108/895 (12%)

Query: 32  SDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTN 91
           S+   E +ALLKWK+SL N  + SL  SW+ NN     PC W GI C+    V++INLTN
Sbjct: 31  SEIASEANALLKWKSSLDNQSRASL-SSWSGNN-----PCIWLGIACDEFNSVSNINLTN 84

Query: 92  V------------------------NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI 127
           V                        N + G IPPQIG++SKL  LDLS N  SG IP  I
Sbjct: 85  VGLRGTLQNLNFSLLPNILTLNMSHNSLNGTIPPQIGSLSKLARLDLSDNFLSGEIPSTI 144

Query: 128 GNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALT 187
           GNLS L +L    N  SG IP  IG+L  ++++ L KN+LSG IP  +G LS L+ L++ 
Sbjct: 145 GNLSNLYYLSFYDNSLSGAIPSSIGNLVNLDSMILHKNKLSGSIPFIIGNLSKLSVLSIY 204

Query: 188 SNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFL 247
           SN L G IP S+GNL N+  L L+ N LSGSIP  IGNL  LS L +  N+L G IP  +
Sbjct: 205 SNELTGPIPTSIGNLVNMDSLLLYENKLSGSIPFTIGNLSKLSGLYISLNELTGPIPASI 264

Query: 248 GNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLY 307
           GNL NL+ + L  N  S SIP  IGNL  LS L +  N L G IP S+GNL NLD++ L+
Sbjct: 265 GNLVNLEAMRLFKNKLSGSIPFNIGNLSKLSKLSIHSNELTGPIPASIGNLVNLDSMILH 324

Query: 308 TNSLSGSIP------------------------SEIGNLKSLSGLELADNELSSSIPHYL 343
            N LSGSIP                        + IGNL  L  L L +N+LS SIP  +
Sbjct: 325 KNKLSGSIPFIIGNLSKFSVLSISFNELTGPIPASIGNLVHLDSLLLEENKLSGSIPFTI 384

Query: 344 GNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
           GNL+ L+  Y+  N L+G IP+ IGNL +L  + L +NKLSGSIP ++GNL+ L+ L +H
Sbjct: 385 GNLSKLSGLYISLNELTGPIPASIGNLVNLEAMRLFKNKLSGSIPFTIGNLSKLSKLSIH 444

Query: 404 SNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEEL 463
           SN L G IP  IGNL  L  L L +NKLS SI  ++GNL+ +++L++  N L+G IP  +
Sbjct: 445 SNELTGPIPASIGNLVHLDSLLLEENKLSGSIPFTIGNLSKLSVLSISLNELTGSIPSTI 504

Query: 464 GNL------------------VKLTMLT------LSDNQLQGSIP--------------- 484
           GNL                  ++++MLT      L+DN   G +P               
Sbjct: 505 GNLSNVRELFFIGNELGGKIPIEMSMLTALESLQLADNNFIGHLPQNICIGGTLKNFTAG 564

Query: 485 ----------NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDW 534
                     +L+N ++LIR+RL RN LT +I+++FG+ P L +I+LS NNFYGQ+S +W
Sbjct: 565 DNNFIGPIPVSLKNCSSLIRVRLQRNQLTGDITDAFGVLPNLDYIELSDNNFYGQLSPNW 624

Query: 535 GKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILR 594
           GK  +L +  +S NN+ G +PPE+  +++L  + LS+NH+ G IP ++  L  L  L L 
Sbjct: 625 GKFRSLTSLRISNNNLSGVIPPELAGATKLQRLQLSSNHLTGNIPHDLCNLP-LFDLSLD 683

Query: 595 RNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL 654
            N L G +P E+ S+ +L+ L L SN+LS  IP+ LGNL+ L  ++LS N F   IP +L
Sbjct: 684 NNNLTGNVPKEIASMQKLQILKLGSNKLSGLIPKQLGNLLNLWNMSLSQNNFQGNIPSEL 743

Query: 655 EKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDIS 714
            KL  L+ LDL  N L   IPS    ++SLE LNLSHNNLS  +   F++M  L  IDIS
Sbjct: 744 GKLKSLTSLDLGGNSLRGTIPSMFGELKSLETLNLSHNNLSGNL-SSFDDMTSLTSIDIS 802

Query: 715 YNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKAS--KSHKPASRKIWVVIVFP 772
           YN+  GP+PN  AF +A +EAL+ N+GLCG++ G + C  S  KSH    +K+ +VI+  
Sbjct: 803 YNQFEGPLPNILAFHNAKIEALRNNKGLCGNVTGLEPCSTSSGKSHNHMRKKVMIVILPL 862

Query: 773 LLGTVALLISLIALFFIFRRRKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEIIR 827
            LG + L +    +++   +     +  Q++   T    ++ +F+GK+V+E II 
Sbjct: 863 TLGILILALFAFGVWYHLCQTSTNKED-QATSIQTPNIFAIWSFDGKMVFENIIE 916

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484864|ref|XP_002273966.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 367/798 (45%), Positives = 477/798 (59%), Gaps = 64/798 (8%)

Query: 33  DSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCA-WFGIHCNHVGRVNSINLTN 91
           +  +E  ALL WK+SL    + S L SW+      +SPC  WFG+ C+    V+S+NL  
Sbjct: 53  EQEKEALALLTWKSSLHIRSQ-SFLSSWS-----GVSPCNNWFGVTCHKSKSVSSLNL-- 104

Query: 92  VNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI 151
                                   S    GT       L  L FL L             
Sbjct: 105 -----------------------ESCGLRGT-------LYNLNFLSLPN----------- 123

Query: 152 GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH 211
                +  L L+ N LSG IP E+G L SLN L L++N L G IPPS+GNL NL  LYLH
Sbjct: 124 -----LVTLDLYNNSLSGSIPQEIGLLRSLNNLKLSTNNLSGPIPPSIGNLRNLTTLYLH 178

Query: 212 NNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEI 271
            N LSGSIP EIG L+SL+ L L  N L G IP  +GNL NL TLYL  N  S SIP EI
Sbjct: 179 TNKLSGSIPQEIGLLRSLNDLELSANNLSGPIPPSIGNLRNLTTLYLHTNKLSGSIPQEI 238

Query: 272 GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELA 331
           G L+SL+ LEL  N LNG IP S+GNL NL TLYL+TN LSGSIP EIG L+SL+ LEL+
Sbjct: 239 GLLRSLNDLELSTNNLNGPIPPSIGNLRNLTTLYLHTNKLSGSIPKEIGMLRSLNDLELS 298

Query: 332 DNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSL 391
            N L+  IP  +G L NL   YL+ N LSGSIP EIG L+SL NL LS N LSG IP  +
Sbjct: 299 TNNLNGPIPPSIGKLRNLTTLYLHNNKLSGSIPLEIGLLRSLFNLSLSTNNLSGPIPPFI 358

Query: 392 GNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALY 451
           GNL NL  LYL +N   GSIPREIG L+SL +L L  NKLS  I   + NL H+  L L 
Sbjct: 359 GNLRNLTKLYLDNNRFSGSIPREIGLLRSLHDLALATNKLSGPIPQEIDNLIHLKSLHLE 418

Query: 452 DNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESF 510
           +N  +G +P+++     L   T   N   G IP +LRN T+L R+RL RN L  NI+E F
Sbjct: 419 ENNFTGHLPQQMCLGGALENFTAMGNHFTGPIPMSLRNCTSLFRVRLERNQLEGNITEVF 478

Query: 511 GIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLS 570
           G++P L F+DLS NN YG++S  WG+C +L + ++S NN+ G +PP++G++ QLH +DLS
Sbjct: 479 GVYPNLNFMDLSSNNLYGELSHKWGQCGSLTSLNISHNNLSGIIPPQLGEAIQLHRLDLS 538

Query: 571 ANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSL 630
           +NH++GKIP E+GKL+S+  L+L  NQL G +P E+G+L  LE+L L+SN LS SIP+ L
Sbjct: 539 SNHLLGKIPRELGKLTSMFHLVLSNNQLSGNIPLEVGNLFNLEHLSLTSNNLSGSIPKQL 598

Query: 631 GNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLS 690
           G L KL +LNLS N+F + IP ++  +  L  LDLS N L  +IP Q+  ++ LE LNLS
Sbjct: 599 GMLSKLFFLNLSKNKFGESIPDEIGNMHSLQNLDLSQNMLNGKIPQQLGELQRLETLNLS 658

Query: 691 HNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQ 750
           HN LS  IP  FE+M  L  +DIS N+L GP+P+  AF +A  EA   N GLCG+  G +
Sbjct: 659 HNELSGSIPSTFEDMLSLTSVDISSNQLEGPLPDIKAFQEAPFEAFMSNGGLCGNATGLK 718

Query: 751 SCKASKSHKPASRKIWVVIVFPLLGTVALL-ISLIALFFIFRRRKNALQTLQSSPRGTRG 809
            C    + K   R + ++I      TV LL IS+   F ++ R +N  +  +SS      
Sbjct: 719 PC-IPFTQKKNKRSMILIIS----STVFLLCISMGIYFTLYWRARN--RKGKSSETPCED 771

Query: 810 FLSVLTFEGKIVYEEIIR 827
             ++   +G I+Y++II 
Sbjct: 772 LFAIWDHDGGILYQDIIE 789

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456159|ref|XP_002278561.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  582 bits (1501), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 331/678 (48%), Positives = 440/678 (64%), Gaps = 32/678 (4%)

Query: 180 SLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNK 238
           S+ ++ LT + L G++   S  +  NLA + +  N+LSG IP +IG L  L  L L  N+
Sbjct: 89  SVIKINLTESGLNGTLMDFSFSSFPNLAYVDISMNNLSGPIPPQIGLLFELKYLDLSINQ 148

Query: 239 LCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNL 298
             G IP  +G LTNL+ L+L  N  + SIP EIG L SL  L L  N+L GSIP SLGNL
Sbjct: 149 FSGGIPSEIGLLTNLEVLHLVQNQLNGSIPHEIGQLASLYELALYTNQLEGSIPASLGNL 208

Query: 299 TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS 358
           +NL +LYLY N LSGSIP E+GNL +L  +   +N L+  IP   GNL  L   YL+ NS
Sbjct: 209 SNLASLYLYENQLSGSIPPEMGNLTNLVEIYSNNNNLTGPIPSTFGNLKRLTVLYLFNNS 268

Query: 359 LSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNL 418
           LSG IP EIGNLKSL  L L EN LSG IP SL +L+ L +L+L++N L G IP+EIGNL
Sbjct: 269 LSGPIPPEIGNLKSLQELSLYENNLSGPIPVSLCDLSGLTLLHLYANQLSGPIPQEIGNL 328

Query: 419 KSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 478
           KSL +L+L +N+L+ SI  SLGNLT++ +L L DN LSG IP+E+G L KL +L +  NQ
Sbjct: 329 KSLVDLELSENQLNGSIPTSLGNLTNLEILFLRDNQLSGYIPQEIGKLHKLVVLEIDTNQ 388

Query: 479 LQGSIP-------------------------NLRNLTNLIRLRLNRNHLTCNISESFGIH 513
           L GS+P                         +L+N  NL R     N LT NISE  G  
Sbjct: 389 LFGSLPEGICQAGSLVRFAVSDNHLSGPIPKSLKNCRNLTRALFQGNRLTGNISEVVGDC 448

Query: 514 PKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANH 573
           P L FIDLS+N F+G++S +WG+CP L   +++ NNI GS+P + G S+ L ++DLS+NH
Sbjct: 449 PNLEFIDLSYNRFHGELSHNWGRCPQLQRLEIAGNNITGSIPEDFGISTNLTLLDLSSNH 508

Query: 574 IIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNL 633
           ++G+IP ++G L+SL+ LIL  NQL G +P ELGSL  LEYLDLS+NRL+ SIP  LG+ 
Sbjct: 509 LVGEIPKKMGSLTSLLGLILNDNQLSGSIPPELGSLSHLEYLDLSANRLNGSIPEHLGDC 568

Query: 634 VKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNN 693
           + LHYLNLS N+    IP+++ KL HLS+LDLSHN L   IP QI  ++SLEML+LSHNN
Sbjct: 569 LDLHYLNLSNNKLSHGIPVQMGKLSHLSQLDLSHNLLAGGIPPQIQGLQSLEMLDLSHNN 628

Query: 694 LSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCK 753
           L  FIP+ FE+M  L Y+DISYN+L GPIP+S AF +A +E L+GN+ LCG++KG Q CK
Sbjct: 629 LCGFIPKAFEDMPALSYVDISYNQLQGPIPHSNAFRNATIEVLKGNKDLCGNVKGLQPCK 688

Query: 754 ----ASKSHKPASRKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQSSPRGTRG 809
                 +     S K+  +I+FPLLG + LL + I +F I  RR+   +  +   +    
Sbjct: 689 YGFGVDQQPVKKSHKVVFIIIFPLLGALVLLFAFIGIFLIAERRERTPEIEEGDVQ--ND 746

Query: 810 FLSVLTFEGKIVYEEIIR 827
             S+  F+G+ +YEEII+
Sbjct: 747 LFSISNFDGRTMYEEIIK 764

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456161|ref|XP_002278590.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 333/678 (49%), Positives = 440/678 (64%), Gaps = 32/678 (4%)

Query: 180 SLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNK 238
           S+  + LT + L G++   S  +  NLA + +  N+LSG IP +IG L  L  L L  N+
Sbjct: 89  SVIRINLTESGLGGTLQAFSFSSFPNLAYVDISMNNLSGPIPPQIGLLSKLKYLDLSINQ 148

Query: 239 LCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNL 298
             G IP  +G LTNL+ L+L  N  + SIP EIG L SL  L L  N+L GSIP SLGNL
Sbjct: 149 FSGGIPPEIGLLTNLEVLHLVQNQLNGSIPHEIGQLTSLYELALYTNQLEGSIPASLGNL 208

Query: 299 TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS 358
           +NL +LYLY N LSGSIP E+GNL +L  L    N L+  IP   GNL +L   YL+ NS
Sbjct: 209 SNLASLYLYENQLSGSIPPEMGNLTNLVQLYSDTNNLTGPIPSTFGNLKHLTVLYLFNNS 268

Query: 359 LSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNL 418
           LSG IP EIGNLKSL  L L  N LSG IP SL +L+ L +L+L++N L G IP+EIGNL
Sbjct: 269 LSGPIPPEIGNLKSLQGLSLYGNNLSGPIPVSLCDLSGLTLLHLYANQLSGPIPQEIGNL 328

Query: 419 KSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTML------ 472
           KSL +L+L +N+L+ SI  SLGNLT++ +L L DN LSG  P+E+G L KL +L      
Sbjct: 329 KSLVDLELSENQLNGSIPTSLGNLTNLEILFLRDNRLSGYFPQEIGKLHKLVVLEIDTNQ 388

Query: 473 ------------------TLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFGIH 513
                             T+SDN L G IP +L+N  NL R     N LT N+SE  G  
Sbjct: 389 LFGSLPEGICQGGSLERFTVSDNHLSGPIPKSLKNCRNLTRALFQGNRLTGNVSEVVGDC 448

Query: 514 PKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANH 573
           P L FIDLS+N F+G++S +WG+CP L   +++ NNI GS+P + G S+ L ++DLS+NH
Sbjct: 449 PNLEFIDLSYNRFHGELSHNWGRCPQLQRLEIAGNNITGSIPEDFGISTNLILLDLSSNH 508

Query: 574 IIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNL 633
           ++G+IP ++G L+SL+ LIL  NQL G +P ELGSL  LEYLDLS+NRL+ SIP  LG+ 
Sbjct: 509 LVGEIPKKMGSLTSLLGLILNDNQLSGSIPPELGSLSHLEYLDLSANRLNGSIPEHLGDC 568

Query: 634 VKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNN 693
           + LHYLNLS N+    IP+++ KL HLS+LDLSHN L   IP+QI  + SLEML+LSHNN
Sbjct: 569 LDLHYLNLSNNKLSHGIPVQMGKLSHLSQLDLSHNLLTGGIPAQIQGLESLEMLDLSHNN 628

Query: 694 LSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCK 753
           L  FIP+ FE+M  L Y+DISYN+L GPIP+S AF +A +E L+GN+ LCG++KG Q CK
Sbjct: 629 LCGFIPKAFEDMPALSYVDISYNQLQGPIPHSNAFRNATIEVLKGNKDLCGNVKGLQPCK 688

Query: 754 ----ASKSHKPASRKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQSSPRGTRG 809
                 +     S K+  +I+FPLLG + LL + I +F I  RR+   +  +   +    
Sbjct: 689 YGFGVDQQPVKKSHKVVFIIIFPLLGALVLLSAFIGIFLIAERRERTPEIEEGDVQNN-- 746

Query: 810 FLSVLTFEGKIVYEEIIR 827
            LS+ TF+G+ +YEEII+
Sbjct: 747 LLSISTFDGRAMYEEIIK 764

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487164|ref|XP_003633525.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 360/825 (43%), Positives = 490/825 (59%), Gaps = 94/825 (11%)

Query: 92   VNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI 151
             N + G IPP I N+  L  L L  N  SG+IP +IG L  L +L LS N  SG I P I
Sbjct: 252  TNNLSGPIPPSIENLRNLTTLYLYQNELSGSIPQEIGLLISLNYLALSTNNLSGPILPSI 311

Query: 152  GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH 211
            G+L  +  L+L++N+L G IP E+G L SLN+L L++N L G IPPS+GNL NL  LYLH
Sbjct: 312  GNLRNLTTLYLYQNELFGLIPQEIGLLRSLNDLELSTNNLSGPIPPSIGNLRNLTTLYLH 371

Query: 212  NNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIP--- 268
             N LS SIP EIG L+SL++LAL  N L G IP  +GNL NL  LYL NN  S  IP   
Sbjct: 372  RNELSSSIPQEIGLLRSLNNLALSTNNLSGPIPPSIGNLRNLTNLYLYNNELSGPIPQEI 431

Query: 269  ------------------------------------SEIGNLKSLSILELGENRLNGSIP 292
                                                SEIG L+SL  L+L  N L GSIP
Sbjct: 432  GLLRSLIELDLSDNNLTGSTPTSIGNLGNKLSGFIPSEIGLLRSLKDLDLSNNNLIGSIP 491

Query: 293  LSLGNLTNLDTLYLYTNSLSGSIPSEI------------------------GNLKSLSGL 328
             S+GNL+NL TL++++N L+GSIP +I                        G L SL+ L
Sbjct: 492  TSIGNLSNLVTLFVHSNKLNGSIPQDIHLLSSLSVLALSNNNLSGIIPHSLGKLGSLTAL 551

Query: 329  ELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIP 388
             L +N LS SIP+ +GNL+ L    L+ N L GSIP E+G L+SL  LD S NKL+GSIP
Sbjct: 552  YLRNNSLSGSIPYSIGNLSKLDTLDLHSNQLFGSIPREVGFLRSLFALDSSNNKLTGSIP 611

Query: 389  HSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLL 448
             S+GNL NL  L++  N L GSIP+E+G LKSL +L L DNK++ SI  S+GNL ++T+L
Sbjct: 612  TSIGNLVNLTTLHISKNQLSGSIPQEVGWLKSLDKLDLSDNKITGSIPASIGNLGNLTVL 671

Query: 449  ALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN----------------------- 485
             L DN ++G IP E+ +L +L  L LS+N L G +P+                       
Sbjct: 672  YLSDNKINGSIPPEMRHLTRLRSLELSENHLTGQLPHEICLGGVLENFTAEGNHLTGSIP 731

Query: 486  --LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTF 543
              LRN T+L R+RL RN L  NI+E FGI+P L FIDLS+N  YG++S  WG+C +L + 
Sbjct: 732  KSLRNCTSLFRVRLERNQLAGNITEDFGIYPNLLFIDLSYNKLYGELSHKWGQCNSLTSL 791

Query: 544  DVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLP 603
             +S NNI G +P ++G++++L  +DLS+NH++G+IP E+G L SL  L++  N+L G +P
Sbjct: 792  KISNNNISGMIPHQLGEATKLEQLDLSSNHLVGEIPKELGMLKSLFNLVIDNNKLSGNIP 851

Query: 604  SELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSEL 663
             E G+L  L +L+L+SN LS  IP+ + N  KL  LNLS N+F + IP ++  +I L  L
Sbjct: 852  LEFGNLSDLVHLNLASNHLSGPIPQQVRNFRKLLSLNLSNNKFGESIPAEIGNVITLESL 911

Query: 664  DLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIP 723
            DL  N L  EIP Q+  ++SLE LNLSHNNLS  IP  F+++ GL  I+ISYN+L GP+P
Sbjct: 912  DLCQNMLTGEIPQQLGELQSLETLNLSHNNLSGTIPPTFDDLRGLTSINISYNQLEGPLP 971

Query: 724  NSTAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVVIVFPLLGTVALLISL 783
            N  AF DA  EAL+ N+GLCG+I G ++C   K  K  ++   ++I+  L   +   IS 
Sbjct: 972  NLKAFRDAPFEALRNNKGLCGNITGLEACNTGK--KKGNKFFLLIILLILSIPLLSFIS- 1028

Query: 784  IALFFIFRRRKNALQTLQSSPRGT-RGFLSVLTFEGKIVYEEIIR 827
              ++F+  RR    + + S    T +   ++   +G+++YE II 
Sbjct: 1029 YGIYFL--RRMVRSRKINSREVATHQDLFAIWGHDGEMLYEHIIE 1071

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	869
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.842	0.653	0.412	1.5e-138
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.772	0.642	0.381	5.2e-113
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.724	0.571	0.401	8.6e-104
TAIR|locus:2032697	1123	PEPR1 "PEP1 receptor 1" [Arabi	0.819	0.634	0.346	6e-103
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.850	0.650	0.337	1.5e-102
UNIPROTKB|P93194	1109	INRPK1 "Receptor-like protein	0.781	0.612	0.355	4.2e-102
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.751	0.522	0.368	2.8e-101
TAIR|locus:2020417	1101	AT1G17230 [Arabidopsis thalian	0.776	0.613	0.369	7.9e-101
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.749	0.519	0.375	4.4e-100
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.780	0.603	0.359	7.1e-100

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 1356 (482.4 bits), Expect = 1.5e-138, P = 1.5e-138
 Identities = 305/740 (41%), Positives = 427/740 (57%)

Query:    91 NVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQ 150
             ++N + G IPPQ GN+SKL Y DLS+N  +G I P +GNL  L  LYL  N  +  IP +
Sbjct:   110 SMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSE 169

Query:   151 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL 210
             +G++  +  L L +N+L+G IP  +G L +L  L L  N+L G IPP LGN+ ++  L L
Sbjct:   170 LGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLAL 229

Query:   211 HNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSE 270
               N L+GSIPS +GNLK+L  L L  N L G IP  +GN+ ++  L L  N  + SIPS 
Sbjct:   230 SQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSS 289

Query:   271 IGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLKSLSGLEL 330
             +GNLK+L++L L +N L G IP                    GSIPS +GNLK+L+ L L
Sbjct:   290 LGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYL 349

Query:   331 ADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHS 390
              +N L+  IP  LGN+ ++    L  N L+GSIPS  GNLK+L+ L L  N L+G IP  
Sbjct:   350 YENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQE 409

Query:   391 LGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLAL 450
             LGN+ ++  L L  N L GS+P   GN   L  L L  N LS +I   + N +H+T L L
Sbjct:   410 LGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSHLTTLIL 469

Query:   451 YDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXH-LTCNISES 509
               N  +G  PE +    KL  ++L  N L+G IP                +  T +I E+
Sbjct:   470 DTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEA 529

Query:   510 FGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDL 569
             FGI+P L FID SHN F+G+ISS+W K P LG   +S NNI G++P EI + +QL  +DL
Sbjct:   530 FGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIPTEIWNMTQLVELDL 589

Query:   570 SANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRS 629
             S N++ G++P  IG            NQL G++P+ L  L  LE LDLSSN  S+ IP++
Sbjct:   590 STNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQT 649

Query:   630 LGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL 689
               + +KLH +NLS N+F   IP +L KL  L++LDLSHN L  EIPSQ+ +++SL+ L+L
Sbjct:   650 FDSFLKLHDMNLSRNKFDGSIP-RLSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDL 708

Query:   690 SHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDI--K 747
             SHNNLS  IP  FE M  L  +DIS N+L GP+P++  F  A  +AL+ N GLC +I  +
Sbjct:   709 SHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPTFRKATADALEENIGLCSNIPKQ 768

Query:   748 GFQSCKA-SKSHKPASRKIWVVIVFPLLGTVXXXXXXXXXXXXXXXXKNALQTLQSSPRG 806
               + C+   K  K  +  +W+++  P+LG V                K  LQ  +++   
Sbjct:   769 RLKPCRELKKPKKNGNLVVWILV--PILG-VLVILSICANTFTYCIRKRKLQNGRNTDPE 825

Query:   807 TRGFLSVLTFEGKIVYEEII 826
             T   +S+ + +GK  Y++II
Sbjct:   826 TGENMSIFSVDGKFKYQDII 845

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 1115 (397.6 bits), Expect = 5.2e-113, P = 5.2e-113
 Identities = 260/682 (38%), Positives = 377/682 (55%)

Query:   154 LSYIEALHLFKNQLSGPIPH-EVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN 212
             L  I  L+L    + G         L +L  + L+ N   G+I P  G  + L    L  
Sbjct:    92 LGSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSI 151

Query:   213 NSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIG 272
             N L G IP E+G+L +L +L L  NKL GSIP  +G LT +  + + +N  +  IPS  G
Sbjct:   152 NQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFG 211

Query:   273 NLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLKSLSGLELAD 332
             NL  L  L L  N L+GSIP                    G IPS  GNLK+++ L + +
Sbjct:   212 NLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFE 271

Query:   333 NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLG 392
             N+LS  IP  +GN+T L    L+ N L+G IPS +GN+K+L+ L L  N+L+GSIP  LG
Sbjct:   272 NQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELG 331

Query:   393 NLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYD 452
              + ++  L +  N L G +P   G L +L  L L DN+LS  I   + N T +T+L L  
Sbjct:   332 EMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDT 391

Query:   453 NALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXH-LTCNISESFG 511
             N  +G +P+ +    KL  LTL DN  +G +P                +  + +ISE+FG
Sbjct:   392 NNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFG 451

Query:   512 IHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSA 571
             ++P L FIDLS+NNF+GQ+S++W +   L  F +S N+I G++PPEI + +QL  +DLS+
Sbjct:   452 VYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSS 511

Query:   572 NHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLG 631
             N I G++P  I             N+L G++PS +  L  LEYLDLSSNR S+ IP +L 
Sbjct:   512 NRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLN 571

Query:   632 NLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSH 691
             NL +L+Y+NLS N   Q IP  L KL  L  LDLS+N L  EI SQ  ++++LE L+LSH
Sbjct:   572 NLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSH 631

Query:   692 NNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDI---KG 748
             NNLS  IP  F++M  L ++D+S+N L GPIP++ AF +A  +A +GN+ LCG +   +G
Sbjct:   632 NNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQG 691

Query:   749 FQSCK---ASKSHKPASRKIWVVIVFPLLGTVXXXXXXXXXXXXXXXXKNALQTLQSSPR 805
              + C    + KSHK   R + + I+ P++G +                   ++    S  
Sbjct:   692 LKPCSITSSKKSHK--DRNLIIYILVPIIGAIIILSVCAGIFICFRKRTKQIEEHTDSES 749

Query:   806 GTRGFLSVLTFEGKIVYEEIIR 827
             G    LS+ +F+GK+ Y+EII+
Sbjct:   750 GGET-LSIFSFDGKVRYQEIIK 770

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
 Identities = 255/635 (40%), Positives = 340/635 (53%)

Query:   112 LDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPI 171
             L+LSS   SG + P IG L  LK L LS N  SG+IP +IG+ S +E L L  NQ  G I
Sbjct:    78 LNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEI 137

Query:   172 PHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSS 231
             P E+G L SL  L + +N + GS+P  +GNL +L+ L  ++N++SG +P  IGNLK L+S
Sbjct:   138 PVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTS 197

Query:   232 LALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSI 291
                G N + GS+P  +G   +L  L L  N  S  +P EIG LK LS + L EN  +G I
Sbjct:   198 FRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFI 257

Query:   292 PLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAA 351
             P                    G IP E+G+L+SL  L L  N L+ +IP  +GNL+    
Sbjct:   258 PREISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIE 317

Query:   352 FYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSI 411
                 +N+L+G IP E+GN++ L  L L EN+L+G+IP  L  L NL+ L L  N L G I
Sbjct:   318 IDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPI 377

Query:   412 PREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTM 471
             P     L+ LF LQL  N LS +I   LG  + + +L + DN LSG IP  L     + +
Sbjct:   378 PLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMII 437

Query:   472 LTLSDNQLQGSIPXXXXX-XXXXXXXXXXXHLTCNISESFGIHPKLTFIDLSHNNFYGQI 530
             L L  N L G+IP                 +L      +      +T I+L  N F G I
Sbjct:   438 LNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSI 497

Query:   531 SSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXX 590
               + G C  L    ++ N   G LP EIG  SQL  +++S+N + G++PSEI        
Sbjct:   498 PREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQR 557

Query:   591 XXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEI 650
                  N   G LPSE+GSL QLE L LS+N LS +IP +LGNL +L  L +  N F   I
Sbjct:   558 LDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSI 617

Query:   651 PIKLEKLIHLS-ELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLL 709
             P +L  L  L   L+LS+N L  EIP ++ N+  LE L L++NNLS  IP  F  ++ LL
Sbjct:   618 PRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLL 677

Query:   710 YIDISYNELHGPIPNSTAFSDALMEALQGNEGLCG 744
               + SYN L GPIP     S   M +  GNEGLCG
Sbjct:   678 GYNFSYNSLTGPIPLLRNIS---MSSFIGNEGLCG 709

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2032697 PEPR1 "PEP1 receptor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
 Identities = 254/734 (34%), Positives = 376/734 (51%)

Query:    59 SWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNS 118
             +W +N A++ +PC WFGI C+    V S+N T  +++ G + P+IG +  L+ LDLS+N+
Sbjct:    53 TWKIN-ASEATPCNWFGITCDDSKNVASLNFTR-SRVSGQLGPEIGELKSLQILDLSTNN 110

Query:   119 FSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGL 178
             FSGTIP  +GN + L  L LS N FS +IP  +  L  +E L+L+ N L+G +P  +  +
Sbjct:   111 FSGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLYINFLTGELPESLFRI 170

Query:   179 SSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNK 238
               L  L L  N L G IP S+G+   L  L ++ N  SG+IP  IGN  SL  L L  NK
Sbjct:   171 PKLQVLYLDYNNLTGPIPQSIGDAKELVELSMYANQFSGNIPESIGNSSSLQILYLHRNK 230

Query:   239 LCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXX 298
             L GS+P  L  L NL TL++ NNS    +     N K+L  L+L  N   G +P +    
Sbjct:   231 LVGSLPESLNLLGNLTTLFVGNNSLQGPVRFGSPNCKNLLTLDLSYNEFEGGVPPALGNC 290

Query:   299 XXXXXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS 358
                           G+IPS +G LK+L+ L L++N LS SIP  LGN ++L    L  N 
Sbjct:   291 SSLDALVIVSGNLSGTIPSSLGMLKNLTILNLSENRLSGSIPAELGNCSSLNLLKLNDNQ 350

Query:   359 LSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNL 418
             L G IPS +G L+ L +L+L EN+ SG IP  +    +L  L ++ N L G +P E+  +
Sbjct:   351 LVGGIPSALGKLRKLESLELFENRFSGEIPIEIWKSQSLTQLLVYQNNLTGELPVEMTEM 410

Query:   419 KSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 478
             K L    L +N    +I   LG  + +  +    N L+G IP  L +  KL +L L  N 
Sbjct:   411 KKLKIATLFNNSFYGAIPPGLGVNSSLEEVDFIGNKLTGEIPPNLCHGRKLRILNLGSNL 470

Query:   479 LQGSIPXXXXXXXXXXXXXXXXHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCP 538
             L G+IP                +    +   F     L+F+D + NNF G I    G C 
Sbjct:   471 LHGTIPASIGHCKTIRRFILRENNLSGLLPEFSQDHSLSFLDFNSNNFEGPIPGSLGSCK 530

Query:   539 NLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQL 598
             NL + ++S N   G +PP++G+   L  ++LS N + G +P+++             N L
Sbjct:   531 NLSSINLSRNRFTGQIPPQLGNLQNLGYMNLSRNLLEGSLPAQLSNCVSLERFDVGFNSL 590

Query:   599 FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL---E 655
              G +PS   +   L  L LS NR S  IP+ L  L KL  L ++ N F  EIP  +   E
Sbjct:   591 NGSVPSNFSNWKGLTTLVLSENRFSGGIPQFLPELKKLSTLQIARNAFGGEIPSSIGLIE 650

Query:   656 KLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISY 715
              LI+  +LDLS N L  EIP+++ ++  L  LN+S+NNL+  +    + +  LL++D+S 
Sbjct:   651 DLIY--DLDLSGNGLTGEIPAKLGDLIKLTRLNISNNNLTGSLS-VLKGLTSLLHVDVSN 707

Query:   716 NELHGPIPNSTAFSDALME--ALQGNEGLC---------GDIKGFQSCK-ASKSHKPASR 763
             N+  GPIP++      L E  +  GN  LC               + CK  SKS K +  
Sbjct:   708 NQFTGPIPDNLE-GQLLSEPSSFSGNPNLCIPHSFSASNNSRSALKYCKDQSKSRK-SGL 765

Query:   764 KIWVVIVFPLLGTV 777
               W +++  +L ++
Sbjct:   766 STWQIVLIAVLSSL 779

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045087 "innate immune response" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0006955 "immune response" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 993 (354.6 bits), Expect = 1.5e-102, Sum P(2) = 1.5e-102
 Identities = 255/756 (33%), Positives = 373/756 (49%)

Query:    27 PLIVYSDSTE-EVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHC-NHVGRV 84
             PL+ Y+D ++ E+ AL  +K +L  HD    L SW  + +T  +PC W G+ C NH  RV
Sbjct:    17 PLVSYADESQAEIDALTAFKLNL--HDPLGALTSW--DPSTPAAPCDWRGVGCTNH--RV 70

Query:    85 NSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFS 144
               I L  + Q+ G I  +I  +  L+ L L SNSF+GTIP  +   + L  ++L  N  S
Sbjct:    71 TEIRLPRL-QLSGRISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLS 129

Query:   145 GRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTN 204
             G++PP + +L+ +E  ++  N+LSG IP  VG  SSL  L ++SN   G IP  L NLT 
Sbjct:   130 GKLPPAMRNLTSLEVFNVAGNRLSGEIP--VGLPSSLQFLDISSNTFSGQIPSGLANLTQ 187

Query:   205 LAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFS 264
             L +L L  N L+G IP+ +GNL+SL  L L  N L G++P  + N ++L  L    N   
Sbjct:   188 LQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIG 247

Query:   265 SSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSI-PSEIGNLK 323
               IP+  G L  L +L L  N  +G++P S                    + P    N +
Sbjct:   248 GVIPAAYGALPKLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTANCR 307

Query:   324 S-LSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENK 382
             + L  L+L +N +S   P +L N+ +L    +  N  SG IP +IGNLK L  L L+ N 
Sbjct:   308 TGLQVLDLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNS 367

Query:   383 LSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNL 442
             L+G IP  +    +L +L    N+L G IP  +G +K+L  L LG N  S  +  S+ NL
Sbjct:   368 LTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNL 427

Query:   443 THMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXH- 501
               +  L L +N L+G  P EL  L  L+ L LS N+  G++P                + 
Sbjct:   428 QQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNG 487

Query:   502 LTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS 561
              +  I  S G   KLT +DLS  N  G++  +    PN+    +  NN  G +P      
Sbjct:   488 FSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSL 547

Query:   562 SQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNR 621
               L  ++LS+N   G+IP   G            N + G +P E+G+   LE L+L SNR
Sbjct:   548 VSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNR 607

Query:   622 LSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNM 681
             L   IP  L  L +L  L+L  N    EIP ++ +   L+ L L HN L   IP     +
Sbjct:   608 LMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGL 667

Query:   682 RSLEMLNLSHNNLSDFIPRCFEEMNG-LLYIDISYNELHGPIPNSTAFSDALMEALQGNE 740
              +L  ++LS NNL+  IP     ++  L+Y ++S N L G IP S            GN 
Sbjct:   668 SNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRINNTSEFSGNT 727

Query:   741 GLCGDIKGFQSCKASKSH-KPASRKIWVVIVFPLLG 775
              LCG     + C++S +  K   RK+ ++IV   +G
Sbjct:   728 ELCGKPLN-RRCESSTAEGKKKKRKMILMIVMAAIG 762

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

UNIPROTKB|P93194 INRPK1 "Receptor-like protein kinase" [Ipomoea nil (taxid:35883)]

 Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
 Identities = 244/686 (35%), Positives = 346/686 (50%)

Query:    59 SWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNS 118
             SW   NA+  +PC+W G+ C+    V+++NL++   I G   P+I ++  LK + LS N 
Sbjct:    48 SW---NASDSTPCSWLGVECDRRQFVDTLNLSSYG-ISGEFGPEISHLKHLKKVVLSGNG 103

Query:   119 FSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGL 178
             F G+IP Q+GN S+L+ + LS+N F+G IP  +G L  +  L LF N L GP P  +  +
Sbjct:   104 FFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSLFFNSLIGPFPESLLSI 163

Query:   179 SSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNK 238
               L  +  T N L GSIP ++GN++ L  L+L +N  SG +PS +GN+ +L  L L +N 
Sbjct:   164 PHLETVYFTGNGLNGSIPSNIGNMSELTTLWLDDNQFSGPVPSSLGNITTLQELYLNDNN 223

Query:   239 LCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXX 298
             L G++P+ L NL NL  L +RNNS   +IP +  + K +  + L  N+  G +P      
Sbjct:   224 LVGTLPVTLNNLENLVYLDVRNNSLVGAIPLDFVSCKQIDTISLSNNQFTGGLPPGLGNC 283

Query:   299 XXXXXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS 358
                           G IPS  G L  L  L LA N  S  IP  LG   ++    L +N 
Sbjct:   284 TSLREFGAFSCALSGPIPSCFGQLTKLDTLYLAGNHFSGRIPPELGKCKSMIDLQLQQNQ 343

Query:   359 LSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNL 418
             L G IP E+G L  L  L L  N LSG +P S+  + +L  L L+ N L G +P ++  L
Sbjct:   344 LEGEIPGELGMLSQLQYLHLYTNNLSGEVPLSIWKIQSLQSLQLYQNNLSGELPVDMTEL 403

Query:   419 KSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 478
             K L  L L +N  +  I   LG  + + +L L  N  +G IP  L +  KL  L L  N 
Sbjct:   404 KQLVSLALYENHFTGVIPQDLGANSSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNY 463

Query:   479 LQGSIPXXXXXXXXXXXXXXXXHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCP 538
             L+GS+P                +        F     L F DLS NNF G I    G   
Sbjct:   464 LEGSVPSDLGGCSTLERLILEENNLRGGLPDFVEKQNLLFFDLSGNNFTGPIPPSLGNLK 523

Query:   539 NLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQL 598
             N+    +S N + GS+PPE+G   +L  ++LS N + G +PSE+             N L
Sbjct:   524 NVTAIYLSSNQLSGSIPPELGSLVKLEHLNLSHNILKGILPSELSNCHKLSELDASHNLL 583

Query:   599 FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLI 658
              G +PS LGSL +L  L L  N  S  IP SL    KL  L L  N    +IP  +  L 
Sbjct:   584 NGSIPSTLGSLTELTKLSLGENSFSGGIPTSLFQSNKLLNLQLGGNLLAGDIP-PVGALQ 642

Query:   659 HLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
              L  L+LS N L  ++P  +  ++ LE L++SHNNLS  + R    +  L +I+IS+N  
Sbjct:   643 ALRSLNLSSNKLNGQLPIDLGKLKMLEELDVSHNNLSGTL-RVLSTIQSLTFINISHNLF 701

Query:   719 HGPIPNS-TAFSDALMEALQGNEGLC 743
              GP+P S T F ++   +  GN  LC
Sbjct:   702 SGPVPPSLTKFLNSSPTSFSGNSDLC 727

GO:0005524 "ATP binding" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0019199 "transmembrane receptor protein kinase activity" evidence=NAS

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 985 (351.8 bits), Expect = 2.8e-101, Sum P(2) = 2.8e-101
 Identities = 242/657 (36%), Positives = 334/657 (50%)

Query:    93 NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIG 152
             NQ+ G IP Q+G++  ++ L +  N   G IP  +GNL  L+ L L++ + +G IP Q+G
Sbjct:   129 NQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLG 188

Query:   153 HLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN 212
              L  +++L L  N L GPIP E+G  S L       N L G+IP  LG L NL IL L N
Sbjct:   189 RLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLAN 248

Query:   213 NSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIG 272
             NSL+G IPS++G +  L  L+L  N+L G IP  L +L NL TL L  N+ +  IP E  
Sbjct:   249 NSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFW 308

Query:   273 NLKSLSILELGENRLNGSIPLSX-XXXXXXXXXXXXXXXXXGSIPSEIGNLKSLSGLELA 331
             N+  L  L L  N L+GS+P S                   G IP E+   +SL  L+L+
Sbjct:   309 NMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLS 368

Query:   332 DNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSL 391
             +N L+ SIP  L  L  L   YL+ N+L G++   I NL +L  L L  N L G +P  +
Sbjct:   369 NNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEI 428

Query:   392 GNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALY 451
               L  L +L+L+ N   G IP+EIGN  SL  + +  N     I  S+G L  + LL L 
Sbjct:   429 SALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLR 488

Query:   452 DNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXH-LTCNISESF 510
              N L G +P  LGN  +L +L L+DNQL GSIP                + L  N+ +S 
Sbjct:   489 QNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSL 548

Query:   511 GIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLS 570
                  LT I+LSHN   G I    G    L +FDV+ N     +P E+G+S  L  + L 
Sbjct:   549 ISLRNLTRINLSHNRLNGTIHPLCGSSSYL-SFDVTNNGFEDEIPLELGNSQNLDRLRLG 607

Query:   571 ANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSL 630
              N + GKIP  +G            N L G +P +L    +L ++DL++N LS  IP  L
Sbjct:   608 KNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWL 667

Query:   631 GNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLS 690
             G L +L  L LS+NQF++ +P +L     L  L L  N L   IP +I N+ +L +LNL 
Sbjct:   668 GKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLD 727

Query:   691 HNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQ-GNEGLCGDI 746
              N  S  +P+   +++ L  + +S N L G IP        L  AL        GDI
Sbjct:   728 KNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDI 784

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)]

 Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
 Identities = 253/685 (36%), Positives = 341/685 (49%)

Query:    26 FPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVN 85
             F  I+     EE   LL++K  L  +D    L SW   N    +PC W GI C H+  V 
Sbjct:    16 FSFILVRSLNEEGRVLLEFKAFL--NDSNGYLASW---NQLDSNPCNWTGIACTHLRTVT 70

Query:    86 SINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSG 145
             S++L  +N + G + P I  +  L+ L++S+N  SG IP  +     L+ L L  N+F G
Sbjct:    71 SVDLNGMN-LSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHG 129

Query:   146 RIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNL 205
              IP Q+  +  ++ L+L +N L G IP ++G LSSL EL + SN L G IPPS+  L  L
Sbjct:   130 VIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQL 189

Query:   206 AILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS 265
              I+    N  SG IPSEI   +SL  L L  N L GS+P  L  L NL  L L  N  S 
Sbjct:   190 RIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSG 249

Query:   266 SIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLKSL 325
              IP  +GN+  L +L L EN   GSIP                    G IP EIGNL   
Sbjct:   250 EIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDA 309

Query:   326 SGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSG 385
             + ++ ++N+L+  IP   G++ NL   +L++N L G IP E+G L  L  LDLS N+L+G
Sbjct:   310 AEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNG 369

Query:   386 SIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHM 445
             +IP  L  L  L  L L  N L G IP  IG   +   L +  N LS  I         +
Sbjct:   370 TIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTL 429

Query:   446 TLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXH-LTC 504
              LL+L  N LSG IP +L     LT L L DNQL GS+P                + L+ 
Sbjct:   430 ILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSG 489

Query:   505 NISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQL 564
             NIS   G    L  + L++NNF G+I  + G    +  F++S N + G +P E+G    +
Sbjct:   490 NISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTI 549

Query:   565 HVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSN 624
               +DLS N   G I  E+G            N+L G++P   G L +L  L L  N LS 
Sbjct:   550 QRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSE 609

Query:   625 SIPRSLGNLVKLHY-LNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRS 683
             +IP  LG L  L   LN+S N     IP  L  L  L  L L+ N L  EIP+ I N+ S
Sbjct:   610 NIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMS 669

Query:   684 LEMLNLSHNNLSDFIP--RCFEEMN 706
             L + N+S+NNL   +P    F+ M+
Sbjct:   670 LLICNISNNNLVGTVPDTAVFQRMD 694

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 993 (354.6 bits), Expect = 4.4e-100, P = 4.4e-100
 Identities = 246/655 (37%), Positives = 340/655 (51%)

Query:    84 VNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQF 143
             + S++L + N + G IP Q+G++  LK L L  N  +GTIP   GNL  L+ L L++ + 
Sbjct:   122 LESLHLFS-NLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRL 180

Query:   144 SGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLT 203
             +G IP + G L  ++ L L  N+L GPIP E+G  +SL   A   N L GS+P  L  L 
Sbjct:   181 TGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLK 240

Query:   204 NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF 263
             NL  L L +NS SG IPS++G+L S+  L L  N+L G IP  L  L NL TL L +N+ 
Sbjct:   241 NLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNL 300

Query:   264 SSSIPSEIGNLKSLSILELGENRLNGSIPLSX-XXXXXXXXXXXXXXXXXGSIPSEIGNL 322
             +  I  E   +  L  L L +NRL+GS+P +                   G IP+EI N 
Sbjct:   301 TGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNC 360

Query:   323 KSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENK 382
             +SL  L+L++N L+  IP  L  L  L   YL  NSL G++ S I NL +L    L  N 
Sbjct:   361 QSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNN 420

Query:   383 LSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNL 442
             L G +P  +G L  L I+YL+ N   G +P EIGN   L E+    N+LS  I  S+G L
Sbjct:   421 LEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRL 480

Query:   443 THMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXH- 501
               +T L L +N L G IP  LGN  ++T++ L+DNQL GSIP                + 
Sbjct:   481 KDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNS 540

Query:   502 LTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS 561
             L  N+ +S      LT I+ S N F G IS   G    L +FDV+ N   G +P E+G S
Sbjct:   541 LQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYL-SFDVTENGFEGDIPLELGKS 599

Query:   562 SQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNR 621
             + L  + L  N   G+IP   G            N L G +P ELG   +L ++DL++N 
Sbjct:   600 TNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNY 659

Query:   622 LSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNM 681
             LS  IP  LG L  L  L LS+N+F+  +P ++  L ++  L L  N L   IP +I N+
Sbjct:   660 LSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNL 719

Query:   682 RSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEAL 736
             ++L  LNL  N LS  +P    +++ L  + +S N L G IP        L  AL
Sbjct:   720 QALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSAL 774

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
 Identities = 251/699 (35%), Positives = 347/699 (49%)

Query:    64 NATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTI 123
             N    +PC W G++C+  G  +S N   V                   LDLSS + SG +
Sbjct:    59 NGIDETPCNWIGVNCSSQGSSSSSNSLVVTS-----------------LDLSSMNLSGIV 101

Query:   124 PPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNE 183
              P IG L  L +L L+ N  +G IP +IG+ S +E + L  NQ  G IP E+  LS L  
Sbjct:   102 SPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRS 161

Query:   184 LALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSI 243
               + +N L G +P  +G+L NL  L  + N+L+G +P  +GNL  L++   G N   G+I
Sbjct:   162 FNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNI 221

Query:   244 PLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXX 303
             P  +G   NL  L L  N  S  +P EIG L  L  + L +N+ +G IP           
Sbjct:   222 PTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLET 281

Query:   304 XXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSI 363
                      G IPSEIGN+KSL  L L  N+L+ +IP  LG L+ +      +N LSG I
Sbjct:   282 LALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEI 341

Query:   364 PSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFE 423
             P E+  +  L  L L +NKL+G IP+ L  L NLA L L  N+L G IP    NL S+ +
Sbjct:   342 PVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQ 401

Query:   424 LQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSI 483
             LQL  N LS  I   LG  + + ++   +N LSG IP  +     L +L L  N++ G+I
Sbjct:   402 LQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNI 461

Query:   484 PXXXXXXXXXXXXXXXXH-LTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGT 542
             P                + LT            L+ I+L  N F G +  + G C  L  
Sbjct:   462 PPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQR 521

Query:   543 FDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQL 602
               ++ N    +LP EI   S L   ++S+N + G IPSEI             N   G L
Sbjct:   522 LHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSL 581

Query:   603 PSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLS- 661
             P ELGSL QLE L LS NR S +IP ++GNL  L  L +  N F   IP +L  L  L  
Sbjct:   582 PPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQI 641

Query:   662 ELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGP 721
              ++LS+N    EIP +I N+  L  L+L++N+LS  IP  FE ++ LL  + SYN L G 
Sbjct:   642 AMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQ 701

Query:   722 IPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKP 760
             +P++  F +  + +  GN+GLCG     +SC  S S  P
Sbjct:   702 LPHTQIFQNMTLTSFLGNKGLCGG--HLRSCDPSHSSWP 738

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.1__3648__AT1G35710.1 annotation not avaliable (1123 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	869
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-118
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-13
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-13
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-12
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-07
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	7e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-05
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  381 bits (979), Expect = e-118
 Identities = 283/794 (35%), Positives = 381/794 (47%), Gaps = 148/794 (18%)

Query: 9   SLVIFSLFFLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKI 68
             +IF LFFL     L+F ++      EE+  LL +K+S+   D    L +W  +     
Sbjct: 10  PYLIFMLFFL----FLNFSML----HAEELELLLSFKSSIN--DPLKYLSNWNSSADV-- 57

Query: 69  SPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIG 128
             C W GI CN+  RV SI+L+  N                                   
Sbjct: 58  --CLWQGITCNNSSRVVSIDLSGKN----------------------------------- 80

Query: 129 NLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLS-SLNELALT 187
                          SG+I   I  L YI+ ++L  NQLSGPIP ++   S SL  L L+
Sbjct: 81  --------------ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 188 SNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFL 247
           +N   GSIP   G++ NL  L L NN LSG IP++IG+  SL  L LG N L G IP  L
Sbjct: 127 NNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184

Query: 248 GNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLY 307
            NLT                        SL  L L  N+L G IP  LG + +L  +YL 
Sbjct: 185 TNLT------------------------SLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220

Query: 308 TNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI 367
            N+LSG IP EIG L SL+ L+L  N L+  IP  LGNL NL   +LY+N LSG IP  I
Sbjct: 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280

Query: 368 GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLG 427
            +L+ L +LDLS+N LSG IP  +  L NL IL+L SN   G IP  + +L  L  LQL 
Sbjct: 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340

Query: 428 DNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NL 486
            NK S  I  +LG   ++T+L L  N L+G IPE L +   L  L L  N L+G IP +L
Sbjct: 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400

Query: 487 RNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVS 546
               +L R+RL  N  +  +   F   P + F+D+S+NN  G+I+S     P+L    ++
Sbjct: 401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460

Query: 547 VNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL 606
            N   G LP   G S +L  +DLS N   G +P ++G LS L++L L  N+L G++P EL
Sbjct: 461 RNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL 519

Query: 607 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLS 666
            S  +L  LDLS N+LS  IP S                   E+P+       LS+LDLS
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIPASFS-----------------EMPV-------LSQLDLS 555

Query: 667 HNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNST 726
            N L  EIP  + N+ SL  +N+SHN+L                        HG +P++ 
Sbjct: 556 QNQLSGEIPKNLGNVESLVQVNISHNHL------------------------HGSLPSTG 591

Query: 727 AFSDALMEALQGNEGLCGDIK--GFQSCKASKSHKPASRKIWVVIVFPLLGTVALLISLI 784
           AF      A+ GN  LCG     G   CK     +      W   +   LG   L+++L+
Sbjct: 592 AFLAINASAVAGNIDLCGGDTTSGLPPCK-----RVRKTPSWWFYITCTLG-AFLVLALV 645

Query: 785 ALFFIFRRRKNALQ 798
           A  F+F R +N L+
Sbjct: 646 AFGFVFIRGRNNLE 659

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 81.4 bits (201), Expect = 7e-16
 Identities = 41/89 (46%), Positives = 56/89 (62%)

Query: 208 LYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSI 267
           L L N  L G IP++I  L+ L S+ L  N + G+IP  LG++T+L+ L L  NSF+ SI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 268 PSEIGNLKSLSILELGENRLNGSIPLSLG 296
           P  +G L SL IL L  N L+G +P +LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 79.5 bits (196), Expect = 3e-15
 Identities = 53/158 (33%), Positives = 76/158 (48%), Gaps = 21/158 (13%)

Query: 31  YSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCA-----WFGIHC---NHVG 82
                EEV AL   K+SL        LP     N     PC      W G  C   +  G
Sbjct: 367 SKTLLEEVSALQTLKSSLG-------LPLRFGWNG---DPCVPQQHPWSGADCQFDSTKG 416

Query: 83  R--VNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSA 140
           +  ++ + L N   + G IP  I  +  L+ ++LS NS  G IPP +G+++ L+ L LS 
Sbjct: 417 KWFIDGLGLDN-QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY 475

Query: 141 NQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGL 178
           N F+G IP  +G L+ +  L+L  N LSG +P  +GG 
Sbjct: 476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 79.1 bits (195), Expect = 4e-15
 Identities = 40/93 (43%), Positives = 57/93 (61%)

Query: 156 YIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSL 215
           +I+ L L    L G IP+++  L  L  + L+ N ++G+IPPSLG++T+L +L L  NS 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 216 SGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLG 248
           +GSIP  +G L SL  L L  N L G +P  LG
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 78.7 bits (194), Expect = 6e-15
 Identities = 40/92 (43%), Positives = 55/92 (59%)

Query: 229 LSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN 288
           +  L L N  L G IP  +  L +L ++ L  NS   +IP  +G++ SL +L+L  N  N
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 289 GSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIG 320
           GSIP SLG LT+L  L L  NSLSG +P+ +G
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.9 bits (192), Expect = 1e-14
 Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 1/97 (1%)

Query: 359 LSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNL 418
           L G IP++I  L+ L +++LS N + G+IP SLG++T+L +L L  N+  GSIP  +G L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 419 KSLFELQLGDNKLSNSISHSLGN-LTHMTLLALYDNA 454
            SL  L L  N LS  +  +LG  L H       DNA
Sbjct: 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.5 bits (191), Expect = 1e-14
 Identities = 58/192 (30%), Positives = 82/192 (42%), Gaps = 30/192 (15%)

Query: 615 LDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI 674
           L L +  L   IP  +  L  L  +NLS N     IP  L  +  L  LDLS+N     I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 675 PSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALME 734
           P  +  + SL +LNL+ N+LS  +P     + G L        LH    N   F+D    
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP---AALGGRL--------LHRASFN---FTD---- 524

Query: 735 ALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVVIVFPLLGTVALLISLIALFFIFRRRK 794
               N GLCG I G ++C     H     KI +        +VA L  +I     ++RR+
Sbjct: 525 ----NAGLCG-IPGLRAC---GPHLSVGAKIGIA----FGVSVAFLFLVICAMCWWKRRQ 572

Query: 795 NALQTLQSSPRG 806
           N L+  + + R 
Sbjct: 573 NILRAQRIAARE 584

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.5 bits (191), Expect = 1e-14
 Identities = 40/92 (43%), Positives = 57/92 (61%)

Query: 325 LSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLS 384
           + GL L +  L   IP+ +  L +L +  L  NS+ G+IP  +G++ SL  LDLS N  +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 385 GSIPHSLGNLTNLAILYLHSNTLLGSIPREIG 416
           GSIP SLG LT+L IL L+ N+L G +P  +G
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.8 bits (189), Expect = 3e-14
 Identities = 39/92 (42%), Positives = 53/92 (57%)

Query: 253 LDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLS 312
           +D L L N      IP++I  L+ L  + L  N + G+IP SLG++T+L+ L L  NS +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 313 GSIPSEIGNLKSLSGLELADNELSSSIPHYLG 344
           GSIP  +G L SL  L L  N LS  +P  LG
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.9 bits (184), Expect = 1e-13
 Identities = 44/102 (43%), Positives = 60/102 (58%), Gaps = 3/102 (2%)

Query: 145 GRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTN 204
           G IP  I  L ++++++L  N + G IP  +G ++SL  L L+ N   GSIP SLG LT+
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 205 LAILYLHNNSLSGSIPSEIGN--LKSLSSLALGNNKLCGSIP 244
           L IL L+ NSLSG +P+ +G   L   S     N  LCG IP
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG-IP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.1 bits (182), Expect = 1e-13
 Identities = 44/113 (38%), Positives = 62/113 (54%), Gaps = 1/113 (0%)

Query: 301 LDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLS 360
           +D L L    L G IP++I  L+ L  + L+ N +  +IP  LG++T+L    L  NS +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 361 GSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGN-LTNLAILYLHSNTLLGSIP 412
           GSIP  +G L SL  L+L+ N LSG +P +LG  L + A      N  L  IP
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 73.1 bits (179), Expect = 2e-13
 Identities = 107/336 (31%), Positives = 158/336 (47%), Gaps = 12/336 (3%)

Query: 386 SIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHM 445
           S   S      L+    H+     ++     NL+S+   +L  N  SN++     +L+ +
Sbjct: 10  SALSSNTLREVLSSNTYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRL 69

Query: 446 TLLALYDNAL--SGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLT 503
             L L   +   S    E L NL+ L  L L+ N+L+ +I  L  LTNL  L L+ N++T
Sbjct: 70  LSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNIT 129

Query: 504 CNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQ 563
                   +   L  +DLS N     + S     PNL   D+S N++   LP  + + S 
Sbjct: 130 DIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSN 187

Query: 564 LHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLS 623
           L+ +DLS N I   +P EI  LS+L +L L  N +  +L S L +L  L  L+LS+N+L 
Sbjct: 188 LNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE 245

Query: 624 NSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRS 683
           + +P S+GNL  L  L+LS NQ I  I   L  L +L ELDLS N L   +P     +  
Sbjct: 246 D-LPESIGNLSNLETLDLSNNQ-ISSIS-SLGSLTNLRELDLSGNSLSNALPLIALLLLL 302

Query: 684 LEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719
           LE+L    N L        +  + LL  +I  N   
Sbjct: 303 LELLL---NLLLTLKALELKLNSILLNNNILSNGET 335

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 72.3 bits (177), Expect = 3e-13
 Identities = 101/302 (33%), Positives = 138/302 (45%), Gaps = 14/302 (4%)

Query: 99  IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSY-I 157
               + N+  L  LDL+ N     I   +  L+ L  L L  N  +  IPP IG L   +
Sbjct: 85  GSENLLNLLPLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNL 142

Query: 158 EALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSG 217
           + L L  N++   +P  +  L +L  L L+ N L   +P  L NL+NL  L L  N +S 
Sbjct: 143 KELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS- 199

Query: 218 SIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSL 277
            +P EI  L +L  L L NN +   +   L NL NL  L L NN     +P  IGNL +L
Sbjct: 200 DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNL 257

Query: 278 SILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS 337
             L+L  N++  S   SLG+LTNL  L L  NSLS ++P     L     LEL  N L +
Sbjct: 258 ETLDLSNNQI--SSISSLGSLTNLRELDLSGNSLSNALPLIALLLLL---LELLLNLLLT 312

Query: 338 SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNL 397
                L   + L    +  N    S P  +  L+SL+NL   +N L  S  +        
Sbjct: 313 LKALELKLNSILLNNNILSNGE-TSSPEALSILESLNNLWTLDNALDESNLNRYIVKNPN 371

Query: 398 AI 399
           AI
Sbjct: 372 AI 373

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.0 bits (174), Expect = 1e-12
 Identities = 34/91 (37%), Positives = 53/91 (58%)

Query: 519 IDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKI 578
           + L +    G I +D  K  +L + ++S N+I G++PP +G  + L V+DLS N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 579 PSEIGKLSSLIKLILRRNQLFGQLPSELGSL 609
           P  +G+L+SL  L L  N L G++P+ LG  
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.1 bits (169), Expect = 5e-12
 Identities = 36/89 (40%), Positives = 50/89 (56%)

Query: 184 LALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSI 243
           L L +  L+G IP  +  L +L  + L  NS+ G+IP  +G++ SL  L L  N   GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 244 PLFLGNLTNLDTLYLRNNSFSSSIPSEIG 272
           P  LG LT+L  L L  NS S  +P+ +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 68.1 bits (166), Expect = 7e-12
 Identities = 90/243 (37%), Positives = 131/243 (53%), Gaps = 8/243 (3%)

Query: 261 NSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIG 320
           ++    +PS +  L SL +L       +     +L NL  L +L L  N L  +I SE+ 
Sbjct: 56  SNTLLLLPSSLSRLLSLDLLSPSGIS-SLDGSENLLNLLPLPSLDLNLNRLRSNI-SELL 113

Query: 321 NLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSE 380
            L +L+ L+L +N ++   P      +NL    L  N +  S+PS + NL +L NLDLS 
Sbjct: 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172

Query: 381 NKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLG 440
           N LS  +P  L NL+NL  L L  N +   +P EI  L +L EL L +N +   +S SL 
Sbjct: 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLS-SLS 229

Query: 441 NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRN 500
           NL +++ L L +N L   +PE +GNL  L  L LS+NQ+  SI +L +LTNL  L L+ N
Sbjct: 230 NLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGN 287

Query: 501 HLT 503
            L+
Sbjct: 288 SLS 290

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 3e-11
 Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 576 GKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVK 635
           G IP++I KL  L  + L  N + G +P  LGS+  LE LDLS N  + SIP SLG L  
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 636 LHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHN 668
           L  LNL+ N     +P  L  +L+H +  + + N
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.8 bits (158), Expect = 1e-10
 Identities = 33/85 (38%), Positives = 48/85 (56%)

Query: 400 LYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVI 459
           L L +  L G IP +I  L+ L  + L  N +  +I  SLG++T + +L L  N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 460 PEELGNLVKLTMLTLSDNQLQGSIP 484
           PE LG L  L +L L+ N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 1e-09
 Identities = 32/80 (40%), Positives = 43/80 (53%)

Query: 552 GSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQ 611
           G +P +I     L  I+LS N I G IP  +G ++SL  L L  N   G +P  LG L  
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 612 LEYLDLSSNRLSNSIPRSLG 631
           L  L+L+ N LS  +P +LG
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 62/271 (22%), Positives = 95/271 (35%), Gaps = 59/271 (21%)

Query: 457 GVIPEELGNLVKLTMLTLSDNQLQ----GSIPNLRNLTNLIRLRLNRN--------HLTC 504
             + + L     L  L LSDN L     G + +L   ++L  L+LN N         L  
Sbjct: 71  QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130

Query: 505 NISESFGIHPKLTFIDLSHNNFYGQISSDWGK----CPNLGTFDVSVNNI----IGSLPP 556
            + +     P L  + L  N   G       K      +L   +++ N I    I +L  
Sbjct: 131 GLKDL---PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187

Query: 557 EIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLD 616
            +  +  L V+DL+ N +          L+  +                  SL  LE L+
Sbjct: 188 GLKANCNLEVLDLNNNGL---TDEGASALAETLA-----------------SLKSLEVLN 227

Query: 617 LSSNRLSNSI-----PRSLGNLVKLHYLNLSTNQFIQEIPIKL-----EKLIHLSELDLS 666
           L  N L+++         L   + L  L+LS N    +    L     EK   L ELDL 
Sbjct: 228 LGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL-ELDLR 286

Query: 667 HNFLGKEI-----PSQICNMRSLEMLNLSHN 692
            N  G+E       S +     LE L +  +
Sbjct: 287 GNKFGEEGAQLLAESLLEPGNELESLWVKDD 317

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 36 EEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCN 79
          ++  ALL +K+SL N D    L SW  ++     PC+W G+ C+
Sbjct: 3  DDRDALLAFKSSL-NGDPSGALSSWNPSS---SDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 7e-06
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 659 HLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
           +L  LDLS+N L          + +L++L+LS NNL+   P  F  +  L  +D+S N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 1e-05
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 476 DNQ-LQGSIPN-LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSD 533
           DNQ L+G IPN +  L +L  + L+ N +  NI  S G    L  +DLS+N+F G I   
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 534 WGKCPNLGTFDVSVNNIIGSLPPEIG 559
            G+  +L   +++ N++ G +P  +G
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 8e-05
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%)

Query: 448 LALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNI 506
           L L +  L G IP ++  L  L  + LS N ++G+IP +L ++T+L  L L+ N    +I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 507 SESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGT-FDVSVN 548
            ES G    L  ++L+ N+  G++ +  G        F+ + N
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 44.5 bits (105), Expect = 3e-04
 Identities = 80/277 (28%), Positives = 115/277 (41%), Gaps = 24/277 (8%)

Query: 226 LKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285
           L  L ++ L  +K    IP  L   TNL+TL L + S    +PS I  L  L  L++   
Sbjct: 633 LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691

Query: 286 RLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGN 345
                +P  + NL +L  L L   S   S P    N+  L   E A  E  S++   L N
Sbjct: 692 ENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLR--LEN 748

Query: 346 LTNLAAFYLYKNSLSGSIPSEIGNLK----SLSNLDLSENKLSGSIPHSLGNLTNLAILY 401
           L  L    +    L   +      +     SL+ L LS+      +P S+ NL  L  L 
Sbjct: 749 LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808

Query: 402 LHSNTLLGSIPREIGNLKSLFELQL-GDNKLSN--SISHSLGNLTHMTLLALYDNALSGV 458
           + +   L ++P  I NL+SL  L L G ++L     IS      T+++ L L    +  V
Sbjct: 809 IENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS------TNISDLNLSRTGIEEV 861

Query: 459 IP---EELGNLVKLTMLTLSDNQLQGSIPNLRNLTNL 492
            P   E+  NL  L M     N LQ    N+  L +L
Sbjct: 862 -PWWIEKFSNLSFLDMNGC--NNLQRVSLNISKLKHL 895

syringae 6; Provisional. Length = 1153

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 17/124 (13%)

Query: 612 LEYLDLSSNRLSNSIPRSLGNLV----KLHYLNLSTNQF----IQEIPIKLEKLIHLSEL 663
           LE L L  NRL  +   +L   +     L  LNL+ N      I+ +   L+   +L  L
Sbjct: 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVL 198

Query: 664 DLSHNFLGKEIPSQIC----NMRSLEMLNLSHNNLSDFIPRCF-----EEMNGLLYIDIS 714
           DL++N L  E  S +     +++SLE+LNL  NNL+D                LL + +S
Sbjct: 199 DLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258

Query: 715 YNEL 718
            N++
Sbjct: 259 CNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 420 SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQL 479
           +L  L L +N+L+     +   L ++ +L L  N L+ + PE    L  L  L LS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 611 QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK-LEKLIHLSELDLSHN 668
            L+ LDLS+NRL+     +   L  L  L+LS N  +  I  +    L  L  LDLS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNN-LTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 45/178 (25%), Positives = 69/178 (38%), Gaps = 21/178 (11%)

Query: 277 LSILELGENRLN-GSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLE---LAD 332
           LS+ E G       S+   L     L  L L  N+L       + +L   S L+   L +
Sbjct: 58  LSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNN 117

Query: 333 NELSSSI-PHYLGNLT----NLAAFYLYKNSLSG----SIPSEIGNLKSLSNLDLSENKL 383
           N L           L      L    L +N L G    ++   +   + L  L+L+ N +
Sbjct: 118 NGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177

Query: 384 SG----SIPHSLGNLTNLAILYLHSNTL--LGSIPREIG--NLKSLFELQLGDNKLSN 433
                 ++   L    NL +L L++N L   G+        +LKSL  L LGDN L++
Sbjct: 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 22/60 (36%), Positives = 28/60 (46%)

Query: 372 SLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKL 431
           +L +LDLS N+L+     +   L NL +L L  N L    P     L SL  L L  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 20/60 (33%), Positives = 27/60 (45%)

Query: 587 SLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQF 646
           +L  L L  N+L          L  L+ LDLS N L++  P +   L  L  L+LS N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	869
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
PLN03150	623	hypothetical protein; Provisional	99.57
PLN03150	623	hypothetical protein; Provisional	99.55
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.13
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.09
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.04
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.99
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.99
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.97
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.95
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.94
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.93
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.92
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.91
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.84
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.79
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.77
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.75
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.74
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.69
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.58
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.43
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.25
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.14
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.09
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.03
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.94
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.86
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.82
PRK15386	426	type III secretion protein GogB; Provisional	97.72
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.7
PRK15386	426	type III secretion protein GogB; Provisional	97.68
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.68
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.52
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.38
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.38
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.3
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.17
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.14
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.06
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.83
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.74
KOG4341	483	consensus F-box protein containing LRR [General fu	96.71
KOG4341	483	consensus F-box protein containing LRR [General fu	96.66
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.08
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.01
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.48
KOG4308	478	consensus LRR-containing protein [Function unknown	95.11
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.94
KOG4308	478	consensus LRR-containing protein [Function unknown	94.7
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.37
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.18
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	91.78
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.34
smart00370	26	LRR Leucine-rich repeats, outliers.	89.6
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.6
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.61
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	86.03
KOG1187	361	consensus Serine/threonine protein kinase [Signal	82.71
smart00370	26	LRR Leucine-rich repeats, outliers.	82.28
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	82.28
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	80.16

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.6e-78  Score=745.70  Aligned_cols=591  Identities=41%  Similarity=0.636  Sum_probs=436.8

Q ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEe
Q 002896           34 STEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLD  113 (869)
Q Consensus        34 ~~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~  113 (869)
                      .++|++||++||+++.+ | .+.+.+|+    ...+||.|.||+|+..++|+.++|++.+ +.|.+++.+..+++|++|+
T Consensus        27 ~~~~~~~l~~~~~~~~~-~-~~~~~~w~----~~~~~c~w~gv~c~~~~~v~~L~L~~~~-i~~~~~~~~~~l~~L~~L~   99 (968)
T PLN00113         27 HAEELELLLSFKSSIND-P-LKYLSNWN----SSADVCLWQGITCNNSSRVVSIDLSGKN-ISGKISSAIFRLPYIQTIN   99 (968)
T ss_pred             CHHHHHHHHHHHHhCCC-C-cccCCCCC----CCCCCCcCcceecCCCCcEEEEEecCCC-ccccCChHHhCCCCCCEEE
Confidence            56899999999999964 5 56789997    5678999999999988899999999988 9999999999999999999


Q ss_pred             CCCCCCCCCCCCCCC-CCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccC
Q 002896          114 LSSNSFSGTIPPQIG-NLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLK  192 (869)
Q Consensus       114 Ls~n~~~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  192 (869)
                      |++|.++|.+|..+. .+++|++|+|++|.+++.+|.  +.+++|++|++++|.+++.+|..++++++|++|++++|.+.
T Consensus       100 Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~  177 (968)
T PLN00113        100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV  177 (968)
T ss_pred             CCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence            999999998887755 899999999999999988885  56888999999999998888888888888999988888888


Q ss_pred             CCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCC
Q 002896          193 GSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIG  272 (869)
Q Consensus       193 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~  272 (869)
                      +.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..++
T Consensus       178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  257 (968)
T PLN00113        178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG  257 (968)
T ss_pred             ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence            88888888888888888888888888888888888888888888888777777777777777777777777777777777


Q ss_pred             CCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCcccccee
Q 002896          273 NLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAF  352 (869)
Q Consensus       273 ~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  352 (869)
                      ++++|++|++++|++.+.+|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+..|..+..+++|+.|
T Consensus       258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  337 (968)
T PLN00113        258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL  337 (968)
T ss_pred             CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence            77777777777777766666666666666666666666666666666666666666666666665555555555555555


Q ss_pred             eccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCc
Q 002896          353 YLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLS  432 (869)
Q Consensus       353 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  432 (869)
                      ++++|.+.+.+|..++.+++|+.|++++|                        .+.+.+|..+..+++|+.|++++|.+.
T Consensus       338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n------------------------~l~~~~p~~~~~~~~L~~L~l~~n~l~  393 (968)
T PLN00113        338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTN------------------------NLTGEIPEGLCSSGNLFKLILFSNSLE  393 (968)
T ss_pred             ECcCCCCcCcCChHHhCCCCCcEEECCCC------------------------eeEeeCChhHhCcCCCCEEECcCCEec
Confidence            55555555555554444455555555544                        444444545555555555555555555


Q ss_pred             ccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccC
Q 002896          433 NSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGI  512 (869)
Q Consensus       433 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  512 (869)
                      +.+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+                                 
T Consensus       394 ~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l---------------------------------  440 (968)
T PLN00113        394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL---------------------------------  440 (968)
T ss_pred             ccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcc---------------------------------
Confidence            55555555666666666666665555444333333222222222222                                 


Q ss_pred             CCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceee
Q 002896          513 HPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLI  592 (869)
Q Consensus       513 ~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  592 (869)
                                    ++.++                        ..+..+++|+.|++++|++.+.+|..+          
T Consensus       441 --------------~~~~~------------------------~~~~~l~~L~~L~L~~n~~~~~~p~~~----------  472 (968)
T PLN00113        441 --------------QGRIN------------------------SRKWDMPSLQMLSLARNKFFGGLPDSF----------  472 (968)
T ss_pred             --------------cCccC------------------------hhhccCCCCcEEECcCceeeeecCccc----------
Confidence                          22111                        112222333333444444333333221          


Q ss_pred             ccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCC
Q 002896          593 LRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGK  672 (869)
Q Consensus       593 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  672 (869)
                                     ..++|+.|++++|++++..|..+.++++|+.|+|++|++.+.+|..+.++++|++|+|++|.+++
T Consensus       473 ---------------~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  537 (968)
T PLN00113        473 ---------------GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG  537 (968)
T ss_pred             ---------------ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccc
Confidence                           12355666666666666677777777888888888888888888888888999999999999999


Q ss_pred             chhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCccccccchhhhcCCCCCCCCCC--CCC
Q 002896          673 EIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIK--GFQ  750 (869)
Q Consensus       673 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~~~--~~~  750 (869)
                      .+|..+..+++|+.|||++|++++.+|..+..+++|+++++++|++.|.+|..++|..+...++.||+.+||..+  ...
T Consensus       538 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~  617 (968)
T PLN00113        538 QIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLP  617 (968)
T ss_pred             cCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998632  234


Q ss_pred             CCC
Q 002896          751 SCK  753 (869)
Q Consensus       751 ~C~  753 (869)
                      +|.
T Consensus       618 ~c~  620 (968)
T PLN00113        618 PCK  620 (968)
T ss_pred             CCc
Confidence            564

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.6e-59  Score=576.12  Aligned_cols=497  Identities=39%  Similarity=0.579  Sum_probs=392.0

Q ss_pred             cccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccC-CCCCCCEEEccCCCCCCCCCCCCCCCccCCccc
Q 002896          203 TNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLG-NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILE  281 (869)
Q Consensus       203 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  281 (869)
                      .+++.|++++|.+++.++..+..+++|++|++++|.+++.+|..+. .+++|++|++++|++++.+|.  +.+++|++|+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~  146 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD  146 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence            4677888888888888887788888888888888888777776654 778888888888888777664  4467777777


Q ss_pred             cCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCC
Q 002896          282 LGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG  361 (869)
Q Consensus       282 L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  361 (869)
                      +++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|+.|++++|.+.+
T Consensus       147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  226 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG  226 (968)
T ss_pred             CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence            77777777777777777777777777777777777777777777777777777776667667777777777777777766


Q ss_pred             CCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccC
Q 002896          362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN  441 (869)
Q Consensus       362 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~  441 (869)
                      .+|..++.+++|++|++++|.+++..|..++++++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..
T Consensus       227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  306 (968)
T PLN00113        227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ  306 (968)
T ss_pred             cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC
Confidence            66666666667777777666666666666666666666666666666666666666666666666666665555555555


Q ss_pred             CCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeC
Q 002896          442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDL  521 (869)
Q Consensus       442 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  521 (869)
                      +++|+.|++++|.+.+..|..                       +..+++|+.|++++|.+.+..|..+..+++|+.|++
T Consensus       307 l~~L~~L~l~~n~~~~~~~~~-----------------------~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L  363 (968)
T PLN00113        307 LQNLEILHLFSNNFTGKIPVA-----------------------LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL  363 (968)
T ss_pred             CCCCcEEECCCCccCCcCChh-----------------------HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEEC
Confidence            555555555555555555544                       444555555556666666666666777777888888


Q ss_pred             CCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCcccccc
Q 002896          522 SHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQ  601 (869)
Q Consensus       522 s~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  601 (869)
                      ++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+.+.
T Consensus       364 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  443 (968)
T PLN00113        364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR  443 (968)
T ss_pred             CCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc
Confidence            88888877787777788888888888888888888888888999999999999888888888999999999999999998


Q ss_pred             CcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCC
Q 002896          602 LPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNM  681 (869)
Q Consensus       602 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  681 (869)
                      +|..+..+++|+.|++++|++.+.+|..+ ..++|+.||+++|++.+.+|..+.++++|+.|+|++|.+.+.+|+.+..+
T Consensus       444 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  522 (968)
T PLN00113        444 INSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC  522 (968)
T ss_pred             cChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc
Confidence            88888899999999999999999888766 45899999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCC
Q 002896          682 RSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS  725 (869)
Q Consensus       682 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~  725 (869)
                      ++|++|+|++|.+++.+|..|..+++|+.||+++|+++|.+|..
T Consensus       523 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  566 (968)
T PLN00113        523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN  566 (968)
T ss_pred             cCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence            99999999999999999999999999999999999999999964

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=8.9e-39  Score=333.04  Aligned_cols=375  Identities=23%  Similarity=0.229  Sum_probs=275.9

Q ss_pred             ceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCC
Q 002896          350 AAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDN  429 (869)
Q Consensus       350 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  429 (869)
                      +.|++++|.+...-+..|.++++|+++.+..|.++ .+|...+...+|+.|+|.+|.+...-.+.++.++.|+.|||+.|
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN  159 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN  159 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence            34555555555555555555555555555555555 34443334444666666666665555555666666666666666


Q ss_pred             cCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCC-CcCCCCCCCEEECcCCcCccccCc
Q 002896          430 KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISE  508 (869)
Q Consensus       430 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~  508 (869)
                      .++......|..-.++++|+|++|.++....+.|.++.+|..|.|+.|+++...+ .|.+++.|+.|++..|.+...-.-
T Consensus       160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l  239 (873)
T KOG4194|consen  160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL  239 (873)
T ss_pred             hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence            6665555555555666666666666666666666666666666666666665444 556666666666666666655555


Q ss_pred             cccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCccc
Q 002896          509 SFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSL  588 (869)
Q Consensus       509 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  588 (869)
                      .|.++++|+.|.+..|.++..-...|-.|.++++|+|+.|++...-..++.+++.|+.|++|+|.|...-++....+++|
T Consensus       240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL  319 (873)
T KOG4194|consen  240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL  319 (873)
T ss_pred             hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence            67777777777777777766666667777777777777777776666777888888888888888887777778888888


Q ss_pred             ceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccch---hhhcccccccccc
Q 002896          589 IKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPI---KLEKLIHLSELDL  665 (869)
Q Consensus       589 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~L  665 (869)
                      ++|+|++|.++...+..|..++.|++|+|++|.+...-..+|..+++|++|||++|.++..|.+   .|.++++|+.|+|
T Consensus       320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l  399 (873)
T KOG4194|consen  320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL  399 (873)
T ss_pred             eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence            8888888888888888888899999999999999887778889999999999999998876643   4788999999999


Q ss_pred             cccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCc
Q 002896          666 SHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNST  726 (869)
Q Consensus       666 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~  726 (869)
                      .+|++..+...+|.++++||.|||.+|.|..+-|+.|..+ .|+.|-+..-.|-|.|.-.|
T Consensus       400 ~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~W  459 (873)
T KOG4194|consen  400 TGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKW  459 (873)
T ss_pred             cCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHH
Confidence            9999977777899999999999999999999999999998 89999999888888887544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.7e-40  Score=330.16  Aligned_cols=476  Identities=32%  Similarity=0.474  Sum_probs=292.4

Q ss_pred             ccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccC
Q 002896          204 NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELG  283 (869)
Q Consensus       204 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  283 (869)
                      .|+.+.+++|.+... -..+.++..|.+|++.+|++. ..|.+++.+..++.++.++|+++ .+|..+..+.+|+.++++
T Consensus        46 ~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             chhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence            455555666655522 223455555555555555554 44445555555555555555554 445555555555555555


Q ss_pred             cccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCC
Q 002896          284 ENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSI  363 (869)
Q Consensus       284 ~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  363 (869)
                      +|.+. ..|+.++.+..|+.++..+|+++ ..|+.+.++.+|..+++.+|++....|..+.                   
T Consensus       123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-------------------  181 (565)
T KOG0472|consen  123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-------------------  181 (565)
T ss_pred             cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-------------------
Confidence            55554 34444555555555555555554 3444444555555555555554433333322                   


Q ss_pred             ccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCC
Q 002896          364 PSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLT  443 (869)
Q Consensus       364 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  443 (869)
                            ++.|++||...|.+. .+|..++.+.+|+.|++..|++. .+| .|.+|..|++++++.|++.-.......+++
T Consensus       182 ------m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~  252 (565)
T KOG0472|consen  182 ------MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLN  252 (565)
T ss_pred             ------HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccc
Confidence                  444444444444443 44445555555555555555554 333 455555555555555555443333334555


Q ss_pred             CCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCC--CCCEEe-
Q 002896          444 HMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHP--KLTFID-  520 (869)
Q Consensus       444 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~-  520 (869)
                      ++..||+.+|+++ ..|+.+.-+.+|++||+++|.+++..+.++++ .|+.|-+.+|++..+-.+.+..-+  -|++|. 
T Consensus       253 ~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs  330 (565)
T KOG0472|consen  253 SLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS  330 (565)
T ss_pred             cceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence            5555555555554 34555555556666666666666555566666 666666666655322111110000  001000 


Q ss_pred             ------CCCC---cc-ccc-CC---cCcCCCCCCcEEEccCCCCCCCCCcCcCCC---CCCCEEEccCCcccccCCcccc
Q 002896          521 ------LSHN---NF-YGQ-IS---SDWGKCPNLGTFDVSVNNIIGSLPPEIGDS---SQLHVIDLSANHIIGKIPSEIG  583 (869)
Q Consensus       521 ------ls~n---~l-~~~-~~---~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l---~~L~~L~Ls~n~l~~~~p~~l~  583 (869)
                            ++..   .- .+. .+   .......+.+.|++++-+++ .+|......   .-....+++.|++. .+|..+.
T Consensus       331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~  408 (565)
T KOG0472|consen  331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLV  408 (565)
T ss_pred             hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhH
Confidence                  0000   00 000 01   11223456677777777776 455443322   23778999999987 6788888


Q ss_pred             cCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccc
Q 002896          584 KLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSEL  663 (869)
Q Consensus       584 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  663 (869)
                      .++.+.+.-+.+|+..+-+|..++.+++|..|+|++|.+. .+|..++.+..|+.||+|.|++ ..+|..+..+..|+.+
T Consensus       409 ~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtl  486 (565)
T KOG0472|consen  409 ELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLETL  486 (565)
T ss_pred             HHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHHH
Confidence            8888877666666666788888999999999999999887 6788999999999999999987 6788888888889988


Q ss_pred             cccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCccc
Q 002896          664 DLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH  719 (869)
Q Consensus       664 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  719 (869)
                      -.++|++....|+.+.+|.+|..|||.+|.+.. +|..++++++|++|++++|||.
T Consensus       487 las~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  487 LASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HhccccccccChHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCCccC
Confidence            888999988888889999999999999999987 6788999999999999999998

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=7.5e-38  Score=326.18  Aligned_cols=395  Identities=25%  Similarity=0.292  Sum_probs=294.7

Q ss_pred             CCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCc
Q 002896           70 PCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPP  149 (869)
Q Consensus        70 ~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~  149 (869)
                      +|.-.-..|+. .++.+++-+.   +.|.+|+      .-+.||+++|.++..-+..|.++++|+.+++.+|.++ .||.
T Consensus        51 ~c~~~lldcs~-~~lea~~~~~---l~g~lp~------~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~  119 (873)
T KOG4194|consen   51 PCNTRLLDCSD-RELEAIDKSR---LKGFLPS------QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR  119 (873)
T ss_pred             CCCceeeecCc-cccccccccc---cCCcCcc------ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc
Confidence            35444455642 3344443322   5666664      4577999999998877888899999999999999887 7887


Q ss_pred             ccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCC
Q 002896          150 QIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSL  229 (869)
Q Consensus       150 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  229 (869)
                      ..+-..+|+.|+|.+|.++..-.+.+..++.|+.|||+.|.|+.....+|..-.++++|+|++|.|+......|..+.+|
T Consensus       120 f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL  199 (873)
T KOG4194|consen  120 FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSL  199 (873)
T ss_pred             ccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchh
Confidence            77777789999999998887666778888888888888888887766777777788888888888887777778888888


Q ss_pred             CEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccc
Q 002896          230 SSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTN  309 (869)
Q Consensus       230 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n  309 (869)
                      ..|.|+.|+++...+..|.++++|+.|+|..|++.-.---.|..+++|+.|.+..|.+...-...|..+.++++|+|..|
T Consensus       200 ~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N  279 (873)
T KOG4194|consen  200 LTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN  279 (873)
T ss_pred             eeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc
Confidence            88888888888666677777888888888888776433445777788888888888877666667777778888888888


Q ss_pred             cccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCC
Q 002896          310 SLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPH  389 (869)
Q Consensus       310 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  389 (869)
                      +++..-..|+.+++.|+.|++++|.+...-++.+...++|++|+|++|+++...+..|..+..|++|.|+.|.++.....
T Consensus       280 ~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~  359 (873)
T KOG4194|consen  280 RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEG  359 (873)
T ss_pred             hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhh
Confidence            77766667777777777777777777777777777777777777777777776667777777777777777777766666


Q ss_pred             CCCCCCcccEEEccCCccccccC---hhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCC
Q 002896          390 SLGNLTNLAILYLHSNTLLGSIP---REIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNL  466 (869)
Q Consensus       390 ~l~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l  466 (869)
                      +|..+++|+.|+|++|.+...+.   ..|.++++|+.|++.+|++..+...+|.+++.|+.|+|.+|.+..+-|.+|..+
T Consensus       360 af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  360 AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM  439 (873)
T ss_pred             HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence            67777777777777777765543   345667777777777777777666777777777777777777777777777766


Q ss_pred             CCCcEEecCC
Q 002896          467 VKLTMLTLSD  476 (869)
Q Consensus       467 ~~L~~L~Ls~  476 (869)
                       .|++|.+..
T Consensus       440 -~Lk~Lv~nS  448 (873)
T KOG4194|consen  440 -ELKELVMNS  448 (873)
T ss_pred             -hhhhhhhcc
Confidence             666666543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.6e-40  Score=331.74  Aligned_cols=490  Identities=31%  Similarity=0.422  Sum_probs=288.1

Q ss_pred             CCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccc
Q 002896          133 LKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN  212 (869)
Q Consensus       133 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  212 (869)
                      |+.|++++|.+. .+-+.+.++..|.+|++.+|+++ ..|++++.+..++.++.++|+++ .+|+.++.+.+|+.++.++
T Consensus        47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~  123 (565)
T KOG0472|consen   47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS  123 (565)
T ss_pred             hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence            444444444444 23334444555555555555544 34445555555555555555544 3444455555555555555


Q ss_pred             cCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccC
Q 002896          213 NSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP  292 (869)
Q Consensus       213 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p  292 (869)
                      |.+. .+|++++.+..|+.++..+|+++ ..|..+..+.+|..+++.+|.+....| ..-+++.|++||...|-+. .+|
T Consensus       124 n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~-~~i~m~~L~~ld~~~N~L~-tlP  199 (565)
T KOG0472|consen  124 NELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPE-NHIAMKRLKHLDCNSNLLE-TLP  199 (565)
T ss_pred             ccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCH-HHHHHHHHHhcccchhhhh-cCC
Confidence            5554 34445555555666666666555 445555556666666666666653333 3333666666666666554 566


Q ss_pred             ccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCC
Q 002896          293 LSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKS  372 (869)
Q Consensus       293 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  372 (869)
                      ..++.+.+|+.|++..|++. .+| .|.+|..|+++.++.|++..........++++..||+.+|++. ..|..+.-+.+
T Consensus       200 ~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs  276 (565)
T KOG0472|consen  200 PELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS  276 (565)
T ss_pred             hhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhh
Confidence            66666667777777777665 444 5666666777776666665433334446666777777777666 55666666677


Q ss_pred             CCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCC---CCccccCCCcCcccccccccCCCCCCeEE
Q 002896          373 LSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKS---LFELQLGDNKLSNSISHSLGNLTHMTLLA  449 (869)
Q Consensus       373 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  449 (869)
                      |++||+++|.++ ..|.+++++ .|+.|.+.+|++... -..+-.+..   |++|.=   .+..   +.+          
T Consensus       277 L~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs---~~~~---dgl----------  337 (565)
T KOG0472|consen  277 LERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRS---KIKD---DGL----------  337 (565)
T ss_pred             hhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHH---hhcc---CCC----------
Confidence            777777777776 355566776 677777777766421 111111111   112110   0000   000          


Q ss_pred             ccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCC--CCCEEeCCCCccc
Q 002896          450 LYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHP--KLTFIDLSHNNFY  527 (869)
Q Consensus       450 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~ls~n~l~  527 (869)
                       +.. -.+....              .....+..|......+.+.|++++-+++..+.+.|....  -....+++.|++.
T Consensus       338 -S~s-e~~~e~~--------------~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~  401 (565)
T KOG0472|consen  338 -SQS-EGGTETA--------------MTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC  401 (565)
T ss_pred             -CCC-ccccccc--------------CCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh
Confidence             000 0000000              000011222333444556666666666655555553322  3566777777776


Q ss_pred             ccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCccccc
Q 002896          528 GQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELG  607 (869)
Q Consensus       528 ~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~  607 (869)
                       .+|..+..+..+++.-+..|+..+.+|..++.+++|..|++++|-+. .+|..++.+..|+.|+++.|.|. ..|..+.
T Consensus       402 -elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y  478 (565)
T KOG0472|consen  402 -ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLY  478 (565)
T ss_pred             -hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHh
Confidence             45555555555554444445555577777888888888888877665 67778888888888888888664 5677777


Q ss_pred             CCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccC
Q 002896          608 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLG  671 (869)
Q Consensus       608 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  671 (869)
                      .+..++.+-.++|++....|+.+.++.+|+.|||.+|.+ ..+|..++++++|++|++++|.+.
T Consensus       479 ~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl-q~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  479 ELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL-QQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch-hhCChhhccccceeEEEecCCccC
Confidence            777777777788888877676788888888888888887 567778888888888888888885

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=7.3e-36  Score=328.20  Aligned_cols=508  Identities=30%  Similarity=0.348  Sum_probs=286.7

Q ss_pred             cccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccC
Q 002896          135 FLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNS  214 (869)
Q Consensus       135 ~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  214 (869)
                      .+|++.+.+. .||..+-.-..++.|++..|.+....-+.+.+.-+|+.|+++.|++. ..|..+..+.+|+.|+++.|.
T Consensus         2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~   79 (1081)
T KOG0618|consen    2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNY   79 (1081)
T ss_pred             CcccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhh
Confidence            3567777766 67776655555888888888766443344555666888888877765 556667777777777777777


Q ss_pred             CCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCcc
Q 002896          215 LSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLS  294 (869)
Q Consensus       215 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~  294 (869)
                      +. ..|.+..++.+|+++.|.+|.+. ..|..+..+++|++|++++|.+. .+|..+..++.++.+..++|.....    
T Consensus        80 i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----  152 (1081)
T KOG0618|consen   80 IR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----  152 (1081)
T ss_pred             Hh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----
Confidence            76 45666777777777777777766 66777777777777777777765 6666677777777777777722211    


Q ss_pred             ccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCC
Q 002896          295 LGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLS  374 (869)
Q Consensus       295 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  374 (869)
                      ++... ++.+++..|.+.+.++..+..+..  .|+|.+|.+. .  ..+..+++|+.+....|++....    ..-++|+
T Consensus       153 lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~  222 (1081)
T KOG0618|consen  153 LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLT  222 (1081)
T ss_pred             hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchh
Confidence            11112 666666666666666655555554  5677766665 1  23445556666666666554221    1224556


Q ss_pred             EEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCC
Q 002896          375 NLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNA  454 (869)
Q Consensus       375 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~  454 (869)
                      .|+.+.|.++...+..  .-.+|+++++++|+++ .+|+++..+.+|+.++..+|.++                      
T Consensus       223 ~L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~----------------------  277 (1081)
T KOG0618|consen  223 ALYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV----------------------  277 (1081)
T ss_pred             eeeeccCcceeecccc--ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH----------------------
Confidence            6666666555222211  1134555555555555 33455555555555555555552                      


Q ss_pred             CcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCC-CCEEeCCCCcccccCCcC
Q 002896          455 LSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPK-LTFIDLSHNNFYGQISSD  533 (869)
Q Consensus       455 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~ls~n~l~~~~~~~  533 (869)
                         .+|..+....+|+.|.+..|.+....+.....++|+.|++..|++....+..+..... |..++.+.|.+.......
T Consensus       278 ---~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~  354 (1081)
T KOG0618|consen  278 ---ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE  354 (1081)
T ss_pred             ---hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccccc
Confidence               2333344444444444444444444444455555555666555554433333332222 455555555544322111


Q ss_pred             cCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCcccc
Q 002896          534 WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLE  613 (869)
Q Consensus       534 ~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  613 (869)
                      =...+.|+.|.+.+|.++...-+.+.+.++|++|+|++|++                        .......+.++..|+
T Consensus       355 e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL------------------------~~fpas~~~kle~Le  410 (1081)
T KOG0618|consen  355 ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL------------------------NSFPASKLRKLEELE  410 (1081)
T ss_pred             chhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc------------------------ccCCHHHHhchHHhH
Confidence            12233445555555555544444444444444444444444                        433334445556666


Q ss_pred             ccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCC
Q 002896          614 YLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNN  693 (869)
Q Consensus       614 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  693 (869)
                      +|+||+|+++ .+|.++..+..|++|..-+|++. ..| ++.++++|+.+|+|.|.++...-..-..-++|++||+++|.
T Consensus       411 eL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  411 ELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             HHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            6666666665 44556666666666666666653 233 56666666666666666654332221222677777777776


Q ss_pred             CCCCcchhhhcCCCCcEEEccCC
Q 002896          694 LSDFIPRCFEEMNGLLYIDISYN  716 (869)
Q Consensus       694 l~~~~p~~l~~l~~L~~L~ls~N  716 (869)
                      -....-..|..+.++..+++.-|
T Consensus       488 ~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  488 RLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             ccccchhhhHHhhhhhheecccC
Confidence            54444556666666666666665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-35  Score=324.48  Aligned_cols=485  Identities=29%  Similarity=0.329  Sum_probs=302.1

Q ss_pred             EEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCc
Q 002896          159 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNK  238 (869)
Q Consensus       159 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  238 (869)
                      ++|++.+.++ .||..+-.-..++.|++..|.+-...-+...+.-+|+.|++++|++. ..|..+..+..|+.|+++.|.
T Consensus         2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~   79 (1081)
T KOG0618|consen    2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNY   79 (1081)
T ss_pred             CcccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhh
Confidence            3566666666 66666655555777777777665433333444445666666666665 455556666666666666666


Q ss_pred             CCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCc
Q 002896          239 LCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSE  318 (869)
Q Consensus       239 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~  318 (869)
                      +. ..|....++.+|+++.|..|.+. ..|..+..+++|+.|++++|++. .+|..+..++.++.+..++|......   
T Consensus        80 i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~l---  153 (1081)
T KOG0618|consen   80 IR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRL---  153 (1081)
T ss_pred             Hh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhh---
Confidence            55 44555556666666666655554 45555555666666666666554 45555555555555555555211111   


Q ss_pred             ccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCccc
Q 002896          319 IGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLA  398 (869)
Q Consensus       319 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  398 (869)
                       +.                        .. ++.+++..|.+.+.++.++..+..  .|++.+|.+. .  ..+..+++|+
T Consensus       154 -g~------------------------~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~  202 (1081)
T KOG0618|consen  154 -GQ------------------------TS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLE  202 (1081)
T ss_pred             -cc------------------------cc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchh
Confidence             11                        11 444444445444444444444433  4555555544 1  1234455555


Q ss_pred             EEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCc
Q 002896          399 ILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ  478 (869)
Q Consensus       399 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  478 (869)
                      .+....|++....    -.-++|+.|+.++|.++.....  ..-.+|++++++.|++++. |.++..+.+|+.++..+|+
T Consensus       203 ~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~  275 (1081)
T KOG0618|consen  203 VLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNR  275 (1081)
T ss_pred             hhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcc-hHHHHhcccceEecccchh
Confidence            5555555554221    1224566666666666522221  2234677777777777754 4777777777777777777


Q ss_pred             CcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCc
Q 002896          479 LQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEI  558 (869)
Q Consensus       479 l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l  558 (869)
                      +..........++|+.|.+..|.+..                         +|........|++|++..|++....+..+
T Consensus       276 l~~lp~ri~~~~~L~~l~~~~nel~y-------------------------ip~~le~~~sL~tLdL~~N~L~~lp~~~l  330 (1081)
T KOG0618|consen  276 LVALPLRISRITSLVSLSAAYNELEY-------------------------IPPFLEGLKSLRTLDLQSNNLPSLPDNFL  330 (1081)
T ss_pred             HHhhHHHHhhhhhHHHHHhhhhhhhh-------------------------CCCcccccceeeeeeehhccccccchHHH
Confidence            64433344445555555555555443                         33334445555555555555542222222


Q ss_pred             CCCC-CCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCC
Q 002896          559 GDSS-QLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLH  637 (869)
Q Consensus       559 ~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  637 (869)
                      .-.. .|..|+.+.|++....-..=..++.|+.|++.+|.++...-..+.+...|+.|+|++|++.......+.++..|+
T Consensus       331 ~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Le  410 (1081)
T KOG0618|consen  331 AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELE  410 (1081)
T ss_pred             hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhH
Confidence            2222 255666666666533222223478899999999999988888888999999999999999866667889999999


Q ss_pred             eeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCc
Q 002896          638 YLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNE  717 (869)
Q Consensus       638 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  717 (869)
                      .|+||+|+++ .+|..+..+..|++|...+|++ ...| .+..++.|+.+|+|.|+|+...-..-..-+.|++||+++|.
T Consensus       411 eL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l-~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  411 ELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQL-LSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             HHhcccchhh-hhhHHHHhhhhhHHHhhcCCce-eech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            9999999985 4679999999999999999999 5566 78999999999999999997643333333899999999997

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.6e-33  Score=295.44  Aligned_cols=371  Identities=29%  Similarity=0.442  Sum_probs=254.7

Q ss_pred             CCCCCcEEeCCCCCCCC-CCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCce
Q 002896          105 NISKLKYLDLSSNSFSG-TIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNE  183 (869)
Q Consensus       105 ~l~~L~~L~Ls~n~~~~-~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  183 (869)
                      -|+..|-.|+++|.|+| .+|.....+++++.|.|....+. .+|..++.|.+|++|.+++|++. .+-..+..++.||.
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS   82 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence            34566677777777774 37777777777777777777766 67777777777777777777766 33345666777777


Q ss_pred             eeccCcccCC-CCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCC
Q 002896          184 LALTSNFLKG-SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS  262 (869)
Q Consensus       184 L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  262 (869)
                      +.+..|++.. -+|..+..+..|..|||++|++. +.|..+..-+++-+|+|++|++..+....+-+++.|-.|+|++|+
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence            7777777643 45666777777777777777776 567677777777777777777764333345567777777777777


Q ss_pred             CCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeeccccccc-CCCCCcccCCCCCCeEeccCCccccccCC
Q 002896          263 FSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLS-GSIPSEIGNLKSLSGLELADNELSSSIPH  341 (869)
Q Consensus       263 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~  341 (869)
                      +. .+|+.+..+..|++|+|++|.+.-.--..+..+++|+.|.+++.+-+ ..+|..+..+.+|..+|++.|.+. ..|.
T Consensus       162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe  239 (1255)
T KOG0444|consen  162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE  239 (1255)
T ss_pred             hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence            76 55666777777777777777664332233344566667777665433 346667777777777777777776 5566


Q ss_pred             CCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccc-cccChhhhCCCC
Q 002896          342 YLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLL-GSIPREIGNLKS  420 (869)
Q Consensus       342 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~  420 (869)
                      .+.++++|+.|+|++|.++. +....+...+|++|+++.|+++ .+|++++.++.|+.|++.+|++. .-+|..++.+..
T Consensus       240 cly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~  317 (1255)
T KOG0444|consen  240 CLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ  317 (1255)
T ss_pred             HHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence            67777777777777777763 3334445567777777777777 66777777777777777777764 246777777777


Q ss_pred             CCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCC
Q 002896          421 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP  484 (869)
Q Consensus       421 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  484 (869)
                      |+.+..++|.+. ..|..++.|..|+.|.++.|.+. .+|+.+.-++.|+.||+.+|+-.-..|
T Consensus       318 Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  318 LEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            777777777664 56777777777777777777776 456777777777777777776554443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=8.2e-32  Score=282.59  Aligned_cols=386  Identities=30%  Similarity=0.424  Sum_probs=324.6

Q ss_pred             CCCCcCCcccCCCccCC-CCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccc
Q 002896          128 GNLSMLKFLYLSANQFS-GRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLA  206 (869)
Q Consensus       128 ~~l~~L~~L~Ls~n~~~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  206 (869)
                      +-|+-.|-.|+++|.++ +..|..+..++.++-|.|....+. .+|+.++.|.+|++|.+++|++. .+-..++.++.|+
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR   81 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence            44566788899999998 578999999999999999999987 88999999999999999999987 3445678899999


Q ss_pred             eeeccccCCC-CCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcc
Q 002896          207 ILYLHNNSLS-GSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN  285 (869)
Q Consensus       207 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  285 (869)
                      .+.+..|++. .-+|..+..+..|+.|||+.|++. ..|..+..-+++-.|+|++|+|..+...-|.+++.|-.|||++|
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence            9999999975 347888999999999999999998 78999999999999999999998655556789999999999999


Q ss_pred             cCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccc-cccCCCCcCccccceeeccCCcCCCCCc
Q 002896          286 RLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELS-SSIPHYLGNLTNLAAFYLYKNSLSGSIP  364 (869)
Q Consensus       286 ~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~  364 (869)
                      ++. .+|+.+..+..|++|.|++|.+...--..+..+++|+.|.+++.+-+ ..+|..+..+.+|..++++.|++. ..|
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP  238 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP  238 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence            997 67778899999999999999876433334455677888888886544 357888999999999999999998 789


Q ss_pred             cccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcc-cccccccCCC
Q 002896          365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN-SISHSLGNLT  443 (869)
Q Consensus       365 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~  443 (869)
                      +.+..+++|+.|++++|+++. +....+...+|++|+++.|+++ .+|.++..+++|+.|.+.+|+++- -+|..++.+.
T Consensus       239 ecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~  316 (1255)
T KOG0444|consen  239 ECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI  316 (1255)
T ss_pred             HHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence            999999999999999999984 3334455678999999999998 789999999999999999998873 4788899999


Q ss_pred             CCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeC
Q 002896          444 HMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDL  521 (869)
Q Consensus       444 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  521 (869)
                      +|+.+..++|.+. ..|+.++.|.+|+.|.|+.|++......+.-++.|+.|++..|.--.-+|..-..-.+++.-++
T Consensus       317 ~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI  393 (1255)
T KOG0444|consen  317 QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI  393 (1255)
T ss_pred             hhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence            9999999999886 7789999999999999999998876667888899999999988644333332222234554443

>PLN03210 Resistant to P

Probab=99.91  E-value=4.9e-23  Score=255.51  Aligned_cols=364  Identities=22%  Similarity=0.282  Sum_probs=226.0

Q ss_pred             CCEEEEeCCCCCcccc--cCCcCCCCCCCCcEEeCCCCCC------CCCCCCCCCCCC-cCCcccCCCccCCCCCCcccC
Q 002896           82 GRVNSINLTNVNQIFG--IIPPQIGNISKLKYLDLSSNSF------SGTIPPQIGNLS-MLKFLYLSANQFSGRIPPQIG  152 (869)
Q Consensus        82 ~~v~~l~l~~~~~l~~--~~~~~l~~l~~L~~L~Ls~n~~------~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~p~~l~  152 (869)
                      .+|.++.+.-.. +..  .-+.+|..+++|+.|.+..+.+      ...+|..+..++ +||.|++.++.+. .+|..| 
T Consensus       532 ~~v~~i~l~~~~-~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-  608 (1153)
T PLN03210        532 KKVLGITLDIDE-IDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-  608 (1153)
T ss_pred             ceeeEEEeccCc-cceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-
Confidence            456666654322 211  1233578889999998866532      334677777764 5888998888776 777777 


Q ss_pred             CCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEE
Q 002896          153 HLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSL  232 (869)
Q Consensus       153 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  232 (869)
                      ...+|++|++.+|.+. .+|..+..+++|++|+|+++.....+|. ++.+++|+.|++++|.....+|..++++++|++|
T Consensus       609 ~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L  686 (1153)
T PLN03210        609 RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL  686 (1153)
T ss_pred             CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence            5688888998888876 5677778888888888888765555553 7778888888888877666778788888888888


Q ss_pred             EccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeeccccccc
Q 002896          233 ALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLS  312 (869)
Q Consensus       233 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~  312 (869)
                      ++++|..-+.+|..+ ++++|+.|++++|...+.+|..   .++|+.|++++|.+. .+|..+ .+++|++|.+.++...
T Consensus       687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~  760 (1153)
T PLN03210        687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE  760 (1153)
T ss_pred             eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence            888776555666554 6777888888877655555532   346677777777765 455443 4566666666553321


Q ss_pred             CCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCC
Q 002896          313 GSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLG  392 (869)
Q Consensus       313 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~  392 (869)
                       .+...+                ....+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ 
T Consensus       761 -~l~~~~----------------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-  822 (1153)
T PLN03210        761 -KLWERV----------------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-  822 (1153)
T ss_pred             -hccccc----------------cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-
Confidence             010000                00011111223455555555555555555555566666666666554434445443 


Q ss_pred             CCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEE
Q 002896          393 NLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTML  472 (869)
Q Consensus       393 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  472 (869)
                      .+++|+.|++++|.....+|..   .++|++|++++|.+.. +|..+..+++|+.|++++|.--..+|..+..+++|+.+
T Consensus       823 ~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L  898 (1153)
T PLN03210        823 NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETV  898 (1153)
T ss_pred             CccccCEEECCCCCcccccccc---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCee
Confidence            4556666666665544343332   2456666666666653 45556666666666666654444455566667777777


Q ss_pred             ecCCCc
Q 002896          473 TLSDNQ  478 (869)
Q Consensus       473 ~Ls~n~  478 (869)
                      ++++|.
T Consensus       899 ~l~~C~  904 (1153)
T PLN03210        899 DFSDCG  904 (1153)
T ss_pred             ecCCCc
Confidence            776664

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=1.2e-22  Score=252.10  Aligned_cols=338  Identities=22%  Similarity=0.258  Sum_probs=203.9

Q ss_pred             CCCCCCCcCCcccCCCcc------CCCCCCcccCCCC-CCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCC
Q 002896          125 PQIGNLSMLKFLYLSANQ------FSGRIPPQIGHLS-YIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPP  197 (869)
Q Consensus       125 ~~l~~l~~L~~L~Ls~n~------~~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~  197 (869)
                      .+|.++++|++|.+..+.      +...+|..|..++ +|+.|++.++.+. .+|..+ ...+|++|++.++++. .++.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence            345556666666664432      2223444454442 4566666555554 444444 3455555555555544 2344


Q ss_pred             ccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccC
Q 002896          198 SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSL  277 (869)
Q Consensus       198 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  277 (869)
                      .+..+++|+.|+++++.....+|. ++.+++|++|++++|.....+|..++.+++|+.|++++|...+.+|..+ ++++ 
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s-  705 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS-  705 (1153)
T ss_pred             ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC-
Confidence            444555555555555443333332 4445555555555544444445555555555555555543333344332 3444 


Q ss_pred             CccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCC
Q 002896          278 SILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKN  357 (869)
Q Consensus       278 ~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  357 (869)
                                             |+.|++++|...+.+|..   .++|+.|++++|.+. .+|..+ .+++|+.|.+.++
T Consensus       706 -----------------------L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~  757 (1153)
T PLN03210        706 -----------------------LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEM  757 (1153)
T ss_pred             -----------------------CCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-ccccccccccccc
Confidence                                   444444444333333321   234455555555543 223222 3444555554442


Q ss_pred             cC-------CCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCc
Q 002896          358 SL-------SGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNK  430 (869)
Q Consensus       358 ~l-------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  430 (869)
                      ..       ....+.....+++|+.|++++|...+.+|.+++++++|+.|++++|...+.+|..+ .+++|+.|++++|.
T Consensus       758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~  836 (1153)
T PLN03210        758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS  836 (1153)
T ss_pred             chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence            21       11112223345789999999998888899999999999999999997777788766 78999999999987


Q ss_pred             CcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCC-CcCCCCCCCEEECcCCc
Q 002896          431 LSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNH  501 (869)
Q Consensus       431 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~l~~n~  501 (869)
                      ....+|..   .++|+.|++++|.++ .+|.++..+++|+.|++++|+-...++ ....+++|+.+++++|.
T Consensus       837 ~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        837 RLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            65555432   368999999999997 578889999999999999976555554 67888999999999884

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=3.9e-24  Score=214.77  Aligned_cols=407  Identities=22%  Similarity=0.196  Sum_probs=186.6

Q ss_pred             CCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCc-ccCCcccCccccCCCCCCeeecc
Q 002896          229 LSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGE-NRLNGSIPLSLGNLTNLDTLYLY  307 (869)
Q Consensus       229 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~~~~~~p~~l~~l~~L~~L~L~  307 (869)
                      -..++|..|+|+...|..|+.+++|+.|+|++|+|+.+-|++|..+++|..|-+.+ |+|+......|+++..|+.|.+.
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            34455555555544445555555555555555555555555555555554444443 55544333445555555555555


Q ss_pred             cccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCC
Q 002896          308 TNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSI  387 (869)
Q Consensus       308 ~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  387 (869)
                      -|.+.......|..+++|..|.+.+|.+...--..|..+..++.+.+..|.+-.     ..+++.+..       +....
T Consensus       149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~-------~~a~~  216 (498)
T KOG4237|consen  149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLAD-------DLAMN  216 (498)
T ss_pred             hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhh-------HHhhc
Confidence            555544444445555555555555555443333344444455555544444210     011111100       00111


Q ss_pred             CCCCCCCCcccEEEccCCccccccChhhhCC-CCCCccccCCCcCccc-ccccccCCCCCCeEEccCCCCcccCCccccC
Q 002896          388 PHSLGNLTNLAILYLHSNTLLGSIPREIGNL-KSLFELQLGDNKLSNS-ISHSLGNLTHMTLLALYDNALSGVIPEELGN  465 (869)
Q Consensus       388 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  465 (869)
                      |..++......-..+.+.++...-+..|... .++..=-.+.+...+. ....|..+++|+.|++++|+++++.+.+|.+
T Consensus       217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~  296 (498)
T KOG4237|consen  217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG  296 (498)
T ss_pred             hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence            1222222222222233333322222222111 1111111111212221 1223555666666666666666666666666


Q ss_pred             CCCCcEEecCCCcCcCCCC-CcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCc-----C------
Q 002896          466 LVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISS-----D------  533 (869)
Q Consensus       466 l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-----~------  533 (869)
                      ...+++|.|..|++...-. .|.++..|+.|++.+|+|+...|..|.....|.+|++-.|.+.-.---     +      
T Consensus       297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~  376 (498)
T KOG4237|consen  297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSV  376 (498)
T ss_pred             hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCC
Confidence            6666666666665543222 455555566666666666666666666666666666655544211000     0      


Q ss_pred             -----cCCCCCCcEEEccCCCCCCC---CCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCccc
Q 002896          534 -----WGKCPNLGTFDVSVNNIIGS---LPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSE  605 (869)
Q Consensus       534 -----~~~~~~L~~L~ls~n~l~~~---~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~  605 (869)
                           -+....++.+.+++..+...   .|+..+-            .-   -+..-..++.+.+..=-.|+....+|..
T Consensus       377 ~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~------------~~---s~~cP~~c~c~~tVvRcSnk~lk~lp~~  441 (498)
T KOG4237|consen  377 VGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGC------------LT---SSPCPPPCTCLDTVVRCSNKLLKLLPRG  441 (498)
T ss_pred             CCCCCCCCCchhccccchhccccccccCCccccCC------------CC---CCCCCCCcchhhhhHhhcccchhhcCCC
Confidence                 00111233333333322110   0110000            00   0001112344444433344444444443


Q ss_pred             ccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhccccccccccccc
Q 002896          606 LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHN  668 (869)
Q Consensus       606 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  668 (869)
                      +  ...-++|++.+|.++ .+|..  .+.+| .+|+|+|+++...-..|.++++|.+|-||+|
T Consensus       442 i--P~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  442 I--PVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             C--CchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            2  234567778888877 44544  55667 7888888877666667788888888888776

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=5.8e-24  Score=213.50  Aligned_cols=426  Identities=24%  Similarity=0.245  Sum_probs=221.9

Q ss_pred             cCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccC-CcCCCCcccccCCCCCCCEEEc
Q 002896          180 SLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN-NKLCGSIPLFLGNLTNLDTLYL  258 (869)
Q Consensus       180 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L  258 (869)
                      .-..++|..|.|+...+.+|+.+++|+.|||++|.|+.+-|.+|..+++|..|-+.+ |+|+......|+++..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            445667777777766666777777777777777777766666676666665554443 6666444455666666666666


Q ss_pred             cCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccc
Q 002896          259 RNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSS  338 (869)
Q Consensus       259 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~  338 (869)
                      .-|++.-...+.|..+++|..|.+..|.+...--..|..+..++.+.+..|.+..     ..+++.+..       +...
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~-------~~a~  215 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLAD-------DLAM  215 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhh-------HHhh
Confidence            6666555555555566666666666665553322355555556666555554321     111111111       1111


Q ss_pred             cCCCCcCccccceeeccCCcCCCCCccccCCC-CCCCEEEccCCcCCCCCC-CCCCCCCcccEEEccCCccccccChhhh
Q 002896          339 IPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNL-KSLSNLDLSENKLSGSIP-HSLGNLTNLAILYLHSNTLLGSIPREIG  416 (869)
Q Consensus       339 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~  416 (869)
                      .|..++...-.....+.+.++...-+..|... .++..--.+.+...+..| ..|..+++|+.|++++|+++++-+.+|.
T Consensus       216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe  295 (498)
T KOG4237|consen  216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE  295 (498)
T ss_pred             chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence            22233333333334444444443322222211 111111112222222333 2466777777777777777777777777


Q ss_pred             CCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCC--CcCCCCCCCE
Q 002896          417 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP--NLRNLTNLIR  494 (869)
Q Consensus       417 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~l~~l~~L~~  494 (869)
                      +...+++|.|..|++.......|.++..|+.|+|++|+++...|.+|..+.+|.+|++-.|++.-.-.  .+..      
T Consensus       296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~------  369 (498)
T KOG4237|consen  296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE------  369 (498)
T ss_pred             chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH------
Confidence            77777777777777776666677777777777777777777777777777777777777766542110  0000      


Q ss_pred             EECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcc
Q 002896          495 LRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHI  574 (869)
Q Consensus       495 L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  574 (869)
                       .+.+....+..  ..+....++.+++++..+...-..      .=++..   +.-++.-|   ..++-+.+..=-.|+.
T Consensus       370 -Wlr~~~~~~~~--~Cq~p~~~~~~~~~dv~~~~~~c~------~~ee~~---~~~s~~cP---~~c~c~~tVvRcSnk~  434 (498)
T KOG4237|consen  370 -WLRKKSVVGNP--RCQSPGFVRQIPISDVAFGDFRCG------GPEELG---CLTSSPCP---PPCTCLDTVVRCSNKL  434 (498)
T ss_pred             -HHhhCCCCCCC--CCCCCchhccccchhccccccccC------CccccC---CCCCCCCC---CCcchhhhhHhhcccc
Confidence             00011101111  111222345555555443211100      000000   00000111   1222222221111222


Q ss_pred             cccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCC
Q 002896          575 IGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN  644 (869)
Q Consensus       575 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  644 (869)
                      ...+|..+.  ..-.+|++.+|.++.+..+   .+.+| .+|+++|+++......|.++++|.+|-||+|
T Consensus       435 lk~lp~~iP--~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  435 LKLLPRGIP--VDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hhhcCCCCC--chhHHHhcccchhcccCHH---HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            223333332  2334666777766644333   55666 7888888887766677888888888888775

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=3.9e-20  Score=212.36  Aligned_cols=267  Identities=25%  Similarity=0.314  Sum_probs=155.0

Q ss_pred             CCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEc
Q 002896          371 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLAL  450 (869)
Q Consensus       371 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l  450 (869)
                      ..-..|+++.+.++ .+|..+.  ++|+.|++.+|+++. +|.   ..++|++|++++|+++.. |.   ..++|+.|++
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence            44567889998888 5676664  478888888888873 453   246777777777777643 32   1346666666


Q ss_pred             cCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccC
Q 002896          451 YDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQI  530 (869)
Q Consensus       451 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~  530 (869)
                      ++|.++. +|..   ..+|+.|++++|++.....   .+                        ++|+.|++++|++++. 
T Consensus       270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p------------------------~~L~~LdLS~N~L~~L-  317 (788)
T PRK15387        270 FSNPLTH-LPAL---PSGLCKLWIFGNQLTSLPV---LP------------------------PGLQELSVSDNQLASL-  317 (788)
T ss_pred             cCCchhh-hhhc---hhhcCEEECcCCccccccc---cc------------------------cccceeECCCCccccC-
Confidence            6666653 2221   2345555555555543211   12                        3455555555554432 


Q ss_pred             CcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCc
Q 002896          531 SSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLI  610 (869)
Q Consensus       531 ~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  610 (869)
                      |..   ..+|+.|++++|.+++ +|..   ..+|++|++++|++++ +|..   .++|+.|++++|++.+ +|..   ..
T Consensus       318 p~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~  382 (788)
T PRK15387        318 PAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PS  382 (788)
T ss_pred             CCC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---cc
Confidence            211   1234455555555542 3321   1356666666666653 3322   2355566666666653 3332   24


Q ss_pred             cccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCC
Q 002896          611 QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLS  690 (869)
Q Consensus       611 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  690 (869)
                      +|+.|++++|++++ +|..   .++|+.|++++|++++ +|..   ..+|+.|++++|+++ .+|..+.++++|+.|+|+
T Consensus       383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  453 (788)
T ss_pred             ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence            56777777777764 3432   2467777777777764 4433   235667777777774 567777777777777777


Q ss_pred             CCCCCCCcchhhhc
Q 002896          691 HNNLSDFIPRCFEE  704 (869)
Q Consensus       691 ~N~l~~~~p~~l~~  704 (869)
                      +|++++.+|..+..
T Consensus       454 ~N~Ls~~~~~~L~~  467 (788)
T PRK15387        454 GNPLSERTLQALRE  467 (788)
T ss_pred             CCCCCchHHHHHHH
Confidence            77777777766643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.82  E-value=1.5e-19  Score=207.67  Aligned_cols=264  Identities=25%  Similarity=0.311  Sum_probs=167.3

Q ss_pred             ccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccC
Q 002896          348 NLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLG  427 (869)
Q Consensus       348 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  427 (869)
                      .-..|+++.+.++ .+|..+.  ++|+.|++.+|+++. +|.   ..++|++|++++|+++. +|..   .++|+.|+++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence            4567899999998 6777665  489999999999985 554   25799999999999984 5542   4689999999


Q ss_pred             CCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccC
Q 002896          428 DNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNIS  507 (869)
Q Consensus       428 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~  507 (869)
                      +|.+... |..   ..+|+.|++++|+++.. |.   ..++|+.|++++|++.+. |.+  ..+|+.|++++|.+++. |
T Consensus       271 ~N~L~~L-p~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~L-p~l--p~~L~~L~Ls~N~L~~L-P  338 (788)
T PRK15387        271 SNPLTHL-PAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PAL--PSELCKLWAYNNQLTSL-P  338 (788)
T ss_pred             CCchhhh-hhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCccccC-CCC--cccccccccccCccccc-c
Confidence            9998753 322   35788999999999854 43   247899999999999864 322  34577788888877653 2


Q ss_pred             ccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcc
Q 002896          508 ESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSS  587 (869)
Q Consensus       508 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  587 (869)
                      .   ...+|+.|++++|++++ +|..   .++|+.|++++|.+++ +|..   ..+|+.|++++|++++ +|..   .++
T Consensus       339 ~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~  403 (788)
T PRK15387        339 T---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSE  403 (788)
T ss_pred             c---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccC
Confidence            2   12467777777777764 3322   2456666666666653 4432   2356666666666653 3321   134


Q ss_pred             cceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhh
Q 002896          588 LIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL  654 (869)
Q Consensus       588 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  654 (869)
                      |+.|++++|++.+ +|..   +.+|+.|++++|+++ .+|..+..+++|+.|+|++|++++.++..+
T Consensus       404 L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        404 LKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            5555555555543 2321   223444555555544 344444444555555555555544444433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=3.8e-19  Score=205.91  Aligned_cols=245  Identities=25%  Similarity=0.409  Sum_probs=143.6

Q ss_pred             CCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccc
Q 002896          133 LKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN  212 (869)
Q Consensus       133 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  212 (869)
                      ...|+++++.++ .+|..+.  .+|+.|++++|.++ .+|..+.  .+|++|++++|+++. +|..+.  ++|+.|++++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSI  250 (754)
T ss_pred             ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcC
Confidence            445555555554 3444332  34555666665555 3444332  356666666665552 333332  2566666666


Q ss_pred             cCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccC
Q 002896          213 NSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP  292 (869)
Q Consensus       213 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p  292 (869)
                      |.+. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|+++. +|
T Consensus       251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP  320 (754)
T PRK15370        251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LP  320 (754)
T ss_pred             CccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CC
Confidence            6665 4454443  35667777766666 3454443  367777777776663 444332  357777777777763 44


Q ss_pred             ccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCC
Q 002896          293 LSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKS  372 (869)
Q Consensus       293 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  372 (869)
                      ..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++. +|..+.  ++|+.|++++|.++ .+|..+.  ..
T Consensus       321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~s  389 (754)
T PRK15370        321 ETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETLP--PTITTLDVSRNALT-NLPENLP--AA  389 (754)
T ss_pred             ccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhhc--CCcCEEECCCCcCC-CCCHhHH--HH
Confidence            333  2567777777777764 554442  577777777777763 444332  56777788777777 3454443  35


Q ss_pred             CCEEEccCCcCCCCCCCCC----CCCCcccEEEccCCccc
Q 002896          373 LSNLDLSENKLSGSIPHSL----GNLTNLAILYLHSNTLL  408 (869)
Q Consensus       373 L~~L~Ls~n~l~~~~~~~l----~~l~~L~~L~L~~n~l~  408 (869)
                      |+.|++++|++. .+|..+    ..++.+..+++.+|++.
T Consensus       390 L~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        390 LQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            777788888776 344433    34577888888888876

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=4.9e-18  Score=196.77  Aligned_cols=268  Identities=25%  Similarity=0.345  Sum_probs=181.2

Q ss_pred             CCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECc
Q 002896          419 KSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLN  498 (869)
Q Consensus       419 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~  498 (869)
                      .+...|+++++.++. +|..+.  +.++.|++++|+++. +|..+.  .+|++|++++|.+......+  ..+|+.|+++
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls  249 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELS  249 (754)
T ss_pred             cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccccCChhh--hccccEEECc
Confidence            356788888888875 344343  578899999998885 444443  58899999999887543233  2478888888


Q ss_pred             CCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccC
Q 002896          499 RNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKI  578 (869)
Q Consensus       499 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  578 (869)
                      +|.+.. +|..+.  .+|+.|++++|+++. +|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|+++. +
T Consensus       250 ~N~L~~-LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L  319 (754)
T PRK15370        250 INRITE-LPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L  319 (754)
T ss_pred             CCccCc-CChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence            888874 344432  478888888888874 455442  578888888888874 454433  468888888888874 4


Q ss_pred             CcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhccc
Q 002896          579 PSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLI  658 (869)
Q Consensus       579 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  658 (869)
                      |..+.  ++|+.|++++|.+++ +|..+  .++|+.|++++|+++ .+|..+.  ++|+.|+|++|++++ +|..+.  .
T Consensus       320 P~~l~--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~  388 (754)
T PRK15370        320 PETLP--PGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--A  388 (754)
T ss_pred             Ccccc--ccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--H
Confidence            54433  678888888888775 45443  367888888888887 4565543  678888888888864 455554  3


Q ss_pred             ccccccccccccCCc---hhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccC
Q 002896          659 HLSELDLSHNFLGKE---IPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPI  722 (869)
Q Consensus       659 ~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~  722 (869)
                      .|+.|++++|++++.   +|..+..++.+..|++.+|+++.   ..+.+   |+.+ ++.+.+.|++
T Consensus       389 sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~---~tl~~---L~~L-l~s~~~~gp~  448 (754)
T PRK15370        389 ALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE---RTIQN---MQRL-MSSVGYQGPR  448 (754)
T ss_pred             HHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH---HHHHH---HHHh-hhcccccCCc
Confidence            688888888888632   33344455778888888888874   33333   3333 3445555543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=1.5e-19  Score=195.57  Aligned_cols=279  Identities=23%  Similarity=0.237  Sum_probs=157.2

Q ss_pred             ccccCCCcCc-ccccccccCCCCCCeEEccCCCCccc----CCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEEC
Q 002896          423 ELQLGDNKLS-NSISHSLGNLTHMTLLALYDNALSGV----IPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRL  497 (869)
Q Consensus       423 ~L~Ls~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l  497 (869)
                      .|+|..+.++ ......+..+..|+.++++++.++..    ++..+...+.+++++++++.+.+....            
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~------------   69 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRG------------   69 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchH------------
Confidence            4566666665 23334445566677777777776432    333444555566666666554320000            


Q ss_pred             cCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCC---CCCcEEEccCCCCCCC----CCcCcCCC-CCCCEEEc
Q 002896          498 NRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKC---PNLGTFDVSVNNIIGS----LPPEIGDS-SQLHVIDL  569 (869)
Q Consensus       498 ~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~---~~L~~L~ls~n~l~~~----~p~~l~~l-~~L~~L~L  569 (869)
                           ....+..+..+++|+.|++++|.+.+..+..+..+   ++|++|++++|++++.    +...+..+ ++|+.|++
T Consensus        70 -----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L  144 (319)
T cd00116          70 -----LQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL  144 (319)
T ss_pred             -----HHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc
Confidence                 01112233344555555555555543333333222   2366666666665521    22233444 66777777


Q ss_pred             cCCccccc----CCcccccCcccceeeccCcccccc----CcccccCCcccccccccccccccc----ccccccCCCCCC
Q 002896          570 SANHIIGK----IPSEIGKLSSLIKLILRRNQLFGQ----LPSELGSLIQLEYLDLSSNRLSNS----IPRSLGNLVKLH  637 (869)
Q Consensus       570 s~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~  637 (869)
                      ++|.+++.    ++..+..+++|++|++++|.+.+.    ++..+..+++|++|++++|.+++.    ++..+..+++|+
T Consensus       145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~  224 (319)
T cd00116         145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE  224 (319)
T ss_pred             CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCC
Confidence            77766632    223345556677777777766532    233344556777777777776543    233456677788


Q ss_pred             eeeCcCCcCCcccchhhhc-----ccccccccccccccCC----chhhhhcCCCCCcEEeCCCCCCCCC----cchhhhc
Q 002896          638 YLNLSTNQFIQEIPIKLEK-----LIHLSELDLSHNFLGK----EIPSQICNMRSLEMLNLSHNNLSDF----IPRCFEE  704 (869)
Q Consensus       638 ~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~  704 (869)
                      .|++++|++++.....+..     .+.|+.|++++|.++.    .+.+.+..+++|+++++++|.++..    ....+..
T Consensus       225 ~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~  304 (319)
T cd00116         225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLE  304 (319)
T ss_pred             EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhh
Confidence            8888888776543333322     2678888888887762    3445566667888888888888755    3333433


Q ss_pred             C-CCCcEEEccCCcc
Q 002896          705 M-NGLLYIDISYNEL  718 (869)
Q Consensus       705 l-~~L~~L~ls~N~l  718 (869)
                      . +.|+.+++.+|++
T Consensus       305 ~~~~~~~~~~~~~~~  319 (319)
T cd00116         305 PGNELESLWVKDDSF  319 (319)
T ss_pred             cCCchhhcccCCCCC
Confidence            3 5777888877764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=8.3e-19  Score=189.67  Aligned_cols=276  Identities=26%  Similarity=0.287  Sum_probs=169.8

Q ss_pred             EEEccCCccc-cccChhhhCCCCCCccccCCCcCccc----ccccccCCCCCCeEEccCCCCcc------cCCccccCCC
Q 002896          399 ILYLHSNTLL-GSIPREIGNLKSLFELQLGDNKLSNS----ISHSLGNLTHMTLLALYDNALSG------VIPEELGNLV  467 (869)
Q Consensus       399 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~------~~~~~~~~l~  467 (869)
                      .|+|..+.++ +.....+..+..|++|+++++.+++.    ++..+...+.++.++++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4677888887 44556677888899999999998653    45556778889999999998763      2334556677


Q ss_pred             CCcEEecCCCcCcCCCC-CcCCC---CCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCC-CCCcE
Q 002896          468 KLTMLTLSDNQLQGSIP-NLRNL---TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKC-PNLGT  542 (869)
Q Consensus       468 ~L~~L~Ls~n~l~~~~~-~l~~l---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~-~~L~~  542 (869)
                      +|+.|++++|.+.+..+ .+..+   ++|++|++++|.++.....                    .+...+..+ ++|+.
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~--------------------~l~~~l~~~~~~L~~  141 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR--------------------LLAKGLKDLPPALEK  141 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH--------------------HHHHHHHhCCCCceE
Confidence            88888888777764322 12222   3366666665555421110                    111122223 44555


Q ss_pred             EEccCCCCCCC----CCcCcCCCCCCCEEEccCCccccc----CCcccccCcccceeeccCcccccc----CcccccCCc
Q 002896          543 FDVSVNNIIGS----LPPEIGDSSQLHVIDLSANHIIGK----IPSEIGKLSSLIKLILRRNQLFGQ----LPSELGSLI  610 (869)
Q Consensus       543 L~ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~  610 (869)
                      |++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+.+.    ++..+..++
T Consensus       142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~  221 (319)
T cd00116         142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK  221 (319)
T ss_pred             EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence            55555554422    222344455566666666665531    222334455666666666666433    233455667


Q ss_pred             ccccccccccccccccccccc-----CCCCCCeeeCcCCcCC----cccchhhhcccccccccccccccCCc----hhhh
Q 002896          611 QLEYLDLSSNRLSNSIPRSLG-----NLVKLHYLNLSTNQFI----QEIPIKLEKLIHLSELDLSHNFLGKE----IPSQ  677 (869)
Q Consensus       611 ~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~  677 (869)
                      +|++|++++|.+++.....+.     ..+.|+.|++++|.++    ..+...+..+++|+++++++|.++..    ....
T Consensus       222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~  301 (319)
T cd00116         222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES  301 (319)
T ss_pred             CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence            788888888877653222221     2478889999988886    23345566778899999999999855    4455


Q ss_pred             hcCC-CCCcEEeCCCCCC
Q 002896          678 ICNM-RSLEMLNLSHNNL  694 (869)
Q Consensus       678 l~~l-~~L~~L~Ls~N~l  694 (869)
                      +... +.|++|++.+|++
T Consensus       302 ~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         302 LLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HhhcCCchhhcccCCCCC
Confidence            5555 7889999888864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=1.8e-18  Score=154.28  Aligned_cols=164  Identities=34%  Similarity=0.575  Sum_probs=118.7

Q ss_pred             CCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCc
Q 002896          103 IGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLN  182 (869)
Q Consensus       103 l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  182 (869)
                      +.++.+.+.|.||+|+++ .+|..+..+.+|+.|++++|++. .+|.+++.+++|++|++.-|.+. ..|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            456677888888888887 66777888888888888888887 77888888888888888888776 6777888888888


Q ss_pred             eeeccCcccCC-CCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCC
Q 002896          183 ELALTSNFLKG-SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNN  261 (869)
Q Consensus       183 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  261 (869)
                      .|||.+|++.. .+|..|..++.|+.|+|+.|.+. .+|..++++++|+.|.+..|.+- .+|..++.+++|++|.+.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            88888877753 55666777777777777777666 55666666666666666666655 45666666666666666666


Q ss_pred             CCCCCCCCCCC
Q 002896          262 SFSSSIPSEIG  272 (869)
Q Consensus       262 ~l~~~~~~~l~  272 (869)
                      +++ .+|..++
T Consensus       184 rl~-vlppel~  193 (264)
T KOG0617|consen  184 RLT-VLPPELA  193 (264)
T ss_pred             eee-ecChhhh
Confidence            655 4444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=7.6e-18  Score=150.32  Aligned_cols=164  Identities=35%  Similarity=0.565  Sum_probs=120.6

Q ss_pred             CCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccc
Q 002896          127 IGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLA  206 (869)
Q Consensus       127 l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  206 (869)
                      +-.+.+.+.|.||+|.++ .+|+.+..+.+|++|++++|+++ .+|..++.+++|++|+++-|++. ..|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            445677888889999888 77778888888888888888887 67778888888888888888776 5677777777777


Q ss_pred             eeeccccCCCC-CCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcc
Q 002896          207 ILYLHNNSLSG-SIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN  285 (869)
Q Consensus       207 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  285 (869)
                      +|||.+|.+.. .+|..|..++.|+.|.++.|.+. .+|..++++++|+.|.++.|.+- .+|..++.++.|++|.+.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            77777777653 46666667777777777777766 66666777777777777777665 56666777777777777777


Q ss_pred             cCCcccCcccc
Q 002896          286 RLNGSIPLSLG  296 (869)
Q Consensus       286 ~~~~~~p~~l~  296 (869)
                      +++ .+|..++
T Consensus       184 rl~-vlppel~  193 (264)
T KOG0617|consen  184 RLT-VLPPELA  193 (264)
T ss_pred             eee-ecChhhh
Confidence            766 3444443

>PLN03150 hypothetical protein; Provisional

Probab=99.57  E-value=1.1e-14  Score=168.81  Aligned_cols=148  Identities=35%  Similarity=0.609  Sum_probs=109.4

Q ss_pred             cCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCC-----ccCceeeCC---C--CCEEEEeCCCCCcccccCCc
Q 002896           32 SDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPC-----AWFGIHCNH---V--GRVNSINLTNVNQIFGIIPP  101 (869)
Q Consensus        32 ~~~~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~~~~~~~c-----~w~gv~c~~---~--~~v~~l~l~~~~~l~~~~~~  101 (869)
                      ...++|.+||+++|+.+.. + .  ..+|.    .  ++|     .|.||.|..   .  .+|+.|+|++.. +.|.+|+
T Consensus       368 ~t~~~~~~aL~~~k~~~~~-~-~--~~~W~----g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~-L~g~ip~  436 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGL-P-L--RFGWN----G--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQG-LRGFIPN  436 (623)
T ss_pred             ccCchHHHHHHHHHHhcCC-c-c--cCCCC----C--CCCCCcccccccceeeccCCCCceEEEEEECCCCC-ccccCCH
Confidence            3456899999999999864 3 1  24896    2  334     799999952   1  247788888777 7888888


Q ss_pred             CCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCC-Cc
Q 002896          102 QIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGL-SS  180 (869)
Q Consensus       102 ~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~  180 (869)
                      .++++++|+.|+|++|.+.|.+|..++.+++|++|+|++|.++|.+|..++++++|++|+|++|.++|.+|..++++ .+
T Consensus       437 ~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~  516 (623)
T PLN03150        437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLH  516 (623)
T ss_pred             HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcccc
Confidence            88888888888888888887788778888888888888888887778777777888888888777777777766543 34


Q ss_pred             CceeeccCcc
Q 002896          181 LNELALTSNF  190 (869)
Q Consensus       181 L~~L~L~~n~  190 (869)
                      +..+++.+|.
T Consensus       517 ~~~l~~~~N~  526 (623)
T PLN03150        517 RASFNFTDNA  526 (623)
T ss_pred             CceEEecCCc
Confidence            4555555554

>PLN03150 hypothetical protein; Provisional

Probab=99.55  E-value=1.5e-14  Score=167.77  Aligned_cols=117  Identities=29%  Similarity=0.508  Sum_probs=77.3

Q ss_pred             CCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccC
Q 002896          636 LHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISY  715 (869)
Q Consensus       636 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  715 (869)
                      ++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.|.+|..++.+++|+.|||++|++++.+|..++.+++|++|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            55666666666666666666666666777777766666666667777777777777777777777777777777777777


Q ss_pred             CcccccCCCCc--cccccchhhhcCCCCCCCCCCCCCCCC
Q 002896          716 NELHGPIPNST--AFSDALMEALQGNEGLCGDIKGFQSCK  753 (869)
Q Consensus       716 N~l~g~~p~~~--~~~~~~~~~~~gn~~lc~~~~~~~~C~  753 (869)
                      |+++|.+|..-  .+.......+.+|+.+|+. |....|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~-p~l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGI-PGLRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCC-CCCCCCc
Confidence            77777776431  1111122346789999986 5567785

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.13  E-value=2.6e-12  Score=136.22  Aligned_cols=171  Identities=34%  Similarity=0.513  Sum_probs=88.1

Q ss_pred             CEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCc
Q 002896          517 TFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRN  596 (869)
Q Consensus       517 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  596 (869)
                      ...|++.|++. .+|..+..+-.|+.+.+..|.+- .+|..+.++..|+++||+.|+++ ..|..+..++ |+.|.+++|
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            45566666665 34555555555666666666554 45555666666666666666655 3444444333 455555555


Q ss_pred             cccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhh
Q 002896          597 QLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPS  676 (869)
Q Consensus       597 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  676 (869)
                      +++ .+|+.++....|..||.+.|.+. .+|..++++.+|+.|.+..|++.. .|.++..| .|..||+|+|++ ..||-
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNki-s~iPv  228 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKI-SYLPV  228 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCce-eecch
Confidence            543 33444444455555555555554 334445555555555555555432 33333322 244455555555 34455


Q ss_pred             hhcCCCCCcEEeCCCCCCCC
Q 002896          677 QICNMRSLEMLNLSHNNLSD  696 (869)
Q Consensus       677 ~l~~l~~L~~L~Ls~N~l~~  696 (869)
                      .|.+|+.|++|-|.+|.|..
T Consensus       229 ~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  229 DFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhhhhhheeeeeccCCCCC
Confidence            55555555555555555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.10  E-value=2.1e-10  Score=127.68  Aligned_cols=102  Identities=35%  Similarity=0.508  Sum_probs=44.4

Q ss_pred             cccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCC-cCceeeccCcccCCCCCCccccccccceeecccc
Q 002896          135 FLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLS-SLNELALTSNFLKGSIPPSLGNLTNLAILYLHNN  213 (869)
Q Consensus       135 ~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  213 (869)
                      .++++.+.+... +..+..++.++.|++.+|.++ .+|...+.+. +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            355555544311 222333455555555555555 3344444442 5555555555544 22233444444444444444


Q ss_pred             CCCCCCCccccCCCCCCEEEccCCcCC
Q 002896          214 SLSGSIPSEIGNLKSLSSLALGNNKLC  240 (869)
Q Consensus       214 ~l~~~~~~~l~~l~~L~~L~L~~n~l~  240 (869)
                      .+. .+|...+..+.|+.|++++|+++
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~  199 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS  199 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc
Confidence            444 22222223344444444444443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.09  E-value=1.1e-10  Score=129.92  Aligned_cols=198  Identities=38%  Similarity=0.549  Sum_probs=139.5

Q ss_pred             EEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCC-CCCEEEcCCCCCCCCCCccccCCCcCceeeccCc
Q 002896          111 YLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLS-YIEALHLFKNQLSGPIPHEVGGLSSLNELALTSN  189 (869)
Q Consensus       111 ~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  189 (869)
                      .++++.+.+... +..+..++.++.|++.+|.++ .+|.....+. +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            577777766422 234555678888888888887 6777777774 8888999888887 55567888889999999998


Q ss_pred             ccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCC
Q 002896          190 FLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPS  269 (869)
Q Consensus       190 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  269 (869)
                      ++.. +|...+..++|+.|++++|.+. .+|........|+++.+++|... ..+..+.++.++..+.+.+|++.. .+.
T Consensus       174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~  249 (394)
T COG4886         174 DLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPE  249 (394)
T ss_pred             hhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccc
Confidence            8874 4444457888899999999888 55555555666888888888533 445556677777777777776652 245


Q ss_pred             CCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCC
Q 002896          270 EIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPS  317 (869)
Q Consensus       270 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~  317 (869)
                      .++.+++++.|++++|.++.. +. ++.+.+++.|++++|.+....|.
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             hhccccccceecccccccccc-cc-ccccCccCEEeccCccccccchh
Confidence            566667777777777777633 32 66677777777777776655443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.08  E-value=3.9e-12  Score=134.88  Aligned_cols=174  Identities=33%  Similarity=0.484  Sum_probs=102.4

Q ss_pred             CCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceee
Q 002896          106 ISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELA  185 (869)
Q Consensus       106 l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  185 (869)
                      +.--...||+.|.+. .+|..++.+..|+.+.|..|.+. .+|..+.++..|.+|||+.|+++ ..|..+..|+ |+.|-
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            344445666777666 56666666666666677666665 56666666666666666666665 4555555544 56666


Q ss_pred             ccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCC
Q 002896          186 LTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS  265 (869)
Q Consensus       186 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  265 (869)
                      +++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..+ .|..||++.|+++ 
T Consensus       150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-  224 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-  224 (722)
T ss_pred             EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-
Confidence            6666655 44555555555666666666555 34445555566666666555554 344444422 3555555555555 


Q ss_pred             CCCCCCCCCccCCccccCcccCC
Q 002896          266 SIPSEIGNLKSLSILELGENRLN  288 (869)
Q Consensus       266 ~~~~~l~~l~~L~~L~L~~n~~~  288 (869)
                      .+|..|.+++.|++|-|.+|.+.
T Consensus       225 ~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  225 YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             ecchhhhhhhhheeeeeccCCCC
Confidence            45555555555555555555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=2.7e-11  Score=124.89  Aligned_cols=210  Identities=25%  Similarity=0.239  Sum_probs=105.9

Q ss_pred             CCCCCCCEEECcCCcCccccC-ccccCCCCCCEEeCCCCcccccCC--cCcCCCCCCcEEEccCCCCCCCCCcCc-CCCC
Q 002896          487 RNLTNLIRLRLNRNHLTCNIS-ESFGIHPKLTFIDLSHNNFYGQIS--SDWGKCPNLGTFDVSVNNIIGSLPPEI-GDSS  562 (869)
Q Consensus       487 ~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~--~~~~~~~~L~~L~ls~n~l~~~~p~~l-~~l~  562 (869)
                      +++.+|+.+.++++.+..... .....+++++.||++.|-++...+  .....+|+|+.|+++.|++........ ..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            456677777777776554332 234456666677776665543211  122345566666666665542221111 1334


Q ss_pred             CCCEEEccCCcccccCCcccccCcccceeeccCcccccc-CcccccCCccccccccccccccccccccccCCCCCCeeeC
Q 002896          563 QLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQ-LPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNL  641 (869)
Q Consensus       563 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  641 (869)
                      +|+.|.++.|.++                        .. +......+++|+.|+|..|............+..|+.|||
T Consensus       198 ~lK~L~l~~CGls------------------------~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL  253 (505)
T KOG3207|consen  198 HLKQLVLNSCGLS------------------------WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL  253 (505)
T ss_pred             hhheEEeccCCCC------------------------HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence            4444444444443                        21 1112234455555555555422222233344455566666


Q ss_pred             cCCcCCccc-chhhhcccccccccccccccCCc-hhhh-----hcCCCCCcEEeCCCCCCCCCc-chhhhcCCCCcEEEc
Q 002896          642 STNQFIQEI-PIKLEKLIHLSELDLSHNFLGKE-IPSQ-----ICNMRSLEMLNLSHNNLSDFI-PRCFEEMNGLLYIDI  713 (869)
Q Consensus       642 s~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~-~p~~-----l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~l  713 (869)
                      ++|++.... -...+.++.|..|+++.+.+... +|+.     ...+++|++|+++.|++.... -..+..+.+|+.+.+
T Consensus       254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI  333 (505)
T ss_pred             cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence            665554322 12345556666666666665432 2222     345567777777777775431 133444556666666


Q ss_pred             cCCcccc
Q 002896          714 SYNELHG  720 (869)
Q Consensus       714 s~N~l~g  720 (869)
                      ..|+++-
T Consensus       334 ~~n~ln~  340 (505)
T KOG3207|consen  334 TLNYLNK  340 (505)
T ss_pred             ccccccc
Confidence            6666654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.99  E-value=8.4e-11  Score=115.03  Aligned_cols=133  Identities=25%  Similarity=0.276  Sum_probs=82.8

Q ss_pred             CcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhccccccccc
Q 002896          585 LSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELD  664 (869)
Q Consensus       585 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  664 (869)
                      +..|+.+|+++|.++. +.+...-.+.++.|++|+|.+...  +.+..+++|+.||||+|.++... .+=..+.+.+.|.
T Consensus       283 Wq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchhh-hhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhh-hhHhhhcCEeeee
Confidence            3445555555555432 233344556666666666666533  23666677777777777764432 2223456667777


Q ss_pred             ccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcc-hhhhcCCCCcEEEccCCcccccCC
Q 002896          665 LSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP-RCFEEMNGLLYIDISYNELHGPIP  723 (869)
Q Consensus       665 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~g~~p  723 (869)
                      |+.|.|...  ..++.+-+|..||+++|++..... ..+++++-|+.+.+.+||+.+.+.
T Consensus       359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            777776332  445666777788888887766532 567788888888888888887655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.99  E-value=2.9e-11  Score=121.38  Aligned_cols=184  Identities=25%  Similarity=0.306  Sum_probs=106.7

Q ss_pred             CCCCCcEEEccCCCCCCCCCcC----cCCCCCCCEEEccCCcccccC-------------CcccccCcccceeeccCccc
Q 002896          536 KCPNLGTFDVSVNNIIGSLPPE----IGDSSQLHVIDLSANHIIGKI-------------PSEIGKLSSLIKLILRRNQL  598 (869)
Q Consensus       536 ~~~~L~~L~ls~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~-------------p~~l~~l~~L~~L~L~~n~l  598 (869)
                      .+++|++++||+|.+...-++.    +.++..|+.|+|.+|.+.-.-             ....+.-+.|+.++..+|.+
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            4455555555555554332222    234555666666666543110             01122345666666666665


Q ss_pred             ccc----CcccccCCccccccccccccccc----cccccccCCCCCCeeeCcCCcCCcc----cchhhhccccccccccc
Q 002896          599 FGQ----LPSELGSLIQLEYLDLSSNRLSN----SIPRSLGNLVKLHYLNLSTNQFIQE----IPIKLEKLIHLSELDLS  666 (869)
Q Consensus       599 ~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls  666 (869)
                      ..-    +...|...+.|+.+.++.|.|..    .....|..+++|+.|||.+|-++..    +...+..+++|++|+++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            322    23345556677777777776532    2234567777888888888777633    23445666778888888


Q ss_pred             ccccCCchhhhh-----cCCCCCcEEeCCCCCCCCC----cchhhhcCCCCcEEEccCCccc
Q 002896          667 HNFLGKEIPSQI-----CNMRSLEMLNLSHNNLSDF----IPRCFEEMNGLLYIDISYNELH  719 (869)
Q Consensus       667 ~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~  719 (869)
                      +|.+.......|     ...|+|++|.+.+|.++..    +...+...+.|..|++++|.+.
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            887765543332     2357788888888877643    2334455677888888888773

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.97  E-value=4e-10  Score=106.85  Aligned_cols=106  Identities=31%  Similarity=0.368  Sum_probs=28.5

Q ss_pred             cccccccccccccccccccccc-CCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEe
Q 002896          610 IQLEYLDLSSNRLSNSIPRSLG-NLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLN  688 (869)
Q Consensus       610 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  688 (869)
                      ..+++|+|.+|.|+.+  +.++ .+.+|+.|||++|.++..  +.+..++.|++|++++|+|+...+.....+++|++|+
T Consensus        19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             cccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            3445555555555432  1233 345555555555555443  2345555666666666666443222223456666666


Q ss_pred             CCCCCCCCCcc-hhhhcCCCCcEEEccCCccc
Q 002896          689 LSHNNLSDFIP-RCFEEMNGLLYIDISYNELH  719 (869)
Q Consensus       689 Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~  719 (869)
                      +++|+|..... ..++.+++|+.|++.+||++
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            66666655322 44555666666666666664

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.95  E-value=6e-10  Score=132.05  Aligned_cols=131  Identities=25%  Similarity=0.315  Sum_probs=91.0

Q ss_pred             CCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCcc--CCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCc
Q 002896          105 NISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQ--FSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLN  182 (869)
Q Consensus       105 ~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~--~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  182 (869)
                      +....|...+-+|.+. .++... .+++|++|-+.+|.  +....+..|..++.|++|||++|.-.+.+|..++++-+||
T Consensus       521 ~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             chhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            3456677777777664 233332 23468888777775  4423334467788888888888777778888888888888


Q ss_pred             eeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCc
Q 002896          183 ELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNK  238 (869)
Q Consensus       183 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  238 (869)
                      +|+++++.+. .+|..++++..|.+|++..+.-...+|.....+++|++|.+....
T Consensus       599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            8888888877 677788888888888888776555555556667888888776543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.94  E-value=2.9e-11  Score=121.47  Aligned_cols=247  Identities=22%  Similarity=0.260  Sum_probs=128.6

Q ss_pred             CCCCCCCcEEeCCCCCCCCC----CCCCCCCCCcCCcccCCCcc---CCCCCCcc-------cCCCCCCCEEEcCCCCCC
Q 002896          103 IGNISKLKYLDLSSNSFSGT----IPPQIGNLSMLKFLYLSANQ---FSGRIPPQ-------IGHLSYIEALHLFKNQLS  168 (869)
Q Consensus       103 l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~---~~~~~p~~-------l~~l~~L~~L~L~~n~l~  168 (869)
                      +..+..+++++||+|.|...    +...+.+.++|+..++|+-.   ....+|..       +..+++|++||||.|.+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            33445566666666665422    33344555566666665431   22233332       234456666666666554


Q ss_pred             CCCCcc----ccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCC--
Q 002896          169 GPIPHE----VGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGS--  242 (869)
Q Consensus       169 ~~~p~~----~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--  242 (869)
                      ...+..    +..++.|++|.|.+|.+.-.-...++.  .|..|.  .+       ...+.-+.|+++....|++...  
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~ga  174 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN-------KKAASKPKLRVFICGRNRLENGGA  174 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH-------hccCCCcceEEEEeeccccccccH
Confidence            433332    234555555555555443111111110  011111  00       1122334566666666665432  


Q ss_pred             --cccccCCCCCCCEEEccCCCCCCC----CCCCCCCCccCCccccCcccCCcc----cCccccCCCCCCeeeccccccc
Q 002896          243 --IPLFLGNLTNLDTLYLRNNSFSSS----IPSEIGNLKSLSILELGENRLNGS----IPLSLGNLTNLDTLYLYTNSLS  312 (869)
Q Consensus       243 --~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~----~p~~l~~l~~L~~L~L~~n~~~  312 (869)
                        +...|...+.|+.+.++.|.+...    +...+..+++|++|||..|.++..    +...+..+++|+.|++++|.+.
T Consensus       175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence              223344556677777766655421    122356677777777777766532    2334556677778888777765


Q ss_pred             CCCCCcc-----cCCCCCCeEeccCCccccc----cCCCCcCccccceeeccCCcCC
Q 002896          313 GSIPSEI-----GNLKSLSGLELADNELSSS----IPHYLGNLTNLAAFYLYKNSLS  360 (869)
Q Consensus       313 ~~~p~~l-----~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~  360 (869)
                      ..-...+     ...|+|+.|.+.+|.++..    +.......+.|+.|+|+.|.+.
T Consensus       255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            4322222     2357788888888877642    2223445678888888888873

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.93  E-value=2.7e-10  Score=134.88  Aligned_cols=106  Identities=31%  Similarity=0.365  Sum_probs=67.4

Q ss_pred             CCcEEeCCCCC--CCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceee
Q 002896          108 KLKYLDLSSNS--FSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELA  185 (869)
Q Consensus       108 ~L~~L~Ls~n~--~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  185 (869)
                      .|++|-+.+|.  +....++.|..++.|++|||++|.--+.+|..++.|.+||+|+++++.+. .+|..++++..|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            56666666664  33222334566777777777776655667777777777777777777766 6667777777777777


Q ss_pred             ccCcccCCCCCCccccccccceeeccccC
Q 002896          186 LTSNFLKGSIPPSLGNLTNLAILYLHNNS  214 (869)
Q Consensus       186 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  214 (869)
                      +..+.-...+|.....+++|++|.+....
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccccccccccchhhhcccccEEEeeccc
Confidence            77665544445555557777777665543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.92  E-value=1.1e-09  Score=103.71  Aligned_cols=128  Identities=29%  Similarity=0.314  Sum_probs=54.2

Q ss_pred             cccCcccceeeccCccccccCccccc-CCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhh-hcccc
Q 002896          582 IGKLSSLIKLILRRNQLFGQLPSELG-SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIH  659 (869)
Q Consensus       582 l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~  659 (869)
                      +.+..++++|+|++|.+..+-  .++ .+.+|+.||+++|.++..  +.+..++.|+.|++++|+++... ..+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-C-HHHHHH-TT
T ss_pred             ccccccccccccccccccccc--chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccc-cchHHhCCc
Confidence            455668899999999997653  344 578999999999999865  36888999999999999997643 344 47899


Q ss_pred             cccccccccccCCch-hhhhcCCCCCcEEeCCCCCCCCCcc---hhhhcCCCCcEEEcc
Q 002896          660 LSELDLSHNFLGKEI-PSQICNMRSLEMLNLSHNNLSDFIP---RCFEEMNGLLYIDIS  714 (869)
Q Consensus       660 L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls  714 (869)
                      |++|++++|+|.... -..+..+++|++|+|.+|+++...-   ..+..+++|+.||-.
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            999999999996542 2567889999999999999986521   345778899988753

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=1.4e-10  Score=119.67  Aligned_cols=208  Identities=28%  Similarity=0.342  Sum_probs=99.3

Q ss_pred             CCCccCCccccCcccCCcccC-ccccCCCCCCeeecccccccCCCC--CcccCCCCCCeEeccCCccccccCCC-CcCcc
Q 002896          272 GNLKSLSILELGENRLNGSIP-LSLGNLTNLDTLYLYTNSLSGSIP--SEIGNLKSLSGLELADNELSSSIPHY-LGNLT  347 (869)
Q Consensus       272 ~~l~~L~~L~L~~n~~~~~~p-~~l~~l~~L~~L~L~~n~~~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~  347 (869)
                      .++++|+.+.|.+..+..... .....|++++.|+|+.|-+....+  .....+|+|+.|+++.|.+....... -..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            456777888887776642211 244567777777777776553211  22345666777777776654322111 11234


Q ss_pred             ccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccC
Q 002896          348 NLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLG  427 (869)
Q Consensus       348 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  427 (869)
                      +|+.|.++.|.++...                       +......+|+|+.|++..|.....-.....-+..|++|||+
T Consensus       198 ~lK~L~l~~CGls~k~-----------------------V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs  254 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKD-----------------------VQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS  254 (505)
T ss_pred             hhheEEeccCCCCHHH-----------------------HHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence            4444455444444211                       11112234445555555443211111222333445555555


Q ss_pred             CCcCcccc-cccccCCCCCCeEEccCCCCcccC-Ccc-----ccCCCCCcEEecCCCcCcC--CCCCcCCCCCCCEEECc
Q 002896          428 DNKLSNSI-SHSLGNLTHMTLLALYDNALSGVI-PEE-----LGNLVKLTMLTLSDNQLQG--SIPNLRNLTNLIRLRLN  498 (869)
Q Consensus       428 ~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~-~~~-----~~~l~~L~~L~Ls~n~l~~--~~~~l~~l~~L~~L~l~  498 (869)
                      +|.+-... ....+.++.|+.|+++.+.+...- |+.     ...+++|++|+++.|++..  .+..+..+++|+.|.+.
T Consensus       255 ~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~  334 (505)
T KOG3207|consen  255 NNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT  334 (505)
T ss_pred             CCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence            55443321 122345555555555555554431 111     2345667777777776642  22234444445555544


Q ss_pred             CCcC
Q 002896          499 RNHL  502 (869)
Q Consensus       499 ~n~l  502 (869)
                      .|.+
T Consensus       335 ~n~l  338 (505)
T KOG3207|consen  335 LNYL  338 (505)
T ss_pred             cccc
Confidence            4444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.84  E-value=6.9e-10  Score=108.73  Aligned_cols=134  Identities=27%  Similarity=0.318  Sum_probs=86.7

Q ss_pred             cccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCC
Q 002896          222 EIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNL  301 (869)
Q Consensus       222 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L  301 (869)
                      .+...+.|+++||++|.++ .+.++..-.+.++.|++++|.+...  +.+..+++|+.||+++|.++ .+..+-..+.+.
T Consensus       279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI  354 (490)
T ss_pred             ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence            3445567777888887776 5556666677777888887777633  23667777777777777765 344444566777


Q ss_pred             CeeecccccccCCCCCcccCCCCCCeEeccCCcccccc-CCCCcCccccceeeccCCcCCC
Q 002896          302 DTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSI-PHYLGNLTNLAAFYLYKNSLSG  361 (869)
Q Consensus       302 ~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~  361 (869)
                      ++|.|+.|.+...  +.++.+.+|..||+++|++.... -..++++|-|+.+.|.+|.+.+
T Consensus       355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            7777777766422  34566667777777777765432 2445666666666666666654

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.79  E-value=7.2e-09  Score=73.49  Aligned_cols=41  Identities=37%  Similarity=0.902  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC-CCCCCccCceeeC
Q 002896           35 TEEVHALLKWKTSLQNHDKGSLLPSWTLNNAT-KISPCAWFGIHCN   79 (869)
Q Consensus        35 ~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~~~-~~~~c~w~gv~c~   79 (869)
                      ++|++||++||+++..++ .+.+.+|+   .. ..+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~-~~~l~~W~---~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDP-SGVLSSWN---PSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC--CCCTT-----TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhccccc-CcccccCC---CcCCCCCeeeccEEeC
Confidence            689999999999998655 67899998   22 2799999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.77  E-value=1.2e-09  Score=121.60  Aligned_cols=196  Identities=33%  Similarity=0.393  Sum_probs=100.7

Q ss_pred             CCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCcccccccccee
Q 002896          129 NLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAIL  208 (869)
Q Consensus       129 ~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  208 (869)
                      .+..++.+++..|.+.. +-..+..+.+|..|++.+|.+.+. ...+..+++|++|++++|+|+...  .+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhh
Confidence            44555555566665552 223355566666666666666532 222555666666666666665432  24445556666


Q ss_pred             eccccCCCCCCCccccCCCCCCEEEccCCcCCCCcc-cccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccC
Q 002896          209 YLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP-LFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRL  287 (869)
Q Consensus       209 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~  287 (869)
                      ++++|.+...  ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+...  ..+..+..+..+++..|.+
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence            6666666532  224445666666666666653333 1 34555666666666655422  2233344444455555555


Q ss_pred             CcccCccccCCCC--CCeeecccccccCCCCCcccCCCCCCeEeccCCccc
Q 002896          288 NGSIPLSLGNLTN--LDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELS  336 (869)
Q Consensus       288 ~~~~p~~l~~l~~--L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~  336 (869)
                      +..-+  +..+..  |+.+++++|.+. ..+..+..+..+..+++.+|++.
T Consensus       221 ~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  221 SKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             eeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence            42211  111222  556666666554 22233444555555555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.75  E-value=1.8e-09  Score=120.21  Aligned_cols=57  Identities=32%  Similarity=0.436  Sum_probs=26.1

Q ss_pred             cccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCccc
Q 002896          660 LSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH  719 (869)
Q Consensus       660 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  719 (869)
                      |+.+++++|++. .+++.+..++.++.|++++|++...  ..+.....+..+....|++.
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence            455555555552 2223344455555555555555443  12233334444445555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.74  E-value=3.3e-09  Score=82.50  Aligned_cols=60  Identities=42%  Similarity=0.651  Sum_probs=37.9

Q ss_pred             ccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcc
Q 002896          659 HLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL  718 (869)
Q Consensus       659 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  718 (869)
                      +|++|++++|+++...++.|..+++|++|++++|+++...|..|..+++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455666666666555555666666666666666666666666666666666666666654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.69  E-value=6e-09  Score=81.06  Aligned_cols=60  Identities=38%  Similarity=0.514  Sum_probs=36.6

Q ss_pred             CCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCC
Q 002896          635 KLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNL  694 (869)
Q Consensus       635 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  694 (869)
                      +|++|++++|++....+..|.++++|++|++++|.++...|+.|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455666666665555555566666666666666666555556666666666666666653

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.58  E-value=2.4e-09  Score=116.92  Aligned_cols=129  Identities=29%  Similarity=0.268  Sum_probs=91.1

Q ss_pred             cccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccc
Q 002896          586 SSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDL  665 (869)
Q Consensus       586 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  665 (869)
                      -.|...+.+.|.+. .....+.-++.|+.|||++|+++...  .+..|+.|++|||++|.+.....-...++. |+.|+|
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence            34556666666664 23345556778888888888887543  677888888888888887655444445555 888888


Q ss_pred             cccccCCchhhhhcCCCCCcEEeCCCCCCCCCcc-hhhhcCCCCcEEEccCCcccc
Q 002896          666 SHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP-RCFEEMNGLLYIDISYNELHG  720 (869)
Q Consensus       666 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~g  720 (869)
                      ++|.++..  ..+.++.+|+.||+++|-|.+... ..+..+.+|..|++.+||+-|
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            88888654  346678888888888888877533 334556678888888888765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.43  E-value=1.4e-08  Score=111.24  Aligned_cols=199  Identities=29%  Similarity=0.342  Sum_probs=132.0

Q ss_pred             CCCCcEEEccCCCCCCCC-CcCcCCCCCCCEEEccCCcccccCCcccccC-cccceeeccCcccc----------ccCcc
Q 002896          537 CPNLGTFDVSVNNIIGSL-PPEIGDSSQLHVIDLSANHIIGKIPSEIGKL-SSLIKLILRRNQLF----------GQLPS  604 (869)
Q Consensus       537 ~~~L~~L~ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~----------~~~~~  604 (869)
                      +++++.+.+-.-.-.+.. |-.+..+.+|+.|.+.++.+...  ..+..+ ..|++|. .+|.+.          |.+..
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~n  159 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISN  159 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhh-hhccHHHHHHHHHHhcccccc
Confidence            344445544333322322 66677888999999999988631  111111 2233332 222221          11111


Q ss_pred             cccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhh-hcCCCC
Q 002896          605 ELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQ-ICNMRS  683 (869)
Q Consensus       605 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~  683 (869)
                      .+ ....|...+.++|.+. ....++.-++.|+.|||++|+++...  .+..++.|++|||++|.+.. +|.. ...+ .
T Consensus       160 s~-~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~  233 (1096)
T KOG1859|consen  160 SP-VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-K  233 (1096)
T ss_pred             ch-hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccccchhhh-h
Confidence            11 2346888999999997 55668888999999999999997764  78899999999999999954 4432 2233 4


Q ss_pred             CcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCC--CccccccchhhhcCCCCCCCCC
Q 002896          684 LEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPN--STAFSDALMEALQGNEGLCGDI  746 (869)
Q Consensus       684 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~--~~~~~~~~~~~~~gn~~lc~~~  746 (869)
                      |+.|++++|.++..  ..+.++.+|+.||++||-+.+.-.-  .|.+.....-..+|||.-|.+|
T Consensus       234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~  296 (1096)
T KOG1859|consen  234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW  296 (1096)
T ss_pred             heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence            99999999999876  5678899999999999998874321  1222333333478999988654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.25  E-value=7.9e-08  Score=83.76  Aligned_cols=84  Identities=25%  Similarity=0.347  Sum_probs=36.8

Q ss_pred             cccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCC
Q 002896          611 QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLS  690 (869)
Q Consensus       611 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  690 (869)
                      .|+..+|++|.+....+..-...+.++.|+|++|.+ ..+|.++..++.|+.|+++.|.+ ...|+.+..+.+|-.||..
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~lNl~~N~l-~~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSLNLRFNPL-NAEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhcccccCcc-ccchHHHHHHHhHHHhcCC
Confidence            344444444444422222222223444455555544 23444455555555555555555 2333334445555555555


Q ss_pred             CCCCCC
Q 002896          691 HNNLSD  696 (869)
Q Consensus       691 ~N~l~~  696 (869)
                      +|.+..
T Consensus       132 ~na~~e  137 (177)
T KOG4579|consen  132 ENARAE  137 (177)
T ss_pred             CCcccc
Confidence            554444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=6.1e-07  Score=88.53  Aligned_cols=63  Identities=17%  Similarity=0.242  Sum_probs=31.0

Q ss_pred             CCCCeEeccCCcccccc-CCCCcCccccceeeccCCcCCCCC-ccccCCCCCCCEEEccCCcCCC
Q 002896          323 KSLSGLELADNELSSSI-PHYLGNLTNLAAFYLYKNSLSGSI-PSEIGNLKSLSNLDLSENKLSG  385 (869)
Q Consensus       323 ~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~  385 (869)
                      |++..+-+..|.+.... ...+..++.+..|+|+.+++..-. -+++..++.|..|.++++.+..
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            44444555555443221 123344455556666666654311 1234556666666666665543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=1.2e-07  Score=93.51  Aligned_cols=85  Identities=20%  Similarity=0.205  Sum_probs=49.9

Q ss_pred             CCCEEeCCCCccccc-CCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccC--CcccccCccccee
Q 002896          515 KLTFIDLSHNNFYGQ-ISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKI--PSEIGKLSSLIKL  591 (869)
Q Consensus       515 ~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L  591 (869)
                      .|+++|+++..++.. .-..+..|.+|+.|.+.++++.+.+-..+..-.+|+.|+++.+.-....  .--+.+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            578888887766532 1123456777777777777777666666666667777777766322111  1123455555555


Q ss_pred             eccCcccc
Q 002896          592 ILRRNQLF  599 (869)
Q Consensus       592 ~L~~n~l~  599 (869)
                      +|+.|.++
T Consensus       266 NlsWc~l~  273 (419)
T KOG2120|consen  266 NLSWCFLF  273 (419)
T ss_pred             CchHhhcc
Confidence            55555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=2e-06  Score=85.00  Aligned_cols=81  Identities=19%  Similarity=0.140  Sum_probs=53.6

Q ss_pred             CCCCeeeCcCCcCCccc-chhhhcccccccccccccccCCch-hhhhcCCCCCcEEeCCCCCCCCCcchh------hhcC
Q 002896          634 VKLHYLNLSTNQFIQEI-PIKLEKLIHLSELDLSHNFLGKEI-PSQICNMRSLEMLNLSHNNLSDFIPRC------FEEM  705 (869)
Q Consensus       634 ~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~------l~~l  705 (869)
                      +++..+.+..|.+.... ......++.+..|+|+.|+|.... -+++..+++|..|.+++|++.......      ++.+
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL  278 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL  278 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence            46667777777665433 234566777778888888884432 366778888888888888887653321      3566


Q ss_pred             CCCcEEEcc
Q 002896          706 NGLLYIDIS  714 (869)
Q Consensus       706 ~~L~~L~ls  714 (869)
                      ++++.|+=|
T Consensus       279 ~~v~vLNGs  287 (418)
T KOG2982|consen  279 TKVQVLNGS  287 (418)
T ss_pred             cceEEecCc
Confidence            667766544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=1.5e-07  Score=92.80  Aligned_cols=58  Identities=19%  Similarity=0.213  Sum_probs=39.0

Q ss_pred             cccEEEccCCccccc-cChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCC
Q 002896          396 NLAILYLHSNTLLGS-IPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDN  453 (869)
Q Consensus       396 ~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n  453 (869)
                      .|+++||+...++.. +-..+..|.+|+.|.+.++++.+.+...++.-.+|+.++++.+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~  244 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC  244 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence            577777777766532 2234566777777777777777777766777777777777665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.86  E-value=1.5e-06  Score=75.87  Aligned_cols=107  Identities=28%  Similarity=0.319  Sum_probs=72.6

Q ss_pred             CCEEEccCCcccccCCc---ccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeee
Q 002896          564 LHVIDLSANHIIGKIPS---EIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLN  640 (869)
Q Consensus       564 L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  640 (869)
                      +-.+||++|.+. .+++   .+.....|+..+|++|.+....+..-..++.++.|++++|.++ .+|..+..++.|+.|+
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            344556666553 2222   2344556666677777776554444445667888888888888 5677788888999999


Q ss_pred             CcCCcCCcccchhhhcccccccccccccccCCc
Q 002896          641 LSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKE  673 (869)
Q Consensus       641 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  673 (869)
                      ++.|++... |..+..+.+|-.|+..+|.+...
T Consensus       107 l~~N~l~~~-p~vi~~L~~l~~Lds~~na~~ei  138 (177)
T KOG4579|consen  107 LRFNPLNAE-PRVIAPLIKLDMLDSPENARAEI  138 (177)
T ss_pred             cccCccccc-hHHHHHHHhHHHhcCCCCccccC
Confidence            999888544 45555688888888888888433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.82  E-value=1.1e-06  Score=85.75  Aligned_cols=85  Identities=22%  Similarity=0.321  Sum_probs=53.1

Q ss_pred             CCEEEEeCCCCCcccc----cCCcCCCCCCCCcEEeCCCCCCCCC----CC-------CCCCCCCcCCcccCCCccCCCC
Q 002896           82 GRVNSINLTNVNQIFG----IIPPQIGNISKLKYLDLSSNSFSGT----IP-------PQIGNLSMLKFLYLSANQFSGR  146 (869)
Q Consensus        82 ~~v~~l~l~~~~~l~~----~~~~~l~~l~~L~~L~Ls~n~~~~~----~p-------~~l~~l~~L~~L~Ls~n~~~~~  146 (869)
                      ..++.++|+|+. +..    .+...+.+-++|+..++++- ++|.    ++       .++-+|++|+..+||+|.|...
T Consensus        30 d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          30 DELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             cceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            356778887765 432    23345566677777777653 2222    22       3456778888888888877665


Q ss_pred             CCcc----cCCCCCCCEEEcCCCCCC
Q 002896          147 IPPQ----IGHLSYIEALHLFKNQLS  168 (869)
Q Consensus       147 ~p~~----l~~l~~L~~L~L~~n~l~  168 (869)
                      .|..    +++-+.|.+|.+++|.+.
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCC
Confidence            5543    355677777877777654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.72  E-value=4.6e-05  Score=81.48  Aligned_cols=137  Identities=18%  Similarity=0.196  Sum_probs=72.8

Q ss_pred             cCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCcccc
Q 002896          534 WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLE  613 (869)
Q Consensus       534 ~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  613 (869)
                      +..|.+++.|++++|.++. +|.   -.++|++|++++|.-...+|..+.  ++|+.|++++|.....+|      .+|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP------~sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP------ESVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc------cccc
Confidence            3456788888888886653 341   234688888887654445565442  577777777773322333      2455


Q ss_pred             ccccccccccccccccccCC-CCCCeeeCcCCcCC--cccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCC
Q 002896          614 YLDLSSNRLSNSIPRSLGNL-VKLHYLNLSTNQFI--QEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLS  690 (869)
Q Consensus       614 ~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  690 (869)
                      .|+++.+....     +..+ ++|+.|.+.+++..  ..+|..  --++|++|++++|... ..|+.+.  .+|+.|+++
T Consensus       116 ~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls  185 (426)
T PRK15386        116 SLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH  185 (426)
T ss_pred             eEEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence            56665554321     1112 24556666433211  111110  1146777777766653 2333222  466777766


Q ss_pred             CC
Q 002896          691 HN  692 (869)
Q Consensus       691 ~N  692 (869)
                      .|
T Consensus       186 ~n  187 (426)
T PRK15386        186 IE  187 (426)
T ss_pred             cc
Confidence            65

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.70  E-value=3.1e-05  Score=54.92  Aligned_cols=37  Identities=49%  Similarity=0.788  Sum_probs=17.8

Q ss_pred             ccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCC
Q 002896          659 HLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD  696 (869)
Q Consensus       659 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  696 (869)
                      +|++|++++|+|+ .+|..++++++|+.|++++|+++.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            3455555555553 233345555555555555555553

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.68  E-value=0.00013  Score=78.18  Aligned_cols=15  Identities=13%  Similarity=0.109  Sum_probs=7.9

Q ss_pred             CCCCcEEecCCCcCc
Q 002896          466 LVKLTMLTLSDNQLQ  480 (869)
Q Consensus       466 l~~L~~L~Ls~n~l~  480 (869)
                      +..++.|++++|.+.
T Consensus        51 ~~~l~~L~Is~c~L~   65 (426)
T PRK15386         51 ARASGRLYIKDCDIE   65 (426)
T ss_pred             hcCCCEEEeCCCCCc
Confidence            455555555555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.68  E-value=5.7e-06  Score=80.79  Aligned_cols=40  Identities=35%  Similarity=0.508  Sum_probs=21.2

Q ss_pred             ccCCCCCcEEecCCCcCcCCCC-----CcCCCCCCCEEECcCCcC
Q 002896          463 LGNLVKLTMLTLSDNQLQGSIP-----NLRNLTNLIRLRLNRNHL  502 (869)
Q Consensus       463 ~~~l~~L~~L~Ls~n~l~~~~~-----~l~~l~~L~~L~l~~n~l  502 (869)
                      +..|++|+.++||+|-+....|     .++.-+.|++|.+++|.+
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            3445555555555555544333     234555666666666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.52  E-value=7.4e-05  Score=53.00  Aligned_cols=36  Identities=39%  Similarity=0.563  Sum_probs=17.1

Q ss_pred             CCCeeeCcCCcCCcccchhhhcccccccccccccccC
Q 002896          635 KLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLG  671 (869)
Q Consensus       635 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  671 (869)
                      +|++|++++|+++. +|..++++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            44555555555542 3334555555555555555553

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.38  E-value=0.00021  Score=67.26  Aligned_cols=106  Identities=25%  Similarity=0.225  Sum_probs=72.8

Q ss_pred             CccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCch-hhhhcCCCCCcEE
Q 002896          609 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI-PSQICNMRSLEML  687 (869)
Q Consensus       609 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L  687 (869)
                      ..+...+||++|.+...  ..|..++.|.+|.|++|+|+..-|.--.-++.|+.|.|.+|.|.... -+-+..+|.|++|
T Consensus        41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            34566778888877533  36777788888888888887777766666677888888888774332 1335677888888


Q ss_pred             eCCCCCCCCCcc---hhhhcCCCCcEEEccCC
Q 002896          688 NLSHNNLSDFIP---RCFEEMNGLLYIDISYN  716 (869)
Q Consensus       688 ~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~N  716 (869)
                      .+-+|+.+..--   -.+..+++|+.||++.-
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            888887765421   23456677888877654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.38  E-value=7.2e-05  Score=87.14  Aligned_cols=106  Identities=23%  Similarity=0.357  Sum_probs=52.0

Q ss_pred             CcCCcccCCCcc-CCCCCCcccC-CCCCCCEEEcCCCCCCCC-CCccccCCCcCceeeccCcccCCCCCCccccccccce
Q 002896          131 SMLKFLYLSANQ-FSGRIPPQIG-HLSYIEALHLFKNQLSGP-IPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAI  207 (869)
Q Consensus       131 ~~L~~L~Ls~n~-~~~~~p~~l~-~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  207 (869)
                      .+|++||+++.. +...-|..++ .++.|+.|.+++-.+... .-....++++|+.||+++++++..  ..++++++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            356667776654 2223333443 356666666665444321 112234556666666666655533  44555555555


Q ss_pred             eeccccCCCC-CCCccccCCCCCCEEEccCCc
Q 002896          208 LYLHNNSLSG-SIPSEIGNLKSLSSLALGNNK  238 (869)
Q Consensus       208 L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~  238 (869)
                      |.+.+=.+.. ..-..+.++++|++||+|...
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            5555443332 111234445555555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.30  E-value=7.6e-05  Score=86.95  Aligned_cols=111  Identities=23%  Similarity=0.275  Sum_probs=49.5

Q ss_pred             CcccceeeccCcccccc-CcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCc-ccchhhhccccccc
Q 002896          585 LSSLIKLILRRNQLFGQ-LPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ-EIPIKLEKLIHLSE  662 (869)
Q Consensus       585 l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~  662 (869)
                      +|+|+.|.+++=.+... ....+.++++|..||+|+.+++..  ..++++++|+.|.+.+=.+.. ..-..+.+|++|++
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            44444444444333211 122233455555555555555433  344555555555554443332 22233445555555


Q ss_pred             ccccccccCCch--h----hhhcCCCCCcEEeCCCCCCCCC
Q 002896          663 LDLSHNFLGKEI--P----SQICNMRSLEMLNLSHNNLSDF  697 (869)
Q Consensus       663 L~Ls~N~l~~~~--p----~~l~~l~~L~~L~Ls~N~l~~~  697 (869)
                      ||+|..+.....  .    +.-..+|.|+.||.|+..+.+.
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            555554432211  1    1222355666666665555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.17  E-value=0.00089  Score=61.13  Aligned_cols=14  Identities=14%  Similarity=0.598  Sum_probs=4.8

Q ss_pred             CcCCCCCCcEEEcc
Q 002896          533 DWGKCPNLGTFDVS  546 (869)
Q Consensus       533 ~~~~~~~L~~L~ls  546 (869)
                      .|..+++|+.+.+.
T Consensus        30 ~F~~~~~l~~i~~~   43 (129)
T PF13306_consen   30 AFSNCTSLKSINFP   43 (129)
T ss_dssp             TTTT-TT-SEEEES
T ss_pred             hccccccccccccc
Confidence            33334344444433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.14  E-value=0.00058  Score=62.37  Aligned_cols=100  Identities=15%  Similarity=0.256  Sum_probs=35.6

Q ss_pred             ccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCC
Q 002896          604 SELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRS  683 (869)
Q Consensus       604 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  683 (869)
                      ..|.++++|+.+++.++ +......+|.++++|+.+.+.+ .+.......|..+++|+.+++..+ +.......|.+. .
T Consensus        29 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~  104 (129)
T PF13306_consen   29 NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-N  104 (129)
T ss_dssp             TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T
T ss_pred             hhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-C
Confidence            33444444555554443 3333334455555555555543 322222334444555555555443 333444445554 5


Q ss_pred             CcEEeCCCCCCCCCcchhhhcCCCC
Q 002896          684 LEMLNLSHNNLSDFIPRCFEEMNGL  708 (869)
Q Consensus       684 L~~L~Ls~N~l~~~~p~~l~~l~~L  708 (869)
                      |+.+.+.. .+..+....|.++++|
T Consensus       105 l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  105 LKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             --EEE-TT-B-SS----GGG-----
T ss_pred             ceEEEECC-CccEECCccccccccC
Confidence            55555554 3444444555554444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.06  E-value=0.001  Score=62.83  Aligned_cols=100  Identities=24%  Similarity=0.284  Sum_probs=51.1

Q ss_pred             CccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcC--CCCCcCCCCCCCEEECcC
Q 002896          422 FELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQG--SIPNLRNLTNLIRLRLNR  499 (869)
Q Consensus       422 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~l~~l~~L~~L~l~~  499 (869)
                      ..+|+++|.+..  ...|..++.|..|.+.+|+++..-|.--.-+++|+.|.+.+|.+..  .+..+..|+.|++|.+-+
T Consensus        45 d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   45 DAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             ceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            344444444432  1224445555555555555555444444445556666666666543  223455666667776666


Q ss_pred             CcCccccCc---cccCCCCCCEEeCCC
Q 002896          500 NHLTCNISE---SFGIHPKLTFIDLSH  523 (869)
Q Consensus       500 n~l~~~~~~---~~~~~~~L~~L~ls~  523 (869)
                      |+++.....   .+..+|+|+.||+..
T Consensus       123 Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  123 NPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CchhcccCceeEEEEecCcceEeehhh
Confidence            665433211   234456666666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.83  E-value=0.00074  Score=66.64  Aligned_cols=102  Identities=25%  Similarity=0.315  Sum_probs=51.7

Q ss_pred             ccccccccccccccccccccccCCCCCCeeeCcCC--cCCcccchhhhcccccccccccccccCCc-hhhhhcCCCCCcE
Q 002896          610 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN--QFIQEIPIKLEKLIHLSELDLSHNFLGKE-IPSQICNMRSLEM  686 (869)
Q Consensus       610 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~  686 (869)
                      ..|+.|.+.+..++..  ..|..+++|+.|++|.|  +..+..+.....+++|++|+++.|++... --..+..+.+|..
T Consensus        43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            3444444444444322  23445556666666666  44444444444556666666666666321 0112334555666


Q ss_pred             EeCCCCCCCCCc---chhhhcCCCCcEEEc
Q 002896          687 LNLSHNNLSDFI---PRCFEEMNGLLYIDI  713 (869)
Q Consensus       687 L~Ls~N~l~~~~---p~~l~~l~~L~~L~l  713 (869)
                      ||+.+|.-+...   ...|.-+++|+++|-
T Consensus       121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhcccCCccccccHHHHHHHHhhhhccccc
Confidence            777766665532   133445566666643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.74  E-value=0.00075  Score=66.61  Aligned_cols=71  Identities=21%  Similarity=0.252  Sum_probs=37.9

Q ss_pred             cccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCc--cCCCCCCcccCCCCCCCEEEcCCCCCC
Q 002896           96 FGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSAN--QFSGRIPPQIGHLSYIEALHLFKNQLS  168 (869)
Q Consensus        96 ~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n--~~~~~~p~~l~~l~~L~~L~L~~n~l~  168 (869)
                      .|.+....-.+..|+.|++.+..++..  ..+-.|++|++|.+|.|  ++.+.++.-...+++|++|++++|.+.
T Consensus        32 ~g~~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   32 AGKLGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             CCCcccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            334444444555566666555544311  23445566777777777  444444444444566666666666554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.71  E-value=4.6e-05  Score=79.34  Aligned_cols=106  Identities=19%  Similarity=0.083  Sum_probs=54.6

Q ss_pred             CCCeeecccccccCCCC--CcccCCCCCCeEeccCCccccc-cCCCC-cCccccceeeccCC-cCCCCCcc-ccCCCCCC
Q 002896          300 NLDTLYLYTNSLSGSIP--SEIGNLKSLSGLELADNELSSS-IPHYL-GNLTNLAAFYLYKN-SLSGSIPS-EIGNLKSL  373 (869)
Q Consensus       300 ~L~~L~L~~n~~~~~~p--~~l~~l~~L~~L~Ls~n~l~~~-~~~~l-~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L  373 (869)
                      .|+.|.+.++.-.+.-+  ....++++++.|++.++..... .-..+ ..+++|+.+++..| .++...-. -...|++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            57778887775443322  2245678888887777652211 11111 23566777777663 33322222 22357777


Q ss_pred             CEEEccCC-cCCCCC-CCCCCCCCcccEEEccCC
Q 002896          374 SNLDLSEN-KLSGSI-PHSLGNLTNLAILYLHSN  405 (869)
Q Consensus       374 ~~L~Ls~n-~l~~~~-~~~l~~l~~L~~L~L~~n  405 (869)
                      ++|+++.| .+++.. ...+.++..++.+.+.+|
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC  252 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC  252 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence            77777777 344311 112234444555544444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.66  E-value=9.9e-05  Score=76.91  Aligned_cols=38  Identities=24%  Similarity=0.172  Sum_probs=20.4

Q ss_pred             ccccccccccccccC-CchhhhhcCCCCCcEEeCCCCCC
Q 002896          657 LIHLSELDLSHNFLG-KEIPSQICNMRSLEMLNLSHNNL  694 (869)
Q Consensus       657 l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l  694 (869)
                      +..|..+.|+++... ...-+.+..+++||.+++-.++-
T Consensus       400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            344555666665542 22334455566777776666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.08  E-value=0.0012  Score=65.35  Aligned_cols=100  Identities=23%  Similarity=0.221  Sum_probs=62.5

Q ss_pred             CccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchh-hhhcCCCCCcEE
Q 002896          609 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIP-SQICNMRSLEML  687 (869)
Q Consensus       609 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L  687 (869)
                      +.+.+.|++.+|.++++  .....++.|+.|.||-|+++..-|  +..++.|++|+|..|.|..... .-+.++|+|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            44556666666666543  234566777777777777765433  6677777777777777754432 345677777777


Q ss_pred             eCCCCCCCCCcch-----hhhcCCCCcEEE
Q 002896          688 NLSHNNLSDFIPR-----CFEEMNGLLYID  712 (869)
Q Consensus       688 ~Ls~N~l~~~~p~-----~l~~l~~L~~L~  712 (869)
                      -|..|.=.|.-+.     .+.-+++|++||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            7777776665443     244566666664

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.01  E-value=0.00058  Score=78.37  Aligned_cols=35  Identities=23%  Similarity=0.107  Sum_probs=17.3

Q ss_pred             CCcCCcccCCCccCCCC--CCcccCCCCCCCEEEcCC
Q 002896          130 LSMLKFLYLSANQFSGR--IPPQIGHLSYIEALHLFK  164 (869)
Q Consensus       130 l~~L~~L~Ls~n~~~~~--~p~~l~~l~~L~~L~L~~  164 (869)
                      ++.|+.|.+.++.-...  +-.....+++|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            45566666655542222  122334555666666655

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.48  E-value=0.0015  Score=64.52  Aligned_cols=56  Identities=21%  Similarity=0.234  Sum_probs=22.7

Q ss_pred             CCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccc
Q 002896          539 NLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL  598 (869)
Q Consensus       539 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  598 (869)
                      +.+.|++.++.++++  .....++.|++|.||-|+++..-  .+..|++|++|+|+.|.+
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I   75 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCI   75 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccc
Confidence            334444444444322  11223444444444444444322  133444444444444443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.11  E-value=0.00059  Score=76.14  Aligned_cols=87  Identities=26%  Similarity=0.272  Sum_probs=45.2

Q ss_pred             CCCCCeeeCcCCcCCccc----chhhhcccc-cccccccccccCCc----hhhhhcCC-CCCcEEeCCCCCCCCCcc---
Q 002896          633 LVKLHYLNLSTNQFIQEI----PIKLEKLIH-LSELDLSHNFLGKE----IPSQICNM-RSLEMLNLSHNNLSDFIP---  699 (869)
Q Consensus       633 l~~L~~L~Ls~N~l~~~~----p~~l~~l~~-L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~~p---  699 (869)
                      ..++++|++++|.++...    ...+...++ +..|++.+|.+...    ....+..+ ..++.++++.|.++..-.   
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            455566666666554221    112333344 55566666666433    22333444 556666666666665433   


Q ss_pred             -hhhhcCCCCcEEEccCCccc
Q 002896          700 -RCFEEMNGLLYIDISYNELH  719 (869)
Q Consensus       700 -~~l~~l~~L~~L~ls~N~l~  719 (869)
                       ..+..+..++.+.+++|++.
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHhhhHHHHHhhcccCccc
Confidence             33344456666666766664

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.94  E-value=0.0016  Score=74.84  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=17.3

Q ss_pred             ccEEEccCCccccccC-hhhhC-CCCCCccccCCCcC
Q 002896          397 LAILYLHSNTLLGSIP-REIGN-LKSLFELQLGDNKL  431 (869)
Q Consensus       397 L~~L~L~~n~l~~~~~-~~~~~-l~~L~~L~Ls~n~l  431 (869)
                      ++.|+++.+.....-. ..... +..+..+++.++..
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            6666666665432111 11111 55566676666544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.70  E-value=0.00057  Score=76.29  Aligned_cols=188  Identities=27%  Similarity=0.271  Sum_probs=101.2

Q ss_pred             CCCEEECcCCcCccccC----ccccCCCCCCEEeCCCCcccccCCc----CcCCC-CCCcEEEccCCCCCCCCCcCcCCC
Q 002896          491 NLIRLRLNRNHLTCNIS----ESFGIHPKLTFIDLSHNNFYGQISS----DWGKC-PNLGTFDVSVNNIIGSLPPEIGDS  561 (869)
Q Consensus       491 ~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~ls~n~l~~~~~~----~~~~~-~~L~~L~ls~n~l~~~~p~~l~~l  561 (869)
                      .+..+.+.+|.+.....    ..+...+.|+.|+++.|.+.+.-..    .+... ..+++|++..|.+++..-      
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~------  161 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGA------  161 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccch------
Confidence            36677777777654322    2234455666666666666422111    11111 334444444444433211      


Q ss_pred             CCCCEEEccCCcccccCCcccccCcccceeeccCccccc----cCcc----cccCCcccccccccccccccc----cccc
Q 002896          562 SQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFG----QLPS----ELGSLIQLEYLDLSSNRLSNS----IPRS  629 (869)
Q Consensus       562 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~----~~~~----~~~~l~~L~~L~Ls~n~l~~~----~~~~  629 (869)
                                    +.+...+.....++.++++.|.+..    .++.    .+....++++|++++|.++..    ....
T Consensus       162 --------------~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~  227 (478)
T KOG4308|consen  162 --------------APLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEV  227 (478)
T ss_pred             --------------HHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHH
Confidence                          1122233334455555555554410    1112    223466777778877776531    1123


Q ss_pred             ccCCCC-CCeeeCcCCcCCcc----cchhhhcc-cccccccccccccCCch----hhhhcCCCCCcEEeCCCCCCCCCc
Q 002896          630 LGNLVK-LHYLNLSTNQFIQE----IPIKLEKL-IHLSELDLSHNFLGKEI----PSQICNMRSLEMLNLSHNNLSDFI  698 (869)
Q Consensus       630 ~~~l~~-L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~~  698 (869)
                      +...++ +..|++++|++...    ....+..+ ..+++++++.|.|+...    .+.+..++.+++|.+++|.+....
T Consensus       228 l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~  306 (478)
T KOG4308|consen  228 LASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG  306 (478)
T ss_pred             HhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence            444455 66688888887543    22334444 56788888888887653    455567778888999998887653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.37  E-value=0.0096  Score=35.00  Aligned_cols=12  Identities=42%  Similarity=0.728  Sum_probs=5.0

Q ss_pred             CCcccCCCccCC
Q 002896          133 LKFLYLSANQFS  144 (869)
Q Consensus       133 L~~L~Ls~n~~~  144 (869)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.18  E-value=0.016  Score=34.07  Aligned_cols=9  Identities=67%  Similarity=0.575  Sum_probs=3.3

Q ss_pred             ccccccccc
Q 002896          662 ELDLSHNFL  670 (869)
Q Consensus       662 ~L~Ls~N~l  670 (869)
                      +|||++|++
T Consensus         4 ~Ldls~n~l   12 (22)
T PF00560_consen    4 YLDLSGNNL   12 (22)
T ss_dssp             EEEETSSEE
T ss_pred             EEECCCCcC
Confidence            333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=91.78  E-value=0.017  Score=53.52  Aligned_cols=49  Identities=22%  Similarity=0.283  Sum_probs=42.3

Q ss_pred             cCcCHHH-HHHHhcCCCcccccchh--h-------------hhhhhhhhhHHHHhcc-----cccccccc
Q 002896          818 GKIVYEE-IIRQRMVLMMSTALEKV--D-------------KEVYTKLIYLLEKSLQ-----SRNFIRHS  866 (869)
Q Consensus       818 ~~isy~~-~~~a~~~~~~~~~Le~~--~-------------~~i~~~i~~~~~~s~~-----s~~fl~~~  866 (869)
                      +||+|+. .|+.|+..++.|.||+.  +             ..+.++|.++|++|++     |++|++.+
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~   70 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSE   70 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHT
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeeccccccc
Confidence            5789988 78999999999999999  5             5789999999999999     99998764

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.34  E-value=0.0068  Score=58.52  Aligned_cols=88  Identities=22%  Similarity=0.173  Sum_probs=64.0

Q ss_pred             CCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcC
Q 002896          102 QIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSL  181 (869)
Q Consensus       102 ~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  181 (869)
                      .+..+...+.||++.|.+. .+-..|+-++.|..||++.|.+. ..|..++.+..++++++..|..+ ..|.+++..+++
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            4666777888888888765 34455667778888888888776 67777777777777777777766 566777777777


Q ss_pred             ceeeccCcccC
Q 002896          182 NELALTSNFLK  192 (869)
Q Consensus       182 ~~L~L~~n~l~  192 (869)
                      +++++..|.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            77777766543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.60  E-value=0.32  Score=29.83  Aligned_cols=23  Identities=39%  Similarity=0.655  Sum_probs=15.4

Q ss_pred             CCCCcEEeCCCCCCCCCcchhhh
Q 002896          681 MRSLEMLNLSHNNLSDFIPRCFE  703 (869)
Q Consensus       681 l~~L~~L~Ls~N~l~~~~p~~l~  703 (869)
                      +++|++|+|++|+|+.+.+..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35677777777777776555543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.60  E-value=0.32  Score=29.83  Aligned_cols=23  Identities=39%  Similarity=0.655  Sum_probs=15.4

Q ss_pred             CCCCcEEeCCCCCCCCCcchhhh
Q 002896          681 MRSLEMLNLSHNNLSDFIPRCFE  703 (869)
Q Consensus       681 l~~L~~L~Ls~N~l~~~~p~~l~  703 (869)
                      +++|++|+|++|+|+.+.+..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35677777777777776555543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.61  E-value=0.025  Score=54.74  Aligned_cols=86  Identities=23%  Similarity=0.245  Sum_probs=59.8

Q ss_pred             cCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcE
Q 002896          607 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEM  686 (869)
Q Consensus       607 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  686 (869)
                      ......+.||++.|++.. .-..|+-++.|..||++.|++ ...|..++++..+..+++..|.. ...|.+++..+.+++
T Consensus        39 ~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHPKK  115 (326)
T ss_pred             hccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccch-hhCCccccccCCcch
Confidence            345566777777777653 223566667777788887775 45677777777777788777777 556777777777777


Q ss_pred             EeCCCCCCC
Q 002896          687 LNLSHNNLS  695 (869)
Q Consensus       687 L~Ls~N~l~  695 (869)
                      +++-.|.+.
T Consensus       116 ~e~k~~~~~  124 (326)
T KOG0473|consen  116 NEQKKTEFF  124 (326)
T ss_pred             hhhccCcch
Confidence            777777654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=86.03  E-value=0.42  Score=25.96  Aligned_cols=12  Identities=50%  Similarity=0.733  Sum_probs=4.0

Q ss_pred             CCcEEeCCCCCC
Q 002896          683 SLEMLNLSHNNL  694 (869)
Q Consensus       683 ~L~~L~Ls~N~l  694 (869)
                      +|+.|+|++|++
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            344444444443

...

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=82.71  E-value=0.38  Score=52.27  Aligned_cols=52  Identities=15%  Similarity=0.148  Sum_probs=41.0

Q ss_pred             cCcCHHHHHHHhcCCCcccccchhh------------hhhhhhhhhHH----HHhcc----cccccccccCC
Q 002896          818 GKIVYEEIIRQRMVLMMSTALEKVD------------KEVYTKLIYLL----EKSLQ----SRNFIRHSQVR  869 (869)
Q Consensus       818 ~~isy~~~~~a~~~~~~~~~Le~~~------------~~i~~~i~~~~----~~s~~----s~~fl~~~~~~  869 (869)
                      ..++|.++.+||++|+..-.++.++            ..||++..+.-    ++.+.    ..+.++|||||
T Consensus        63 ~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv  134 (361)
T KOG1187|consen   63 RSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLV  134 (361)
T ss_pred             ceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcc
Confidence            4579999999999999999999997            35777766442    23344    88899999997

>smart00370 LRR Leucine-rich repeats, outliers

Probab=82.28  E-value=1.2  Score=27.21  Aligned_cols=15  Identities=40%  Similarity=0.461  Sum_probs=7.2

Q ss_pred             CCCCeeeCcCCcCCc
Q 002896          634 VKLHYLNLSTNQFIQ  648 (869)
Q Consensus       634 ~~L~~L~Ls~N~l~~  648 (869)
                      ++|+.|+|++|++..
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00370        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            344555555555433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=82.28  E-value=1.2  Score=27.21  Aligned_cols=15  Identities=40%  Similarity=0.461  Sum_probs=7.2

Q ss_pred             CCCCeeeCcCCcCCc
Q 002896          634 VKLHYLNLSTNQFIQ  648 (869)
Q Consensus       634 ~~L~~L~Ls~N~l~~  648 (869)
                      ++|+.|+|++|++..
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00369        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            344555555555433

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=80.16  E-value=0.52  Score=28.20  Aligned_cols=12  Identities=50%  Similarity=0.659  Sum_probs=4.1

Q ss_pred             CCCeeeCcCCcC
Q 002896          635 KLHYLNLSTNQF  646 (869)
Q Consensus       635 ~L~~L~Ls~N~l  646 (869)
                      +|+.|+|++|++
T Consensus         3 ~L~~L~l~~n~i   14 (24)
T PF13516_consen    3 NLETLDLSNNQI   14 (24)
T ss_dssp             T-SEEE-TSSBE
T ss_pred             CCCEEEccCCcC
Confidence            344444444443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	869
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-53
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-32
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-53
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		8e-32
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-20
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-14
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		9e-11
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		5e-07
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-10
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		7e-07
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-09
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		4e-07
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		5e-09
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		1e-05
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		7e-09
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		7e-06
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		1e-08
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		3e-04
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		2e-08
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-08
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		2e-08
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		7e-08
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		6e-06
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		8e-08
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		1e-05
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		1e-07
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		9e-06
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		9e-06
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		3e-07
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		5e-07
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-06
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		3e-06
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		2e-04
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		1e-05
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		2e-05
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		5e-05
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		2e-04
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-04
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		1e-04
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		2e-04
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		2e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		2e-04
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		2e-04
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		2e-04
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		4e-04
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		7e-04
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		6e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		7e-04
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		8e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  208 bits (529), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 231/772 (29%), Positives = 345/772 (44%), Gaps = 104/772 (13%)
Query: 36  EEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTN--VN 93
            E+H L+ +K  L + +   LLP W+ N     +PC + G+ C    +V SI+L++  +N
Sbjct: 12  REIHQLISFKDVLPDKN---LLPDWSSNK----NPCTFDGVTCRD-DKVTSIDLSSKPLN 63
Query: 94  QIFGIIPPQI-----------------GNISKLKY------LDLSSNSFSG--TIPPQIG 128
             F  +   +                 G++S  K       LDLS NS SG  T    +G
Sbjct: 64  VGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG 123
Query: 129 NLSMLKFLYLSAN--QFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVG-----GLSSL 181
           + S LKFL +S+N   F G++   +  L+ +E L L  N +SG   + VG     G   L
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGA--NVVGWVLSDGCGEL 180
Query: 182 NELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCG 241
             LA++ N + G +   +    NL  L + +N+ S  IP  +G+  +L  L +  NKL G
Sbjct: 181 KHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237
Query: 242 SIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP--LSXXXXX 299
                +   T L  L + +N F   IP     LKSL  L L EN+  G IP  LS     
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLS----- 290
Query: 300 XXXXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSL 359
                               G   +L+GL+L+ N    ++P + G+ + L +  L  N+ 
Sbjct: 291 --------------------GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 360 SGSIPSE-IGNLKSLSNLDLSENKLSGSIPHSLGNLT-NLAILYLHSNTLLGSI-PREIG 416
           SG +P + +  ++ L  LDLS N+ SG +P SL NL+ +L  L L SN   G I P    
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 417 NLK-SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLS 475
           N K +L EL L +N  +  I  +L N + +  L L  N LSG IP  LG+L KL  L L 
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 476 DNQLQGSIPXXXXXXXXXXXXXXXXH-LTCNISESFGIHPKLTFIDLSHNNFYGQISSDW 534
            N L+G IP                + LT  I         L +I LS+N   G+I    
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Query: 535 GKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXX 594
           G+  NL    +S N+  G++P E+GD   L  +DL+ N   G IP+ +            
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570
Query: 595 XNQLF------GQLPSELGSLIQLEYLDLSS---NRLSNSIPRSLGNLV----------- 634
             + +      G      G+   LE+  + S   NRLS   P ++ + V           
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630
Query: 635 --KLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHN 692
              + +L++S N     IP ++  + +L  L+L HN +   IP ++ ++R L +L+LS N
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690
Query: 693 NLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCG 744
            L   IP+    +  L  ID+S N L GPIP    F          N GLCG
Sbjct: 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  136 bits (342), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 160/567 (28%), Positives = 259/567 (45%), Gaps = 51/567 (8%)
Query: 209 YLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLF--LGNLTNLDTLYLRNNSFSSS 266
           +L N+ ++GS+ S      SL+SL L  N L G +     LG+ + L  L + +N+    
Sbjct: 83  FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 139
Query: 267 IPSEI-GNLK--SLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSE-IGNL 322
            P ++ G LK  SL +L+L  N ++G+                      G + S+  G L
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGA-------------------NVVGWVLSDGCGEL 180
Query: 323 KSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENK 382
           K L+   ++ N++S  +   +    NL    +  N+ S  IP  +G+  +L +LD+S NK
Sbjct: 181 KHLA---ISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 234
Query: 383 LSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSL-GN 441
           LSG    ++   T L +L + SN  +G IP     LKSL  L L +NK +  I   L G 
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGA 292
Query: 442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXX--XXXXXXXXXXXX 499
              +T L L  N   G +P   G+   L  L LS N   G +P                 
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 500 XHLTCNISESF-GIHPKLTFIDLSHNNFYGQISSDWGKCP--NLGTFDVSVNNIIGSLPP 556
              +  + ES   +   L  +DLS NNF G I  +  + P   L    +  N   G +PP
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 557 EIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLD 616
            + + S+L  + LS N++ G IPS +G            N L G++P EL  +  LE L 
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 617 LSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPS 676
           L  N L+  IP  L N   L++++LS N+   EIP  + +L +L+ L LS+N     IP+
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 677 QICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEAL 736
           ++ + RSL  L+L+ N  +  IP    + +G +  +    + +  I N     D + +  
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN-----DGMKKEC 587
Query: 737 QGNEGLCGDIKGFQSCKASKSHKPASR 763
            G     G++  FQ  ++ + ++ ++R
Sbjct: 588 HG----AGNLLEFQGIRSEQLNRLSTR 610

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  207 bits (528), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 231/772 (29%), Positives = 345/772 (44%), Gaps = 104/772 (13%)
Query: 36  EEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTN--VN 93
            E+H L+ +K  L + +   LLP W+ N     +PC + G+ C    +V SI+L++  +N
Sbjct: 9   REIHQLISFKDVLPDKN---LLPDWSSNK----NPCTFDGVTCRD-DKVTSIDLSSKPLN 60
Query: 94  QIFGIIPPQI-----------------GNISKLKY------LDLSSNSFSG--TIPPQIG 128
             F  +   +                 G++S  K       LDLS NS SG  T    +G
Sbjct: 61  VGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG 120
Query: 129 NLSMLKFLYLSAN--QFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVG-----GLSSL 181
           + S LKFL +S+N   F G++   +  L+ +E L L  N +SG   + VG     G   L
Sbjct: 121 SCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGA--NVVGWVLSDGCGEL 177
Query: 182 NELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCG 241
             LA++ N + G +   +    NL  L + +N+ S  IP  +G+  +L  L +  NKL G
Sbjct: 178 KHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 234
Query: 242 SIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP--LSXXXXX 299
                +   T L  L + +N F   IP     LKSL  L L EN+  G IP  LS     
Sbjct: 235 DFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLS----- 287
Query: 300 XXXXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSL 359
                               G   +L+GL+L+ N    ++P + G+ + L +  L  N+ 
Sbjct: 288 --------------------GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 360 SGSIPSE-IGNLKSLSNLDLSENKLSGSIPHSLGNLT-NLAILYLHSNTLLGSI-PREIG 416
           SG +P + +  ++ L  LDLS N+ SG +P SL NL+ +L  L L SN   G I P    
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 417 NLK-SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLS 475
           N K +L EL L +N  +  I  +L N + +  L L  N LSG IP  LG+L KL  L L 
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 476 DNQLQGSIPXXXXXXXXXXXXXXXXH-LTCNISESFGIHPKLTFIDLSHNNFYGQISSDW 534
            N L+G IP                + LT  I         L +I LS+N   G+I    
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 507
Query: 535 GKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXX 594
           G+  NL    +S N+  G++P E+GD   L  +DL+ N   G IP+ +            
Sbjct: 508 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 567
Query: 595 XNQLF------GQLPSELGSLIQLEYLDLSS---NRLSNSIPRSLGNLV----------- 634
             + +      G      G+   LE+  + S   NRLS   P ++ + V           
Sbjct: 568 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 627
Query: 635 --KLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHN 692
              + +L++S N     IP ++  + +L  L+L HN +   IP ++ ++R L +L+LS N
Sbjct: 628 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 687
Query: 693 NLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCG 744
            L   IP+    +  L  ID+S N L GPIP    F          N GLCG
Sbjct: 688 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  135 bits (341), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 160/567 (28%), Positives = 259/567 (45%), Gaps = 51/567 (8%)
Query: 209 YLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLF--LGNLTNLDTLYLRNNSFSSS 266
           +L N+ ++GS+ S      SL+SL L  N L G +     LG+ + L  L + +N+    
Sbjct: 80  FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 136
Query: 267 IPSEI-GNLK--SLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSE-IGNL 322
            P ++ G LK  SL +L+L  N ++G+                      G + S+  G L
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISGA-------------------NVVGWVLSDGCGEL 177
Query: 323 KSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENK 382
           K L+   ++ N++S  +   +    NL    +  N+ S  IP  +G+  +L +LD+S NK
Sbjct: 178 KHLA---ISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 231
Query: 383 LSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSL-GN 441
           LSG    ++   T L +L + SN  +G IP     LKSL  L L +NK +  I   L G 
Sbjct: 232 LSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGA 289
Query: 442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXX--XXXXXXXXXXXX 499
              +T L L  N   G +P   G+   L  L LS N   G +P                 
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 500 XHLTCNISESF-GIHPKLTFIDLSHNNFYGQISSDWGKCPN--LGTFDVSVNNIIGSLPP 556
              +  + ES   +   L  +DLS NNF G I  +  + P   L    +  N   G +PP
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 557 EIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLD 616
            + + S+L  + LS N++ G IPS +G            N L G++P EL  +  LE L 
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 617 LSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPS 676
           L  N L+  IP  L N   L++++LS N+   EIP  + +L +L+ L LS+N     IP+
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 677 QICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEAL 736
           ++ + RSL  L+L+ N  +  IP    + +G +  +    + +  I N     D + +  
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN-----DGMKKEC 584
Query: 737 QGNEGLCGDIKGFQSCKASKSHKPASR 763
            G     G++  FQ  ++ + ++ ++R
Sbjct: 585 HG----AGNLLEFQGIRSEQLNRLSTR 607

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 127/288 (44%), Gaps = 39/288 (13%)
Query: 36  EEVHALLKWKTSLQNHDK-GSLLPSWTLNNATKISPCAWFGIHCN---HVGRVNSINLTN 91
           ++  ALL+ K  L N     S LP+    N T      W G+ C+      RVN+++L+ 
Sbjct: 6   QDKQALLQIKKDLGNPTTLSSWLPTTDCCNRT------WLGVLCDTDTQTYRVNNLDLSG 59
Query: 92  --------------------------VNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPP 125
                                     +N + G IPP I  +++L YL ++  + SG IP 
Sbjct: 60  LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119
Query: 126 QIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSL-NEL 184
            +  +  L  L  S N  SG +PP I  L  +  +    N++SG IP   G  S L   +
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179
Query: 185 ALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP 244
            ++ N L G IPP+  NL NLA + L  N L G      G+ K+   + L  N L   + 
Sbjct: 180 TISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238
Query: 245 LFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP 292
             +G   NL+ L LRNN    ++P  +  LK L  L +  N L G IP
Sbjct: 239 K-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 115/269 (42%), Gaps = 55/269 (20%)
Query: 315 IPSEIGNLKSLSGLELAD-NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 373
           IPS + NL  L+ L +   N L   IP  +  LT L   Y+   ++SG+IP  +  +K+L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 374 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 433
             LD S N LSG++P S+ +L NL  +    N + G+IP   G+   LF           
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF----------- 176
Query: 434 SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXX 493
                       T + +  N L+G IP    NL  L  + LS N L+G            
Sbjct: 177 ------------TSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG------------ 211
Query: 494 XXXXXXXHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKC---PNLGTFDVSVNNI 550
                      + S  FG       I L+ N     ++ D GK     NL   D+  N I
Sbjct: 212 -----------DASVLFGSDKNTQKIHLAKN----SLAFDLGKVGLSKNLNGLDLRNNRI 256
Query: 551 IGSLPPEIGDSSQLHVIDLSANHIIGKIP 579
            G+LP  +     LH +++S N++ G+IP
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 75.9 bits (185), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 547 VNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSEL 606
           +NN++G +PP I   +QLH + ++  ++ G IP  +             N L G LP  +
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 607 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHY-LNLSTNQFIQEIPIKLEKLIHLSELDL 665
            SL  L  +    NR+S +IP S G+  KL   + +S N+   +IP     L +L+ +DL
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDL 204
Query: 666 SHNFL--------GKEIPSQICNM---------------RSLEMLNLSHNNLSDFIPRCF 702
           S N L        G +  +Q  ++               ++L  L+L +N +   +P+  
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 703 EEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCG 744
            ++  L  +++S+N L G IP         + A   N+ LCG
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 158/339 (46%), Gaps = 62/339 (18%)
Query: 76  IHCNHVGRVNSI-NLTNV-------NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI 127
           ++ N +  +  + NLTN+       NQI  I P  + N++ L  L+LSSN+ S      +
Sbjct: 92  MNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SAL 147
Query: 128 GNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALT 187
             L+ L+ L  S+NQ +   P  + +L+ +E L +  N++S      +  L++L  L  T
Sbjct: 148 SGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIAT 203
Query: 188 SNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLA---LGNNKLCGSIP 244
           +N +    P  LG LTNL  L L+ N L      +IG L SL++L    L NN++    P
Sbjct: 204 NNQISDITP--LGILTNLDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP 256
Query: 245 LFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXX 304
           L    LT L  L L  N  S+  P  +  L +L+ LEL EN+L    P+S          
Sbjct: 257 L--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS---------- 302
Query: 305 XXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIP 364
                           NLK+L+ L L  N +S   P  + +LT L   + Y N +S    
Sbjct: 303 ----------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-- 342
Query: 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
           S + NL +++ L    N++S   P  L NLT +  L L+
Sbjct: 343 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 379

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 153/357 (42%), Gaps = 74/357 (20%)
Query: 343 LGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYL 402
           L  +T L A  L   S+ G     +  L +L+ ++ S N+L+   P  L NLT L  + +
Sbjct: 40  LDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM 92
Query: 403 HSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEE 462
           ++N +    P  + NL +L  L L +N++++     L NLT++  L L  N +S +    
Sbjct: 93  NNNQIADITP--LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SA 146
Query: 463 LGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFGIHPKLTFIDLS 522
           L  L  L  L+ S NQ+    P                +LT            L  +D+S
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKPLA--------------NLTT-----------LERLDIS 181
Query: 523 HNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI 582
            N     IS    K  NL +  ++ NN I  + P +G  + L  + L+ N +      +I
Sbjct: 182 SNKV-SDISV-LAKLTNLESL-IATNNQISDITP-LGILTNLDELSLNGNQL-----KDI 232
Query: 583 GXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLS 642
           G                      L SL  L  LDL++N++SN  P  L  L KL  L L 
Sbjct: 233 GT---------------------LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 643 TNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 699
            NQ     P  L  L  L+ L+L+ N L  E  S I N+++L  L L  NN+SD  P
Sbjct: 270 ANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP 322

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 158/339 (46%), Gaps = 62/339 (18%)
Query: 76  IHCNHVGRVNSI-NLTNV-------NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI 127
           ++ N +  +  + NLTN+       NQI  I P  + N++ L  L+LSSN+ S      +
Sbjct: 92  MNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SAL 147
Query: 128 GNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALT 187
             L+ L+ L  S+NQ +   P  + +L+ +E L +  N++S      +  L++L  L  T
Sbjct: 148 SGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIAT 203
Query: 188 SNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLA---LGNNKLCGSIP 244
           +N +    P  LG LTNL  L L+ N L      +IG L SL++L    L NN++    P
Sbjct: 204 NNQISDITP--LGILTNLDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP 256
Query: 245 LFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXX 304
           L    LT L  L L  N  S+  P  +  L +L+ LEL EN+L    P+S          
Sbjct: 257 L--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS---------- 302
Query: 305 XXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIP 364
                           NLK+L+ L L  N +S   P  + +LT L   + Y N +S    
Sbjct: 303 ----------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-- 342
Query: 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
           S + NL +++ L    N++S   P  L NLT +  L L+
Sbjct: 343 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 379

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 152/357 (42%), Gaps = 74/357 (20%)
Query: 343 LGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYL 402
           L  +T L A  L   S+ G     +  L +L+ ++ S N+L+   P  L NLT L  + +
Sbjct: 40  LDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM 92
Query: 403 HSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEE 462
           ++N +    P  + NL +L  L L +N++++     L NLT++  L L  N +S +    
Sbjct: 93  NNNQIADITP--LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SA 146
Query: 463 LGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFGIHPKLTFIDLS 522
           L  L  L  L  S NQ+    P                +LT            L  +D+S
Sbjct: 147 LSGLTSLQQLNFSSNQVTDLKPLA--------------NLTT-----------LERLDIS 181
Query: 523 HNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI 582
            N     IS    K  NL +  ++ NN I  + P +G  + L  + L+ N +      +I
Sbjct: 182 SNKV-SDISV-LAKLTNLESL-IATNNQISDITP-LGILTNLDELSLNGNQL-----KDI 232
Query: 583 GXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLS 642
           G                      L SL  L  LDL++N++SN  P  L  L KL  L L 
Sbjct: 233 GT---------------------LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 643 TNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 699
            NQ     P  L  L  L+ L+L+ N L  E  S I N+++L  L L  NN+SD  P
Sbjct: 270 ANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP 322

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 157/339 (46%), Gaps = 62/339 (18%)
Query: 76  IHCNHVGRVNSI-NLTNV-------NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI 127
           ++ N +  +  + NLTN+       NQI  I P  + N++ L  L+LSSN+ S      +
Sbjct: 92  MNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SAL 147
Query: 128 GNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALT 187
             L+ L+ L  S+NQ +   P  + +L+ +E L +  N++S      +  L++L  L  T
Sbjct: 148 SGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIAT 203
Query: 188 SNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLA---LGNNKLCGSIP 244
           +N +    P  LG LTNL  L L+ N L      +IG L SL++L    L NN++    P
Sbjct: 204 NNQISDITP--LGILTNLDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP 256
Query: 245 LFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXX 304
           L    LT L  L L  N  S+  P  +  L +L+ LEL EN+L    P+S          
Sbjct: 257 L--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS---------- 302
Query: 305 XXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIP 364
                           NLK+L+ L L  N +S   P  + +LT L   +   N +S    
Sbjct: 303 ----------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV-- 342
Query: 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
           S + NL +++ L    N++S   P  L NLT +  L L+
Sbjct: 343 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 379

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 152/357 (42%), Gaps = 74/357 (20%)
Query: 343 LGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYL 402
           L  +T L A  L   S+ G     +  L +L+ ++ S N+L+   P  L NLT L  + +
Sbjct: 40  LDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM 92
Query: 403 HSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEE 462
           ++N +    P  + NL +L  L L +N++++     L NLT++  L L  N +S +    
Sbjct: 93  NNNQIADITP--LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SA 146
Query: 463 LGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFGIHPKLTFIDLS 522
           L  L  L  L+ S NQ+    P                +LT            L  +D+S
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKPLA--------------NLTT-----------LERLDIS 181
Query: 523 HNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI 582
            N       S   K  NL +  ++ NN I  + P +G  + L  + L+ N +      +I
Sbjct: 182 SNKVSD--ISVLAKLTNLESL-IATNNQISDITP-LGILTNLDELSLNGNQL-----KDI 232
Query: 583 GXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLS 642
           G                      L SL  L  LDL++N++SN  P  L  L KL  L L 
Sbjct: 233 GT---------------------LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 643 TNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 699
            NQ     P  L  L  L+ L+L+ N L  E  S I N+++L  L L  NN+SD  P
Sbjct: 270 ANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP 322

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 149/339 (43%), Gaps = 75/339 (22%)
Query: 89  LTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIP 148
           L N NQI  I P  + N++ L  L L +N  +   P  + NL+ L  L LS+N  S    
Sbjct: 91  LMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS---- 142
Query: 149 PQIGHLSYIEALHL--FKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLA 206
             I  LS + +L    F NQ++   P  +  L++L  L ++SN  K S    L  LTNL 
Sbjct: 143 -DISALSGLTSLQQLNFGNQVTDLKP--LANLTTLERLDISSN--KVSDISVLAKLTNLE 197
Query: 207 ILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL--CGSIPLFLGNLTNLDTLYLRNNSFS 264
            L   NN +S   P  +G L +L  L+L  N+L   G+    L +LTNL  L L NN  S
Sbjct: 198 SLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQIS 251
Query: 265 SSIP--------------------SEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXX 304
           +  P                    S +  L +L+ LEL EN+L    P+S          
Sbjct: 252 NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS---------- 301
Query: 305 XXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIP 364
                           NLK+L+ L L  N +S   P  + +LT L   + Y N +S    
Sbjct: 302 ----------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-- 341
Query: 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
           S + NL +++ L    N++S   P  L NLT +  L L+
Sbjct: 342 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 378

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 136/311 (43%), Gaps = 56/311 (18%)
Query: 394 LTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDN 453
           L NL  +   +N L    P  + NL  L ++ + +N++++     L NLT++T L L++N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNN 117
Query: 454 ALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFGIH 513
            ++ + P  L NL  L  L LS N +                         +IS   G+ 
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI------------------------SDISALSGLT 151
Query: 514 PKLTFIDLSHNNFYGQISSDWGKCPNLGTF---DVSVNNIIGSLPPEIGDSSQLHVID-- 568
                  L   NF  Q++ D     NL T    D+S N +      +I   ++L  ++  
Sbjct: 152 S------LQQLNFGNQVT-DLKPLANLTTLERLDISSNKV-----SDISVLAKLTNLESL 199
Query: 569 LSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPR 628
           ++ N+ I  I + +G            NQL  +    L SL  L  LDL++N++SN  P 
Sbjct: 200 IATNNQISDI-TPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP- 255
Query: 629 SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLN 688
            L  L KL  L L  NQ     P  L  L  L+ L+L+ N L  E  S I N+++L  L 
Sbjct: 256 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLT 310
Query: 689 LSHNNLSDFIP 699
           L  NN+SD  P
Sbjct: 311 LYFNNISDISP 321

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 149/339 (43%), Gaps = 75/339 (22%)
Query: 89  LTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIP 148
           L N NQI  I P  + N++ L  L L +N  +   P  + NL+ L  L LS+N  S    
Sbjct: 96  LMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS---- 147
Query: 149 PQIGHLSYIEALHL--FKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLA 206
             I  LS + +L    F NQ++   P  +  L++L  L ++SN  K S    L  LTNL 
Sbjct: 148 -DISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSN--KVSDISVLAKLTNLE 202
Query: 207 ILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL--CGSIPLFLGNLTNLDTLYLRNNSFS 264
            L   NN +S   P  +G L +L  L+L  N+L   G+    L +LTNL  L L NN  S
Sbjct: 203 SLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQIS 256
Query: 265 SSIP--------------------SEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXX 304
           +  P                    S +  L +L+ LEL EN+L    P+S          
Sbjct: 257 NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS---------- 306
Query: 305 XXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIP 364
                           NLK+L+ L L  N +S   P  + +LT L   + Y N +S    
Sbjct: 307 ----------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-- 346
Query: 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
           S + NL +++ L    N++S   P  L NLT +  L L+
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 130/314 (41%), Gaps = 62/314 (19%)
Query: 394 LTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDN 453
           L NL  +   +N L    P  + NL  L ++ + +N++++     L NLT++T L L++N
Sbjct: 67  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNN 122
Query: 454 ALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFG-- 511
            ++ + P  L NL  L  L LS N +                      LT     SFG  
Sbjct: 123 QITDIDP--LKNLTNLNRLELSSNTISD--------------ISALSGLTSLQQLSFGNQ 166
Query: 512 ---IHPKLTFIDLSHNNFYGQISSD---WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLH 565
              + P      L   +      SD     K  NL +  ++ NN I  + P +G  + L 
Sbjct: 167 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL-IATNNQISDITP-LGILTNLD 224
Query: 566 VIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNS 625
            + L+ N +      +IG                      L SL  L  LDL++N++SN 
Sbjct: 225 ELSLNGNQL-----KDIGT---------------------LASLTNLTDLDLANNQISNL 258
Query: 626 IPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLE 685
            P  L  L KL  L L  NQ     P  L  L  L+ L+L+ N L  E  S I N+++L 
Sbjct: 259 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLT 312
Query: 686 MLNLSHNNLSDFIP 699
            L L  NN+SD  P
Sbjct: 313 YLTLYFNNISDISP 326

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 4/168 (2%)
Query: 314 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKS 372
           +IPS I        L+L  N+LSS        LT L   YL  N L  ++P+ I   LK+
Sbjct: 30  AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86
Query: 373 LSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLS 432
           L  L +++NKL          L NLA L L  N L    PR   +L  L  L LG N+L 
Sbjct: 87  LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Query: 433 NSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 480
           +        LT +  L LY+N L  V       L +L  L L +NQL+
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 613 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLG 671
           + LDL SN+LS+   ++   L KL  L L+ N+ +Q +P  + ++L +L  L ++ N L 
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKL- 97
Query: 672 KEIPSQICN-MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719
           + +P  + + + +L  L L  N L    PR F+ +  L Y+ + YNEL 
Sbjct: 98  QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
Query: 322 LKSLSGLELADN-ELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSE 380
           L  L  L+L+DN +L S  P     L  L   +L +  L    P     L +L  L L +
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 381 NKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLG 440
           N L      +  +L NL  L+LH N +     R    L SL  L L  N++++   H+  
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Query: 441 NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 477
           +L  +  L L+ N LS +  E L  L  L  L L+DN
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
Query: 322 LKSLSGLELADN-ELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSE 380
           L  L  L+L+DN +L S  P     L  L   +L +  L    P     L +L  L L +
Sbjct: 78  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 381 NKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLG 440
           N L      +  +L NL  L+LH N +     R    L SL  L L  N++++   H+  
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 197
Query: 441 NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 477
           +L  +  L L+ N LS +  E L  L  L  L L+DN
Sbjct: 198 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 12/163 (7%)
Query: 322 LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSEN 381
           L +L GLEL DN+++   P  L NLT +    L  N L     S I  L+S+  LDL+  
Sbjct: 68  LNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 123
Query: 382 KLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN 441
           +++   P  L  L+NL +LYL  N +    P  +  L +L  L +G+N++++     L N
Sbjct: 124 QITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVND--LTPLAN 177
Query: 442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP 484
           L+ +T L   DN +S + P  L +L  L  + L DNQ+    P
Sbjct: 178 LSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP 218

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 148/339 (43%), Gaps = 75/339 (22%)
Query: 89  LTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIP 148
           L N NQI  I P  + N++ L  L L +N  +   P  + NL+ L  L LS+N  S    
Sbjct: 95  LMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS---- 146
Query: 149 PQIGHLSYIEALHL--FKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLA 206
             I  LS + +L    F NQ++   P  +  L++L  L ++SN  K S    L  LTNL 
Sbjct: 147 -DISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSN--KVSDISVLAKLTNLE 201
Query: 207 ILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL--CGSIPLFLGNLTNLDTLYLRNNSFS 264
            L   NN +S   P  +G L +L  L+L  N+L   G+    L +LTNL  L L NN  S
Sbjct: 202 SLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQIS 255
Query: 265 SSIP--------------------SEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXX 304
           +  P                    S +  L +L+ LEL EN+L    P+S          
Sbjct: 256 NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS---------- 305
Query: 305 XXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIP 364
                           NLK+L+ L L  N +S   P  + +LT L   +   N +S    
Sbjct: 306 ----------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV-- 345
Query: 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
           S + NL +++ L    N++S   P  L NLT +  L L+
Sbjct: 346 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 382

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 130/314 (41%), Gaps = 62/314 (19%)
Query: 394 LTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDN 453
           L NL  +   +N L    P  + NL  L ++ + +N++++     L NLT++T L L++N
Sbjct: 66  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNN 121
Query: 454 ALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFG-- 511
            ++ + P  L NL  L  L LS N +                      LT     SFG  
Sbjct: 122 QITDIDP--LKNLTNLNRLELSSNTISD--------------ISALSGLTSLQQLSFGNQ 165
Query: 512 ---IHPKLTFIDLSHNNFYGQISSD---WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLH 565
              + P      L   +      SD     K  NL +  ++ NN I  + P +G  + L 
Sbjct: 166 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL-IATNNQISDITP-LGILTNLD 223
Query: 566 VIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNS 625
            + L+ N +      +IG                      L SL  L  LDL++N++SN 
Sbjct: 224 ELSLNGNQL-----KDIGT---------------------LASLTNLTDLDLANNQISNL 257
Query: 626 IPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLE 685
            P  L  L KL  L L  NQ     P  L  L  L+ L+L+ N L  E  S I N+++L 
Sbjct: 258 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLT 311
Query: 686 MLNLSHNNLSDFIP 699
            L L  NN+SD  P
Sbjct: 312 YLTLYFNNISDISP 325

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 148/339 (43%), Gaps = 75/339 (22%)
Query: 89  LTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIP 148
           L N NQI  I P  + N++ L  L L +N  +   P  + NL+ L  L LS+N  S    
Sbjct: 91  LMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS---- 142
Query: 149 PQIGHLSYIEALHL--FKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLA 206
             I  LS + +L    F NQ++   P  +  L++L  L ++SN  K S    L  LTNL 
Sbjct: 143 -DISALSGLTSLQQLNFGNQVTDLKP--LANLTTLERLDISSN--KVSDISVLAKLTNLE 197
Query: 207 ILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL--CGSIPLFLGNLTNLDTLYLRNNSFS 264
            L   NN +S   P  +G L +L  L+L  N+L   G+    L +LTNL  L L NN  S
Sbjct: 198 SLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQIS 251
Query: 265 SSIP--------------------SEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXX 304
           +  P                    S +  L +L+ LEL EN+L    P+S          
Sbjct: 252 NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS---------- 301
Query: 305 XXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIP 364
                           NLK+L+ L L  N +S   P  + +LT L   +   N +S    
Sbjct: 302 ----------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV-- 341
Query: 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
           S + NL +++ L    N++S   P  L NLT +  L L+
Sbjct: 342 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 378

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 136/311 (43%), Gaps = 56/311 (18%)
Query: 394 LTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDN 453
           L NL  +   +N L    P  + NL  L ++ + +N++++     L NLT++T L L++N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNN 117
Query: 454 ALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFGIH 513
            ++ + P  L NL  L  L LS N +                         +IS   G+ 
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI------------------------SDISALSGLT 151
Query: 514 PKLTFIDLSHNNFYGQISSDWGKCPNLGTF---DVSVNNIIGSLPPEIGDSSQLHVID-- 568
                  L   NF  Q++ D     NL T    D+S N +      +I   ++L  ++  
Sbjct: 152 S------LQQLNFGNQVT-DLKPLANLTTLERLDISSNKV-----SDISVLAKLTNLESL 199
Query: 569 LSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPR 628
           ++ N+ I  I + +G            NQL  +    L SL  L  LDL++N++SN  P 
Sbjct: 200 IATNNQISDI-TPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP- 255
Query: 629 SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLN 688
            L  L KL  L L  NQ     P  L  L  L+ L+L+ N L  E  S I N+++L  L 
Sbjct: 256 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLT 310
Query: 689 LSHNNLSDFIP 699
           L  NN+SD  P
Sbjct: 311 LYFNNISDISP 321

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 80/179 (44%), Gaps = 3/179 (1%)
Query: 109 LKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSAN-QFSGRIPPQIGHLSYIEALHLFKNQL 167
           L  L L SN+ +G        L++L+ L LS N Q     P     L ++  LHL +  L
Sbjct: 57  LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 168 SGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLK 227
               P    GL++L  L L  N L+     +  +L NL  L+LH N +          L 
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLH 176
Query: 228 SLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGEN 285
           SL  L L  N +    P    +L  L TLYL  N+  S +P+E+   L+SL  L L +N
Sbjct: 177 SLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL-SMLPAEVLVPLRSLQYLRLNDN 234

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 92/227 (40%), Gaps = 33/227 (14%)
Query: 208 LYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS----F 263
           ++LH N +S    +   + ++L+ L L +N L G        LT L+ L L +N+     
Sbjct: 36  IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 264 SSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLK 323
             +    +G+L +L +   G   L                            P     L 
Sbjct: 96  DPTTFRGLGHLHTLHLDRCGLQELG---------------------------PGLFRGLA 128
Query: 324 SLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKL 383
           +L  L L DN L +   +   +L NL   +L+ N +          L SL  L L +N +
Sbjct: 129 ALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHV 188
Query: 384 SGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDN 429
           +   PH+  +L  L  LYL +N  L  +P E+   L+SL  L+L DN
Sbjct: 189 ARVHPHAFRDLGRLMTLYLFANN-LSMLPAEVLVPLRSLQYLRLNDN 234

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 68/157 (43%), Gaps = 1/157 (0%)
Query: 322 LKSLSGLELADN-ELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSE 380
           L  L  L+L+DN +L    P     L +L   +L +  L    P     L +L  L L +
Sbjct: 78  LTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 381 NKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLG 440
           N L     ++  +L NL  L+LH N +          L SL  L L  N ++    H+  
Sbjct: 138 NNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFR 197
Query: 441 NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 477
           +L  +  L L+ N LS +  E L  L  L  L L+DN
Sbjct: 198 DLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 12/163 (7%)
Query: 322 LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSEN 381
           L +L GLEL DN+++   P  L NLT +    L  N L     S I  L+S+  LDL+  
Sbjct: 62  LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 117
Query: 382 KLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN 441
           +++   P  L  L+NL +LYL  N +    P  +  L +L  L +G+ ++S+     L N
Sbjct: 118 QITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD--LTPLAN 171
Query: 442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP 484
           L+ +T L   DN +S + P  L +L  L  + L +NQ+    P
Sbjct: 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 136/350 (38%), Gaps = 64/350 (18%)
Query: 390 SLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHS--LGNLTHMTL 447
           +  NL NL IL L S+ +    P     L  LFEL+L    LS+++       NL  +T 
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 448 LALYDNALSGV-IPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNI 506
           L L  N +  + +    G L  L  +  S NQ+                      L C  
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI---------------------FLVCEH 166
Query: 507 SESFGIHPKLTFIDLSHNNFYGQISSDWGKCPN------LGTFDVSVN----NIIGSLPP 556
                    L+F  L+ N+ Y ++S DWGKC N      L   DVS N    +I G+   
Sbjct: 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226
Query: 557 EIGDSSQLHVIDLSANHIIG--------KIPSEIGXXXXXXXXXXXXNQLFGQLPSELGS 608
            I  S    +I   A+HI+G        K P +              N   G   S +  
Sbjct: 227 AISKSQAFSLI--LAHHIMGAGFGFHNIKDPDQ--------------NTFAGLARSSV-- 268
Query: 609 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHN 668
                +LDLS   + +   R    L  L  LNL+ N+  +        L +L  L+LS+N
Sbjct: 269 ----RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324
Query: 669 FLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
            LG+   S    +  +  ++L  N+++    + F+ +  L  +D+  N L
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 104 GNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFS--GRIPPQIGHLSYIEALH 161
             IS   +LD S+N  + T+    G+L+ L+ L L  NQ     +I      +  ++ L 
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 162 LFKNQLS-GPIPHEVGGLSSLNELALTSNFLKGSI----PPSLGNLTNLAILYLHNNSLS 216
           + +N +S      +     SL  L ++SN L  +I    PP       + +L LH+N + 
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP------RIKVLDLHSNKIK 434
Query: 217 GSIPSEIGNLKSLSSLALGNNKLCGSIPL-FLGNLTNLDTLYLRNNSFSSSIP 268
            SIP ++  L++L  L + +N+L  S+P      LT+L  ++L  N +  S P
Sbjct: 435 -SIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 135/291 (46%), Gaps = 26/291 (8%)
Query: 91  NVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQ 150
           N NQI  I P  + N+ KL  L + +N  +     Q  NL+ L+ LYL+ +  S   P  
Sbjct: 74  NGNQITDISP--LSNLVKLTNLYIGTNKITDISALQ--NLTNLRELYLNEDNISDISP-- 127
Query: 151 IGHLSYIEALHLFKNQ-LSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILY 209
           + +L+   +L+L  N  LS   P  +   + LN L +T + +K   P  + NLT+L  L 
Sbjct: 128 LANLTKXYSLNLGANHNLSDLSP--LSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183
Query: 210 LHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPS 269
           L+ N +    P  + +L SL       N++    P+   N T L++L + NN  +   P 
Sbjct: 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITPV--ANXTRLNSLKIGNNKITDLSP- 238
Query: 270 EIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLKSLSGLE 329
            + NL  L+ LE+G N+++    ++                    I S + NL  L+ L 
Sbjct: 239 -LANLSQLTWLEIGTNQISD---INAVKDLTKLKXLNVGSNQISDI-SVLNNLSQLNSLF 293
Query: 330 LADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSE 380
           L +N+L +     +G LTNL   +L +N ++   P     L SLS  D ++
Sbjct: 294 LNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP-----LASLSKXDSAD 339

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 129/284 (45%), Gaps = 21/284 (7%)
Query: 151 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL 210
           I +L+ +E L+L  NQ++   P  +  L  L  L + +N  K +   +L NLTNL  LYL
Sbjct: 62  IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN--KITDISALQNLTNLRELYL 117
Query: 211 HNNSLSGSIPSEIGNLKSLSSLALG-NNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPS 269
           + +++S   P  + NL    SL LG N+ L    PL   N T L+ L +  +      P 
Sbjct: 118 NEDNISDISP--LANLTKXYSLNLGANHNLSDLSPL--SNXTGLNYLTVTESKVKDVTP- 172
Query: 270 EIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLKSLSGLE 329
            I NL  L  L L  N++    PL+                      + + N   L+ L+
Sbjct: 173 -IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI----TPVANXTRLNSLK 227
Query: 330 LADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPH 389
           + +N+++   P  L NL+ L    +  N +S    + + +L  L  L++  N++S     
Sbjct: 228 IGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQISD--IS 281
Query: 390 SLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 433
            L NL+ L  L+L++N L       IG L +L  L L  N +++
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITD 325

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 90/226 (39%), Gaps = 25/226 (11%)
Query: 204 NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF 263
           + A+L L NN ++     +  NLK+L +L L NNK+    P     L  L+ LYL  N  
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 264 S---SSIPSEIGNLK------------------SLSILELGENRLNGS-IPLSXXXXXXX 301
                 +P  +  L+                   + ++ELG N L  S I          
Sbjct: 113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 302 XXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG 361
                       +IP   G   SL+ L L  N+++      L  L NLA   L  NS+S 
Sbjct: 173 LSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL 407
                + N   L  L L+ NKL   +P  L +   + ++YLH+N +
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 90/226 (39%), Gaps = 25/226 (11%)
Query: 204 NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF 263
           + A+L L NN ++     +  NLK+L +L L NNK+    P     L  L+ LYL  N  
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 264 S---SSIPSEIGNLK------------------SLSILELGENRLNGS-IPLSXXXXXXX 301
                 +P  +  L+                   + ++ELG N L  S I          
Sbjct: 113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 302 XXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG 361
                       +IP   G   SL+ L L  N+++      L  L NLA   L  NS+S 
Sbjct: 173 LSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL 407
                + N   L  L L+ NKL   +P  L +   + ++YLH+N +
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/127 (33%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 328 LELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLSGS 386
           L L DN+++   P    +L NL   YL  N L G++P  +  +L  L+ LDL  N+L+  
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 387 IPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHS----LGNL 442
                  L +L  L++  N L   +PR I  L  L  L L  N+L  SI H     L +L
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSL 161
Query: 443 THMTLLA 449
           TH  L  
Sbjct: 162 THAYLFG 168

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 596 NQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLE 655
           NQ+    P    SLI L+ L L SN+L         +L +L  L+L TNQ         +
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109
Query: 656 KLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLY 710
           +L+HL EL +  N L  E+P  I  +  L  L L  N L       F+ ++ L +
Sbjct: 110 RLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Query: 612 LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFL 670
           + YL L  N+L +    +L  L  L YL L+ NQ +Q +P  + +KL +L EL L  N L
Sbjct: 65  VRYLALGGNKLHDI--SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQL 121
Query: 671 GKEIPSQICN-MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719
            + +P  + + + +L  LNL+HN L       F+++  L  +D+SYN+L 
Sbjct: 122 -QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%)
Query: 317 SEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNL 376
            E  +   L  LEL +N +S+  P    NL NL    L  N L          L +L+ L
Sbjct: 50  DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109
Query: 377 DLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSIS 436
           D+SENK+   + +   +L NL  L +  N L+    R    L SL +L L    L++  +
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169
Query: 437 HSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLS 475
            +L +L  + +L L    ++ +       L +L +L +S
Sbjct: 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 348 NLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL 407
           ++   YL  N  +  +P E+ N K L+ +DLS N++S     S  N+T L  L L  N L
Sbjct: 32  DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 408 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNAL 455
               PR    LKSL  L L  N +S     +  +L+ ++ LA+  N L
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 155 SYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNN 213
           S    L L  N+L   +PH V   L+ L +L+L+ N ++         LT L ILYLH N
Sbjct: 28  SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86
Query: 214 SLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPL-FLGNLTNLDTLYLRNNSFSSSIP 268
            L  S+P+ +   L  L  LAL  N+L  S+P      LT+L  ++L  N +  S P
Sbjct: 87  KLQ-SLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 343 LGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILY 401
           L  LTNL    L  N L  S+P+ +   L +L  L L EN+L          LTNL  LY
Sbjct: 81  LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 402 LHSNTLLGSIPREI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIP 460
           L+ N  L S+P+ +   L +L  L L +N+L +        LT +  L+L DN L  V  
Sbjct: 140 LYHNQ-LQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 461 EELGNLVKLTMLTLSDN 477
                L  LT + L +N
Sbjct: 199 GVFDRLTSLTHIWLLNN 215

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 205 LAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFS 264
           L  LYL+ NSL+  +P+EI NL +L  L L +N+L  S+P  LG+   L   Y  +N   
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN-MV 305
Query: 265 SSIPSEIGNLKSLSILELGENRL 287
           +++P E GNL +L  L +  N L
Sbjct: 306 TTLPWEFGNLCNLQFLGVEGNPL 328

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 41/87 (47%)
Query: 391 LGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLAL 450
            G L +L  L L  N L G  P        + ELQLG+NK+    +     L  +  L L
Sbjct: 50  FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 451 YDNALSGVIPEELGNLVKLTMLTLSDN 477
           YDN +S V+P    +L  LT L L+ N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 16/209 (7%)
Query: 190 FLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCG--SIPLFL 247
           F+    PPS  + T    L    N  + S+      LK L +L L  N L     + L  
Sbjct: 343 FIHMVCPPSPSSFT---FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399
Query: 248 GNLTNLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXX 306
            N+++L+TL +  NS +S +        +S+ +L L  N L GS+               
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLD 456
Query: 307 XXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSE 366
                  SIP ++ +L++L  L +A N+L S        LT+L   +L+ N    + P  
Sbjct: 457 LHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG- 515
Query: 367 IGNLKSLSNLDLSENKLSGSIPHSLGNLT 395
              ++ LS      NK SG + +S G++ 
Sbjct: 516 ---IRYLSEWI---NKHSGVVRNSAGSVA 538

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 320 GNLKSLSGLELADNELSS--SIPHYLGNLTNLAAFYLYKNSL-SGSIPSEIGNLKSLSNL 376
             LK L  L L  N L +   +     N+++L    +  NSL S +        +S+  L
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433
Query: 377 DLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSIS 436
           +LS N L+GS+   L     + +L LH+N ++ SIP+++ +L++L EL +  N+L +   
Sbjct: 434 NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPD 490
Query: 437 HSLGNLTHMTLLALYDNALSGVIP 460
                LT +  + L+DN      P
Sbjct: 491 GVFDRLTSLQYIWLHDNPWDCTCP 514

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 32/169 (18%)
Query: 562 SQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNR 621
           +QL  +DL+A H+ G                         LPS +  L  L+ L LS N 
Sbjct: 275 TQLQELDLTATHLKG-------------------------LPSGMKGLNLLKKLVLSVNH 309
Query: 622 LSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK---LEKLIHLSELDLSHNFL-GKEIPS- 676
                  S  N   L +L +  N  ++++ +    LEKL +L  LDLSHN +   +  S 
Sbjct: 310 FDQLCQISAANFPSLTHLYIRGN--VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSL 367
Query: 677 QICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 725
           Q+ N+  L+ LNLSHN       + F+E   L  +D+++  LH   P S
Sbjct: 368 QLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQS 416

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 97/226 (42%), Gaps = 36/226 (15%)
Query: 514 PKLTFIDLSHN--NFYGQIS-SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLS 570
           P L F+DLS N  +F G  S SD+G   +L   D+S N +I      +G   QL  +D  
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQ 404
Query: 571 ANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSL 630
            +++  K  SE                      S   SL  L YLD+S      +     
Sbjct: 405 HSNL--KQMSEF---------------------SVFLSLRNLIYLDISHTHTRVAFNGIF 441
Query: 631 GNLVKLHYLNLSTNQFIQE-IPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL 689
             L  L  L ++ N F +  +P    +L +L+ LDLS   L +  P+   ++ SL++LN+
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 690 SHNNLSDFIPRCFEEMNGLLYIDISYNELHGP-------IPNSTAF 728
           SHNN        ++ +N L  +D S N +           P+S AF
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 547

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 14/156 (8%)
Query: 609 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHN 668
           L+ L YL+L    L + IP +L  LV+L  L LS N+     P   + L  L +L L H 
Sbjct: 155 LVNLRYLNLGMCNLKD-IP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212
Query: 669 FLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAF 728
            +     +   +++SLE LNLSHNNL       F  ++ L  + +++N  H    +    
Sbjct: 213 QVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNC-DVLWL 271
Query: 729 SDALMEALQGNEGLCGDIKGFQSCKASKSHKPASRK 764
           S  L E +  N   C           ++ H PA  K
Sbjct: 272 SWWLKETVPSNTTCC-----------ARCHAPAGLK 296

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	869
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-120
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-111
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-101
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-90
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-67
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-90
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-90
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-89
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-66
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-78
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-86
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-76
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-77
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-75
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-61
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-54
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-60
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-60
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-60
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-55
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-59
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-56
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-54
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-51
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-46
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-57
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-55
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-51
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-47
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-43
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-41
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-54
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-54
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-53
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-52
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-53
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-51
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-46
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-40
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-47
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-45
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-42
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-40
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-46
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-45
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-45
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-44
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-44
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-42
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-40
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-43
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-39
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-39
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-42
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-42
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-41
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-40
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-39
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-35
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-33
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-42
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-40
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-40
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-39
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-38
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-37
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-41
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-40
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-37
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-40
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-38
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-38
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-37
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-36
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-33
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-33
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-37
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-37
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-35
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-37
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-36
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-34
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-32
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-31
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-30
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-36
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-30
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-29
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-28
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-34
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-33
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-31
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-32
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-30
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-30
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-31
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-30
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-30
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-29
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-30
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-29
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-27
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-25
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-28
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-27
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-27
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-27
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-27
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-27
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-27
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-24
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-27
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-24
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-23
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-22
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-22
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-23
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-23
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-23
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-22
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-21
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-20
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-21
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-21
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-21
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-21
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-21
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-19
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-19
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-17
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-17
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-16
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-16
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-14
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-14
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-12
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-10
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	7e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	7e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  608 bits (1571), Expect = 0.0
 Identities = 229/752 (30%), Positives = 329/752 (43%), Gaps = 56/752 (7%)

Query: 32  SDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTN 91
                E+H L+ +K  L +    +LLP W+ N     +PC + G+ C    +V SI+L++
Sbjct: 8   QSLYREIHQLISFKDVLPDK---NLLPDWSSNK----NPCTFDGVTCRD-DKVTSIDLSS 59

Query: 92  V--NQIFGIIP-----------------------PQIGNISKLKYLDLSSNSFSGTIPP- 125
              N  F  +                              + L  LDLS NS SG +   
Sbjct: 60  KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL 119

Query: 126 -QIGNLSMLKFLYLSANQFSGRIP-PQIGHLSYIEALHLFKNQLSGPIPHEV---GGLSS 180
             +G+ S LKFL +S+N             L+ +E L L  N +SG          G   
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179

Query: 181 LNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLC 240
           L  LA++ N + G +   +    NL  L + +N+ S  IP  +G+  +L  L +  NKL 
Sbjct: 180 LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236

Query: 241 GSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSL-GNLT 299
           G     +   T L  L + +N F   IP     LKSL  L L EN+  G IP  L G   
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD 294

Query: 300 NLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIP-HYLGNLTNLAAFYLYKNS 358
            L  L L  N   G++P   G+   L  L L+ N  S  +P   L  +  L    L  N 
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354

Query: 359 LSGSIPSEIGNLK-SLSNLDLSENKLSGSIPHSLGN--LTNLAILYLHSNTLLGSIPREI 415
            SG +P  + NL  SL  LDLS N  SG I  +L       L  LYL +N   G IP  +
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414

Query: 416 GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLS 475
            N   L  L L  N LS +I  SLG+L+ +  L L+ N L G IP+EL  +  L  L L 
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 476 DNQLQGSIPN-LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDW 534
            N L G IP+ L N TNL  + L+ N LT  I +  G    L  + LS+N+F G I ++ 
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

Query: 535 GKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILR 594
           G C +L   D++ N   G++P  +   S      ++AN I GK    I       +    
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMKKECHGA 590

Query: 595 RN--QLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPI 652
            N  +  G    +L  L      +++S         +  N   + +L++S N     IP 
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650

Query: 653 KLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYID 712
           ++  + +L  L+L HN +   IP ++ ++R L +L+LS N L   IP+    +  L  ID
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710

Query: 713 ISYNELHGPIPNSTAFSDALMEALQGNEGLCG 744
           +S N L GPIP    F          N GLCG
Sbjct: 711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  378 bits (973), Expect = e-120
 Identities = 148/662 (22%), Positives = 233/662 (35%), Gaps = 42/662 (6%)

Query: 109 LKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLS 168
            +  D S    +  +P  +   + +  L L+ NQ            S + +L +  N +S
Sbjct: 6   HEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 169 GPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKS 228
              P     L  L  L L  N L      +    TNL  L+L +NS+     +     K+
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 229 LSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLK--SLSILELGENR 286
           L +L L +N L  +       L NL  L L NN   +    E+      SL  LEL  N+
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 287 LNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIG---NLKSLSGLELADNELSSSIPHYL 343
           +    P     +  L  L+L    L  S+  ++       S+  L L++++LS++     
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

Query: 344 GNL--TNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILY 401
             L  TNL    L  N+L+         L  L    L  N +     HSL  L N+  L 
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302

Query: 402 LHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPE 461
           L  +                 +  +    L      S   L  +  L + DN + G+   
Sbjct: 303 LKRS---------------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347

Query: 462 ELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLI-----RLRLNRNHLTCNISESFGIHPKL 516
               L+ L  L+LS++             +L       L L +N ++   S++F     L
Sbjct: 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407

Query: 517 TFIDLSHNNFYGQISSD-WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHI- 574
             +DL  N    +++   W    N+    +S N  +            L  + L    + 
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 575 -IGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLS--------NS 625
            +   PS    L +L  L L  N +       L  L +LE LDL  N L+          
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 626 IPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLE 685
               L  L  LH LNL +N F +      + L  L  +DL  N L     S   N  SL+
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587

Query: 686 MLNLSHNNLSDFIPRCFEE-MNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCG 744
            LNL  N ++    + F      L  +D+ +N       +   F + + E       L  
Sbjct: 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647

Query: 745 DI 746
             
Sbjct: 648 HY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.3 bits (191), Expect = 9e-15
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 21/137 (15%)

Query: 610 IQLEYLDLS---------------------SNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ 648
           +  E  D S                      N+L      +     +L  L++  N   +
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 649 EIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGL 708
             P   +KL  L  L+L HN L +          +L  L+L  N++       F +   L
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 709 LYIDISYNELHGPIPNS 725
           + +D+S+N L      +
Sbjct: 124 ITLDLSHNGLSSTKLGT 140

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  353 bits (908), Expect = e-111
 Identities = 105/682 (15%), Positives = 213/682 (31%), Gaps = 93/682 (13%)

Query: 36  EEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQI 95
             V   L         D  +L   W   +A      +  G         N      ++  
Sbjct: 16  AIVPIKLSRTAEYIK-DYLALKEIW---DALNGKNWSQQGFGTQPGANWNF--NKELDMW 69

Query: 96  FGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLS 155
                  + +  ++  L L     SG +P  IG L+ L+ L L ++              
Sbjct: 70  GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF----- 124

Query: 156 YIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLG--NLTNLAILYLHNN 213
                           P  +    S  +        + +        + ++L    ++++
Sbjct: 125 ---------------GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD 169

Query: 214 SLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGN 273
               SI          + +   +N +   +   +  LT L   Y+ N+ F +    E   
Sbjct: 170 PQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWE 228

Query: 274 LKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADN 333
            ++         +   +  L   NL +L  + +Y       +P+ +  L  +  + +A N
Sbjct: 229 NENSEY-----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 334 ELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKL-SGSIPHSLG 392
              S                  +        ++    + +  + +  N L +  +  SL 
Sbjct: 284 RGIS----------------GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327

Query: 393 NLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYD 452
            +  L +L    N L G +P   G+   L  L L  N+++   ++  G    +  L+   
Sbjct: 328 KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386

Query: 453 NALSGVIPE-ELGNLVKLTMLTLSDNQLQGSIPN--------LRNLTNLIRLRLNRNHLT 503
           N L  +    +  ++  ++ +  S N++                   N+  + L+ N ++
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 504 CNISESFGIHPKLTFIDLSHNNF-------YGQISSDWGKCPNLGTFDVSVNNIIGSLPP 556
               E F     L+ I+L  N             + ++     L + D+   N +  L  
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR-FNKLTKLSD 505

Query: 557 EIGDS--SQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEY 614
           +   +    L  IDLS N    K P++    S+L    +R                    
Sbjct: 506 DFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQ------------------ 546

Query: 615 LDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI 674
            D   NR     P  +     L  L + +N  I+++  K+    ++S LD+  N      
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKI--TPNISVLDIKDNPNISID 603

Query: 675 PSQICNMRSLEMLNLSHNNLSD 696
            S +C      M  L ++   D
Sbjct: 604 LSYVCPYIEAGMYMLFYDKTQD 625

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  328 bits (842), Expect = e-101
 Identities = 95/565 (16%), Positives = 171/565 (30%), Gaps = 71/565 (12%)

Query: 198 SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCG----SIPLFLGNLTNL 253
           SL +   +  L L     SG +P  IG L  L  LALG++          P  +    + 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 254 DTLYLRNNSFSSSIPSEIGNLK--SLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL 311
           +        +  +            L    +  +    SI  S         +   +N++
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 312 SGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLK 371
           +  +   +  L  L    + ++   +          N             +   +  NLK
Sbjct: 196 T-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLKWDNLK 249

Query: 372 SLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLL--------GSIPREIGNLKSLFE 423
            L+++++        +P  L  L  + ++ +  N  +             +    + +  
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 424 LQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSI 483
           + +G N L                        +  +   L  + KL ML    NQL+G +
Sbjct: 310 IYIGYNNLK-----------------------TFPVETSLQKMKKLGMLECLYNQLEGKL 346

Query: 484 PNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG-QISSDWGKCPNLGT 542
           P   +   L  L L  N +T   +   G   ++  +  +HN         D      +  
Sbjct: 347 PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA 406

Query: 543 FDVSVNNI-------IGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRR 595
            D S N I          L P       +  I+LS N I           S L  + L  
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466

Query: 596 NQL-------FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSL--GNLVKLHYLNLSTNQF 646
           N L                +   L  +DL  N+L+  +        L  L  ++LS N F
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSF 525

Query: 647 IQEIP------IKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPR 700
             + P        L+     ++ D   N   +E P  I    SL  L +  N++      
Sbjct: 526 -SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE- 583

Query: 701 CFEEMNGLLYIDISYNELHGPIPNS 725
             +    +  +DI  N       + 
Sbjct: 584 --KITPNISVLDIKDNPNISIDLSY 606

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  304 bits (781), Expect = 2e-90
 Identities = 104/670 (15%), Positives = 204/670 (30%), Gaps = 85/670 (12%)

Query: 45  KTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINL-TNVNQIFGIIPPQI 103
           +T+    D  +L   W    A       ++    N+     + N    ++         +
Sbjct: 263 ETAEYIKDYKALKAIW---EALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDL 319

Query: 104 GNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLF 163
            N  ++  L L+     G +P  IG L+ LK L    +  +             +     
Sbjct: 320 DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 164 KNQLSGPIPHEVGG-LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSE 222
           K+++              LN   L  + +  +  P +  +   + + L +  +       
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNL---- 433

Query: 223 IGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILEL 282
                         N++   I   +  LT L  +Y  N+ F+    +      +      
Sbjct: 434 -------------TNRI-TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD---- 475

Query: 283 GENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHY 342
              +   +  LS  NL +L  + LY       +P  + +L  L  L +A N    S    
Sbjct: 476 -YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG-ISAAQL 533

Query: 343 LGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSG-SIPHSLGNLTNLAILY 401
             + T               +  +      +    +  N L       SL  +  L +L 
Sbjct: 534 KADWTR--------------LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLD 579

Query: 402 LHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPE 461
              N +        G    L +L+L  N++             +  L    N L  +   
Sbjct: 580 CVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNI 637

Query: 462 -ELGNLVKLTMLTLSDNQLQGSIPNL------RNLTNLIRLRLNRNHLTCNISESFGIHP 514
               ++  +  +  S N++     N+          N   + L+ N +    +E F    
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697

Query: 515 KLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHI 574
            ++ I LS+N     I                  N +        ++  L  IDL  N  
Sbjct: 698 PISTIILSNNLM-TSIPE----------------NSLKPKDGNYKNTYLLTTIDLRFNK- 739

Query: 575 IGKIPSEI--GKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDL------SSNRLSNSI 626
           +  +  +     L  L  + +  N      P++  +  QL+   +        NR+    
Sbjct: 740 LTSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798

Query: 627 PRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEM 686
           P  +     L  L + +N  I+++  KL     L  LD++ N       + +C      M
Sbjct: 799 PTGITTCPSLIQLQIGSND-IRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGM 855

Query: 687 LNLSHNNLSD 696
             L ++   D
Sbjct: 856 YVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  301 bits (771), Expect = 3e-89
 Identities = 101/616 (16%), Positives = 203/616 (32%), Gaps = 55/616 (8%)

Query: 165 NQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIG 224
            + +  I       +    L   +         +  +  N        +        ++ 
Sbjct: 262 KETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFN-KELDMWGDQPGVDLD 320

Query: 225 NLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGE 284
           N   ++ L+L      G +P  +G LT L  L    +S + S         +  + E  +
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 285 NRLNGSIP-LSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELS------S 337
           +R+      + L     L+   L  ++++ +   E+  +K  S + L D ++       +
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 338 SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNL 397
            I   +  LT L   Y   +  +    +         + +    K   +   S  NL +L
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDNIAV-----DWEDANSDYAKQYENEELSWSNLKDL 493

Query: 398 AILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLS---------NSISHSLGNLTHMTLL 448
             + L++   +  +P  + +L  L  L +  N+             ++        + + 
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 449 ALYDNALSGVIPE-ELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNIS 507
            +  N L        L  +VKL +L    N+++  +        L  L+L+ N +     
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEIPE 612

Query: 508 ESFGIHPKLTFIDLSHNNFYG-QISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS----- 561
           +      ++  +  SHN         +      +G+ D S  N IGS    I  S     
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFS-YNKIGSEGRNISCSMDDYK 671

Query: 562 -SQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL-------FGQLPSELGSLIQLE 613
                 + LS N I           S +  +IL  N +                +   L 
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731

Query: 614 YLDLSSNRLSNSIPRSL--GNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSH---- 667
            +DL  N+L+ S+        L  L  +++S N F    P +      L    + H    
Sbjct: 732 TIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDA 789

Query: 668 --NFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL-HGPIPN 724
             N + ++ P+ I    SL  L +  N++        +    L  +DI+ N      + +
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE---KLTPQLYILDIADNPNISIDVTS 846

Query: 725 STAFSDALMEALQGNE 740
              + +A M  L  ++
Sbjct: 847 VCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  238 bits (609), Expect = 8e-67
 Identities = 68/454 (14%), Positives = 142/454 (31%), Gaps = 50/454 (11%)

Query: 88  NLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRI 147
            + N+      I   I  ++KL+ +  +++ F+                     +     
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYAKQYENE 483

Query: 148 PPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG---------SIPPS 198
                +L  +  + L+       +P  +  L  L  L +  N              +   
Sbjct: 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

Query: 199 LGNLTNLAILYLHNNSLSGSIPS-EIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLY 257
                 + I Y+  N+L     S  +  +  L  L   +NK+   +  F G    L  L 
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLEAF-GTNVKLTDLK 601

Query: 258 LRNNSFSSSIPSEIG-NLKSLSILELGENRLNGSIP--LSLGNLTNLDTLYLYTNSLSG- 313
           L  N     IP +       +  L    N+L   IP   +  ++  + ++    N +   
Sbjct: 602 LDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSE 659

Query: 314 ----SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLS-------GS 362
               S   +     + S + L+ NE+           + ++   L  N ++         
Sbjct: 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719

Query: 363 IPSEIGNLKSLSNLDLSENKLSGSIPHSL--GNLTNLAILYLHSNTLLGSIPREIGNLKS 420
                 N   L+ +DL  NKL+ S+        L  L+ + +  N    S P +  N   
Sbjct: 720 KDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQ 777

Query: 421 LFELQL------GDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTL 474
           L    +        N++       +     +  L +  N +   + E+L    +L +L +
Sbjct: 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDI 834

Query: 475 SDNQL-QGSIPNLRNL--TNLIRLRLNRNHLTCN 505
           +DN      + ++       +  L  ++      
Sbjct: 835 ADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRG 868

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  296 bits (761), Expect = 4e-90
 Identities = 117/552 (21%), Positives = 193/552 (34%), Gaps = 30/552 (5%)

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 253
            IP +L    +   L L  N L         +   L  L L   ++         +L++L
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 254 DTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL-S 312
            TL L  N   S        L SL  L   E  L       +G+L  L  L +  N + S
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 313 GSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAF----YLYKNSLSGSIPSEIG 368
             +P    NL +L  L+L+ N++ S     L  L  +        L  N ++   P    
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 369 NLKSLSNLDLSENKLSGSIP-HSLGNLTNLAILYLHSNTLLGSIPRE---IGNLKSLFEL 424
            +  L  L L  N  S ++    +  L  L +  L           E      L+ L  L
Sbjct: 199 EI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 425 QLGDNKLS------NSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 478
            + + +L+      + I      LT+++  +L    +  V             L L + +
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCK 315

Query: 479 LQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHN--NFYGQISSDWGK 536
                     L +L RL    N      + S    P L F+DLS N  +F G  S     
Sbjct: 316 FGQFPTL--KLKSLKRLTFTSNKG--GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 537 CPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRR 595
             +L   D+S N +I  +        QL  +D   +++       +   L +LI L +  
Sbjct: 372 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 596 NQLFGQLPSELGSLIQLEYLDLSSNRLSNSI-PRSLGNLVKLHYLNLSTNQFIQEIPIKL 654
                        L  LE L ++ N    +  P     L  L +L+LS  Q  Q  P   
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 655 EKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLL-YIDI 713
             L  L  L++SHN            + SL++L+ S N++     +  +     L ++++
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 550

Query: 714 SYNELHGPIPNS 725
           + N+      + 
Sbjct: 551 TQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  296 bits (759), Expect = 7e-90
 Identities = 120/535 (22%), Positives = 189/535 (35%), Gaps = 24/535 (4%)

Query: 179 SSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNK 238
            S   L L+ N L+     S  +   L +L L    +         +L  LS+L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 239 LCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNG-SIPLSLGN 297
           +          L++L  L     + +S     IG+LK+L  L +  N +    +P    N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 298 LTNLDTLYLYTNSLSGSIPSEIGNLKSLS----GLELADNELSSSIPHYLGNLTNLAAFY 353
           LTNL+ L L +N +     +++  L  +      L+L+ N ++   P     +  L    
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLT 206

Query: 354 LYKNSLSGSIPSE-IGNLKSLSNLDLSENKLSGS------IPHSLGNLTNLAILYLHSNT 406
           L  N  S ++    I  L  L    L   +             +L  L NL I       
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 407 L---LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEEL 463
           L   L  I      L ++    L    +      S         L L +         +L
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPTLKL 324

Query: 464 GNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSH 523
            +L +LT  +        S  +L +L  L  L  N        S+S      L ++DLS 
Sbjct: 325 KSLKRLTFTSNKGGNA-FSEVDLPSLEFL-DLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 524 NNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEI-GDSSQLHVIDLSANHIIGKIPSEI 582
           N     +SS++     L   D   +N+       +      L  +D+S  H         
Sbjct: 383 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 583 GKLSSLIKLILRRNQLFGQLPSE-LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNL 641
             LSSL  L +  N        +    L  L +LDLS  +L    P +  +L  L  LN+
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 642 STNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNM-RSLEMLNLSHNNLS 695
           S N F        + L  L  LD S N +      ++ +   SL  LNL+ N+ +
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  293 bits (753), Expect = 5e-89
 Identities = 130/612 (21%), Positives = 205/612 (33%), Gaps = 53/612 (8%)

Query: 99  IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIE 158
           IP  +      K LDLS N           +   L+ L LS  +           LS++ 
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 159 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSL-SG 217
            L L  N +         GLSSL +L      L       +G+L  L  L + +N + S 
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 218 SIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLD----TLYLRNNSFSSSIPSEIGN 273
            +P    NL +L  L L +NK+       L  L  +     +L L  N  +   P     
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 274 LKSLSILELGENRLNGSIP-LSLGNLTNLDTLYLYTNSLSGS------IPSEIGNLKSLS 326
           +  L  L L  N  + ++    +  L  L+   L                S +  L +L+
Sbjct: 200 I-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 327 GLELADNELSSS---IPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKL 383
             E     L      I      LTN+++F L   ++               +L+L   K 
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKF 316

Query: 384 SGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLT 443
                  L +L  L             +     +L SL  L L  N LS           
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEV-----DLPSLEFLDLSRNGLS----------- 360

Query: 444 HMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLT 503
                        G   +       L  L LS N +     N   L  L  L    ++L 
Sbjct: 361 -----------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409

Query: 504 CNISES-FGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEI-GDS 561
                S F     L ++D+SH +     +  +    +L    ++ N+   +  P+I  + 
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 562 SQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNR 621
             L  +DLS   +    P+    LSSL  L +  N  F         L  L+ LD S N 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 622 LSNSIPRSLGNLVK-LHYLNLSTNQFIQEIPIK--LEKLIHLSELDLSHNFLGKEIPSQI 678
           +  S  + L +    L +LNL+ N F      +  L+ +    +L +    +    PS  
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

Query: 679 CNMRSLEMLNLS 690
             M  +  LN++
Sbjct: 590 QGM-PVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  230 bits (589), Expect = 7e-66
 Identities = 96/491 (19%), Positives = 164/491 (33%), Gaps = 44/491 (8%)

Query: 249 NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYT 308
            + N+    +  N     IP  +    S   L+L  N L      S  +   L  L L  
Sbjct: 6   VVPNITYQCMELNF--YKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 309 NSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIG 368
             +         +L  LS L L  N + S        L++L      + +L+      IG
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 369 NLKSLSNLDLSENKL-SGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSL----FE 423
           +LK+L  L+++ N + S  +P    NLTNL  L L SN +      ++  L  +      
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 424 LQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEE-LGNLVKLTMLTLSDNQLQGS 482
           L L  N ++  I         +  L L +N  S  + +  +  L  L +  L   + +  
Sbjct: 182 LDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 483 I----PNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCP 538
                 +   L  L  L +    L                     + +   I   +    
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYL------------------DYYLDDIIDLFNCLT 282

Query: 539 NLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL 598
           N+ +F +    I          +     ++L           ++  L  L     +    
Sbjct: 283 NVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340

Query: 599 FGQLPSELGSLIQLEYLDLSSNRLS--NSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEK 656
           F         L  LE+LDLS N LS      +S      L YL+LS N  +  +      
Sbjct: 341 FS-----EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLG 394

Query: 657 LIHLSELDLSHNFLGKEIPSQI-CNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISY 715
           L  L  LD  H+ L +     +  ++R+L  L++SH +        F  ++ L  + ++ 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 716 NELHGPIPNST 726
           N          
Sbjct: 455 NSFQENFLPDI 465

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  185 bits (472), Expect = 6e-50
 Identities = 76/436 (17%), Positives = 134/436 (30%), Gaps = 55/436 (12%)

Query: 83  RVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQ 142
           R++ + L N      ++   I  ++ L+   L    F      +                
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE---------------- 244

Query: 143 FSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNL 202
                      L  +  L + + +L+                    ++    I      L
Sbjct: 245 -----KFDKSALEGLCNLTIEEFRLA------------------YLDYYLDDIIDLFNCL 281

Query: 203 TNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS 262
           TN++   L + ++                L L N K      L L +L  L     +  +
Sbjct: 282 TNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 339

Query: 263 FSSSIPSEIGNLKSLSILELGENRLN--GSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIG 320
             S +     +L SL  L+L  N L+  G    S    T+L  L L  N +   + S   
Sbjct: 340 AFSEV-----DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFL 393

Query: 321 NLKSLSGLELADNELSSSIPHY-LGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLS 379
            L+ L  L+   + L          +L NL    +       +       L SL  L ++
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 380 ENKLSGSI-PHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHS 438
            N    +  P     L NL  L L    L    P    +L SL  L +  N   +  +  
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513

Query: 439 LGNLTHMTLLALYDNALSGVIPEELGNLVK-LTMLTLSDNQLQGSIPN---LRNLTNLIR 494
              L  + +L    N +     +EL +    L  L L+ N    +  +   L+ + +  +
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 573

Query: 495 LRLNRNHLTCNISESF 510
           L +    + C      
Sbjct: 574 LLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  185 bits (471), Expect = 8e-50
 Identities = 67/343 (19%), Positives = 114/343 (33%), Gaps = 15/343 (4%)

Query: 84  VNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQF 143
           +    L  ++     I      ++ +    L S +               + L L   +F
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKF 316

Query: 144 SGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFL--KGSIPPSLGN 201
                 ++  L       L      G        L SL  L L+ N L  KG    S   
Sbjct: 317 GQFPTLKLKSLKR-----LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 202 LTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPL-FLGNLTNLDTLYLRN 260
            T+L  L L  N +   + S    L+ L  L   ++ L          +L NL  L + +
Sbjct: 372 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 261 NSFSSSIPSEIGNLKSLSILELGENRLNGSI-PLSLGNLTNLDTLYLYTNSLSGSIPSEI 319
                +       L SL +L++  N    +  P     L NL  L L    L    P+  
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 320 GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNL-KSLSNLDL 378
            +L SL  L ++ N   S        L +L       N +  S   E+ +   SL+ L+L
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 550

Query: 379 SENKLSGSIPHS--LGNLTNLAILYLHSNTLLGSIPREIGNLK 419
           ++N  + +  H   L  + +   L +    +  + P +   + 
Sbjct: 551 TQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 593

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  170 bits (432), Expect = 9e-45
 Identities = 68/398 (17%), Positives = 131/398 (32%), Gaps = 46/398 (11%)

Query: 345 NLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHS 404
            + N+    +  N     IP  +    S  NLDLS N L     +S  +   L +L L  
Sbjct: 6   VVPNITYQCMELNFYK--IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 405 NTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELG 464
             +         +L  L  L L  N + +    +   L+ +  L   +  L+ +    +G
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 465 NLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHN 524
           +L  L  L ++ N +Q                         + E F     L  +DLS N
Sbjct: 122 HLKTLKELNVAHNLIQSF----------------------KLPEYFSNLTNLEHLDLSSN 159

Query: 525 NFYGQISSDWGKCPNLGTFDVSVN---NIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSE 581
                  +D      +   ++S++   N +  + P      +LH + L  N     +   
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 582 -IGKLSSLIKLILRRNQLFGQ---LPSELGSLIQLEYLDLSSNRLS------NSIPRSLG 631
            I  L+ L    L   +   +      +  +L  L  L +   RL+      + I     
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 632 NLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSH 691
            L  +   +L +    +              L+L +   G+    ++ +++ L   +   
Sbjct: 280 CLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337

Query: 692 NNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFS 729
            N    +     ++  L ++D+S N L      S +  
Sbjct: 338 GNAFSEV-----DLPSLEFLDLSRNGLSFKGCCSQSDF 370

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  288 bits (740), Expect = 3e-87
 Identities = 114/550 (20%), Positives = 186/550 (33%), Gaps = 33/550 (6%)

Query: 107 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQ 166
           +  + L+ S N            L  L FL L+  Q              ++ L L  N 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 167 LSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNL 226
           L       + G  +L  L      +       L N   L  LYL +N +S     +    
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 227 KSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLR-NNSFSSSIPSEIGNLKSLSILELGEN 285
           + L  L   NN +       + +L     L L  N +  + I     +      L  G  
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

Query: 286 RLNGSIPLSLGN--LTNLDTLYLYTNSLSGSIPSEIGNLKSLSG--LELADNELSSSIPH 341
           +    I   L N  + +L              P+    L  +S   + L  +   +   +
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272

Query: 342 YLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILY 401
                + L    L    LS  +PS +  L +L  L LS NK       S  N  +L  L 
Sbjct: 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331

Query: 402 LHSNTLLGSIPRE-IGNLKSLFELQLGDNKLSNS--ISHSLGNLTHMTLLALYDNALSGV 458
           +  NT    +    + NL++L EL L  + +  S   +  L NL+H+  L L  N    +
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391

Query: 459 IPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKL 516
             E      +L +L L+  +L+        +NL  L  L L+ + L  +  + F   P L
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 517 TFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIG 576
             ++L  N+F                               +    +L ++ LS   +  
Sbjct: 452 QHLNLQGNHFPK---------------------GNIQKTNSLQTLGRLEILVLSFCDLSS 490

Query: 577 KIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKL 636
                   L  +  + L  N+L       L  L  + YL+L+SN +S  +P  L  L + 
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQ 549

Query: 637 HYLNLSTNQF 646
             +NL  N  
Sbjct: 550 RTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  284 bits (728), Expect = 2e-85
 Identities = 120/574 (20%), Positives = 204/574 (35%), Gaps = 40/574 (6%)

Query: 134 KFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG 193
           K         +  IP  +   +  E L    N L          L +L  L LT   +  
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 253
               +  +   L  L L  N L     + +   K+L  L      +     + L N   L
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 254 DTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLS- 312
           ++LYL +N  SS    +    + L +L+   N ++      + +L     L L  N    
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 313 GSIPSEIGNLKSLSGLELADNELSSSIPHYLGN--LTNLAAFYLYKNSLSGSIPSEIGNL 370
             I     +      L     +    I   L N  + +L              P+    L
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 371 KSLS--NLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGD 428
             +S  +++L ++       ++    + L  L L +   L  +P  +  L +L +L L  
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSA 310

Query: 429 NKLSNSISHSLGNLTHMTLLALYDNALSGVIPEE-LGNLVKLTMLTLSDNQLQGSIPN-- 485
           NK  N    S  N   +T L++  N     +    L NL  L  L LS + ++ S     
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 486 -LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFD 544
            LRNL++L  L L+ N      +E+F   P+L  +DL+                    F 
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV--------KDAQSPF- 421

Query: 545 VSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL---FGQ 601
                          +   L V++LS + +          L +L  L L+ N       Q
Sbjct: 422 --------------QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

Query: 602 LPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLS 661
             + L +L +LE L LS   LS+    +  +L  +++++LS N+        L  L  + 
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI- 526

Query: 662 ELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS 695
            L+L+ N +   +PS +  +     +NL  N L 
Sbjct: 527 YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  279 bits (717), Expect = 6e-84
 Identities = 108/540 (20%), Positives = 190/540 (35%), Gaps = 17/540 (3%)

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 253
            IP +L    +   L    N L     +    L +L+ L L   ++         +   L
Sbjct: 26  EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL 83

Query: 254 DTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG 313
           DTL L  N       + +   K+L  L   +  ++    + L N   L++LYL +N +S 
Sbjct: 84  DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143

Query: 314 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLS-GSIPSEIGNLKS 372
               +    + L  L+  +N +       + +L       L  N      I     +   
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203

Query: 373 LSNLDLSENKLSGSIPHSLGN--LTNLAILYLHSNTLLGSIPREIGNLK--SLFELQLGD 428
             +L+    +    I   L N  + +L +            P     L   S+  + L  
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 429 NKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN-LR 487
           +   N  S++    + +  L L    LS  +P  L  L  L  L LS N+ +        
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISAS 322

Query: 488 NLTNLIRLRLNRNHLTCNI-SESFGIHPKLTFIDLSHNNFYGQISSD--WGKCPNLGTFD 544
           N  +L  L +  N     + +        L  +DLSH++       +       +L + +
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382

Query: 545 VSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIP-SEIGKLSSLIKLILRRNQLFGQLP 603
           +S N  +        +  QL ++DL+   +  K   S    L  L  L L  + L     
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442

Query: 604 SELGSLIQLEYLDLSSNRLSNSI---PRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL 660
                L  L++L+L  N           SL  L +L  L LS              L  +
Sbjct: 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502

Query: 661 SELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHG 720
           + +DLSHN L       + +++ +  LNL+ N++S  +P     ++    I++  N L  
Sbjct: 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  263 bits (674), Expect = 9e-78
 Identities = 105/531 (19%), Positives = 182/531 (34%), Gaps = 40/531 (7%)

Query: 231 SLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGS 290
           +    N  L   IP  L    + + L    N   +   +    L +L+ L+L   ++   
Sbjct: 16  TYNCENLGL-NEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 291 IPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLA 350
              +  +   LDTL L  N L     + +   K+L  L      +SS     L N   L 
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 351 AFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH-SNTLLG 409
           + YL  N +S     +    + L  LD   N +       + +L     L L+ +   + 
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

Query: 410 SIPREIGNLKSLFELQLGDNKLSNSISHSLGNLT-------------------------- 443
            I     +      L  G  +    I   L N T                          
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252

Query: 444 --HMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNH 501
              +  + L  +    +          L  L L+   L      L  L+ L +L L+ N 
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK 312

Query: 502 LTCNISESFGIHPKLTFIDLSHNNFYGQISSDW-GKCPNLGTFDVSVNNI--IGSLPPEI 558
                  S    P LT + +  N    ++ +       NL   D+S ++I        ++
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 559 GDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLP-SELGSLIQLEYLDL 617
            + S L  ++LS N  +        +   L  L L   +L  +   S   +L  L+ L+L
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

Query: 618 SSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK---LEKLIHLSELDLSHNFLGKEI 674
           S + L  S  +    L  L +LNL  N F +    K   L+ L  L  L LS   L    
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492

Query: 675 PSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 725
                +++ +  ++LSHN L+         +   +Y++++ N +   +P+ 
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK-GIYLNLASNHISIILPSL 542

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  275 bits (707), Expect = 6e-86
 Identities = 99/380 (26%), Positives = 147/380 (38%), Gaps = 80/380 (21%)

Query: 36  EEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQI 95
           ++  ALL+ K  L N    + L SW     T      W G+ C+                
Sbjct: 6   QDKQALLQIKKDLGNP---TTLSSW--LPTTDCCNRTWLGVLCDT--------------- 45

Query: 96  FGIIPPQIGNISKLKYLDLSSNSFSGT--IPPQIGNLSMLKFLYLSANQFSGRIPPQIGH 153
                       ++  LDLS  +      IP  + NL  L FLY+               
Sbjct: 46  -------DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI------------ 86

Query: 154 LSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNN 213
                                              N L G IPP++  LT L  LY+ + 
Sbjct: 87  -----------------------------------NNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 214 SLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGN 273
           ++SG+IP  +  +K+L +L    N L G++P  + +L NL  +    N  S +IP   G+
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 274 LKSLS-ILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELAD 332
              L   + +  NRL G IP +  NL NL  + L  N L G      G+ K+   + LA 
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 333 NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLG 392
           N L+  +   +G   NL    L  N + G++P  +  LK L +L++S N L G IP   G
Sbjct: 231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGG 288

Query: 393 NLTNLAILYLHSNTLLGSIP 412
           NL    +    +N  L   P
Sbjct: 289 NLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  249 bits (638), Expect = 5e-76
 Identities = 75/292 (25%), Positives = 123/292 (42%), Gaps = 10/292 (3%)

Query: 266 SIPSEIGNLKSLS----ILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGS--IPSEI 319
            I  ++GN  +LS      +       G +  +      ++ L L   +L     IPS +
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 320 GNLKSLSGLELAD-NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDL 378
            NL  L+ L +   N L   IP  +  LT L   Y+   ++SG+IP  +  +K+L  LD 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 379 SENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFE-LQLGDNKLSNSISH 437
           S N LSG++P S+ +L NL  +    N + G+IP   G+   LF  + +  N+L+  I  
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

Query: 438 SLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRL 497
           +  NL  +  + L  N L G      G+      + L+ N L   +  +    NL  L L
Sbjct: 193 TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL 251

Query: 498 NRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 549
             N +   + +       L  +++S NN  G+I    G          + N 
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  187 bits (477), Expect = 2e-53
 Identities = 65/274 (23%), Positives = 115/274 (41%), Gaps = 30/274 (10%)

Query: 499 RNHLTCNISESFGIHPKLTFIDLSHNNFYGQ--ISSDWGKCPNLGTFDVS-VNNIIGSLP 555
                  + ++     ++  +DLS  N      I S     P L    +  +NN++G +P
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 556 PEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYL 615
           P I   +QLH + ++  ++ G IP  + ++ +L+ L    N L G LP  + SL  L  +
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 616 DLSSNRLSNSIPRSLGNLVKLH-YLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI 674
               NR+S +IP S G+  KL   + +S N+   +IP     L +L+ +DLS N L  + 
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDA 213

Query: 675 PSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYN------------------ 716
                + ++ + ++L+ N+L+  + +       L  +D+  N                  
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 717 ------ELHGPIPNSTAFSDALMEALQGNEGLCG 744
                  L G IP         + A   N+ LCG
Sbjct: 273 LNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  263 bits (673), Expect = 1e-77
 Identities = 111/544 (20%), Positives = 185/544 (34%), Gaps = 28/544 (5%)

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 253
            +P  +   ++   + L  N L         N   L  L L   ++          L +L
Sbjct: 25  KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82

Query: 254 DTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG 313
             L L  N   S  P     L SL  L   E +L       +G L  L  L +  N +  
Sbjct: 83  SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 314 -SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAF----YLYKNSLSGSIPSEIG 368
             +P+   NL +L  ++L+ N + +   + L  L           +  N +   I  +  
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAF 201

Query: 369 NLKSLSNLDLSENKLSGSIP-HSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLF----- 422
               L  L L  N  S +I    L NL  L +  L           EI     +      
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 423 ---ELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQL 479
              E +L      +        L +++ ++L   ++  +  E++    K   L++   QL
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQL 319

Query: 480 QGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFY--GQISSDWGKC 537
           +   P L +L  L  L L  N  +  IS      P L+++DLS N     G  S      
Sbjct: 320 K-QFPTL-DLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375

Query: 538 PNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIP-SEIGKLSSLIKLILRRN 596
            +L   D+S  N    +        +L  +D   + +      S    L  L+ L +   
Sbjct: 376 NSLRHLDLS-FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 597 QLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRS-LGNLVKLHYLNLSTNQFIQEIPIKLE 655
                       L  L  L ++ N   ++   +   N   L +L+LS  Q  Q      +
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494

Query: 656 KLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISY 715
            L  L  L++SHN L     S    + SL  L+ S N +             L + +++ 
Sbjct: 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

Query: 716 NELH 719
           N + 
Sbjct: 555 NSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  256 bits (656), Expect = 3e-75
 Identities = 122/558 (21%), Positives = 181/558 (32%), Gaps = 36/558 (6%)

Query: 99  IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIE 158
           +P  I   S  K +DLS N           N S L++L LS  +           L ++ 
Sbjct: 26  VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83

Query: 159 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSG- 217
            L L  N +    P    GL+SL  L      L       +G L  L  L + +N +   
Sbjct: 84  NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143

Query: 218 SIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLD----TLYLRNNSFSSSIPSEIGN 273
            +P+   NL +L  + L  N +       L  L        +L +  N     I  +   
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQ 202

Query: 274 LKSLSILELGENRLNGSIP-LSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELAD 332
              L  L L  N  + +I    L NL  L    L           EI     + GL    
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC--- 259

Query: 333 NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLG 392
                           +  F L   +       +   L ++S + L+   +       + 
Sbjct: 260 -------------DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVP 304

Query: 393 NLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYD 452
                  L +     L   P    +L  L  L L  NK   SIS     L  ++ L L  
Sbjct: 305 KHFKWQSLSIIRC-QLKQFP--TLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSR 359

Query: 453 NALSGVIPEELGNL--VKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISES- 509
           NALS        +L    L  L LS N       N   L  L  L    + L      S 
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSA 419

Query: 510 FGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEI-GDSSQLHVID 568
           F    KL ++D+S+ N        +    +L T  ++ N+   +    +  +++ L  +D
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

Query: 569 LSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPR 628
           LS   +          L  L  L +  N L     S    L  L  LD S NR+  S   
Sbjct: 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539

Query: 629 SLGNLVKLHYLNLSTNQF 646
                  L + NL+ N  
Sbjct: 540 LQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  175 bits (446), Expect = 1e-46
 Identities = 77/387 (19%), Positives = 137/387 (35%), Gaps = 28/387 (7%)

Query: 352 FYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSI 411
           +      LS  +P +I +  S  N+DLS N L     +S  N + L  L L    +    
Sbjct: 16  YQCMDQKLS-KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 412 PREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTM 471
            +    L  L  L L  N + +    S   LT +  L   +  L+ +    +G L+ L  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 472 LTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESF----GIHPKLTFIDLSHNN 525
           L ++ N +          NLTNL+ + L+ N++                    +D+S N 
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 526 FYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEIGK 584
               I     +   L    +  N    ++      + + LHV  L       +   EI +
Sbjct: 193 I-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 585 LS--------SLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKL 636
            S        ++ +  L     F     +   L  +  + L+   +       +    K 
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKW 309

Query: 637 HYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD 696
             L++   Q +++ P     L  L  L L+ N     I  +   + SL  L+LS N LS 
Sbjct: 310 QSLSIIRCQ-LKQFPT--LDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSF 364

Query: 697 FIPRCFEEMNG--LLYIDISYNELHGP 721
                + ++    L ++D+S+N     
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAIIM 391

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  125 bits (315), Expect = 7e-30
 Identities = 51/218 (23%), Positives = 79/218 (36%), Gaps = 5/218 (2%)

Query: 99  IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSM--LKFLYLSANQFSGRIPPQIGHLSY 156
           I  +   +  L YLDLS N+ S +      +L    L+ L LS N     +      L  
Sbjct: 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEE 400

Query: 157 IEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSL 215
           ++ L    + L           L  L  L ++    K         LT+L  L +  NS 
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 216 SGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNL 274
             +  S +  N  +L+ L L   +L          L  L  L + +N+      S    L
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520

Query: 275 KSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLS 312
            SLS L+   NR+  S  +      +L    L  NS++
Sbjct: 521 YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  118 bits (297), Expect = 1e-27
 Identities = 43/200 (21%), Positives = 62/200 (31%), Gaps = 5/200 (2%)

Query: 93  NQIFGIIP--PQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQ 150
           N +             + L++LDLS N     +      L  L+ L    +         
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFS 418

Query: 151 -IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPS-LGNLTNLAIL 208
               L  +  L +              GL+SLN L +  N  K +   +   N TNL  L
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478

Query: 209 YLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIP 268
            L    L          L  L  L + +N L          L +L TL    N   +S  
Sbjct: 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

Query: 269 SEIGNLKSLSILELGENRLN 288
                 KSL+   L  N + 
Sbjct: 539 ILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  109 bits (275), Expect = 5e-25
 Identities = 39/206 (18%), Positives = 74/206 (35%), Gaps = 7/206 (3%)

Query: 63  NNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGT 122
           N  +    C++  +  N +     ++L+  N    I+      + +L++LD   ++    
Sbjct: 360 NALSFSGCCSYSDLGTNSL---RHLDLSF-NGAI-IMSANFMGLEELQHLDFQHSTLKRV 414

Query: 123 IPPQ-IGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEV-GGLSS 180
                  +L  L +L +S              L+ +  L +  N         V    ++
Sbjct: 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474

Query: 181 LNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLC 240
           L  L L+   L+         L  L +L + +N+L     S    L SLS+L    N++ 
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534

Query: 241 GSIPLFLGNLTNLDTLYLRNNSFSSS 266
            S  +      +L    L NNS +  
Sbjct: 535 TSKGILQHFPKSLAFFNLTNNSVACI 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  102 bits (256), Expect = 1e-22
 Identities = 43/187 (22%), Positives = 70/187 (37%), Gaps = 5/187 (2%)

Query: 552 GSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQ 611
           GSL P I     +         +  K+P +I   SS   + L  N L         +  +
Sbjct: 2   GSLNPCIEVVPNITY-QCMDQKL-SKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 612 LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLG 671
           L++LDLS   +     ++   L  L  L L+ N      P     L  L  L      L 
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 672 KEIPSQICNMRSLEMLNLSHNNLSDF-IPRCFEEMNGLLYIDISYNELHGPIPNSTAFSD 730
                 I  + +L+ LN++HN +    +P  F  +  L+++D+SYN +     N   F  
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 731 ALMEALQ 737
              +   
Sbjct: 178 ENPQVNL 184

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  215 bits (550), Expect = 9e-61
 Identities = 112/561 (19%), Positives = 188/561 (33%), Gaps = 55/561 (9%)

Query: 179 SSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNK 238
            S   L L+ N L+     S  +   L +L L    +         +L  LS+L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 239 LCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN-GSIPLSLGN 297
           +          L++L  L     + +S     IG+LK+L  L +  N +    +P    N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 298 LTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKN 357
           LTNL+ L L +N +     +++  L  +  L L+ +                    L  N
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD--------------------LSLN 187

Query: 358 SLSGSIPSEIGNLKSLSNLDLSENKLSGSIPH-SLGNLTNLAILYLHSNTLLGSIPREIG 416
            ++  I         L  L L  N  S ++    +  L  L +  L              
Sbjct: 188 PMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE------ 240

Query: 417 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV---IPEELGNLVKLTMLT 473
                         L      +L  L ++T+       L      I +    L  ++  +
Sbjct: 241 ------------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 474 LSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSD 533
           L    ++  + +         L L         +        L  +  + N      S  
Sbjct: 289 LVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKL---KSLKRLTFTSNKGGNAFSEV 344

Query: 534 WGKCPNLGTFDVSVNNI--IGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKL 591
               P+L   D+S N +   G        ++ L  +DLS N +I  + S    L  L  L
Sbjct: 345 --DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 401

Query: 592 ILRRNQLFG-QLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEI 650
             + + L      S   SL  L YLD+S      +       L  L  L ++ N F +  
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 651 PIK-LEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLL 709
                 +L +L+ LDLS   L +  P+   ++ SL++LN++ N L       F+ +  L 
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521

Query: 710 YIDISYNELHGPIPNSTAFSD 730
            I +  N      P     S 
Sbjct: 522 KIWLHTNPWDCSCPRIDYLSR 542

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  197 bits (503), Expect = 2e-54
 Identities = 124/567 (21%), Positives = 194/567 (34%), Gaps = 77/567 (13%)

Query: 99  IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIE 158
           IP  +      K LDLS N           +   L+ L LS  +           +  IE
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-----------IQTIE 68

Query: 159 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGS 218
                              LS L+ L LT N ++     +   L++L  L     +L+  
Sbjct: 69  DGAY-------------QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 219 IPSEIGNLKSLSSLALGNNKL-CGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSL 277
               IG+LK+L  L + +N +    +P +  NLTNL+ L L +N   S   +++  L  +
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 278 SI----LELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSE-IGNLKSLSGLELA- 331
            +    L+L  N +N  I         L  L L  N  S ++    I  L  L    L  
Sbjct: 176 PLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 332 -----DNELSSSIPHYLGNLTNLAAFYLYKNSLSGS---IPSEIGNLKSLSNLDLSENKL 383
                +  L       L  L NL         L      I      L ++S+  L    +
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 384 SGSIPHS-LGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNL 442
                 S      +L ++                 LKSL  L    NK  N+   S  +L
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFGQF------PTLKLKSLKRLTFTSNKGGNAF--SEVDL 346

Query: 443 THMTLLALYDNALS--GVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRN 500
             +  L L  N LS  G   +       L  L LS N +     N   L  L  L    +
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406

Query: 501 HLTCNISES-FGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIG 559
           +L      S F     L ++D+SH +     +  +    +L    ++ N+   +  P+I 
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI- 465

Query: 560 DSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSS 619
                                   +L +L  L L + QL    P+   SL  L+ L+++S
Sbjct: 466 ----------------------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503

Query: 620 NRLSNSIPRSLGNLVKLHYLNLSTNQF 646
           N+L +        L  L  + L TN +
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  160 bits (406), Expect = 1e-41
 Identities = 85/438 (19%), Positives = 157/438 (35%), Gaps = 38/438 (8%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSF-SGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI 151
             +  +    IG++  LK L+++ N   S  +P    NL+ L+ L LS+N+        +
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 152 GHLS----YIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPP-SLGNLTNLA 206
             L        +L L  N ++  I         L++L L +NF   ++    +  L  L 
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 207 ILYL------HNNSLSGSIPSEIGNLKSLSSLALGNNKL---CGSIPLFLGNLTNLDTLY 257
           +  L      +  +L     S +  L +L+        L      I      LTN+ +  
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 258 LRNNSFSSSIP-SEIGNLKSLSILELGENRLNGSIPLSL----------------GNLTN 300
           L + +       S     + L ++     +       SL                 +L +
Sbjct: 289 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348

Query: 301 LDTLYLYTNSLS--GSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS 358
           L+ L L  N LS  G          SL  L+L+ N + + +      L  L       ++
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN 407

Query: 359 LSGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-G 416
           L       +  +L++L  LD+S      +       L++L +L +  N+   +   +I  
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 417 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 476
            L++L  L L   +L      +  +L+ + +L +  N L  V       L  L  + L  
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

Query: 477 NQLQGSIPNLRNLTNLIR 494
           N    S P +  L+  + 
Sbjct: 528 NPWDCSCPRIDYLSRWLN 545

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  151 bits (383), Expect = 1e-38
 Identities = 79/412 (19%), Positives = 135/412 (32%), Gaps = 39/412 (9%)

Query: 352 FYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSI 411
           +   + +    IP  +    S  NLDLS N L     +S  +   L +L L    +    
Sbjct: 12  YQCMELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 412 PREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTM 471
                +L  L  L L  N + +    +   L+ +  L   +  L+ +    +G+L  L  
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 472 LTLSDNQLQ--GSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLS---HNNF 526
           L ++ N +Q         NLTNL  L L+ N +         +  ++  ++LS     N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 527 YGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVIDL------SANHIIGKIP 579
              I     K   L    +  N    ++        + L V  L      +  ++     
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 580 SEIGKLSSLIKLILRRNQL---FGQLPSELGSLIQLEYLDLSSNRLSNSIPRS-LGNLVK 635
           S +  L +L     R   L      +      L  +    L S  +      S       
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308

Query: 636 LHYLNLSTNQFIQEIPIKLEKLI----------------HLSELDLSHNFLGKE--IPSQ 677
           L  +N    QF       L++L                  L  LDLS N L  +      
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 678 ICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFS 729
                SL+ L+LS N +   +   F  +  L ++D  ++ L   +   + F 
Sbjct: 369 DFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ-MSEFSVFL 418

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  101 bits (254), Expect = 2e-22
 Identities = 61/256 (23%), Positives = 97/256 (37%), Gaps = 15/256 (5%)

Query: 490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 549
            +   L L+ N L    S SF   P+L  +DLS           +    +L T  ++  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GN 86

Query: 550 IIGSLPPEI-GDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL-FGQLPSELG 607
            I SL        S L  +     ++       IG L +L +L +  N +   +LP    
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 608 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHY----LNLSTNQFIQEIPIKLEKLIHLSEL 663
           +L  LE+LDLSSN++ +     L  L ++      L+LS N  +  I     K I L +L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKL 205

Query: 664 DLSHNFLGKEIPSQIC-NMRSLEMLNL------SHNNLSDFIPRCFEEMNGLLYIDISYN 716
            L +NF    +       +  LE+  L      +  NL  F     E +  L   +    
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 717 ELHGPIPNSTAFSDAL 732
            L   + +     + L
Sbjct: 266 YLDYYLDDIIDLFNCL 281

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.2 bits (219), Expect = 4e-18
 Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 4/161 (2%)

Query: 566 VIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNS 625
                  +   KIP  +    S   L L  N L         S  +L+ LDLS   +   
Sbjct: 11  TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 626 IPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLE 685
              +  +L  L  L L+ N            L  L +L      L       I ++++L+
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 686 MLNLSHNNLSDF-IPRCFEEMNGLLYIDISYNELHGPIPNS 725
            LN++HN +  F +P  F  +  L ++D+S N++       
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  210 bits (537), Expect = 5e-60
 Identities = 114/478 (23%), Positives = 195/478 (40%), Gaps = 37/478 (7%)

Query: 247 LGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYL 306
              L       L   + + ++     +L  ++ L+     +       +  L NL  +  
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINF 75

Query: 307 YTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSE 366
             N L+   P  + NL  L  + + +N+++   P  L NLTNL    L+ N ++   P  
Sbjct: 76  SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-- 129

Query: 367 IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQL 426
           + NL +L+ L+LS N +S     +L  LT+L  L    N +    P  + NL +L  L +
Sbjct: 130 LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDI 184

Query: 427 GDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNL 486
             NK+S+ IS  L  LT++  L   +N +S + P  LG L  L  L+L+ NQL+  I  L
Sbjct: 185 SSNKVSD-IS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGTL 239

Query: 487 RNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVS 546
            +LTNL  L L  N ++           KLT + L  N       S       L   +++
Sbjct: 240 ASLTNLTDLDLANNQIS--NLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELN 295

Query: 547 VNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL 606
            N +       I +   L  + L  N+I    P  +  L+ L +L    N++     S L
Sbjct: 296 ENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSL 349

Query: 607 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLS 666
            +L  + +L    N++S+  P  L NL ++  L L+   +            ++S  +  
Sbjct: 350 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV---NYKANVSIPNTV 404

Query: 667 HNFLGKEI-PSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIP 723
            N  G  I P+ I +  S    +++ N  S +        +  + I        G + 
Sbjct: 405 KNVTGALIAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  210 bits (537), Expect = 5e-60
 Identities = 113/496 (22%), Positives = 194/496 (39%), Gaps = 39/496 (7%)

Query: 200 GNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLR 259
           G L +  I    +  ++         L       LG   +  ++     +L  + TL   
Sbjct: 1   GPLGSATIT--QDTPINQIFT--DTALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQAD 54

Query: 260 NNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI 319
                S     +  L +L+ +    N+L    PL   NLT L  + +  N ++   P  +
Sbjct: 55  RLGIKS--IDGVEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--L 108

Query: 320 GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLS 379
            NL +L+GL L +N+++   P  L NLTNL    L  N++S    S +  L SL  L   
Sbjct: 109 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG 164

Query: 380 ENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSL 439
            N+++   P  L NLT L  L + SN +  S    +  L +L  L   +N++S+     L
Sbjct: 165 -NQVTDLKP--LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--L 217

Query: 440 GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNR 499
           G LT++  L+L  N L  +    L +L  LT L L++NQ+  ++  L  LT L  L+L  
Sbjct: 218 GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGA 274

Query: 500 NHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIG 559
           N ++            LT ++L+ N       S      NL    +  NNI       + 
Sbjct: 275 NQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI--SPVS 328

Query: 560 DSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSS 619
             ++L  +    N +     S +  L+++  L    NQ+     + L +L ++  L L+ 
Sbjct: 329 SLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQI--SDLTPLANLTRITQLGLND 384

Query: 620 NRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC 679
              +N+      N+   + +   T   I   P  +      +E D++ N           
Sbjct: 385 QAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLP-SYTNEVSY 441

Query: 680 NMRSLEMLNLSHNNLS 695
                  +       S
Sbjct: 442 TFSQPVTIGKGTTTFS 457

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  210 bits (537), Expect = 6e-60
 Identities = 121/452 (26%), Positives = 203/452 (44%), Gaps = 36/452 (7%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIG 152
             +   +     ++ ++  L              +  L+ L  +  S NQ +   P  + 
Sbjct: 34  TNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LK 87

Query: 153 HLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN 212
           +L+ +  + +  NQ++   P  +  L++L  L L +N +    P  L NLTNL  L L +
Sbjct: 88  NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 143

Query: 213 NSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIG 272
           N++S    S +  L SL  L+ GN     +    L NLT L+ L + +N  S    S + 
Sbjct: 144 NTISD--ISALSGLTSLQQLSFGNQV---TDLKPLANLTTLERLDISSNKVSD--ISVLA 196

Query: 273 NLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELAD 332
            L +L  L    N+++   P  LG LTNLD L L  N L       + +L +L+ L+LA+
Sbjct: 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 252

Query: 333 NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLG 392
           N++S+  P  L  LT L    L  N +S   P  +  L +L+NL+L+EN+L    P  + 
Sbjct: 253 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS 306

Query: 393 NLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYD 452
           NL NL  L L+ N +    P  + +L  L  L   +NK+S+    SL NLT++  L+   
Sbjct: 307 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGH 362

Query: 453 NALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGI 512
           N +S + P  L NL ++T L L+D     +  N +   ++     N        +     
Sbjct: 363 NQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPAT-ISD 419

Query: 513 HPKLTFIDLSHNN--FYGQISSDWGKCPNLGT 542
               T  D++ N   +  ++S  + +   +G 
Sbjct: 420 GGSYTEPDITWNLPSYTNEVSYTFSQPVTIGK 451

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  197 bits (502), Expect = 3e-55
 Identities = 114/471 (24%), Positives = 188/471 (39%), Gaps = 58/471 (12%)

Query: 255 TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGS 314
               ++   +         L       LG+  +  ++  +  +L  + TL      +   
Sbjct: 6   ATITQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-- 59

Query: 315 IPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLS 374
               +  L +L+ +  ++N+L+   P  L NLT L    +  N ++   P  + NL +L+
Sbjct: 60  SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT 115

Query: 375 NLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNS 434
            L L  N+++   P  L NLTNL  L L SNT+  S    +  L SL +L  G+      
Sbjct: 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFGNQVTDLK 171

Query: 435 ISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIR 494
               L NLT +  L +  N +S      L  L  L  L  ++NQ+   I  L  LTNL  
Sbjct: 172 ---PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DITPLGILTNLDE 225

Query: 495 LRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSL 554
           L LN N L  +I  +      LT +DL++N                          I +L
Sbjct: 226 LSLNGNQLK-DIG-TLASLTNLTDLDLANNQ-------------------------ISNL 258

Query: 555 PPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEY 614
            P +   ++L  + L AN I     S +  L++L  L L  NQL     S + +L  L Y
Sbjct: 259 AP-LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTY 313

Query: 615 LDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI 674
           L L  N +S+  P  + +L KL  L    N+ + ++   L  L +++ L   HN +    
Sbjct: 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNK-VSDVSS-LANLTNINWLSAGHNQISDLT 369

Query: 675 PSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 725
           P  + N+  +  L L+    ++        ++    +      L  P   S
Sbjct: 370 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATIS 418

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  206 bits (526), Expect = 1e-59
 Identities = 100/371 (26%), Positives = 161/371 (43%), Gaps = 26/371 (7%)

Query: 133 LKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLK 192
              L       +   P     L+      L K  ++  +      L S+ +L +    + 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 193 GSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTN 252
                 +  LTNL  L L+ N ++   P  + NL  L++L +G NK+  +    L NLTN
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTN 111

Query: 253 LDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLS 312
           L  LYL  ++ S   P  + NL  +  L LG N     +   L N+T L+ L +  + + 
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK 168

Query: 313 GSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKS 372
              P  I NL  L  L L  N++    P  L +LT+L  F  Y N ++   P  + N+  
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTR 222

Query: 373 LSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLS 432
           L++L +  NK++   P  L NL+ L  L + +N +  S    + +L  L  L +G N++S
Sbjct: 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQIS 278

Query: 433 NSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNL 492
           +     L NL+ +  L L +N L     E +G L  LT L LS N +   I  L +L+ +
Sbjct: 279 D--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT-DIRPLASLSKM 335

Query: 493 IRLRLNRNHLT 503
                    + 
Sbjct: 336 DSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  196 bits (501), Expect = 3e-56
 Identities = 101/370 (27%), Positives = 163/370 (44%), Gaps = 26/370 (7%)

Query: 181 LNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLC 240
              LA     +    P    +L       L   S++  +      L+S++ L +   K+ 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV- 56

Query: 241 GSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTN 300
            SI   +  LTNL+ L L  N  +   P  + NL  L+ L +G N++  +   +L NLTN
Sbjct: 57  ASIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTN 111

Query: 301 LDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLS 360
           L  LYL  +++S   P  + NL  +  L L  N   S +   L N+T L    + ++ + 
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK 168

Query: 361 GSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKS 420
              P  I NL  L +L L+ N++    P  L +LT+L     + N +    P  + N+  
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTR 222

Query: 421 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 480
           L  L++G+NK+++     L NL+ +T L +  N +S +    + +L KL ML +  NQ+ 
Sbjct: 223 LNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS 278

Query: 481 GSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNL 540
             I  L NL+ L  L LN N L     E  G    LT + LS N+              +
Sbjct: 279 -DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKM 335

Query: 541 GTFDVSVNNI 550
            + D +   I
Sbjct: 336 DSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  191 bits (487), Expect = 3e-54
 Identities = 85/371 (22%), Positives = 153/371 (41%), Gaps = 26/371 (7%)

Query: 253 LDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLS 312
             TL       +   P    +L       L +  +   +      L ++  L +    ++
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA 57

Query: 313 GSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKS 372
                 I  L +L  L L  N+++   P  L NL  L   Y+  N ++    S + NL +
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTN 111

Query: 373 LSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLS 432
           L  L L+E+ +S   P  L NLT +  L L +N  L  +   + N+  L  L + ++K+ 
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK 168

Query: 433 NSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNL 492
           +     + NLT +  L+L  N +  + P  L +L  L   T   NQ+   I  + N+T L
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT-DITPVANMTRL 223

Query: 493 IRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIG 552
             L++  N +T           +LT++++  N       +       L   +V  N I  
Sbjct: 224 NSLKIGNNKIT--DLSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQI-- 277

Query: 553 SLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQL 612
           S    + + SQL+ + L+ N +  +    IG L++L  L L +N +       L SL ++
Sbjct: 278 SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI--TDIRPLASLSKM 335

Query: 613 EYLDLSSNRLS 623
           +  D ++  + 
Sbjct: 336 DSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  183 bits (467), Expect = 2e-51
 Identities = 97/394 (24%), Positives = 172/394 (43%), Gaps = 50/394 (12%)

Query: 325 LSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLS 384
            + L      ++   P    +L       L K S++  +      L+S++ L ++  K++
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 385 GSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTH 444
            SI   +  LTNL  L L+ N +    P  + NL  L  L +G NK+++ IS +L NLT+
Sbjct: 58  -SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTN 111

Query: 445 MTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTC 504
           +  L L ++ +S + P  L NL K+  L L  N     +  L N+T L  L +  + +  
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK- 168

Query: 505 NISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQL 564
                      L  + L++N                          I  + P +   + L
Sbjct: 169 -DVTPIANLTDLYSLSLNYNQ-------------------------IEDISP-LASLTSL 201

Query: 565 HVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSN 624
           H      N I    P  +  ++ L  L +  N++     S L +L QL +L++ +N++S+
Sbjct: 202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD 257

Query: 625 SIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSL 684
               ++ +L KL  LN+ +NQ I +I + L  L  L+ L L++N LG E    I  + +L
Sbjct: 258 --INAVKDLTKLKMLNVGSNQ-ISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313

Query: 685 EMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
             L LS N+++D  P     ++ +   D +   +
Sbjct: 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  167 bits (425), Expect = 7e-46
 Identities = 81/351 (23%), Positives = 153/351 (43%), Gaps = 24/351 (6%)

Query: 373 LSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLS 432
            + L      ++   P    +L       L   ++   +      L+S+ +L +   K++
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 433 NSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNL 492
            SI   +  LT++  L L  N ++ + P  L NLVKLT L +  N++   I  L+NLTNL
Sbjct: 58  -SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISALQNLTNL 112

Query: 493 IRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIG 552
             L LN ++++           K+  ++L  N+    +S        L    V+ + +  
Sbjct: 113 RELYLNEDNIS--DISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKV-- 167

Query: 553 SLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQL 612
                I + + L+ + L+ N I     S +  L+SL       NQ+     + + ++ +L
Sbjct: 168 KDVTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQI--TDITPVANMTRL 223

Query: 613 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGK 672
             L + +N++++  P  L NL +L +L + TNQ I +I   ++ L  L  L++  N +  
Sbjct: 224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ-ISDIN-AVKDLTKLKMLNVGSNQISD 279

Query: 673 EIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIP 723
              S + N+  L  L L++N L +        +  L  + +S N +    P
Sbjct: 280 --ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  166 bits (423), Expect = 1e-45
 Identities = 76/312 (24%), Positives = 139/312 (44%), Gaps = 39/312 (12%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIG 152
            ++  I    I  ++ L+YL+L+ N  +   P  + NL  L  LY+  N+ +      + 
Sbjct: 54  EKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQ 107

Query: 153 HLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN 212
           +L+ +  L+L ++ +S   P  +  L+ +  L L +N    S    L N+T L  L +  
Sbjct: 108 NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTE 164

Query: 213 NSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIG 272
           + +    P  I NL  L SL+L  N++    PL   +LT+L       N  +   P  + 
Sbjct: 165 SKVKDVTP--IANLTDLYSLSLNYNQIEDISPL--ASLTSLHYFTAYVNQITDITP--VA 218

Query: 273 NLKSLSILELGENRLNGSIPLS--------------------LGNLTNLDTLYLYTNSLS 312
           N+  L+ L++G N++    PL+                    + +LT L  L + +N +S
Sbjct: 219 NMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQIS 278

Query: 313 GSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKS 372
               S + NL  L+ L L +N+L +     +G LTNL   +L +N ++   P  + +L  
Sbjct: 279 D--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSK 334

Query: 373 LSNLDLSENKLS 384
           + + D +   + 
Sbjct: 335 MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.3 bits (186), Expect = 1e-14
 Identities = 32/145 (22%), Positives = 63/145 (43%), Gaps = 10/145 (6%)

Query: 580 SEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYL 639
                L+  I+ +L++  +          L  +  L ++  +++ SI   +  L  L YL
Sbjct: 16  FPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYL 71

Query: 640 NLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 699
           NL+ NQ I +I   L  L+ L+ L +  N +     S + N+ +L  L L+ +N+SD  P
Sbjct: 72  NLNGNQ-ITDISP-LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP 127

Query: 700 RCFEEMNGLLYIDISYNELHGPIPN 724
                +  +  +++  N     +  
Sbjct: 128 --LANLTKMYSLNLGANHNLSDLSP 150

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  197 bits (504), Expect = 7e-57
 Identities = 57/343 (16%), Positives = 111/343 (32%), Gaps = 27/343 (7%)

Query: 103 IGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHL 162
             + S  + L    ++        +           +    + R      + +  +    
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETR 63

Query: 163 FKNQLSGPIPHEVGGLSSLN--ELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIP 220
               L       +   +      L L S  L    P     L++L  + +    L   +P
Sbjct: 64  TGRALKA-TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP 120

Query: 221 SEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSIL 280
             +     L +L L  N L  ++P  + +L  L  L +R     + +P  + +       
Sbjct: 121 DTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLAST------ 173

Query: 281 ELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIP 340
                            L NL +L L    +  S+P+ I NL++L  L++ ++ LS+ + 
Sbjct: 174 ---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LG 222

Query: 341 HYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAIL 400
             + +L  L    L   +   + P   G    L  L L +     ++P  +  LT L  L
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

Query: 401 YLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLT 443
            L     L  +P  I  L +   + +  +  +    H      
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  194 bits (494), Expect = 2e-55
 Identities = 58/338 (17%), Positives = 107/338 (31%), Gaps = 27/338 (7%)

Query: 151 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL 210
             H S  E L+   +    P    +                         N  N  I   
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETR 63

Query: 211 HNNSLSGSIPSEIGNLKS--LSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIP 268
              +L  +    + +       +L L +  L    P     L++L  + +        +P
Sbjct: 64  TGRALK-ATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLME-LP 120

Query: 269 SEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGL 328
             +     L  L L  N L  ++P S+ +L  L  L +        +P  + +       
Sbjct: 121 DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST------ 173

Query: 329 ELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIP 388
                            L NL +  L    +  S+P+ I NL++L +L +  + LS ++ 
Sbjct: 174 ---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALG 222

Query: 389 HSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLL 448
            ++ +L  L  L L   T L + P   G    L  L L D     ++   +  LT +  L
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

Query: 449 ALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNL 486
            L        +P  +  L    ++ +  +       + 
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  180 bits (459), Expect = 9e-51
 Identities = 61/395 (15%), Positives = 115/395 (29%), Gaps = 74/395 (18%)

Query: 241 GSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTN 300
           GS      + +  + LY + ++        +   +     +               N  N
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57

Query: 301 LDTLYLYTNSLSGSIPSEIGNLKS--LSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS 358
                    +L  +    + +        LEL    L    P     L++L    +    
Sbjct: 58  PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAG 115

Query: 359 LSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNL 418
           L   +P  +     L  L L+ N L  ++P S+ +L  L  L + +   L  +P  + + 
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 419 KSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 478
            +  E                  L ++  L L    +   +P  + NL  L  L + ++ 
Sbjct: 174 DASGEH---------------QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP 217

Query: 479 LQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCP 538
           L    P + +L  L  L                        DL                 
Sbjct: 218 LSALGPAIHHLPKLEEL------------------------DLRGCTA------------ 241

Query: 539 NLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL 598
                       + + PP  G  + L  + L     +  +P +I +L+ L KL LR    
Sbjct: 242 ------------LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289

Query: 599 FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNL 633
             +LPS +  L     + +  +  +          
Sbjct: 290 LSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  171 bits (435), Expect = 2e-47
 Identities = 57/323 (17%), Positives = 108/323 (33%), Gaps = 22/323 (6%)

Query: 385 GSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTH 444
           GS  H   + +    LY   +T L      +   +  +     D    +S      N  +
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNA---DRNRWHSAW-RQANSNN 57

Query: 445 MTLLALYDNALSGVIPEELGNL--VKLTMLTLSDNQLQGSIPN-LRNLTNLIRLRLNRNH 501
             +      AL     + L +        L L    L    P+    L++L  + ++   
Sbjct: 58  PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 502 LTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS 561
           L   + ++      L  + L+ N     + +       L    +     +  LP  +  +
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 562 S---------QLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQL 612
                      L  + L    I   +P+ I  L +L  L +R + L   L   +  L +L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231

Query: 613 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGK 672
           E LDL       + P   G    L  L L     +  +P+ + +L  L +LDL       
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 673 EIPSQICNMRSLEMLNLSHNNLS 695
            +PS I  + +  ++ +  +  +
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  160 bits (407), Expect = 1e-43
 Identities = 51/249 (20%), Positives = 94/249 (37%), Gaps = 19/249 (7%)

Query: 99  IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIE 158
            P Q   +S L+++ + +      +P  +   + L+ L L+ N     +P  I  L+ + 
Sbjct: 96  FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR 153

Query: 159 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGS 218
            L +        +P  +    +                     L NL  L L    +  S
Sbjct: 154 ELSIRACPELTELPEPLASTDA---------------SGEHQGLVNLQSLRLEWTGIR-S 197

Query: 219 IPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLS 278
           +P+ I NL++L SL + N+ L  ++   + +L  L+ L LR  +   + P   G    L 
Sbjct: 198 LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 279 ILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSS 338
            L L +     ++PL +  LT L+ L L        +PS I  L +   + +  +  +  
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316

Query: 339 IPHYLGNLT 347
             H      
Sbjct: 317 DQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  154 bits (391), Expect = 2e-41
 Identities = 50/328 (15%), Positives = 103/328 (31%), Gaps = 20/328 (6%)

Query: 408 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLV 467
           +GS      +      L    +         L                         N  
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSN 56

Query: 468 KLTMLTLSDNQLQGSIPNLRNLT--NLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNN 525
              + T +   L+ +   L + T    + L L    L     +       L  + +    
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 526 FYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGK- 584
              ++     +   L T  ++ N +  +LP  I   ++L  + + A   + ++P  +   
Sbjct: 116 L-MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 585 --------LSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKL 636
                   L +L  L L    +   LP+ + +L  L+ L + ++ LS ++  ++ +L KL
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231

Query: 637 HYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD 696
             L+L     ++  P        L  L L        +P  I  +  LE L+L       
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 697 FIPRCFEEMNGLLYIDISYNELHGPIPN 724
            +P    ++     I +  +       +
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQH 319

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  194 bits (496), Expect = 2e-54
 Identities = 124/525 (23%), Positives = 205/525 (39%), Gaps = 74/525 (14%)

Query: 195 IPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLD 254
           I P   + T L     H+++L+  +P E  N+KS +      ++   + P   G    + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 255 TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGS 314
              LR+              +    LEL    L+ S+P    +L +L       NSL+  
Sbjct: 62  VSRLRDCL-----------DRQAHELELNNLGLS-SLPELPPHLESLV---ASCNSLT-E 105

Query: 315 IPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLS 374
           +P    +LKSL         LS   P     L  L    +  N L   +P E+ N   L 
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPP----LLEYL---GVSNNQLE-KLP-ELQNSSFLK 156

Query: 375 NLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNS 434
            +D+  N L   +P    +L  +A      N  L  +P E+ NL  L  +   +N L   
Sbjct: 157 IIDVDNNSLK-KLPDLPPSLEFIAA----GNNQLEELP-ELQNLPFLTAIYADNNSLK-K 209

Query: 435 ISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIR 494
           +     +L     +   +N L      EL NL  LT +   +N L+ ++P+L    +L  
Sbjct: 210 LPDLPLSLES---IVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDL--PPSLEA 261

Query: 495 LRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSL 554
           L +  N+LT ++ E       LTF+D+S N      S      PNL   + S +N I SL
Sbjct: 262 LNVRDNYLT-DLPELPQ---SLTFLDVSEN----IFSGLSELPPNLYYLNAS-SNEIRSL 312

Query: 555 PPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEY 614
                    L  +++S N +I ++P+   +L    +LI   N L  ++P    +L   + 
Sbjct: 313 CDLP---PSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHL-AEVPELPQNL---KQ 361

Query: 615 LDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI 674
           L +  N L    P    ++  L   +        E+P   E   +L +L +  N L +E 
Sbjct: 362 LHVEYNPLR-EFPDIPESVEDLRMNSHLA-----EVP---ELPQNLKQLHVETNPL-REF 411

Query: 675 PSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719
           P       S+E L ++   + D      E  + L      ++  H
Sbjct: 412 PDIP---ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  192 bits (491), Expect = 8e-54
 Identities = 111/519 (21%), Positives = 188/519 (36%), Gaps = 74/519 (14%)

Query: 177 GLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN 236
             + L E    S+ L   +P    N+ +    Y   +    + P   G  + ++   L +
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 237 NKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLG 296
                              L L N    SS+P    +L+SL       N L   +P    
Sbjct: 68  CL-----------DRQAHELELNNLGL-SSLPELPPHLESLV---ASCNSLT-ELPELPQ 111

Query: 297 NLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYK 356
           +L +L        +LS   P        L  L +++N+L   +P  L N + L    +  
Sbjct: 112 SLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQL-EKLPE-LQNSSFLKIIDVDN 162

Query: 357 NSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIG 416
           NSL   +P    +L+    +    N+L   +P  L NL  L  +Y  +N  L  +P    
Sbjct: 163 NSLK-KLPDLPPSLEF---IAAGNNQLE-ELP-ELQNLPFLTAIYADNN-SLKKLPDLPL 215

Query: 417 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 476
           +L+    +  G+N L       L NL  +T +   +N L   +P+   +   L  L + D
Sbjct: 216 SLE---SIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LEALNVRD 266

Query: 477 NQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGK 536
           N L       ++LT L       + L+          P L +++ S N    +I S    
Sbjct: 267 NYLTDLPELPQSLTFLDVSENIFSGLSELP-------PNLYYLNASSN----EIRSLCDL 315

Query: 537 CPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRN 596
            P+L   +VS N +I  LP       +L  +  S NH + ++P     L     L +  N
Sbjct: 316 PPSLEELNVSNNKLI-ELPALPP---RLERLIASFNH-LAEVPELPQNLKQ---LHVEYN 367

Query: 597 QLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEK 656
            L  + P    S+      DL  N     +P    N   L  L++ TN  ++E P   + 
Sbjct: 368 PL-REFPDIPESVE-----DLRMNSHLAEVPELPQN---LKQLHVETNP-LREFP---DI 414

Query: 657 LIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS 695
              + +L ++   +             LE     H++  
Sbjct: 415 PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  192 bits (490), Expect = 1e-53
 Identities = 99/522 (18%), Positives = 187/522 (35%), Gaps = 74/522 (14%)

Query: 147 IPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLA 206
           I P+    ++++      + L+  +P E   + S  E     +  + + PP  G    +A
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 207 ILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSS 266
           +  L +              +    L L N  L  S+P    +L +L       NS  + 
Sbjct: 62  VSRLRDCL-----------DRQAHELELNNLGLS-SLPELPPHLESLV---ASCNSL-TE 105

Query: 267 IPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLS 326
           +P    +LKSL +       L+   P        L+ L +  N L   +P E+ N   L 
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQNSSFLK 156

Query: 327 GLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGS 386
            +++ +N L   +P    +L  +       N L   +P E+ NL  L+ +    N L   
Sbjct: 157 IIDVDNNSL-KKLPDLPPSLEFI---AAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-K 209

Query: 387 IPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMT 446
           +P    +L +   +   +N L      E+ NL  L  +   +N L  ++     +L  + 
Sbjct: 210 LPDLPLSLES---IVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALN 263

Query: 447 LLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNI 506
           +    DN L+  +PE   +L  L +     + L    PNL  L        + N +    
Sbjct: 264 VR---DNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLN------ASSNEIR--- 310

Query: 507 SESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHV 566
                + P L  +++S+N    ++       P L     S  N +  +P        L  
Sbjct: 311 -SLCDLPPSLEELNVSNN----KLIELPALPPRLERLIAS-FNHLAEVPELPQ---NLKQ 361

Query: 567 IDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSI 626
           + +  N +  + P     +       LR N    ++P    +   L+ L + +N L    
Sbjct: 362 LHVEYNPLR-EFPDIPESVED-----LRMNSHLAEVPELPQN---LKQLHVETNPLR-EF 411

Query: 627 PRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHN 668
           P    +   +  L +++ + +       E    L +    H+
Sbjct: 412 PDIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  187 bits (477), Expect = 7e-52
 Identities = 97/526 (18%), Positives = 183/526 (34%), Gaps = 74/526 (14%)

Query: 99  IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIE 158
           I P+  + + L+     S++ +  +P +  N+      Y + +++    PP  G    + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 159 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGS 218
              L                   +EL L +  L  S+P    +L +   L    NSL+  
Sbjct: 62  VSRLRDCL-----------DRQAHELELNNLGLS-SLPELPPHLES---LVASCNSLT-E 105

Query: 219 IPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLS 278
           +P    +LKSL         L    P        L+ L + NN     +P E+ N   L 
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQL-EKLP-ELQNSSFLK 156

Query: 279 ILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSS 338
           I+++  N L   +P    +L  +       N L   +P E+ NL  L+ +   +N L   
Sbjct: 157 IIDVDNNSLK-KLPDLPPSLEFIA---AGNNQLE-ELP-ELQNLPFLTAIYADNNSL-KK 209

Query: 339 IPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLA 398
           +P    +L ++       N L      E+ NL  L+ +    N L  ++P    +L  L 
Sbjct: 210 LPDLPLSLESI---VAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALN 263

Query: 399 ILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV 458
           +   +   L    P    +L  L   +   + LS           ++  L    N +   
Sbjct: 264 VRDNYLTDL----PELPQSLTFLDVSENIFSGLSELP-------PNLYYLNASSNEIR-S 311

Query: 459 IPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTF 518
           + +   +   L  L +S+N+L   +P L     L RL  + NHL   + E       L  
Sbjct: 312 LCDLPPS---LEELNVSNNKLI-ELPAL--PPRLERLIASFNHLA-EVPELPQ---NLKQ 361

Query: 519 IDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKI 578
           + + +N    +         +L      +N+ +  +P        L  + +  N +  + 
Sbjct: 362 LHVEYNPLR-EFPDIPESVEDL-----RMNSHLAEVPELPQ---NLKQLHVETNPLR-EF 411

Query: 579 PSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSN 624
           P     +     L +   ++         +  +LE      +   +
Sbjct: 412 PDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  167 bits (424), Expect = 9e-45
 Identities = 106/459 (23%), Positives = 173/459 (37%), Gaps = 77/459 (16%)

Query: 93  NQIFGIIPPQIGN-------------ISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLS 139
           ++     PP  G                +   L+L++   S ++P    +   L+ L  S
Sbjct: 44  SEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPH---LESLVAS 99

Query: 140 ANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSL 199
            N  +  +P     L  +   +     LS   P        L  L +++N L+    P L
Sbjct: 100 CNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLEKL--PEL 149

Query: 200 GNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLR 259
            N + L I+ + NNSL   +P    +L+ ++    GNN+L   +P  L NL  L  +Y  
Sbjct: 150 QNSSFLKIIDVDNNSLK-KLPDLPPSLEFIA---AGNNQLE-ELP-ELQNLPFLTAIYAD 203

Query: 260 NNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI 319
           NNS    +P    +L+S+     G N L       L NL  L T+Y   N L  ++P   
Sbjct: 204 NNSL-KKLPDLPLSLESIV---AGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLP 256

Query: 320 GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPS-------------E 366
            +L++L+   + DN L + +P    +LT L       + LS   P+              
Sbjct: 257 PSLEALN---VRDNYL-TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL 312

Query: 367 IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQL 426
                SL  L++S NKL   +P     L     L    N  L  +P    NLK   +L +
Sbjct: 313 CDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFN-HLAEVPELPQNLK---QLHV 364

Query: 427 GDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNL 486
             N L         ++       L  N+    +PE   N   L  L +  N L+   P++
Sbjct: 365 EYNPLR-EFPDIPESVED-----LRMNSHLAEVPELPQN---LKQLHVETNPLR-EFPDI 414

Query: 487 RNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNN 525
               ++  LR+N   +      +     KL      H++
Sbjct: 415 --PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  198 bits (504), Expect = 6e-53
 Identities = 123/543 (22%), Positives = 193/543 (35%), Gaps = 62/543 (11%)

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSI-PLFLGNLTN 252
            +P     L     L L  N +     S    L+ L  L LG+     +I      NL N
Sbjct: 18  QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN 74

Query: 253 LDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSI--PLSLGNLTNLDTLYLYTNS 310
           L  L L ++      P     L  L  L L    L+ ++       NL  L  L L  N 
Sbjct: 75  LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134

Query: 311 LSG-SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLT--NLAAFYLYKNSLSGSIPSEI 367
           +    +    G L SL  ++ + N++     H L  L    L+ F L  NSL   +  + 
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194

Query: 368 GN-LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQL 426
           G  +    N+ L    +SG       N   + I    SN +  S    +     +     
Sbjct: 195 GKCMNPFRNMVLEILDVSG-------NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247

Query: 427 GDNKLSNSISHSLGNLTHMTL--LALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP 484
           G + + +   ++   L   ++  L L    +  +       L  L +L L+ N++   I 
Sbjct: 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIA 306

Query: 485 N--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGT 542
           +     L NL  L L+ N L    S +F   PK+ +IDL  N+        +     L T
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366

Query: 543 FDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQL 602
            D+  N +       I     +  I LS N           KL +L K+ L         
Sbjct: 367 LDLRDNALT-----TIHFIPSIPDIFLSGN-----------KLVTLPKINL--------- 401

Query: 603 PSELGSLIQLEYLDLSSNRLSN-SIPRSLGNLVKLHYLNLSTNQFIQ-EIPIKLEKLIHL 660
                       + LS NRL N  I   L  +  L  L L+ N+F          +   L
Sbjct: 402 --------TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL 453

Query: 661 SELDLSHNFLGKEIPSQIC-----NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISY 715
            +L L  N L     +++C      +  L++L L+HN L+   P  F  +  L  + ++ 
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513

Query: 716 NEL 718
           N L
Sbjct: 514 NRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  185 bits (471), Expect = 7e-49
 Identities = 129/655 (19%), Positives = 233/655 (35%), Gaps = 98/655 (14%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQI 151
           N I  +       + +L+ L+L S     TI  +   NL  L+ L L +++    + P  
Sbjct: 34  NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDA 92

Query: 152 -GHLSYIEALHLFKNQLSGPI--PHEVGGLSSLNELALTSNFLKG-SIPPSLGNLTNLAI 207
              L ++  L L+   LS  +        L +L  L L+ N ++   + PS G L +L  
Sbjct: 93  FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152

Query: 208 LYLHNNSLSGSIPSEIGNL--KSLSSLALGNNKLCGSIPLFLGNLTN------LDTLYLR 259
           +   +N +      E+  L  K+LS  +L  N L   + +  G   N      L+ L + 
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212

Query: 260 NNSFSSSIPSEIGN------------LKSLSILELGENRLNGSIPLSLGNL--TNLDTLY 305
            N ++  I     N               +     G + +      +   L  +++  L 
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272

Query: 306 LYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPS 365
           L    +          LK L  L LA N+++         L NL    L  N L     S
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332

Query: 366 EIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQ 425
               L  ++ +DL +N ++     +   L  L  L L  N L       I  + S+ ++ 
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIF 387

Query: 426 LGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQG--SI 483
           L  NKL      +L                               ++ LS+N+L+    +
Sbjct: 388 LSGNKLVTLPKINL----------------------------TANLIHLSENRLENLDIL 419

Query: 484 PNLRNLTNLIRLRLNRNHLT-CNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGT 542
             L  + +L  L LN+N  + C+  ++   +P L  + L  N     +   W        
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM----LQLAWETELCWDV 475

Query: 543 FDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQL 602
           F+                 S L V+ L+ N++    P     L++L  L L  N+L    
Sbjct: 476 FE---------------GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520

Query: 603 PSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK-LEKLIHLS 661
            ++L +   LE LD+S N+L    P    +   L  L+++ N+FI E  +      ++ +
Sbjct: 521 HNDLPA--NLEILDISRNQLLAPNPDVFVS---LSVLDITHNKFICECELSTFINWLNHT 575

Query: 662 ELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYN 716
            + ++             ++  +   + S  +L        +E   L  +  S  
Sbjct: 576 NVTIAGPP---------ADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLF 621

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  167 bits (424), Expect = 7e-43
 Identities = 100/492 (20%), Positives = 174/492 (35%), Gaps = 58/492 (11%)

Query: 249 NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSI-PLSLGNLTNLDTLYLY 307
            L   + L L  N   +   S    L+ L +LELG      +I   +  NL NL  L L 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 308 TNSLSGSIPSEIGNLKSLSGLELADNELSSSI--PHYLGNLTNLAAFYLYKNSLSG-SIP 364
           ++ +    P     L  L  L L    LS ++    Y  NL  L    L KN +    + 
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLT--NLAILYLHSNTLLGSIPREIGNLKSLF 422
              G L SL ++D S N++     H L  L    L+   L +N+L   +  + G   + F
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 423 E-LQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ- 480
             + L    +S        N   + +   + NA+S      L     +       + ++ 
Sbjct: 202 RNMVLEILDVSG-------NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254

Query: 481 ---GSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKC 537
               +   L   +++  L L+   +    S  F     L  ++L++N             
Sbjct: 255 PDQNTFAGLAR-SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK------------ 301

Query: 538 PNLGTFDVSVNNIIGSLPPEI-GDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRN 596
                        I  +  E       L V++LS N +     S    L  +  + L++N
Sbjct: 302 -------------INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 597 QLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEK 656
            +          L +L+ LDL  N L+     ++  +  +  + LS N+ +      L K
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVT-----LPK 398

Query: 657 L-IHLSELDLSHNFL-GKEIPSQICNMRSLEMLNLSHNNLSDFIPRC-FEEMNGLLYIDI 713
           + +  + + LS N L   +I   +  +  L++L L+ N  S         E   L  + +
Sbjct: 399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458

Query: 714 SYNELHGPIPNS 725
             N L       
Sbjct: 459 GENMLQLAWETE 470

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  161 bits (409), Expect = 5e-41
 Identities = 99/484 (20%), Positives = 172/484 (35%), Gaps = 52/484 (10%)

Query: 255 TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGS 314
             + R  + +  +P     L +   L L  N +      S   L  L  L L +     +
Sbjct: 8   IAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 315 IPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSI--PSEIGNLK 371
           I  E   NL +L  L+L  +++    P     L +L    LY   LS ++       NLK
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 372 SLSNLDLSENKLSG-SIPHSLGNLTNLAILYLHSNTLLGSIPREIGNL--KSLFELQLGD 428
           +L+ LDLS+N++    +  S G L +L  +   SN +      E+  L  K+L    L  
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 429 NKLSNSISHSLGN-LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGS-IPNL 486
           N L + +S   G  +     + L    +SG       N   + +     N +  S   +L
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSG-------NGWTVDITGNFSNAISKSQAFSL 236

Query: 487 RNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVS 546
               +++      +++                 D   N F G   S      ++   D+S
Sbjct: 237 ILAHHIMGAGFGFHNIK----------------DPDQNTFAGLARS------SVRHLDLS 274

Query: 547 VNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL 606
              +             L V++L+ N I          L +L  L L  N L     S  
Sbjct: 275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334

Query: 607 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLS 666
             L ++ Y+DL  N ++    ++   L KL  L+L  N         +  +  + ++ LS
Sbjct: 335 YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLS 389

Query: 667 HNFLGKEIPSQICNMRSLEMLNLSHNNLSDF-IPRCFEEMNGLLYIDISYNELHGPIPNS 725
            N L   +P       +  +++LS N L +  I      +  L  + ++ N         
Sbjct: 390 GNKL-VTLPKINL---TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS-CSGD 444

Query: 726 TAFS 729
              S
Sbjct: 445 QTPS 448

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.1 bits (164), Expect = 2e-11
 Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 7/123 (5%)

Query: 610 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK-LEKLIHLSELDLSHN 668
                       L+  +P+ L        L LS N  I+ +       L  L  L+L   
Sbjct: 4   FDGRIAFYRFCNLT-QVPQVLNTT---ERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQ 58

Query: 669 FLGKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTA 727
           +    I  +   N+ +L +L+L  + +    P  F+ +  L  + + +  L   +     
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 728 FSD 730
           F +
Sbjct: 119 FRN 121

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  187 bits (476), Expect = 5e-51
 Identities = 103/498 (20%), Positives = 186/498 (37%), Gaps = 36/498 (7%)

Query: 248 GNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLY 307
           G    + +L L  N  +     ++    +L +L L  +R+N     +  +L +L+ L L 
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82

Query: 308 TNSLSGSIPSEIGNLKSLSGLELADNELSS-SIPHYLGNLTNLAAFYLYKNSLSGSIPSE 366
            N LS    S  G L SL  L L  N   +  +     NLTNL    +        I   
Sbjct: 83  DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 367 -IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQ 425
               L SL+ L++    L      SL ++ ++  L LH +     +      L S+  L+
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202

Query: 426 LGDNKLSNSISHSLGNLTHMTLLALYDNALSGV-------IPEELGNLVKLTMLTLSDNQ 478
           L D  L+      L      + +       S +       + + L  +++L+ +   D  
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 479 LQG----------SIPNLRNL--TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 526
           L G           +  L  +    + RL + + +L  ++S  + +  K+  I + ++  
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

Query: 527 YGQISSDWGKCPNLGTFDVSVNNIIGSLPPE---IGDSSQLHVIDLSANHI--IGKIPSE 581
           +    S      +L   D+S N ++          G    L  + LS NH+  + K    
Sbjct: 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382

Query: 582 IGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNL 641
           +  L +L  L + RN     +P       ++ +L+LSS  +   +         L  L++
Sbjct: 383 LLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDV 438

Query: 642 STNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRC 701
           S N  +    + L +   L EL +S N L K +P        L ++ +S N L       
Sbjct: 439 SNNN-LDSFSLFLPR---LQELYISRNKL-KTLPD-ASLFPVLLVMKISRNQLKSVPDGI 492

Query: 702 FEEMNGLLYIDISYNELH 719
           F+ +  L  I +  N   
Sbjct: 493 FDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  172 bits (438), Expect = 5e-46
 Identities = 101/538 (18%), Positives = 183/538 (34%), Gaps = 72/538 (13%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQI 151
           N+I  I    +   + L+ L L S+  + TI      +L  L+ L LS N  S       
Sbjct: 36  NKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94

Query: 152 GHLSYIEALHLFKNQLSG-PIPHEVGGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILY 209
           G LS ++ L+L  N      +      L++L  L + +      I       LT+L  L 
Sbjct: 95  GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154

Query: 210 LHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPS 269
           +   SL       + +++ +  L L  ++    + +F   L+++  L LR+ + +    S
Sbjct: 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS 214

Query: 270 EIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLE 329
            +   +  S ++    R +     S   L  L    L  + +              +   
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE---------FDDCTLNG 265

Query: 330 LADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPH 389
           L   + + S    +  L  +                      ++  L + +  L   +  
Sbjct: 266 L--GDFNPSESDVVSELGKV-------------------ETVTIRRLHIPQFYLFYDLST 304

Query: 390 SLGNLTNLAILYLHSNTLLGSIPREIG-NLKSLFELQLGDNKLSNSISHSLGNLTHMTLL 448
               L  +  + +  N+ +  +P     +LKSL  L L +N +      +          
Sbjct: 305 VYSLLEKVKRITV-ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN---------- 353

Query: 449 ALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN----LRNLTNLIRLRLNRNHLTC 504
                          G    L  L LS N L+ S+      L  L NL  L ++RN    
Sbjct: 354 -----------SACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH- 400

Query: 505 NISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQL 564
            + +S     K+ F++LS                 L   DVS NN + S    +    +L
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIR---VVKTCIPQTLEVLDVS-NNNLDSFSLFL---PRL 453

Query: 565 HVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRL 622
             + +S N +  K   +      L+ + + RNQL          L  L+ + L +N  
Sbjct: 454 QELYISRNKL--KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  155 bits (393), Expect = 5e-40
 Identities = 84/446 (18%), Positives = 168/446 (37%), Gaps = 39/446 (8%)

Query: 87  INLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSG-TIPPQIGNLSMLKFLYLSANQFSG 145
           ++L++ N +  +     G +S LKYL+L  N +    +     NL+ L+ L +   +   
Sbjct: 79  LDLSD-NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137

Query: 146 RIPPQ-IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTN 204
            I       L+ +  L +    L       +  +  ++ L L  +     +      L++
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197

Query: 205 LAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL----------CGSIPLFLGNLTNLD 254
           +  L L + +L+    S +   +  S +     +              +  ++  L+ ++
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 255 TLYLRNNSFSSSIPSEIGNLK--------SLSILELGENRLNGSIPLSLGNLTNLDTLYL 306
                 N      PSE   +         ++  L + +  L   +      L  +  + +
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317

Query: 307 YTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHY---LGNLTNLAAFYLYKNSLS--G 361
             + +     S   +LKSL  L+L++N +           G   +L    L +N L    
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSL 421
                +  LK+L++LD+S N     +P S      +  L L S  +   +   I   ++L
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI-RVVKTCI--PQTL 433

Query: 422 FELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQG 481
             L + +N L  S S  L  L     L +  N L  +   +      L ++ +S NQL+ 
Sbjct: 434 EVLDVSNNNLD-SFSLFLPRLQE---LYISRNKLKTL--PDASLFPVLLVMKISRNQLK- 486

Query: 482 SIPN--LRNLTNLIRLRLNRNHLTCN 505
           S+P+     LT+L ++ L+ N   C+
Sbjct: 487 SVPDGIFDRLTSLQKIWLHTNPWDCS 512

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  131 bits (330), Expect = 5e-32
 Identities = 61/383 (15%), Positives = 128/383 (33%), Gaps = 38/383 (9%)

Query: 354 LYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPR 413
               S + SIPS +    ++ +LDLS NK++      L    NL +L L S+ +      
Sbjct: 12  GRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68

Query: 414 EIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV-IPEELGNLVKLTML 472
              +L SL  L L DN LS+  S   G L+ +  L L  N    + +     NL  L  L
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

Query: 473 TLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQI 530
            + + +    I       LT+L  L +    L    S+S      +  + L  +      
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE----- 183

Query: 531 SSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEIGKLSSLI 589
                                  L     D  S +  ++L   ++     S +       
Sbjct: 184 --------------------SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223

Query: 590 KLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQE 649
            +     +           L++L    L  + +         +       + + ++    
Sbjct: 224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGDFNPSESDVV 277

Query: 650 IPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLL 709
             +   + + +  L +   +L  ++ +    +  ++ + + ++ +        + +  L 
Sbjct: 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337

Query: 710 YIDISYNELHGPIPNSTAFSDAL 732
           ++D+S N +      ++A   A 
Sbjct: 338 FLDLSENLMVEEYLKNSACKGAW 360

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.2 bits (198), Expect = 1e-15
 Identities = 35/160 (21%), Positives = 62/160 (38%), Gaps = 5/160 (3%)

Query: 562 SQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNR 621
               V D  +      IPS +   +++  L L  N++      +L +   L+ L L S+R
Sbjct: 5   DASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 622 LSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGK-EIPSQICN 680
           ++     +  +L  L +L+LS N            L  L  L+L  N      + S   N
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 681 MRSLEMLNLSHNNLSDFIPR-CFEEMNGLLYIDISYNELH 719
           + +L+ L + +      I R  F  +  L  ++I    L 
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  177 bits (451), Expect = 3e-47
 Identities = 89/450 (19%), Positives = 168/450 (37%), Gaps = 50/450 (11%)

Query: 202 LTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNN 261
               A+L +  + L+ ++P  +     +++L + +N L  S+P     L  L+   +  N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNL-TSLPALPPELRTLE---VSGN 91

Query: 262 SFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGN 321
              +S+P     L  LSI       L           + L  L+++ N L+ S+P     
Sbjct: 92  QL-TSLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLT-SLPVLPPG 142

Query: 322 LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSEN 381
           L+ LS   ++DN+L +S+P     L  L   + Y N L+ S+P     L+    L +S+N
Sbjct: 143 LQELS---VSDNQL-ASLPALPSELCKL---WAYNNQLT-SLPMLPSGLQE---LSVSDN 191

Query: 382 KLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN 441
           +L+ S+P     L  L          L S+P     LK   EL +  N+L+ S+      
Sbjct: 192 QLA-SLPTLPSELYKLWAYNNR----LTSLPALPSGLK---ELIVSGNRLT-SLPVLPSE 242

Query: 442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRN 500
           L     L +  N L+  +P        L  L++  NQL   +P +L +L++   + L  N
Sbjct: 243 LKE---LMVSGNRLTS-LPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294

Query: 501 HLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGD 560
            L+     +     ++T              +            ++  + +  +P   G+
Sbjct: 295 PLS---ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL--VPAREGE 349

Query: 561 SSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSN 620
            +      +          S      S  +  ++      Q+ S L  L + E L  ++ 
Sbjct: 350 PAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEALRANTF 409

Query: 621 RLSNSIPRSLGNLVKLHYLNLSTNQFIQEI 650
            ++     S  + V      +   Q +   
Sbjct: 410 AMATEATSSCEDRVTFFLHQMKNVQLVHNA 439

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  173 bits (439), Expect = 1e-45
 Identities = 80/371 (21%), Positives = 140/371 (37%), Gaps = 46/371 (12%)

Query: 107 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQ 166
           +    L++  +  + T+P  +     +  L +  N  +  +P     L     L +  NQ
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLPALPPELRT---LEVSGNQ 92

Query: 167 LSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNL 226
           L+  +P    GL  L+  +         +P     L     L++  N L+ S+P     L
Sbjct: 93  LTS-LPVLPPGLLELSIFSNPLT----HLPALPSGLCK---LWIFGNQLT-SLPVLPPGL 143

Query: 227 KSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENR 286
           + LS   + +N+L  S+P     L     L+  NN   +S+P     L+ LS   + +N+
Sbjct: 144 QELS---VSDNQL-ASLPALPSELCK---LWAYNNQL-TSLPMLPSGLQELS---VSDNQ 192

Query: 287 LNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNL 346
           L  S+P     L  L       N L+ S+P+    LK L    ++ N L +S+P     L
Sbjct: 193 LA-SLPTLPSELYKLWAYN---NRLT-SLPALPSGLKELI---VSGNRL-TSLPVLPSEL 243

Query: 347 TNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNT 406
             L    +  N L+ S+P     L S   L +  N+L+  +P SL +L++   + L  N 
Sbjct: 244 KEL---MVSGNRLT-SLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGN- 294

Query: 407 LLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNL 466
            L     +     +      G   +   ++ +        L     + L      E    
Sbjct: 295 PLSERTLQALREITSAPGYSG-PIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPA 353

Query: 467 VKLTMLTLSDN 477
            +  M    DN
Sbjct: 354 DRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  163 bits (414), Expect = 2e-42
 Identities = 82/365 (22%), Positives = 139/365 (38%), Gaps = 50/365 (13%)

Query: 99  IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIE 158
           +P  +     +  L +  N+ + ++P     L   + L +S NQ +  +P     L  + 
Sbjct: 55  LPDCLPA--HITTLVIPDNNLT-SLPALPPEL---RTLEVSGNQLT-SLPVLPPGLLELS 107

Query: 159 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGS 218
                   L           S L +L +  N L  S+P     L  L    + +N L+ S
Sbjct: 108 IFSNPLTHLPA-------LPSGLCKLWIFGNQLT-SLPVLPPGLQEL---SVSDNQLA-S 155

Query: 219 IPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLS 278
           +P+    L  L      NN+L  S+P+    L  L    + +N  +S +P+    L  L 
Sbjct: 156 LPALPSELCKLW---AYNNQL-TSLPMLPSGLQELS---VSDNQLAS-LPTLPSELYKLW 207

Query: 279 ILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSS 338
                 NRL  S+P     L     L +  N L+ S+P     LK L    ++ N L+S 
Sbjct: 208 AYN---NRLT-SLPALPSGLK---ELIVSGNRLT-SLPVLPSELKELM---VSGNRLTS- 255

Query: 339 IPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLA 398
           +P     L +L    +Y+N L+  +P  + +L S + ++L  N LS     +L  +T+  
Sbjct: 256 LPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAP 311

Query: 399 ILY---LHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSIS----HSLGNLTHMTLLALY 451
                 +  +    S PRE   L       L   +          H  G   +    +L+
Sbjct: 312 GYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLF 371

Query: 452 DNALS 456
            + LS
Sbjct: 372 LDRLS 376

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  156 bits (397), Expect = 3e-40
 Identities = 84/419 (20%), Positives = 142/419 (33%), Gaps = 69/419 (16%)

Query: 275 KSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNE 334
           +  +  E    R      +          L +  + L+ ++P  +     ++ L + DN 
Sbjct: 16  RRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNN 72

Query: 335 LSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNL 394
           L +S+P     L  L    +  N L+ S+P     L  LS        L           
Sbjct: 73  L-TSLPALPPELRTL---EVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL-------P 120

Query: 395 TNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNA 454
           + L  L++  N  L S+P     L+   EL + DN+L+ S+      L     L  Y+N 
Sbjct: 121 SGLCKLWIFGN-QLTSLPVLPPGLQ---ELSVSDNQLA-SLPALPSELCK---LWAYNNQ 172

Query: 455 LSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHP 514
           L+  +P     L +   L++SDNQL  S+P L   + L +L    N LT  +        
Sbjct: 173 LT-SLPMLPSGLQE---LSVSDNQLA-SLPTL--PSELYKLWAYNNRLTS-LPALPS--- 221

Query: 515 KLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHI 574
            L  + +S N                          + SLP       +L  + +S N +
Sbjct: 222 GLKELIVSGNR-------------------------LTSLPVLPS---ELKELMVSGNRL 253

Query: 575 IGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLV 634
              +P        L+ L + RNQL  +LP  L  L     ++L  N LS    ++L  + 
Sbjct: 254 T-SLPMLPS---GLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308

Query: 635 KLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNN 693
                +    +F         +      L  +   +      +        M     N 
Sbjct: 309 SAPGYSGPIIRF-DMAGASAPRETRALHLAAADWLVPARE-GEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  141 bits (356), Expect = 4e-35
 Identities = 70/336 (20%), Positives = 128/336 (38%), Gaps = 67/336 (19%)

Query: 370 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDN 429
               + L++ E+ L+ ++P  L    ++  L +  N L  S+P     L++L   ++  N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPELRTL---EVSGN 91

Query: 430 KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNL 489
           +L++                         +P     L++L++ +     L      L  L
Sbjct: 92  QLTS-------------------------LPVLPPGLLELSIFSNPLTHLPALPSGLCKL 126

Query: 490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 549
                  +  N LT ++         L  + +S N    Q++S       L       NN
Sbjct: 127 W------IFGNQLT-SLPVLPP---GLQELSVSDN----QLASLPALPSELCKLWAY-NN 171

Query: 550 IIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSL 609
            + SLP        L  + +S N +   +P+   +L    KL    N+L   LP+     
Sbjct: 172 QLTSLPMLPS---GLQELSVSDNQLA-SLPTLPSELY---KLWAYNNRL-TSLPALPSG- 222

Query: 610 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNF 669
             L+ L +S NRL+ S+P     L +   L +S N+ +  +P        L  L +  N 
Sbjct: 223 --LKELIVSGNRLT-SLPVLPSELKE---LMVSGNR-LTSLP---MLPSGLLSLSVYRNQ 272

Query: 670 LGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEM 705
           L   +P  + ++ S   +NL  N LS+   +   E+
Sbjct: 273 L-TRLPESLIHLSSETTVNLEGNPLSERTLQALREI 307

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  171 bits (435), Expect = 4e-46
 Identities = 71/462 (15%), Positives = 146/462 (31%), Gaps = 25/462 (5%)

Query: 171 IPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLS 230
           I       +      +T + LK ++     +  N+  L L  N LS    +++     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 231 SLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGS 290
            L L +N L  ++   L +L+ L TL L NN        E+    S+  L    N ++  
Sbjct: 62  LLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR- 113

Query: 291 IPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS-SIPHYLGNLTNL 349
             +S         +YL  N ++     + G    +  L+L  NE+ + +      +   L
Sbjct: 114 --VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 350 AAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLG 409
               L  N +   +  ++     L  LDLS NKL+  +     +   +  + L +N  L 
Sbjct: 172 EHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN-KLV 227

Query: 410 SIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKL 469
            I + +   ++L    L  N      +       +  +  +    +  +  +        
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 470 TMLTLSDNQLQG-SIPNLRNLTNLIRLRLNRNHLTCN----ISESFGIHPKLTFIDLSHN 524
           T+        +    P    L  L R          +    +        +   ID    
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346

Query: 525 NFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIG--KIPSEI 582
            +   I     +     T +     +   +       ++L      A   I       E 
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQ 406

Query: 583 GKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSN 624
             L  L  ++ R  +++  +  +      +   D+  ++ + 
Sbjct: 407 SPLQLLRAIVKRYEEMY--VEQQSVQNNAIRDWDMYQHKETQ 446

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  169 bits (430), Expect = 3e-45
 Identities = 65/481 (13%), Positives = 141/481 (29%), Gaps = 35/481 (7%)

Query: 218 SIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSL 277
           +I     N        + ++ L  ++     +  N+  L L  N  S    +++     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 278 SILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS 337
            +L L  N L  ++ L   +L+ L TL L  N +      E+    S+  L  A+N +S 
Sbjct: 61  ELLNLSSNVLYETLDL--ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

Query: 338 SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSG-SIPHSLGNLTN 396
                     N+   YL  N ++     + G    +  LDL  N++   +      +   
Sbjct: 114 VSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 397 LAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALS 456
           L  L L  N  +  +  ++     L  L L  NKL+  +     +   +T ++L +N L 
Sbjct: 171 LEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 457 GVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKL 516
            +I + L     L    L  N             N     + +  +     ++       
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 517 TFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIG 576
           T                               + + +L        +  ++    +    
Sbjct: 287 TLGHYGAYC--------------CEDLPAPFADRLIAL-----KRKEHALLSGQGSET-E 326

Query: 577 KIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKL 636
           ++  E    +   ++   + Q    +            L+     L   +        +L
Sbjct: 327 RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386

Query: 637 HYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD 696
                     I+      E+        +   +    +  Q     ++   ++  +  + 
Sbjct: 387 DGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQ 446

Query: 697 F 697
            
Sbjct: 447 L 447

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  168 bits (428), Expect = 4e-45
 Identities = 66/429 (15%), Positives = 128/429 (29%), Gaps = 45/429 (10%)

Query: 103 IGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHL 162
             N ++ K   ++ +S    +     +   +K L LS N  S      +   + +E L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 163 FKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSE 222
             N L                               L +L+ L  L L+NN +      E
Sbjct: 66  SSNVLYE--------------------------TLDLESLSTLRTLDLNNNYV-----QE 94

Query: 223 IGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILEL 282
           +    S+ +L   NN +   +            +YL NN  +     + G    +  L+L
Sbjct: 95  LLVGPSIETLHAANNNI-SRVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 283 GENRLNG-SIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPH 341
             N ++  +      +   L+ L L  N +   +  ++     L  L+L+ N+L + +  
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKL-AFMGP 208

Query: 342 YLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILY 401
              +   +    L  N L   I   +   ++L + DL  N              N  +  
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQT 266

Query: 402 LHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSG---- 457
           +   T+     +             G     +  +     L  +        +  G    
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE 326

Query: 458 VIPEELGNLVKLTMLTLSDNQLQGSIPNL-RNLTNLIRLRLNRNHLTCNISESFGIHPKL 516
            +  E  N  +   +     Q +  I  +       I L   +  L   +S     H +L
Sbjct: 327 RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386

Query: 517 TFIDLSHNN 525
                    
Sbjct: 387 DGTLQQAVG 395

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  167 bits (424), Expect = 1e-44
 Identities = 68/483 (14%), Positives = 151/483 (31%), Gaps = 45/483 (9%)

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 253
           +I     N     I  + ++SL  ++ S   +  ++  L L  N L       L   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 254 DTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG 313
           + L L +N        ++ +L +L  L+L  N +       L    +++TL+   N++S 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 314 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG-SIPSEIGNLKS 372
            +       +    + LA+N+++       G  + +    L  N +   +      +  +
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 373 LSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLS 432
           L +L+L  N +   +   +     L  L L SN  L  +  E  +   +  + L +NKL 
Sbjct: 171 LEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLV 227

Query: 433 NSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNL 492
                                     I + L     L    L  N             N 
Sbjct: 228 L-------------------------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 493 IRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSV----N 548
               + +  +     ++       T             +    +   L   + ++     
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322

Query: 549 NIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGS 608
           +    L  E  + ++   ID         I     +  + I L  ++  L  Q+ +   +
Sbjct: 323 SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

Query: 609 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQE-IPIKLEKLIHLSELDLSH 667
             +L+     +      +  +      L  L     ++ +  +  +  +   + + D+  
Sbjct: 383 HAELDGTLQQAVGQ-IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQ 441

Query: 668 NFL 670
           +  
Sbjct: 442 HKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  165 bits (420), Expect = 5e-44
 Identities = 61/419 (14%), Positives = 121/419 (28%), Gaps = 25/419 (5%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIG 152
           + +   +     +   +K LDLS N  S      +   + L+ L LS+N         + 
Sbjct: 20  SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLE 77

Query: 153 HLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN 212
            LS +  L L  N +      E+    S+  L   +N +   +  S         +YL N
Sbjct: 78  SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCS--RGQGKKNIYLAN 129

Query: 213 NSLSGSIPSEIGNLKSLSSLALGNNKLCG-SIPLFLGNLTNLDTLYLRNNSFSSSIPSEI 271
           N ++     + G    +  L L  N++   +      +   L+ L L+ N     +  ++
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDVKGQV 188

Query: 272 GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELA 331
                L  L+L  N+L   +     +   +  + L  N L   I   +   ++L   +L 
Sbjct: 189 -VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245

Query: 332 DNELSS-SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHS 390
            N     ++  +      +    + K ++              +                
Sbjct: 246 GNGFHCGTLRDFFSKNQRVQ--TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

Query: 391 LGNLTNLAILYLHSNTL----LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMT 446
              L  L        +        +  E  N     E+     +    I           
Sbjct: 304 ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKI 363

Query: 447 LLALYDNALSGVIPEELGNLVKLTMLT---LSDNQLQGSIPNLRNLTNLIRLRLNRNHL 502
            L     AL   +        +L       +   +LQ +      L  L  +      +
Sbjct: 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEM 422

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  161 bits (410), Expect = 1e-42
 Identities = 66/443 (14%), Positives = 126/443 (28%), Gaps = 46/443 (10%)

Query: 290 SIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNL 349
           +I     N        +  +SL  ++ S   +  ++  L+L+ N LS      L   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 350 AAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLG 409
               L  N L      ++ +L +L  LDL+ N +       L    ++  L+  +N  + 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANN-NIS 112

Query: 410 SIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV-IPEELGNLVK 468
            +       +    + L +NK++       G  + +  L L  N +  V   E   +   
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 469 LTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG 528
           L  L L  N +   +        L  L L+ N L   +   F     +T+I L +N    
Sbjct: 171 LEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK--- 225

Query: 529 QISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSL 588
                                 +  +   +  S  L   DL  N              + 
Sbjct: 226 ----------------------LVLIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQ 262

Query: 589 IKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQF-- 646
               + +  +                    +    +        L+ L     +      
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322

Query: 647 --IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFE- 703
              + +  + E      E+D         I       ++   L      L + +      
Sbjct: 323 SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

Query: 704 --EMNGLLYIDISYNELHGPIPN 724
             E++G L   +   EL      
Sbjct: 383 HAELDGTLQQAVGQIELQHATEE 405

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  155 bits (392), Expect = 2e-40
 Identities = 61/419 (14%), Positives = 130/419 (31%), Gaps = 47/419 (11%)

Query: 314 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 373
           +I     N       ++ D+ L  ++     +  N+    L  N LS    +++     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 374 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 433
             L+LS N L       L +L+ L  L L++N +     +E+    S+  L   +N +S 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113

Query: 434 SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTN 491
                     +   + L +N ++ +   + G   ++  L L  N++          +   
Sbjct: 114 VSCSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 492 LIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNII 551
           L  L L  N +  ++        KL  +DLS N                          +
Sbjct: 171 LEHLNLQYNFIY-DVKGQVVF-AKLKTLDLSSNK-------------------------L 203

Query: 552 GSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL-FGQLPSELGSLI 610
             + PE   ++ +  I L  N ++  I   +    +L    LR N    G L        
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 611 QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFL 670
           +++ +      +     ++          +              ++LI L   + +    
Sbjct: 263 RVQTVAK--QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSG 320

Query: 671 G----KEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 725
                + +  +  N      ++         I +        + ++     L   + N 
Sbjct: 321 QGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  161 bits (409), Expect = 3e-43
 Identities = 79/386 (20%), Positives = 147/386 (38%), Gaps = 26/386 (6%)

Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKS 420
            I S +       ++ +               L N  I+   ++T+   +P  +  + + 
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQ 70

Query: 421 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 480
           +  L L D ++    +++      +  L +  NA+  + P    N+  LT+L L  N L 
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 481 GSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISS-DWGKC 537
            S+P     N   L  L ++ N+L     ++F     L  + LS N    +++  D    
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN----RLTHVDLSLI 185

Query: 538 PNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQ 597
           P+L   +VS N +       +     +  +D S N I   +   +     L  L L+ N 
Sbjct: 186 PSLFHANVSYNLL-----STLAIPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHNN 237

Query: 598 LFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKL 657
           L     + L +   L  +DLS N L   +      + +L  L +S N+ +  + +  + +
Sbjct: 238 L--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPI 294

Query: 658 IHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNE 717
             L  LDLSHN L   +         LE L L HN++   +       + L  + +S+N+
Sbjct: 295 PTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHND 350

Query: 718 LHGPIPNSTAFSDALMEALQGNEGLC 743
                     F +    A+   +  C
Sbjct: 351 WD-CNSLRALFRNVARPAVDDADQHC 375

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  150 bits (381), Expect = 1e-39
 Identities = 81/411 (19%), Positives = 148/411 (36%), Gaps = 49/411 (11%)

Query: 99  IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI-GHLSYI 157
           I   +        + +   +       +   L+  K +    +    ++P  +      +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 158 EALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPS-LGNLTNLAILYLHNNSLS 216
           E L+L   Q+     +      ++ +L +  N ++  +PP    N+  L +L L  N LS
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 130

Query: 217 GSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLK 275
            S+P  I  N   L++L++ NN L           T+L  L L +N   + +   +  + 
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIP 186

Query: 276 SLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNEL 335
           SL    +  N L+     +L     ++ L    NS++  +   +     L+ L+L  N  
Sbjct: 187 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHN-- 236

Query: 336 SSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLT 395
                    NLT+ A                  N   L  +DLS N+L   + H    + 
Sbjct: 237 ---------NLTDTAWL---------------LNYPGLVEVDLSYNELEKIMYHPFVKMQ 272

Query: 396 NLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNAL 455
            L  LY+ +N  L ++      + +L  L L  N L   +  +      +  L L  N++
Sbjct: 273 RLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330

Query: 456 SGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNI 506
             +   +L     L  LTLS N             N+ R  ++     C I
Sbjct: 331 VTL---KLSTHHTLKNLTLSHNDWD-CNSLRALFRNVARPAVDDADQHCKI 377

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  149 bits (379), Expect = 2e-39
 Identities = 83/437 (18%), Positives = 147/437 (33%), Gaps = 70/437 (16%)

Query: 211 HNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSE 270
                   I S +        + +               L N   +  +N++      + 
Sbjct: 5   PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL 64

Query: 271 IGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLE 329
           + + + + +L L + ++      +      +  LY+  N++   +P  +  N+  L+ L 
Sbjct: 65  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 123

Query: 330 LADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLSGSIP 388
           L  N+LS                         S+P  I  N   L+ L +S N L     
Sbjct: 124 LERNDLS-------------------------SLPRGIFHNTPKLTTLSMSNNNLERIED 158

Query: 389 HSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLL 448
            +    T+L  L L SN  L  +   +  + SLF   +  N LS     +L     +  L
Sbjct: 159 DTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEEL 210

Query: 449 ALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISE 508
               N+++ V        V+LT+L L  N L      L N   L+ + L+ N L   +  
Sbjct: 211 DASHNSINVV---RGPVNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYH 266

Query: 509 SFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVID 568
            F    +L  + +S+N                          + +L         L V+D
Sbjct: 267 PFVKMQRLERLYISNNR-------------------------LVALNLYGQPIPTLKVLD 301

Query: 569 LSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLS-NSIP 627
           LS NH +  +     +   L  L L  N +   L   L +   L+ L LS N    NS+ 
Sbjct: 302 LSHNH-LLHVERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHNDWDCNSLR 357

Query: 628 RSLGNLVKLHYLNLSTN 644
               N+ +    +   +
Sbjct: 358 ALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  137 bits (348), Expect = 2e-35
 Identities = 72/376 (19%), Positives = 135/376 (35%), Gaps = 50/376 (13%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQI 151
           + +  +    + +  +++ L+L+       I          ++ LY+  N     +PP +
Sbjct: 55  STMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHV 112

Query: 152 GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYL 210
                                     +  L  L L  N L  S+P  +  N   L  L +
Sbjct: 113 FQ-----------------------NVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSM 148

Query: 211 HNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPS 269
            NN+L   I  +      SL +L L +N+L   +   L  + +L    +  N  S+    
Sbjct: 149 SNNNLE-RIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNLLST---- 200

Query: 270 EIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLE 329
            +    ++  L+   N +N    +       L  L L  N+L+    + + N   L  ++
Sbjct: 201 -LAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVD 254

Query: 330 LADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPH 389
           L+ NEL   + H    +  L   Y+  N L  ++      + +L  LDLS N L   +  
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER 312

Query: 390 SLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLA 449
           +      L  LYL  N  + ++   +    +L  L L  N    +   +L    ++   A
Sbjct: 313 NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPA 367

Query: 450 LYDNALSGVIPEELGN 465
           + D      I  +L +
Sbjct: 368 VDDADQHCKIDYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 11/96 (11%), Positives = 36/96 (37%)

Query: 624 NSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRS 683
             I  +L      + +++           +   L +   +   ++ + K   + + + R 
Sbjct: 11  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 70

Query: 684 LEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719
           +E+LNL+   + +     F   + +  + + +N + 
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  155 bits (393), Expect = 5e-42
 Identities = 60/325 (18%), Positives = 113/325 (34%), Gaps = 18/325 (5%)

Query: 178 LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNN 237
            +      +T + LK ++     +  N+  L L  N LS    +++     L  L L +N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 238 KLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGN 297
            L     L L +L+ L TL L NN        E+    S+  L    N ++    +S   
Sbjct: 69  VL--YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR---VSCSR 118

Query: 298 LTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS-SIPHYLGNLTNLAAFYLYK 356
                 +YL  N ++     + G    +  L+L  NE+ + +      +   L    L  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 357 NSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIG 416
           N +   +  ++     L  LDLS NKL+  +     +   +  + L +N  L  I + + 
Sbjct: 179 NFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN-KLVLIEKALR 234

Query: 417 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 476
             ++L    L  N      +       +  +  +    +   +  +      +  L    
Sbjct: 235 FSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKK-LTGQNEEECTVPTLGHYG 292

Query: 477 NQLQGSIPNLRNLTNLIRLRLNRNH 501
                 +P       LI L  + +H
Sbjct: 293 AYCCEDLPAPF-ADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  150 bits (382), Expect = 1e-40
 Identities = 58/303 (19%), Positives = 102/303 (33%), Gaps = 17/303 (5%)

Query: 218 SIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSL 277
           +I     N        + ++ L  ++     +  N+  L L  N  S    +++     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 278 SILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS 337
            +L L  N L     L L +L+ L TL L  N +      E+    S+  L  A+N +S 
Sbjct: 61  ELLNLSSNVL--YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113

Query: 338 SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSG-SIPHSLGNLTN 396
                     N+   YL  N ++     + G    +  LDL  N++   +      +   
Sbjct: 114 VSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 397 LAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALS 456
           L  L L  N  +  +  ++     L  L L  NKL+  +     +   +T ++L +N L 
Sbjct: 171 LEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 457 GVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHP 514
            +I + L     L    L  N                +  +           +E     P
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 515 KLT 517
            L 
Sbjct: 287 TLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  150 bits (381), Expect = 2e-40
 Identities = 57/334 (17%), Positives = 118/334 (35%), Gaps = 20/334 (5%)

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 253
           +I     N     I  + ++SL  ++ S   +  ++  L L  N L       L   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 254 DTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG 313
           + L L +N        ++ +L +L  L+L  N +       L    +++TL+   N++S 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 314 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG-SIPSEIGNLKS 372
            +       +    + LA+N+++       G  + +    L  N +   +      +  +
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 373 LSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLS 432
           L +L+L  N +   +   +     L  L L SN  L  +  E  +   +  + L +NKL 
Sbjct: 171 LEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLV 227

Query: 433 NSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNL 492
             I  +L    ++    L  N        +        + T++   ++           +
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 493 IRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 526
             L     +   ++   F        I L H++ 
Sbjct: 286 PTLGHYGAYCCEDLPAPFA----DRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  145 bits (369), Expect = 8e-39
 Identities = 56/335 (16%), Positives = 119/335 (35%), Gaps = 20/335 (5%)

Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSL 421
           +I     N        ++++ L  ++     +  N+  L L  N L      ++     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 422 FELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQG 481
             L L  N L    +  L +L+ +  L L +N +      EL     +  L  ++N +  
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 482 SIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG-QISSDWGKCPNL 540
            +           + L  N +T       G   ++ ++DL  N       +        L
Sbjct: 113 RVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 541 GTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFG 600
              ++  N I   +  ++   ++L  +DLS+N +   +  E    + +  + LR N+L  
Sbjct: 172 EHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL-V 227

Query: 601 QLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL 660
            +   L     LE+ DL  N       R      K   +     Q ++++  + E+   +
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 661 SELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS 695
             L     +  +++P+         ++ L H++  
Sbjct: 286 PTLGHYGAYCCEDLPAPFA----DRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  144 bits (365), Expect = 3e-38
 Identities = 56/328 (17%), Positives = 109/328 (33%), Gaps = 40/328 (12%)

Query: 99  IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIE 158
           I     N ++ K   ++ +S    +     +   +K L LS N  S      +   + +E
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 159 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGS 218
            L+L  N L                               L +L+ L  L L+NN +   
Sbjct: 62  LLNLSSNVLYE--------------------------TLDLESLSTLRTLDLNNNYV--- 92

Query: 219 IPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLS 278
              E+    S+ +L   NN +   +            +YL NN  +     + G    + 
Sbjct: 93  --QELLVGPSIETLHAANNNI-SRVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147

Query: 279 ILELGENRLNG-SIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS 337
            L+L  N ++  +      +   L+ L L  N +   +  ++     L  L+L+ N+L +
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKL-A 204

Query: 338 SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLS-GSIPHSLGNLTN 396
            +     +   +    L  N L   I   +   ++L + DL  N    G++         
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 397 LAILYLHSNTLLGSIPREIGNLKSLFEL 424
           +  +   +   L     E   + +L   
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  142 bits (361), Expect = 1e-37
 Identities = 60/359 (16%), Positives = 122/359 (33%), Gaps = 47/359 (13%)

Query: 314 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 373
           +I     N       ++ D+ L  ++     +  N+    L  N LS    +++     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 374 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 433
             L+LS N L       L +L+ L  L L++N +     +E+    S+  L   +N +S 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113

Query: 434 SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN---LRNLT 490
                     +   + L +N ++ +   + G   ++  L L  N++  ++       +  
Sbjct: 114 VSCSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSD 169

Query: 491 NLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNI 550
            L  L L  N +  ++        KL  +DLS N                          
Sbjct: 170 TLEHLNLQYNFIY-DVKGQVVF-AKLKTLDLSSNK------------------------- 202

Query: 551 IGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL-FGQLPSELGSL 609
           +  + PE   ++ +  I L  N ++  I   +    +L    LR N    G L       
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 610 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPI-KLEKLIHLSELDLSH 667
            +++ +   + +           +  L +         +++P    ++LI L      H
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYG---AYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  138 bits (351), Expect = 3e-36
 Identities = 57/311 (18%), Positives = 104/311 (33%), Gaps = 62/311 (19%)

Query: 410 SIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKL 469
           +I     N       ++ D+ L  +++    +  ++  L L  N LS +   +L    KL
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 470 TMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQ 529
            +L LS N L     +L +L+ L  L LN N++         + P +  +  ++NN    
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN---- 110

Query: 530 ISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLI 589
                                I  +                                   
Sbjct: 111 ---------------------ISRVSCSR--------------------------GQGKK 123

Query: 590 KLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSN-SIPRSLGNLVKLHYLNLSTNQFIQ 648
            + L  N++      + G   +++YLDL  N +   +      +   L +LNL  N  I 
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IY 182

Query: 649 EIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGL 708
           ++         L  LDLS N L   +  +  +   +  ++L +N L   I +       L
Sbjct: 183 DVK-GQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNL 239

Query: 709 LYIDISYNELH 719
            + D+  N  H
Sbjct: 240 EHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  138 bits (350), Expect = 3e-36
 Identities = 53/313 (16%), Positives = 103/313 (32%), Gaps = 18/313 (5%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIG 152
           + +   +     +   +K LDLS N  S      +   + L+ L LS+N         + 
Sbjct: 20  SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLE 77

Query: 153 HLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN 212
            LS +  L L  N +      E+    S+  L   +N +   +  S         +YL N
Sbjct: 78  SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCS--RGQGKKNIYLAN 129

Query: 213 NSLSGSIPSEIGNLKSLSSLALGNNKLCG-SIPLFLGNLTNLDTLYLRNNSFSSSIPSEI 271
           N ++     + G    +  L L  N++   +      +   L+ L L+ N     +  ++
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDVKGQV 188

Query: 272 GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELA 331
                L  L+L  N+L   +     +   +  + L  N L   I   +   ++L   +L 
Sbjct: 189 -VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245

Query: 332 DNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSL 391
            N              N     + K ++   +  +     ++  L          +P   
Sbjct: 246 GNGFHCGTLRDF-FSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

Query: 392 G-NLTNLAILYLH 403
              L  L   + H
Sbjct: 304 ADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 647 IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMN 706
           I EI     +        ++ + L + + S   +  +++ L+LS N LS           
Sbjct: 2   IHEIKQNGNRY---KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58

Query: 707 GLLYIDISYNELHGPIP 723
            L  +++S N L+  + 
Sbjct: 59  KLELLNLSSNVLYETLD 75

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  157 bits (399), Expect = 2e-41
 Identities = 76/324 (23%), Positives = 124/324 (38%), Gaps = 10/324 (3%)

Query: 207 ILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSS 266
            +  H      ++P  I        L LG N++         +  +L+ L L  N  S+ 
Sbjct: 15  AVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71

Query: 267 IPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI-GNLKSL 325
            P    NL +L  L L  NRL          L+NL  L +  N +   +   +  +L +L
Sbjct: 72  EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNL 130

Query: 326 SGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLS 384
             LE+ DN+L          L +L    L K +L+ SIP+E   +L  L  L L    ++
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN 189

Query: 385 GSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTH 444
               +S   L  L +L +     L ++        +L  L +    L+     ++ +L +
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249

Query: 445 MTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHL 502
           +  L L  N +S +    L  L++L  + L   QL   +     R L  L  L ++ N L
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQL 308

Query: 503 TCNISESFGIHPKLTFIDLSHNNF 526
           T      F     L  + L  N  
Sbjct: 309 TTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  153 bits (389), Expect = 5e-40
 Identities = 76/374 (20%), Positives = 143/374 (38%), Gaps = 20/374 (5%)

Query: 353 YLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIP 412
             ++     ++P  I        LDL +N++         +  +L  L L+ N +  ++ 
Sbjct: 17  LCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVE 72

Query: 413 REI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTM 471
                NL +L  L L  N+L          L+++T L + +N +  ++     +L  L  
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132

Query: 472 LTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQ 529
           L + DN L   I +     L +L +L L + +LT   +E+      L  + L H N    
Sbjct: 133 LEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191

Query: 530 ISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSE-IGKLSSL 588
               + +   L   ++S    + ++ P       L  + ++  + +  +P   +  L  L
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYL 250

Query: 589 IKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ 648
             L L  N +     S L  L++L+ + L   +L+   P +   L  L  LN+S NQ + 
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LT 309

Query: 649 EIPIKL-EKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCF--EEM 705
            +   +   + +L  L L  N L     +  C +  +        N +   P C   E +
Sbjct: 310 TLEESVFHSVGNLETLILDSNPL-----ACDCRLLWV-FRRRWRLNFNRQQPTCATPEFV 363

Query: 706 NGLLYIDISYNELH 719
            G  + D     L 
Sbjct: 364 QGKEFKDFPDVLLP 377

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  146 bits (369), Expect = 2e-37
 Identities = 80/309 (25%), Positives = 132/309 (42%), Gaps = 16/309 (5%)

Query: 107 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKN 165
           ++ + LDL  N        +  +   L+ L L+ N  S  + P    +L  +  L L  N
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSN 90

Query: 166 QLSGPIPHEV-GGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEI 223
           +L   IP  V  GLS+L +L ++ N +   +      +L NL  L + +N L   I    
Sbjct: 91  RLKL-IPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRA 147

Query: 224 -GNLKSLSSLALGNNKLCGSIPLF-LGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILE 281
              L SL  L L    L  SIP   L +L  L  L LR+ + ++        L  L +LE
Sbjct: 148 FSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206

Query: 282 LGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSE-IGNLKSLSGLELADNELSSSIP 340
           +       ++  +     NL +L +   +L+ ++P   + +L  L  L L+ N +S+   
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEG 265

Query: 341 HYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSL-GNLTNLA 398
             L  L  L    L    L+  +       L  L  L++S N+L+ ++  S+  ++ NL 
Sbjct: 266 SMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLE 323

Query: 399 ILYLHSNTL 407
            L L SN L
Sbjct: 324 TLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  127 bits (320), Expect = 4e-31
 Identities = 64/274 (23%), Positives = 112/274 (40%), Gaps = 12/274 (4%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQI 151
           N +  + P    N+  L+ L L SN     IP  +   LS L  L +S N+    +   +
Sbjct: 66  NIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYM 123

Query: 152 -GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPP-SLGNLTNLAIL 208
              L  +++L +  N L   I H    GL+SL +L L    L  SIP  +L +L  L +L
Sbjct: 124 FQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVL 181

Query: 209 YLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIP 268
            L + +++         L  L  L + +     ++        NL +L + + + ++ +P
Sbjct: 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VP 240

Query: 269 SE-IGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLS 326
              + +L  L  L L  N ++      L  L  L  + L    L+  +       L  L 
Sbjct: 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLR 299

Query: 327 GLELADNELSSSIPHYLGNLTNLAAFYLYKNSLS 360
            L ++ N+L++       ++ NL    L  N L+
Sbjct: 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  110 bits (277), Expect = 1e-25
 Identities = 62/279 (22%), Positives = 112/279 (40%), Gaps = 16/279 (5%)

Query: 63  NNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGT 122
           N  + + P A+  +       + ++ L + N++  I       +S L  LD+S N     
Sbjct: 66  NIVSAVEPGAFNNLF-----NLRTLGLRS-NRLKLIPLGVFTGLSNLTKLDISENKIV-I 118

Query: 123 IPPQI-GNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLS 179
           +   +  +L  LK L +  N     I  +    L+ +E L L K  L+  IP E    L 
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLH 176

Query: 180 SLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL 239
            L  L L    +      S   L  L +L + +     ++        +L+SL++ +  L
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236

Query: 240 CGSIPLF-LGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNL 298
             ++P   + +L  L  L L  N  S+   S +  L  L  ++L   +L    P +   L
Sbjct: 237 -TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295

Query: 299 TNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLELADNELS 336
             L  L +  N L+ ++   +  ++ +L  L L  N L+
Sbjct: 296 NYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  153 bits (389), Expect = 9e-40
 Identities = 90/507 (17%), Positives = 176/507 (34%), Gaps = 46/507 (9%)

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 253
            +P  L       IL +  N +S    S+I +L  L  L + +N++             L
Sbjct: 14  HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 254 DTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLS--LGNLTNLDTLYLYTNSL 311
           + L L +N     I        +L  L+L  N  + ++P+    GN++ L  L L T  L
Sbjct: 72  EYLDLSHNKLVK-ISC--HPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHL 127

Query: 312 SGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLK 371
             S    I +L     L +               L +     L+    +      I ++ 
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVS 185

Query: 372 SLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKL 431
             +  +L  + +   +  +  +     +  L +N  L ++            +++     
Sbjct: 186 VKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245

Query: 432 SNSISH-SLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNL-RNL 489
             ++ + S+ N+     L   D   SG       +L  L++  +  +        +    
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGT------SLKALSIHQVVSDVFGFPQSYIYEIF 299

Query: 490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 549
           +N+       +                  +D S+N     +  + G    L T  +   N
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ-MN 358

Query: 550 IIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL-GS 608
            +  L                             ++ SL +L + +N +           
Sbjct: 359 QLKELSKIAEM---------------------TTQMKSLQQLDISQNSVSYDEKKGDCSW 397

Query: 609 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHN 668
              L  L++SSN L+++I R L    ++  L+L +N+ I+ IP ++ KL  L EL+++ N
Sbjct: 398 TKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN 454

Query: 669 FLGKEIPSQIC-NMRSLEMLNLSHNNL 694
            L K +P  I   + SL+ + L  N  
Sbjct: 455 QL-KSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  150 bits (380), Expect = 1e-38
 Identities = 94/475 (19%), Positives = 154/475 (32%), Gaps = 26/475 (5%)

Query: 251 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNS 310
                L +  N  S    S+I +L  L IL +  NR+             L+ L L  N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 311 LSGSIPSEIGNLKSLSGLELADNELSS-SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN 369
           L   I        +L  L+L+ N   +  I    GN++ L    L    L  S    I +
Sbjct: 81  LV-KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 370 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDN 429
           L     L +               L +     LH           I +            
Sbjct: 138 LNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILD-------VSVKT 188

Query: 430 KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNL 489
             +  +S+    L                   +L NL  L  +  + N     I  L   
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT-LNNIETTWNSFI-RILQLVWH 246

Query: 490 TNLIRLRLNRNHLTCNISESFGIH-----PKLTFIDLSHNNFYGQISSDWGKCPNLGTFD 544
           T +    ++   L   +      +       L+   +  + F    S  +    N+   +
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 545 VSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL--FGQL 602
            +V+             S    +D S N +   +    G L+ L  LIL+ NQL    ++
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366

Query: 603 PSELGSLIQLEYLDLSSNRLSNSIPRSL-GNLVKLHYLNLSTNQFIQEIPIKLEKLIHLS 661
                 +  L+ LD+S N +S    +        L  LN+S+N     I   L     + 
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIK 424

Query: 662 ELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYN 716
            LDL  N + K IP Q+  + +L+ LN++ N L       F+ +  L  I +  N
Sbjct: 425 VLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  148 bits (374), Expect = 7e-38
 Identities = 86/500 (17%), Positives = 174/500 (34%), Gaps = 52/500 (10%)

Query: 157 IEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLS 216
              L++ +N +S     ++  LS L  L ++ N ++            L  L L +N L 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 217 GSIPSEIGNLKSLSSLALGNNKLCGSIPL--FLGNLTNLDTLYLRNNSFSSSIPSEIGNL 274
             I        +L  L L  N    ++P+    GN++ L  L L       S    I +L
Sbjct: 83  -KISC--HPTVNLKHLDLSFNAF-DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 275 KSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNE 334
               +L +               L + +T  L+    +      I ++   +   L  + 
Sbjct: 139 NISKVLLVLGE--TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 335 LSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNL 394
           +          +        + + L+    +   +  +L+N++ + N     +   L   
Sbjct: 197 IK--------CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL--QLVWH 246

Query: 395 TNLAILYLHSNTLLGSIPREIG-----NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLA 449
           T +    + +  L G +          +LK+L   Q+  +      S+     ++M +  
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 450 LYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISE 508
              +    V       +     L  S+N L  ++  N  +LT L  L L  N L   +S+
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSK 365

Query: 509 SFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVI 567
              +  ++                      +L   D+S N++              L  +
Sbjct: 366 IAEMTTQMK---------------------SLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404

Query: 568 DLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIP 627
           ++S+N +   I   +     +  L L  N++   +P ++  L  L+ L+++SN+L  S+P
Sbjct: 405 NMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVP 460

Query: 628 R-SLGNLVKLHYLNLSTNQF 646
                 L  L  + L TN +
Sbjct: 461 DGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  147 bits (373), Expect = 1e-37
 Identities = 91/482 (18%), Positives = 168/482 (34%), Gaps = 26/482 (5%)

Query: 99  IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIE 158
           +P  +    K   L++S N  S      I +LS L+ L +S N+              +E
Sbjct: 15  VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72

Query: 159 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPS--LGNLTNLAILYLHNNSLS 216
            L L  N+L     H      +L  L L+ N    ++P     GN++ L  L L    L 
Sbjct: 73  YLDLSHNKLVKISCH---PTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 217 GSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKS 276
            S    I +L     L +               L + +T  L     ++     I ++  
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSV 186

Query: 277 LSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELS 336
            ++  L  + +   +  +  +        L TN    ++          S + +      
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246

Query: 337 SSIPH-YLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLT 395
           +++ +  + N+             SG+      +LK+LS   +  +       +     +
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGT------SLKALSIHQVVSDVFGFPQSYIYEIFS 300

Query: 396 NLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNAL 455
           N+ I     +            +     L   +N L++++  + G+LT +  L L  N L
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

Query: 456 SGV--IPEELGNLVKLTMLTLSDNQLQGSIP--NLRNLTNLIRLRLNRNHLTCNISESFG 511
             +  I E    +  L  L +S N +       +     +L+ L ++ N LT  I     
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL- 419

Query: 512 IHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVIDLS 570
             P++  +DL  N     I     K   L   +V+ +N + S+P  I D  + L  I L 
Sbjct: 420 -PPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVA-SNQLKSVPDGIFDRLTSLQKIWLH 476

Query: 571 AN 572
            N
Sbjct: 477 TN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  143 bits (363), Expect = 2e-36
 Identities = 90/457 (19%), Positives = 166/457 (36%), Gaps = 30/457 (6%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQI 151
           N I  +    I ++SKL+ L +S N     +   +      L++L LS N+    I    
Sbjct: 31  NYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVK-ISCH- 87

Query: 152 GHLSYIEALHLFKNQL-SGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL 210
                ++ L L  N   + PI  E G +S L  L L++  L+ S    + +L    +L +
Sbjct: 88  -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146

Query: 211 HNNSLSGSIPSE---IGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNN------ 261
              +       E     N +SL  +   N +    + + +  + NL+   ++        
Sbjct: 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206

Query: 262 SFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNL---TNLDTLYLYTNSLSGSIPSE 318
           S+  SI +++     LS L L       +  + +  L   T +    +    L G +   
Sbjct: 207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266

Query: 319 IG-----NLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 373
                  +LK+LS  ++  +       +     +N+       +            +   
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326

Query: 374 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIG---NLKSLFELQLGDNK 430
            +LD S N L+ ++  + G+LT L  L L  N  L  + +       +KSL +L +  N 
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS 385

Query: 431 LSNSISHSL-GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNL 489
           +S             +  L +  N L+  I   L    ++ +L L  N+++     +  L
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVKL 443

Query: 490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 526
             L  L +  N L       F     L  I L  N +
Sbjct: 444 EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  134 bits (339), Expect = 2e-33
 Identities = 88/415 (21%), Positives = 149/415 (35%), Gaps = 30/415 (7%)

Query: 104 GNISKLKYLDLSSNSF-SGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHL 162
                LK+LDLS N+F +  I  + GN+S LKFL LS           I HL+  + L +
Sbjct: 87  HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146

Query: 163 FKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSG----- 217
                      +  GL   N  +L   F        + +++   +  L  +++       
Sbjct: 147 LGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204

Query: 218 ------SIPSEIGNLKSLSSLALGNNKL---CGSIPLFLGNLTNLDTLYLRNNSFSSSIP 268
                 SI +++     LS+L L N +         L L   T +    + N      + 
Sbjct: 205 KCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD 264

Query: 269 SEIG-----NLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLK 323
                    +LK+LSI ++  +             +N++      +            + 
Sbjct: 265 FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS 324

Query: 324 SLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIG---NLKSLSNLDLSE 380
               L+ ++N L+ ++    G+LT L    L  N L   +         +KSL  LD+S+
Sbjct: 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQ 383

Query: 381 NKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSL 439
           N +S            +L  L + SN L  +I R +     +  L L  NK+  SI   +
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQV 440

Query: 440 GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIR 494
             L  +  L +  N L  V       L  L  + L  N    S P +  L+  + 
Sbjct: 441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 495

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  133 bits (337), Expect = 4e-33
 Identities = 85/436 (19%), Positives = 155/436 (35%), Gaps = 32/436 (7%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQF-SGRIPPQI 151
           N+I  +         +L+YLDLS N     I         LK L LS N F +  I  + 
Sbjct: 55  NRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEF 111

Query: 152 GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPP-SLGNL--TNLAIL 208
           G++S ++ L L    L       +  L+    L +          P  L +    +L I+
Sbjct: 112 GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171

Query: 209 YLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDT------LYLRNNS 262
           +  N      +   +  + +L    +           FL  L  L T      L L N  
Sbjct: 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231

Query: 263 FSSSIPSEIGNL---KSLSILELGENRLNG-----SIPLSLGNLTNLDTLYLYTNSLSGS 314
            + +    I  L    ++    +   +L G         S  +L  L    + ++     
Sbjct: 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP 291

Query: 315 IPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLS 374
                    +++      +            ++         N L+ ++    G+L  L 
Sbjct: 292 QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351

Query: 375 NLDLSENKLSGSIPHSLG---NLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNK 430
            L L  N+L   +         + +L  L +  N++     +      KSL  L +  N 
Sbjct: 352 TLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410

Query: 431 LSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRN 488
           L+++I   L     + +L L+ N +   IP+++  L  L  L ++ NQL+ S+P+     
Sbjct: 411 LTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDR 466

Query: 489 LTNLIRLRLNRNHLTC 504
           LT+L ++ L+ N   C
Sbjct: 467 LTSLQKIWLHTNPWDC 482

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  114 bits (287), Expect = 8e-27
 Identities = 76/395 (19%), Positives = 132/395 (33%), Gaps = 29/395 (7%)

Query: 354 LYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPR 413
             KN L   +P ++   +  + L++S+N +S      + +L+ L IL +  N +      
Sbjct: 7   RSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS 63

Query: 414 EIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV-IPEELGNLVKLTML 472
                + L  L L  NKL     H   NL H   L L  NA   + I +E GN+ +L  L
Sbjct: 64  VFKFNQELEYLDLSHNKLVKISCHPTVNLKH---LDLSFNAFDALPICKEFGNMSQLKFL 120

Query: 473 TLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISS 532
            LS   L+ S        N+ ++ L          E            L       +   
Sbjct: 121 GLSTTHLEKSSVLPIAHLNISKVLLVLGETYGE-KEDPEGLQDFNTESLHIVFPTNKEFH 179

Query: 533 DWGKCPNLGTFDVSVNNI-----------IGSLPPEIGDSSQLHVIDLSANHIIGKIPSE 581
                      ++ ++NI             S+  ++  + +L  + L+           
Sbjct: 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239

Query: 582 IGKL---SSLIKLILRRNQLFGQLPSELG-----SLIQLEYLDLSSNRLSNSIPRSLGNL 633
           I +L   +++    +   +L GQL          SL  L    + S+             
Sbjct: 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF 299

Query: 634 VKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNN 693
             ++  N + +       +   K+     LD S+N L   +     ++  LE L L  N 
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 694 LS--DFIPRCFEEMNGLLYIDISYNELHGPIPNST 726
           L     I     +M  L  +DIS N +        
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 65.3 bits (159), Expect = 5e-11
 Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 10/189 (5%)

Query: 566 VIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNS 625
           ++D S N +I  +P ++        L + +N +     S++ SL +L  L +S NR+   
Sbjct: 4   LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 626 IPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIP--SQICNMRS 683
                    +L YL+LS N+ + +I       ++L  LDLS N     +P   +  NM  
Sbjct: 61  DISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNAF-DALPICKEFGNMSQ 116

Query: 684 LEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLC 743
           L+ L LS  +L          +N    + +   E +G   +     D   E+L       
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNI-SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 744 GDIKGFQSC 752
            +       
Sbjct: 176 KEFHFILDV 184

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  145 bits (367), Expect = 3e-37
 Identities = 90/407 (22%), Positives = 151/407 (37%), Gaps = 40/407 (9%)

Query: 299 TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYL-GNLTNLAAFYLYKN 357
            +++ + L  NS++    +    L+ L  L++        I +     L++L    L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 358 SLSGSIPSEI-GNLKSLSNLDLSENKL-SGSIPH-SLGNLTNLAILYLHSNTLLGSIPRE 414
                + +     L +L  L L++  L    +       LT+L +L L  N +    P  
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 415 I-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLT 473
              N++    L L  NK+ +     L N        L               L  +T+  
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL--------------RLSSITLQD 194

Query: 474 LSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFI-DLSHNNFYGQIS 531
           +++  L      N    T++  L L+ N    ++++ F      T I  L  +N Y   S
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254

Query: 532 SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIK 590
           S          F    N     L       S +   DLS + I   +   +    + L +
Sbjct: 255 SFGHTN-----FKDPDNFTFKGLEA-----SGVKTCDLSKSKI-FALLKSVFSHFTDLEQ 303

Query: 591 LILRRNQLFGQLPSE-LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQE 649
           L L +N++  ++       L  L  L+LS N L +   R   NL KL  L+LS N  I+ 
Sbjct: 304 LTLAQNEI-NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRA 361

Query: 650 IPIKL-EKLIHLSELDLSHNFLGKEIPSQI-CNMRSLEMLNLSHNNL 694
           +  +    L +L EL L  N L K +P  I   + SL+ + L  N  
Sbjct: 362 LGDQSFLGLPNLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  144 bits (366), Expect = 3e-37
 Identities = 92/405 (22%), Positives = 152/405 (37%), Gaps = 34/405 (8%)

Query: 109 LKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQL 167
           + Y+DLS NS +         L  L+FL +        I       LS +  L L  NQ 
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 168 SGPIPHEV-GGLSSLNELALTSNFLKGSIPP--SLGNLTNLAILYLHNNSLSGSIPSEI- 223
              +      GL++L  L LT   L G++        LT+L +L L +N++    P+   
Sbjct: 92  LQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 224 GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELG 283
            N++    L L  NK+       L N        LR              L S+++ ++ 
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR--------------LSSITLQDMN 196

Query: 284 ENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYL 343
           E  L      +    T++ TL L  N    S+     +  + + ++      S ++    
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256

Query: 344 GNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
           G+             L  S          +   DLS++K+   +     + T+L  L L 
Sbjct: 257 GHTNFKDPDNFTFKGLEAS---------GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307

Query: 404 SNTLLGSIPREI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEE 462
            N +   I       L  L +L L  N L +  S    NL  + +L L  N +  +  + 
Sbjct: 308 QNEI-NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366

Query: 463 LGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCN 505
              L  L  L L  NQL+ S+P+     LT+L ++ L+ N   C+
Sbjct: 367 FLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 410

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  140 bits (354), Expect = 1e-35
 Identities = 76/370 (20%), Positives = 131/370 (35%), Gaps = 40/370 (10%)

Query: 372 SLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNK 430
            ++ +DLS N ++     S   L +L  L +   T    I       L SL  L+L  N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 431 LSNSISHSLGNLTHMTLLALYDNAL-SGVIPEEL-GNLVKLTMLTLSDNQLQGSIPN--L 486
                + +   L ++ +L L    L   V+       L  L ML L DN ++   P    
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 487 RNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLS-HNNFYGQISSDWGKCPNLGTFDV 545
            N+     L L  N +     E         F  L   +     ++  W      G    
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF- 209

Query: 546 SVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSE 605
                          ++ +  +DLS N     +        +  K+          + S 
Sbjct: 210 --------------KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255

Query: 606 LGSLI---------------QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEI 650
            G                   ++  DLS +++   +     +   L  L L+ N+ I +I
Sbjct: 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKI 314

Query: 651 PIK-LEKLIHLSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCFEEMNGL 708
                  L HL +L+LS NFL   I S++  N+  LE+L+LS+N++     + F  +  L
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373

Query: 709 LYIDISYNEL 718
             + +  N+L
Sbjct: 374 KELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.9 bits (192), Expect = 3e-15
 Identities = 51/235 (21%), Positives = 85/235 (36%), Gaps = 25/235 (10%)

Query: 85  NSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQF 143
            ++   N   +           + +  LDLS N F  ++  +    ++  K   L  +  
Sbjct: 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249

Query: 144 SGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGL--SSLNELALTSNFLKGSIPPSL-G 200
                       Y             P      GL  S +    L+ + +  ++  S+  
Sbjct: 250 ------------YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFS 296

Query: 201 NLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFL-GNLTNLDTLYL 258
           + T+L  L L  N ++  I       L  L  L L  N L GSI   +  NL  L+ L L
Sbjct: 297 HFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDL 354

Query: 259 RNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLS-LGNLTNLDTLYLYTNSL 311
             N    ++  +    L +L  L L  N+L  S+P      LT+L  ++L+TN  
Sbjct: 355 SYNHI-RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.2 bits (172), Expect = 1e-12
 Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 8/165 (4%)

Query: 562 SQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL-GSLIQLEYLDLSSN 620
           + ++ +DLS N I     +   +L  L  L + +      + +     L  L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 621 RLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK---LEKLIHLSELDLSHNFLGKEIPSQ 677
           +       +   L  L  L L+    +    +     + L  L  L L  N + K  P+ 
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 678 I-CNMRSLEMLNLSHNNLSDFIPRCFEEMNG--LLYIDISYNELH 719
              NMR   +L+L+ N +            G     + +S   L 
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ 193

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 612 LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFL 670
           + Y+DLS N ++     S   L  L +L +        I       L  L  L L +N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 671 GKEIPSQI-CNMRSLEMLNLSHNNLSDFI--PRCFEEMNGLLYIDISYNELHGPIPNSTA 727
             ++ +     + +LE+L L+  NL   +     F+ +  L  + +  N +   I  ++ 
Sbjct: 92  -LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-IQPASF 149

Query: 728 FS 729
           F 
Sbjct: 150 FL 151

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 636 LHYLNLSTNQFIQEIPIK-LEKLIHLSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSHNN 693
           ++Y++LS N  I E+      +L  L  L +     G  I +     + SL +L L +N 
Sbjct: 32  VNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 694 LSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSD 730
                   F  +  L  + ++   L G + +   F  
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  146 bits (369), Expect = 9e-37
 Identities = 93/618 (15%), Positives = 192/618 (31%), Gaps = 53/618 (8%)

Query: 81  VGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSA 140
           VG     N+      +  I   +        + +   +       +   L+  K +    
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60

Query: 141 NQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPS- 198
           +    ++P  +      +E L+L   Q+     +      ++ +L +  N ++  +PP  
Sbjct: 61  STMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHV 118

Query: 199 LGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLY 257
             N+  L +L L  N LS S+P  I  N   L++L++ NN L           T+L  L 
Sbjct: 119 FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177

Query: 258 LRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPS 317
           L +N   + +   +  + SL    +  N L+     +L     ++ L    NS++  +  
Sbjct: 178 LSSNRL-THVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG 228

Query: 318 EIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLD 377
            +     L+ L+L  N L+     +L N   L    L  N L   +      ++ L  L 
Sbjct: 229 PV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 378 LSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISH 437
           +S N+L  ++      +  L +L L  N LL  + R       L  L L  N +    + 
Sbjct: 285 ISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TL 339

Query: 438 SLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-----------NL 486
            L     +  L L  N         L     +    + D      I            + 
Sbjct: 340 KLSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGLCCKESD 397

Query: 487 RNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVS 546
           +   + +   +    +   +  + G       I+   +  +                +  
Sbjct: 398 KPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAE 457

Query: 547 VN----NIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQL 602
           VN     +      +I     L  +    +  + +       L+     + +      + 
Sbjct: 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKER 517

Query: 603 PSELGSLIQ------------LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEI 650
            +      Q             E L+  +  L   +        +L        Q ++++
Sbjct: 518 QAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577

Query: 651 PIKLEKLIHLSELDLSHN 668
             K  +      +   H+
Sbjct: 578 EAKKNRNPDTRRVSHHHH 595

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  143 bits (363), Expect = 5e-36
 Identities = 96/533 (18%), Positives = 178/533 (33%), Gaps = 81/533 (15%)

Query: 218 SIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSL 277
            I S +        + +               L N   +  +N++      + + + + +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 278 SILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLELADNELS 336
            +L L + ++      +      +  LY+  N++   +P  +  N+  L+ L L  N+LS
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 136

Query: 337 SSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSLGNLT 395
                                    S+P  I  N   L+ L +S N L      +    T
Sbjct: 137 -------------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171

Query: 396 NLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNAL 455
           +L  L L SN  L  +   +  + SLF   +  N LS     +L     +  L    N++
Sbjct: 172 SLQNLQLSSN-RLTHVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSI 223

Query: 456 SGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPK 515
           + V        V+LT+L L  N L      L N   L+ + L+ N L   +   F    +
Sbjct: 224 NVV---RGPVNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279

Query: 516 LTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHII 575
           L  + +S+N                          + +L         L V+DLS NH++
Sbjct: 280 LERLYISNNR-------------------------LVALNLYGQPIPTLKVLDLSHNHLL 314

Query: 576 GKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVK 635
             +     +   L  L L  N +   L   L +   L+ L LS N    +  R+L     
Sbjct: 315 -HVERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRN 368

Query: 636 LHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNF----------LGKEIPSQICNMRSLE 685
           +    +       +I  +LE  +   E D  +            + +++        + +
Sbjct: 369 VARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATD 428

Query: 686 MLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQG 738
            +N   +       +    + G   ++   NEL   +   T       + LQG
Sbjct: 429 TINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQG 481

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.4 bits (115), Expect = 8e-06
 Identities = 13/108 (12%), Positives = 38/108 (35%)

Query: 611 QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFL 670
           Q  Y           I  +L      + +++           +   L +   +   ++ +
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 671 GKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
            K   + + + R +E+LNL+   + +     F   + +  + + +N +
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 111

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  142 bits (359), Expect = 3e-36
 Identities = 70/424 (16%), Positives = 142/424 (33%), Gaps = 45/424 (10%)

Query: 107 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQ 166
                   ++     T       L+ L  L    +  +      I  L+ +  L    N 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNN 75

Query: 167 LSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNL 226
           ++     ++   ++L  LA  SN L  ++   +  LT L  L    N L+     ++   
Sbjct: 76  ITTL---DLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT---KLDVSQN 126

Query: 227 KSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENR 286
             L+ L    N L     + + + T L  L    N   + +   +     L+ L+   N+
Sbjct: 127 PLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 287 LNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNL 346
           +     L +     L+ L   TN+++  +   +     L+ L+ + N+L + I   +  L
Sbjct: 182 ITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKL-TEID--VTPL 232

Query: 347 TNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNT 406
           T L  F    N L+  +   +  L  L+ L   +  L   I   L + T L         
Sbjct: 233 TQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCR 286

Query: 407 LLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNL 466
            +  +  ++ +   L+ L      ++      L     +  L L +  L+ +   ++ + 
Sbjct: 287 KIKEL--DVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTEL---DVSHN 338

Query: 467 VKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFG-----IHPKLTFIDL 521
            KL  L+  +  +Q    ++  +  L               E+       I      +D 
Sbjct: 339 TKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQ 397

Query: 522 SHNN 525
             N 
Sbjct: 398 FGNP 401

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  134 bits (340), Expect = 9e-34
 Identities = 76/413 (18%), Positives = 144/413 (34%), Gaps = 43/413 (10%)

Query: 181 LNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLC 240
                  +  ++ +   S   L  L  L  HN+S++    + I  L  L+ L   +N + 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNI- 76

Query: 241 GSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTN 300
            ++ L     TNL  L   +N  ++    ++  L  L+ L    N+L     L +     
Sbjct: 77  TTLDL--SQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT---KLDVSQNPL 128

Query: 301 LDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLS 360
           L  L    N+L+  I   + +   L+ L+   N+  + +   +   T L       N ++
Sbjct: 129 LTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT 183

Query: 361 GSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKS 420
                ++   K L+ L+   N ++  +   L     L  L   SN  L  I   +  L  
Sbjct: 184 E---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSN-KLTEID--VTPLTQ 234

Query: 421 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 480
           L       N L+     +L  LT    L      L  +   +L +  +L        + +
Sbjct: 235 LTYFDCSVNPLTELDVSTLSKLTT---LHCIQTDLLEI---DLTHNTQLIYFQAEGCR-K 287

Query: 481 GSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISS-DWGKCPN 539
               ++ + T L  L      +T         +PKL ++ L++     +++  D      
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNT----ELTELDVSHNTK 340

Query: 540 LGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLI 592
           L +     N  I      +G    L+    +    I  +P E    +SL   +
Sbjct: 341 LKSLSCV-NAHIQDFSS-VGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAV 390

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  129 bits (325), Expect = 6e-32
 Identities = 82/422 (19%), Positives = 149/422 (35%), Gaps = 42/422 (9%)

Query: 204 NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF 263
           N A        +  +       L +L+SL   N+ +   +   +  LT L  L   +N+ 
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI-TDMT-GIEKLTGLTKLICTSNNI 76

Query: 264 SSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLK 323
           ++    ++    +L+ L    N+L     L +  LT L  L   TN L+     ++    
Sbjct: 77  TT---LDLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT---KLDVSQNP 127

Query: 324 SLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKL 383
            L+ L  A N L+      + + T L     + N     +   +     L+ LD S NK+
Sbjct: 128 LLTYLNCARNTLTE---IDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI 182

Query: 384 SGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLT 443
           +      +     L  L   +N  +  +   +     L  L    NKL+      +  LT
Sbjct: 183 TEL---DVSQNKLLNRLNCDTN-NITKLD--LNQNIQLTFLDCSSNKLT---EIDVTPLT 233

Query: 444 HMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLT 503
            +T      N L+ +   ++  L KLT L      L   I  L + T LI  +       
Sbjct: 234 QLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLL-EID-LTHNTQLIYFQAEGCRKI 288

Query: 504 CNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQ 563
             +      + +L  +D            D  + P L    ++ N  +  L   +  +++
Sbjct: 289 KEL--DVTHNTQLYLLDCQAAGI---TELDLSQNPKLVYLYLN-NTELTELD--VSHNTK 340

Query: 564 LHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLS 623
           L  +     HI  +  S +GK+ +L        Q    +P E  +   L  + +S + L 
Sbjct: 341 LKSLSCVNAHI--QDFSSVGKIPALNNNFEAEGQTI-TMPKETLTNNSL-TIAVSPDLLD 396

Query: 624 NS 625
             
Sbjct: 397 QF 398

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  127 bits (321), Expect = 2e-31
 Identities = 75/395 (18%), Positives = 148/395 (37%), Gaps = 42/395 (10%)

Query: 325 LSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLS 384
            +    A  E+ ++       L  L +   + +S++    + I  L  L+ L  + N ++
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT 77

Query: 385 GSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTH 444
            ++   L   TNL  L   SN  L ++   +  L  L  L    NKL+      +     
Sbjct: 78  -TLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKLT---KLDVSQNPL 128

Query: 445 MTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTC 504
           +T L    N L+ +   ++ +  +LT L    N+   +  ++   T L  L  + N +T 
Sbjct: 129 LTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKI-TKLDVTPQTQLTTLDCSFNKIT- 183

Query: 505 NISESFGIHPKLTFIDLSHNNFYGQISS-DWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQ 563
                   +  L  ++   N     I+  D  +   L   D S +N +  +   +   +Q
Sbjct: 184 --ELDVSQNKLLNRLNCDTN----NITKLDLNQNIQLTFLDCS-SNKLTEID--VTPLTQ 234

Query: 564 LHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLS 623
           L   D S N +  ++   +  LS L  L   +  L   L  +L    QL Y      R  
Sbjct: 235 LTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDL---LEIDLTHNTQLIYFQAEGCRKI 288

Query: 624 NSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRS 683
             +   + +  +L+ L+      I E+ +   +   L  L L++  L  E+   + +   
Sbjct: 289 KELD--VTHNTQLYLLDCQAAG-ITELDLS--QNPKLVYLYLNNTEL-TELD--VSHNTK 340

Query: 684 LEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
           L+ L+  + ++ DF      ++  L     +  + 
Sbjct: 341 LKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  125 bits (315), Expect = 1e-30
 Identities = 69/413 (16%), Positives = 138/413 (33%), Gaps = 45/413 (10%)

Query: 101 PQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEAL 160
             I  ++ L  L  +SN+ + T+   +   + L +L   +N+ +      +  L+ +  L
Sbjct: 58  TGIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYL 111

Query: 161 HLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIP 220
           +   N+L+     +V     L  L    N L   I   + + T L  L  H N     + 
Sbjct: 112 NCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD 165

Query: 221 SEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSIL 280
             +     L++L    NK+     L +     L+ L    N+ +     ++     L+ L
Sbjct: 166 --VTPQTQLTTLDCSFNKI---TELDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFL 217

Query: 281 ELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIP 340
           +   N+L     + +  LT L       N L+  +   +  L  L+ L     +L     
Sbjct: 218 DCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLEIDL 271

Query: 341 HYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAIL 400
            +   L      Y            ++ +   L  LD     ++  +   L     L  L
Sbjct: 272 THNTQLI-----YFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYL 323

Query: 401 YLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIP 460
           YL++   L  +   + +   L  L   +  +    S S+G +  +      +     +  
Sbjct: 324 YLNNT-ELTELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPK 378

Query: 461 EELGNL-----VKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISE 508
           E L N      V   +L    N +    P    + +     +   +L+ +   
Sbjct: 379 ETLTNNSLTIAVSPDLLDQFGNPMN-IEPGDGGVYDQATNTITWENLSTDNPA 430

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  143 bits (361), Expect = 6e-36
 Identities = 76/436 (17%), Positives = 148/436 (33%), Gaps = 46/436 (10%)

Query: 172 PHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSS 231
              +   S  N ++ T          +       A+   + N     +      +   S 
Sbjct: 10  NFSLSQNSFYNTISGTYA----DYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSE 63

Query: 232 LALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSI 291
           L L    L  S+P  L     +  L +  N+  S +P    +L+ L   +  +NRL+ ++
Sbjct: 64  LQLNRLNLS-SLPDNLP--PQITVLEITQNALIS-LPELPASLEYL---DACDNRLS-TL 115

Query: 292 PLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAA 351
           P    +L +LD   +  N L+  +P     L+ ++     +N+L+  +P    +L  L  
Sbjct: 116 PELPASLKHLD---VDNNQLT-MLPELPALLEYIN---ADNNQLTM-LPELPTSLEVL-- 165

Query: 352 FYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNL----AILYLHSNTL 407
             +  N L+  +P    +L++L   D+S N L  S+P       +            N  
Sbjct: 166 -SVRNNQLT-FLPELPESLEAL---DVSTNLLE-SLPAVPVRNHHSEETEIFFRCREN-R 218

Query: 408 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLV 467
           +  IP  I +L     + L DN LS+ I  SL   T            S +   +   L 
Sbjct: 219 ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS-MSDGQQNTLH 277

Query: 468 KLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFY 527
           +     ++    +    ++  + +      + N  +  +          T    + + F 
Sbjct: 278 RPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLD-----RLSDTVSARNTSGFR 332

Query: 528 GQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHII-----GKIPSEI 582
            Q+++   K             +         D   L   +L    ++     G   ++ 
Sbjct: 333 EQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDT 392

Query: 583 GKLSSLIKLILRRNQL 598
           G L SL + + R   L
Sbjct: 393 GALLSLGREMFRLEIL 408

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  125 bits (315), Expect = 4e-30
 Identities = 75/344 (21%), Positives = 125/344 (36%), Gaps = 36/344 (10%)

Query: 362 SIPSEIGNLKSLSNLDLSENKLSG---SIPHSLGNLTNLAILYLHSNTLLGSIPREIGNL 418
           SI   I N  SLS  +   N +SG       +       A+   + N  +  +      +
Sbjct: 2   SIMLPINNNFSLSQ-NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLI 58

Query: 419 KSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 478
               ELQL    LS S+  +L     +T+L +  NAL   +PE   +L     L   DN+
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASL---EYLDACDNR 111

Query: 479 LQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCP 538
           L  ++P L    +L  L ++ N LT  + E       L +I+  +N    Q++       
Sbjct: 112 LS-TLPEL--PASLKHLDVDNNQLTM-LPELPA---LLEYINADNN----QLTMLPELPT 160

Query: 539 NLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSL----IKLILR 594
           +L    V  NN +  LP        L  +D+S N +   +P+   +        I    R
Sbjct: 161 SLEVLSVR-NNQLTFLPELPE---SLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCR 215

Query: 595 RNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL 654
            N++   +P  + SL     + L  N LS+ I  SL         +     F   +    
Sbjct: 216 ENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF--SMSDGQ 272

Query: 655 EKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFI 698
           +  +H    D    +  +   S +  +          N  S F+
Sbjct: 273 QNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFL 316

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  122 bits (306), Expect = 5e-29
 Identities = 67/376 (17%), Positives = 124/376 (32%), Gaps = 35/376 (9%)

Query: 101 PQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEAL 160
            +   I++   L L+  + S ++P  +     +  L ++ N     +P     L Y   L
Sbjct: 53  LKECLINQFSELQLNRLNLS-SLPDNLPPQ--ITVLEITQNALI-SLPELPASLEY---L 105

Query: 161 HLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIP 220
               N+LS  +P      +SL  L + +N L   +P     L     +   NN L+  +P
Sbjct: 106 DACDNRLST-LPEL---PASLKHLDVDNNQLT-MLPELPALLEY---INADNNQLT-MLP 156

Query: 221 SEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLS-- 278
               +L+ LS   + NN+L   +P    +L  LD   +  N    S+P+           
Sbjct: 157 ELPTSLEVLS---VRNNQL-TFLPELPESLEALD---VSTNLL-ESLPAVPVRNHHSEET 208

Query: 279 --ILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELS 336
                  ENR+   IP ++ +L    T+ L  N LS  I   +    +           S
Sbjct: 209 EIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

Query: 337 SSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTN 396
            S      N  +             +  S++  +      +   N  S +    L +  +
Sbjct: 268 MSDGQQ--NTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFS-AFLDRLSDTVS 324

Query: 397 LAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLT--HMTLLALYDNA 454
                      + +   ++     L +        +         LT  ++    L   A
Sbjct: 325 ARNTSGFREQ-VAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQA 383

Query: 455 LSGVIPEELGNLVKLT 470
             G+   + G L+ L 
Sbjct: 384 SEGLFDNDTGALLSLG 399

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  118 bits (298), Expect = 6e-28
 Identities = 58/311 (18%), Positives = 110/311 (35%), Gaps = 34/311 (10%)

Query: 434 SISHSLGNLTHMTLLALYDNALSGVIPE---ELGNLVKLTMLTLSDNQLQGSIPNLRNLT 490
           SI   + N   ++  + Y N +SG   +         K  +   + N+    +     + 
Sbjct: 2   SIMLPINNNFSLSQNSFY-NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL-IN 59

Query: 491 NLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNI 550
               L+LNR +L+ ++ ++    P++T ++++ N     +        +L   D   +N 
Sbjct: 60  QFSELQLNRLNLS-SLPDNLP--PQITVLEITQNAL-ISLPELPA---SLEYLDAC-DNR 111

Query: 551 IGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLI 610
           + +LP        L  +D+  N +   +P     L     +    NQL   LP    SL 
Sbjct: 112 LSTLPELPA---SLKHLDVDNNQLT-MLPELPALLE---YINADNNQL-TMLPELPTSL- 162

Query: 611 QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSE----LDLS 666
             E L + +N+L   +P    +L     L++STN  ++ +P    +  H  E        
Sbjct: 163 --EVLSVRNNQL-TFLPELPESL---EALDVSTNL-LESLPAVPVRNHHSEETEIFFRCR 215

Query: 667 HNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNST 726
            N +   IP  I ++     + L  N LS  I     +                      
Sbjct: 216 ENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

Query: 727 AFSDALMEALQ 737
                L +A+ 
Sbjct: 275 TLHRPLADAVT 285

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  106 bits (265), Expect = 6e-24
 Identities = 57/313 (18%), Positives = 105/313 (33%), Gaps = 32/313 (10%)

Query: 99  IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIE 158
           +P    +   L+YLD   N  S T+P    +   LK L +  NQ +  +P     L   E
Sbjct: 95  LPELPAS---LEYLDACDNRLS-TLPELPAS---LKHLDVDNNQLT-MLPELPALL---E 143

Query: 159 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGS 218
            ++   NQL+  +P      +SL  L++ +N L   +P    +L     L +  N L  S
Sbjct: 144 YINADNNQLTM-LPEL---PTSLEVLSVRNNQLT-FLPELPESLE---ALDVSTNLLE-S 194

Query: 219 IPSEIGNLKSLSS----LALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNL 274
           +P+                   N++   IP  + +L    T+ L +N  SS I   +   
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253

Query: 275 KSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNE 334
            +           + S      N  +       T     +  S++  +      E   N 
Sbjct: 254 TAQPDYHGPRIYFSMSDGQQ--NTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANT 311

Query: 335 LSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNL 394
             S+    L +  +      ++  ++  +      L + + L      ++     S  + 
Sbjct: 312 F-SAFLDRLSDTVSARNTSGFREQVAAWLE----KLSASAELRQQSFAVAADATESCEDR 366

Query: 395 TNLAILYLHSNTL 407
             L    L    L
Sbjct: 367 VALTWNNLRKTLL 379

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.7 bits (113), Expect = 2e-05
 Identities = 24/217 (11%), Positives = 61/217 (28%), Gaps = 13/217 (5%)

Query: 99  IPPQIGNISKLK----YLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHL 154
           +P         +    +     N  +  IP  I +L     + L  N  S RI   +   
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253

Query: 155 SYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNS 214
           +     H  +   S     +             + +   +    +  + +      H N+
Sbjct: 254 TAQPDYHGPRIYFSMSDGQQ--NTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANT 311

Query: 215 LSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNL 274
            S +    + +  S  + +    +    +  +L  L+    L  ++ + ++       + 
Sbjct: 312 FS-AFLDRLSDTVSARNTSGFREQ----VAAWLEKLSASAELRQQSFAVAADATESCEDR 366

Query: 275 KSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL 311
            +L+   L +  L            +   L      +
Sbjct: 367 VALTWNNLRKTLLV-HQASEGLFDNDTGALLSLGREM 402

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  138 bits (349), Expect = 2e-34
 Identities = 93/469 (19%), Positives = 164/469 (34%), Gaps = 38/469 (8%)

Query: 251 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTN 309
                L L  NS S     +I  L  L +L L  NR+  S+   +     +L+ L +  N
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110

Query: 310 SLSGSIPSEIGNLKSLSGLELADNELSS-SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIG 368
            L  +I      + SL  L+L+ N+     +    GNLT L    L            + 
Sbjct: 111 RLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167

Query: 369 NLK-SLSNLDLSENKLSGSIPHSLGNL-TNLAILYLHSNTLLGSIPREIGNLKSLFELQL 426
           +L  S   LDL    + G    SL    T +  L  H N+L         ++ +L  LQL
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN--MSVNALGHLQL 225

Query: 427 GDNKLSNSISHSLGN----------LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 476
            + KL++     L            L ++TL  +       V   +      +  L + +
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 477 NQLQGSIP------NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQI 530
             +   I       +   L +L+   +       +    + +  ++    LS ++     
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 531 SSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEIGKLSSLI 589
                   +    + +  N+      +   +  +L  + L  N +            ++ 
Sbjct: 346 MVCPPSPSSFTFLNFT-QNVFTDSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMS 403

Query: 590 KLILRRNQL----FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQ 645
            L      L                 +  L+LSSN L+ S+ R L    K+  L+L  N+
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNR 461

Query: 646 FIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSHNN 693
            I  IP  +  L  L EL+++ N L K +P  +   + SL+ + L  N 
Sbjct: 462 -IMSIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  133 bits (336), Expect = 9e-33
 Identities = 95/487 (19%), Positives = 166/487 (34%), Gaps = 56/487 (11%)

Query: 157 IEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSL 215
            +AL L +N +S     ++  LS L  L L+ N ++ S+   +     +L  L + +N L
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL 112

Query: 216 SGSIPSEIGNLKSLSSLALGNNKL-CGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNL 274
             +I      + SL  L L  N      +    GNLT L  L L    F       + +L
Sbjct: 113 Q-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169

Query: 275 K-SLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADN 333
             S  +L+L    + G    SL    N   L+L  +  S        ++ +L  L+L++ 
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 334 ELSSSIPHYLGNLT-------NLAAFYLYKNSLSGSIPSEIGNLK--------SLSNLDL 378
           +L+      L            L    L     +     ++            ++ NL +
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288

Query: 379 SENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHS 438
           +E        +S   L +L I ++ +   L S          +    L  +         
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC 348

Query: 439 LGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNL-RNLTNLIRLRL 497
             + +  T L    N  +  + +    L +L  L L  N L+ +   +     N+  L  
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLET 407

Query: 498 NRNHLTC----NISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGS 553
               L          +      +  ++LS N     ++           F          
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSN----MLTG--------SVFR--------C 447

Query: 554 LPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLE 613
           LPP      ++ V+DL  N  I  IP ++  L +L +L +  NQL          L  L+
Sbjct: 448 LPP------KVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQ 500

Query: 614 YLDLSSN 620
           Y+ L  N
Sbjct: 501 YIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  127 bits (320), Expect = 8e-31
 Identities = 82/458 (17%), Positives = 164/458 (35%), Gaps = 30/458 (6%)

Query: 91  NVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPP 149
           + N I  +  P I  +S+L+ L LS N    ++   +      L++L +S N+    I  
Sbjct: 60  SQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN-ISC 117

Query: 150 QIGHLSYIEALHLFKNQL-SGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNL-TNLAI 207
               ++ +  L L  N     P+  E G L+ L  L L++   +      + +L  +  +
Sbjct: 118 --CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCIL 175

Query: 208 LYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLT----NLDTLYLRNNSF 263
           L L +  + G     +    +     + +     S+ + +         L  + L + + 
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235

Query: 264 SSSIPSEIGNLKSLSILELGENRLNGSIP-----LSLGNLTNLDTLYLYTNSLSGSIPSE 318
              +       +  ++L +    +  +               ++ L +Y  +++  I  E
Sbjct: 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE 295

Query: 319 IGN-----LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 373
                   LKSL    + +     S          +    L  +           +  S 
Sbjct: 296 EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF 355

Query: 374 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 433
           + L+ ++N  + S+      L  L  L L  N  L +  +     K++  L+  D  L++
Sbjct: 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNS 414

Query: 434 SISHSLGNLTH----MTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN-LRN 488
             SH+          + +L L  N L+G +   L    K+ +L L +N++  SIP  + +
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTH 471

Query: 489 LTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 526
           L  L  L +  N L       F     L +I L  N +
Sbjct: 472 LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 99.6 bits (248), Expect = 7e-22
 Identities = 66/422 (15%), Positives = 137/422 (32%), Gaps = 45/422 (10%)

Query: 303 TLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGS 362
            +     +L+  +P ++        L L+ N +S      +  L+ L    L  N +  S
Sbjct: 35  MVDYSNRNLT-HVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-S 90

Query: 363 IPSEI-GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPR--EIGNLK 419
           +   +    + L  LD+S N+L  +I      + +L  L L  N     +P   E GNL 
Sbjct: 91  LDFHVFLFNQDLEYLDVSHNRLQ-NIS--CCPMASLRHLDLSFN-DFDVLPVCKEFGNLT 146

Query: 420 SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQL 479
            L  L L   K        L  + H+ L  +  +               L    +   + 
Sbjct: 147 KLTFLGLSAAKFR---QLDLLPVAHLHLSCILLD---------------LVSYHIKGGET 188

Query: 480 QGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPN 539
           +        + +L+    +   +  N+S +   H +L+ I L+  N    ++        
Sbjct: 189 ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG 248

Query: 540 LGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLF 599
               +V++ +I  +    +          +   +I                L +      
Sbjct: 249 PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN--------------LTITERIDR 294

Query: 600 GQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIH 659
            +      +L  L    + +     S         +++   LS +       +       
Sbjct: 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS 354

Query: 660 LSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDF--IPRCFEEMNGLLYIDISYNE 717
            + L+ + N     +      ++ L+ L L  N L +F  +    + M+ L  +D+S N 
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414

Query: 718 LH 719
           L+
Sbjct: 415 LN 416

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  129 bits (327), Expect = 4e-33
 Identities = 67/310 (21%), Positives = 123/310 (39%), Gaps = 24/310 (7%)

Query: 133 LKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLK 192
           L+ +  S      ++P  +        L L  N+++     +   L +L+ L L +N + 
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 193 GSIPP-SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLT 251
             I P +   L  L  LYL  N L   +P ++   K+L  L +  N++          L 
Sbjct: 90  -KISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 252 NLDTLYLRNNSFSSS-IPSEI-GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTN 309
            +  + L  N   SS I +     +K LS + + +  +  +IP  L    +L  L+L  N
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGN 202

Query: 310 SLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIG 368
            ++  + +     L +L+ L L+ N +S+     L N  +L   +L  N L   +P  + 
Sbjct: 203 KIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260

Query: 369 NLKSLSNLDLSENKLSG------SIPHSLGNLTNLAILYLHSNTL-LGSIPREI-GNLKS 420
           + K +  + L  N +S         P       + + + L SN +    I       +  
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320

Query: 421 LFELQLGDNK 430
              +QLG+ K
Sbjct: 321 RAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  128 bits (324), Expect = 1e-32
 Identities = 67/309 (21%), Positives = 121/309 (39%), Gaps = 23/309 (7%)

Query: 228 SLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRL 287
            L  +   +  L   +P  L    +   L L+NN  +     +  NLK+L  L L  N++
Sbjct: 32  HLRVVQCSDLGL-EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 288 NGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLT 347
           +   P +   L  L+ LYL  N L   +P ++   K+L  L + +NE++         L 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 348 NLAAFYLYKNSL-SGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSN 405
            +    L  N L S  I +     +K LS + +++  ++ +IP  L    +L  L+L  N
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGN 202

Query: 406 TLLGSIPREI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELG 464
             +  +       L +L +L L  N +S   + SL N  H+  L L +N L   +P  L 
Sbjct: 203 -KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260

Query: 465 NLVKLTMLTLSDNQLQ-------GSIPNLRNLTNLIRLRLNRNHLTCNI--SESFGIHPK 515
           +   + ++ L +N +                  +   + L  N +        +F     
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320

Query: 516 LTFIDLSHN 524
              + L + 
Sbjct: 321 RAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  122 bits (309), Expect = 1e-30
 Identities = 67/287 (23%), Positives = 116/287 (40%), Gaps = 23/287 (8%)

Query: 109 LKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQL 167
              LDL +N  +        NL  L  L L  N+ S +I P     L  +E L+L KNQL
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQL 112

Query: 168 SGPIPHEVGGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSL-SGSIPSEI-G 224
              +P ++    +L EL +  N +   +       L  + ++ L  N L S  I +    
Sbjct: 113 KE-LPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 225 NLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELG 283
            +K LS + + +  +  +IP   G   +L  L+L  N   + + +     L +L+ L L 
Sbjct: 169 GMKKLSYIRIADTNI-TTIP--QGLPPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLS 224

Query: 284 ENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS------ 337
            N ++     SL N  +L  L+L  N L   +P  + + K +  + L +N +S+      
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283

Query: 338 SIPHYLGNLTNLAAFYLYKNSLS-GSIPSEI-GNLKSLSNLDLSENK 382
             P Y     + +   L+ N +    I       +   + + L   K
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  122 bits (309), Expect = 1e-30
 Identities = 63/285 (22%), Positives = 115/285 (40%), Gaps = 23/285 (8%)

Query: 252 NLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL 311
           +L  +   +      +P ++      ++L+L  N++         NL NL TL L  N +
Sbjct: 32  HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 312 SGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GN 369
           S  I       L  L  L L+ N+L          L  L    +++N ++  +   +   
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL---RVHENEIT-KVRKSVFNG 143

Query: 370 LKSLSNLDLSENKLSGSI--PHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLG 427
           L  +  ++L  N L  S     +   +  L+ + +     + +IP+  G   SL EL L 
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQ--GLPPSLTELHLD 200

Query: 428 DNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN-L 486
            NK++   + SL  L ++  L L  N++S V    L N   L  L L++N+L   +P  L
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259

Query: 487 RNLTNLIRLRLNRNHLTCNISESFGIH------PKLTFIDLSHNN 525
            +   +  + L+ N+++   S  F            + + L  N 
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  119 bits (300), Expect = 2e-29
 Identities = 72/331 (21%), Positives = 126/331 (38%), Gaps = 43/331 (12%)

Query: 396 NLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNAL 455
           +L ++      L   +P+++        L L +NK++        NL ++  L L +N +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 456 SGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPK 515
           S + P     LVKL  L LS NQL+     +     L  LR++ N +T      F    +
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQ 146

Query: 516 LTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHII 575
           +  ++L  N     + S        G F                   +L  I ++  +I 
Sbjct: 147 MIVVELGTN----PLKSSG---IENGAFQ---------------GMKKLSYIRIADTNI- 183

Query: 576 GKIPSEIGKLSSLIKLILRRNQLFGQLPSE-LGSLIQLEYLDLSSNRLSNSIPRSLGNLV 634
             IP   G   SL +L L  N++  ++ +  L  L  L  L LS N +S     SL N  
Sbjct: 184 TTIPQ--GLPPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240

Query: 635 KLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQ-------ICNMRSLEML 687
            L  L+L+ N+ + ++P  L    ++  + L +N +   I S             S   +
Sbjct: 241 HLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNI-SAIGSNDFCPPGYNTKKASYSGV 298

Query: 688 NLSHNNLSDFI--PRCFEEMNGLLYIDISYN 716
           +L  N +  +   P  F  +     + +   
Sbjct: 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  116 bits (292), Expect = 2e-28
 Identities = 70/351 (19%), Positives = 124/351 (35%), Gaps = 57/351 (16%)

Query: 276 SLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNEL 335
            L +++  +  L   +P  L    +   L L  N ++     +  NLK+L  L L +N++
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 336 SSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLT 395
           S   P     L  L   YL KN L   +P ++   K+L  L + EN+++         L 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 396 NLAILYLHSNTL-LGSIPREI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDN 453
            + ++ L +N L    I       +K L  +++ D  ++        +LT    L L  N
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGN 202

Query: 454 ALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFG 511
            ++ V    L  L  L  L LS N +  ++ N  L N  +L  L LN N L   +     
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260

Query: 512 IHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSA 571
            H  +  + L +N     IS+              + +     P      +    + L +
Sbjct: 261 DHKYIQVVYLHNN----NISA--------------IGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 572 NHI-IGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNR 621
           N +   +I                    F  +            + L + +
Sbjct: 303 NPVQYWEIQPST----------------FRCVYV-------RAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.0 bits (242), Expect = 6e-22
 Identities = 53/256 (20%), Positives = 103/256 (40%), Gaps = 40/256 (15%)

Query: 469 LTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 526
             +L L +N++   I +   +NL NL  L L  N ++     +F    KL  + LS N  
Sbjct: 54  TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ- 111

Query: 527 YGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GKL 585
                                   +  LP ++     L  + +  N I  K+   +   L
Sbjct: 112 ------------------------LKELPEKM--PKTLQELRVHENEI-TKVRKSVFNGL 144

Query: 586 SSLIKLILRRNQL-FGQLPSE-LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLST 643
           + +I + L  N L    + +     + +L Y+ ++   ++ +IP+ L     L  L+L  
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDG 201

Query: 644 NQFIQEIPIK-LEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCF 702
           N+ I ++    L+ L +L++L LS N +       + N   L  L+L++N L   +P   
Sbjct: 202 NK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGL 259

Query: 703 EEMNGLLYIDISYNEL 718
            +   +  + +  N +
Sbjct: 260 ADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.8 bits (226), Expect = 7e-20
 Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 12/212 (5%)

Query: 511 GIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVIDL 569
            + P    +DL +N        D+    NL T  +  NN I  + P       +L  + L
Sbjct: 49  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYL 107

Query: 570 SANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSI--P 627
           S N +  ++P ++    +L +L +  N++     S    L Q+  ++L +N L +S    
Sbjct: 108 SKNQL-KELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164

Query: 628 RSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQI-CNMRSLEM 686
            +   + KL Y+ ++    I  IP  L     L+EL L  N +  ++ +     + +L  
Sbjct: 165 GAFQGMKKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGNKI-TKVDAASLKGLNNLAK 220

Query: 687 LNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
           L LS N++S            L  + ++ N+L
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.1 bits (219), Expect = 6e-19
 Identities = 40/205 (19%), Positives = 85/205 (41%), Gaps = 16/205 (7%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSF-SGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQ 150
           N+I  +       ++++  ++L +N   S  I       +  L ++ ++    +  IP  
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ- 188

Query: 151 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILY 209
            G    +  LHL  N+++      + GL++L +L L+ N +  ++   SL N  +L  L+
Sbjct: 189 -GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELH 246

Query: 210 LHNNSLSGSIPSEIGNLKSLSSLALGNNKL------CGSIPLFLGNLTNLDTLYLRNNSF 263
           L+NN L   +P  + + K +  + L NN +          P +     +   + L +N  
Sbjct: 247 LNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

Query: 264 S-SSIPSEI-GNLKSLSILELGENR 286
               I       +   + ++LG  +
Sbjct: 306 QYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.1 bits (180), Expect = 6e-14
 Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 8/159 (5%)

Query: 563 QLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRL 622
            L V+  S   +  K+P ++        L L+ N++      +  +L  L  L L +N++
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 623 SNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMR 682
           S   P +   LVKL  L LS NQ ++E+P K+     L EL +  N + K   S    + 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQ-LKELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 683 SLEMLNLSHNNLSDFI--PRCFEEMNGLLYIDISYNELH 719
            + ++ L  N L         F+ M  L YI I+   + 
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  124 bits (313), Expect = 2e-31
 Identities = 55/261 (21%), Positives = 103/261 (39%), Gaps = 12/261 (4%)

Query: 252 NLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL 311
           +   +   +   +S +P+ I    S + LEL  N+L          LT L  L L +N L
Sbjct: 8   SGTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 312 S-GSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-G 368
           S     S+      SL  L+L+ N + + +      L  L       ++L       +  
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 369 NLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLG 427
           +L++L  LD+S      +       L++L +L +  N+   +   +I   L++L  L L 
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 428 DNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN-- 485
             +L      +  +L+ + +L +  N    +       L  L +L  S N +  +     
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQE 242

Query: 486 LRNL-TNLIRLRLNRNHLTCN 505
           L++  ++L  L L +N   C 
Sbjct: 243 LQHFPSSLAFLNLTQNDFACT 263

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  110 bits (278), Expect = 7e-27
 Identities = 57/258 (22%), Positives = 95/258 (36%), Gaps = 13/258 (5%)

Query: 134 KFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFL-- 191
             +  ++   +  +P  I   S    L L  N+L          L+ L +L+L+SN L  
Sbjct: 10  TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 192 KGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPL-FLGNL 250
           KG    S    T+L  L L  N +  ++ S    L+ L  L   ++ L          +L
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 251 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSI-PLSLGNLTNLDTLYLYTN 309
            NL  L + +     +       L SL +L++  N    +  P     L NL  L L   
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 310 SLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI- 367
            L   +      +L SL  L ++ N   S        L +L       N +  +   +  
Sbjct: 186 QLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQEL 243

Query: 368 -GNLKSLSNLDLSENKLS 384
                SL+ L+L++N  +
Sbjct: 244 QHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  109 bits (274), Expect = 2e-26
 Identities = 52/255 (20%), Positives = 99/255 (38%), Gaps = 26/255 (10%)

Query: 109 LKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLS 168
              L+L SN            L+ L  L LS+N  S +                      
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC------------------- 70

Query: 169 GPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEI-GNLK 227
                   G +SL  L L+ N +  ++  +   L  L  L   +++L       +  +L+
Sbjct: 71  ---SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126

Query: 228 SLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENR 286
           +L  L + +     +       L++L+ L +  NSF  +   +I   L++L+ L+L + +
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 287 LNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNL 346
           L    P +  +L++L  L +  N+           L SL  L+ + N + +S    L + 
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246

Query: 347 -TNLAAFYLYKNSLS 360
            ++LA   L +N  +
Sbjct: 247 PSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  106 bits (266), Expect = 3e-25
 Identities = 56/233 (24%), Positives = 89/233 (38%), Gaps = 29/233 (12%)

Query: 490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 549
           ++  RL L  N L       F    +LT + LS N                         
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS---------------------- 65

Query: 550 IIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSE--LG 607
             G        ++ L  +DLS N +I  + S    L  L  L  + + L  Q+       
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFL 123

Query: 608 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK-LEKLIHLSELDLS 666
           SL  L YLD+S      +       L  L  L ++ N F +        +L +L+ LDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 667 HNFLGKEIPSQI-CNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
              L +++      ++ SL++LN+SHNN        ++ +N L  +D S N +
Sbjct: 184 QCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  105 bits (264), Expect = 5e-25
 Identities = 69/299 (23%), Positives = 97/299 (32%), Gaps = 59/299 (19%)

Query: 404 SNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALS--GVIPE 461
           ++  L S+P  I    S   L+L  NKL +        LT +T L+L  N LS  G   +
Sbjct: 15  NSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72

Query: 462 ELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISES-FGIHPKLTFID 520
                  L  L LS N +     N   L  L  L    ++L      S F     L ++D
Sbjct: 73  SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132

Query: 521 LSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPS 580
           +SH +                                I                      
Sbjct: 133 ISHTH-------------------------TRVAFNGI---------------------- 145

Query: 581 EIGKLSSLIKLILRRNQLFGQLPSE-LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYL 639
               LSSL  L +  N        +    L  L +LDLS  +L    P +  +L  L  L
Sbjct: 146 -FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204

Query: 640 NLSTNQFIQEIPIK-LEKLIHLSELDLSHNFLGKEIPSQICN--MRSLEMLNLSHNNLS 695
           N+S N     +     + L  L  LD S N +      Q       SL  LNL+ N+ +
Sbjct: 205 NMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHI-MTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  102 bits (256), Expect = 6e-24
 Identities = 51/234 (21%), Positives = 93/234 (39%), Gaps = 11/234 (4%)

Query: 86  SINLTNVNQIFGIIPPQIGNISKLKYLDLSSN--SFSGTIPPQIGNLSMLKFLYLSANQF 143
            + L + N++  +       +++L  L LSSN  SF G         + LK+L LS N  
Sbjct: 32  RLELES-NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90

Query: 144 SGRIPPQIGHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSLGNL 202
              +      L  +E L    + L       V   L +L  L ++    + +       L
Sbjct: 91  I-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149

Query: 203 TNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIP-LFLGNLTNLDTLYLRN 260
           ++L +L +  NS   +   +I   L++L+ L L   +L   +      +L++L  L + +
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSH 208

Query: 261 NSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSL--GNLTNLDTLYLYTNSLS 312
           N+F S        L SL +L+   N +  +          ++L  L L  N  +
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  122 bits (308), Expect = 2e-30
 Identities = 65/326 (19%), Positives = 118/326 (36%), Gaps = 34/326 (10%)

Query: 180 SLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL 239
            L  +  +   LK ++P  +    +  +L L NN +S     +   L+ L +L L NNK+
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 240 CGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLT 299
                     L  L  LY+  N     IP  +    SL  L + +NR+          L 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHL-VEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 300 NLDTLYLYTNSL-SGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS 358
           N++ + +  N L +        +   L+ L +++ +L+         L  L   +L  N 
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNEL---HLDHNK 204

Query: 359 LSGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGN 417
           +  +I  E       L  L L  N++      SL  L  L  L+L +N  L  +P  + +
Sbjct: 205 IQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPD 262

Query: 418 LKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 477
           LK L  + L  N ++                 +  N    V             ++L +N
Sbjct: 263 LKLLQVVYLHTNNITK----------------VGVNDFCPVGF--GVKRAYYNGISLFNN 304

Query: 478 QLQ-GSIPN--LRNLTNLIRLRLNRN 500
            +    +     R +T+ + ++    
Sbjct: 305 PVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  120 bits (303), Expect = 6e-30
 Identities = 66/310 (21%), Positives = 112/310 (36%), Gaps = 25/310 (8%)

Query: 133 LKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLK 192
           L+ +  S       +P +I        L L  N +S     +  GL  L  L L +N + 
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 193 GSIPP-SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLT 251
             I   +   L  L  LY+  N L   IP  +    SL  L + +N++          L 
Sbjct: 92  -KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 252 NLDTLYLRNNSF-SSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNS 310
           N++ + +  N   +S       +   L+ L + E +L   IP  L     L+ L+L  N 
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNK 204

Query: 311 LSGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN 369
           +  +I  E       L  L L  N++       L  L  L   +L  N LS  +P+ + +
Sbjct: 205 IQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262

Query: 370 LKSLSNLDLSENKLSGSIP-------HSLGNLTNLAILYLHSNTL-LGSIPREI-GNLKS 420
           LK L  + L  N ++  +                   + L +N +    +       +  
Sbjct: 263 LKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD 321

Query: 421 LFELQLGDNK 430
              +Q G+ K
Sbjct: 322 RLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  118 bits (298), Expect = 3e-29
 Identities = 69/330 (20%), Positives = 123/330 (37%), Gaps = 42/330 (12%)

Query: 396 NLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNAL 455
           +L ++      L  ++P+EI        L L +N +S         L H+  L L +N +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 456 SGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPK 515
           S +  +    L KL  L +S N L    PNL   ++L+ LR++ N +       F     
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRN 148

Query: 516 LTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHII 575
           +  I++  N     + +                       P   D  +L+ + +S   + 
Sbjct: 149 MNCIEMGGN----PLENSG-------------------FEPGAFDGLKLNYLRISEAKLT 185

Query: 576 GKIPSEIGKLSSLIKLILRRNQLFGQLPSE-LGSLIQLEYLDLSSNRLSNSIPRSLGNLV 634
             IP ++    +L +L L  N++   +  E L    +L  L L  N++      SL  L 
Sbjct: 186 -GIPKDL--PETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241

Query: 635 KLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMR------SLEMLN 688
            L  L+L  N+ +  +P  L  L  L  + L  N + K   +  C +           ++
Sbjct: 242 TLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300

Query: 689 LSHNNLSDFI--PRCFEEMNGLLYIDISYN 716
           L +N +  +   P  F  +   L I     
Sbjct: 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  113 bits (284), Expect = 2e-27
 Identities = 65/286 (22%), Positives = 105/286 (36%), Gaps = 22/286 (7%)

Query: 109 LKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQL 167
              LDL +N  S         L  L  L L  N+ S +I  +    L  ++ L++ KN L
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHL 114

Query: 168 SGPIPHEVGGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSL-SGSIPSEIGN 225
              IP  +   SSL EL +  N ++  +P      L N+  + +  N L +        +
Sbjct: 115 VE-IPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 226 LKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGE 284
              L+ L +   KL   IP        L+ L+L +N    +I  E       L  L LG 
Sbjct: 171 GLKLNYLRISEAKL-TGIP--KDLPETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGH 226

Query: 285 NRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS------S 338
           N++      SL  L  L  L+L  N LS  +P+ + +LK L  + L  N ++        
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285

Query: 339 IPHYLGNLTNLAAFYLYKNSLS-GSIPSEI-GNLKSLSNLDLSENK 382
              +           L+ N +    +       +     +     K
Sbjct: 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  111 bits (280), Expect = 7e-27
 Identities = 60/284 (21%), Positives = 110/284 (38%), Gaps = 22/284 (7%)

Query: 252 NLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL 311
           +L  +   +    + +P EI      ++L+L  N ++         L +L  L L  N +
Sbjct: 34  HLRVVQCSDLGLKA-VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 312 SGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GN 369
           S  I  +    L+ L  L ++ N L    P+   +L  L    ++ N +   +P  +   
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVEL---RIHDNRIR-KVPKGVFSG 145

Query: 370 LKSLSNLDLSENKL-SGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGD 428
           L++++ +++  N L +        +   L  L +     L  IP+     ++L EL L  
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPK--DLPETLNELHLDH 202

Query: 429 NKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLR 487
           NK+       L   + +  L L  N +  +    L  L  L  L L +N+L   +P  L 
Sbjct: 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261

Query: 488 NLTNLIRLRLNRNHLTCNISESF------GIHPKLTFIDLSHNN 525
           +L  L  + L+ N++T      F              I L +N 
Sbjct: 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  107 bits (268), Expect = 3e-25
 Identities = 63/349 (18%), Positives = 109/349 (31%), Gaps = 54/349 (15%)

Query: 276 SLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNEL 335
            L +++  +  L  ++P  +    +   L L  N +S     +   L+ L  L L +N++
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 336 SSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLT 395
           S         L  L   Y+ KN L   IP  +    SL  L + +N++          L 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 396 NLAILYLHSNTL-LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNA 454
           N+  + +  N L          +   L  L++ + KL+         L     L L  N 
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNE---LHLDHNK 204

Query: 455 LSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGI 512
           +  +  E+L    KL  L L  NQ++  I N  L  L  L  L L+ N L+  +      
Sbjct: 205 IQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262

Query: 513 HPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSAN 572
              L  + L  NN                     V              +  + I L  N
Sbjct: 263 LKLLQVVYLHTNNI------------------TKVGVNDFCPVGFGVKRAYYNGISLFNN 304

Query: 573 HIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNR 621
            +                        +   P+    +     +   + +
Sbjct: 305 PV----------------------PYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 95.5 bits (238), Expect = 2e-21
 Identities = 56/256 (21%), Positives = 105/256 (41%), Gaps = 41/256 (16%)

Query: 469 LTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 526
            T+L L +N +   +     + L +L  L L  N ++    ++F    KL  + +S N+ 
Sbjct: 56  TTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH- 113

Query: 527 YGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GKL 585
                                   +  +PP +   S L  + +  N I  K+P  +   L
Sbjct: 114 ------------------------LVEIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGL 146

Query: 586 SSLIKLILRRNQL-FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN 644
            ++  + +  N L            ++L YL +S  +L+  IP+ L     L+ L+L  N
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHN 203

Query: 645 QFIQEIPIK-LEKLIHLSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCF 702
           + IQ I ++ L +   L  L L HN + + I +     + +L  L+L +N LS  +P   
Sbjct: 204 K-IQAIELEDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLSR-VPAGL 260

Query: 703 EEMNGLLYIDISYNEL 718
            ++  L  + +  N +
Sbjct: 261 PDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 95.1 bits (237), Expect = 3e-21
 Identities = 55/260 (21%), Positives = 98/260 (37%), Gaps = 23/260 (8%)

Query: 86  SINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSG 145
           ++ L N N+I  I       + KL+ L +S N     IPP +   S L  L +  N+   
Sbjct: 82  ALVLVN-NKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIR- 136

Query: 146 RIPPQI-GHLSYIEALHLFKNQL-SGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLT 203
           ++P  +   L  +  + +  N L +            LN L ++   L   IP  L    
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PE 193

Query: 204 NLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS 262
            L  L+L +N +  +I  E       L  L LG+N++       L  L  L  L+L NN 
Sbjct: 194 TLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252

Query: 263 FSSSIPSEIGNLKSLSILELGENRLNGSIP-------LSLGNLTNLDTLYLYTNSLS-GS 314
             S +P+ + +LK L ++ L  N +   +                 + + L+ N +    
Sbjct: 253 L-SRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310

Query: 315 IPSEI-GNLKSLSGLELADN 333
           +       +     ++  + 
Sbjct: 311 VQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 39/254 (15%)

Query: 469 LTMLTLSDNQLQGSIPNLRNL-TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFY 527
           L ++  SD  L+ ++P  + +  +   L L  N ++    + F     L  + L +N   
Sbjct: 35  LRVVQCSDLGLK-AVP--KEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-- 89

Query: 528 GQISSDWGKCPNLGTFDVSVNNIIGSLPPEI-GDSSQLHVIDLSANHIIGKIPSEIGKLS 586
                                  I  +  +      +L  + +S NH++ +IP  +   S
Sbjct: 90  -----------------------ISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PS 123

Query: 587 SLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNS-IPRSLGNLVKLHYLNLSTNQ 645
           SL++L +  N++          L  +  +++  N L NS       + +KL+YL +S  +
Sbjct: 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183

Query: 646 FIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQI-CNMRSLEMLNLSHNNLSDFIPRCFEE 704
            +  IP  L     L+EL L HN + + I  +       L  L L HN +          
Sbjct: 184 -LTGIPKDL--PETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239

Query: 705 MNGLLYIDISYNEL 718
           +  L  + +  N+L
Sbjct: 240 LPTLRELHLDNNKL 253

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.7 bits (166), Expect = 3e-12
 Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 9/158 (5%)

Query: 563 QLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRL 622
            L V+  S   +   +P EI        L L+ N +      +   L  L  L L +N++
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 623 SNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMR 682
           S    ++   L KL  L +S N  + EIP  L     L EL +  N + K        +R
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNH-LVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 683 SLEMLNLSHNNLSDFI--PRCFEEMNGLLYIDISYNEL 718
           ++  + +  N L +    P  F+ +  L Y+ IS  +L
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKL 184

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  122 bits (307), Expect = 3e-30
 Identities = 65/268 (24%), Positives = 107/268 (39%), Gaps = 18/268 (6%)

Query: 251 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNS 310
             + +L L NN  +    S++    +L  L L  N +N     S  +L +L+ L L  N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 311 LSGSIPSEI-GNLKSLSGLELADNELSSSIPHYL-GNLTNLAAFYLYKNSLSGSIPSEI- 367
           LS ++ S     L SL+ L L  N   +     L  +LT L    +        I  +  
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 368 GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQL 426
             L  L  L++  + L    P SL ++ N++ L LH       +         S+  L+L
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLEL 229

Query: 427 GDNKLSNS--------ISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 478
            D  L            ++SL        + + D +L   + + L  +  L  L  S NQ
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQ 288

Query: 479 LQGSIPN--LRNLTNLIRLRLNRNHLTC 504
           L+ S+P+     LT+L ++ L+ N   C
Sbjct: 289 LK-SVPDGIFDRLTSLQKIWLHTNPWDC 315

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  117 bits (296), Expect = 7e-29
 Identities = 64/324 (19%), Positives = 121/324 (37%), Gaps = 20/324 (6%)

Query: 184 LALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSI 243
             + S   + S   +  +     I    + SL+ SIPS +   +++ SL L NN++    
Sbjct: 12  GVIISLSKEESSNQASLSCDRNGICKGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYIS 68

Query: 244 PLFLGNLTNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSL-GNLTNL 301
              L    NL  L L +N  ++ I  +   +L SL  L+L  N L  ++  S    L++L
Sbjct: 69  NSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSL 126

Query: 302 DTLYLYTNSLSGSIPSEI-GNLKSLSGLELADNELSSSIPHY-LGNLTNLAAFYLYKNSL 359
             L L  N       + +  +L  L  L + + +  + I       LT L    +  + L
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

Query: 360 SGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI--- 415
             S   +   +++++S+L L   +    +   +   +++  L L    L      E+   
Sbjct: 187 Q-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245

Query: 416 -----GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLT 470
                    +   +++ D  L   +   L  ++ +  L    N L  V       L  L 
Sbjct: 246 ETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ 304

Query: 471 MLTLSDNQLQGSIPNLRNLTNLIR 494
            + L  N    S P +  L+  + 
Sbjct: 305 KIWLHTNPWDCSCPRIDYLSRWLN 328

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  112 bits (283), Expect = 4e-27
 Identities = 63/285 (22%), Positives = 112/285 (39%), Gaps = 22/285 (7%)

Query: 113 DLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPI 171
             SS S + +IP  +     +K L LS N+ +  I          ++AL L  N ++  I
Sbjct: 37  KGSSGSLN-SIPSGL--TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINT-I 91

Query: 172 PHEV-GGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSLSGSIPSEI-GNLKS 228
             +    L SL  L L+ N+L  ++  S    L++L  L L  N       + +  +L  
Sbjct: 92  EEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150

Query: 229 LSSLALGNNKLCGSIPL-FLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRL 287
           L  L +GN      I       LT L+ L +  +   S  P  + +++++S L L   + 
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210

Query: 288 NGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI--------GNLKSLSGLELADNELSSSI 339
              + + +   ++++ L L    L     SE+            +   +++ D  L   +
Sbjct: 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-FQV 269

Query: 340 PHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKL 383
              L  ++ L      +N L  S+P  I   L SL  + L  N  
Sbjct: 270 MKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  106 bits (267), Expect = 5e-25
 Identities = 51/287 (17%), Positives = 96/287 (33%), Gaps = 40/287 (13%)

Query: 443 THMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRN 500
             +  L L +N ++ +   +L   V L  L L+ N +  +I      +L +L  L L+ N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 501 HLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEI-- 558
           +L+   S  F     LTF++L  N                            +L      
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNP-------------------------YKTLGETSLF 145

Query: 559 GDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDL 617
              ++L ++ +       KI  +    L+ L +L +  + L    P  L S+  + +L L
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205

Query: 618 SSNRLSNSIPRSLGNLVKLHYLNLSTNQF----IQEIPI----KLEKLIHLSELDLSHNF 669
              +    +   +     +  L L           E+       L K      + ++   
Sbjct: 206 HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265

Query: 670 LGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYN 716
           L  ++   +  +  L  L  S N L       F+ +  L  I +  N
Sbjct: 266 L-FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  104 bits (262), Expect = 2e-24
 Identities = 55/255 (21%), Positives = 98/255 (38%), Gaps = 19/255 (7%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQI 151
           N+I  I    +     L+ L L+SN  + TI      +L  L+ L LS N  S  +    
Sbjct: 62  NRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSW 119

Query: 152 -GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPP-SLGNLTNLAIL 208
              LS +  L+L  N         +   L+ L  L + +      I       LT L  L
Sbjct: 120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179

Query: 209 YLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSI 267
            +  + L  S   +   +++++S L L   +    + +F+   ++++ L LR+    +  
Sbjct: 180 EIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238

Query: 268 PSEI--------GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI 319
            SE+            +   +++ +  L   +   L  ++ L  L    N L  S+P  I
Sbjct: 239 FSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGI 296

Query: 320 -GNLKSLSGLELADN 333
              L SL  + L  N
Sbjct: 297 FDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 99.8 bits (249), Expect = 1e-22
 Identities = 59/281 (20%), Positives = 96/281 (34%), Gaps = 19/281 (6%)

Query: 377 DLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSIS 436
             S   L+ SIP  L     +  L L +N +      ++    +L  L L  N ++    
Sbjct: 37  KGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 93

Query: 437 HSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIR 494
            S  +L  +  L L  N LS +       L  LT L L  N  +         +LT L  
Sbjct: 94  DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153

Query: 495 LRLNRNHLTCNISE-SFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGS 553
           LR+        I    F     L  +++  ++             N+    + +   I  
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-L 212

Query: 554 LPPEIGDS-SQLHVIDLSANHIIGKIPSEI--------GKLSSLIKLILRRNQLFGQLPS 604
           L     D  S +  ++L    +     SE+         K  +   + +    LF Q+  
Sbjct: 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMK 271

Query: 605 ELGSLIQLEYLDLSSNRLSNSIPRS-LGNLVKLHYLNLSTN 644
            L  +  L  L+ S N+L  S+P      L  L  + L TN
Sbjct: 272 LLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 78.2 bits (193), Expect = 1e-15
 Identities = 39/183 (21%), Positives = 67/183 (36%), Gaps = 7/183 (3%)

Query: 548 NNIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSE 605
           NN I  +          L  + L++N I   I  +    L SL  L L  N L   L S 
Sbjct: 61  NNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYL-SNLSSS 118

Query: 606 L-GSLIQLEYLDLSSNRLSNSIPRSL-GNLVKLHYLNLSTNQFIQEIPIK-LEKLIHLSE 662
               L  L +L+L  N        SL  +L KL  L +       +I  K    L  L E
Sbjct: 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178

Query: 663 LDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPI 722
           L++  + L    P  + +++++  L L        +    +  + +  +++   +L    
Sbjct: 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238

Query: 723 PNS 725
            + 
Sbjct: 239 FSE 241

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 27/149 (18%), Positives = 44/149 (29%), Gaps = 21/149 (14%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQI 151
           + +    P  + +I  + +L L        +        S ++ L L             
Sbjct: 184 SDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT---FHF 239

Query: 152 GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH 211
             LS  E   L K               +   + +T   L   +   L  ++ L  L   
Sbjct: 240 SELSTGETNSLIK-------------KFTFRNVKITDESLF-QVMKLLNQISGLLELEFS 285

Query: 212 NNSLSGSIPSEI-GNLKSLSSLALGNNKL 239
            N L  S+P  I   L SL  + L  N  
Sbjct: 286 RNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  114 bits (287), Expect = 3e-28
 Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 10/221 (4%)

Query: 290 SIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNL 349
           ++P+ +        ++L+ N +S    +     ++L+ L L  N L+         L  L
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 350 AAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLSGSIPH-SLGNLTNLAILYLHSNTL 407
               L  N+   S+       L  L  L L    L   +       L  L  LYL  N  
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDN-A 140

Query: 408 LGSIPREI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNL 466
           L ++P +   +L +L  L L  N++S+    +   L  +  L L+ N ++ V P    +L
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 467 VKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCN 505
            +L  L L  N L  ++P   L  L  L  LRLN N   C+
Sbjct: 201 GRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCD 240

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  111 bits (280), Expect = 3e-27
 Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 10/218 (4%)

Query: 314 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKS 372
           ++P  I    +   + L  N +S           NL   +L+ N L+  I +     L  
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLAL 81

Query: 373 LSNLDLSENKLSGSIP-HSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNK 430
           L  LDLS+N    S+   +   L  L  L+L     L  +   +   L +L  L L DN 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNA 140

Query: 431 LSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRN 488
           L      +  +L ++T L L+ N +S V       L  L  L L  N++   +     R+
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRD 199

Query: 489 LTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 526
           L  L+ L L  N+L+   +E+      L ++ L+ N +
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  111 bits (279), Expect = 4e-27
 Identities = 62/231 (26%), Positives = 99/231 (42%), Gaps = 12/231 (5%)

Query: 255 TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGS 314
           T         + +P  I    +   + L  NR++     S     NL  L+L++N L+  
Sbjct: 15  TTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-R 70

Query: 315 IPSEI-GNLKSLSGLELADNELSSSIP-HYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLK 371
           I +     L  L  L+L+DN    S+       L  L   +L +  L   +   +   L 
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLA 129

Query: 372 SLSNLDLSENKLSGSIP-HSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDN 429
           +L  L L +N L  ++P  +  +L NL  L+LH N  + S+P      L SL  L L  N
Sbjct: 130 ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQN 187

Query: 430 KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 480
           ++++   H+  +L  +  L L+ N LS +  E L  L  L  L L+DN   
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  103 bits (259), Expect = 2e-24
 Identities = 57/220 (25%), Positives = 89/220 (40%), Gaps = 13/220 (5%)

Query: 146 RIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPP-SLGNLTN 204
            +P  I   +  + + L  N++S           +L  L L SN L   I   +   L  
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLAL 81

Query: 205 LAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIP--LFLGNLTNLDTLYLRNN 261
           L  L L +N+   S+       L  L +L L    L   +   LF G L  L  LYL++N
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRG-LAALQYLYLQDN 139

Query: 262 SFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI- 319
           +   ++P +   +L +L+ L L  NR++     +   L +LD L L+ N ++  +     
Sbjct: 140 AL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAF 197

Query: 320 GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSL 359
            +L  L  L L  N LS+     L  L  L    L  N  
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  101 bits (254), Expect = 8e-24
 Identities = 63/229 (27%), Positives = 93/229 (40%), Gaps = 31/229 (13%)

Query: 109 LKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLS 168
            + + L  N  S            L  L+L +N  + RI               F     
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAA-----------AFT---- 77

Query: 169 GPIPHEVGGLSSLNELALTSNFLKGSIPPS-LGNLTNLAILYLHNNSLSGSIPSEI-GNL 226
                   GL+ L +L L+ N    S+ P+    L  L  L+L    L   +   +   L
Sbjct: 78  --------GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGL 128

Query: 227 KSLSSLALGNNKLCGSIP-LFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285
            +L  L L +N L  ++P     +L NL  L+L  N  SS        L SL  L L +N
Sbjct: 129 AALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 286 RLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLELADN 333
           R+    P +  +L  L TLYL+ N+LS ++P+E    L++L  L L DN
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 99.3 bits (248), Expect = 5e-23
 Identities = 60/199 (30%), Positives = 91/199 (45%), Gaps = 11/199 (5%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQI 151
           N+I  +          L  L L SN  +  I       L++L+ L LS N     + P  
Sbjct: 42  NRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100

Query: 152 -GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPP-SLGNLTNLAIL 208
              L  +  LHL +  L   +   +  GL++L  L L  N L+ ++P  +  +L NL  L
Sbjct: 101 FHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHL 158

Query: 209 YLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSI 267
           +LH N +S S+P      L SL  L L  N++    P    +L  L TLYL  N+  S++
Sbjct: 159 FLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SAL 216

Query: 268 PSEI-GNLKSLSILELGEN 285
           P+E    L++L  L L +N
Sbjct: 217 PTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.9 bits (247), Expect = 6e-23
 Identities = 52/211 (24%), Positives = 87/211 (41%), Gaps = 11/211 (5%)

Query: 490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDW-GKCPNLGTFDVSVN 548
               R+ L+ N ++   + SF     LT + L  N    +I +        L   D+S N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDN 90

Query: 549 NIIGSLPPEI-GDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSE- 605
             + S+ P       +LH + L    +  ++   +   L++L  L L+ N L   LP + 
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNAL-QALPDDT 148

Query: 606 LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK-LEKLIHLSELD 664
              L  L +L L  NR+S+   R+   L  L  L L  N+ +  +       L  L  L 
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLY 207

Query: 665 LSHNFLGKEIPSQI-CNMRSLEMLNLSHNNL 694
           L  N L   +P++    +R+L+ L L+ N  
Sbjct: 208 LFANNL-SALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 8/176 (4%)

Query: 548 NNIIGSLPPEI-GDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSE 605
            N I  +P         L ++ L +N +  +I +     L+ L +L L  N     +   
Sbjct: 41  GNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99

Query: 606 -LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK-LEKLIHLSEL 663
               L +L  L L    L    P     L  L YL L  N  +Q +P      L +L+ L
Sbjct: 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHL 158

Query: 664 DLSHNFLGKEIPSQI-CNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
            L  N +   +P +    + SL+ L L  N ++   P  F ++  L+ + +  N L
Sbjct: 159 FLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 5/144 (3%)

Query: 578 IPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLH 637
           +P  I   ++  ++ L  N++     +   +   L  L L SN L+     +   L  L 
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 638 YLNLSTNQFIQEIPIK-LEKLIHLSELDLSHNFLGKEIPSQI-CNMRSLEMLNLSHNNLS 695
            L+LS N  ++ +       L  L  L L    L +E+   +   + +L+ L L  N L 
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQ 142

Query: 696 DFIPRCFEEMNGLLYIDISYNELH 719
                 F ++  L ++ +  N + 
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 43/170 (25%), Positives = 66/170 (38%), Gaps = 7/170 (4%)

Query: 553 SLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQL 612
           ++P  I   +    I L  N I     +      +L  L L  N L     +    L  L
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 613 EYLDLSSNRLSNSIP-RSLGNLVKLHYLNLSTNQFIQEIPIK-LEKLIHLSELDLSHNFL 670
           E LDLS N    S+   +   L +LH L+L     +QE+       L  L  L L  N L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNAL 141

Query: 671 GKEIPSQI-CNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719
            + +P     ++ +L  L L  N +S    R F  ++ L  + +  N + 
Sbjct: 142 -QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  117 bits (295), Expect = 3e-28
 Identities = 61/241 (25%), Positives = 96/241 (39%), Gaps = 13/241 (5%)

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLF-LGNLTN 252
            +P  +   TN  +L LH N +     +   +L+ L  L L  N +  +I +     L N
Sbjct: 57  EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLAN 113

Query: 253 LDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL 311
           L+TL L +N  ++ IP+     L  L  L L  N +      +   + +L  L L     
Sbjct: 114 LNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172

Query: 312 SGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GN 369
              I       L +L  L LA   L   IP+ L  L  L    L  N LS +I       
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLRE-IPN-LTPLIKLDELDLSGNHLS-AIRPGSFQG 229

Query: 370 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGD 428
           L  L  L + ++++     ++  NL +L  + L  N  L  +P ++   L  L  + L  
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHH 288

Query: 429 N 429
           N
Sbjct: 289 N 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  114 bits (287), Expect = 4e-27
 Identities = 72/278 (25%), Positives = 116/278 (41%), Gaps = 38/278 (13%)

Query: 133 LKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLK 192
              +          +P  I   +    L+L +NQ+     +    L  L  L L+ N ++
Sbjct: 45  FSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101

Query: 193 GSIPP-SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLT 251
            +I   +   L NL  L L +N L+ +IP+                            L+
Sbjct: 102 -TIEIGAFNGLANLNTLELFDNRLT-TIPNGA-----------------------FVYLS 136

Query: 252 NLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPL-SLGNLTNLDTLYLYTN 309
            L  L+LRNN    SIPS     + SL  L+LGE +    I   +   L+NL  L L   
Sbjct: 137 KLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195

Query: 310 SLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSE-IG 368
           +L   IP+ +  L  L  L+L+ N LS+  P     L +L   ++ ++ +   I      
Sbjct: 196 NLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFD 252

Query: 369 NLKSLSNLDLSENKLSGSIPHS-LGNLTNLAILYLHSN 405
           NL+SL  ++L+ N L+  +PH     L +L  ++LH N
Sbjct: 253 NLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  112 bits (283), Expect = 1e-26
 Identities = 70/257 (27%), Positives = 106/257 (41%), Gaps = 12/257 (4%)

Query: 107 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQ 166
           ++   +     +    +P  I   +  + L L  NQ          HL ++E L L +N 
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 167 LSGPIPHEVGGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEI-G 224
           +         GL++LN L L  N L  +IP  +   L+ L  L+L NN +  SIPS    
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFN 157

Query: 225 NLKSLSSLALGNNKLCGSIPL-FLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELG 283
            + SL  L LG  K    I       L+NL  L L   +    IP+ +  L  L  L+L 
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPN-LTPLIKLDELDLS 215

Query: 284 ENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSE-IGNLKSLSGLELADNELSSSIPHY 342
            N L+   P S   L +L  L++  + +   I      NL+SL  + LA N L+      
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDL 274

Query: 343 LGNLTNLAAFYLYKNSL 359
              L +L   +L+ N  
Sbjct: 275 FTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  109 bits (273), Expect = 3e-25
 Identities = 61/277 (22%), Positives = 103/277 (37%), Gaps = 35/277 (12%)

Query: 372 SLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKL 431
             S +      L   +P  +   TN  +L LH N +         +L+ L  LQL  N +
Sbjct: 44  QFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 432 SNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNL 489
                 +   L ++  L L+DN L+ +       L KL  L L +N ++ SIP+     +
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRI 159

Query: 490 TNLIRLRLNR-NHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVN 548
            +L RL L     L+     +F     L +++L+  N                       
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL---------------------- 197

Query: 549 NIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSELG 607
                  P +    +L  +DLS NH +  I       L  L KL + ++Q+     +   
Sbjct: 198 ----REIPNLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD 252

Query: 608 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN 644
           +L  L  ++L+ N L+         L  L  ++L  N
Sbjct: 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.7 bits (233), Expect = 3e-20
 Identities = 53/198 (26%), Positives = 75/198 (37%), Gaps = 11/198 (5%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQI 151
           N I  I       ++ L  L+L  N  + TIP      LS LK L+L  N     IP   
Sbjct: 98  NHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

Query: 152 -GHLSYIEALHLFK-NQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSLGNLTNLAIL 208
              +  +  L L +  +LS  I      GLS+L  L L    L     P+L  L  L  L
Sbjct: 156 FNRIPSLRRLDLGELKRLSY-ISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDEL 212

Query: 209 YLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSI 267
            L  N LS +I       L  L  L +  +++         NL +L  + L +N+ +   
Sbjct: 213 DLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271

Query: 268 PSEIGNLKSLSILELGEN 285
                 L  L  + L  N
Sbjct: 272 HDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 9/175 (5%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQI 151
           N++  I       +SKLK L L +N    +IP      +  L+ L L   +    I    
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180

Query: 152 -GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILY 209
              LS +  L+L    L   IP+ +  L  L+EL L+ N L  +I P S   L +L  L+
Sbjct: 181 FEGLSNLRYLNLAMCNLRE-IPN-LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLW 237

Query: 210 LHNNSLSGSIPSE-IGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF 263
           +  + +   I      NL+SL  + L +N L          L +L+ ++L +N +
Sbjct: 238 MIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 11/155 (7%)

Query: 63  NNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGT 122
           N    I   A+     N +  +  ++L  + ++  I       +S L+YL+L+  +    
Sbjct: 146 NPIESIPSYAF-----NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--R 198

Query: 123 IPPQIGNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEVGGLSSL 181
             P +  L  L  L LS N  S  I P     L +++ L + ++Q+     +    L SL
Sbjct: 199 EIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257

Query: 182 NELALTSNFLKGSIPPS-LGNLTNLAILYLHNNSL 215
            E+ L  N L   +P      L +L  ++LH+N  
Sbjct: 258 VEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  116 bits (293), Expect = 7e-28
 Identities = 61/256 (23%), Positives = 97/256 (37%), Gaps = 14/256 (5%)

Query: 179 SSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNK 238
           +  +++  T   L   +P  +   +N   L L  N++         +L  L  L LG N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 239 LCGSIPLF-LGNLTNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSLG 296
           +   I +     L +L+TL L +N  +  IPS     L  L  L L  N +      +  
Sbjct: 111 I-RQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFN 168

Query: 297 NLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLY 355
            + +L  L L        I       L +L  L L    +   +P+ L  L  L    + 
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMS 226

Query: 356 KNSLSGSIPSE-IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPRE 414
            N     I       L SL  L +  +++S    ++   L +L  L L  N  L S+P +
Sbjct: 227 GNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHD 284

Query: 415 I-GNLKSLFELQLGDN 429
           +   L+ L EL L  N
Sbjct: 285 LFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  115 bits (290), Expect = 2e-27
 Identities = 73/278 (26%), Positives = 108/278 (38%), Gaps = 38/278 (13%)

Query: 133 LKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLK 192
              +  +    S  +P  I   S    L+L +N +          L  L  L L  N ++
Sbjct: 56  FSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 193 GSIPP-SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLT 251
             I   +   L +L  L L +N L+  IPS                            L+
Sbjct: 113 -QIEVGAFNGLASLNTLELFDNWLT-VIPSGA-----------------------FEYLS 147

Query: 252 NLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPL-SLGNLTNLDTLYLYTN 309
            L  L+LRNN    SIPS     + SL  L+LGE +    I   +   L NL  L L   
Sbjct: 148 KLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 310 SLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSE-IG 368
           ++   +P+ +  L  L  LE++ N      P     L++L   ++  + +S  I      
Sbjct: 207 NIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFD 263

Query: 369 NLKSLSNLDLSENKLSGSIPHS-LGNLTNLAILYLHSN 405
            L SL  L+L+ N LS S+PH     L  L  L+LH N
Sbjct: 264 GLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  115 bits (290), Expect = 2e-27
 Identities = 73/257 (28%), Positives = 104/257 (40%), Gaps = 12/257 (4%)

Query: 107 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQ 166
           ++   +  +    S  +P  I   S  ++L L  N           HL ++E L L +N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 167 LSGPIPHEVGGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEI-G 224
           +         GL+SLN L L  N+L   IP  +   L+ L  L+L NN +  SIPS    
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFN 168

Query: 225 NLKSLSSLALGNNKLCGSIPLF-LGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELG 283
            + SL  L LG  K    I       L NL  L L   +    +P+ +  L  L  LE+ 
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMS 226

Query: 284 ENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSE-IGNLKSLSGLELADNELSSSIPHY 342
            N      P S   L++L  L++  + +S  I       L SL  L LA N LSS     
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDL 285

Query: 343 LGNLTNLAAFYLYKNSL 359
              L  L   +L+ N  
Sbjct: 286 FTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  110 bits (278), Expect = 7e-26
 Identities = 64/279 (22%), Positives = 102/279 (36%), Gaps = 35/279 (12%)

Query: 372 SLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKL 431
             S +  +   LS  +P  +   +N   L L  N +         +L  L  LQLG N +
Sbjct: 55  QFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 432 SNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNL 489
                 +   L  +  L L+DN L+ +       L KL  L L +N ++ SIP+     +
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRV 170

Query: 490 TNLIRLRLNR-NHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVN 548
            +L+RL L     L      +F     L +++L   N                       
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI---------------------- 208

Query: 549 NIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSE-IGKLSSLIKLILRRNQLFGQLPSELG 607
                  P +     L  +++S NH   +I       LSSL KL +  +Q+     +   
Sbjct: 209 ----KDMPNLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD 263

Query: 608 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQF 646
            L  L  L+L+ N LS+        L  L  L+L  N +
Sbjct: 264 GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.3 bits (201), Expect = 3e-16
 Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 11/176 (6%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQI 151
           N +  I       +SKL+ L L +N    +IP      +  L  L L   +    I    
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 152 -GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILY 209
              L  ++ L+L    +   +P+ +  L  L EL ++ N     I P S   L++L  L+
Sbjct: 192 FEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLW 248

Query: 210 LHNNSLSGSIPSE-IGNLKSLSSLALGNNKLCGSIPL-FLGNLTNLDTLYLRNNSF 263
           + N+ +S  I       L SL  L L +N L  S+P      L  L  L+L +N +
Sbjct: 249 VMNSQVS-LIERNAFDGLASLVELNLAHNNL-SSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 13/156 (8%)

Query: 63  NNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGT 122
           N    I   A+  +       +  ++L  + ++  I       +  LKYL+L   +    
Sbjct: 157 NPIESIPSYAFNRVP-----SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI--K 209

Query: 123 IPPQIGNLSMLKFLYLSANQFSGRIPPQ-IGHLSYIEALHLFKNQLSGPIPHEV-GGLSS 180
             P +  L  L+ L +S N F   I P     LS ++ L +  +Q+S  I      GL+S
Sbjct: 210 DMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLAS 267

Query: 181 LNELALTSNFLKGSIPPS-LGNLTNLAILYLHNNSL 215
           L EL L  N L  S+P      L  L  L+LH+N  
Sbjct: 268 LVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  112 bits (283), Expect = 1e-27
 Identities = 61/208 (29%), Positives = 90/208 (43%), Gaps = 13/208 (6%)

Query: 177 GLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN 236
            ++S  E+      L  ++PP L    +  IL+L  N L     + +     L+ L L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 237 NKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSL- 295
            +L   + +  G L  L TL L +N    S+P     L +L++L++  NRL  S+PL   
Sbjct: 65  AEL-TKLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGAL 120

Query: 296 GNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYL-GNLTNLAAFY 353
             L  L  LYL  N L  ++P  +      L  L LA+N L + +P  L   L NL    
Sbjct: 121 RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLL 178

Query: 354 LYKNSLSGSIPSEIGNLKSLSNLDLSEN 381
           L +NSL  +IP        L    L  N
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  103 bits (259), Expect = 1e-24
 Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 12/212 (5%)

Query: 297 NLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYK 356
            + +   +     +L+ ++P ++   K  + L L++N L +     L   T L    L +
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 357 NSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI- 415
             L+  +  + G L  L  LDLS N+L  S+P     L  L +L +  N  L S+P    
Sbjct: 65  AELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN-RLTSLPLGAL 120

Query: 416 GNLKSLFELQLGDNKLSNSISHSL-GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTL 474
             L  L EL L  N+L  ++   L      +  L+L +N L+ +    L  L  L  L L
Sbjct: 121 RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 475 SDNQLQGSIPN-LRNLTNLIRLRLNRNHLTCN 505
            +N L  +IP        L    L+ N   CN
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 91.3 bits (227), Expect = 2e-20
 Identities = 52/181 (28%), Positives = 69/181 (38%), Gaps = 12/181 (6%)

Query: 109 LKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLS 168
              L LS N         +   + L  L L   + +       G L  +  L L  NQL 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQ 90

Query: 169 GPIPHEVGGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSLSGSIPSEI-GNL 226
             +P     L +L  L ++ N L  S+P      L  L  LYL  N L  ++P  +    
Sbjct: 91  S-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPT 147

Query: 227 KSLSSLALGNNKLCGSIP--LFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGE 284
             L  L+L NN L   +P  L    L NLDTL L+ NS   +IP        L    L  
Sbjct: 148 PKLEKLSLANNNL-TELPAGLL-NGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHG 204

Query: 285 N 285
           N
Sbjct: 205 N 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 84.8 bits (210), Expect = 4e-18
 Identities = 51/231 (22%), Positives = 79/231 (34%), Gaps = 36/231 (15%)

Query: 465 NLVKLTMLTLSDNQLQGSIPNLRNL-TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSH 523
            +     +      L  ++P   +L  +   L L+ N L      +   + +LT ++L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALP--PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 524 NNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIG 583
                +++        L                       L  +DLS N  +  +P    
Sbjct: 65  A----ELTK-------LQVDG---------------TLPVLGTLDLSHNQ-LQSLPLLGQ 97

Query: 584 KLSSLIKLILRRNQLFGQLPSEL-GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLS 642
            L +L  L +  N+L   LP      L +L+ L L  N L    P  L    KL  L+L+
Sbjct: 98  TLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156

Query: 643 TNQFIQEIPIKL-EKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHN 692
            N  + E+P  L   L +L  L L  N L   IP        L    L  N
Sbjct: 157 NNN-LTELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 79.0 bits (195), Expect = 3e-16
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 9/173 (5%)

Query: 548 NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELG 607
              + +LPP++       ++ LS N +     + +   + L +L L R +L        G
Sbjct: 19  KRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDG 74

Query: 608 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLS 666
           +L  L  LDLS N+L  S+P     L  L  L++S N+ +  +P+     L  L EL L 
Sbjct: 75  TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLK 132

Query: 667 HNFLGKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
            N L K +P  +      LE L+L++NNL++        +  L  + +  N L
Sbjct: 133 GNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 77.5 bits (191), Expect = 1e-15
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 11/173 (6%)

Query: 548 NNIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL 606
            N++ +         ++L  ++L    +        G L  L  L L  NQL   LP   
Sbjct: 40  ENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQL-QSLPLLG 96

Query: 607 GSLIQLEYLDLSSNRLSNSIPRSL-GNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELD 664
            +L  L  LD+S NRL+ S+P      L +L  L L  N+ ++ +P  L      L +L 
Sbjct: 97  QTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLS 154

Query: 665 LSHNFLGKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYN 716
           L++N L  E+P+ +   + +L+ L L  N+L   IP+ F   + L +  +  N
Sbjct: 155 LANNNL-TELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.0 bits (156), Expect = 4e-11
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 7/143 (4%)

Query: 578 IPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLH 637
           +P ++        L L  N L+    + L    +L  L+L    L+  +    G L  L 
Sbjct: 25  LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLG 80

Query: 638 YLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQI-CNMRSLEMLNLSHNNLSD 696
            L+LS NQ +Q +P+  + L  L+ LD+S N L   +P      +  L+ L L  N L  
Sbjct: 81  TLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKT 138

Query: 697 FIPRCFEEMNGLLYIDISYNELH 719
             P        L  + ++ N L 
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLT 161

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  112 bits (282), Expect = 2e-27
 Identities = 60/281 (21%), Positives = 118/281 (41%), Gaps = 20/281 (7%)

Query: 199 LGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYL 258
              L N   +    ++++        +L  +++L+     +  +I   +  L NL  L L
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGV-TTIE-GVQYLNNLIGLEL 70

Query: 259 RNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSE 318
           ++N  +    + + NL  ++ LEL  N L     ++   L ++ TL L +  ++   P  
Sbjct: 71  KDNQITD--LAPLKNLTKITELELSGNPLKNVSAIA--GLQSIKTLDLTSTQITDVTP-- 124

Query: 319 IGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDL 378
           +  L +L  L L  N++++  P  L  LTNL    +    +S    + + NL  L+ L  
Sbjct: 125 LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKA 180

Query: 379 SENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHS 438
            +NK+S  I   L +L NL  ++L +N +    P  + N  +LF + L +  ++N     
Sbjct: 181 DDNKIS-DIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFY 236

Query: 439 LGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQL 479
             NL       +   + + + P  + +        L+ N  
Sbjct: 237 NNNLV--VPNVVKGPSGAPIAPATISDNGTYASPNLTWNLT 275

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  107 bits (269), Expect = 1e-25
 Identities = 60/273 (21%), Positives = 111/273 (40%), Gaps = 20/273 (7%)

Query: 154 LSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNN 213
           L+    +   K+ ++  +      L  +  L+     +  +I   +  L NL  L L +N
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDN 73

Query: 214 SLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGN 273
            ++    + + NL  ++ L L  N L       +  L ++ TL L +   +   P  +  
Sbjct: 74  QITD--LAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAG 127

Query: 274 LKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADN 333
           L +L +L L  N++    PL+   LTNL  L +    +S    + + NL  L+ L+  DN
Sbjct: 128 LSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDN 183

Query: 334 ELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGN 393
           ++S   P  L +L NL   +L  N +S    S + N  +L  + L+   ++        N
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNN 239

Query: 394 LTNLAILYLHSNTLLGSIPREIGNLKSLFELQL 426
           L    ++   S   +   P  I +  +     L
Sbjct: 240 LVVPNVVKGPSGAPI--APATISDNGTYASPNL 270

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  103 bits (260), Expect = 2e-24
 Identities = 66/285 (23%), Positives = 121/285 (42%), Gaps = 44/285 (15%)

Query: 247 LGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYL 306
              L N   +    ++ + ++                             +L  + TL  
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--------------------------QADLDGITTLSA 48

Query: 307 YTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSE 366
           +   ++ +I   +  L +L GLEL DN+++   P  L NLT +    L  N L     S 
Sbjct: 49  FGTGVT-TI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL--KNVSA 102

Query: 367 IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQL 426
           I  L+S+  LDL+  +++   P  L  L+NL +LYL  N  + +I   +  L +L  L +
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLN-QITNIS-PLAGLTNLQYLSI 158

Query: 427 GDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNL 486
           G+ ++S+ ++  L NL+ +T L   DN +S +    L +L  L  + L +NQ+   +  L
Sbjct: 159 GNAQVSD-LT-PLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQIS-DVSPL 213

Query: 487 RNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS 531
            N +NL  + L    +T   ++    +  L   ++        I+
Sbjct: 214 ANTSNLFIVTLTNQTIT---NQPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 95.9 bits (239), Expect = 8e-22
 Identities = 61/296 (20%), Positives = 116/296 (39%), Gaps = 43/296 (14%)

Query: 432 SNSISH--SLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNL 489
             +I+       L +   +A   + ++  +     +L  +T L+     +  +I  ++ L
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGVQYL 62

Query: 490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 549
            NLI L L  N +T +++       K+T ++LS N                         
Sbjct: 63  NNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNP------------------------ 96

Query: 550 IIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSL 609
            + ++   I     +  +DL++  I    P  +  LS+L  L L  NQ+     S L  L
Sbjct: 97  -LKNVSA-IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQI--TNISPLAGL 150

Query: 610 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNF 669
             L+YL + + ++S+  P  L NL KL  L    N+ I +I   L  L +L E+ L +N 
Sbjct: 151 TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK-ISDIS-PLASLPNLIEVHLKNNQ 206

Query: 670 LGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 725
           +    P  + N  +L ++ L++  +++        +     +         P   S
Sbjct: 207 ISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 95.5 bits (238), Expect = 1e-21
 Identities = 63/328 (19%), Positives = 112/328 (34%), Gaps = 67/328 (20%)

Query: 343 LGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYL 402
              L N       K++++        +L  ++ L      ++ +I   +  L NL  L L
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLEL 70

Query: 403 HSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEE 462
             N  +  +   + NL  + EL+L  N L N +S ++  L  +  L L    ++ V P  
Sbjct: 71  KDN-QITDLA-PLKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDVTP-- 124

Query: 463 LGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLS 522
           L  L  L +L L  NQ+  +I  L  LTNL  L +    ++ +++       KLT +   
Sbjct: 125 LAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQVS-DLT-PLANLSKLTTLKAD 181

Query: 523 HNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI 582
            N                          I  + P +     L  + L  N I        
Sbjct: 182 DNK-------------------------ISDISP-LASLPNLIEVHLKNNQI-------- 207

Query: 583 GKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLS 642
              S +               S L +   L  + L++  ++N       NLV  + +   
Sbjct: 208 ---SDV---------------SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGP 249

Query: 643 TNQFIQEIPIKLEKLIHLSELDLSHNFL 670
           +   I   P  +      +  +L+ N  
Sbjct: 250 SGAPIA--PATISDNGTYASPNLTWNLT 275

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 92.1 bits (229), Expect = 2e-20
 Identities = 62/245 (25%), Positives = 108/245 (44%), Gaps = 21/245 (8%)

Query: 103 IGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHL 162
           +  ++ L  L+L  N  +  + P + NL+ +  L LS N     +   I  L  I+ L L
Sbjct: 59  VQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDL 114

Query: 163 FKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSE 222
              Q++   P  + GLS+L  L L  N +  +I P L  LTNL  L + N  +S    + 
Sbjct: 115 TSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDL--TP 168

Query: 223 IGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILEL 282
           + NL  L++L   +NK+   I   L +L NL  ++L+NN  S    S + N  +L I+ L
Sbjct: 169 LANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTL 224

Query: 283 GENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHY 342
               +         NL   + +   + +     P+ I +         A   L+ ++  +
Sbjct: 225 TNQTITNQPVFYNNNLVVPNVVKGPSGAP--IAPATISD-----NGTYASPNLTWNLTSF 277

Query: 343 LGNLT 347
           + N++
Sbjct: 278 INNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 39/198 (19%), Positives = 78/198 (39%), Gaps = 15/198 (7%)

Query: 521 LSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPS 580
           ++       I  D     N        +N+         D   +  +      +      
Sbjct: 3   ITQPTAINVIFPD-PALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGV--TTIE 57

Query: 581 EIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLN 640
            +  L++LI L L+ NQ+     + L +L ++  L+LS N L N     +  L  +  L+
Sbjct: 58  GVQYLNNLIGLELKDNQI--TDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLD 113

Query: 641 LSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPR 700
           L++ Q I ++   L  L +L  L L  N +   I   +  + +L+ L++ +  +SD  P 
Sbjct: 114 LTSTQ-ITDVT-PLAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVSDLTP- 168

Query: 701 CFEEMNGLLYIDISYNEL 718
               ++ L  +    N++
Sbjct: 169 -LANLSKLTTLKADDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 17/182 (9%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIG 152
            QI  + P  +  +S L+ L L  N  +   P  +  L+ L++L +   Q S  + P + 
Sbjct: 117 TQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LA 170

Query: 153 HLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN 212
           +LS +  L    N++S   P  +  L +L E+ L +N +   + P L N +NL I+ L N
Sbjct: 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTN 226

Query: 213 NSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIG 272
            +++        NL   + +   +          +   T  D     + + + ++ S I 
Sbjct: 227 QTITNQPVFYNNNLVVPNVVKGPSGAP-------IAPATISDNGTYASPNLTWNLTSFIN 279

Query: 273 NL 274
           N+
Sbjct: 280 NV 281

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  109 bits (272), Expect = 8e-25
 Identities = 63/271 (23%), Positives = 109/271 (40%), Gaps = 18/271 (6%)

Query: 177 GLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN 236
             +   +  L    +  ++      L ++  +  +N+ +  S+   I  L +++ L L  
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 74

Query: 237 NKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLG 296
           NKL   I   L NL NL  L+L  N         + +LK L  L L  N ++  I   L 
Sbjct: 75  NKL-TDIK-PLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-DIN-GLV 128

Query: 297 NLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYK 356
           +L  L++LYL  N ++    + +  L  L  L L DN++S  +P  L  LT L   YL K
Sbjct: 129 HLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184

Query: 357 NSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIG 416
           N +S  +   +  LK+L  L+L   +      +   NL     +     +L    P  I 
Sbjct: 185 NHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIIS 240

Query: 417 NLKSLFELQLGDNKLSNSISHSLGNLTHMTL 447
           +     +  +  +    +   S      +T+
Sbjct: 241 DDGDYEKPNVKWHLPEFTNEVSFIFYQPVTI 271

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  100 bits (249), Expect = 6e-22
 Identities = 55/302 (18%), Positives = 102/302 (33%), Gaps = 41/302 (13%)

Query: 421 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 480
           + E       +   I              L   +++  +      L  +  +  +++ ++
Sbjct: 1   MGETITVSTPIKQ-IF-PDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 481 GSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNL 540
            S+  ++ L N+ +L LN N LT +I         L ++ L  N                
Sbjct: 57  -SVQGIQYLPNVTKLFLNGNKLT-DIK-PLTNLKNLGWLFLDENK--------------- 98

Query: 541 GTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFG 600
                     I  L   + D  +L  + L  N I   I   +  L  L  L L  N++  
Sbjct: 99  ----------IKDLSS-LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITD 145

Query: 601 QLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL 660
              + L  L +L+ L L  N++S+ +P  L  L KL  L LS N  I ++   L  L +L
Sbjct: 146 --ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNL 199

Query: 661 SELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHG 720
             L+L       +  +   N+     +  +  +L        +       +     E   
Sbjct: 200 DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTN 259

Query: 721 PI 722
            +
Sbjct: 260 EV 261

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 99.0 bits (246), Expect = 1e-21
 Identities = 51/256 (19%), Positives = 95/256 (37%), Gaps = 21/256 (8%)

Query: 417 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 476
                 +  L    ++++++     L  +  +   ++ +  V  + +  L  +T L L+ 
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNG 74

Query: 477 NQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS--SDW 534
           N+L   I  L NL NL  L L+ N +  ++  S     KL  + L HN     IS  +  
Sbjct: 75  NKLT-DIKPLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHN----GISDINGL 127

Query: 535 GKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILR 594
              P L +  +  NN I  +   +   ++L  + L  N I       +  L+ L  L L 
Sbjct: 128 VHLPQLESLYLG-NNKITDITV-LSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLS 183

Query: 595 RNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL 654
           +N +       L  L  L+ L+L S    N       NLV  + +  +    +    I  
Sbjct: 184 KNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII-- 239

Query: 655 EKLIHLSELDLSHNFL 670
                  + ++  +  
Sbjct: 240 SDDGDYEKPNVKWHLP 255

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.1 bits (215), Expect = 8e-18
 Identities = 60/277 (21%), Positives = 96/277 (34%), Gaps = 40/277 (14%)

Query: 103 IGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHL 162
           I  +  +  L L+ N  +  I P + NL  L +L+L  N+           +  + +L  
Sbjct: 61  IQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENK-----------IKDLSSL-- 105

Query: 163 FKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSE 222
                          L  L  L+L  N +   I   L +L  L  LYL NN +  +  + 
Sbjct: 106 -------------KDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKI--TDITV 148

Query: 223 IGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILEL 282
           +  L  L +L+L +N++   I   L  LT L  LYL  N  S      +  LK+L +LEL
Sbjct: 149 LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 204

Query: 283 GENRLNGSIPLSLGNLTNLDTLYLYTNSLSG----SIPSEIGNLKSLSGLELADNELSSS 338
                         NL   +T+     SL      S   +         L    NE+S  
Sbjct: 205 FSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFI 264

Query: 339 IPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSN 375
               +      A F+         + +   ++     
Sbjct: 265 FYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVI 301

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.1 bits (119), Expect = 3e-06
 Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 10/145 (6%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIG 152
           N I  I    + ++ +L+ L L +N  +  I   +  L+ L  L L  NQ S  I P + 
Sbjct: 119 NGISDING--LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIVP-LA 172

Query: 153 HLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN 212
            L+ ++ L+L KN +S      + GL +L+ L L S            NL     +   +
Sbjct: 173 GLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

Query: 213 NSLSGSIPSEIGNLKSLSSLALGNN 237
            SL    P  I +        +  +
Sbjct: 231 GSL--VTPEIISDDGDYEKPNVKWH 253

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 97.3 bits (243), Expect = 3e-23
 Identities = 28/186 (15%), Positives = 70/186 (37%), Gaps = 10/186 (5%)

Query: 273 NLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELAD 332
             K+     LG++       ++   + +L  + L   +++  + + I    ++  L + +
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINN 75

Query: 333 NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLG 392
              ++  P  +  L+NL    +    ++      +  L SL+ LD+S +    SI   + 
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 393 NLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYD 452
            L  +  + L  N  +  I   +  L  L  L +  + + +     + +   +  L  + 
Sbjct: 134 TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFS 190

Query: 453 NALSGV 458
             + G 
Sbjct: 191 QTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 94.6 bits (236), Expect = 2e-22
 Identities = 28/164 (17%), Positives = 66/164 (40%), Gaps = 7/164 (4%)

Query: 198 SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLY 257
           +   + +L  + L N +++  + + I    ++  L + N       P+    L+NL+ L 
Sbjct: 39  TEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNYNPI--SGLSNLERLR 94

Query: 258 LRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPS 317
           +     +S     +  L SL++L++  +  + SI   +  L  ++++ L  N     I  
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M 153

Query: 318 EIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG 361
            +  L  L  L +  + +       + +   L   Y +  ++ G
Sbjct: 154 PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 93.1 bits (232), Expect = 9e-22
 Identities = 30/185 (16%), Positives = 62/185 (33%), Gaps = 10/185 (5%)

Query: 297 NLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYK 356
                    L  +S +         + SL+ + LA+  ++      +    N+    +  
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 357 NSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIG 416
              +    + I  L +L  L +    ++     +L  LT+L +L +  +    SI  +I 
Sbjct: 76  IHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 417 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 476
            L  +  + L  N     I   L  L  +  L +  + +       + +  KL  L    
Sbjct: 134 TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190

Query: 477 NQLQG 481
             + G
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 91.6 bits (228), Expect = 3e-21
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 9/181 (4%)

Query: 345 NLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHS 404
                    L ++S +         + SL+ + L+   ++      +    N+  L +++
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 405 NTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELG 464
                  P  I  L +L  L++    +++    +L  LT +TLL +  +A    I  ++ 
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 465 NLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHN 524
            L K+  + LS N     I  L+ L  L  L +  + +  +        PKL  +     
Sbjct: 134 TLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQ 191

Query: 525 N 525
            
Sbjct: 192 T 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 90.4 bits (225), Expect = 8e-21
 Identities = 25/185 (13%), Positives = 67/185 (36%), Gaps = 10/185 (5%)

Query: 129 NLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTS 188
                    L  +  +         ++ +  + L    ++      +    ++ +L + +
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 189 NFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLG 248
                  P  +  L+NL  L +    ++      +  L SL+ L + ++    SI   + 
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 249 NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYT 308
            L  ++++ L  N   + I   +  L  L  L +  + ++    +   +   L+ LY ++
Sbjct: 134 TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFS 190

Query: 309 NSLSG 313
            ++ G
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 82.7 bits (205), Expect = 3e-18
 Identities = 39/209 (18%), Positives = 74/209 (35%), Gaps = 34/209 (16%)

Query: 488 NLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSV 547
                +   L ++    NI+E+      LT+I L++ N                      
Sbjct: 21  TFKAYLNGLLGQSSTA-NITEAQM--NSLTYITLANIN---------------------- 55

Query: 548 NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELG 607
              +  L   I  +  +  + ++  H      + I  LS+L +L +    +       L 
Sbjct: 56  ---VTDLTG-IEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLS 109

Query: 608 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSH 667
            L  L  LD+S +   +SI   +  L K++ ++LS N  I +I   L+ L  L  L++  
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF 168

Query: 668 NFLGKEIPSQICNMRSLEMLNLSHNNLSD 696
           + +       I +   L  L      +  
Sbjct: 169 DGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 79.6 bits (197), Expect = 4e-17
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 7/157 (4%)

Query: 562 SQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNR 621
           + L  I L+  ++     + I    ++  L +          + +  L  LE L +    
Sbjct: 44  NSLTYITLANINV--TDLTGIEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKD 99

Query: 622 LSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNM 681
           +++    +L  L  L  L++S +     I  K+  L  ++ +DLS+N    +I   +  +
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTL 158

Query: 682 RSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
             L+ LN+  + + D+     E+   L  +      +
Sbjct: 159 PELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 24/150 (16%), Positives = 55/150 (36%), Gaps = 9/150 (6%)

Query: 567 IDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSI 626
             L A+     IP       + +  +L ++            +  L Y+ L++  +++  
Sbjct: 6   TGLKASQDNVNIPDS--TFKAYLNGLLGQSST---ANITEAQMNSLTYITLANINVTDLT 60

Query: 627 PRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEM 686
              +     +  L ++           +  L +L  L +    +  +    +  + SL +
Sbjct: 61  G--IEYAHNIKDLTINNIH-ATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116

Query: 687 LNLSHNNLSDFIPRCFEEMNGLLYIDISYN 716
           L++SH+   D I      +  +  ID+SYN
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSIDLSYN 146

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 98.9 bits (247), Expect = 5e-23
 Identities = 60/234 (25%), Positives = 96/234 (41%), Gaps = 34/234 (14%)

Query: 179 SSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGN 236
            S   L L+ N L+  +   S  +   L +L L    +  +I      +L  LS+L L  
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 237 NKLCGSIPL-FLGNLTNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLS 294
           N +  S+ L     L++L  L     +  +S+ +   G+LK+L  L +  N +  S  L 
Sbjct: 86  NPI-QSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQ-SFKLP 142

Query: 295 --LGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAF 352
               NLTNL+ L L +N +  SI     +L+ L  + L +  L                 
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQ-SIYC--TDLRVLHQMPLLNLSL----------------- 182

Query: 353 YLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPH-SLGNLTNLAILYLHSN 405
            L  N ++  I         L  L L  N+L  S+P      LT+L  ++LH+N
Sbjct: 183 DLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 98.5 bits (246), Expect = 6e-23
 Identities = 60/238 (25%), Positives = 90/238 (37%), Gaps = 14/238 (5%)

Query: 265 SSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI-GNLK 323
             IP  +    S   L+L  N L      S  +   L  L L    +  +I      +L 
Sbjct: 20  YKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLS 76

Query: 324 SLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENK 382
            LS L L  N + S        L++L      + +L+ S+ +   G+LK+L  L+++ N 
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNL 135

Query: 383 L-SGSIPHSLGNLTNLAILYLHSNTLLGSIPREI----GNLKSL-FELQLGDNKLSNSIS 436
           + S  +P    NLTNL  L L SN  + SI          +  L   L L  N ++  I 
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQ 193

Query: 437 HSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIR 494
                   +  LAL  N L  V       L  L  + L  N    S P +  L+  + 
Sbjct: 194 PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 251

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 98.5 bits (246), Expect = 8e-23
 Identities = 56/218 (25%), Positives = 90/218 (41%), Gaps = 17/218 (7%)

Query: 299 TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS 358
            +   L L  N L         +   L  L+L+  E+ +       +L++L+   L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 359 LSGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPRE-- 414
           +  S+       L SL  L   E  L+ S+ +   G+L  L  L +  N L+ S      
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN-LIQSFKLPEY 144

Query: 415 IGNLKSLFELQLGDNKLSNSISH----SLGNLTHMTL-LALYDNALSGVIPEELGNLVKL 469
             NL +L  L L  NK+  SI       L  +  + L L L  N ++  I       ++L
Sbjct: 145 FSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRL 202

Query: 470 TMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCN 505
             L L  NQL+ S+P+     LT+L ++ L+ N   C+
Sbjct: 203 KELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 239

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 95.0 bits (237), Expect = 1e-21
 Identities = 52/244 (21%), Positives = 87/244 (35%), Gaps = 35/244 (14%)

Query: 408 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLV 467
              IP  +    S   L L  N L +  S+S  +   + +L L    +  +      +L 
Sbjct: 19  FYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76

Query: 468 KLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNN 525
            L+ L L+ N +Q S+       L++L +L     +L    +   G    L  ++++HN 
Sbjct: 77  HLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN- 134

Query: 526 FYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GK 584
               I S          F         +L         L  +DLS+N I   I       
Sbjct: 135 ---LIQS----FKLPEYFS--------NLT-------NLEHLDLSSNKI-QSIYCTDLRV 171

Query: 585 LSSL----IKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLN 640
           L  +    + L L  N +   +       I+L+ L L +N+L +        L  L  + 
Sbjct: 172 LHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230

Query: 641 LSTN 644
           L TN
Sbjct: 231 LHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 90.0 bits (224), Expect = 6e-20
 Identities = 54/244 (22%), Positives = 89/244 (36%), Gaps = 39/244 (15%)

Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKS 420
            IP  +    S  NLDLS N L     +S  +   L +L L    +  +I      +L  
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSH 77

Query: 421 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 480
           L  L L  N + +    +   L+ +  L   +  L+ +    +G+L  L  L ++ N +Q
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 481 GSIPN---LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFI----DLSHNNFYGQISSD 533
            S        NLTNL  L L+ N +         +  ++  +    DLS N         
Sbjct: 138 -SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-------- 188

Query: 534 WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLI 592
                            +  + P      +L  + L  N  +  +P  I  +L+SL K+ 
Sbjct: 189 -----------------MNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIW 230

Query: 593 LRRN 596
           L  N
Sbjct: 231 LHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 87.7 bits (218), Expect = 4e-19
 Identities = 51/204 (25%), Positives = 76/204 (37%), Gaps = 14/204 (6%)

Query: 91  NVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPP 149
           + N +  +      +  +L+ LDLS      TI      +LS L  L L+ N     +  
Sbjct: 36  SFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLAL 93

Query: 150 QI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSL-GNLTNLA 206
                LS ++ L   +  L+  + +   G L +L EL +  N ++    P    NLTNL 
Sbjct: 94  GAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 207 ILYLHNNSLSGSIPSEI----GNLKSLS-SLALGNNKLCGSIPLFLGNLTNLDTLYLRNN 261
            L L +N +  SI          +  L+ SL L  N +   I         L  L L  N
Sbjct: 153 HLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELALDTN 210

Query: 262 SFSSSIPSEIGNLKSLSILELGEN 285
              S        L SL  + L  N
Sbjct: 211 QLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 83.9 bits (208), Expect = 7e-18
 Identities = 59/235 (25%), Positives = 89/235 (37%), Gaps = 36/235 (15%)

Query: 490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 549
            +   L L+ N L    S SF   P+L  +DLS                           
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------------------------ 63

Query: 550 IIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSELG 607
            I ++      S S L  + L+ N I   +       LSSL KL+     L       +G
Sbjct: 64  -IQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 608 SLIQLEYLDLSSNRLSN-SIPRSLGNLVKLHYLNLSTNQFIQEIPI----KLEKLIHLS- 661
            L  L+ L+++ N + +  +P    NL  L +L+LS+N+ IQ I       L ++  L+ 
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNL 180

Query: 662 ELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYN 716
            LDLS N +   I         L+ L L  N L       F+ +  L  I +  N
Sbjct: 181 SLDLSLNPM-NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 38/175 (21%), Positives = 71/175 (40%), Gaps = 13/175 (7%)

Query: 553 SLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSEL-GSLI 610
            +P  +  S++   +DLS N +   + S        L  L L R ++   +      SL 
Sbjct: 21  KIPDNLPFSTK--NLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLS 76

Query: 611 QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNF 669
            L  L L+ N + +    +   L  L  L       +  +       L  L EL+++HN 
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL 135

Query: 670 LGK-EIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGL----LYIDISYNELH 719
           +   ++P    N+ +LE L+LS N +          ++ +    L +D+S N ++
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 97.6 bits (243), Expect = 5e-22
 Identities = 49/263 (18%), Positives = 93/263 (35%), Gaps = 15/263 (5%)

Query: 252 NLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL 311
           +      + +  +  IPS++   ++   L     +L      +     +L+ + +  N +
Sbjct: 10  SNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 312 SGSIPSEI-GNLKSLSGLELAD-NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-G 368
              I +++  NL  L  + +   N L    P    NL NL    +    +   +P     
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKI 125

Query: 369 NLKSLSNLDLSENKLSGSIPH-SLGNLT-NLAILYLHSNTLLGSIPREIGNLKSLFELQL 426
           +      LD+ +N    +I   S   L+    IL+L+ N  +  I     N   L EL L
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNL 184

Query: 427 -GDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN 485
             +N L    +      +   +L +    +  +    L NL KL   +  + +    +P 
Sbjct: 185 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 241

Query: 486 LRNLTNLIRLRLNRN-HLTCNIS 507
           L  L  L+   L    H     +
Sbjct: 242 LEKLVALMEASLTYPSHCCAFAN 264

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 96.1 bits (239), Expect = 2e-21
 Identities = 54/271 (19%), Positives = 98/271 (36%), Gaps = 35/271 (12%)

Query: 404 SNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEE- 462
             + +  IP ++   ++  EL+    KL      +      +  + +  N +  VI  + 
Sbjct: 17  QESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74

Query: 463 LGNLVKLTMLTLSD-NQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFI 519
             NL KL  + +   N L   I     +NL NL  L ++   +            +   +
Sbjct: 75  FSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133

Query: 520 DLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIP 579
           D+  N     I           +F               G S +  ++ L+ N I  +I 
Sbjct: 134 DIQDNINIHTIER--------NSFV--------------GLSFESVILWLNKNGIQ-EIH 170

Query: 580 SEIGKLSSLIKLILRRNQLFGQLPSE-LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHY 638
           +     + L +L L  N    +LP++          LD+S  R+ +     L NL KL  
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230

Query: 639 LNLSTNQFIQEIPIKLEKLIHLSELDLSHNF 669
            +       +++P  LEKL+ L E  L++  
Sbjct: 231 RSTYNL---KKLPT-LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 91.8 bits (228), Expect = 5e-20
 Identities = 42/253 (16%), Positives = 73/253 (28%), Gaps = 15/253 (5%)

Query: 180 SLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL 239
           S        + +   IP  L    N   L      L             L  + +  N +
Sbjct: 10  SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 240 CGSIPLF-LGNLTNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIP-LSLG 296
              I      NL  L  + +   +    I  E   NL +L  L +    +   +P +   
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKI 125

Query: 297 NLTNLDTLYLYTNSLSGSIPSEI--GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYL 354
           +      L +  N    +I      G       L L  N +                   
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185

Query: 355 YKNSLSGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPR 413
             N+L   +P+++         LD+S  ++     + L NL  L     ++   L +   
Sbjct: 186 DNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT--- 241

Query: 414 EIGNLKSLFELQL 426
            +  L +L E  L
Sbjct: 242 -LEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 76.0 bits (187), Expect = 8e-15
 Identities = 42/226 (18%), Positives = 72/226 (31%), Gaps = 16/226 (7%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLS-ANQFSGRIPPQ 150
            ++  I          L+ +++S N     I   +  NL  L  + +  AN     I P+
Sbjct: 40  TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPE 98

Query: 151 I-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPP-SLGNLT-NLA 206
              +L  ++ L +    +   +P            L +  N    +I   S   L+    
Sbjct: 99  AFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV 157

Query: 207 ILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS 265
           IL+L+ N +   I +      +        NN L           +    L +       
Sbjct: 158 ILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-H 215

Query: 266 SIPSEI-GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNS 310
           S+PS    NLK L        +    +P +L  L  L    L   S
Sbjct: 216 SLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 49/253 (19%), Positives = 87/253 (34%), Gaps = 32/253 (12%)

Query: 470 TMLTLSDNQLQGSIPNLRNL-TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG 528
            +    ++++   IP   +L  N I LR     L      +F     L  I++S N+   
Sbjct: 12  RVFLCQESKVT-EIP--SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 529 QISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GKLSS 587
            I +          F                +  +LH I +   + +  I  E    L +
Sbjct: 69  VIEA--------DVFS---------------NLPKLHEIRIEKANNLLYINPEAFQNLPN 105

Query: 588 LIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSL--GNLVKLHYLNLSTNQ 645
           L  L++    +           +Q   LD+  N   ++I R+   G   +   L L+ N 
Sbjct: 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165

Query: 646 FIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCFEE 704
            IQEI         L EL+LS N   +E+P+ +        +L++S   +        E 
Sbjct: 166 -IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224

Query: 705 MNGLLYIDISYNE 717
           +  L        +
Sbjct: 225 LKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.0 bits (174), Expect = 3e-13
 Identities = 41/183 (22%), Positives = 64/183 (34%), Gaps = 12/183 (6%)

Query: 85  NSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQF 143
           + I +   N +  I P    N+  L+YL +S+      +P     +      L +  N  
Sbjct: 82  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNIN 140

Query: 144 SGRIPPQI--GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPP-SLG 200
              I      G       L L KN +   I +     + L+EL L+ N     +P     
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 201 NLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLR 259
             +   IL +    +  S+PS    NLK L + +  N K    +P     L  L    L 
Sbjct: 200 GASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLPTL-EKLVALMEASLT 254

Query: 260 NNS 262
             S
Sbjct: 255 YPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.0 bits (174), Expect = 3e-13
 Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 7/178 (3%)

Query: 548 NNIIGSLPPEI-GDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKL-ILRRNQLFGQLPS 604
              +  +          L  I++S N ++  I +++   L  L ++ I + N L    P 
Sbjct: 39  LTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98

Query: 605 ELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK-LEKL-IHLSE 662
              +L  L+YL +S+  + +       + ++   L++  N  I  I       L      
Sbjct: 99  AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158

Query: 663 LDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPR-CFEEMNGLLYIDISYNELH 719
           L L+ N + +EI +   N   L+ LNLS NN  + +P   F   +G + +DIS   +H
Sbjct: 159 LWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 95.1 bits (237), Expect = 1e-21
 Identities = 64/270 (23%), Positives = 105/270 (38%), Gaps = 20/270 (7%)

Query: 208 LYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSI 267
                  +      +           L    +  ++      L ++D +   N+   S  
Sbjct: 7   TITVPTPIKQIFSDD--AFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV- 61

Query: 268 PSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSG 327
              I  L +++ L L  N+L    PL+  NL NL  L+L  N +   + S + +LK L  
Sbjct: 62  -QGIQYLPNVTKLFLNGNKLTDIKPLA--NLKNLGWLFLDENKVK-DL-SSLKDLKKLKS 116

Query: 328 LELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSI 387
           L L  N +S      L +L  L + YL  N ++    + +  L  L  L L +N++S  I
Sbjct: 117 LSLEHNGISDING--LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DI 171

Query: 388 PHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTL 447
              L  LT L  LYL  N +  S  R +  LK+L  L+L   +  N   +   NL     
Sbjct: 172 V-PLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228

Query: 448 LALYDNALSGVIPEELGNLVKLTMLTLSDN 477
           +   D +L  V PE + +        +  +
Sbjct: 229 VKNTDGSL--VTPEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 92.0 bits (229), Expect = 1e-20
 Identities = 62/258 (24%), Positives = 107/258 (41%), Gaps = 18/258 (6%)

Query: 177 GLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN 236
             +   +  L    +  ++      L ++  +  +N+ +  S+   I  L +++ L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 77

Query: 237 NKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLG 296
           NKL   I   L NL NL  L+L  N       S + +LK L  L L  N ++  I   L 
Sbjct: 78  NKL-TDIK-PLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGIS-DIN-GLV 131

Query: 297 NLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYK 356
           +L  L++LYL  N ++    + +  L  L  L L DN++S  +P  L  LT L   YL K
Sbjct: 132 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187

Query: 357 NSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIG 416
           N +S  +   +  LK+L  L+L   +      +   NL     +     +L+   P  I 
Sbjct: 188 NHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIIS 243

Query: 417 NLKSLFELQLGDNKLSNS 434
           +     +  +  +    +
Sbjct: 244 DDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 92.0 bits (229), Expect = 1e-20
 Identities = 60/235 (25%), Positives = 95/235 (40%), Gaps = 16/235 (6%)

Query: 199 LGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYL 258
                      L   S++ ++      L S+  +   N+ +  S+   +  L N+  L+L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFL 75

Query: 259 RNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSE 318
             N  +      + NLK+L  L L EN++     L   +L  L +L L  N +S  I   
Sbjct: 76  NGNKLTDI--KPLANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGIS-DING- 129

Query: 319 IGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDL 378
           + +L  L  L L +N+++      L  LT L    L  N +S  I   +  L  L NL L
Sbjct: 130 LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYL 185

Query: 379 SENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 433
           S+N +S  +  +L  L NL +L L S   L        NL     ++  D  L  
Sbjct: 186 SKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 90.5 bits (225), Expect = 5e-20
 Identities = 69/303 (22%), Positives = 115/303 (37%), Gaps = 44/303 (14%)

Query: 82  GRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSAN 141
           G + S  +T    I  I        ++    +L   S +  +      L+ +  +  + +
Sbjct: 1   GPLGSETITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS 56

Query: 142 QFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGN 201
                +   I +L  +  L L  N+L+                          I P L N
Sbjct: 57  DIK-SVQG-IQYLPNVTKLFLNGNKLT-------------------------DIKP-LAN 88

Query: 202 LTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNN 261
           L NL  L+L  N +   + S + +LK L SL+L +N +   I   L +L  L++LYL NN
Sbjct: 89  LKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNN 144

Query: 262 SFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGN 321
             +    + +  L  L  L L +N+++  I   L  LT L  LYL  N +S  +   +  
Sbjct: 145 KITD--ITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DL-RALAG 198

Query: 322 LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSEN 381
           LK+L  LEL   E  +   ++  NL           SL    P  I +       ++  +
Sbjct: 199 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWH 256

Query: 382 KLS 384
              
Sbjct: 257 LPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 83.6 bits (207), Expect = 1e-17
 Identities = 52/267 (19%), Positives = 96/267 (35%), Gaps = 41/267 (15%)

Query: 432 SNSISH--SLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNL 489
              I    S           L   +++  +      L  +  +  +++ ++ S+  ++ L
Sbjct: 11  PTPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGIQYL 67

Query: 490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 549
            N+ +L LN N LT +I         L ++ L  N                         
Sbjct: 68  PNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENK------------------------ 101

Query: 550 IIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSL 609
            +  L   + D  +L  + L  N I     + +  L  L  L L  N++     + L  L
Sbjct: 102 -VKDLSS-LKDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKITD--ITVLSRL 155

Query: 610 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNF 669
            +L+ L L  N++S+ +P  L  L KL  L LS N  I ++   L  L +L  L+L    
Sbjct: 156 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQE 211

Query: 670 LGKEIPSQICNMRSLEMLNLSHNNLSD 696
              +  +   N+     +  +  +L  
Sbjct: 212 CLNKPINHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 51/239 (21%), Positives = 91/239 (38%), Gaps = 19/239 (7%)

Query: 417 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 476
                 +  L    ++++++     L  +  +   ++ +  V  + +  L  +T L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNG 77

Query: 477 NQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS--SDW 534
           N+L   I  L NL NL  L L+ N +  ++  S     KL  + L HN     IS  +  
Sbjct: 78  NKLT-DIKPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHN----GISDINGL 130

Query: 535 GKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILR 594
              P L +  +  NN I  +   +   ++L  + L  N I       +  L+ L  L L 
Sbjct: 131 VHLPQLESLYLG-NNKITDITV-LSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLS 186

Query: 595 RNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK 653
           +N +       L  L  L+ L+L S    N       NLV  + +  +    +    I 
Sbjct: 187 KNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 20/245 (8%)

Query: 483 IPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISS--DWGKCPNL 540
           I +       I+  L +  +T     +      +  I  +++     I S       PN+
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNS----DIKSVQGIQYLPNV 70

Query: 541 GTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFG 600
               ++  N +  + P + +   L  + L  N +  K  S +  L  L  L L  N +  
Sbjct: 71  TKLFLN-GNKLTDIKP-LANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGI-- 124

Query: 601 QLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL 660
              + L  L QLE L L +N++++     L  L KL  L+L  NQ I +I   L  L  L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKL 180

Query: 661 SELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHG 720
             L LS N +  ++   +  +++L++L L      +        +     +  +   L  
Sbjct: 181 QNLYLSKNHI-SDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

Query: 721 PIPNS 725
           P   S
Sbjct: 239 PEIIS 243

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 93.5 bits (233), Expect = 3e-21
 Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 12/185 (6%)

Query: 203 TNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP--LFLGNLTNLDTLYLRN 260
            +   L L +N LS         L  L  L L +NKL  ++P  +F   L NL+TL++ +
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKE-LKNLETLWVTD 94

Query: 261 NSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTNSLSGSIPSE 318
           N    ++P  +   L +L+ L L  N+L  S+P  +  +LT L  L L  N L  S+P  
Sbjct: 95  NKL-QALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKG 151

Query: 319 I-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNL 376
           +   L SL  L L +N+L          LT L    L  N L   +P     +L+ L  L
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKML 210

Query: 377 DLSEN 381
            L EN
Sbjct: 211 QLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 93.5 bits (233), Expect = 3e-21
 Identities = 69/211 (32%), Positives = 101/211 (47%), Gaps = 14/211 (6%)

Query: 300 NLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSL 359
           N +++   +  L+ +IPS I        L+L  N+LSS        LT L   YL  N L
Sbjct: 17  NKNSVDCSSKKLT-AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL 73

Query: 360 SGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREI-G 416
             ++P+ I   LK+L  L +++NKL  ++P  +   L NLA L L  N L  S+P  +  
Sbjct: 74  Q-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFD 130

Query: 417 NLKSLFELQLGDNKLSNSISHSL-GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLS 475
           +L  L  L LG N+L  S+   +   LT +  L LY+N L  V       L +L  L L 
Sbjct: 131 SLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189

Query: 476 DNQLQGSIPN--LRNLTNLIRLRLNRNHLTC 504
           +NQL+  +P     +L  L  L+L  N   C
Sbjct: 190 NNQLK-RVPEGAFDSLEKLKMLQLQENPWDC 219

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 92.3 bits (230), Expect = 8e-21
 Identities = 58/183 (31%), Positives = 86/183 (46%), Gaps = 14/183 (7%)

Query: 158 EALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSLS 216
           + L L  N+LS         L+ L  L L  N L+ ++P  +   L NL  L++ +N L 
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98

Query: 217 GSIPSEI-GNLKSLSSLALGNNKLCGSIP--LFLGNLTNLDTLYLRNNSFSSSIPSEI-G 272
            ++P  +   L +L+ L L  N+L  S+P  +F  +LT L  L L  N   S +P  +  
Sbjct: 99  -ALPIGVFDQLVNLAELRLDRNQL-KSLPPRVF-DSLTKLTYLSLGYNELQS-LPKGVFD 154

Query: 273 NLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLEL 330
            L SL  L L  N+L   +P      LT L TL L  N L   +P     +L+ L  L+L
Sbjct: 155 KLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQL 212

Query: 331 ADN 333
            +N
Sbjct: 213 QEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 92.0 bits (229), Expect = 9e-21
 Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 9/183 (4%)

Query: 347 TNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSN 405
            +     L  N LS         L  L  L L++NKL  ++P  +   L NL  L++  N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 406 TLLGSIPREI-GNLKSLFELQLGDNKLSNSISHSL-GNLTHMTLLALYDNALSGVIPEEL 463
             L ++P  +   L +L EL+L  N+L  S+   +  +LT +T L+L  N L  +     
Sbjct: 96  -KLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153

Query: 464 GNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDL 521
             L  L  L L +NQL+  +P      LT L  L+L+ N L      +F    KL  + L
Sbjct: 154 DKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

Query: 522 SHN 524
             N
Sbjct: 213 QEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 9/168 (5%)

Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKS 420
           +IPS I        LDL  NKLS     +   LT L +LYL+ N  L ++P  I   LK+
Sbjct: 30  AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKN 86

Query: 421 LFELQLGDNKLSNSISHSL-GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQL 479
           L  L + DNKL  ++   +   L ++  L L  N L  + P    +L KLT L+L  N+L
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145

Query: 480 QGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNN 525
           Q S+P      LT+L  LRL  N L      +F    +L  + L +N 
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 80.8 bits (200), Expect = 7e-17
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 10/176 (5%)

Query: 91  NVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPP 149
             N++  +       ++KL+ L L+ N    T+P  I   L  L+ L+++ N+    +P 
Sbjct: 45  QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPI 102

Query: 150 QI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSL-GNLTNLA 206
            +   L  +  L L +NQL   +P  V   L+ L  L+L  N L+ S+P  +   LT+L 
Sbjct: 103 GVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLK 160

Query: 207 ILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNN 261
            L L+NN L   +P      L  L +L L NN+L         +L  L  L L+ N
Sbjct: 161 ELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 11/175 (6%)

Query: 548 NNIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSE 605
           +N + SLP +     ++L ++ L+ N +   +P+ I  +L +L  L +  N+L   LP  
Sbjct: 46  SNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKL-QALPIG 103

Query: 606 L-GSLIQLEYLDLSSNRLSNSIPRSL-GNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSE 662
           +   L+ L  L L  N+L  S+P  +  +L KL YL+L  N+ +Q +P  + +KL  L E
Sbjct: 104 VFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKE 161

Query: 663 LDLSHNFLGKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYN 716
           L L +N L K +P      +  L+ L L +N L       F+ +  L  + +  N
Sbjct: 162 LRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.9 bits (177), Expect = 6e-14
 Identities = 64/218 (29%), Positives = 91/218 (41%), Gaps = 35/218 (16%)

Query: 408 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLV 467
           L +IP  I       +L L  NKLS+  S +   LT + LL L DN L  +       L 
Sbjct: 28  LTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK 85

Query: 468 KLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISES-FGIHPKLTFIDLSHN 524
            L  L ++DN+LQ ++P      L NL  LRL+RN L  ++    F    KLT++ L +N
Sbjct: 86  NLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYN 143

Query: 525 NFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEI- 582
                                     + SLP  + D  + L  + L  N  + ++P    
Sbjct: 144 E-------------------------LQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAF 177

Query: 583 GKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSN 620
            KL+ L  L L  NQL         SL +L+ L L  N
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 55/230 (23%), Positives = 82/230 (35%), Gaps = 61/230 (26%)

Query: 446 TLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLT 503
             L L  N LS +  +    L KL +L L+DN+LQ ++P    + L NL  L +  N L 
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98

Query: 504 CNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-S 562
                                                            +LP  + D   
Sbjct: 99  -------------------------------------------------ALPIGVFDQLV 109

Query: 563 QLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSEL-GSLIQLEYLDLSSN 620
            L  + L  N +   +P  +   L+ L  L L  N+L   LP  +   L  L+ L L +N
Sbjct: 110 NLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNN 167

Query: 621 RLSNSIPRSL-GNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHN 668
           +L   +P      L +L  L L  NQ ++ +P    + L  L  L L  N
Sbjct: 168 QLK-RVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 10/170 (5%)

Query: 553 SLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL-GSLIQ 611
           ++P  I   ++   +DL +N +         +L+ L  L L  N+L   LP+ +   L  
Sbjct: 30  AIPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKN 86

Query: 612 LEYLDLSSNRLSNSIPRSL-GNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNF 669
           LE L ++ N+L  ++P  +   LV L  L L  NQ ++ +P ++ + L  L+ L L +N 
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNE 144

Query: 670 LGKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
           L + +P  +   + SL+ L L +N L       F+++  L  + +  N+L
Sbjct: 145 L-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 10/176 (5%)

Query: 548 NNIIGSLPPEIGD-SSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL 606
           N  +      +   ++  + +D S+  +   IPS I   +   KL L+ N+L        
Sbjct: 1   NEALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAF 57

Query: 607 GSLIQLEYLDLSSNRLSNSIPRSL-GNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELD 664
             L +L  L L+ N+L  ++P  +   L  L  L ++ N+ +Q +PI + ++L++L+EL 
Sbjct: 58  HRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELR 115

Query: 665 LSHNFLGKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719
           L  N L K +P ++  ++  L  L+L +N L       F+++  L  + +  N+L 
Sbjct: 116 LDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 91.5 bits (227), Expect = 4e-20
 Identities = 58/275 (21%), Positives = 102/275 (37%), Gaps = 23/275 (8%)

Query: 440 GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP----NLRNLTNLIRL 495
           G  +   LL   D         ++   + L  LT+   ++   I      +  ++ L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 496 RLNRNHLTCNISESFGI--HPKLTFIDLSHNNFYGQISSDWG----KCPNLGTFDVSVNN 549
            L    +T            P L  ++L + ++  + +          P L    ++  +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 550 IIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI----GKLSSLIKLILRRNQ---LFGQL 602
            +     ++     L  +DLS N  +G+          K  +L  L LR        G  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 603 PSELGSLIQLEYLDLSSNRLSNSIPRSL-GNLVKLHYLNLSTNQFIQEIPIKLEKLIHLS 661
            +   + +QL+ LDLS N L ++          +L+ LNLS    ++++P  L     LS
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPA--KLS 277

Query: 662 ELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD 696
            LDLS+N L    PS    +  +  L+L  N   D
Sbjct: 278 VLDLSYNRL-DRNPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.1 bits (200), Expect = 1e-16
 Identities = 51/275 (18%), Positives = 86/275 (31%), Gaps = 22/275 (8%)

Query: 200 GNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP---LFLGNLTNLDTL 256
           G  +   +L   +        ++I    SL  L +   ++   I    L +  ++ L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 257 YLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP------LSLGNLTNLDTLYLYTNS 310
            L N   + + P  +       +  L    ++ +        L       L  L +    
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 311 LSGSIPSEIGNLKSLSGLELADNELSSSI-------PHYLGNLTNLAAFYLYKNSLSGSI 363
                  ++    +LS L+L+DN             P     L  LA       + SG  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 364 PSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREIGNLKSLF 422
            +       L  LDLS N L  +         + L  L L     L  +P+ +     L 
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGL--PAKLS 277

Query: 423 ELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSG 457
            L L  N+L    + S   L  +  L+L  N    
Sbjct: 278 VLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 80.7 bits (199), Expect = 1e-16
 Identities = 47/246 (19%), Positives = 81/246 (32%), Gaps = 19/246 (7%)

Query: 83  RVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQ 142
           +  ++    +         ++  IS L+ L L +   +GT PP +   +      L+   
Sbjct: 71  KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN 130

Query: 143 FSGRIPP------QIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSI- 195
            S           Q      ++ L + +         +V    +L+ L L+ N   G   
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 196 ------PPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP-LFLG 248
                 P     L  LA+      + SG   +       L  L L +N L  +       
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 249 NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYT 308
             + L++L L        +P  +     LS+L+L  NRL+   P     L  +  L L  
Sbjct: 251 WPSQLNSLNLSFTGL-KQVPKGL--PAKLSVLDLSYNRLD-RNPSPDE-LPQVGNLSLKG 305

Query: 309 NSLSGS 314
           N    S
Sbjct: 306 NPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 77.6 bits (191), Expect = 1e-15
 Identities = 52/314 (16%), Positives = 95/314 (30%), Gaps = 48/314 (15%)

Query: 331 ADNELSSSIPHYLGNLTNLAAFYLYKN-SLSGSIPSEIGNLKSLSNLDLSENKLSGSIPH 389
           A N L ++     G   +L       +        ++I    SL  L +   ++   I  
Sbjct: 27  AFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILF 86

Query: 390 S---LGNLTNLAILYLHSNTLLGSIPREIGNL--KSLFELQLGDNKLSNSISHSLG---- 440
               +  ++ L  L L +  + G+ P  +       L  L L +   +   +        
Sbjct: 87  GALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW 146

Query: 441 NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN-----LRNLTNLIRL 495
               + +L++          E++     L+ L LSDN   G               L  L
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 496 RLNRNHLTC---NISESFGIHPKLTFIDLSHNNFYGQI-SSDWGKCPNLGTFDVSVNNII 551
            L    +       S       +L  +DLSHN+      +        L + ++S    +
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS-FTGL 265

Query: 552 GSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQ 611
             +P  +   ++L V+DLS N +                                  L Q
Sbjct: 266 KQVPKGL--PAKLSVLDLSYNRL--------------------------DRNPSPDELPQ 297

Query: 612 LEYLDLSSNRLSNS 625
           +  L L  N   +S
Sbjct: 298 VGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.9 bits (189), Expect = 2e-15
 Identities = 58/297 (19%), Positives = 84/297 (28%), Gaps = 40/297 (13%)

Query: 104 GNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHL---SYIEAL 160
           G  S    L              I     LK L + A +   RI      +   S ++ L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 161 HLFKNQLSGPIPHEVGGL--SSLNELALTSNFLKG--SIPPSLGNL--TNLAILYLHNNS 214
            L   +++G  P  +       LN L L +       +    L       L +L +    
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 215 LSGSIPSEIGNLKSLSSLALGNNKLCGSIPL----FLGNLTNLDTLYLRNNSFSSSIPSE 270
                  ++    +LS+L L +N   G   L           L  L LRN    +     
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET----- 215

Query: 271 IGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLE 329
                            +G           L  L L  NSL  +  +        L+ L 
Sbjct: 216 ----------------PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 330 LADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGS 386
           L+   L          L+ L    L  N L    PS    L  + NL L  N    S
Sbjct: 260 LSFTGLKQVPKGLPAKLSVL---DLSYNRLD-RNPS-PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.0 bits (179), Expect = 5e-14
 Identities = 50/266 (18%), Positives = 83/266 (31%), Gaps = 25/266 (9%)

Query: 472 LTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS 531
           L  +D +L G   +L  L   +    +    T  I         L  + +       +I 
Sbjct: 31  LGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSL-----SLKRLTVRAARIPSRIL 85

Query: 532 SDWGK---CPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHI-IGKIPSEIGKLS- 586
               +      L    +    + G+ PP + +++   +  L+  ++      + + +L  
Sbjct: 86  FGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQ 145

Query: 587 ----SLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSI-------PRSLGNLVK 635
                L  L + +         ++     L  LDLS N             P     L  
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205

Query: 636 LHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSHNNL 694
           L   N                 + L  LDLSHN L     +  C     L  LNLS   L
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

Query: 695 SDFIPRCFEEMNGLLYIDISYNELHG 720
              +P+       L  +D+SYN L  
Sbjct: 266 KQ-VPKGLPA--KLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.1 bits (148), Expect = 4e-10
 Identities = 33/217 (15%), Positives = 61/217 (28%), Gaps = 23/217 (10%)

Query: 516 LTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHII 575
           L  +D   +               L      + + I      +   S L  + L    + 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 576 GKIPSEIGKLS--SLIKLILRRNQL--FGQLPSELGSLIQ--LEYLDLSSNRLSNSIPRS 629
           G  P  + + +   L  L LR           +EL   ++  L+ L ++     N     
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 630 LGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL 689
           +     L  L+LS N  + E  +                      P +   ++ L + N 
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISAL-----------------CPLKFPTLQVLALRNA 211

Query: 690 SHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNST 726
                S            L  +D+S+N L       +
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 10/165 (6%)

Query: 583 GKLSSLIKLILRRNQLFGQLP-SELGSLIQLEYLDLSSNRLSNSIPRS---LGNLVKLHY 638
           G   SL  L+ R +        +++   + L+ L + + R+ + I      +  +  L  
Sbjct: 40  GGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE 99

Query: 639 LNLSTNQFIQEIPIKLEKLIH--LSELDLSHNFLGKEIPS----QICNMRSLEMLNLSHN 692
           L L   +     P  L +     L+ L+L +             Q      L++L+++  
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 693 NLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQ 737
           +  +F          L  +D+S N   G     +A        LQ
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 93.1 bits (232), Expect = 4e-20
 Identities = 87/439 (19%), Positives = 144/439 (32%), Gaps = 65/439 (14%)

Query: 323 KSLSGLELADNELS-SSIPHYLGNLTNLAAFYLYKNSLS----GSIPSEIGNLKSLSNLD 377
             +  L++   ELS +     L  L       L    L+      I S +    +L+ L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 378 LSENKLSGSIPHSLGNL-----TNLAILYLHSNTL----LGSIPREIGNLKSLFELQLGD 428
           L  N+L     H +          +  L L +  L     G +   +  L +L EL L D
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 429 NKLSNSISHSLG-----NLTHMTLLALYDNALSGVIPEELGNLVK----LTMLTLSDNQL 479
           N L ++    L          +  L L   +LS    E L ++++       LT+S+N +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 480 QGS-IPNL-----RNLTNLIRLRLNRNHLT----CNISESFGIHPKLTFIDLSHNNFYG- 528
             + +  L      +   L  L+L    +T     ++         L  + L  N     
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 529 --QISSDWGKCPN--LGTFDVSVNNI----IGSLPPEIGDSSQLHVIDLSANHIIGKIPS 580
                      P+  L T  +    I     G L   +     L  + L+ N +  +   
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 581 EIGKL-----SSLIKLILRRNQLFGQLPSELGSLIQ----LEYLDLSSNRLSNSIPRSLG 631
            + +        L  L ++         S   S++     L  L +S+NRL ++  R L 
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362

Query: 632 -----NLVKLHYLNLSTNQF----IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC--- 679
                    L  L L+           +   L     L ELDLS+N LG     Q+    
Sbjct: 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 422

Query: 680 --NMRSLEMLNLSHNNLSD 696
                 LE L L     S+
Sbjct: 423 RQPGCLLEQLVLYDIYWSE 441

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 79.6 bits (197), Expect = 1e-15
 Identities = 66/356 (18%), Positives = 106/356 (29%), Gaps = 61/356 (17%)

Query: 419 KSLFELQLGDNKLSNS-ISHSLGNLTHMTLLALYDNALS----GVIPEELGNLVKLTMLT 473
             +  L +   +LS++  +  L  L    ++ L D  L+      I   L     L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 474 LSDNQLQGS-----IPNLRNL-TNLIRLRLNRNHLT----CNISESFGIHPKLTFIDLSH 523
           L  N+L        +  L+     + +L L    LT      +S +    P L  + LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 524 NNFYGQISSDWG----------KCPNLGTFDVSVNNI----IGSLPPEIGDSSQLHVIDL 569
           N        D G              L    +   ++       L   +        + +
Sbjct: 123 NLL-----GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 570 SANHIIGKIPSEIGKL-----SSLIKLILRRNQL----FGQLPSELGSLIQLEYLDLSSN 620
           S N I       + +        L  L L    +       L   + S   L  L L SN
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

Query: 621 RLSNSIPRSLGNLVK-----LHYLNLSTNQF----IQEIPIKLEKLIHLSELDLSHNFLG 671
           +L +     L   +      L  L +           ++   L     L EL L+ N LG
Sbjct: 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

Query: 672 KEIPSQICNM-----RSLEMLNLSHNNLSD----FIPRCFEEMNGLLYIDISYNEL 718
            E    +C         LE L +   + +            +   LL + IS N L
Sbjct: 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.9 bits (195), Expect = 2e-15
 Identities = 79/425 (18%), Positives = 146/425 (34%), Gaps = 74/425 (17%)

Query: 157 IEALHLFKNQLSGP-IPHEVGGLSSLNELALTSNFLK----GSIPPSLGNLTNLAILYLH 211
           I++L +   +LS       +  L     + L    L       I  +L     LA L L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 212 NNSLSGSIPSEIGN-LKS----LSSLALGNNKL----CGSIPLFLGNLTNLDTLYLRNNS 262
           +N L       +   L++    +  L+L N  L    CG +   L  L  L  L+L +N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 263 FSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLS----GSIPSE 318
              +       L+ L    L                  L+ L L   SLS      + S 
Sbjct: 125 LGDA------GLQLLCEGLLDPQ-------------CRLEKLQLEYCSLSAASCEPLASV 165

Query: 319 IGNLKSLSGLELADNELSSSIPHYLG-----NLTNLAAFYLYKNSLS----GSIPSEIGN 369
           +        L +++N+++ +    L      +   L A  L    ++      +   + +
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225

Query: 370 LKSLSNLDLSENKLSGS-----IPHSLGNLTNLAILYLHSNTL----LGSIPREIGNLKS 420
             SL  L L  NKL         P  L   + L  L++    +     G + R +   +S
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285

Query: 421 LFELQLGDNKLSNSISHSLGNL-----THMTLLALYDNALSGVIPEELGNLVK----LTM 471
           L EL L  N+L +  +  L          +  L +   + +        +++     L  
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345

Query: 472 LTLSDNQLQGSIPNL------RNLTNLIRLRLNRNHLT----CNISESFGIHPKLTFIDL 521
           L +S+N+L+ +          +  + L  L L    ++     +++ +   +  L  +DL
Sbjct: 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405

Query: 522 SHNNF 526
           S+N  
Sbjct: 406 SNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 76.9 bits (190), Expect = 7e-15
 Identities = 84/475 (17%), Positives = 148/475 (31%), Gaps = 93/475 (19%)

Query: 107 SKLKYLDLSSNSFSGT-IPPQIGNLSMLKFLYLSANQFSGR----IPPQIGHLSYIEALH 161
             ++ LD+     S       +  L   + + L     +      I   +     +  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 162 LFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLS----G 217
           L  N+L         G+  + +   T +               +  L L N  L+    G
Sbjct: 63  LRSNELGDV------GVHCVLQGLQTPS-------------CKIQKLSLQNCCLTGAGCG 103

Query: 218 SIPSEIGNLKSLSSLALGNNKLCGS-----IPLFLGNLTNLDTLYLRNNSFSS----SIP 268
            + S +  L +L  L L +N L  +         L     L+ L L   S S+     + 
Sbjct: 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163

Query: 269 SEIGNLKSLSILELGENRLN--GSIPLSLG---NLTNLDTLYLYTNSLS----GSIPSEI 319
           S +        L +  N +N  G   L  G   +   L+ L L +  ++      +   +
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 320 GNLKSLSGLELADNELSSS-----IPHYLGNLTNLAAFYLYKNSLS----GSIPSEIGNL 370
            +  SL  L L  N+L         P  L   + L   ++++  ++    G +   +   
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283

Query: 371 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNK 430
           +SL  L L+ N+L             L    L                  L  L +    
Sbjct: 284 ESLKELSLAGNELGDE------GARLLCETLLEPGC-------------QLESLWVKSCS 324

Query: 431 LSN----SISHSLGNLTHMTLLALYDNAL--SGVIP--EELG-NLVKLTMLTLSDNQLQG 481
            +       S  L     +  L + +N L  +GV    + LG     L +L L+D  +  
Sbjct: 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384

Query: 482 S-----IPNLRNLTNLIRLRLNRNHLT----CNISESFGI-HPKLTFIDLSHNNF 526
           S        L    +L  L L+ N L       + ES       L  + L    +
Sbjct: 385 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 50/280 (17%), Positives = 86/280 (30%), Gaps = 73/280 (26%)

Query: 469 LTMLTLSDNQL--QGSIPNLRNLTNLIRLRLNRNHLT----CNISESFGIHPKLTFIDLS 522
           +  L +   +L        L  L     +RL+   LT     +IS +  ++P L  ++L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 523 HNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVID-LSANHIIGKIPSE 581
            N                                 +GD     V+  L            
Sbjct: 65  SNE--------------------------------LGDVGVHCVLQGLQTPS-------- 84

Query: 582 IGKLSSLIKLILRRNQL----FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLV--- 634
                 + KL L+   L     G L S L +L  L+ L LS N L ++  + L   +   
Sbjct: 85  ----CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP 140

Query: 635 --KLHYLNLSTNQF----IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC-----NMRS 683
             +L  L L          + +   L       EL +S+N + +     +C     +   
Sbjct: 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200

Query: 684 LEMLNLSHNNLSD----FIPRCFEEMNGLLYIDISYNELH 719
           LE L L    ++      +         L  + +  N+L 
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.2 bits (144), Expect = 3e-09
 Identities = 64/348 (18%), Positives = 112/348 (32%), Gaps = 64/348 (18%)

Query: 105 NISKLKYLDLSSNSFSGTIPPQIG-----NLSMLKFLYLSANQFSGRIPPQIG----HLS 155
            +  L+ L LS N         +          L+ L L     S      +        
Sbjct: 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 170

Query: 156 YIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSL 215
             + L +  N ++        G+  L +  L              +   L  L L +  +
Sbjct: 171 DFKELTVSNNDINEA------GVRVLCQ-GLKD------------SPCQLEALKLESCGV 211

Query: 216 S----GSIPSEIGNLKSLSSLALGNNKLCGS-----IPLFLGNLTNLDTLYLRNNSFS-- 264
           +      +   + +  SL  LALG+NKL         P  L   + L TL++     +  
Sbjct: 212 TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK 271

Query: 265 --SSIPSEIGNLKSLSILELGENRL--NGSIPLSLG---NLTNLDTLYLYTNSLSG---- 313
               +   +   +SL  L L  N L   G+  L          L++L++ + S +     
Sbjct: 272 GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS 331

Query: 314 SIPSEIGNLKSLSGLELADNELSSSIPHYLG-----NLTNLAAFYLYKNSLS----GSIP 364
              S +   + L  L++++N L  +    L        + L   +L    +S     S+ 
Sbjct: 332 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391

Query: 365 SEIGNLKSLSNLDLSENKLSGSIPHSLG-----NLTNLAILYLHSNTL 407
           + +    SL  LDLS N L  +    L          L  L L+    
Sbjct: 392 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.3 bits (126), Expect = 5e-07
 Identities = 53/290 (18%), Positives = 101/290 (34%), Gaps = 55/290 (18%)

Query: 107 SKLKYLDLSSNSFSGTIPPQIG-----NLSMLKFLYLSANQFSGR----IPPQIGHLSYI 157
              K L +S+N  +      +      +   L+ L L +   +      +   +   + +
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229

Query: 158 EALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLS- 216
             L L  N+L         G++ L    L  +             + L  L++    ++ 
Sbjct: 230 RELALGSNKLGD------VGMAELCPGLLHPS-------------SRLRTLWIWECGITA 270

Query: 217 ---GSIPSEIGNLKSLSSLALGNNKLCGS-----IPLFLGNLTNLDTLYLRNNSFSS--- 265
              G +   +   +SL  L+L  N+L            L     L++L++++ SF++   
Sbjct: 271 KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC 330

Query: 266 -SIPSEIGNLKSLSILELGENRL--NGSIPLSLG---NLTNLDTLYLYTNSLS----GSI 315
               S +   + L  L++  NRL   G   L  G     + L  L+L    +S     S+
Sbjct: 331 SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL 390

Query: 316 PSEIGNLKSLSGLELADNELSSSIPHYLG-----NLTNLAAFYLYKNSLS 360
            + +    SL  L+L++N L  +    L          L    LY    S
Sbjct: 391 AATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 89.1 bits (221), Expect = 4e-19
 Identities = 47/172 (27%), Positives = 68/172 (39%), Gaps = 12/172 (6%)

Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIP--HSLGNLTNLAILYLHSNTLLGSIPREI-GNL 418
           ++P  + +    + LDLS N LS  +    +   LTNL  L L  N L   I  E    +
Sbjct: 32  NVPQSLPS--YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPV 87

Query: 419 KSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 478
            +L  L L  N L         +L  + +L LY+N +  V      ++ +L  L LS NQ
Sbjct: 88  PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147

Query: 479 LQ----GSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLS-HNN 525
           +       I +   L  L+ L L+ N L           P      L  HNN
Sbjct: 148 ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 84.5 bits (209), Expect = 1e-17
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 17/176 (9%)

Query: 553 SLPPEIGDSSQLHVIDLSANHIIGKIPSEI--GKLSSLIKLILRRNQLFGQLPSE-LGSL 609
           ++P  +   S   ++DLS N++  ++ +E    +L++L  L+L  N L   + SE    +
Sbjct: 32  NVPQSL--PSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPV 87

Query: 610 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK-LEKLIHLSELDLSHN 668
             L YLDLSSN L         +L  L  L L  N  I  +     E +  L +L LS N
Sbjct: 88  PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN 146

Query: 669 FLGKEIPSQI----CNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHG 720
            +    P ++      +  L +L+LS N L        +++   +   +    LH 
Sbjct: 147 QI-SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY---LHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.5 bits (196), Expect = 6e-16
 Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 265 SSIPSEIGNLKSLSILELGENRLNGSIP--LSLGNLTNLDTLYLYTNSLSGSIPSEI-GN 321
            ++P  + +    ++L+L  N L   +    +   LTNL +L L  N L+  I SE    
Sbjct: 31  PNVPQSLPS--YTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVP 86

Query: 322 LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSE 380
           + +L  L+L+ N L +       +L  L    LY N +   +      ++  L  L LS+
Sbjct: 87  VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQ 145

Query: 381 NKLSGSIP----HSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFE--LQLGDN 429
           N++S   P         L  L +L L SN L      ++  L +  +  L L +N
Sbjct: 146 NQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 76.0 bits (187), Expect = 9e-15
 Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 16/168 (9%)

Query: 155 SYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHN 212
           SY   L L  N LS          L++L+ L L+ N L   I   +   + NL  L L +
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 213 NSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIP--LFLGNLTNLDTLYLRNNSFSSSIPS 269
           N L  ++   +  +L++L  L L NN +   +    F  ++  L  LYL  N   S  P 
Sbjct: 98  NHLH-TLDEFLFSDLQALEVLLLYNNHI-VVVDRNAF-EDMAQLQKLYLSQNQI-SRFPV 153

Query: 270 EI----GNLKSLSILELGENRLNGSIPLSLGNLTNL--DTLYLYTNSL 311
           E+      L  L +L+L  N+L       L  L     + LYL+ N L
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 18/162 (11%)

Query: 63  NNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQI-GNISKLKYLDLSSNSFSG 121
           NN +++            +  ++S+ L++ N +   I  +    +  L+YLDLSSN    
Sbjct: 49  NNLSRLRAEWTP----TRLTNLHSLLLSH-NHL-NFISSEAFVPVPNLRYLDLSSNHLH- 101

Query: 122 TIPPQI-GNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV---- 175
           T+   +  +L  L+ L L  N     +       ++ ++ L+L +NQ+S   P E+    
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDG 159

Query: 176 GGLSSLNELALTSNFLKGSIPPSLGNLTNL--AILYLHNNSL 215
             L  L  L L+SN LK      L  L       LYLHNN L
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 86.6 bits (215), Expect = 6e-19
 Identities = 50/234 (21%), Positives = 80/234 (34%), Gaps = 17/234 (7%)

Query: 247 LGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYL 306
              L N     L   S +         L  +       + +  S+   +   TNL  L+L
Sbjct: 15  DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHL 70

Query: 307 YTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSE 366
             N +S  + S + +L  L  L +  N L +        L+ L   +L  N L       
Sbjct: 71  SHNQIS-DL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRL---FLDNNELRD--TDS 123

Query: 367 IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQL 426
           + +LK+L  L +  NKL  SI   LG L+ L +L LH N +  +    +  LK +  + L
Sbjct: 124 LIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDL 179

Query: 427 GDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 480
              K  N        L     +   D     + P  + N        +      
Sbjct: 180 TGQKCVNEPVKYQPELYITNTVKDPDGRW--ISPYYISNGGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 83.5 bits (207), Expect = 7e-18
 Identities = 50/236 (21%), Positives = 87/236 (36%), Gaps = 17/236 (7%)

Query: 199 LGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYL 258
              L N     L   S++         L  + +    N+ +  S+   +   TNL  L+L
Sbjct: 15  DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHL 70

Query: 259 RNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSE 318
            +N  S   P  + +L  L  L +  NRL     L+      L  L+L  N L       
Sbjct: 71  SHNQISDLSP--LKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRD--TDS 123

Query: 319 IGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDL 378
           + +LK+L  L + +N+L S +   LG L+ L    L+ N ++ +    +  LK ++ +DL
Sbjct: 124 LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEIT-NT-GGLTRLKKVNWIDL 179

Query: 379 SENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNS 434
           +  K           L     +       +   P  I N  S  +  +       +
Sbjct: 180 TGQKCVNEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 40/189 (21%), Positives = 79/189 (41%), Gaps = 18/189 (9%)

Query: 317 SEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNL 376
                L +     L    ++  +      L+ +  F    +++  S+ + +    +L  L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKEL 68

Query: 377 DLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLK--SLFELQLGDNKLSNS 434
            LS N++S  +   L +LT L  L ++ N L     + +  +    L  L L +N+L + 
Sbjct: 69  HLSHNQIS-DLS-PLKDLTKLEELSVNRNRL-----KNLNGIPSACLSRLFLDNNELRD- 120

Query: 435 ISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIR 494
              SL +L ++ +L++ +N L  +    LG L KL +L L  N++  +   L  L  +  
Sbjct: 121 TD-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT-NTGGLTRLKKVNW 176

Query: 495 LRLNRNHLT 503
           + L      
Sbjct: 177 IDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 47/239 (19%), Positives = 89/239 (37%), Gaps = 22/239 (9%)

Query: 461 EELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFID 520
                L       L    +   + + + L+ +     + +++  ++         L  + 
Sbjct: 13  FPDPGLANAVKQNLGKQSVT-DLVSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELH 69

Query: 521 LSHNNFYGQIS--SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKI 578
           LSHN    QIS  S       L    V+ N +          S+ L  + L  N +  + 
Sbjct: 70  LSHN----QISDLSPLKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNEL--RD 120

Query: 579 PSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHY 638
              +  L +L  L +R N+L  +    LG L +LE LDL  N ++N+    L  L K+++
Sbjct: 121 TDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNW 176

Query: 639 LNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI-PSQICNMRSLEMLNLSHNNLSD 696
           ++L+  + + E      +L   + +    +  G+ I P  I N  S     +       
Sbjct: 177 IDLTGQKCVNEPVKYQPELYITNTV---KDPDGRWISPYYISNGGSYVDGCVLWELPVY 232

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.1 bits (185), Expect = 5e-15
 Identities = 34/233 (14%), Positives = 83/233 (35%), Gaps = 18/233 (7%)

Query: 439 LGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLN 498
              L +     L   +++ ++      L  +      ++ +Q S+  ++  TNL  L L+
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLS 71

Query: 499 RNHLTCNISESFGIHPKLTFIDLSHNNFYGQISS-DWGKCPNLGTFDVSVNNIIGSLPPE 557
            N ++ ++        KL  + ++ N    ++ + +      L    +  N +       
Sbjct: 72  HNQIS-DL-SPLKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFLDNNEL--RDTDS 123

Query: 558 IGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDL 617
           +     L ++ +  N +  K    +G LS L  L L  N++       L  L ++ ++DL
Sbjct: 124 LIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDL 179

Query: 618 SSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFL 670
           +  +  N   +    L   + +     ++I   P  +       +  +     
Sbjct: 180 TGQKCVNEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGSYVDGCVLWELP 230

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 38/189 (20%), Positives = 77/189 (40%), Gaps = 18/189 (9%)

Query: 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFEL 424
                L +    +L +  ++  +      L+ +      ++  + S+   +    +L EL
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKEL 68

Query: 425 QLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP 484
            L  N++S+ +S  L +LT +  L++  N L  +          L+ L L +N+L+    
Sbjct: 69  HLSHNQISD-LS-PLKDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNELR-DTD 122

Query: 485 NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS--SDWGKCPNLGT 542
           +L +L NL  L +  N L  +I    G   KL  +DL  N    +I+      +   +  
Sbjct: 123 SLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGN----EITNTGGLTRLKKVNW 176

Query: 543 FDVSVNNII 551
            D++    +
Sbjct: 177 IDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 68.5 bits (168), Expect = 8e-13
 Identities = 45/211 (21%), Positives = 87/211 (41%), Gaps = 16/211 (7%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIG 152
             +  ++      +S ++  +  +++   ++   +   + LK L+LS NQ S  + P + 
Sbjct: 29  QSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQIS-DLSP-LK 82

Query: 153 HLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN 212
            L+ +E L + +N+L           + L+ L L +N L      SL +L NL IL + N
Sbjct: 83  DLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNEL--RDTDSLIHLKNLEILSIRN 137

Query: 213 NSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIG 272
           N L  SI   +G L  L  L L  N++  +    L  L  ++ + L      +       
Sbjct: 138 NKLK-SI-VMLGFLSKLEVLDLHGNEIT-NTG-GLTRLKKVNWIDLTGQKCVNEPVKYQP 193

Query: 273 NLKSLSILELGENRLNGSIPLS-LGNLTNLD 302
            L   + ++  + R      +S  G+  +  
Sbjct: 194 ELYITNTVKDPDGRWISPYYISNGGSYVDGC 224

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 46/230 (20%), Positives = 87/230 (37%), Gaps = 23/230 (10%)

Query: 472 LTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS 531
                  +   +     L N ++  L +  +T     S      +   +  ++N   Q  
Sbjct: 2   SIQRPTPIN-QVFPDPGLANAVKQNLGKQSVT--DLVSQKELSGVQNFNGDNSNI--QSL 56

Query: 532 SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLS--SLI 589
           +      NL    +S +N I  L P + D ++L  + ++ N +       +  +    L 
Sbjct: 57  AGMQFFTNLKELHLS-HNQISDLSP-LKDLTKLEELSVNRNRL-----KNLNGIPSACLS 109

Query: 590 KLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQE 649
           +L L  N+L  +    L  L  LE L + +N+L + +   LG L KL  L+L  N+ I  
Sbjct: 110 RLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNE-ITN 164

Query: 650 IPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 699
               L +L  ++ +DL+      E    +     L + N   +    +I 
Sbjct: 165 TG-GLTRLKKVNWIDLTGQKCVNE---PVKYQPELYITNTVKDPDGRWIS 210

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.4 bits (160), Expect = 9e-12
 Identities = 39/198 (19%), Positives = 82/198 (41%), Gaps = 16/198 (8%)

Query: 521 LSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPS 580
           +       Q+  D     N    ++   ++  +      + S +   +   ++I  +  +
Sbjct: 3   IQRPTPINQVFPD-PGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNI--QSLA 57

Query: 581 EIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLN 640
            +   ++L +L L  NQ+     S L  L +LE L ++ NRL N    +      L  L 
Sbjct: 58  GMQFFTNLKELHLSHNQI--SDLSPLKDLTKLEELSVNRNRLKNL---NGIPSACLSRLF 112

Query: 641 LSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPR 700
           L  N+ +++    L  L +L  L + +N L K I   +  +  LE+L+L  N +++    
Sbjct: 113 LDNNE-LRDTD-SLIHLKNLEILSIRNNKL-KSI-VMLGFLSKLEVLDLHGNEITNTGG- 167

Query: 701 CFEEMNGLLYIDISYNEL 718
               +  + +ID++  + 
Sbjct: 168 -LTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 13/186 (6%)

Query: 103 IGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHL 162
           +   + LK L LS N  S  + P + +L+ L+ L ++ N+    +   I     +  L L
Sbjct: 59  MQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLK-NLNG-IPSAC-LSRLFL 113

Query: 163 FKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSE 222
             N+L       +  L +L  L++ +N LK SI   LG L+ L +L LH N ++ +    
Sbjct: 114 DNNELRDTDS--LIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEIT-NT-GG 167

Query: 223 IGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILEL 282
           +  LK ++ + L   K       +   L   +T+   +  + S  P  I N  S     +
Sbjct: 168 LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGSYVDGCV 225

Query: 283 GENRLN 288
                 
Sbjct: 226 LWELPV 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 48/214 (22%), Positives = 79/214 (36%), Gaps = 16/214 (7%)

Query: 202 LTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIP--LFLGNLTNLDTLYL 258
             +   L L    L  +IPS    NL ++S + +  +     +    F   L+ +  + +
Sbjct: 30  PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN-LSKVTHIEI 87

Query: 259 RNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIP--LSLGNLTNLDTLYLYTNSLSGSI 315
           RN    + I  +    L  L  L +    L    P    + +      L +  N    SI
Sbjct: 88  RNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 316 PSEI--GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI--GNLK 371
           P     G       L+L +N  +S +  Y  N T L A YL KN     I  +   G   
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205

Query: 372 SLSNLDLSENKLSGSIPH-SLGNLTNLAILYLHS 404
             S LD+S+  ++ ++P   L +L  L      +
Sbjct: 206 GPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 80.8 bits (200), Expect = 3e-17
 Identities = 37/210 (17%), Positives = 67/210 (31%), Gaps = 10/210 (4%)

Query: 250 LTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPL-SLGNLTNLDTLYLYT 308
             +  TL L      +       NL ++S + +  +     +   S  NL+ +  + +  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 309 NSLSGSIPSEI-GNLKSLSGLELADNELSSSIPHY--LGNLTNLAAFYLYKNSLSGSIPS 365
                 I  +    L  L  L + +  L    P    + +        +  N    SIP 
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 366 EI--GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI--GNLKSL 421
               G       L L  N  + S+     N T L  +YL+ N  L  I ++   G     
Sbjct: 149 NAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207

Query: 422 FELQLGDNKLSNSISHSLGNLTHMTLLALY 451
             L +    ++   S  L +L  +     +
Sbjct: 208 SLLDVSQTSVTALPSKGLEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 42/245 (17%), Positives = 84/245 (34%), Gaps = 34/245 (13%)

Query: 404 SNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEEL 463
           +   +  IP       S   L+L +  L    SH+  NL +++ + +  +     +    
Sbjct: 19  TCKDIQRIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS 75

Query: 464 -GNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFID 520
             NL K+T + + + +    I    L+ L  L  L +    L       F   P LT + 
Sbjct: 76  FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-----MF---PDLTKVY 127

Query: 521 LSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEI--GDSSQLHVIDLSANHIIGKI 578
            +   F                 +++ N  + S+P     G  ++   + L  N     +
Sbjct: 128 STDIFF---------------ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSV 171

Query: 579 PSEIGKLSSLIKLILRRNQLFGQLPSEL--GSLIQLEYLDLSSNRLSNSIPRSLGNLVKL 636
                  + L  + L +N+    +  +   G       LD+S   ++    + L +L +L
Sbjct: 172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKEL 231

Query: 637 HYLNL 641
              N 
Sbjct: 232 IARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 51/233 (21%), Positives = 81/233 (34%), Gaps = 37/233 (15%)

Query: 109 LKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQL 167
            + L L       TIP     NL  +  +Y+S +            L  +E+ H F    
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSID----------VTLQQLES-HSFY--- 77

Query: 168 SGPIPHEVGGLSSLNELALTSNFLKGSIPPS-LGNLTNLAILYLHNNSLSGSIPSE--IG 224
                     LS +  + + +      I P  L  L  L  L + N  L    P    + 
Sbjct: 78  ---------NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVY 127

Query: 225 NLKSLSSLALGNNKLCGSIP--LFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILEL 282
           +      L + +N    SIP   F G      TL L NN F +S+     N   L  + L
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYL 186

Query: 283 GENRLNGSIPLSL--GNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADN 333
            +N+    I      G  +    L +   S++ ++PS+   L+ L  L   + 
Sbjct: 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG--LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 75.0 bits (185), Expect = 3e-15
 Identities = 40/232 (17%), Positives = 82/232 (35%), Gaps = 15/232 (6%)

Query: 469 LTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG 528
                ++   +Q  IP+L    +   L+L   HL    S +F   P ++ I +S +    
Sbjct: 13  EEDFRVTCKDIQ-RIPSL--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 529 QISSDW-GKCPNLGTFDVSVNNIIGSLPPEI-GDSSQLHVIDLSANHIIGKIPSE--IGK 584
           Q+ S        +   ++     +  + P+   +   L  + +    +    P    +  
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYS 128

Query: 585 LSSLIKLILRRNQLFGQLPSEL--GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLS 642
                 L +  N     +P     G   +   L L +N  + S+     N  KL  + L+
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187

Query: 643 TNQFIQEIPIK-LEKLIH-LSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSH 691
            N+++  I       +    S LD+S   +   +PS+   +++ L   N   
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 15/183 (8%)

Query: 548 NNIIGSLPPEI-GDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSE 605
              + ++P     +   +  I +S +  + ++ S     LS +  + +R  +    +  +
Sbjct: 40  ETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99

Query: 606 -LGSLIQLEYLDLSSNRLSNSIP--RSLGNLVKLHYLNLSTNQFIQEIP----IKLEKLI 658
            L  L  L++L + +  L    P    + +      L ++ N ++  IP      L    
Sbjct: 100 ALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE- 157

Query: 659 HLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPR-CFEEM-NGLLYIDISYN 716
               L L +N     +     N   L+ + L+ N     I +  F  + +G   +D+S  
Sbjct: 158 -TLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215

Query: 717 ELH 719
            + 
Sbjct: 216 SVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 17/118 (14%), Positives = 41/118 (34%), Gaps = 3/118 (2%)

Query: 612 LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFL 670
            + L L    L      +  NL  +  + +S +  +Q++       L  ++ +++ +   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 671 GKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCF-EEMNGLLYIDISYNELHGPIPNST 726
              I       +  L+ L + +  L  F         +    ++I+ N     IP + 
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 80.8 bits (200), Expect = 7e-17
 Identities = 63/244 (25%), Positives = 95/244 (38%), Gaps = 50/244 (20%)

Query: 99  IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIE 158
            P      ++    +L   S +     Q   L+ +  +  + +         I +L  + 
Sbjct: 13  FPDDAF--AETIKANLKKKSVT-DAVTQNE-LNSIDQIIANNSDIKS--VQGIQYLPNVR 66

Query: 159 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLG---NLTNLAILYLHNNSL 215
            L L  N+L                               +     LTNL  L L  N L
Sbjct: 67  YLALGGNKLH-----------------------------DISALKELTNLTYLILTGNQL 97

Query: 216 SGSIPSEI-GNLKSLSSLALGNNKLCGSIP--LFLGNLTNLDTLYLRNNSFSSSIPSEI- 271
             S+P+ +   L +L  L L  N+L  S+P  +F   LTNL  L L +N   S +P  + 
Sbjct: 98  Q-SLPNGVFDKLTNLKELVLVENQL-QSLPDGVF-DKLTNLTYLNLAHNQLQS-LPKGVF 153

Query: 272 GNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLE 329
             L +L+ L+L  N+L  S+P  +   LT L  L LY N L  S+P  +   L SL  + 
Sbjct: 154 DKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIW 211

Query: 330 LADN 333
           L DN
Sbjct: 212 LHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 17/208 (8%)

Query: 299 TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS--SIPHYLGNLTNLAAFYLYK 356
                  L   S++    ++   L S+  +   ++++ S   I +    L N+    L  
Sbjct: 19  AETIKANLKKKSVT-DAVTQNE-LNSIDQIIANNSDIKSVQGIQY----LPNVRYLALGG 72

Query: 357 NSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREI 415
           N L   I + +  L +L+ L L+ N+L  S+P+ +   LTNL  L L  N L  S+P  +
Sbjct: 73  NKLH-DISA-LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL-QSLPDGV 128

Query: 416 GN-LKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTL 474
            + L +L  L L  N+L +        LT++T L L  N L  +       L +L  L L
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188

Query: 475 SDNQLQGSIPN--LRNLTNLIRLRLNRN 500
             NQL+ S+P+     LT+L  + L+ N
Sbjct: 189 YQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 60/221 (27%), Positives = 91/221 (41%), Gaps = 22/221 (9%)

Query: 265 SSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKS 324
              P +           L +  +      +   L ++D +    + +  S+   I  L +
Sbjct: 11  QIFPDDAFA--ETIKANLKKKSVT-DAV-TQNELNSIDQIIANNSDIK-SVQG-IQYLPN 64

Query: 325 LSGLELADNELSSSIPHYLG---NLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSE 380
           +  L L  N+L       +     LTNL    L  N L  S+P+ +   L +L  L L E
Sbjct: 65  VRYLALGGNKLHD-----ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVE 118

Query: 381 NKLSGSIPHSLGN-LTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNKLSNSISHS 438
           N+L  S+P  + + LTNL  L L  N L  S+P+ +   L +L EL L  N+L  S+   
Sbjct: 119 NQLQ-SLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQ-SLPEG 175

Query: 439 L-GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 478
           +   LT +  L LY N L  V       L  L  + L DN 
Sbjct: 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 55/195 (28%), Positives = 79/195 (40%), Gaps = 19/195 (9%)

Query: 314 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 373
             P +           L    ++ ++      L ++       + +  S+   I  L ++
Sbjct: 12  IFPDDAFA--ETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNV 65

Query: 374 SNLDLSENKLSGSIPHSLG---NLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDN 429
             L L  NKL       +     LTNL  L L  N L  S+P  +   L +L EL L +N
Sbjct: 66  RYLALGGNKLH-----DISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVEN 119

Query: 430 KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LR 487
           +L +        LT++T L L  N L  +       L  LT L LS NQLQ S+P     
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFD 178

Query: 488 NLTNLIRLRLNRNHL 502
            LT L  LRL +N L
Sbjct: 179 KLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 68.5 bits (168), Expect = 9e-13
 Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 21/170 (12%)

Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL--LGSIPREIGNLK 419
             P +          +L +  ++     +   L ++  +  +++ +  +  I      L 
Sbjct: 12  IFPDDAFA--ETIKANLKKKSVT-DAV-TQNELNSIDQIIANNSDIKSVQGIQY----LP 63

Query: 420 SLFELQLGDNKLSNSISHSLG---NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 476
           ++  L LG NKL       +     LT++T L L  N L  +       L  L  L L +
Sbjct: 64  NVRYLALGGNKLH-----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118

Query: 477 NQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHN 524
           NQLQ S+P+     LTNL  L L  N L       F     LT +DLS+N
Sbjct: 119 NQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 15/187 (8%)

Query: 537 CPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRN 596
                         +     +   +S +  I  + +  I  +   I  L ++  L L  N
Sbjct: 17  AFAETIKANLKKKSVTDAVTQNELNS-IDQIIANNS-DIKSVQG-IQYLPNVRYLALGGN 73

Query: 597 QLFGQLPSELG---SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK 653
           +L      ++     L  L YL L+ N+L +        L  L  L L  NQ +Q +P  
Sbjct: 74  KL-----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDG 127

Query: 654 L-EKLIHLSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYI 711
           + +KL +L+ L+L+HN L + +P  +   + +L  L+LS+N L       F+++  L  +
Sbjct: 128 VFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186

Query: 712 DISYNEL 718
            +  N+L
Sbjct: 187 RLYQNQL 193

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 80.1 bits (198), Expect = 8e-17
 Identities = 55/169 (32%), Positives = 73/169 (43%), Gaps = 9/169 (5%)

Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKS 420
           S+PS I        LDL    L+     +   LT L  L L  N L  ++   +  +L  
Sbjct: 28  SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTE 84

Query: 421 LFELQLGDNKLSNSISHSL-GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQL 479
           L  L L +N+L+ S+   +  +LT +  L L  N L  +       L KL  L L+ NQL
Sbjct: 85  LGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143

Query: 480 QGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 526
           Q SIP      LTNL  L L+ N L      +F    KL  I L  N F
Sbjct: 144 Q-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 78.6 bits (194), Expect = 3e-16
 Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 14/162 (8%)

Query: 251 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTN 309
            + + L L++   ++   +    L  L+ L L  N+L  ++   +  +LT L TL L  N
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANN 93

Query: 310 SLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYLG---NLTNLAAFYLYKNSLSGSIPS 365
            L+ S+P  +  +L  L  L L  N+L  S+P   G    LT L    L  N L  SIP+
Sbjct: 94  QLA-SLPLGVFDHLTQLDKLYLGGNQL-KSLPS--GVFDRLTKLKELRLNTNQLQ-SIPA 148

Query: 366 EI-GNLKSLSNLDLSENKLSGSIPH-SLGNLTNLAILYLHSN 405
                L +L  L LS N+L  S+PH +   L  L  + L  N
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 78.2 bits (193), Expect = 4e-16
 Identities = 54/169 (31%), Positives = 76/169 (44%), Gaps = 12/169 (7%)

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP--LFLGNLT 251
           S+P   G   +   L L +  L+    +    L  L+ L L  N+L  ++   +F   LT
Sbjct: 28  SVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDD-LT 83

Query: 252 NLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTN 309
            L TL L NN   +S+P  +  +L  L  L LG N+L  S+P  +   LT L  L L TN
Sbjct: 84  ELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTN 141

Query: 310 SLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKN 357
            L  SIP+     L +L  L L+ N+L S        L  L    L+ N
Sbjct: 142 QLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 75.1 bits (185), Expect = 3e-15
 Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 10/169 (5%)

Query: 314 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKS 372
           S+PS I        L+L    L++        LT L    L  N L  ++ + +  +L  
Sbjct: 28  SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTE 84

Query: 373 LSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNK 430
           L  L L+ N+L+ S+P  +  +LT L  LYL  N L  S+P  +   L  L EL+L  N+
Sbjct: 85  LGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQ 142

Query: 431 LSNSISHSL-GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 478
           L  SI       LT++  L+L  N L  V       L KL  +TL  NQ
Sbjct: 143 LQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 73.6 bits (181), Expect = 1e-14
 Identities = 51/155 (32%), Positives = 66/155 (42%), Gaps = 10/155 (6%)

Query: 136 LYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGS 194
           L L +   +         L+ +  L+L  NQL   +   V   L+ L  L L +N L  S
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA-S 97

Query: 195 IPPSL-GNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIP--LFLGNL 250
           +P  +  +LT L  LYL  N L  S+PS +   L  L  L L  N+L  SIP   F   L
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL-QSIPAGAF-DKL 154

Query: 251 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285
           TNL TL L  N   S        L  L  + L  N
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 50/157 (31%), Positives = 73/157 (46%), Gaps = 10/157 (6%)

Query: 110 KYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLS 168
           + LDL S   +         L+ L +L L  NQ    +   +   L+ +  L L  NQL+
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA 96

Query: 169 GPIPHEV-GGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSLSGSIPSEI-GN 225
             +P  V   L+ L++L L  N LK S+P  +   LT L  L L+ N L  SIP+     
Sbjct: 97  S-LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDK 153

Query: 226 LKSLSSLALGNNKLCGSIPL-FLGNLTNLDTLYLRNN 261
           L +L +L+L  N+L  S+P      L  L T+ L  N
Sbjct: 154 LTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 71.7 bits (176), Expect = 6e-14
 Identities = 56/181 (30%), Positives = 74/181 (40%), Gaps = 34/181 (18%)

Query: 158 EALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSLS 216
           E L L    L+        GL+ L  L L  N L+ ++   +  +LT L  L L NN L+
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 217 GSIPSEI-GNLKSLSSLALGNNKLCGSIP--LFLGNLTNLDTLYLRNNSFSSSIPSEIGN 273
            S+P  +  +L  L  L LG N+L  S+P  +F   LT L  L L  N   S IP+   +
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVF-DRLTKLKELRLNTNQLQS-IPAGAFD 152

Query: 274 LKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLELAD 332
                                   LTNL TL L TN L  S+P      L  L  + L  
Sbjct: 153 -----------------------KLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFG 188

Query: 333 N 333
           N
Sbjct: 189 N 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 21/176 (11%)

Query: 91  NVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPP 149
               +  +       ++KL +L+L  N    T+   +  +L+ L  L L+ NQ +  +P 
Sbjct: 43  QSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLPL 100

Query: 150 QI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSL-GNLTNLA 206
            +  HL+ ++ L+L  NQL   +P  V   L+ L EL L +N L+ SIP      LTNL 
Sbjct: 101 GVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQ 158

Query: 207 ILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKL-CGSIPLFLGNLTNLDTLYLRN 260
            L L  N L  S+P      L  L ++ L  N+  C          +  + LYL  
Sbjct: 159 TLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDC----------SRCEILYLSQ 203

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 54/207 (26%), Positives = 76/207 (36%), Gaps = 59/207 (28%)

Query: 446 TLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLT 503
             L L    L+ +       L KLT L L  NQLQ ++      +LT L  L L  N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 504 CNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-S 562
                                                            SLP  + D  +
Sbjct: 97  -------------------------------------------------SLPLGVFDHLT 107

Query: 563 QLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSEL-GSLIQLEYLDLSSN 620
           QL  + L  N +   +PS +  +L+ L +L L  NQL   +P+     L  L+ L LS+N
Sbjct: 108 QLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTN 165

Query: 621 RLSNSIPR-SLGNLVKLHYLNLSTNQF 646
           +L  S+P  +   L KL  + L  NQF
Sbjct: 166 QLQ-SVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 51/217 (23%), Positives = 76/217 (35%), Gaps = 57/217 (26%)

Query: 408 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLV 467
           L S+P  I       +L L    L+     +   LT +T L L  N L  +      +L 
Sbjct: 26  LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83

Query: 468 KLTMLTLSDNQLQGSIPNL--RNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNN 525
           +L  L L++NQL  S+P     +LT L +L L  N L                       
Sbjct: 84  ELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK---------------------- 120

Query: 526 FYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEI-G 583
                                      SLP  + D  ++L  + L+ N  +  IP+    
Sbjct: 121 ---------------------------SLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFD 152

Query: 584 KLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSN 620
           KL++L  L L  NQL          L +L+ + L  N
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 4/108 (3%)

Query: 613 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLG 671
           E LDL S  L+     +   L KL +LNL  NQ +Q +   + + L  L  L L++N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQL- 95

Query: 672 KEIPSQI-CNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
             +P  +  ++  L+ L L  N L       F+ +  L  + ++ N+L
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 7/147 (4%)

Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKS 420
            IP+ +   ++++ + L +N +    P +      L  + L +N +   +  +    L+S
Sbjct: 25  EIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRS 81

Query: 421 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 480
           L  L L  NK++         L  + LL L  N ++ +  +   +L  L +L+L DN+LQ
Sbjct: 82  LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141

Query: 481 GSIPN--LRNLTNLIRLRLNRNHLTCN 505
            +I       L  +  + L +N   C+
Sbjct: 142 -TIAKGTFSPLRAIQTMHLAQNPFICD 167

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 14/146 (9%)

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIP--LFLGNL 250
            IP +L     +  + L  N++   IP       K L  + L NN++   +    F G L
Sbjct: 25  EIPTNL--PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQG-L 79

Query: 251 TNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPL-SLGNLTNLDTLYLYT 308
            +L++L L  N  +  +P  +   L SL +L L  N++N  + + +  +L NL+ L LY 
Sbjct: 80  RSLNSLVLYGNKITE-LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYD 137

Query: 309 NSLSGSIPSEI-GNLKSLSGLELADN 333
           N L  +I       L+++  + LA N
Sbjct: 138 NKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 8/132 (6%)

Query: 136 LYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKG 193
           + L  N     IPP        +  + L  NQ+S  +  +   GL SLN L L  N +  
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 194 SIPPSL-GNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLT 251
            +P SL   L +L +L L+ N ++  +  +   +L +L+ L+L +NKL          L 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 252 NLDTLYLRNNSF 263
            + T++L  N F
Sbjct: 153 AIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 70.4 bits (173), Expect = 8e-14
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 10/132 (7%)

Query: 183 ELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLC 240
           E+ L  N +K  IPP +      L  + L NN +S  +  +    L+SL+SL L  NK+ 
Sbjct: 36  EIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI- 92

Query: 241 GSIP--LFLGNLTNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSLGN 297
             +P  LF   L +L  L L  N  +  +  +   +L +L++L L +N+L      +   
Sbjct: 93  TELPKSLF-EGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 298 LTNLDTLYLYTN 309
           L  + T++L  N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 8/135 (5%)

Query: 251 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPL-SLGNLTNLDTLYLYTN 309
             +  + L  N+     P      K L  ++L  N+++  +   +   L +L++L LY N
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90

Query: 310 SLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYL-GNLTNLAAFYLYKNSLSGSIPSEI 367
            ++  +P  +   L SL  L L  N+++  +      +L NL    LY N L  +I    
Sbjct: 91  KIT-ELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQ-TIAKGT 147

Query: 368 -GNLKSLSNLDLSEN 381
              L+++  + L++N
Sbjct: 148 FSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 10/133 (7%)

Query: 110 KYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQL 167
             + L  N+    IPP        L+ + LS NQ S  + P     L  + +L L+ N++
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92

Query: 168 SGPIPHEV-GGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEI-G 224
           +  +P  +  GL SL  L L +N +   +   +  +L NL +L L++N L  +I      
Sbjct: 93  TE-LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFS 149

Query: 225 NLKSLSSLALGNN 237
            L+++ ++ L  N
Sbjct: 150 PLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 64.7 bits (158), Expect = 7e-12
 Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 4/129 (3%)

Query: 590 KLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQE 649
           ++ L +N +    P       +L  +DLS+N++S   P +   L  L+ L L  N+ I E
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITE 94

Query: 650 IPIKL-EKLIHLSELDLSHNFLGKEIPSQI-CNMRSLEMLNLSHNNLSDFIPRCFEEMNG 707
           +P  L E L  L  L L+ N +   +      ++ +L +L+L  N L       F  +  
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153

Query: 708 LLYIDISYN 716
           +  + ++ N
Sbjct: 154 IQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 4/109 (3%)

Query: 613 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLG 671
             + L  N +    P +     KL  ++LS NQ I E+     + L  L+ L L  N + 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKI- 92

Query: 672 KEIPSQI-CNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719
            E+P  +   + SL++L L+ N ++      F++++ L  + +  N+L 
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 3/106 (2%)

Query: 423 ELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGS 482
           E++L  N +      +      +  + L +N +S + P+    L  L  L L  N++   
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-E 94

Query: 483 IPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 526
           +P      L +L  L LN N + C   ++F     L  + L  N  
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 548 NNIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSE 605
            N I  +PP       +L  IDLS N I  ++  +    L SL  L+L  N++  +LP  
Sbjct: 41  QNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKI-TELPKS 98

Query: 606 L-GSLIQLEYLDLSSNRLSNSIPR-SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSEL 663
           L   L  L+ L L++N+++  +   +  +L  L+ L+L  N+           L  +  +
Sbjct: 99  LFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157

Query: 664 DLSHN 668
            L+ N
Sbjct: 158 HLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 30/161 (18%)

Query: 490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 549
             +  +RL +N +      +F  + KL  IDLS+N    QIS                  
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN----QISE----------------- 70

Query: 550 IIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSEL- 606
               L P+       L+ + L  N I  ++P  +   L SL  L+L  N++   L  +  
Sbjct: 71  ----LAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKI-NCLRVDAF 124

Query: 607 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFI 647
             L  L  L L  N+L      +   L  +  ++L+ N FI
Sbjct: 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 74.7 bits (184), Expect = 3e-15
 Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 8/148 (5%)

Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREI-GNLK 419
            IP  I   +  + L L+ N+ +      +   L  L  +   +N +   I         
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGAS 81

Query: 420 SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQL 479
            + E+ L  N+L N        L  +  L L  N ++ V  +    L  + +L+L DNQ+
Sbjct: 82  GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141

Query: 480 QGSIPN--LRNLTNLIRLRLNRNHLTCN 505
             ++       L +L  L L  N   CN
Sbjct: 142 T-TVAPGAFDTLHSLSTLNLLANPFNCN 168

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 71.2 bits (175), Expect = 5e-14
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 11/134 (8%)

Query: 136 LYLSANQFSGRIPPQIG--HLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLK 192
           L L+ N+F+  +        L  +  ++   N+++  I      G S +NE+ LTSN L+
Sbjct: 37  LRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRLE 94

Query: 193 GSIPPSL-GNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPL-FLGN 249
            ++   +   L +L  L L +N ++  + ++    L S+  L+L +N++  ++       
Sbjct: 95  -NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAFDT 151

Query: 250 LTNLDTLYLRNNSF 263
           L +L TL L  N F
Sbjct: 152 LHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 70.5 bits (173), Expect = 9e-14
 Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 13/146 (8%)

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIP--LFLGNL 250
            IP  +      A L L+NN  +    + I   L  L  +   NNK+   I    F G  
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEG-A 80

Query: 251 TNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPL-SLGNLTNLDTLYLYT 308
           + ++ + L +N   + +  ++   L+SL  L L  NR+   +   S   L+++  L LY 
Sbjct: 81  SGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYD 138

Query: 309 NSLSGSIPSEI-GNLKSLSGLELADN 333
           N ++ ++       L SLS L L  N
Sbjct: 139 NQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 11/132 (8%)

Query: 112 LDLSSNSFSGTIPPQIG--NLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLS 168
           L L++N F+  +        L  L+ +  S N+ +  I        S +  + L  N+L 
Sbjct: 37  LRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE 94

Query: 169 GPIPHEV-GGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEI-GN 225
             + H++  GL SL  L L SN +   +   S   L+++ +L L++N ++ ++       
Sbjct: 95  N-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDT 151

Query: 226 LKSLSSLALGNN 237
           L SLS+L L  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 68.1 bits (167), Expect = 5e-13
 Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 5/134 (3%)

Query: 251 TNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTN 309
                L L NN F+    + I   L  L  +    N++      +    + ++ + L +N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 310 SLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI- 367
            L  ++  ++   L+SL  L L  N ++         L+++    LY N ++ ++     
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAF 149

Query: 368 GNLKSLSNLDLSEN 381
             L SLS L+L  N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 3/130 (2%)

Query: 353 YLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSI 411
            L  N  +    + I   L  L  ++ S NK++     +    + +  + L SN  L ++
Sbjct: 38  RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENV 96

Query: 412 PREI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLT 470
             ++   L+SL  L L  N+++   + S   L+ + LL+LYDN ++ V P     L  L+
Sbjct: 97  QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156

Query: 471 MLTLSDNQLQ 480
            L L  N   
Sbjct: 157 TLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 7/143 (4%)

Query: 553 SLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSELGSLIQ 611
            +P  I   +    + L+ N       + I  KL  L K+    N++             
Sbjct: 25  KIPEHIPQYTA--ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 612 LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFL 670
           +  + L+SNRL N   +    L  L  L L +N+ I  +       L  +  L L  N +
Sbjct: 83  VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQI 141

Query: 671 GKEIPSQI-CNMRSLEMLNLSHN 692
              +       + SL  LNL  N
Sbjct: 142 -TTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 27/128 (21%), Positives = 60/128 (46%), Gaps = 9/128 (7%)

Query: 91  NVNQIFGIIPPQI-GNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIP 148
           N N+   +    I   + +L+ ++ S+N  +  I        S +  + L++N+    + 
Sbjct: 40  NNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE-NVQ 97

Query: 149 PQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPP-SLGNLTNL 205
            ++   L  ++ L L  N+++  + ++   GLSS+  L+L  N +  ++ P +   L +L
Sbjct: 98  HKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSL 155

Query: 206 AILYLHNN 213
           + L L  N
Sbjct: 156 STLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 613 EYLDLSSNRLSNSIPRSL-GNLVKLHYLNLSTNQFIQEIPIK-LEKLIHLSELDLSHNFL 670
             L L++N  +      +   L +L  +N S N+ I +I     E    ++E+ L+ N L
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRL 93

Query: 671 GKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719
            + +  ++   + SL+ L L  N ++      F  ++ +  + +  N++ 
Sbjct: 94  -ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 28/143 (19%), Positives = 65/143 (45%), Gaps = 9/143 (6%)

Query: 578 IPSEIGKLSSLIKLILRRNQLFGQLPSE--LGSLIQLEYLDLSSNRLSNSIPRSLGNLVK 635
           IP  I       +L L  N+    L +      L QL  ++ S+N++++    +      
Sbjct: 26  IPEHIP--QYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 636 LHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLGKEIPSQI-CNMRSLEMLNLSHNN 693
           ++ + L++N+ ++ +  K+ + L  L  L L  N +   + +     + S+ +L+L  N 
Sbjct: 83  VNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQ 140

Query: 694 LSDFIPRCFEEMNGLLYIDISYN 716
           ++   P  F+ ++ L  +++  N
Sbjct: 141 ITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 33/162 (20%)

Query: 490 TNLIRLRLNRNHLTC-NISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVN 548
                LRLN N  T    +  F   P+L  I+ S+N                        
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK----------------------- 68

Query: 549 NIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSEL 606
             I  +     +  S ++ I L++N +   +  ++   L SL  L+LR N++   + ++ 
Sbjct: 69  --ITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRI-TCVGNDS 124

Query: 607 -GSLIQLEYLDLSSNRLSNSIPR-SLGNLVKLHYLNLSTNQF 646
              L  +  L L  N+++ ++   +   L  L  LNL  N F
Sbjct: 125 FIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 78.3 bits (192), Expect = 4e-15
 Identities = 47/302 (15%), Positives = 97/302 (32%), Gaps = 22/302 (7%)

Query: 444 HMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLT 503
             TLL + D A   V         + + + L D         L   T  +    + +   
Sbjct: 271 MGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKE 330

Query: 504 CNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQ 563
           C + +         +   S  +          +   +   ++     +  L PE      
Sbjct: 331 CVLLK----DRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL 386

Query: 564 LHVIDLSANHIIGKIPSEIGKLSSLIKLI--------LRRNQLFGQLPSELGSLIQLEYL 615
             ++ + A   +      +   S+L  +           R++   +          +  L
Sbjct: 387 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446

Query: 616 DLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIP 675
            L+   L+      L  L+ + +L+LS N+ ++ +P  L  L  L  L  S N L + + 
Sbjct: 447 HLAHKDLTV--LCHLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNAL-ENVD 502

Query: 676 SQICNMRSLEMLNLSHNNLSDF-IPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALME 734
             + N+  L+ L L +N L      +       L+ +++  N     +       + L E
Sbjct: 503 G-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN----SLCQEEGIQERLAE 557

Query: 735 AL 736
            L
Sbjct: 558 ML 559

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 77.1 bits (189), Expect = 9e-15
 Identities = 39/219 (17%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 172 PHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSS 231
             +      L    L+       +   L +   L  L   N     +I   +  L  L  
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400

Query: 232 LALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSI-----PSEIGNLKSLSILELGENR 286
                             L  +D +         S               + +L L    
Sbjct: 401 EKETLQYFS--------TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD 452

Query: 287 LNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNL 346
           L   +   L  L  +  L L  N L  ++P  +  L+ L  L+ +DN L  ++   + NL
Sbjct: 453 LT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL-ENVDG-VANL 507

Query: 347 TNLAAFYLYKNSLSG-SIPSEIGNLKSLSNLDLSENKLS 384
             L    L  N L   +    + +   L  L+L  N L 
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 73.6 bits (180), Expect = 1e-13
 Identities = 45/298 (15%), Positives = 87/298 (29%), Gaps = 43/298 (14%)

Query: 374 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 433
                  ++L       +   ++     +          R+    + LF  +L   K + 
Sbjct: 304 LPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST- 362

Query: 434 SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLI 493
                   L     L   +      +   +  +  L  L      LQ        L  + 
Sbjct: 363 ---VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ----YFSTLKAVD 415

Query: 494 RLRL-----NRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVN 548
            +R       R+      S     +  +  + L+H +                       
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL---------------------- 453

Query: 549 NIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGS 608
               ++   +     +  +DLS N +   +P  +  L  L  L    N L  +    + +
Sbjct: 454 ----TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL--ENVDGVAN 506

Query: 609 LIQLEYLDLSSNRLSN-SIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDL 665
           L +L+ L L +NRL   +  + L +  +L  LNL  N   QE  I+      L  +  
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.9 bits (173), Expect = 9e-13
 Identities = 41/245 (16%), Positives = 78/245 (31%), Gaps = 35/245 (14%)

Query: 332 DNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSL 391
           +++L       +   ++     +           +    + L   +LS  K +  +   L
Sbjct: 310 NDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSEL 368

Query: 392 GNLTNLAILYLHSNTLLGSI---PREIGNLKSLFELQLGDNKLSNSISH----------- 437
            +   L  L   +   L +I    R +  L    E     + L                 
Sbjct: 369 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428

Query: 438 -------SLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLT 490
                         + +L L    L+ +    L  L+ +T L LS N+L+   P L  L 
Sbjct: 429 FLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPALAALR 486

Query: 491 NLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISS-----DWGKCPNLGTFDV 545
            L  L+ + N L  N+       P+L  + L +N    ++           CP L   ++
Sbjct: 487 CLEVLQASDNALE-NVDG-VANLPRLQELLLCNN----RLQQSAAIQPLVSCPRLVLLNL 540

Query: 546 SVNNI 550
             N++
Sbjct: 541 QGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.4 bits (169), Expect = 2e-12
 Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 7/176 (3%)

Query: 103 IGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHL 162
           I  +  L  L     +       +  +     +L    ++F           + +  LHL
Sbjct: 389 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL 448

Query: 163 FKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSE 222
               L+  +   +  L  +  L L+ N L+ ++PP+L  L  L +L   +N+L  ++   
Sbjct: 449 AHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-G 503

Query: 223 IGNLKSLSSLALGNNKLCG-SIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSL 277
           + NL  L  L L NN+L   +    L +   L  L L+ NS           L  +
Sbjct: 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEM 558

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 44/136 (32%), Positives = 60/136 (44%), Gaps = 11/136 (8%)

Query: 299 TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS---SIPHYLGNLTNLAAFYLY 355
           TN   LYL+ N ++   P    +L +L  L L  N+L +    +   L  LT L    L 
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL---DLG 96

Query: 356 KNSLSGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPRE 414
            N L+  +PS +   L  L  L +  NKL+  +P  +  LT+L  L L  N  L SIP  
Sbjct: 97  TNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ-LKSIPHG 153

Query: 415 I-GNLKSLFELQLGDN 429
               L SL    L  N
Sbjct: 154 AFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 70.5 bits (173), Expect = 9e-14
 Identities = 51/144 (35%), Positives = 72/144 (50%), Gaps = 11/144 (7%)

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP--LFLGNLT 251
           S+P   G  TN  ILYLH+N ++   P    +L +L  L LG+N+L G++P  +F  +LT
Sbjct: 33  SVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVF-DSLT 88

Query: 252 NLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNS 310
            L  L L  N   + +PS +   L  L  L +  N+L   +P  +  LT+L  L L  N 
Sbjct: 89  QLTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146

Query: 311 LSGSIPSEI-GNLKSLSGLELADN 333
           L  SIP      L SL+   L  N
Sbjct: 147 LK-SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 65.1 bits (159), Expect = 6e-12
 Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 5/128 (3%)

Query: 353 YLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSI 411
           YL+ N ++   P    +L +L  L L  N+L  ++P  +  +LT L +L L +N L   +
Sbjct: 46  YLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-VL 103

Query: 412 PREI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLT 470
           P  +   L  L EL +  NKL+  +   +  LTH+T LAL  N L  +       L  LT
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162

Query: 471 MLTLSDNQ 478
              L  N 
Sbjct: 163 HAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 65.1 bits (159), Expect = 7e-12
 Identities = 43/131 (32%), Positives = 58/131 (44%), Gaps = 7/131 (5%)

Query: 110 KYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLS 168
           + L L  N  +   P    +L  LK LYL +NQ    +P  +   L+ +  L L  NQL+
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 169 GPIPHEV-GGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEI-GNL 226
             +P  V   L  L EL +  N L   +P  +  LT+L  L L  N L  SIP      L
Sbjct: 102 V-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRL 158

Query: 227 KSLSSLALGNN 237
            SL+   L  N
Sbjct: 159 SSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 5/125 (4%)

Query: 91  NVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPP 149
           + NQI  + P    ++  LK L L SN     +P  +  +L+ L  L L  NQ +  +P 
Sbjct: 48  HDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-VLPS 105

Query: 150 QI-GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAIL 208
            +   L +++ L +  N+L+  +P  +  L+ L  LAL  N LK     +   L++L   
Sbjct: 106 AVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164

Query: 209 YLHNN 213
           YL  N
Sbjct: 165 YLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 7/119 (5%)

Query: 578 IPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSL-GNLVKL 636
           +P+ I   ++   L L  NQ+    P    SLI L+ L L SN+L  ++P  +  +L +L
Sbjct: 34  VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQL 90

Query: 637 HYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNL 694
             L+L TNQ +  +P  + ++L+HL EL +  N L  E+P  I  +  L  L L  N L
Sbjct: 91  TVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 39/178 (21%), Positives = 59/178 (33%), Gaps = 54/178 (30%)

Query: 446 TLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLT 503
            +L L+DN ++ + P    +L+ L  L L  NQL  ++P     +LT L  L L  N LT
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 504 CNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-S 562
                                                             LP  + D   
Sbjct: 102 -------------------------------------------------VLPSAVFDRLV 112

Query: 563 QLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSN 620
            L  + +  N  + ++P  I +L+ L  L L +NQL          L  L +  L  N
Sbjct: 113 HLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 42/176 (23%), Positives = 62/176 (35%), Gaps = 56/176 (31%)

Query: 490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 549
           TN   L L+ N +T      F     L  + L                          +N
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLG-------------------------SN 74

Query: 550 IIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL-GS 608
            +G+LP  + D                        L+ L  L L  NQL   LPS +   
Sbjct: 75  QLGALPVGVFD-----------------------SLTQLTVLDLGTNQL-TVLPSAVFDR 110

Query: 609 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPI----KLEKLIHL 660
           L+ L+ L +  N+L+  +PR +  L  L +L L  NQ ++ IP     +L  L H 
Sbjct: 111 LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHA 164

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 613 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLG 671
           + L L  N+++   P    +L+ L  L L +NQ +  +P+ + + L  L+ LDL  N L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQL- 100

Query: 672 KEIPSQICN-MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
             +PS + + +  L+ L +  N L++ +PR  E +  L ++ +  N+L
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQL 147

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 74.0 bits (182), Expect = 5e-14
 Identities = 63/419 (15%), Positives = 115/419 (27%), Gaps = 90/419 (21%)

Query: 371 KSLSNLDLSENKLSG----SIPHSLGNLTNLAILYLHSNTL----LGSIPREIGNLKSLF 422
            S+    L  + ++     S+   L    ++  + L  NT+       +   I + K L 
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 423 ELQLGDNKLSN----------SISHSLGNLTHMTLLALYDNALS--GVIP--EELGNLVK 468
             +  D                +  +L     +  + L DNA       P  + L     
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 469 LTMLTLSDNQL--------------QGSIPNLRNLTNLIRLRLNRNHLT----CNISESF 510
           L  L L +N L                     +N   L  +   RN L        +++F
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 511 GIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLS 570
             H  L  + +  N                      + +++      +    +L V+DL 
Sbjct: 184 QSHRLLHTVKMVQNGIR----------------PEGIEHLLLEG---LAYCQELKVLDLQ 224

Query: 571 ANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSN----SI 626
            N       + +G  SS + + L+                 L  L L+   LS     ++
Sbjct: 225 DNTF-----THLG--SSALAIALKSWP-------------NLRELGLNDCLLSARGAAAV 264

Query: 627 PRSLGNLV--KLHYLNLSTNQFIQEIPIKL-----EKLIHLSELDLSHNFLGKEIPSQIC 679
             +   L    L  L L  N+   +    L     EK+  L  L+L+ N   +E      
Sbjct: 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDE 324

Query: 680 NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQG 738
                        +  D +    +E       +                   L + L  
Sbjct: 325 IREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKELADELSK 383

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.7 bits (171), Expect = 9e-13
 Identities = 49/316 (15%), Positives = 96/316 (30%), Gaps = 65/316 (20%)

Query: 469 LTMLTLSDNQL-----QGSIPNLRNLTNLIRLRLNRNHLTCN----ISESFGIHPKLTFI 519
           +   +L  + +     +     L    ++  + L+ N +       +SE+      L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 520 DLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHI----I 575
           + S + F G++  +  +              +  L   +    +LH + LS N       
Sbjct: 66  EFS-DIFTGRVKDEIPEA-------------LRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111

Query: 576 GKIPSEIGKLSSLIKLILRRNQL-------------FGQLPSELGSLIQLEYLDLSSNRL 622
             +   + K + L  L L  N L                +  +  +   L  +    NRL
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171

Query: 623 SN----SIPRSLGNLVKLHYLNLSTNQFIQE-----IPIKLEKLIHLSELDLSHNFLG-- 671
            N       ++  +   LH + +  N    E     +   L     L  LDL  N     
Sbjct: 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231

Query: 672 --KEIPSQICNMRSLEMLNLSHNNLSD----FIPRCFEEMN--GLLYIDISYNELHGPIP 723
               +   + +  +L  L L+   LS      +   F ++   GL  + + YNE+     
Sbjct: 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI----- 286

Query: 724 NSTAFSDALMEALQGN 739
                   L   +   
Sbjct: 287 -ELDAVRTLKTVIDEK 301

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 68.2 bits (167), Expect = 4e-12
 Identities = 56/383 (14%), Positives = 112/383 (29%), Gaps = 80/383 (20%)

Query: 323 KSLSGLELADNELSS----SIPHYLGNLTNLAAFYLYKNSLSG----SIPSEIGNLKSLS 374
            S+ G  L  + +++    S+   L    ++    L  N++       +   I + K L 
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 375 NLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN- 433
             + S+             L  L               + +     L  ++L DN     
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLL--------------QALLKCPKLHTVRLSDNAFGPT 109

Query: 434 ---SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLT 490
               +   L   T +  L L++N L      ++          L +  +       +N  
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR-------ALQELAVNK---KAKNAP 159

Query: 491 NLIRLRLNRNHLT----CNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVS 546
            L  +   RN L        +++F  H  L  + +  N                      
Sbjct: 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR----------------PEG 203

Query: 547 VNNIIGSLPPEIGDSSQLHVIDLSANHI----IGKIPSEIGKLSSLIKLILRRNQLFGQL 602
           + +++      +    +L V+DL  N         +   +    +L +L L    L  + 
Sbjct: 204 IEHLLLEG---LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260

Query: 603 PSELGSLIQ------LEYLDLSSNRLSNSIPRSLG-----NLVKLHYLNLSTNQF----- 646
            + +           L+ L L  N +     R+L       +  L +L L+ N+F     
Sbjct: 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320

Query: 647 -IQEIPIKLEKLIHLSELDLSHN 668
            + EI             +L   
Sbjct: 321 VVDEIREVFSTRGRGELDELDDM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 46/331 (13%), Positives = 95/331 (28%), Gaps = 64/331 (19%)

Query: 103 IGNISKLKYLDLSSNSFSG----TIPPQIGNLSMLKFLYLSANQFSGR----IPPQIGHL 154
           +   S ++   L  ++ +     ++   +     +K + LS N         +   I   
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 155 SYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNS 214
             +E                   L  L +              +L     L  + L +N+
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQ--------------ALLKCPKLHTVRLSDNA 105

Query: 215 LSGSIPSEIGNL----KSLSSLALGNNKL-------------CGSIPLFLGNLTNLDTLY 257
              +    + +       L  L L NN L               ++     N   L ++ 
Sbjct: 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165

Query: 258 LRNNSFS----SSIPSEIGNLKSLSILELGENRLN-----GSIPLSLGNLTNLDTLYLYT 308
              N               + + L  +++ +N +        +   L     L  L L  
Sbjct: 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 225

Query: 309 NSLSG----SIPSEIGNLKSLSGLELADNELSS----SIPHYLGNLTN--LAAFYLYKNS 358
           N+ +     ++   + +  +L  L L D  LS+    ++      L N  L    L  N 
Sbjct: 226 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285

Query: 359 LSGSIPSEIG-----NLKSLSNLDLSENKLS 384
           +       +       +  L  L+L+ N+ S
Sbjct: 286 IELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.3 bits (123), Expect = 8e-07
 Identities = 27/191 (14%), Positives = 52/191 (27%), Gaps = 41/191 (21%)

Query: 587 SLIKLILRRNQL----FGQLPSELGSLIQLEYLDLSSNRLSN----SIPRSLGNLVKLHY 638
           S+    L+ + +       + + L     ++ + LS N +       +  ++ +   L  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 639 LNLSTNQF----------IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC----NMRSL 684
              S              ++ +   L K   L  + LS N  G      +         L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 685 EMLNLSHNNLSD-------------FIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDA 731
           E L L +N L                + +  +    L  I    N L             
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL------ENGSMKE 178

Query: 732 LMEALQGNEGL 742
             +  Q +  L
Sbjct: 179 WAKTFQSHRLL 189

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 45/134 (33%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 299 TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS 358
                L L TNSL          L SL+ L L  N+L S        LT+L    L  N 
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 359 LSGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREI- 415
           L  S+P+ +   L  L  L L+ N+L  S+P  +   LT L  L L+ N  L S+P  + 
Sbjct: 88  LQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVF 144

Query: 416 GNLKSLFELQLGDN 429
             L SL  + L DN
Sbjct: 145 DRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 47/142 (33%), Positives = 65/142 (45%), Gaps = 7/142 (4%)

Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGN-LKS 420
           S+P+ I      + LDL  N L          LT+L  LYL  N  L S+P  + N L S
Sbjct: 21  SVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTS 77

Query: 421 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 480
           L  L L  N+L +  +     LT +  LAL  N L  +       L +L  L L  NQL+
Sbjct: 78  LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

Query: 481 GSIPN--LRNLTNLIRLRLNRN 500
            S+P+     LT+L  + L+ N
Sbjct: 138 -SVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 52/145 (35%), Positives = 66/145 (45%), Gaps = 12/145 (8%)

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP--LFLGNLT 251
           S+P   G       L L  NSL          L SL+ L LG NKL  S+P  +F   LT
Sbjct: 21  SVPT--GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVF-NKLT 76

Query: 252 NLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTN 309
           +L  L L  N    S+P+ +   L  L  L L  N+L  S+P  +   LT L  L LY N
Sbjct: 77  SLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQN 134

Query: 310 SLSGSIPSEI-GNLKSLSGLELADN 333
            L  S+P  +   L SL  + L DN
Sbjct: 135 QLK-SVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 8/132 (6%)

Query: 110 KYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLS 168
            YLDL +NS           L+ L  LYL  N+    +P  +   L+ +  L+L  NQL 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 169 GPIPHEV-GGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSLSGSIPSEI-GN 225
             +P+ V   L+ L ELAL +N L+ S+P  +   LT L  L L+ N L  S+P  +   
Sbjct: 90  S-LPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDR 146

Query: 226 LKSLSSLALGNN 237
           L SL  + L +N
Sbjct: 147 LTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 8/127 (6%)

Query: 91  NVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGN-LSMLKFLYLSANQFSGRIPP 149
             N +  +       ++ L  L L  N    ++P  + N L+ L +L LS NQ    +P 
Sbjct: 36  ETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-SLPN 93

Query: 150 QI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPP-SLGNLTNLA 206
            +   L+ ++ L L  NQL   +P  V   L+ L +L L  N LK S+P      LT+L 
Sbjct: 94  GVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQ 151

Query: 207 ILYLHNN 213
            ++LH+N
Sbjct: 152 YIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 35/98 (35%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 408 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLV 467
             S+P  I        L L  N L +  +     LT +T L L  N L  +       L 
Sbjct: 19  RTSVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76

Query: 468 KLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLT 503
            LT L LS NQLQ S+PN     LT L  L LN N L 
Sbjct: 77  SLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ 113

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 578 IPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLH 637
           +P+ I   +    L L  N L          L  L  L L  N+L +        L  L 
Sbjct: 22  VPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79

Query: 638 YLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLGKEIPSQICN-MRSLEMLNLSHNNL 694
           YLNLSTNQ +Q +P  + +KL  L EL L+ N L + +P  + + +  L+ L L  N L
Sbjct: 80  YLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 41/161 (25%), Positives = 61/161 (37%), Gaps = 32/161 (19%)

Query: 490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 549
                L L  N L    +  F     LT + L                           N
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLG-------------------------GN 62

Query: 550 IIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSEL- 606
            + SLP  + +  + L  ++LS N  +  +P+ +  KL+ L +L L  NQL   LP  + 
Sbjct: 63  KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQL-QSLPDGVF 120

Query: 607 GSLIQLEYLDLSSNRLSNSIPR-SLGNLVKLHYLNLSTNQF 646
             L QL+ L L  N+L  S+P      L  L Y+ L  N +
Sbjct: 121 DKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPW 160

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 4/108 (3%)

Query: 613 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLG 671
            YLDL +N L +        L  L  L L  N+ +Q +P  +  KL  L+ L+LS N L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQL- 88

Query: 672 KEIPSQICN-MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
           + +P+ + + +  L+ L L+ N L       F+++  L  + +  N+L
Sbjct: 89  QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 5/104 (4%)

Query: 136 LYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSI 195
           LYL  NQF+  +P ++ +  ++  + L  N++S         ++ L  L L+ N L+  I
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CI 93

Query: 196 PPSL-GNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNN 237
           PP     L +L +L LH N +S  +P     +L +LS LA+G N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 7/110 (6%)

Query: 203 TNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFL-GNLTNLDTLYLRNN 261
            ++  LYL  N  +  +P E+ N K L+ + L NN++  ++      N+T L TL L  N
Sbjct: 31  RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYN 88

Query: 262 SFSSSIPSEI-GNLKSLSILELGENRLNGSIPL-SLGNLTNLDTLYLYTN 309
                IP      LKSL +L L  N ++  +P  +  +L+ L  L +  N
Sbjct: 89  RL-RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 37/106 (34%), Positives = 49/106 (46%), Gaps = 11/106 (10%)

Query: 353 YLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIP 412
           YL  N  +  +P E+ N K L+ +DLS N++S     S  N+T L  L L  N  L  IP
Sbjct: 37  YLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIP 94

Query: 413 REI-GNLKSLFELQLGDNKLSNSISH----SLGNLTHMTLLALYDN 453
                 LKSL  L L  N +S  +       L  L+H   LA+  N
Sbjct: 95  PRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSH---LAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 266 SIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI-GNLKS 324
            +P  I   + ++ L L  N+    +P  L N  +L  + L  N +S ++ ++   N+  
Sbjct: 24  VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQ 79

Query: 325 LSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSEN 381
           L  L L+ N L    P     L +L    L+ N +S  +P     +L +LS+L +  N
Sbjct: 80  LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 404 SNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEEL 463
           SN  L  +P+ I   + + EL L  N+ +  +   L N  H+TL+ L +N +S +  +  
Sbjct: 18  SNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSF 74

Query: 464 GNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHL 502
            N+ +L  L LS N+L+  IP      L +L  L L+ N +
Sbjct: 75  SNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 590 KLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQE 649
           +L L  NQ    +P EL +   L  +DLS+NR+S    +S  N+ +L  L LS N+ ++ 
Sbjct: 35  ELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRC 92

Query: 650 IPIKL-EKLIHLSELDLSHNFLGKEIPSQI-CNMRSLEMLNLSHN 692
           IP +  + L  L  L L  N +   +P     ++ +L  L +  N
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 13/101 (12%)

Query: 446 TLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLT 503
           T L L  N  + ++P+EL N   LT++ LS+N++  ++ N    N+T L+ L L+ N L 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR 91

Query: 504 CNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFD 544
           C    +F     L  + L  N     IS      P  G F+
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGN----DISV----VPE-GAFN 123

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 61.6 bits (150), Expect = 6e-11
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%)

Query: 136 LYLSANQFSGRIPPQ--IGHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLK 192
           L L+ N+   RI      G L ++  L L +NQL+G I      G S + EL L  N +K
Sbjct: 34  LLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIK 91

Query: 193 GSIPPSL-GNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNN 237
             I   +   L  L  L L++N +S  +      +L SL+SL L +N
Sbjct: 92  -EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 158 EALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSL 215
             L L  N+L       + G L  L +L L  N L   I P+     +++  L L  N +
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90

Query: 216 SGSIPSEI-GNLKSLSSLALGNNKLCGSIP--LFLGNLTNLDTLYLRNNSF 263
              I +++   L  L +L L +N++   +    F  +L +L +L L +N F
Sbjct: 91  K-EISNKMFLGLHQLKTLNLYDNQI-SCVMPGSF-EHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 10/127 (7%)

Query: 211 HNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPL--FLGNLTNLDTLYLRNNSFSSSIP 268
               L   IP +I      + L L +N+L G I      G L +L  L L+ N  +   P
Sbjct: 16  TGRGLK-EIPRDIPL--HTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEP 71

Query: 269 SEIGNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLS 326
           +       +  L+LGEN++   I   +   L  L TL LY N +S  +      +L SL+
Sbjct: 72  NAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLT 129

Query: 327 GLELADN 333
            L LA N
Sbjct: 130 SLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 404 SNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSL-GNLTHMTLLALYDNALSGVIPEE 462
           +   L  IPR+I       EL L DN+L    S  L G L H+  L L  N L+G+ P  
Sbjct: 16  TGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA 73

Query: 463 LGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFID 520
                 +  L L +N+++  I N     L  L  L L  N ++C +  SF     LT ++
Sbjct: 74  FEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132

Query: 521 LSHN 524
           L+ N
Sbjct: 133 LASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 5/118 (4%)

Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREI-GNLK 419
            IP +I      + L L++N+L       L G L +L  L L  N L   I         
Sbjct: 22  EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGAS 78

Query: 420 SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 477
            + ELQLG+NK+    +     L  +  L LYDN +S V+P    +L  LT L L+ N
Sbjct: 79  HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 4/114 (3%)

Query: 395 TNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDN 453
            +   L L+ N L       + G L  L +L+L  N+L+    ++    +H+  L L +N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 454 ALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCN 505
            +  +  +    L +L  L L DNQ+   +      +L +L  L L  N   CN
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFNCN 141

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 11/113 (9%)

Query: 251 TNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYT 308
            +   L L +N         + G L  L  LEL  N+L   I  +     +++  L L  
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGE 87

Query: 309 NSLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYLG---NLTNLAAFYLYKN 357
           N +   I +++   L  L  L L DN++ S +    G   +L +L +  L  N
Sbjct: 88  NKIK-EISNKMFLGLHQLKTLNLYDNQI-SCVMP--GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 7/107 (6%)

Query: 590 KLILRRNQLFGQLPSE--LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFI 647
           +L+L  N+L G++ S+   G L  L  L+L  N+L+   P +      +  L L  N+ I
Sbjct: 33  ELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-I 90

Query: 648 QEIPIKL-EKLIHLSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSHN 692
           +EI  K+   L  L  L+L  N +   +      ++ SL  LNL+ N
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 265 SSIPSEIGNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTNSLSGSIPSEI-GNL 322
             IP +I      + L L +N L       L G L +L  L L  N L+  I        
Sbjct: 21  KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGA 77

Query: 323 KSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSEN 381
             +  L+L +N++          L  L    LY N +S  +      +L SL++L+L+ N
Sbjct: 78  SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 548 NNIIGSLPPE--IGDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPS 604
           +N +G +  +   G    L  ++L  N +   I        S + +L L  N++  ++ +
Sbjct: 38  DNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENKI-KEISN 95

Query: 605 EL-GSLIQLEYLDLSSNRLSNSIPR-SLGNLVKLHYLNLSTNQF 646
           ++   L QL+ L+L  N++S  +   S  +L  L  LNL++N F
Sbjct: 96  KMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 31/127 (24%)

Query: 91  NVNQIFGIIPPQI-GNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIP 148
           N N++  I    + G +  L  L+L  N  +  I P      S ++ L L  N+      
Sbjct: 37  NDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKE--- 92

Query: 149 PQIGHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPP-SLGNLTNLA 206
                                 I +++  GL  L  L L  N +   + P S  +L +L 
Sbjct: 93  ----------------------ISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLT 129

Query: 207 ILYLHNN 213
            L L +N
Sbjct: 130 SLNLASN 136

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 63.6 bits (154), Expect = 9e-11
 Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 23/125 (18%)

Query: 381 NKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLG 440
              +    H L    NL  LY+ +   L  +                           L 
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELR-----------------------DLR 53

Query: 441 NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRN 500
            L  +  L +  + L  V P+      +L+ L LS N L+          +L  L L+ N
Sbjct: 54  GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

Query: 501 HLTCN 505
            L C+
Sbjct: 114 PLHCS 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 61.3 bits (148), Expect = 5e-10
 Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 333 NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSE-IGNLKSLSNLDLSENKLSGSIPHSL 391
            + +    H+L    NL   Y+        +    +  L  L NL + ++ L    P + 
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 392 GNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKL 431
                L+ L L  N  L S+  +     SL EL L  N L
Sbjct: 77  HFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.5 bits (146), Expect = 8e-10
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 4/97 (4%)

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSE-IGNLKSLSSLALGNNKLCGSIPLF-LGNLT 251
                L    NL  LY+ N      +    +  L  L +L +  + L   +         
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTP 80

Query: 252 NLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN 288
            L  L L  N+   S+  +     SL  L L  N L+
Sbjct: 81  RLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.1 bits (145), Expect = 1e-09
 Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 7/130 (5%)

Query: 578 IPSEIGKLSSLIKLILRRNQLFGQLPSE-LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKL 636
               +    +L +L +   Q    L    L  L +L  L +  + L    P +     +L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 637 HYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD 696
             LNLS N  ++ +  K  + + L EL LS N L        C +R L+           
Sbjct: 83  SRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL-----HCSCALRWLQRWEEEGLGGVP 136

Query: 697 FIPRCFEEMN 706
                     
Sbjct: 137 EQKLQCHGQG 146

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.2 bits (140), Expect = 4e-09
 Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 2/101 (1%)

Query: 236 NNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSE-IGNLKSLSILELGENRLNGSIPLS 294
                      L    NL  LY+ N      +    +  L  L  L + ++ L    P +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 295 LGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNEL 335
                 L  L L  N+L  S+  +     SL  L L+ N L
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 22/100 (22%), Positives = 31/100 (31%), Gaps = 2/100 (2%)

Query: 285 NRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSE-IGNLKSLSGLELADNELSSSIPHYL 343
                     L    NL  LY+        +    +  L  L  L +  + L    P   
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 344 GNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKL 383
                L+   L  N+L  S+  +     SL  L LS N L
Sbjct: 77  HFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.5 bits (133), Expect = 3e-08
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 553 SLPPEIGDSSQLHVIDLSANHIIGKIPSE-IGKLSSLIKLILRRNQLFGQLPSELGSLIQ 611
                +  +  L  + +     +  +    +  L  L  L + ++ L    P       +
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 612 LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQF 646
           L  L+LS N L  S+       + L  L LS N  
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.5 bits (133), Expect = 3e-08
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 122 TIPPQIGNLSMLKFLYLSANQFSGRIPPQ-IGHLSYIEALHLFKNQLSGPIPHEVGGLSS 180
                +     L  LY+   Q    +  + +  L  +  L + K+ L    P        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 181 LNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSL 215
           L+ L L+ N L+ S+        +L  L L  N L
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.5 bits (133), Expect = 3e-08
 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 308 TNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHY-LGNLTNLAAFYLYKNSLSGSIPSE 366
           T   +      +   ++L+ L + + +    +    L  L  L    + K+ L   +  +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 367 I-GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL 407
                  LS L+LS N L  S+        +L  L L  N L
Sbjct: 75  AFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 649 EIPIKLEKLIHLSELDLSHNFLGKEIPSQ-ICNMRSLEMLNLSHNNLSDFIPRCFEEMNG 707
           +    L    +L+EL + +    + +  + +  +  L  L +  + L    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 708 LLYIDISYNELHGPIPNSTAFSDALME-ALQGNEGLC 743
           L  +++S+N L   +   T    +L E  L GN   C
Sbjct: 82  LSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 3e-07
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 4/102 (3%)

Query: 212 NNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLF-LGNLTNLDTLYLRNNSFSSSIPSE 270
               +      +   ++L+ L + N +    + L  L  L  L  L +  +     +  +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPD 74

Query: 271 I-GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL 311
                  LS L L  N L  S+        +L  L L  N L
Sbjct: 75  AFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 3e-07
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 99  IPPQIGNISKLKYLDLSSNSFSGTIPPQ-IGNLSMLKFLYLSANQFSGRIPPQI-GHLSY 156
               +     L  L + +      +  + +  L  L+ L +  +     + P        
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 157 IEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFL 191
           +  L+L  N L   +  +     SL EL L+ N L
Sbjct: 82  LSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 6e-04
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 475 SDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNI-SESFGIHPKLTFIDLSHNNFYGQISSD 533
           + +    S+ +L    NL  L +       ++         +L  + +  +     ++ D
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPD 74

Query: 534 -WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHI 574
            +   P L   ++S  N + SL  +      L  + LS N +
Sbjct: 75  AFHFTPRLSRLNLS-FNALESLSWKTVQGLSLQELVLSGNPL 115

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 71/485 (14%), Positives = 152/485 (31%), Gaps = 56/485 (11%)

Query: 255 TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGS 314
           T+ L   +    +     NL+SL         L G    ++ NL   +     T  ++  
Sbjct: 56  TMALCYTATPDRLSRRFPNLRSLK--------LKGKPRAAMFNLIPENWGGYVTPWVT-E 106

Query: 315 IPSEIGNLKSL--SGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKS 372
           I + +  LKS+    + ++D +L         +L  L        +  G + S + + + 
Sbjct: 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDG-LLSIVTHCRK 165

Query: 373 LSNLDLSENKLSGSIPHSLG----NLTNLAILYLHSNTLLG----SIPREIGNLKSLFEL 424
           +  L + E+  S      L     + T+L +L  +           +     N +SL  +
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225

Query: 425 QLGDNKLSN--SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGS 482
           ++GD ++        +  NL      +L ++         L    KL  L LS       
Sbjct: 226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM 285

Query: 483 IPNLRNLTNLIRLRLNR-NHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLG 541
                    + +L L      T +        P L  ++  +      +      C  L 
Sbjct: 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345

Query: 542 TFDVSVNNIIGSLPPE---IGDSS---------QLHVIDLSANHI----IGKIPSEIGKL 585
              +        +  E   +             +L  + +  + I    +  I + +  L
Sbjct: 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNL 405

Query: 586 SSLIKLILRRNQLFGQLPSELG------SLIQLEYLDLSSN--RLSNSIPRSLG-NLVKL 636
                ++L R +    LP + G         +L           L++     +G     +
Sbjct: 406 CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV 465

Query: 637 HYLNLS----TNQFIQEIPIKLEKLIHLSELDLSHNFLG-KEIPSQICNMRSLEMLNLSH 691
            ++ L     +++ + E         +L +L++       + I + +  + SL  L +  
Sbjct: 466 RWMLLGYVGESDEGLMEF---SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522

Query: 692 NNLSD 696
              S 
Sbjct: 523 YRASM 527

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 2e-10
 Identities = 97/680 (14%), Positives = 186/680 (27%), Gaps = 237/680 (34%)

Query: 23  VLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVG 82
           V D P  + S   EE+  ++      ++   G+L   WTL +  +               
Sbjct: 38  VQDMPKSILSK--EEIDHIIM----SKDAVSGTLRLFWTLLSKQE--------------- 76

Query: 83  RVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLS-AN 141
                    + Q F      +  + ++ Y                      KFL      
Sbjct: 77  --------EMVQKF------VEEVLRINY----------------------KFLMSPIKT 100

Query: 142 QFSGRIPPQIGHLSYIEALH----LFKNQLSGPIPHEVGGL-SSLNELALTSNFL----K 192
           +          ++   + L+    +F  + +         L  +L EL    N L     
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFA-KYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159

Query: 193 GSIPPSLGNLTNLAILYLHNNSLSGSIPSEI-----GNLKSLSSLALGNNKLCGSIPLFL 247
           GS     G  T +A+    +  +   +  +I      N  S  ++     KL        
Sbjct: 160 GS-----GK-TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL------- 206

Query: 248 GNLTNLDTLYLRNNSFSSSIPSEIGNLKS-LSILELGENRLNGSIPLSLGNLTNLDTL-- 304
                +D  +   +  SS+I   I ++++ L  L L        + L L N+ N      
Sbjct: 207 ---YQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCL-LVLLNVQNAKAWNA 261

Query: 305 ------YLYT-------NSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAA 351
                  L T       + LS +  + I        L   + +             +L  
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-------------SLLL 308

Query: 352 FYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSI 411
            YL                      DL    L+ + P          +           I
Sbjct: 309 KYL-----------------DCRPQDLPREVLTTN-P--------RRL---------SII 333

Query: 412 PREIGNLKSLFE--LQLGDNKLSNSISHSLGNLTHMTLLALYDNALS----GV-IPEE-- 462
              I +  + ++    +  +KL+  I  SL  L       ++D  LS       IP    
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSVFPPSAHIPTILL 392

Query: 463 ---------------LGNLVKLTMLTLSDNQLQGSIPNL-----RNLTNLIRL------- 495
                          +  L K +++     +   SIP++       L N   L       
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

Query: 496 -RLNRN---------------------HL-TCNISESFGIHPKLTFIDLSHNNFYGQISS 532
             + +                      HL      E   +   + F+D     F  Q   
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-FLDF---RFLEQ--- 505

Query: 533 DWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLI 592
              K  +  T      N  GS+   +        +     +I    P     +++++  +
Sbjct: 506 ---KIRHDST----AWNASGSILNTLQQ------LKFYKPYICDNDPKYERLVNAILDFL 552

Query: 593 LRRNQLFGQLPSELGSLIQL 612
            +  +    + S+   L+++
Sbjct: 553 PKIEENL--ICSKYTDLLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 5e-10
 Identities = 69/523 (13%), Positives = 145/523 (27%), Gaps = 170/523 (32%)

Query: 410 SIPRE--IGNLKS-LFELQLGDNKLSNSISHSLGNL--THMTLLALYDNAL-----SGV- 458
           ++ R      L+  L EL+   N     +   +     T + L       +       + 
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKN----VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 459 ------------IPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNR-----NH 501
                       + E L  L  L  +  +         N++   + I+  L R      +
Sbjct: 186 WLNLKNCNSPETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 502 LTC----------NISESFGIHPK--LTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 549
             C              +F +  K  LT       +F               T  +S+++
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS----------AATTTHISLDH 293

Query: 550 IIGSLPPEIGDSSQLHVIDLS--ANHIIGKIPSEIGKLSSL-IKLILRRNQLFGQLPSEL 606
              +L P+  +   L    L    +     +P E+   +   + +I        +   + 
Sbjct: 294 HSMTLTPD--EVKSL----LLKYLDCRPQDLPREVLTTNPRRLSII-------AESIRDG 340

Query: 607 GSLIQLEYLDLSSNRLSNSIPRSLGNL----VKLHYLNLSTNQFIQEIPIKLEKLIHL-S 661
            +     +  ++ ++L+  I  SL  L     +  +  LS   F     I    L  +  
Sbjct: 341 LATWD-NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLSLIWF 397

Query: 662 ELDLSHNFLGKEIPSQICN-MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHG 720
           ++        K     + N +    ++       +  IP         +Y++     L  
Sbjct: 398 DVI-------KSDVMVVVNKLHKYSLVEKQPKESTISIP--------SIYLE-----LKV 437

Query: 721 PIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVVIVFPLLG---TV 777
            + N  A   ++++     +    D              P   + +    +  +G     
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSD----------DLIPPYLDQYF----YSHIGHHLKN 483

Query: 778 ALLISLIALF------FIFRRRK---------------NALQTLQ--------SSPRGTR 808
                 + LF      F F  +K               N LQ L+        + P+  R
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543

Query: 809 GFLSVLTF-----------------------EGKIVYEEIIRQ 828
              ++L F                       E + ++EE  +Q
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-04
 Identities = 51/351 (14%), Positives = 103/351 (29%), Gaps = 93/351 (26%)

Query: 586 SSLIKLILRRNQLFGQLPSELGSLIQLEYLDL--------SSNRLSNSIPRSLGNLVKL- 636
               K  + R Q + +L   L  L   + + +        +   ++  +  S     K+ 
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW--VALDVCLSYKVQCKMD 181

Query: 637 ---HYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLE------ML 687
               +LNL      + +   L+KL++  ++D +         +    + S++      + 
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLY--QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 688 NLSHNN----LSD---------FIPRC-----------FEEMNGLLYIDISYNELHGPIP 723
           +  + N    L +         F   C            + ++      IS +     + 
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 724 NSTA---FSDAL--------MEALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVVIVFP 772
                      L         E L  N      I        S     A+   W  +   
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII------AESIRDGLATWDNWKHVNCD 353

Query: 773 LLGTVALLISLIAL-----------FFIFRRRKNALQTLQSSPRGTRGFLSVLTFEGKIV 821
            L T+ +  SL  L             +F    +A              LS++ F+  ++
Sbjct: 354 KLTTI-IESSLNVLEPAEYRKMFDRLSVF--PPSAHIPTIL--------LSLIWFD--VI 400

Query: 822 YEEIIRQRMV--LMMSTALEKVDKEVYTKL--IYLLEKSLQSRNFIRHSQV 868
             ++    +V  L   + +EK  KE    +  IYL  K      +  H  +
Sbjct: 401 KSDV--MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 18/157 (11%)

Query: 376 LDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSI 435
           L      +   +  +L  L     L L +N  +  I   +  +++L  L LG N +   I
Sbjct: 30  LHGMIPPIEK-MDATLSTLKACKHLALSTN-NIEKI-SSLSGMENLRILSLGRNLIK-KI 85

Query: 436 SHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ--GSIPNLRNLTNLI 493
            +       +  L +  N ++ +    +  LV L +L +S+N++   G I  L  L  L 
Sbjct: 86  ENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143

Query: 494 RLRLNRNHLTCNISESFGIH----------PKLTFID 520
            L L  N L  +  E+              P L  +D
Sbjct: 144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 162 LFKNQLSGPIPHEVGGLSSLNELALTSNFLK-GSIPPSLGNLTNLAILYLHNNSLSGSIP 220
             K+ +      +    +   ++ L         +  +L  L     L L  N++   I 
Sbjct: 6   TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI- 63

Query: 221 SEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSIL 280
           S +  +++L  L+LG N +   I         L+ L++  N  +S   S I  L +L +L
Sbjct: 64  SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS--LSGIEKLVNLRVL 120

Query: 281 ELGENRLNGSIPLS-LGNLTNLDTLYLYTN 309
            +  N++     +  L  L  L+ L L  N
Sbjct: 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 9/143 (6%)

Query: 557 EIGDSSQLHVIDLSANHI-IGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYL 615
           +   +++   ++L      I K+ + +  L +   L L  N +  +  S L  +  L  L
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKISSLSGMENLRIL 75

Query: 616 DLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLG--KE 673
            L  N +   I         L  L +S NQ I  +   +EKL++L  L +S+N +    E
Sbjct: 76  SLGRNLIK-KIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNNKITNWGE 132

Query: 674 IPSQICNMRSLEMLNLSHNNLSD 696
           I  ++  +  LE L L+ N L +
Sbjct: 133 I-DKLAALDKLEDLLLAGNPLYN 154

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 588 LIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFI 647
            ++L      +   + + L +L   ++L LS+N +   I  SL  +  L  L+L  N  I
Sbjct: 27  KVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNL-I 82

Query: 648 QEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDF 697
           ++I         L EL +S+N +     S I  + +L +L +S+N ++++
Sbjct: 83  KKIENLDAVADTLEELWISYNQIAS--LSGIEKLVNLRVLYMSNNKITNW 130

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 14/145 (9%)

Query: 269 SEIGNLKSLSILELGENRLNGS------IPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNL 322
                 KS+   E  +  L+G       +  +L  L     L L TN++   I S +  +
Sbjct: 12  RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGM 69

Query: 323 KSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENK 382
           ++L  L L  N +   I +       L   ++  N ++ S+ S I  L +L  L +S NK
Sbjct: 70  ENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNK 126

Query: 383 LS--GSIPHSLGNLTNLAILYLHSN 405
           ++  G I   L  L  L  L L  N
Sbjct: 127 ITNWGEIDK-LAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 99  IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIE 158
           +   +  +   K+L LS+N+    I   +  +  L+ L L  N    +I         +E
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLIK-KIENLDAVADTLE 96

Query: 159 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLK--GSIPPSLGNLTNLAILYLHNN 213
            L +  NQ++      +  L +L  L +++N +   G I   L  L  L  L L  N
Sbjct: 97  ELWISYNQIA--SLSGIEKLVNLRVLYMSNNKITNWGEIDK-LAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 39/192 (20%), Positives = 61/192 (31%), Gaps = 32/192 (16%)

Query: 445 MTLLALYDNALSGVIPEELGNLVKLTMLTL--SDNQLQGSIPNLRNLTNLIRLRLNRNHL 502
           M       +A+      +     +   + L      ++     L  L     L L+ N++
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60

Query: 503 TCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNI-----IGSLPPE 557
              I  S      L  + L  N    +I +       L    +S N I     I  L   
Sbjct: 61  E-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLV-- 115

Query: 558 IGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKL---ILRRNQLFGQLPSE--------- 605
                 L V+ +S N I      EI KL++L KL   +L  N L+               
Sbjct: 116 -----NLRVLYMSNNKI--TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168

Query: 606 -LGSLIQLEYLD 616
            +  L  L+ LD
Sbjct: 169 VVKRLPNLKKLD 180

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 58.4 bits (142), Expect = 6e-10
 Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 8/119 (6%)

Query: 314 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKS 372
           S+P+ I +  S + LEL  N+L S        LT L    L +N +  S+P  +   L  
Sbjct: 21  SVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTK 77

Query: 373 LSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDN 429
           L+ L L ENKL  S+P+ +   LT L  L L +N  L S+P  I   L SL ++ L  N
Sbjct: 78  LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKS 420
           S+P+ I +  S + L+L  NKL          LT L  L L  N +  S+P  +   L  
Sbjct: 21  SVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTK 77

Query: 421 LFELQLGDNKLSNSISHSL-GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 478
           L  L L +NKL  S+ + +   LT +  LAL  N L  V       L  L  + L  N 
Sbjct: 78  LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 55.0 bits (133), Expect = 8e-09
 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 251 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTN 309
           ++   L L +N   S        L  L+ L L +N++  S+P  +   LT L  LYL+ N
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHEN 86

Query: 310 SLSGSIPSEI-GNLKSLSGLELADNELSSSIPH-YLGNLTNLAAFYLYKN 357
            L  S+P+ +   L  L  L L  N+L  S+P      LT+L   +L+ N
Sbjct: 87  KLQ-SLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 424 LQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSI 483
           L+L  NKL +        LT +T L+L  N +  +       L KLT+L L +N+LQ S+
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SL 91

Query: 484 PN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHN 524
           PN     LT L  L L+ N L       F     L  I L  N
Sbjct: 92  PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 134 KFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLK 192
             L L +N+           L+ +  L L +NQ+   +P  V   L+ L  L L  N L+
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKLQ 89

Query: 193 GSIPPSL-GNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNN 237
            S+P  +   LT L  L L  N L  S+P  I   L SL  + L  N
Sbjct: 90  -SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 6/117 (5%)

Query: 578 IPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLH 637
           +P+ I   SS  +L L  N+L          L QL  L LS N++ +        L KL 
Sbjct: 22  VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79

Query: 638 YLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSHN 692
            L L  N+  Q +P  + +KL  L EL L  N L K +P  I   + SL+ + L  N
Sbjct: 80  ILYLHENKL-QSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 37/106 (34%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 184 LALTSNFLKGSIPPSL-GNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCG 241
           L L SN L+ S+P  +   LT L  L L  N +  S+P  +   L  L+ L L  NKL  
Sbjct: 33  LELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKL-Q 89

Query: 242 SIP--LFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285
           S+P  +F   LT L  L L  N   S        L SL  + L  N
Sbjct: 90  SLPNGVF-DKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 3/108 (2%)

Query: 395 TNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNA 454
           ++   L L SN L          L  L +L L  N++ +        LT +T+L L++N 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 455 LSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRN 500
           L  +       L +L  L L  NQL+ S+P+     LT+L ++ L+ N
Sbjct: 88  LQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 8/108 (7%)

Query: 110 KYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQL 167
             L+L SN    ++P  +   L+ L  L LS NQ    +P  +   L+ +  L+L +N+L
Sbjct: 31  TRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKL 88

Query: 168 SGPIPHEV-GGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNN 213
              +P+ V   L+ L ELAL +N LK S+P      LT+L  ++LH N
Sbjct: 89  QS-LPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 613 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLG 671
             L+L SN+L +        L +L  L+LS NQ IQ +P  + +KL  L+ L L  N L 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKL- 88

Query: 672 KEIPSQIC-NMRSLEMLNLSHNNL 694
           + +P+ +   +  L+ L L  N L
Sbjct: 89  QSLPNGVFDKLTQLKELALDTNQL 112

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 446 TLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLT 503
           T L L  N L  +       L +LT L+LS NQ+Q S+P+     LT L  L L+ N L 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ 89

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 72/538 (13%), Positives = 167/538 (31%), Gaps = 55/538 (10%)

Query: 201 NLTNLAILYLHNNSLSGSIPSEIGNL------------KSLSSLALGNNKLC-GSIPLFL 247
            + ++ +    + +    +P   G                L  + L    +    + L  
Sbjct: 67  KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA 126

Query: 248 GNLTNLDTLYLRN-NSFSSSIPSEIG-NLKSLSILELGENRLNG-------SIPLSLGNL 298
            +  N   L L +   FS+   + I    ++L  L+L E+ ++          P +  +L
Sbjct: 127 KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186

Query: 299 TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS 358
            +L+   L +     ++   +    +L  L+L        +   L     L        +
Sbjct: 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT 246

Query: 359 LSG------SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLG-SI 411
                     +   +   K L  L    + +   +P      + L  L L   T+    +
Sbjct: 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDL 306

Query: 412 PREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTM 471
            + +     L  L + D      +         +  L ++ +    + P        L  
Sbjct: 307 VKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366

Query: 472 LTLSDNQLQGSIPNLRNLTN--LIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQ 529
           +++   +L+  +   R +TN  LI +  NR ++T           +L  I+    ++   
Sbjct: 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMT---------RFRLCIIEPKAPDYLTL 417

Query: 530 ISSDWG------KCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIG 583
              D G       C +L    +S              + ++ ++ ++           + 
Sbjct: 418 EPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVL 477

Query: 584 K-LSSLIKLILRRNQLFGQ-LPSELGSLIQLEYLDLSSNRLSNSIPRSLGN---LVKLHY 638
               SL KL +R      + L +    L  +  L +SS  +S    + LG     + +  
Sbjct: 478 SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEV 537

Query: 639 LNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD 696
           ++       +     +E++     +         ++P  + NM     +  S   ++ 
Sbjct: 538 IDERGAPDSRPESCPVERVFIYRTVAGPR----FDMPGFVWNMDQDSTMRFSRQIITT 591

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.9 bits (132), Expect = 9e-08
 Identities = 68/490 (13%), Positives = 152/490 (31%), Gaps = 66/490 (13%)

Query: 255 TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTN----- 309
            +        +++      ++S+ +           +P   G         + ++     
Sbjct: 49  FIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLE 108

Query: 310 --SLSGSIPSEIG------NLKSLSGLELADNELSS-----SIPHYLGNLTNLAAFYLYK 356
              L   + ++        + K+   L L+  E  S     +I     NL  L       
Sbjct: 109 EIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDV 168

Query: 357 NSLSGSIPSEIG-NLKSLSNLDLS--ENKLS-GSIPHSLGNLTNLAILYLHSNTLLGSIP 412
           + +SG   S       SL +L++S   +++S  ++   +    NL  L L+    L  + 
Sbjct: 169 DDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA 228

Query: 413 REIGNLKSLFELQLG------DNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNL 466
             +     L EL  G         + + +S +L     +  L+ + +A+   +P      
Sbjct: 229 TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288

Query: 467 VKLTMLTLSDNQLQ--GSIPNLRNLTNLIRLRLNRNHLTCNISESFGIH-PKLTFIDLSH 523
            +LT L LS   +Q    +  L     L RL +  +++     E        L  + +  
Sbjct: 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV-LDYIEDAGLEVLASTCKDLRELRVFP 347

Query: 524 NNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIG 583
           +               L   +  + ++    P       +L  +      +       I 
Sbjct: 348 SE-----PFVMEPNVALT--EQGLVSVSMGCP-------KLESVLYFCRQMTNAALITIA 393

Query: 584 K-LSSLIKLILRRNQLFGQLPSELGSL-----------IQLEYLDLSSNRLSNSIPRSLG 631
           +   ++ +  L   +        L  L             L  L LS             
Sbjct: 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGT 453

Query: 632 NLVKLHYLNLS----TNQFIQEIPIKLEKLIHLSELDLSH-NFLGKEIPSQICNMRSLEM 686
              K+  L+++    ++  +  +   L     L +L++    F  K + +    + ++  
Sbjct: 454 YAKKMEMLSVAFAGDSDLGMHHV---LSGCDSLRKLEIRDCPFGDKALLANASKLETMRS 510

Query: 687 LNLSHNNLSD 696
           L +S  ++S 
Sbjct: 511 LWMSSCSVSF 520

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 66/462 (14%), Positives = 140/462 (30%), Gaps = 36/462 (7%)

Query: 77  HCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIG-NLSMLKF 135
              H    N +       ++  I     + + L+ + L     +      I  +    K 
Sbjct: 75  GKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKV 134

Query: 136 LYLSA-NQFSGRIPPQIG-HLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG 193
           L LS+   FS      I      ++ L L ++ +             L+           
Sbjct: 135 LVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV------SGHWLSHFP-------- 180

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 253
               +  +L +L I  L +     ++   +    +L SL L        +   L     L
Sbjct: 181 ---DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQL 237

Query: 254 DTLYLR------NNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYL- 306
           + L              S +   +   K L  L    + +   +P      + L TL L 
Sbjct: 238 EELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS 297

Query: 307 YTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSE 366
           Y    S  +   +     L  L + D    + +        +L    ++ +      P+ 
Sbjct: 298 YATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV 357

Query: 367 IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSN-TLLGSIPREIGNLKSLFELQ 425
               + L ++ +   KL  S+ +    +TN A++ +  N   +      +  ++      
Sbjct: 358 ALTEQGLVSVSMGCPKLE-SVLYFCRQMTNAALITIARNRPNMTRF--RLCIIEPKAPDY 414

Query: 426 LGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELG-NLVKLTMLTLSDNQL--QGS 482
           L    L       + +   +  L+L    L+  + E +G    K+ ML+++       G 
Sbjct: 415 LTLEPLDIGFGAIVEHCKDLRRLSL-SGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473

Query: 483 IPNLRNLTNLIRLRLNRNHLTCNISESFGIH-PKLTFIDLSH 523
              L    +L +L +           +       +  + +S 
Sbjct: 474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 49/401 (12%), Positives = 113/401 (28%), Gaps = 45/401 (11%)

Query: 177 GLSSLNELALT--SNFLKGSIPPSLGNLTNLAILYLHNNSLSG----SIPSEIGNLKSLS 230
              +   L L+    F    +        NL  L L  + +       +        SL 
Sbjct: 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187

Query: 231 SLALGNNKLC---GSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELG---- 283
           SL +          ++   +    NL +L L        + + +     L  L  G    
Sbjct: 188 SLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA 247

Query: 284 --ENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS-SIP 340
                +   + ++L     L  L  + +++   +P+       L+ L L+   + S  + 
Sbjct: 248 EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV 307

Query: 341 HYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAIL 400
             L     L   ++        +       K L  L +        +      LT   ++
Sbjct: 308 KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF--PSEPFVMEPNVALTEQGLV 365

Query: 401 YLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN----SISHSLGNLTHMTLLALYDNALS 456
            +                  L  +     +++N    +I+ +  N+T   L  +   A  
Sbjct: 366 SV------------SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413

Query: 457 GV--------IPEELGNLVKLTMLTLSDNQLQGSIPNL-RNLTNLIRLRLNRNHLTCN-I 506
            +            + +   L  L+LS          +      +  L +     +   +
Sbjct: 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473

Query: 507 SESFGIHPKLTFIDLSHNNFYGQ-ISSDWGKCPNLGTFDVS 546
                    L  +++    F  + + ++  K   + +  +S
Sbjct: 474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 62/355 (17%), Positives = 105/355 (29%), Gaps = 71/355 (20%)

Query: 369 NLKSLSNLDLSENKLSGSIPHSLG-----NLTNLAILYLHSNTLLGSIPREIG-----NL 418
               +++LDLS N L       L         ++  L L  N+L      E+        
Sbjct: 20  IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 419 KSLFELQLGDNKLSNSISHSLGNL-----THMTLLALYDNALSGVIPEELGNLVK----- 468
            ++  L L  N LS   S  L          +T+L L  N  S     E           
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 469 LTMLTLSDNQLQGS-----IPNLRNL-TNLIRLRLNRNHLTCN----ISESF-GIHPKLT 517
           +T L L  N L        I  L  +  N+  L L  N+L       +++    I   +T
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199

Query: 518 FIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGK 577
            +DLS N                     S   +           + +  ++L  N + G 
Sbjct: 200 SLDLSANLLG----------------LKSYAELAYIFS---SIPNHVVSLNLCLNCLHGP 240

Query: 578 IPSEIGKL----SSLIKLILRRNQL-------FGQLPSELGSLIQLEYLDLSSNRLSNSI 626
               +  L      L  + L  + +          L +   ++ ++  +D +   +  S 
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300

Query: 627 PRSLGNLVK-----LHYLNLSTNQFI-----QEIPIKLEKLIHLSELDLSHNFLG 671
              + NL++         +L     I     Q     L     L E   +   L 
Sbjct: 301 SIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 55/299 (18%), Positives = 101/299 (33%), Gaps = 61/299 (20%)

Query: 463 LGNLVKLTMLTLSDNQLQGS-----IPNLR-NLTNLIRLRLNRNHLTCNISESFG----- 511
                 +T L LS N L        I        ++  L L+ N L    S+        
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 512 IHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSA 571
           I   +T ++LS N                     S + ++ +L         + V+DL  
Sbjct: 78  IPANVTSLNLSGNFLS----------------YKSSDELVKTLA---AIPFTITVLDLGW 118

Query: 572 NHIIGKIPSEIGKL-----SSLIKLILRRNQLFGQLPSELGSLIQ-----LEYLDLSSNR 621
           N    K  SE  +      +S+  L LR N L  +   EL  ++      +  L+L  N 
Sbjct: 119 NDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178

Query: 622 LSNSIPRSLGNLVK-----LHYLNLSTNQF----IQEIPIKLEKL-IHLSELDLSHNFLG 671
           L++     L   +      +  L+LS N        E+      +  H+  L+L  N L 
Sbjct: 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238

Query: 672 KEIPSQICNM----RSLEMLNLSHNNLSDFIPRC-------FEEMNGLLYIDISYNELH 719
                 +  +    + L+ + L ++ + +            F  +  ++ +D +  E+H
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 55/327 (16%), Positives = 106/327 (32%), Gaps = 66/327 (20%)

Query: 417 NLKSLFELQLGDNKLSNSISHSLG-----NLTHMTLLALYDNALSGVIPEELGNLVK--- 468
               +  L L  N L +  +  L          +T L L  N+L     +EL  ++    
Sbjct: 20  IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 469 --LTMLTLSDNQL-QGSIPNL-----RNLTNLIRLRLNRNHLT----CNISESF-GIHPK 515
             +T L LS N L   S   L          +  L L  N  +        ++F  +   
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 516 LTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHII 575
           +T ++L  N+                    S + +I  L       + ++ ++L  N++ 
Sbjct: 140 ITSLNLRGNDLG----------------IKSSDELIQILA---AIPANVNSLNLRGNNLA 180

Query: 576 GKIPSEIGKL-----SSLIKLILRRNQLFGQLPSELGSLIQ-----LEYLDLSSNRLSNS 625
            K  +E+ K      +S+  L L  N L  +  +EL  +       +  L+L  N L   
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240

Query: 626 IPRSLGNLVK----LHYLNLSTNQF-------IQEIPIKLEKLIHLSELDLSHNFLGKEI 674
              +L  L      L  + L  +          + +      +  +  +D +   +    
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300

Query: 675 PSQICNM-----RSLEMLNLSHNNLSD 696
              I N+        ++ +L +  L  
Sbjct: 301 SIPISNLIRELSGKADVPSLLNQCLIF 327

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 59/341 (17%), Positives = 112/341 (32%), Gaps = 62/341 (18%)

Query: 199 LGNLTNLAILYLHNNSLSGSIPSEIG-----NLKSLSSLALGNNKL----CGSIPLFL-G 248
                 +  L L  N+L      E+         S++SL L  N L       +   L  
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 249 NLTNLDTLYLRNNSFSSSIPSEIGNL-----KSLSILELGENRL--NGSIPLS---LGNL 298
              N+ +L L  N  S     E+         ++++L+LG N      S           
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 299 TNLDTLYLYTNSLSGSIPSEIGNL-----KSLSGLELADN--------ELSSSIPHYLGN 345
            ++ +L L  N L      E+  +      +++ L L  N        EL+  +     +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 346 LTNLAAFYLYKNSLSGSIPSEIG-----NLKSLSNLDLSENKLSGS----IPHSLGNLTN 396
           +T+L    L  N L     +E+          + +L+L  N L G     +     +L +
Sbjct: 198 VTSL---DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254

Query: 397 LAILYLHSNTL-------LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNL-----TH 444
           L  +YL  + +         ++     N++ +  +     ++  S S  + NL       
Sbjct: 255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGK 314

Query: 445 MTLLALYDNALSGV-----IPEELGNLVKLTMLTLSDNQLQ 480
             + +L +  L          E+L    +L     +   L 
Sbjct: 315 ADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 53/276 (19%), Positives = 99/276 (35%), Gaps = 42/276 (15%)

Query: 506 ISESFGIHPKLTFIDLSHNNFYGQ----ISSDWGKCP-NLGTFDVSVNNIIGSLPPEIGD 560
           + E   I   +T +DLS NN Y      +   +   P ++ + ++S N++      E+  
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 561 -----SSQLHVIDLSANHIIGKIPSEIGKL-----SSLIKLILRRNQLFGQLPSELGSLI 610
                 + +  ++LS N +  K   E+ K       ++  L L  N    +  SE     
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 611 Q-----LEYLDLSSNRLSNSIPRSLGNLVK-----LHYLNLSTNQF----IQEIPIKLEK 656
                 +  L+L  N L       L  ++      ++ LNL  N        E+   L  
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 657 L-IHLSELDLSHNFLGKEIPSQIC-----NMRSLEMLNLSHNNLSD----FIPRCFEEMN 706
           +   ++ LDLS N LG +  +++          +  LNL  N L       +    + + 
Sbjct: 194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253

Query: 707 GLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGL 742
            L  + + Y+ +      S     AL  A    + +
Sbjct: 254 HLQTVYLDYDIVKNM---SKEQCKALGAAFPNIQKI 286

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 50/293 (17%), Positives = 100/293 (34%), Gaps = 46/293 (15%)

Query: 234 LGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIG-----NLKSLSILELGENRL- 287
           L  +     +  F      + +L L  N+  S    E+         S++ L L  N L 
Sbjct: 5   LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG 64

Query: 288 -NGSIPLS---LGNLTNLDTLYLYTNSLSGSIPSEIGNL-----KSLSGLELADNELSSS 338
              S  L         N+ +L L  N LS     E+         +++ L+L  N+ SS 
Sbjct: 65  FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124

Query: 339 IPHYLGNL-----TNLAAFYLYKNSLSGSIPSEIGNL-----KSLSNLDLSENKLS---- 384
                         ++ +  L  N L      E+  +      ++++L+L  N L+    
Sbjct: 125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC 184

Query: 385 GSIPHSLGNL-TNLAILYLHSNTLLGSIPREIG-----NLKSLFELQLGDNKLSNS---- 434
             +   L ++  ++  L L +N L      E+          +  L L  N L       
Sbjct: 185 AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN 244

Query: 435 ISHSLGNLTHMTLLALYDNALSGVIPEE-------LGNLVKLTMLTLSDNQLQ 480
           +     +L H+  + L  + +  +  E+         N+ K+ ++  +  ++ 
Sbjct: 245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 53/325 (16%), Positives = 99/325 (30%), Gaps = 65/325 (20%)

Query: 105 NISKLKYLDLSSNSFSGTIPPQIG-----NLSMLKFLYLSANQFSGRIPPQIGHL----- 154
             + +  L+LS NS       ++        + +  L LS N  S +   ++        
Sbjct: 49  TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIP 108

Query: 155 SYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNS 214
             I  L L  N  S          S   +                    ++  L L  N 
Sbjct: 109 FTITVLDLGWNDFSS------KSSSEFKQAFSNLP-------------ASITSLNLRGND 149

Query: 215 LSGSIPSEIGNL-----KSLSSLALGNNKL----CGSIPLFLGNL-TNLDTLYLRNNSFS 264
           L      E+  +      +++SL L  N L    C  +  FL ++  ++ +L L  N   
Sbjct: 150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209

Query: 265 SSIPSEIG-----NLKSLSILELGENRLNGS----IPLSLGNLTNLDTLYLYTNSLSG-- 313
               +E+          +  L L  N L+G     + L   +L +L T+YL  + +    
Sbjct: 210 LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMS 269

Query: 314 -----SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIG 368
                ++ +   N++ +  ++    E+  S    + NL    +      SL         
Sbjct: 270 KEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQ 329

Query: 369 ----------NLKSLSNLDLSENKL 383
                         L     +   L
Sbjct: 330 KHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 63/369 (17%), Positives = 117/369 (31%), Gaps = 80/369 (21%)

Query: 107 SKLKYLDLSSNSFSGTIPPQIG-----NLSMLKFLYLSANQFSGRIPPQIGHL-----SY 156
             +  LDLS N+       ++        + +  L LS N    +   ++  +     + 
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 157 IEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLS 216
           + +L+L  N LS            L +                     + +L L  N  S
Sbjct: 82  VTSLNLSGNFLS------YKSSDELVKTLAAIP-------------FTITVLDLGWNDFS 122

Query: 217 GSIPSEIGNL-----KSLSSLALGNNKLC--GSIPL---FLGNLTNLDTLYLRNNSFSSS 266
               SE          S++SL L  N L    S  L         N+++L LR N+ +S 
Sbjct: 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182

Query: 267 IPSEIGNL-----KSLSILELGENRLN--GSIPLS---LGNLTNLDTLYLYTNSLSGSIP 316
             +E+         S++ L+L  N L       L+        ++ +L L  N L G   
Sbjct: 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242

Query: 317 SEIGNL----KSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKS 372
             +  L    K L  + L  + +         N++      L          +   N++ 
Sbjct: 243 ENLKLLKDSLKHLQTVYLDYDIV--------KNMSKEQCKALG---------AAFPNIQK 285

Query: 373 LSNLDLSENKLSGSIPHSLGNL-----TNLAILYLHSNTLL-----GSIPREIGNLKSLF 422
           +  +D +  ++  S    + NL         +  L +  L+      +   ++     L 
Sbjct: 286 IILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELR 345

Query: 423 ELQLGDNKL 431
           E       L
Sbjct: 346 ESIQTCKPL 354

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 4/110 (3%)

Query: 178 LSSLNELALTSNFLK-GSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN 236
            +++ EL L +     G I        NL  L L N  L  S+ + +  L  L  L L  
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSE 80

Query: 237 NKLCGSIPLFLGNLTNLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGEN 285
           N++ G + +    L NL  L L  N     S    +  L+ L  L+L   
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 594 RRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK 653
              +L  + P+ +  L+    LD   +     I       V L +L+L     +  +   
Sbjct: 14  IHLELRNRTPAAVRELV----LDNCKSNDG-KIEGLTAEFVNLEFLSLINVG-LISVSN- 66

Query: 654 LEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDF 697
           L KL  L +L+LS N +   +      + +L  LNLS N L D 
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 4/111 (3%)

Query: 273 NLKSLSILELGENRLN-GSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELA 331
              ++  L L   + N G I        NL+ L L    L  S+ + +  L  L  LEL+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELS 79

Query: 332 DNELSSSIPHYLGNLTNLAAFYLYKNSLSG-SIPSEIGNLKSLSNLDLSEN 381
           +N +   +      L NL    L  N L   S    +  L+ L +LDL   
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 6/134 (4%)

Query: 372 SLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKL 431
             S +D+           +   +  L +    SN   G I        +L  L L +  L
Sbjct: 4   GSSGMDMKRRIHLELRNRTPAAVRELVLDNCKSN--DGKIEGLTAEFVNLEFLSLINVGL 61

Query: 432 SNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ--GSIPNLRNL 489
             S+S +L  L  +  L L +N + G +      L  LT L LS N+L+   ++  L+ L
Sbjct: 62  I-SVS-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKL 119

Query: 490 TNLIRLRLNRNHLT 503
             L  L L    +T
Sbjct: 120 ECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 457 GVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKL 516
           G I       V L  L+L +  L  S+ NL  L  L +L L+ N +   +       P L
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 517 TFIDLSHNNF 526
           T ++LS N  
Sbjct: 98  THLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 6/115 (5%)

Query: 105 NISKLKYLDLSSNSFS-GTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLF 163
             + ++ L L +   + G I         L+FL L        +   +  L  ++ L L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELS 79

Query: 164 KNQLSGPIPHEVGGLSSLNELALTSNFLK--GSIPPSLGNLTNLAILYLHNNSLS 216
           +N++ G +      L +L  L L+ N LK   ++ P L  L  L  L L N  ++
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 6/116 (5%)

Query: 321 NLKSLSGLELADNELS-SSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLS 379
              ++  L L + + +   I        NL    L    L  S+ + +  L  L  L+LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELS 79

Query: 380 ENKLSGSIPHSLGNLTNLAILYLHSNTL--LGSIPREIGNLKSLFELQLGDNKLSN 433
           EN++ G +      L NL  L L  N L  + ++   +  L+ L  L L + +++N
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVTN 134

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 632 NLVKLHYLNLSTNQF-IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLS 690
               +  L L   +    +I     + ++L  L L +  L     S +  +  L+ L LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELS 79

Query: 691 HNNLSDFIPRCFEEMNGLLYIDISYNEL 718
            N +   +    E++  L ++++S N+L
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 3/98 (3%)

Query: 548 NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELG 607
            +  G +     +   L  + L    +   + + + KL  L KL L  N++FG L     
Sbjct: 35  KSNDGKIEGLTAEFVNLEFLSLINVGL-ISVSN-LPKLPKLKKLELSENRIFGGLDMLAE 92

Query: 608 SLIQLEYLDLSSNRLSN-SIPRSLGNLVKLHYLNLSTN 644
            L  L +L+LS N+L + S    L  L  L  L+L   
Sbjct: 93  KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 17/94 (18%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 604 SELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSEL 663
           ++  + ++   LDL   ++   I      L +   ++ S N+ I+++      L  L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE-IRKLD-GFPLLRRLKTL 69

Query: 664 DLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDF 697
            +++N + +        +  L  L L++N+L + 
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 615 LDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI 674
           + L++  +  +      N V+   L+L   + I  I      L     +D S N + K  
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRK-- 56

Query: 675 PSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
                 +R L+ L +++N +        + +  L  + ++ N L
Sbjct: 57  LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 4/109 (3%)

Query: 178 LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNN 237
                EL L    +   I      L     +   +N +   +      L+ L +L + NN
Sbjct: 18  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNN 74

Query: 238 KLCGSIPLFLGNLTNLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGEN 285
           ++C         L +L  L L NNS         + +LKSL+ L +  N
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 27/125 (21%), Positives = 42/125 (33%), Gaps = 9/125 (7%)

Query: 221 SEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSIL 280
           ++  N      L L   K+   I      L   D +   +N            L+ L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTL 69

Query: 281 ELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLE---LADNELSS 337
            +  NR+          L +L  L L  NSL      ++  L SL  L    +  N + +
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRNPV-T 126

Query: 338 SIPHY 342
           +  HY
Sbjct: 127 NKKHY 131

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 4/114 (3%)

Query: 149 PQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAIL 208
            Q  +      L L   ++   I +    L   + +  + N ++  +      L  L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTL 69

Query: 209 YLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCG-SIPLFLGNLTNLDTLYLRNN 261
            ++NN +          L  L+ L L NN L        L +L +L  L +  N
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 4/114 (3%)

Query: 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFEL 424
           ++  N      LDL   K+   I +    L     +   S+  +  +      L+ L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDF-SDNEIRKL-DGFPLLRRLKTL 69

Query: 425 QLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV-IPEELGNLVKLTMLTLSDN 477
            + +N++          L  +T L L +N+L  +   + L +L  LT L +  N
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 317 SEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNL 376
           ++  N      L+L   ++   I +    L    A     N +   +      L+ L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTL 69

Query: 377 DLSENKLSGSIPHSLGNLTNLAILYLHSNTL--LGSIPREIGNLKSLFELQLGDNKLSN 433
            ++ N++          L +L  L L +N+L  LG +   + +LKSL  L +  N ++N
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTN 127

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 436 SHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRL 495
           +    N      L L    +  VI      L +   +  SDN+++  +     L  L  L
Sbjct: 12  AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTL 69

Query: 496 RLNRNHLTCNISESFGIHPKLTFIDLSHNN 525
            +N N +           P LT + L++N+
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNS 99

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 563 QLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRL 622
           Q   ID S N I  K+      L  L  L++  N++         +L  L  L L++N L
Sbjct: 43  QFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

Query: 623 SN-SIPRSLGNLVKLHYLNLSTNQFIQE 649
                   L +L  L YL +  N    +
Sbjct: 101 VELGDLDPLASLKSLTYLCILRNPVTNK 128

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.2 bits (123), Expect = 9e-08
 Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 4/110 (3%)

Query: 178 LSSLNELALTSNFLK-GSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN 236
            S + EL L ++    G +         L  L   N  L+ SI + +  L  L  L L +
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSD 73

Query: 237 NKLCGSIPLFLGNLTNLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGEN 285
           N++ G + +      NL  L L  N     S    +  L++L  L+L   
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 8/123 (6%)

Query: 597 QLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEK 656
           +L  + PS++  L     LD S +     +        +L +L+      +  I   L K
Sbjct: 10  ELRNRTPSDVKEL----VLDNSRSNEG-KLEGLTDEFEELEFLSTINVG-LTSIAN-LPK 62

Query: 657 LIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDF-IPRCFEEMNGLLYIDISY 715
           L  L +L+LS N +   +        +L  LNLS N + D       +++  L  +D+  
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

Query: 716 NEL 718
            E+
Sbjct: 123 CEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 9e-07
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 146 RIPPQIGHLSY--IEALHLFKNQLS-GPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNL 202
           RI  ++ + +   ++ L L  ++ + G +         L  L+  +  L  SI  +L  L
Sbjct: 6   RIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKL 63

Query: 203 TNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCG-SIPLFLGNLTNLDTLYLRNN 261
             L  L L +N +SG +        +L+ L L  NK+   S    L  L NL +L L N 
Sbjct: 64  NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 225 NLKSLSSLALGNNKL-CGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELG 283
               +  L L N++   G +         L+ L   N   +S   + +  L  L  LEL 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72

Query: 284 ENRLNGSIPLSLGNLTNLDTLYLYTNSLSG-SIPSEIGNLKSLSGLELADNELSSSIPHY 342
           +NR++G + +      NL  L L  N +   S    +  L++L  L+L + E+ +++  Y
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDY 131

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 390 SLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLA 449
           +  ++  L +    SN   G +       + L  L   +  L+ SI++ L  L  +  L 
Sbjct: 15  TPSDVKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLE 70

Query: 450 LYDNALSGVIPEELGNLVKLTMLTLSDNQLQ--GSIPNLRNLTNLIRLRLNRNHLT 503
           L DN +SG +         LT L LS N+++   +I  L+ L NL  L L    +T
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 441 NLTHMTLLALYDNALS-GVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNR 499
             + +  L L ++  + G +        +L  L+  +  L  SI NL  L  L +L L+ 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNKLKKLELSD 73

Query: 500 NHLTCNISESFGIHPKLTFIDLSHNNF 526
           N ++  +       P LT ++LS N  
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 563 QLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRL 622
           +L  +      +   I + + KL+ L KL L  N++ G L         L +L+LS N++
Sbjct: 43  ELEFLSTINVGL-TSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 623 SN-SIPRSLGNLVKLHYLNLSTN 644
            + S    L  L  L  L+L   
Sbjct: 101 KDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 321 NLKSLSGLELADNELSS-SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLS 379
               +  L L ++  +   +         L         L+ SI + +  L  L  L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 380 ENKLSGSIPHSLGNLTNLAILYLHSNTL--LGSIPREIGNLKSLFELQLGDNKLSN 433
           +N++SG +        NL  L L  N +  L +I   +  L++L  L L + +++N
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNCEVTN 127

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 7/105 (6%)

Query: 303 TLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGS 362
            +      L+ S+P+ I        L L +N+++   P    +L NL   Y   N L+ +
Sbjct: 16  LVNCQNIRLA-SVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-A 71

Query: 363 IPSEI-GNLKSLSNLDLSENKLSGSIPH-SLGNLTNLAILYLHSN 405
           IP+ +   L  L+ LDL++N L  SIP  +  NL +L  +YL++N
Sbjct: 72  IPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 208 LYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSI 267
           +   N  L+ S+P+ I        L L NN++    P    +L NL  LY  +N   ++I
Sbjct: 17  VNCQNIRLA-SVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAI 72

Query: 268 PSEI-GNLKSLSILELGENRLNGSIPL-SLGNLTNLDTLYLYTN 309
           P+ +   L  L+ L+L +N L  SIP  +  NL +L  +YLY N
Sbjct: 73  PTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 11/107 (10%)

Query: 255 TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGS 314
            +  +N   +S +P+ I        L L  N++    P    +L NL  LY  +N L+ +
Sbjct: 16  LVNCQNIRLAS-VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-A 71

Query: 315 IPSEI-GNLKSLSGLELADNELSSSIPHYLG---NLTNLAAFYLYKN 357
           IP+ +   L  L+ L+L DN L  SIP   G   NL +L   YLY N
Sbjct: 72  IPTGVFDKLTQLTQLDLNDNHL-KSIPR--GAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 158 EALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSL 215
           + L L  NQ++  +   V   L +L +L   SN L  +IP  +   LT L  L L++N L
Sbjct: 36  QRLWLNNNQITK-LEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHL 93

Query: 216 SGSIPSEI-GNLKSLSSLALGNN 237
             SIP     NLKSL+ + L NN
Sbjct: 94  K-SIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 12/97 (12%)

Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKS 420
           S+P+ I        L L+ N+++   P    +L NL  LY +SN  L +IP  +   L  
Sbjct: 26  SVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQ 82

Query: 421 LFELQLGDNKLSNSISH----SLGNLTHMTLLALYDN 453
           L +L L DN L  SI      +L +LTH+    LY+N
Sbjct: 83  LTQLDLNDNHLK-SIPRGAFDNLKSLTHIY---LYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP--LFLGNLT 251
           S+P   G  T+   L+L+NN ++   P    +L +L  L   +NKL  +IP  +F   LT
Sbjct: 26  SVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVF-DKLT 81

Query: 252 NLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGEN 285
            L  L L +N    SIP     NLKSL+ + L  N
Sbjct: 82  QLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 11/98 (11%)

Query: 408 LGSIPREIGNLKSLFELQLGDN---KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELG 464
           L S+P  I        L L +N   KL   +   L NL     L    N L+ +      
Sbjct: 24  LASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQ---LYFNSNKLTAIPTGVFD 78

Query: 465 NLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRN 500
            L +LT L L+DN L+ SIP     NL +L  + L  N
Sbjct: 79  KLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 443 THMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRN 500
           T    L L +N ++ + P    +LV L  L  + N+L  +IP      LT L +L LN N
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDN 91

Query: 501 HL 502
           HL
Sbjct: 92  HL 93

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 578 IPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSL-GNLVKL 636
           +P+ I   +   +L L  NQ+    P     L+ L+ L  +SN+L+ +IP  +   L +L
Sbjct: 27  VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQL 83

Query: 637 HYLNLSTNQFIQEIPI----KLEKLIHL 660
             L+L+ N  ++ IP      L+ L H+
Sbjct: 84  TQLDLNDNH-LKSIPRGAFDNLKSLTHI 110

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 53.4 bits (127), Expect = 2e-07
 Identities = 27/187 (14%), Positives = 68/187 (36%), Gaps = 22/187 (11%)

Query: 528 GQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIG--KL 585
             +S      P L    +   N +            L  +++ +  +   +  +I    L
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKP---RPNLKSLEIISGGLPDSVVEDILGSDL 218

Query: 586 SSLIKLIL---RRNQLFGQLPSELGSLIQ------LEYLDLSSNRLSNSIPRSLGN---L 633
            +L KL+L     +  F    +    L        L++L +      N +         L
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278

Query: 634 VKLHYLNLSTNQF----IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL 689
            +L  +++S         + +   ++K+ HL  +++ +N+L  E+  ++     ++ +++
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMK-IDV 337

Query: 690 SHNNLSD 696
           S +   D
Sbjct: 338 SDSQEYD 344

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.6 bits (112), Expect = 1e-05
 Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 20/174 (11%)

Query: 373 LSNLDLSENKLS----GSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSL--FELQL 426
             ++D  E ++S      +   L  +  L  L +     L    +   NLKSL      L
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGL 205

Query: 427 GDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEEL------GNLVKLTMLTLSDNQLQ 480
            D+ + + +   L NL  + L    ++                     L  L + D + Q
Sbjct: 206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ 265

Query: 481 G----SIPNLRNLTNLIRLRLNRNHLT----CNISESFGIHPKLTFIDLSHNNF 526
                       L  L  + ++   LT      + +       L FI++ +N  
Sbjct: 266 NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 1e-04
 Identities = 29/198 (14%), Positives = 68/198 (34%), Gaps = 27/198 (13%)

Query: 332 DNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN------LKSLSNLDLSENKLSG 385
            ++++  I        +    +           S I        L ++  L+  + K + 
Sbjct: 124 CSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN 183

Query: 386 SIPHSLGNLTNLAILYLHSNTLLGSIPREIG-----NLKSLFELQLG-DNKLSNSISHSL 439
           ++        NL  L + S  L  S+  +I      NL+ L  L +G ++   +   +  
Sbjct: 184 NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL-VLYVGVEDYGFDGDMNVF 242

Query: 440 ------GNLTHMTLLALYDNALSGVIPEELGN---LVKLTMLTLSDNQL-----QGSIPN 485
                     ++  L + D     V+ E       L +L  + +S   L     +  + +
Sbjct: 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH 302

Query: 486 LRNLTNLIRLRLNRNHLT 503
           +  + +L  + +  N+L+
Sbjct: 303 VDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 32/222 (14%), Positives = 65/222 (29%), Gaps = 34/222 (15%)

Query: 195 IPPSLGNLTNLAILYLHNNSLSGSIPSEIGN------LKSLSSLALGNNKLCGSIPLFLG 248
           I  +     +   L+  +        S I        L ++  L     K   ++ +   
Sbjct: 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK 190

Query: 249 NLTNLDTLYLRNNSFSSSIPSEIG--NLKSLSILELGENRLNGSIPLSLGNLTNLDTLYL 306
              NL +L + +     S+  +I   +L +L  L L     +      +     L     
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL----- 245

Query: 307 YTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGN---LTNLAAFYLYKNSLSGS- 362
                S           +L  L + D E  + +         L  L    +    L+   
Sbjct: 246 ----FSK------DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295

Query: 363 ---IPSEIGNLKSLSNLDLSENKLSG----SIPHSLGNLTNL 397
              +   +  +K L  +++  N LS      +  SL    ++
Sbjct: 296 ARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDV 337

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 53/374 (14%), Positives = 120/374 (32%), Gaps = 66/374 (17%)

Query: 309 NSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIG 368
            ++   +   I NL +L   +    +L       L     L   + +    +    +E+ 
Sbjct: 12  RAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEV- 70

Query: 369 NLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGD 428
            L SL  L+L+  +++      +  +       L S               +L E+ L  
Sbjct: 71  -LSSLRQLNLAGVRMTPVKCTVVAAV-------LGSGR------------HALDEVNLAS 110

Query: 429 NKLSN----SISHSLGNLTHMTLLALYDNALSGVIPEELG-----NLVKLTMLTLSDNQL 479
            +L      ++            L L  N+L     ++L      +  ++T L LS+N L
Sbjct: 111 CQLDPAGLRTLLPVFLRARK---LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL 167

Query: 480 QGS-----IPNLRNLTNLIRLRLNRNHLT----CNISESFGIHPKLTFIDLSHNNFYGQ- 529
             +     +  L   T++  L L    L       ++     + +L  +++++N      
Sbjct: 168 TAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227

Query: 530 ---ISSDWGKCPNLGTFDVSVNNI-------IGSLPPEIGDSSQLHVIDLSANHIIGKIP 579
              ++    + P+L    +  N +       +  L       +++ V       +     
Sbjct: 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV----- 282

Query: 580 SEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVK---- 635
           SE    S ++  + R    + +    +   ++L   DL  +R +   P     L++    
Sbjct: 283 SEYW--SVILSEVQRNLNSWDRA--RVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGE 338

Query: 636 LHYLNLSTNQFIQE 649
           +  L          
Sbjct: 339 VRALLEQLGSSGSP 352

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 53/368 (14%), Positives = 106/368 (28%), Gaps = 56/368 (15%)

Query: 357 NSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIG 416
            ++   +   I NL +L N    + KL       L     L  L+ H          E+ 
Sbjct: 12  RAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEV- 70

Query: 417 NLKSLFELQLGDNKLSNSISHSLG-----NLTHMTLLALYDNALSGVIPEELGN-LVKLT 470
            L SL +L L   +++      +          +  + L    L       L    ++  
Sbjct: 71  -LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129

Query: 471 MLTLSDNQLQ-GSIPNL-----RNLTNLIRLRLNRNHLTCN----ISESFGIHPKLTFID 520
            L L  N L   +  +L      +   +  LRL+ N LT      + E    +  +T + 
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLS 189

Query: 521 LSHNNFYGQ----ISSDWGKCPNLGTFDVSVNNI----IGSLPPEIGDSSQLHVIDLSAN 572
           L H     +    +++   +   L   +V+ N        +L     +   L ++ L  N
Sbjct: 190 LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249

Query: 573 HIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGN 632
            +     S  G+            Q+   L        ++         +S      L  
Sbjct: 250 EL-----SSEGR------------QVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSE 292

Query: 633 LVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNM----RSLEMLN 688
           +                   ++++ + L   DL  +      P +   +      +  L 
Sbjct: 293 V-------QRNLNSWDRA--RVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALL 343

Query: 689 LSHNNLSD 696
               +   
Sbjct: 344 EQLGSSGS 351

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 42/276 (15%), Positives = 78/276 (28%), Gaps = 33/276 (11%)

Query: 259 RNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSE 318
            N +  + +   I NL +L   +  + +L       L     LD L+ +    +    +E
Sbjct: 10  HNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAE 69

Query: 319 IGNLKSLSGLELADNELSSSIPHYLG-----NLTNLAAFYLYKNSLSGSIPSEIGN-LKS 372
           +  L SL  L LA   ++      +          L    L    L  +    +      
Sbjct: 70  V--LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLR 127

Query: 373 LSNLDLSENKLSGSIPHSLG-----NLTNLAILYLHSNTL----LGSIPREIGNLKSLFE 423
              L L  N L       L      +   +  L L +N L    +  +   +    S+  
Sbjct: 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH 187

Query: 424 LQLGDNKLSN----SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVK----LTMLTLS 475
           L L    L +     ++  L     +  L +  N         L    +    L +L L 
Sbjct: 188 LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247

Query: 476 DNQLQGS--------IPNLRNLTNLIRLRLNRNHLT 503
            N+L                    ++        ++
Sbjct: 248 FNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 337 SSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLT 395
           +S+P   G  T     YLY N ++   P     L  L+ LDL  N+L+  +P  +   LT
Sbjct: 22  ASVPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLT 78

Query: 396 NLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDN 429
            L  L L+ N  L SIPR    NLKSL  + L +N
Sbjct: 79  QLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query: 158 EALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSL 215
           + L+L+ NQ++  +   V   L+ L  L L +N L   +P  +   LT L  L L++N L
Sbjct: 33  QVLYLYDNQITK-LEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQL 90

Query: 216 SGSIPSEI-GNLKSLSSLALGNN 237
             SIP     NLKSL+ + L NN
Sbjct: 91  K-SIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 37/109 (33%), Positives = 49/109 (44%), Gaps = 17/109 (15%)

Query: 227 KSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENR 286
           KSL+S+  G       IP      T    LYL +N  +   P     L  L+ L+L  N+
Sbjct: 19  KSLASVPTG-------IP------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 65

Query: 287 LNGSIPLSL-GNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLELADN 333
           L   +P  +   LT L  L L  N L  SIP     NLKSL+ + L +N
Sbjct: 66  LT-VLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP--LFLGNLT 251
           S+P   G  T   +LYL++N ++   P     L  L+ L L NN+L   +P  +F   LT
Sbjct: 23  SVPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVF-DKLT 78

Query: 252 NLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGEN 285
            L  L L +N    SIP     NLKSL+ + L  N
Sbjct: 79  QLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 11/106 (10%)

Query: 376 LDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSI 435
           +D S   L+ S+P   G  T   +LYL+ N +    P     L  L  L L +N+L+  +
Sbjct: 14  VDCSGKSLA-SVPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VL 69

Query: 436 SH----SLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 477
                  L  LT    L+L DN L  +      NL  LT + L +N
Sbjct: 70  PAGVFDKLTQLTQ---LSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 443 THMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRN 500
           T   +L LYDN ++ + P     L +LT L L +NQL   +P      LT L +L LN N
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDN 88

Query: 501 HLTCNISESFGIHPKLTFIDLSHNN 525
            L      +F     LT I L  NN
Sbjct: 89  QLKSIPRGAFDNLKSLTHIWL-LNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 613 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLG 671
           + L L  N+++   P     L +L  L+L  NQ +  +P  + +KL  L++L L+ N L 
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQL- 90

Query: 672 KEIPSQIC-NMRSLEMLNLSHNN 693
           K IP     N++SL  + L  NN
Sbjct: 91  KSIPRGAFDNLKSLTHIWL-LNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 578 IPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSL-GNLVKL 636
           +P+ I   ++   L L  NQ+    P     L QL  LDL +N+L+  +P  +   L +L
Sbjct: 24  VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQL 80

Query: 637 HYLNLSTNQFIQEIPI----KLEKLIHL 660
             L+L+ NQ ++ IP      L+ L H+
Sbjct: 81  TQLSLNDNQ-LKSIPRGAFDNLKSLTHI 107

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 11/99 (11%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 599 FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLS-----TNQFIQEIPIK 653
           +  LP+      +++ +D + + + +     +  L  +  + L       +  ++ +   
Sbjct: 50  YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL 109

Query: 654 LEKLIHLSELDLSHNF-LGKEIPSQICNMRSLEMLNLSH 691
                 + E+++     +  +    + + R+L+ L LS 
Sbjct: 110 ENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	869
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.58
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.46
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.34
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.34
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.31
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.31
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.29
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.16
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.14
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.11
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.78
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.59
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.5
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.47
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.35
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.96
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.88
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.57
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.28
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.26
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	96.09
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.92
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	95.41
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	95.07
2js7_A	160	Myeloid differentiation primary response protein M	94.9
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	94.59
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	82.93
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	80.26

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.8e-95  Score=876.11  Aligned_cols=711  Identities=30%  Similarity=0.447  Sum_probs=659.2

Q ss_pred             cccccCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCccCceeeCCCCCEEEEeCCCCCccccc---CCcCCC
Q 002896           28 LIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGI---IPPQIG  104 (869)
Q Consensus        28 ~~~~~~~~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~~l~~~---~~~~l~  104 (869)
                      ++++++.++|++||++||+++.+ | . .+++|+    .+++||.|.||+|+ .++|++++|++.+ +.|.   +|++++
T Consensus         4 ~~~~~~~~~~~~all~~k~~~~~-~-~-~l~~W~----~~~~~C~w~gv~C~-~~~v~~L~L~~~~-l~g~~~~l~~~l~   74 (768)
T 3rgz_A            4 ASPSQSLYREIHQLISFKDVLPD-K-N-LLPDWS----SNKNPCTFDGVTCR-DDKVTSIDLSSKP-LNVGFSAVSSSLL   74 (768)
T ss_dssp             ----CCHHHHHHHHHHHHTTCSC-T-T-SSTTCC----TTSCGGGSTTEEEE-TTEEEEEECTTSC-CCEEHHHHHHHTT
T ss_pred             CccccCCHHHHHHHHHHHhhCCC-c-c-cccCCC----CCCCCcCCcceEEC-CCcEEEEECCCCC-cCCccCccChhHh
Confidence            44555678999999999999974 6 4 899998    56799999999998 7999999999998 9998   899999


Q ss_pred             CCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCc--ccCCCCCCCEEEcCCCCCCCCCCccc-cCCCcC
Q 002896          105 NISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPP--QIGHLSYIEALHLFKNQLSGPIPHEV-GGLSSL  181 (869)
Q Consensus       105 ~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L  181 (869)
                      ++++|+.++++.+.+. .+|+.++++++|++|+|++|.+.|.+|.  .++++++|++|++++|.+++.+|..+ .++++|
T Consensus        75 ~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  153 (768)
T 3rgz_A           75 SLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL  153 (768)
T ss_dssp             TCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred             ccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence            9999999999998775 4678999999999999999999999998  99999999999999999999888876 899999


Q ss_pred             ceeeccCcccCCCCCCc---cccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEc
Q 002896          182 NELALTSNFLKGSIPPS---LGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYL  258 (869)
Q Consensus       182 ~~L~L~~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  258 (869)
                      ++|++++|++++..|..   +.++++|++|++++|.+.+..|.  ..+++|++|++++|.+++.+|. ++++++|++|++
T Consensus       154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L  230 (768)
T 3rgz_A          154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDI  230 (768)
T ss_dssp             SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEEC
T ss_pred             CEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEEC
Confidence            99999999999888877   78999999999999999987663  8899999999999999988887 999999999999


Q ss_pred             cCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCC-CCCCeEeccCCcccc
Q 002896          259 RNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNL-KSLSGLELADNELSS  337 (869)
Q Consensus       259 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l-~~L~~L~Ls~n~l~~  337 (869)
                      ++|.+++.+|..+.++++|++|++++|++.+.+|..  .+++|++|++++|.+++.+|..+... ++|++|++++|.+++
T Consensus       231 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~  308 (768)
T 3rgz_A          231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG  308 (768)
T ss_dssp             CSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE
T ss_pred             cCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC
Confidence            999999999999999999999999999999888865  89999999999999999999988775 999999999999999


Q ss_pred             ccCCCCcCccccceeeccCCcCCCCCccc-cCCCCCCCEEEccCCcCCCCCCCCCCCCC-cccEEEccCCccccccChhh
Q 002896          338 SIPHYLGNLTNLAAFYLYKNSLSGSIPSE-IGNLKSLSNLDLSENKLSGSIPHSLGNLT-NLAILYLHSNTLLGSIPREI  415 (869)
Q Consensus       338 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~  415 (869)
                      .+|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++|++++.+|..+..++ +|++|++++|.+.+.+|..+
T Consensus       309 ~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~  388 (768)
T 3rgz_A          309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL  388 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred             ccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh
Confidence            99999999999999999999999888876 89999999999999999999999998887 99999999999999998888


Q ss_pred             hC--CCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCC-CcCCCCCC
Q 002896          416 GN--LKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNL  492 (869)
Q Consensus       416 ~~--l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L  492 (869)
                      ..  +++|++|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|++|++++|.+.+.+| .+..+++|
T Consensus       389 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  468 (768)
T 3rgz_A          389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL  468 (768)
T ss_dssp             TCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             hhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence            77  8899999999999999999999999999999999999999999999999999999999999998887 68899999


Q ss_pred             CEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCC
Q 002896          493 IRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSAN  572 (869)
Q Consensus       493 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  572 (869)
                      ++|++++|.+++.+|..+..+++|++|++++|++++.+|..++.+++|++|++++|++++.+|..+..+++|++|++++|
T Consensus       469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred             eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCcccccCcccceeeccCc----------------------cccccCcccccCCccccccccccccccccccccc
Q 002896          573 HIIGKIPSEIGKLSSLIKLILRRN----------------------QLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSL  630 (869)
Q Consensus       573 ~l~~~~p~~l~~l~~L~~L~L~~n----------------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  630 (869)
                      +++|.+|..+.....+..+.+..+                      .+.+..+..+..++.++.++++.|.+.|.+|..+
T Consensus       549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~  628 (768)
T 3rgz_A          549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF  628 (768)
T ss_dssp             EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred             ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence            999999999888777666555432                      2445666777788888999999999999999999


Q ss_pred             cCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcE
Q 002896          631 GNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLY  710 (869)
Q Consensus       631 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  710 (869)
                      +.+++|+.|||++|+++|.+|..++++++|+.|+|++|+++|.+|+.++++++|++|||++|+++|.+|..++.+++|++
T Consensus       629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  708 (768)
T 3rgz_A          629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE  708 (768)
T ss_dssp             SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred             hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCcccccCCCCccccccchhhhcCCCCCCCCCCCCCCCCCC
Q 002896          711 IDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKAS  755 (869)
Q Consensus       711 L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~~~~~~~C~~~  755 (869)
                      ||+++|+++|.||..++|.++...+|.||+++||. |. ..|...
T Consensus       709 L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~-~l-~~C~~~  751 (768)
T 3rgz_A          709 IDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY-PL-PRCDPS  751 (768)
T ss_dssp             EECCSSEEEEECCSSSSGGGSCGGGGCSCTEEEST-TS-CCCCSC
T ss_pred             EECcCCcccccCCCchhhccCCHHHhcCCchhcCC-CC-cCCCCC
Confidence            99999999999999999999999999999999997 43 489754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=9.6e-76  Score=707.02  Aligned_cols=630  Identities=32%  Similarity=0.432  Sum_probs=578.6

Q ss_pred             EEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCC--CCCCCCcCCcccCCCccCCCCCCccc-CCCCCCCEE
Q 002896           84 VNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPP--QIGNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEAL  160 (869)
Q Consensus        84 v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~--~l~~l~~L~~L~Ls~n~~~~~~p~~l-~~l~~L~~L  160 (869)
                      +..++++..+ +. .+|+.++++++|++|||++|.++|.+|.  .++++++|++|+|++|.+.+.+|..+ .++++|++|
T Consensus        79 L~~l~~~~~~-~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  156 (768)
T 3rgz_A           79 LESLFLSNSH-IN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL  156 (768)
T ss_dssp             CCEEECTTSC-EE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred             ccccCCcCCC-cC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence            3444554443 22 2558899999999999999999999998  99999999999999999999999877 899999999


Q ss_pred             EcCCCCCCCCCCcc---ccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCC
Q 002896          161 HLFKNQLSGPIPHE---VGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNN  237 (869)
Q Consensus       161 ~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  237 (869)
                      ++++|.+++..|..   ++++++|++|++++|.+.+..+.  .++++|++|++++|.+.+.+|. ++++++|++|++++|
T Consensus       157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n  233 (768)
T 3rgz_A          157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN  233 (768)
T ss_dssp             ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS
T ss_pred             ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC
Confidence            99999999888877   89999999999999999987654  8899999999999999998887 999999999999999


Q ss_pred             cCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCC-CCCCeeecccccccCCCC
Q 002896          238 KLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNL-TNLDTLYLYTNSLSGSIP  316 (869)
Q Consensus       238 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l-~~L~~L~L~~n~~~~~~p  316 (869)
                      .+++.+|..++.+++|++|++++|.+++.+|..  .+++|++|++++|++++.+|..+... ++|++|++++|.+++.+|
T Consensus       234 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p  311 (768)
T 3rgz_A          234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP  311 (768)
T ss_dssp             CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred             cCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence            999999999999999999999999999888765  89999999999999999999988775 999999999999999999


Q ss_pred             CcccCCCCCCeEeccCCccccccCCC-CcCccccceeeccCCcCCCCCccccCCCC-CCCEEEccCCcCCCCCCCCCCC-
Q 002896          317 SEIGNLKSLSGLELADNELSSSIPHY-LGNLTNLAAFYLYKNSLSGSIPSEIGNLK-SLSNLDLSENKLSGSIPHSLGN-  393 (869)
Q Consensus       317 ~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~-  393 (869)
                      ..++++++|+.|++++|.+++.+|.. +..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+.. 
T Consensus       312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~  391 (768)
T 3rgz_A          312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN  391 (768)
T ss_dssp             GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred             hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhc
Confidence            99999999999999999999888865 89999999999999999999999998887 9999999999999999988877 


Q ss_pred             -CCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEE
Q 002896          394 -LTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTML  472 (869)
Q Consensus       394 -l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  472 (869)
                       +++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|
T Consensus       392 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  471 (768)
T 3rgz_A          392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL  471 (768)
T ss_dssp             TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence             8899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCcCcCCCC-CcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCC
Q 002896          473 TLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNII  551 (869)
Q Consensus       473 ~Ls~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~  551 (869)
                      ++++|++.+..| .+..+++|++|++++|.+++.+|..++.+++|++|++++|++++.+|..+..+++|+.|++++|+++
T Consensus       472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            999999998888 7899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCcCCCCCCCEEEccCC----------------------cccccCCcccccCcccceeeccCccccccCcccccCC
Q 002896          552 GSLPPEIGDSSQLHVIDLSAN----------------------HIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSL  609 (869)
Q Consensus       552 ~~~p~~l~~l~~L~~L~Ls~n----------------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l  609 (869)
                      |.+|..+.....+..+++..+                      .+.+..+..+..++.++.+++..|.+.|.+|..+..+
T Consensus       552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l  631 (768)
T 3rgz_A          552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN  631 (768)
T ss_dssp             SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred             CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence            999998887766655544431                      2345566677778888999999999999999999999


Q ss_pred             ccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeC
Q 002896          610 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL  689 (869)
Q Consensus       610 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  689 (869)
                      ++|++||+++|+++|.+|..++++++|+.|+|++|+++|.+|..++++++|++|||++|+++|.+|+.++.+++|++||+
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l  711 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL  711 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcchhhhcCCCCcEEEccCCccccc
Q 002896          690 SHNNLSDFIPRCFEEMNGLLYIDISYNELHGP  721 (869)
Q Consensus       690 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  721 (869)
                      ++|+++|.+|..- .+..+....+.+|+--|-
T Consensus       712 s~N~l~g~iP~~~-~~~~~~~~~~~gN~~Lcg  742 (768)
T 3rgz_A          712 SNNNLSGPIPEMG-QFETFPPAKFLNNPGLCG  742 (768)
T ss_dssp             CSSEEEEECCSSS-SGGGSCGGGGCSCTEEES
T ss_pred             cCCcccccCCCch-hhccCCHHHhcCCchhcC
Confidence            9999999999642 233444556778875543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.3e-63  Score=596.36  Aligned_cols=597  Identities=24%  Similarity=0.248  Sum_probs=466.6

Q ss_pred             cEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCc
Q 002896          110 KYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSN  189 (869)
Q Consensus       110 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  189 (869)
                      +.+|.++++++ .+|..+.  +++++|+|++|.+.+..|..|+++++|++|++++|.+++..|..|+++++|++|++++|
T Consensus         7 ~~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n   83 (680)
T 1ziw_A            7 EVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN   83 (680)
T ss_dssp             SEEECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred             CeeECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence            57888888887 5776665  78999999999998777778999999999999999999888888899999999999999


Q ss_pred             ccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCC
Q 002896          190 FLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPS  269 (869)
Q Consensus       190 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  269 (869)
                      .+++..+..|+++++|++|++++|.+++..|..++++++|++|++++|.+++..|..++++++|++|++++|.+++..+.
T Consensus        84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  163 (680)
T 1ziw_A           84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE  163 (680)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred             ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence            98876666788889999999999888877777888888889999888888888888888888888888888888776655


Q ss_pred             CCC--CCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcc---cCCCCCCeEeccCCccccccCCCCc
Q 002896          270 EIG--NLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI---GNLKSLSGLELADNELSSSIPHYLG  344 (869)
Q Consensus       270 ~l~--~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l---~~l~~L~~L~Ls~n~l~~~~~~~l~  344 (869)
                      .+.  .+++|++|++++|++.+..|..+..+++|+.|++.++.+.+.....+   ...++|+.|++++|.+.+..|..+.
T Consensus       164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~  243 (680)
T 1ziw_A          164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL  243 (680)
T ss_dssp             HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred             HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence            443  45788888888888887777778888888888888776653221111   1236778888888887777777777


Q ss_pred             Cccc--cceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCC
Q 002896          345 NLTN--LAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLF  422 (869)
Q Consensus       345 ~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  422 (869)
                      .++.  |+.|++++|.+++..|..+..+++|++|++++|++.+..|..|..+++|+.|++++|...+.++.         
T Consensus       244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~---------  314 (680)
T 1ziw_A          244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL---------  314 (680)
T ss_dssp             GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-------------
T ss_pred             ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc---------
Confidence            6654  77777777777776667777777777777777777777777777777777777776654432110         


Q ss_pred             ccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCC-C--CcC--CCCCCCEEEC
Q 002896          423 ELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSI-P--NLR--NLTNLIRLRL  497 (869)
Q Consensus       423 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~--~l~--~l~~L~~L~l  497 (869)
                            ..+.......+..+++|+.|++++|.+.+..+..|.++++|++|++++|.+.... +  .+.  ..++|+.|++
T Consensus       315 ------~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L  388 (680)
T 1ziw_A          315 ------ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL  388 (680)
T ss_dssp             --------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC
T ss_pred             ------ccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEEC
Confidence                  0011111123455666666666666666666666666666666666666543211 1  122  2257888888


Q ss_pred             cCCcCccccCccccCCCCCCEEeCCCCcccccCC-cCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCccc-
Q 002896          498 NRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS-SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHII-  575 (869)
Q Consensus       498 ~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-  575 (869)
                      ++|.+++..+..|..+++|++|++++|.+++.++ ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+. 
T Consensus       389 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  468 (680)
T 1ziw_A          389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN  468 (680)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBC
T ss_pred             CCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccc
Confidence            8888888888888888888888888888877655 57788888888888888888777888888888888888888876 


Q ss_pred             -ccCCcccccCcccceeeccCccccccCcccccCCcccccccccccccccccc--------ccccCCCCCCeeeCcCCcC
Q 002896          576 -GKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIP--------RSLGNLVKLHYLNLSTNQF  646 (869)
Q Consensus       576 -~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l  646 (869)
                       +.+|..+..+++|+.|++++|++.+..+..|.++++|++|++++|++++..+        ..|.++++|+.|+|++|++
T Consensus       469 ~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l  548 (680)
T 1ziw_A          469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF  548 (680)
T ss_dssp             TTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred             cccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence             5677888888888888888888888888888888899999999998876432        2478999999999999999


Q ss_pred             CcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhh-cCCCCcEEEccCCcccccCCC
Q 002896          647 IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFE-EMNGLLYIDISYNELHGPIPN  724 (869)
Q Consensus       647 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~~p~  724 (869)
                      +...+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..|..+. .+++|+.+++++|++.|.|+.
T Consensus       549 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            866666799999999999999999988888899999999999999999999999887 789999999999999999986

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-64  Score=615.68  Aligned_cols=669  Identities=22%  Similarity=0.217  Sum_probs=479.7

Q ss_pred             CEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCC-CccccCCCCCCEEEccC
Q 002896          158 EALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSI-PSEIGNLKSLSSLALGN  236 (869)
Q Consensus       158 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~  236 (869)
                      +..+.++++++ .+|.   -.++|++|+|++|.+++..|..|.++++|++|++++|...+.+ |..|.++++|++|++++
T Consensus         7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            46777788887 5565   4578889999999888888888888888888888888655555 67788888888888888


Q ss_pred             CcCCCCcccccCCCCCCCEEEccCCCCCCCCCCC--CCCCccCCccccCcccCCcccC-ccccCCCCCCeeecccccccC
Q 002896          237 NKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSE--IGNLKSLSILELGENRLNGSIP-LSLGNLTNLDTLYLYTNSLSG  313 (869)
Q Consensus       237 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~~~~~~p-~~l~~l~~L~~L~L~~n~~~~  313 (869)
                      |.+++..|..|+++++|++|++++|.+++.+|..  +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+++
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            8888877888888888888888888888766554  7888888888888888876654 467888888888888888887


Q ss_pred             CCCCcccCC--CCCCeEeccCCccccccCCCCcCccc------cceeeccCCcCCCCCccccCCC---CCCCEEEccCCc
Q 002896          314 SIPSEIGNL--KSLSGLELADNELSSSIPHYLGNLTN------LAAFYLYKNSLSGSIPSEIGNL---KSLSNLDLSENK  382 (869)
Q Consensus       314 ~~p~~l~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~  382 (869)
                      ..+..+..+  ++|+.|++++|.+.+..|..++.+++      |+.|++++|.+++..+..+...   +.++.+.++.+.
T Consensus       163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~  242 (844)
T 3j0a_A          163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI  242 (844)
T ss_dssp             CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred             eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence            777777766  77888888888887777766665554      7777777777776666555432   456666665332


Q ss_pred             CCCCCCCCCCCCCcccEEEccCCccccccChhhhCC--CCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCC
Q 002896          383 LSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNL--KSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIP  460 (869)
Q Consensus       383 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  460 (869)
                      ....               ...+.+.+.....+..+  ++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+
T Consensus       243 ~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~  307 (844)
T 3j0a_A          243 MGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD  307 (844)
T ss_dssp             CBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred             cccc---------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence            2211               01122222223334333  567777777777777777777777788888888888877777


Q ss_pred             ccccCCCCCcEEecCCCcCcCCCC-CcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCC
Q 002896          461 EELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPN  539 (869)
Q Consensus       461 ~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~  539 (869)
                      ..|..+++|++|++++|.+.+..+ .+..+++|++|++++|.+....+..|..+++|++|++++|.+++.     ..+++
T Consensus       308 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~  382 (844)
T 3j0a_A          308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPS  382 (844)
T ss_dssp             TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCS
T ss_pred             HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCC
Confidence            777778888888888888776655 677888888888888888877777888888888888888888743     23778


Q ss_pred             CcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCC-cccccCcccceeeccCccccccCcc-cccCCcccccccc
Q 002896          540 LGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIP-SEIGKLSSLIKLILRRNQLFGQLPS-ELGSLIQLEYLDL  617 (869)
Q Consensus       540 L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L  617 (869)
                      |+.|++++|+++ .+|..   ..+++.|++++|++.+... ..+.++++|+.|++++|++.+..+. .+..+++|++|++
T Consensus       383 L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L  458 (844)
T 3j0a_A          383 IPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL  458 (844)
T ss_dssp             CSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEE
T ss_pred             cchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccC
Confidence            888999988887 44443   4578899999998876422 3356789999999999998876543 4566889999999


Q ss_pred             cccccc-----ccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCC
Q 002896          618 SSNRLS-----NSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHN  692 (869)
Q Consensus       618 s~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  692 (869)
                      ++|.++     +..+..|.++++|+.|+|++|++++.+|..+.++++|++|+|++|++++..|..+.  ++|+.|||++|
T Consensus       459 s~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N  536 (844)
T 3j0a_A          459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN  536 (844)
T ss_dssp             ESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE
T ss_pred             CCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC
Confidence            999987     44556788999999999999999999999999999999999999999988877766  89999999999


Q ss_pred             CCCCCcchhhhcCCCCcEEEccCCcccccCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCC--------Ccc
Q 002896          693 NLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKPA--------SRK  764 (869)
Q Consensus       693 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~~~~~~~C~~~~~~~~~--------~~~  764 (869)
                      ++++.+|..|.   +|+.+++++|++.|.|+..+    |......++..+||. +....|..|...++.        .+.
T Consensus       537 ~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~~----f~~~~~~~~~~~~~~-~~~~~C~~p~~~~g~~l~~~~~~~C~  608 (844)
T 3j0a_A          537 QLLAPNPDVFV---SLSVLDITHNKFICECELST----FINWLNHTNVTIAGP-PADIYCVYPDSFSGVSLFSLSTEGCD  608 (844)
T ss_dssp             CCCCCCSCCCS---SCCEEEEEEECCCCSSSCCS----HHHHHHHTTTTTCCC-GGGCCCSSCSSSCSCCTTTCCCCCC-
T ss_pred             cCCCCChhHhC---CcCEEEecCCCcccccccHH----HHHHHHhcCcccccc-cccCccCCchhhCCCccccCccccCC
Confidence            99999998764   78999999999999998543    222233456666665 444567554321110        111


Q ss_pred             e-----EEEeh-HHHH-HHHHHHHHHHHHHHHH------hhchhhhcccCCCCCCCCCcccccccccCcCHHHHHHHhcC
Q 002896          765 I-----WVVIV-FPLL-GTVALLISLIALFFIF------RRRKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEIIRQRMV  831 (869)
Q Consensus       765 ~-----~~~i~-~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isy~~~~~a~~~  831 (869)
                      .     ...++ ++++ ++++++++++++++++      |++++.+.+....  ........+.||+||+|+..|++|+.
T Consensus       609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~~~~~~yd~fisy~~~d~~~v~  686 (844)
T 3j0a_A          609 EEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQRLVFKDH--PQGTEPDMYKYDAYLCFSSKDFTWVQ  686 (844)
T ss_dssp             ---------CHHHHHHHHHHHHHHHTTTSHHHHC----------------CC--CGGGSSSCCCCSEEEECCSTTHHHHH
T ss_pred             chhhccccceehhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhccc--cccccccceeccEEEEeeCCcHHHHH
Confidence            0     01111 1111 1111111111111111      1111111111111  01112235789999999999999999


Q ss_pred             CCcccccchh-----h-------------hhhhhhhhhHHHHhcc-----cccccccc
Q 002896          832 LMMSTALEKV-----D-------------KEVYTKLIYLLEKSLQ-----SRNFIRHS  866 (869)
Q Consensus       832 ~~~~~~Le~~-----~-------------~~i~~~i~~~~~~s~~-----s~~fl~~~  866 (869)
                      .++.|.||+.     +             ++|+++|.++||+|||     |++|++.+
T Consensus       687 ~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~  744 (844)
T 3j0a_A          687 NALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG  744 (844)
T ss_dssp             HTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred             HHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence            8999999973     1             7899999999999999     99998753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.1e-62  Score=582.66  Aligned_cols=577  Identities=22%  Similarity=0.230  Sum_probs=451.5

Q ss_pred             cCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccC
Q 002896           98 IIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGG  177 (869)
Q Consensus        98 ~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  177 (869)
                      .+|..+.  +++++|+|++|.+++..+..|+++++|++|+|++|.+.+..|..|+++++|++|++++|.+++..+..|++
T Consensus        18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~   95 (680)
T 1ziw_A           18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF   95 (680)
T ss_dssp             SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence            4666554  79999999999999887888999999999999999999999999999999999999999999666667999


Q ss_pred             CCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccC--CCCCCCE
Q 002896          178 LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLG--NLTNLDT  255 (869)
Q Consensus       178 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~  255 (869)
                      +++|++|++++|++++..|..++++++|++|++++|.+++..|..++++++|++|++++|.+++..+..+.  .+++|++
T Consensus        96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~  175 (680)
T 1ziw_A           96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK  175 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred             CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence            99999999999999988888999999999999999999999999999999999999999999987776654  5689999


Q ss_pred             EEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCcccc---CCCCCCeeecccccccCCCCCcccCCCC--CCeEec
Q 002896          256 LYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLG---NLTNLDTLYLYTNSLSGSIPSEIGNLKS--LSGLEL  330 (869)
Q Consensus       256 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~---~l~~L~~L~L~~n~~~~~~p~~l~~l~~--L~~L~L  330 (869)
                      |++++|.+++..|..+..+++|+.|++.++.+.+.....+.   ..++|++|++++|.+++..|.++..++.  |+.|++
T Consensus       176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L  255 (680)
T 1ziw_A          176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL  255 (680)
T ss_dssp             EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred             EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence            99999999999999999999999999999887643322221   4589999999999999999999988765  999999


Q ss_pred             cCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCC-----CCC----CCCCCCcccEEE
Q 002896          331 ADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGS-----IPH----SLGNLTNLAILY  401 (869)
Q Consensus       331 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~----~l~~l~~L~~L~  401 (869)
                      ++|.+++..|..++.+++|++|++++|.+.+..|..+..+++|++|++++|...+.     +|.    .|..+++|++|+
T Consensus       256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~  335 (680)
T 1ziw_A          256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN  335 (680)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred             CCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999998765532     222    566777788888


Q ss_pred             ccCCccccccChhhhCCCCCCccccCCCcCcccc--cccccC--CCCCCeEEccCCCCcccCCccccCCCCCcEEecCCC
Q 002896          402 LHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSI--SHSLGN--LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN  477 (869)
Q Consensus       402 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  477 (869)
                      +++|.+.+..+..+..+++|++|++++|.+....  ...+..  .++|+.|++++|.+++..|..+..+++|++|++++|
T Consensus       336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  415 (680)
T 1ziw_A          336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN  415 (680)
T ss_dssp             CCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC
Confidence            8877777776777777777777777777643221  112221  245666666666666665555555555555555555


Q ss_pred             cCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCC--CCCC
Q 002896          478 QLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNII--GSLP  555 (869)
Q Consensus       478 ~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~--~~~p  555 (869)
                      .+.+.++                      +..|..+++|++|++++|++.+..+..+..+++|+.|++++|.+.  +.+|
T Consensus       416 ~l~~~~~----------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p  473 (680)
T 1ziw_A          416 EIGQELT----------------------GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP  473 (680)
T ss_dssp             CCEEECC----------------------SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS
T ss_pred             cCccccC----------------------cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC
Confidence            5544332                      134444455555555555555544555555555555555555544  3455


Q ss_pred             cCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccC--------cccccCCcccccccccccccccccc
Q 002896          556 PEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQL--------PSELGSLIQLEYLDLSSNRLSNSIP  627 (869)
Q Consensus       556 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~Ls~n~l~~~~~  627 (869)
                      ..+..+++|++|++++|++++..+..+.++++|++|++++|++.+..        +..+.++++|++|+|++|+++...+
T Consensus       474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~  553 (680)
T 1ziw_A          474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV  553 (680)
T ss_dssp             CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence            55556666666666666665555555566666666666666655432        2236788899999999999986655


Q ss_pred             ccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhc-CCCCCcEEeCCCCCCCCCc
Q 002896          628 RSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSHNNLSDFI  698 (869)
Q Consensus       628 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~  698 (869)
                      ..|.++++|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|+.|++++|++...-
T Consensus       554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c  625 (680)
T 1ziw_A          554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC  625 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred             HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence            6789999999999999999887777788999999999999999999888887 7899999999999998753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.6e-57  Score=532.53  Aligned_cols=537  Identities=20%  Similarity=0.222  Sum_probs=314.4

Q ss_pred             cEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCc
Q 002896          110 KYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSN  189 (869)
Q Consensus       110 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  189 (869)
                      +.++.++..++ .+|..+.  +++++|++++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|++++|
T Consensus        15 ~~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n   91 (606)
T 3t6q_A           15 KTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN   91 (606)
T ss_dssp             TEEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             ceEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence            46677777766 5666554  36777777777777666777777777777777777777666666666666666666666


Q ss_pred             ccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCC
Q 002896          190 FLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPS  269 (869)
Q Consensus       190 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  269 (869)
                      ++++..|..++++++|++|++++|.+++..+..++++++|++|++++|.+++                        ..+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~------------------------~~~~  147 (606)
T 3t6q_A           92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS------------------------IKLP  147 (606)
T ss_dssp             CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC------------------------CCCC
T ss_pred             cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc------------------------cCcc
Confidence            6665555555555555555555555554434444555555555555554443                        2222


Q ss_pred             CCCCCccCCccccCcccCCcccCccccCCCCCC--eeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCcc
Q 002896          270 EIGNLKSLSILELGENRLNGSIPLSLGNLTNLD--TLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLT  347 (869)
Q Consensus       270 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~--~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  347 (869)
                      .+..+++|++|++++|++.+..|..++.+++|+  +|++++|.+++..|..+. ..+|+.|++++|..   .+..+..+.
T Consensus       148 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~---~~~~~~~l~  223 (606)
T 3t6q_A          148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQN---LLVIFKGLK  223 (606)
T ss_dssp             TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSC---HHHHHHHTT
T ss_pred             cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCchh---HHHHhhhcc
Confidence            223344555555555555444444455555555  455555555544443332 23455555555431   111122222


Q ss_pred             ccceeeccCCcCCC-----CCccccCCCC--CCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCC
Q 002896          348 NLAAFYLYKNSLSG-----SIPSEIGNLK--SLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKS  420 (869)
Q Consensus       348 ~L~~L~L~~n~l~~-----~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  420 (869)
                      .+....+....+.+     ..+..+..+.  +|+.|++++|.+++..+..|..+++|++|++++|.+. .+         
T Consensus       224 ~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~l---------  293 (606)
T 3t6q_A          224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-EL---------  293 (606)
T ss_dssp             TCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CC---------
T ss_pred             ccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CC---------
Confidence            22111111111110     0011111111  3444444444444444444444444444444444443 33         


Q ss_pred             CCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCC--CcCCCCCCCEEECc
Q 002896          421 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP--NLRNLTNLIRLRLN  498 (869)
Q Consensus       421 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~l~~l~~L~~L~l~  498 (869)
                                     |..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++  .+..+++|++|+++
T Consensus       294 ---------------p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  358 (606)
T 3t6q_A          294 ---------------PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS  358 (606)
T ss_dssp             ---------------CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECC
T ss_pred             ---------------ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECC
Confidence                           3344444555555555555554444445555555555555555443332  24455555555555


Q ss_pred             CCcCcccc--CccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccc
Q 002896          499 RNHLTCNI--SESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIG  576 (869)
Q Consensus       499 ~n~l~~~~--~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  576 (869)
                      +|.+++..  +..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..|..                   
T Consensus       359 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------------  419 (606)
T 3t6q_A          359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS-------------------  419 (606)
T ss_dssp             SSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC-------------------
T ss_pred             CCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch-------------------
Confidence            55555443  444555555555555555555555555555555555555544444333222                   


Q ss_pred             cCCcccccCcccceeeccCccccccCcccccCCcccccccccccccccc---ccccccCCCCCCeeeCcCCcCCcccchh
Q 002896          577 KIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNS---IPRSLGNLVKLHYLNLSTNQFIQEIPIK  653 (869)
Q Consensus       577 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  653 (869)
                          .+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++.   .+..+..+++|+.|++++|++++.+|..
T Consensus       420 ----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  495 (606)
T 3t6q_A          420 ----PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA  495 (606)
T ss_dssp             ----TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred             ----hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh
Confidence                244555555555555555555555556666677777777776652   2356888899999999999999888899


Q ss_pred             hhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCc
Q 002896          654 LEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNST  726 (869)
Q Consensus       654 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~  726 (869)
                      ++.+++|++|+|++|++++.+|+.+..+++| .|++++|++++.+|..+..+++|+++++++|+++|.|+..+
T Consensus       496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~  567 (606)
T 3t6q_A          496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY  567 (606)
T ss_dssp             TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHH
T ss_pred             hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHH
Confidence            9999999999999999999999999999999 99999999999999999999999999999999999998543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=9.6e-56  Score=521.26  Aligned_cols=533  Identities=21%  Similarity=0.217  Sum_probs=402.5

Q ss_pred             cCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccC
Q 002896           98 IIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGG  177 (869)
Q Consensus        98 ~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  177 (869)
                      .+|..+.  +++++|||++|.+++..|..|+++++|++|+|++|.+.+..|.+|+++++|++|++++|.+++..|..|++
T Consensus        26 ~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  103 (606)
T 3t6q_A           26 EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG  103 (606)
T ss_dssp             SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred             cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence            4555554  37899999999999888999999999999999999999888999999999999999999999988999999


Q ss_pred             CCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCC--E
Q 002896          178 LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLD--T  255 (869)
Q Consensus       178 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~  255 (869)
                      +++|++|++++|++++..+..++++++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..++.+++|+  +
T Consensus       104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~  183 (606)
T 3t6q_A          104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS  183 (606)
T ss_dssp             CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEE
T ss_pred             cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeE
Confidence            99999999999999988788899999999999999999985544555699999999999999988888899999999  8


Q ss_pred             EEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCcc
Q 002896          256 LYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNEL  335 (869)
Q Consensus       256 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l  335 (869)
                      |++++|.+++..|..+.. .+|+.|++++|.   .++..+..+.+++...+....+           ..+...++....+
T Consensus       184 L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~-----------~~~~~~~i~~~~~  248 (606)
T 3t6q_A          184 LNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTF-----------EDMDDEDISPAVF  248 (606)
T ss_dssp             EECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCC-----------TTSCCCCCCGGGG
T ss_pred             EecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhh-----------ccccccccChhHh
Confidence            999999999877776654 689999999886   3444555555554444432222           2222222222222


Q ss_pred             ccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhh
Q 002896          336 SSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI  415 (869)
Q Consensus       336 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  415 (869)
                      .+     +.. .+|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+.+..|..+
T Consensus       249 ~~-----l~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~  321 (606)
T 3t6q_A          249 EG-----LCE-MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA  321 (606)
T ss_dssp             GG-----GGG-SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCG
T ss_pred             ch-----hhc-CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhh
Confidence            21     111 16888999999988887777888999999999999888 677788888899999998888887777777


Q ss_pred             hCCCCCCccccCCCcCcccccc-cccCCCCCCeEEccCCCCcccC--CccccCCCCCcEEecCCCcCcCCCCCcCCCCCC
Q 002896          416 GNLKSLFELQLGDNKLSNSISH-SLGNLTHMTLLALYDNALSGVI--PEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNL  492 (869)
Q Consensus       416 ~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L  492 (869)
                      ..+++|++|++++|.+.+.++. .+..+++|+.|++++|.+.+..  +.                       .+..+++|
T Consensus       322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----------------------~~~~l~~L  378 (606)
T 3t6q_A          322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL-----------------------QLRNLSHL  378 (606)
T ss_dssp             GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT-----------------------TTTTCTTC
T ss_pred             hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch-----------------------hcccCCCC
Confidence            8888888888888777654443 3566666666666666665443  33                       45556666


Q ss_pred             CEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCc-CcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccC
Q 002896          493 IRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISS-DWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSA  571 (869)
Q Consensus       493 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~  571 (869)
                      ++|++++|.+.+..+..|..+++|++|++++|.+++..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus       379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  458 (606)
T 3t6q_A          379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG  458 (606)
T ss_dssp             CEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCC
Confidence            6666777766667777777888888888888888776654 377888888888888888877777788888888888888


Q ss_pred             CcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccc
Q 002896          572 NHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIP  651 (869)
Q Consensus       572 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  651 (869)
                      |++++...                     ..+..+..+++|++|++++|++++..|..|..+++|+.|+|++|++++.+|
T Consensus       459 n~l~~~~~---------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  517 (606)
T 3t6q_A          459 NHFPKGNI---------------------QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI  517 (606)
T ss_dssp             CBCGGGEE---------------------CSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred             CCCCcccc---------------------ccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCCh
Confidence            88765211                     011223355555666666666665656666666666666666666666666


Q ss_pred             hhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcc
Q 002896          652 IKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP  699 (869)
Q Consensus       652 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  699 (869)
                      ..+.+++.| .|++++|++++.+|..+..+++|+.|++++|++++..+
T Consensus       518 ~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          518 EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             GGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             hHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            666666666 67777777766666667777777777777777766433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.5e-56  Score=524.05  Aligned_cols=540  Identities=21%  Similarity=0.226  Sum_probs=345.8

Q ss_pred             CcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeecccc
Q 002896          134 KFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNN  213 (869)
Q Consensus       134 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  213 (869)
                      ++++.+++.++ .+|..+.  ++|++|++++|.+++..+..|+++++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n   90 (606)
T 3vq2_A           14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN   90 (606)
T ss_dssp             TEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence            45555555555 4454433  45555555555555544445555555555555555555444444555555555555555


Q ss_pred             CCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCc-ccC
Q 002896          214 SLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNG-SIP  292 (869)
Q Consensus       214 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~p  292 (869)
                      .+++..|..|+++++|++|++++|.++                        +..+..++++++|++|++++|.+.+ .+|
T Consensus        91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~lp  146 (606)
T 3vq2_A           91 PIQSFSPGSFSGLTSLENLVAVETKLA------------------------SLESFPIGQLITLKKLNVAHNFIHSCKLP  146 (606)
T ss_dssp             CCCCCCTTSSTTCTTCCEEECTTSCCC------------------------CSSSSCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred             cccccChhhcCCcccCCEEEccCCccc------------------------cccccccCCCCCCCEEeCCCCcccceech
Confidence            544444444444444444444444444                        4333444444444455554444443 334


Q ss_pred             ccccCCCCCCeeecccccccCCCCCcccCCCCCC----eEeccCCccccccCCCCcCccccceeeccCCcCC-CCCcccc
Q 002896          293 LSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLS----GLELADNELSSSIPHYLGNLTNLAAFYLYKNSLS-GSIPSEI  367 (869)
Q Consensus       293 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~----~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~  367 (869)
                      ..++++++|++|++++|.+++..|..++.+++|+    .|++++|.+++..+..+... +|+.|++++|.+. +..|..+
T Consensus       147 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~  225 (606)
T 3vq2_A          147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCL  225 (606)
T ss_dssp             GGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHH
T ss_pred             HhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHh
Confidence            4555555555555555555544444444444333    56666666655444444333 5666666666655 2344555


Q ss_pred             CCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCcccc-CCCcCcccccccccCCCCCC
Q 002896          368 GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQL-GDNKLSNSISHSLGNLTHMT  446 (869)
Q Consensus       368 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~l~~l~~L~  446 (869)
                      .++++|+.+++..+.+.+...        +..       +....+..+..+ .++.+++ ..+.+.+..+. +..+++|+
T Consensus       226 ~~l~~L~~l~l~~~~~~~~~~--------l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~  288 (606)
T 3vq2_A          226 QNLAGLHVHRLILGEFKDERN--------LEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVS  288 (606)
T ss_dssp             HTTTTCEEEEEEEECCTTSCC--------CSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCS
T ss_pred             ccccccccccccccccccCCc--------ccc-------cChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCC
Confidence            666666666555443322100        000       000011111111 2333333 33444444444 55555555


Q ss_pred             eEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcc
Q 002896          447 LLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF  526 (869)
Q Consensus       447 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l  526 (869)
                      .+++++|.+.. +| .+..+++|++|++++|.+ +.+|.+ .+++|++|++++|...+..  .+..+++|++|++++|.+
T Consensus       289 ~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l  362 (606)
T 3vq2_A          289 AMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNAL  362 (606)
T ss_dssp             EEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCE
T ss_pred             EEEecCccchh-hh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCcc
Confidence            55555555543 23 555556666666666666 444555 6666666666666443332  455677777777777777


Q ss_pred             ccc--CCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCC-cccccCcccceeeccCccccccCc
Q 002896          527 YGQ--ISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIP-SEIGKLSSLIKLILRRNQLFGQLP  603 (869)
Q Consensus       527 ~~~--~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~  603 (869)
                      ++.  .+..+..+++|++|++++|.+.+ +|..+..+++|++|++++|++.+..| ..+..+++|+.|++++|.+.+..|
T Consensus       363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  441 (606)
T 3vq2_A          363 SFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD  441 (606)
T ss_dssp             EEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT
T ss_pred             CCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch
Confidence            665  36666777788888888887764 55777888888888888888887777 578888899999999999888888


Q ss_pred             ccccCCccccccccccccccc-cccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCC
Q 002896          604 SELGSLIQLEYLDLSSNRLSN-SIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMR  682 (869)
Q Consensus       604 ~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  682 (869)
                      ..+..+++|++|++++|.+++ .+|..++.+++|+.|+|++|++++.+|..+.++++|++|+|++|++++.+|..++.++
T Consensus       442 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  521 (606)
T 3vq2_A          442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY  521 (606)
T ss_dssp             TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT
T ss_pred             hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCC
Confidence            888899999999999999988 4788999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEeCCCCCCCCCcchhhhcCC-CCcEEEccCCcccccCCCCc
Q 002896          683 SLEMLNLSHNNLSDFIPRCFEEMN-GLLYIDISYNELHGPIPNST  726 (869)
Q Consensus       683 ~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~~p~~~  726 (869)
                      +|++|++++|+++. +|..+..++ +|+++++++|++.|.|+..+
T Consensus       522 ~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~  565 (606)
T 3vq2_A          522 SLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEHQK  565 (606)
T ss_dssp             TCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSSTTHH
T ss_pred             cCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCccHH
Confidence            99999999999995 666688887 69999999999999998644

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.7e-54  Score=508.87  Aligned_cols=524  Identities=22%  Similarity=0.188  Sum_probs=364.4

Q ss_pred             cCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccC
Q 002896           98 IIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGG  177 (869)
Q Consensus        98 ~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  177 (869)
                      .+|..+.  +++++|+|++|.+++..+..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.+++..|..|++
T Consensus        25 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  102 (606)
T 3vq2_A           25 KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG  102 (606)
T ss_dssp             SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred             cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence            4555554  78999999999999888889999999999999999999888889999999999999999999888999999


Q ss_pred             CCcCceeeccCcccCCCCCCccccccccceeeccccCCCC-CCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCC--
Q 002896          178 LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSG-SIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLD--  254 (869)
Q Consensus       178 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--  254 (869)
                      +++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..|..++.+++|+  
T Consensus       103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~  182 (606)
T 3vq2_A          103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV  182 (606)
T ss_dssp             CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTC
T ss_pred             cccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccc
Confidence            9999999999999998888889999999999999999886 5688899999999999999999887777776665554  


Q ss_pred             --EEEccCCCCCCCCCCCCCCCccCCccccCcccCC-cccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEecc
Q 002896          255 --TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN-GSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELA  331 (869)
Q Consensus       255 --~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~-~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls  331 (869)
                        +|++++|.+++..+..+... +|+.|++++|.+. +..|..+.+++.|+.+++..+.+.+..        .+..    
T Consensus       183 l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--------~l~~----  249 (606)
T 3vq2_A          183 NLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--------NLEI----  249 (606)
T ss_dssp             CCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--------CCSC----
T ss_pred             cceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC--------cccc----
Confidence              79999998886655555544 8888999888876 456677788888888887665543211        1110    


Q ss_pred             CCccccccCCCCcCccccceeec-cCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccc
Q 002896          332 DNELSSSIPHYLGNLTNLAAFYL-YKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGS  410 (869)
Q Consensus       332 ~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  410 (869)
                         +....+..+..+ .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+.. +| .+..+++|++|++++|.+ +.
T Consensus       250 ---~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~  321 (606)
T 3vq2_A          250 ---FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQ  321 (606)
T ss_dssp             ---CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SS
T ss_pred             ---cChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cc
Confidence               011111222222 3555555 55666666655 6667777777777777653 34 666677777777777777 45


Q ss_pred             cChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCccc--CCccccCCCCCcEEecCCCcCcCCCCCcCC
Q 002896          411 IPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV--IPEELGNLVKLTMLTLSDNQLQGSIPNLRN  488 (869)
Q Consensus       411 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~  488 (869)
                      +| .+ .+++|++|++++|...+..  .+..+++|+.|++++|.+++.  .+..+..+++|++|++++|.+.+....+..
T Consensus       322 lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  397 (606)
T 3vq2_A          322 FP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG  397 (606)
T ss_dssp             CC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTT
T ss_pred             cc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccC
Confidence            56 33 6677777777777544332  455667777777777766654  355556666666666666655443334444


Q ss_pred             CCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCC-cCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEE
Q 002896          489 LTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS-SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVI  567 (869)
Q Consensus       489 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L  567 (869)
                      +                        ++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus       398 l------------------------~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  453 (606)
T 3vq2_A          398 L------------------------EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL  453 (606)
T ss_dssp             C------------------------TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             C------------------------CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence            4                        444444444444444444 344555555555555555555555556666666666


Q ss_pred             EccCCcccc-cCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcC
Q 002896          568 DLSANHIIG-KIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQF  646 (869)
Q Consensus       568 ~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  646 (869)
                      ++++|++++ .+|..++.+++|+.|++++|++.+..|..+..+++|++|++++|++++..|..+..+++|+.|+|++|++
T Consensus       454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l  533 (606)
T 3vq2_A          454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI  533 (606)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred             ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence            666666665 3555666666666666666666666666666777777777777777776677777777777777777776


Q ss_pred             Ccccchhhhccc-ccccccccccccCCc
Q 002896          647 IQEIPIKLEKLI-HLSELDLSHNFLGKE  673 (869)
Q Consensus       647 ~~~~p~~l~~l~-~L~~L~Ls~N~l~~~  673 (869)
                      + .+|..+..++ +|++|++++|.+...
T Consensus       534 ~-~~p~~~~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          534 E-TSKGILQHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             C-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred             c-ccCHhHhhhcccCcEEEccCCCcccC
Confidence            5 4555566665 477777777777654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.3e-54  Score=524.76  Aligned_cols=521  Identities=23%  Similarity=0.213  Sum_probs=347.9

Q ss_pred             CCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCC-CcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCce
Q 002896          105 NISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRI-PPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNE  183 (869)
Q Consensus       105 ~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  183 (869)
                      -.++|++|||++|.+++..|..|.++++|++|+|++|...+.+ |.+|+++++|++|+|++|.+.+..|..|+++++|++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            3468889999999888878888888999999999888766666 677888888888888888888877888888888888


Q ss_pred             eeccCcccCCCCCCc--cccccccceeeccccCCCCCCC-ccccCCCCCCEEEccCCcCCCCcccccCCC--CCCCEEEc
Q 002896          184 LALTSNFLKGSIPPS--LGNLTNLAILYLHNNSLSGSIP-SEIGNLKSLSSLALGNNKLCGSIPLFLGNL--TNLDTLYL  258 (869)
Q Consensus       184 L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L  258 (869)
                      |+|++|.+++..|..  ++++++|++|++++|.+.+..+ ..++++++|++|++++|.+++..+..+..+  ++|+.|++
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L  181 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL  181 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence            888888888766554  7778888888888888776544 457777777777777777777767666655  67777777


Q ss_pred             cCCCCCCCCCCCCCCCcc------CCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccC
Q 002896          259 RNNSFSSSIPSEIGNLKS------LSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELAD  332 (869)
Q Consensus       259 ~~n~l~~~~~~~l~~l~~------L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~  332 (869)
                      ++|.+.+..|..+..+++      |+.|++++|.+++..+..+...                     ....+++.+.++.
T Consensus       182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---------------------l~~~~l~~L~l~~  240 (844)
T 3j0a_A          182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA---------------------ISKSQAFSLILAH  240 (844)
T ss_dssp             CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT---------------------SCSCCBSEEECCS
T ss_pred             CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhh---------------------cCcccccceeccc
Confidence            777777666655555443      5555555554444444333211                     0112344444443


Q ss_pred             CccccccCCCCcCccccceeeccCCcCCCCCccccCCC--CCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccc
Q 002896          333 NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNL--KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGS  410 (869)
Q Consensus       333 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  410 (869)
                      +.....               +..+.+.+..+..+.++  ++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+.
T Consensus       241 ~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~  305 (844)
T 3j0a_A          241 HIMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI  305 (844)
T ss_dssp             SCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE
T ss_pred             cccccc---------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC
Confidence            221110               01112222222223332  5667777777766666666666677777777777777666


Q ss_pred             cChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCC
Q 002896          411 IPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLT  490 (869)
Q Consensus       411 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~  490 (869)
                      .+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+    +..++
T Consensus       306 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~----i~~~~  381 (844)
T 3j0a_A          306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT----IHFIP  381 (844)
T ss_dssp             CTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC----CSSCC
T ss_pred             ChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc----ccCCC
Confidence            66666667777777777777766666667777777777777777766666666667777777777766653    22255


Q ss_pred             CCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEcc
Q 002896          491 NLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLS  570 (869)
Q Consensus       491 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls  570 (869)
                      +|+.|++++|.++.. +..   ..+++.|++++|.+++...                       +..+..+++|++|+++
T Consensus       382 ~L~~L~l~~N~l~~l-~~~---~~~l~~L~ls~N~l~~l~~-----------------------~~~~~~l~~L~~L~Ls  434 (844)
T 3j0a_A          382 SIPDIFLSGNKLVTL-PKI---NLTANLIHLSENRLENLDI-----------------------LYFLLRVPHLQILILN  434 (844)
T ss_dssp             SCSEEEEESCCCCCC-CCC---CTTCCEEECCSCCCCSSTT-----------------------HHHHTTCTTCCEEEEE
T ss_pred             CcchhccCCCCcccc-ccc---ccccceeecccCccccCch-----------------------hhhhhcCCccceeeCC
Confidence            556666666655422 111   2344455555554443211                       1123345555555555


Q ss_pred             CCcccccCCc-ccccCcccceeeccCcccc-----ccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCC
Q 002896          571 ANHIIGKIPS-EIGKLSSLIKLILRRNQLF-----GQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN  644 (869)
Q Consensus       571 ~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  644 (869)
                      +|++++..+. .+..+++|+.|++++|.+.     +..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|
T Consensus       435 ~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  514 (844)
T 3j0a_A          435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN  514 (844)
T ss_dssp             SCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC
T ss_pred             CCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCC
Confidence            5555543222 2334566666666666664     344566778889999999999999888888999999999999999


Q ss_pred             cCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCC
Q 002896          645 QFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDF  697 (869)
Q Consensus       645 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  697 (869)
                      ++++..|..+.  ++|+.|+|++|++++.+|+.|   ++|+.|++++|++...
T Consensus       515 ~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~  562 (844)
T 3j0a_A          515 RLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICE  562 (844)
T ss_dssp             CCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCS
T ss_pred             CCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccc
Confidence            99887777666  789999999999999888765   4788999999998864

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.1e-55  Score=519.78  Aligned_cols=501  Identities=21%  Similarity=0.295  Sum_probs=271.8

Q ss_pred             CHHHHHHHHHHHhcCCCCCCCC-------CCCCCCCCCCCCCCCCcc---CceeeCCCCCEEEEeCCCCCcccccCCcCC
Q 002896           34 STEEVHALLKWKTSLQNHDKGS-------LLPSWTLNNATKISPCAW---FGIHCNHVGRVNSINLTNVNQIFGIIPPQI  103 (869)
Q Consensus        34 ~~~~~~~ll~~k~~~~~~~~~~-------~l~~W~~~~~~~~~~c~w---~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l  103 (869)
                      ...|+.||.++++++..+. ..       ..++|+    .+++||.|   .||+|+..|||++|+|++.+ +.|.+|+++
T Consensus        28 ~~~d~~aL~~~~~~~~~~~-w~~~~~~~~~~~~W~----~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~-l~g~lp~~l  101 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKN-WSQQGFGTQPGANWN----FNKELDMWGAQPGVSLNSNGRVTGLSLEGFG-ASGRVPDAI  101 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGG-CCCCC------CCCC----CSSCGGGTTCCTTEEECTTCCEEEEECTTSC-CEEEECGGG
T ss_pred             HHHHHHHHHHHHHHcCCCC-cccCCcCCccCCCCC----CCCCcccccCCCCeEEcCCCCEEEEEecCcc-cCCcCChHH
Confidence            4579999999999985422 21       345898    56899999   99999888999999999999 999999999


Q ss_pred             CCCCCCcEEeCCCCCC------CC------CCCCCCCCCCcCCcccCCCccCCCCCCcccCC-CCCCCEEEcCCCCCCCC
Q 002896          104 GNISKLKYLDLSSNSF------SG------TIPPQIGNLSMLKFLYLSANQFSGRIPPQIGH-LSYIEALHLFKNQLSGP  170 (869)
Q Consensus       104 ~~l~~L~~L~Ls~n~~------~~------~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~-l~~L~~L~L~~n~l~~~  170 (869)
                      +++++|++|+|++|.+      .|      .+|...  +.+|| ++++++.+.+.+|..++. +..+..+++....+.. 
T Consensus       102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~-  177 (636)
T 4eco_A          102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK-  177 (636)
T ss_dssp             GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC-
T ss_pred             hcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc-
Confidence            9999999999999976      22      344433  56677 888888888877776652 2222222322221110 


Q ss_pred             CCccccCCCcCceeecc--CcccCCCCCCccccccccceeeccccCCCCC-----------------CCcccc--CCCCC
Q 002896          171 IPHEVGGLSSLNELALT--SNFLKGSIPPSLGNLTNLAILYLHNNSLSGS-----------------IPSEIG--NLKSL  229 (869)
Q Consensus       171 ~p~~~~~l~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~l~--~l~~L  229 (869)
                           .....++.+.+.  .|++++ +|..++++++|++|++++|.+++.                 +|..++  ++++|
T Consensus       178 -----~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L  251 (636)
T 4eco_A          178 -----SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL  251 (636)
T ss_dssp             -----CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred             -----ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCC
Confidence                 111222222222  345555 555555555555555555555553                 444444  55555


Q ss_pred             CEEEccCCcCCCCcccccCCCCCCCEEEccCCC-CCC-CCCCCCCCC------ccCCccccCcccCCcccCc--cccCCC
Q 002896          230 SSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS-FSS-SIPSEIGNL------KSLSILELGENRLNGSIPL--SLGNLT  299 (869)
Q Consensus       230 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~~~~~~p~--~l~~l~  299 (869)
                      ++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++++      ++|++|++++|+++ .+|.  .+++++
T Consensus       252 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~  330 (636)
T 4eco_A          252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK  330 (636)
T ss_dssp             CEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT
T ss_pred             CEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCC
Confidence            555555555555555555555555555555554 444 444444333      44555555555544 4444  444555


Q ss_pred             CCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccc-cceeeccCCcCCCCCccccCCCC--CCCEE
Q 002896          300 NLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTN-LAAFYLYKNSLSGSIPSEIGNLK--SLSNL  376 (869)
Q Consensus       300 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L  376 (869)
                      +|++|++++|.++|.+| .++.+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..++  +|++|
T Consensus       331 ~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L  407 (636)
T 4eco_A          331 KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAI  407 (636)
T ss_dssp             TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEE
T ss_pred             CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEE
Confidence            55555555555544444 4444455555555555544 34444444544 555555555544 3444443332  45555


Q ss_pred             EccCCcCCCCCCCCCC-------CCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEE
Q 002896          377 DLSENKLSGSIPHSLG-------NLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLA  449 (869)
Q Consensus       377 ~Ls~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  449 (869)
                      ++++|.+++..|..+.       .+++|++|++++|.+.+..+..+..+++|++|++++|+++...+..+....      
T Consensus       408 ~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~------  481 (636)
T 4eco_A          408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN------  481 (636)
T ss_dssp             ECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT------
T ss_pred             ECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc------
Confidence            5555555555554444       444555555555555522222333445555555555555422211111111      


Q ss_pred             ccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcC--CCCCCCEEECcCCcCccccCccccCCCCCCEEeCCC----
Q 002896          450 LYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLR--NLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSH----  523 (869)
Q Consensus       450 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~----  523 (869)
                                 ..+.++++|++|++++|++......+.  .+++|++|++++|.+++ +|..+..+++|++|++++    
T Consensus       482 -----------~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~l  549 (636)
T 4eco_A          482 -----------ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDA  549 (636)
T ss_dssp             -----------EECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCT
T ss_pred             -----------ccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccc
Confidence                       001112255555555555553222333  55666666666666655 455555666666666644    


Q ss_pred             --CcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCccc
Q 002896          524 --NNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHII  575 (869)
Q Consensus       524 --n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  575 (869)
                        |++.+.+|..+..+++|++|++++|++ +.+|..+.  ++|++|++++|++.
T Consensus       550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          550 QGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             ccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence              444555555555555555555555555 34444433  45555555555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.5e-53  Score=505.29  Aligned_cols=484  Identities=20%  Similarity=0.280  Sum_probs=281.3

Q ss_pred             cCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC-CCCCCC--Ccc------------CceeeCCCCCEEEEeCCCCCccc
Q 002896           32 SDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNN-ATKISP--CAW------------FGIHCNHVGRVNSINLTNVNQIF   96 (869)
Q Consensus        32 ~~~~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~-~~~~~~--c~w------------~gv~c~~~~~v~~l~l~~~~~l~   96 (869)
                      ++..+|++||++||+++.+ |      +|+... ....+|  |.|            .||+|+..+||++|+|++.+ +.
T Consensus       265 ~~~~~d~~ALl~~k~~l~~-~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~-L~  336 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALDG-K------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFG-AK  336 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTTG-G------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTC-CE
T ss_pred             ccchHHHHHHHHHHHHcCC-C------CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCC-CC
Confidence            3456899999999999954 2      787211 001355  999            99999988999999999999 99


Q ss_pred             ccCCcCCCCCCCCcEEeC-CCCCCCCCCCCCC------------------------------------------------
Q 002896           97 GIIPPQIGNISKLKYLDL-SSNSFSGTIPPQI------------------------------------------------  127 (869)
Q Consensus        97 ~~~~~~l~~l~~L~~L~L-s~n~~~~~~p~~l------------------------------------------------  127 (869)
                      |.+|+.+++|++|++|+| ++|.++|..|-..                                                
T Consensus       337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~  416 (876)
T 4ecn_A          337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP  416 (876)
T ss_dssp             EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred             CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence            999999999999999999 8887766533210                                                


Q ss_pred             ---CCCCcCCcccCCC--ccCCCCCCcccCCCCCCCEEEcCCCCCCC-----------------CCCcccc--CCCcCce
Q 002896          128 ---GNLSMLKFLYLSA--NQFSGRIPPQIGHLSYIEALHLFKNQLSG-----------------PIPHEVG--GLSSLNE  183 (869)
Q Consensus       128 ---~~l~~L~~L~Ls~--n~~~~~~p~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~  183 (869)
                         .....++.+.+..  |.+++ +|..|+++++|++|+|++|.+++                 .+|..++  ++++|++
T Consensus       417 i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~  495 (876)
T 4ecn_A          417 IKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD  495 (876)
T ss_dssp             CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred             cccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence               1122334444433  56665 67677777777777777777766                 2555544  5555555


Q ss_pred             eeccCcccCCCCCCccccccccceeeccccC-CCC-CCCccccCCC-------CCCEEEccCCcCCCCccc--ccCCCCC
Q 002896          184 LALTSNFLKGSIPPSLGNLTNLAILYLHNNS-LSG-SIPSEIGNLK-------SLSSLALGNNKLCGSIPL--FLGNLTN  252 (869)
Q Consensus       184 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~--~l~~l~~  252 (869)
                      |+|++|.+.+.+|..++++++|++|++++|. +++ .+|..++.++       +|++|++++|.++ .+|.  .++++++
T Consensus       496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~  574 (876)
T 4ecn_A          496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK  574 (876)
T ss_dssp             EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred             EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence            5555555555555555555555555555555 554 4444333332       5555555555555 4454  5555555


Q ss_pred             CCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCC-CCeeecccccccCCCCCcccCCCC--CCeEe
Q 002896          253 LDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTN-LDTLYLYTNSLSGSIPSEIGNLKS--LSGLE  329 (869)
Q Consensus       253 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~-L~~L~L~~n~~~~~~p~~l~~l~~--L~~L~  329 (869)
                      |++|++++|.++ .+| .+.++++|+.|++++|++. .+|..+..+++ |++|++++|.++ .+|..+..++.  |+.|+
T Consensus       575 L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~  650 (876)
T 4ecn_A          575 LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVD  650 (876)
T ss_dssp             CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEE
T ss_pred             CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEE
Confidence            555555555555 444 4555555555555555555 44544555555 555555555554 44444444332  55555


Q ss_pred             ccCCccccccCCCCcCccccceeeccCCcCCCCCccccC--CCCCCCEEEccCCcCCCCCCCC-CCCCCcccEEEccCCc
Q 002896          330 LADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIG--NLKSLSNLDLSENKLSGSIPHS-LGNLTNLAILYLHSNT  406 (869)
Q Consensus       330 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~  406 (869)
                      +++|.+.+.+|...                     ..+.  .+++|+.|++++|.++ .+|.. +..+++|+.|++++|.
T Consensus       651 Ls~N~l~g~ip~l~---------------------~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~  708 (876)
T 4ecn_A          651 FSYNKIGSEGRNIS---------------------CSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNL  708 (876)
T ss_dssp             CCSSCTTTTSSSCS---------------------SCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCC
T ss_pred             CcCCcCCCccccch---------------------hhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCc
Confidence            55555544333211                     0111  1234555555555554 22322 2244555555555555


Q ss_pred             cccccChhh--------hCCCCCCccccCCCcCccccccccc--CCCCCCeEEccCCCCcccCCccccCCCCCcEEecCC
Q 002896          407 LLGSIPREI--------GNLKSLFELQLGDNKLSNSISHSLG--NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD  476 (869)
Q Consensus       407 l~~~~~~~~--------~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  476 (869)
                      +. .+|..+        .++++|++|++++|+++ .+|..+.  .+++|+.|++++|.+++ +|..+..+++|+.|++++
T Consensus       709 L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          709 MT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH  785 (876)
T ss_dssp             CS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred             CC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence            54 333222        22336777777777777 4555565  77777788887777776 566666666666666666


Q ss_pred             CcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCc
Q 002896          477 NQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPP  556 (869)
Q Consensus       477 n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~  556 (869)
                      |+                                         ++++|.+.+.+|..+..+++|+.|++++|++ +.+|.
T Consensus       786 N~-----------------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~  823 (876)
T 4ecn_A          786 QR-----------------------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE  823 (876)
T ss_dssp             CB-----------------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred             CC-----------------------------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence            54                                         2333444444444445555555555555555 44554


Q ss_pred             CcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccc
Q 002896          557 EIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL  598 (869)
Q Consensus       557 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  598 (869)
                      .+.  ++|+.|||++|++....+..+.....+..+.+.+|+.
T Consensus       824 ~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~  863 (876)
T 4ecn_A          824 KLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT  863 (876)
T ss_dssp             CCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred             hhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence            443  3666666666666655444554444555555555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.4e-50  Score=469.72  Aligned_cols=511  Identities=21%  Similarity=0.178  Sum_probs=361.8

Q ss_pred             eeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCC
Q 002896          183 ELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS  262 (869)
Q Consensus       183 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  262 (869)
                      +++.++..++ .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~   87 (570)
T 2z63_A           11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (570)
T ss_dssp             EEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence            3444444444 2333332  356666666666666555566666666666666666665555556666666666666666


Q ss_pred             CCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccC-CCCCcccCCCCCCeEeccCCccccccCC
Q 002896          263 FSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG-SIPSEIGNLKSLSGLELADNELSSSIPH  341 (869)
Q Consensus       263 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~  341 (869)
                      +++..|..|.++++|++|++++|++.+..+..++++++|++|++++|.+++ .+|..++++++|+.|++++|.+++..+.
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~  167 (570)
T 2z63_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (570)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred             CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence            665555566666666666666666654444445566666666666666554 2455555666666666666665555455


Q ss_pred             CCcCcccc----ceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCcccc-ccChhhh
Q 002896          342 YLGNLTNL----AAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLG-SIPREIG  416 (869)
Q Consensus       342 ~l~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~  416 (869)
                      .++.+++|    +.+++++|.+.+..+                        ..+... +|+.|++++|.... .++..+.
T Consensus       168 ~~~~l~~L~~~~~~L~l~~n~l~~~~~------------------------~~~~~~-~L~~L~l~~n~~~~~~~~~~~~  222 (570)
T 2z63_A          168 DLRVLHQMPLLNLSLDLSLNPMNFIQP------------------------GAFKEI-RLHKLTLRNNFDSLNVMKTCIQ  222 (570)
T ss_dssp             GGHHHHTCTTCCCEEECTTCCCCEECT------------------------TTTTTC-EEEEEEEESCCSCTTHHHHHHH
T ss_pred             HccchhccchhhhhcccCCCCceecCH------------------------HHhccC-cceeEecccccccccchhhhhc
Confidence            55555444    445555555544444                        433333 44444444442211 1223333


Q ss_pred             CCCCCCccccCCCcC------cccccccccCCC--CCCeEEccCC-CCcccCCccccCCCCCcEEecCCCcCcCCCCCcC
Q 002896          417 NLKSLFELQLGDNKL------SNSISHSLGNLT--HMTLLALYDN-ALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLR  487 (869)
Q Consensus       417 ~l~~L~~L~Ls~n~l------~~~~~~~l~~l~--~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~  487 (869)
                      .++.++.+.+....+      .......+..++  .++.++++++ .+.+..+..+..+++|++|++++|.+.+..+.+.
T Consensus       223 ~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~  302 (570)
T 2z63_A          223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY  302 (570)
T ss_dssp             TTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCS
T ss_pred             CccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhc
Confidence            444443333221111      111111222222  2456667766 6677778888888888999998888876544666


Q ss_pred             CCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCC--CcCcCCCCCCC
Q 002896          488 NLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSL--PPEIGDSSQLH  565 (869)
Q Consensus       488 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~--p~~l~~l~~L~  565 (869)
                      .+ +|++|++++|.+... |.  ..+++|++|++++|.+.+..+.  ..+++|++|++++|.+++..  |..+..+++|+
T Consensus       303 ~~-~L~~L~l~~n~~~~l-~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~  376 (570)
T 2z63_A          303 NF-GWQHLELVNCKFGQF-PT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK  376 (570)
T ss_dssp             CC-CCSEEEEESCBCSSC-CB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCC
T ss_pred             cC-CccEEeeccCccccc-Cc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccC
Confidence            77 899999999988733 32  4678899999999988776655  67899999999999988654  67788899999


Q ss_pred             EEEccCCcccccCCcccccCcccceeeccCccccccCc-ccccCCccccccccccccccccccccccCCCCCCeeeCcCC
Q 002896          566 VIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLP-SELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN  644 (869)
Q Consensus       566 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  644 (869)
                      +|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|
T Consensus       377 ~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  455 (570)
T 2z63_A          377 YLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN  455 (570)
T ss_dssp             EEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             EEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence            999999999865544 8999999999999999998876 56889999999999999999999999999999999999999


Q ss_pred             cCC-cccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCC
Q 002896          645 QFI-QEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIP  723 (869)
Q Consensus       645 ~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p  723 (869)
                      ++. +.+|..+..+++|++|++++|++++..|..|..+++|++|++++|++++.+|..|..+++|+.|++++|+++|.||
T Consensus       456 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            997 6789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccc
Q 002896          724 NSTAF  728 (869)
Q Consensus       724 ~~~~~  728 (869)
                      ..+.+
T Consensus       536 ~~~~~  540 (570)
T 2z63_A          536 RIDYL  540 (570)
T ss_dssp             TTHHH
T ss_pred             chHHH
Confidence            76544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-48  Score=456.31  Aligned_cols=510  Identities=22%  Similarity=0.212  Sum_probs=299.7

Q ss_pred             cccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccC
Q 002896          135 FLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNS  214 (869)
Q Consensus       135 ~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  214 (869)
                      +++-++..++ .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|++++..+..|+++++|++|++++|.
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~   87 (570)
T 2z63_A           11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (570)
T ss_dssp             EEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence            3444444444 4554442  356666666666665555566666666666666666665555556666666666666666


Q ss_pred             CCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCC-CCCCCCCCCccCCccccCcccCCcccCc
Q 002896          215 LSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGENRLNGSIPL  293 (869)
Q Consensus       215 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~p~  293 (869)
                      +++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|++++..+.
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~  167 (570)
T 2z63_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (570)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred             CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence            655555555566666666666665554443345555555555555555544 2344455555555555555555444444


Q ss_pred             cccCCCCCCeeecccccccCCCCCcccCCCCC-CeEeccCCccccccCCCCcCccccceeeccCCcCCC-CCccccCCCC
Q 002896          294 SLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSL-SGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG-SIPSEIGNLK  371 (869)
Q Consensus       294 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L-~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~  371 (869)
                      .++.+++|+                     .+ +.+++++|.+.+..+..+... +|+.|++++|.... .++..+..++
T Consensus       168 ~~~~l~~L~---------------------~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~  225 (570)
T 2z63_A          168 DLRVLHQMP---------------------LLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLA  225 (570)
T ss_dssp             GGHHHHTCT---------------------TCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTT
T ss_pred             Hccchhccc---------------------hhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCcc
Confidence            444444440                     00 444555555444444444333 45555555443221 1223334444


Q ss_pred             CCCEEEccCCcCC------CCCCCCCCCCC--cccEEEccCC-ccccccChhhhCCCCCCccccCCCcCcccccccccCC
Q 002896          372 SLSNLDLSENKLS------GSIPHSLGNLT--NLAILYLHSN-TLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNL  442 (869)
Q Consensus       372 ~L~~L~Ls~n~l~------~~~~~~l~~l~--~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l  442 (869)
                      .++...+....+.      ......+..++  .++.+++..+ .+.+..+..+..+++|++|++++|.+.+ +|..+..+
T Consensus       226 ~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~  304 (570)
T 2z63_A          226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF  304 (570)
T ss_dssp             TCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC
T ss_pred             ccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC
Confidence            4444433222111      01111122222  2344555555 4444555555555666666666555543 34444444


Q ss_pred             CCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCC
Q 002896          443 THMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLS  522 (869)
Q Consensus       443 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls  522 (869)
                       +|+.|++++|.+. .+|.  ..+++|+.|++++|.+.+..                       +.  ..+++|++|+++
T Consensus       305 -~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~-----------------------~~--~~~~~L~~L~l~  355 (570)
T 2z63_A          305 -GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAF-----------------------SE--VDLPSLEFLDLS  355 (570)
T ss_dssp             -CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBC-----------------------CC--CBCTTCCEEECC
T ss_pred             -CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccc-----------------------cc--ccCCCCCEEeCc
Confidence             5555555555554 2222  23444555555554444333                       22  344455555555


Q ss_pred             CCcccccC--CcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCC-cccccCcccceeeccCcccc
Q 002896          523 HNNFYGQI--SSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIP-SEIGKLSSLIKLILRRNQLF  599 (869)
Q Consensus       523 ~n~l~~~~--~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~  599 (869)
                      +|.+++..  +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..| ..+..+++|++|++++|.+.
T Consensus       356 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  434 (570)
T 2z63_A          356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR  434 (570)
T ss_dssp             SSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred             CCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence            55554332  34445555666666666655543333 6666777777777777766554 35667777777777777777


Q ss_pred             ccCcccccCCcccccccccccccc-ccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhh
Q 002896          600 GQLPSELGSLIQLEYLDLSSNRLS-NSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQI  678 (869)
Q Consensus       600 ~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  678 (869)
                      +..|..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|++|++++|++++.+|..|
T Consensus       435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  514 (570)
T 2z63_A          435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF  514 (570)
T ss_dssp             ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence            777777778888888888888887 5788888999999999999999988888889999999999999999988888889


Q ss_pred             cCCCCCcEEeCCCCCCCCCcch
Q 002896          679 CNMRSLEMLNLSHNNLSDFIPR  700 (869)
Q Consensus       679 ~~l~~L~~L~Ls~N~l~~~~p~  700 (869)
                      ..+++|+.|++++|++++..|.
T Consensus       515 ~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          515 DRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TTCTTCCEEECCSSCBCCCTTT
T ss_pred             hcccCCcEEEecCCcccCCCcc
Confidence            9999999999999999987663

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2e-48  Score=453.17  Aligned_cols=491  Identities=21%  Similarity=0.236  Sum_probs=330.4

Q ss_pred             cceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCc
Q 002896          205 LAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGE  284 (869)
Q Consensus       205 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  284 (869)
                      ..+.+.+++.++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|++++
T Consensus         7 ~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~   83 (549)
T 2z81_A            7 SGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD   83 (549)
T ss_dssp             TSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence            334566666666 4555443  5777777777777766677777777777777777777766667777777777777777


Q ss_pred             ccCCcccCccccCCCCCCeeecccccccC-CCCCcccCCCCCCeEeccCCccccccC-CCCcCccccceeeccCCcCCCC
Q 002896          285 NRLNGSIPLSLGNLTNLDTLYLYTNSLSG-SIPSEIGNLKSLSGLELADNELSSSIP-HYLGNLTNLAAFYLYKNSLSGS  362 (869)
Q Consensus       285 n~~~~~~p~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~  362 (869)
                      |++++..|..++++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+..+++|++|++++|.+++.
T Consensus        84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  163 (549)
T 2z81_A           84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY  163 (549)
T ss_dssp             SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence            77776666667777777777777777765 245566667777777777766433333 4566666666666666666666


Q ss_pred             CccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCcccccc--C-hhhhCCCCCCccccCCCcCcccccccc
Q 002896          363 IPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSI--P-REIGNLKSLFELQLGDNKLSNSISHSL  439 (869)
Q Consensus       363 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l  439 (869)
                      .|..+..+++|++|+++.|.+.......+..+++|++|++++|.+.+..  + .....+++|+.|++++|.+.+..+..+
T Consensus       164 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  243 (549)
T 2z81_A          164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL  243 (549)
T ss_dssp             CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred             ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence            6666666666666666665544221111233455555555555555421  1 111233444455555444443222111


Q ss_pred             cCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCC-------CCcCCCCCCCEEECcCCcCcccc-----C
Q 002896          440 GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSI-------PNLRNLTNLIRLRLNRNHLTCNI-----S  507 (869)
Q Consensus       440 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~l~~l~~L~~L~l~~n~l~~~~-----~  507 (869)
                                          +..+..+++|+.+++++|.+.+..       ..+..+.+++.+++.++.+....     +
T Consensus       244 --------------------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~  303 (549)
T 2z81_A          244 --------------------LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS  303 (549)
T ss_dssp             --------------------HGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCC
T ss_pred             --------------------HHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccch
Confidence                                122233445555555555544321       13445566667776666544321     1


Q ss_pred             ccccCCCCCCEEeCCCCcccccCCcCc-CCCCCCcEEEccCCCCCCCCC---cCcCCCCCCCEEEccCCcccccCC--cc
Q 002896          508 ESFGIHPKLTFIDLSHNNFYGQISSDW-GKCPNLGTFDVSVNNIIGSLP---PEIGDSSQLHVIDLSANHIIGKIP--SE  581 (869)
Q Consensus       508 ~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~~~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l~~~~p--~~  581 (869)
                      ..+...++|+.|++++|.+. .+|..+ ..+++|++|++++|++++.+|   ..++.+++|++|++++|++++..+  ..
T Consensus       304 ~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  382 (549)
T 2z81_A          304 TVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI  382 (549)
T ss_dssp             HHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHH
T ss_pred             hhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhh
Confidence            12334467888888888876 445444 568888888888888887653   346778889999999998875432  45


Q ss_pred             cccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccc
Q 002896          582 IGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLS  661 (869)
Q Consensus       582 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  661 (869)
                      +..+++|++|++++|++. .+|..+..+++|++|++++|++++ +|..+.  ++|++|++++|++++.+    ..+++|+
T Consensus       383 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~  454 (549)
T 2z81_A          383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQ  454 (549)
T ss_dssp             GGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSC--TTCSEEECCSSCCSCCC----CCCTTCC
T ss_pred             hhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhc--CCceEEECCCCChhhhc----ccCChhc
Confidence            778899999999999888 567788888999999999999874 343332  68999999999998764    5788999


Q ss_pred             cccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCcccc
Q 002896          662 ELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFS  729 (869)
Q Consensus       662 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~  729 (869)
                      +|+|++|+++ .+|. ...+++|++|+|++|++++.+|..+..+++|++|++++|+++|.||....+.
T Consensus       455 ~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~  520 (549)
T 2z81_A          455 ELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS  520 (549)
T ss_dssp             EEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHH
T ss_pred             EEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHH
Confidence            9999999997 5665 4689999999999999999999999999999999999999999998544333

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7.4e-48  Score=448.46  Aligned_cols=491  Identities=22%  Similarity=0.212  Sum_probs=341.3

Q ss_pred             CCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCc
Q 002896           70 PCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPP  149 (869)
Q Consensus        70 ~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~  149 (869)
                      .|.|.|+ |+..+         .+ ++ .+|+.+.  ++|++|+|++|.+++..|..|+++++|++|++++|.+.+..|.
T Consensus         3 ~C~~~~~-c~~~~---------~~-l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~   68 (549)
T 2z81_A            3 SCDASGV-CDGRS---------RS-FT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD   68 (549)
T ss_dssp             EECTTSE-EECTT---------SC-CS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred             cCCCCce-EECCC---------Cc-cc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence            4999998 86322         22 32 4565554  7899999999999988888999999999999999999988888


Q ss_pred             ccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCC-CCCCccccccccceeeccccCCCCCCC-ccccCCC
Q 002896          150 QIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG-SIPPSLGNLTNLAILYLHNNSLSGSIP-SEIGNLK  227 (869)
Q Consensus       150 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~  227 (869)
                      .|+++++|++|++++|.+++..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.+++
T Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence            89999999999999999987777778899999999999998876 356677888888888888887444443 4677777


Q ss_pred             CCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCC-CCCCccCCccccCcccCCccc--C-ccccCCCCCCe
Q 002896          228 SLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSE-IGNLKSLSILELGENRLNGSI--P-LSLGNLTNLDT  303 (869)
Q Consensus       228 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~~~~~~--p-~~l~~l~~L~~  303 (869)
                      +|++|++++|.+++..|..++.+++|++|++++|.+.. +|.. +..+++|++|++++|++.+..  | .....+++|+.
T Consensus       149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~  227 (549)
T 2z81_A          149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK  227 (549)
T ss_dssp             EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred             ccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence            77777777777777777777777777777777766542 2222 234566666666666665431  1 11223455666


Q ss_pred             eecccccccCCCC----CcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEcc
Q 002896          304 LYLYTNSLSGSIP----SEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLS  379 (869)
Q Consensus       304 L~L~~n~~~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  379 (869)
                      |++++|.+++..+    ..+..+++|+.+++++|.+.+.....                  ......+..+++|+.|++.
T Consensus       228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~------------------~~~~~~~~~l~~L~~L~l~  289 (549)
T 2z81_A          228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN------------------PSESDVVSELGKVETVTIR  289 (549)
T ss_dssp             EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC------------------CCTTTCCCCCTTCCEEEEE
T ss_pred             eeccccccchhHHHHHHHHhhhhcccccccccccccccccccc------------------ccchhhhhhhccccccccc
Confidence            6666655544322    22234455555555555544321000                  0001123445566666666


Q ss_pred             CCcCCCCC-----CCCCCCCCcccEEEccCCccccccChhh-hCCCCCCccccCCCcCccccc---ccccCCCCCCeEEc
Q 002896          380 ENKLSGSI-----PHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNKLSNSIS---HSLGNLTHMTLLAL  450 (869)
Q Consensus       380 ~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~L~~L~l  450 (869)
                      ++.+....     +..+...++|+.|++++|.+. .+|..+ ..+++|++|++++|++.+..+   ..++.+++|+.|++
T Consensus       290 ~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L  368 (549)
T 2z81_A          290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL  368 (549)
T ss_dssp             SCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEEC
T ss_pred             ccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEc
Confidence            66544211     111122356777777777775 556554 467788888888888777653   23667778888888


Q ss_pred             cCCCCcccCC--ccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccc
Q 002896          451 YDNALSGVIP--EELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG  528 (869)
Q Consensus       451 ~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~  528 (869)
                      ++|.+++..+  ..+..+++|++|++++|++.+....+..+++|++|++++|.++......   .++|++|++++|++++
T Consensus       369 s~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~---~~~L~~L~Ls~N~l~~  445 (549)
T 2z81_A          369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI---PQTLEVLDVSNNNLDS  445 (549)
T ss_dssp             TTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS---CTTCSEEECCSSCCSC
T ss_pred             cCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchh---cCCceEEECCCCChhh
Confidence            8888776532  4577788888888888888754446777888888888888876543222   2578999999998886


Q ss_pred             cCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCc
Q 002896          529 QISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLP  603 (869)
Q Consensus       529 ~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~  603 (869)
                      ..    ..+++|++|++++|+++ .+|. ...+++|++|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus       446 ~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          446 FS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             hc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            53    46889999999999988 5665 4678899999999999998888889999999999999999877655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.7e-48  Score=455.79  Aligned_cols=457  Identities=21%  Similarity=0.299  Sum_probs=324.4

Q ss_pred             CCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccC------CC------CCCcccCCCCCCCEEEcCCCCCCCCCCcc
Q 002896          107 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQF------SG------RIPPQIGHLSYIEALHLFKNQLSGPIPHE  174 (869)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~------~~------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  174 (869)
                      .+++.|+|+++.+.|.+|+++++|++|++|+|++|.+      .|      .+|...  +..|+ ++++.+.+.+.+|..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            4789999999999999999999999999999999976      22      233322  33444 555555555555544


Q ss_pred             ccC-CCcCceeeccCcccCCCCCCccccccccceeecc--ccCCCCCCCccccCCCCCCEEEccCCcCCCC---------
Q 002896          175 VGG-LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH--NNSLSGSIPSEIGNLKSLSSLALGNNKLCGS---------  242 (869)
Q Consensus       175 ~~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---------  242 (869)
                      +.. +..+..+++....+..      .....++.+.+.  .|.+++ +|..++++++|++|++++|.+++.         
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  230 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE  230 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred             HHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence            432 2223333333222211      112233333333  577887 888899999999999999999885         


Q ss_pred             --------cccccC--CCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCccc-CCc-ccCccccCC------CCCCee
Q 002896          243 --------IPLFLG--NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENR-LNG-SIPLSLGNL------TNLDTL  304 (869)
Q Consensus       243 --------~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-~~~-~~p~~l~~l------~~L~~L  304 (869)
                              +|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+      ++|++|
T Consensus       231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L  310 (636)
T 4eco_A          231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII  310 (636)
T ss_dssp             TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred             ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence                    888888  99999999999999999999999999999999999998 887 788877776      889999


Q ss_pred             ecccccccCCCCC--cccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCC-CCEEEccCC
Q 002896          305 YLYTNSLSGSIPS--EIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKS-LSNLDLSEN  381 (869)
Q Consensus       305 ~L~~n~~~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n  381 (869)
                      ++++|.++ .+|.  .++++++|+.|++++|.++|.+| .++.+++|+.|++++|.++ .+|..+..+++ |++|++++|
T Consensus       311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N  387 (636)
T 4eco_A          311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN  387 (636)
T ss_dssp             ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred             ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence            99999988 7887  88899999999999999988888 8888889999999999888 77777888888 888888888


Q ss_pred             cCCCCCCCCCCCCC--cccEEEccCCccccccChhhh-------CCCCCCccccCCCcCcccccccccCCCCCCeEEccC
Q 002896          382 KLSGSIPHSLGNLT--NLAILYLHSNTLLGSIPREIG-------NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYD  452 (869)
Q Consensus       382 ~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~  452 (869)
                      .++ .+|..+..++  +|++|++++|.+.+.+|..+.       .+++|++|++++|+++...+..+..+++|+.|++++
T Consensus       388 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~  466 (636)
T 4eco_A          388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG  466 (636)
T ss_dssp             CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred             cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence            888 6777776544  788888888888777776666       455555566655555533333334455555555555


Q ss_pred             CCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCcccc--CCCCCCEEeCCCCcccccC
Q 002896          453 NALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFG--IHPKLTFIDLSHNNFYGQI  530 (869)
Q Consensus       453 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~ls~n~l~~~~  530 (869)
                      |.++ .+|.....               +..+.+.++++|++|++++|.++ .+|..+.  .+++|++|++++|++++ +
T Consensus       467 N~l~-~i~~~~~~---------------~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-i  528 (636)
T 4eco_A          467 NMLT-EIPKNSLK---------------DENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-F  528 (636)
T ss_dssp             SCCS-BCCSSSSE---------------ETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred             CCCC-CcCHHHhc---------------cccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-c
Confidence            5544 22221100               00001234459999999999999 5666776  89999999999999998 7


Q ss_pred             CcCcCCCCCCcEEEccC------CCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccc
Q 002896          531 SSDWGKCPNLGTFDVSV------NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL  598 (869)
Q Consensus       531 ~~~~~~~~~L~~L~ls~------n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  598 (869)
                      |..+..+++|++|++++      |++.+.+|..+..+++|++|++++|++ +.+|..+.  ++|+.|++++|++
T Consensus       529 p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l  599 (636)
T 4eco_A          529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPN  599 (636)
T ss_dssp             CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTT
T ss_pred             ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCC
Confidence            88888999999999955      445555555555555555555555555 34444433  4444444444443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.2e-45  Score=438.13  Aligned_cols=526  Identities=21%  Similarity=0.202  Sum_probs=324.3

Q ss_pred             CCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccC
Q 002896          146 RIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGN  225 (869)
Q Consensus       146 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  225 (869)
                      .+|..+.  +++++|||++|.+++..|.+|.++++|++|+|++|++++..+.+|.++++|++|+|++|++++..+..|.+
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~  122 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG  122 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred             ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence            5665442  36777777777777665666777777777777777776666666666666666666666666555555666


Q ss_pred             CCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCC-CCCCCCCCCccCCccccCcccCCcccCccccCCCCCCee
Q 002896          226 LKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTL  304 (869)
Q Consensus       226 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L  304 (869)
                      +++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|++++..+..+..+++++. 
T Consensus       123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~-  201 (635)
T 4g8a_A          123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL-  201 (635)
T ss_dssp             CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT-
T ss_pred             CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhh-
Confidence            6666666666666665555556666666666666666553 23444555555555555555555544444433322221 


Q ss_pred             ecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCC-CccccCCCCCCCEEEccCCc-
Q 002896          305 YLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGS-IPSEIGNLKSLSNLDLSENK-  382 (869)
Q Consensus       305 ~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-  382 (869)
                                         ....++++.|.+....+..+. ...++.+++.+|..... .+..+..++.++...+..+. 
T Consensus       202 -------------------~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~  261 (635)
T 4g8a_A          202 -------------------LNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF  261 (635)
T ss_dssp             -------------------CCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred             -------------------hhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence                               112344444444433332222 22344445544433321 12223344444444332221 


Q ss_pred             -----CCCCCCCCCCCCCcccEEEccCCcccc---ccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCC
Q 002896          383 -----LSGSIPHSLGNLTNLAILYLHSNTLLG---SIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNA  454 (869)
Q Consensus       383 -----l~~~~~~~l~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~  454 (869)
                           +.......+..+..+....+..+....   ..+..+..+.+++.+++.++.+....  .+.....++.|++.+|.
T Consensus       262 ~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~  339 (635)
T 4g8a_A          262 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCK  339 (635)
T ss_dssp             TTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCE
T ss_pred             ccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhccccc
Confidence                 111222233334444444443332211   12233344445555555555443322  13334445555555554


Q ss_pred             CcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccc--cCCc
Q 002896          455 LSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG--QISS  532 (869)
Q Consensus       455 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~--~~~~  532 (869)
                      +.+..+.                          .+..|+.+++..|......  .+..+++|+.+++++|.+..  ..+.
T Consensus       340 ~~~~~~~--------------------------~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~  391 (635)
T 4g8a_A          340 FGQFPTL--------------------------KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQ  391 (635)
T ss_dssp             ESSCCCC--------------------------BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCH
T ss_pred             ccCcCcc--------------------------cchhhhhcccccccCCCCc--ccccccccccchhhcccccccccccc
Confidence            4433221                          2333444444444332221  22344555555555555532  2333


Q ss_pred             CcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCC-cccccCcccceeeccCccccccCcccccCCcc
Q 002896          533 DWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIP-SEIGKLSSLIKLILRRNQLFGQLPSELGSLIQ  611 (869)
Q Consensus       533 ~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  611 (869)
                      .+..+.+|+.+++..|.... .+..+..+++|+.+++++|+.....+ ..+..+++++.++++.|.+.+..+..+..+++
T Consensus       392 ~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~  470 (635)
T 4g8a_A          392 SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS  470 (635)
T ss_dssp             HHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred             chhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchh
Confidence            34455666666666665543 33456667777777777776665444 34667888888888888888888888888999


Q ss_pred             ccccccccccc-cccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCC
Q 002896          612 LEYLDLSSNRL-SNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLS  690 (869)
Q Consensus       612 L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  690 (869)
                      |++|++++|.+ .+..|..|..+++|++|||++|++++.+|..|.++++|++|+|++|+|++..|..|..+++|++|||+
T Consensus       471 L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls  550 (635)
T 4g8a_A          471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS  550 (635)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECT
T ss_pred             hhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECC
Confidence            99999999875 44678889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcchhhhcC-CCCcEEEccCCcccccCCCC
Q 002896          691 HNNLSDFIPRCFEEM-NGLLYIDISYNELHGPIPNS  725 (869)
Q Consensus       691 ~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~~p~~  725 (869)
                      +|+|++.+|..|..+ ++|++|++++|||+|.|...
T Consensus       551 ~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~  586 (635)
T 4g8a_A          551 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ  586 (635)
T ss_dssp             TSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred             CCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence            999999999999988 68999999999999999743

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1e-46  Score=435.49  Aligned_cols=460  Identities=21%  Similarity=0.196  Sum_probs=334.4

Q ss_pred             CEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccc
Q 002896          230 SSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTN  309 (869)
Q Consensus       230 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n  309 (869)
                      +++++++|.++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|++++|
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            57888888888 5666655  78888888888888777677888888888888888888777888888888888888888


Q ss_pred             cccCCCCCcccCCCCCCeEeccCCcccc-ccCCCCcCccccceeeccCCcCCCCCccccCCCCCC--CEEEccCCcC--C
Q 002896          310 SLSGSIPSEIGNLKSLSGLELADNELSS-SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL--SNLDLSENKL--S  384 (869)
Q Consensus       310 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~Ls~n~l--~  384 (869)
                      .++ .+|..  .+++|++|++++|.+++ .+|..++.+++|++|++++|.+++   ..+..+++|  ++|++++|.+  .
T Consensus        80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence            887 45554  77888888888888877 467778888888888888888775   345666677  8888888887  6


Q ss_pred             CCCCCCCCCCC-cccEEEccCCccccccC-hhhhCCCCCCccccCCCc-------CcccccccccCCCCCCeEEccCCCC
Q 002896          385 GSIPHSLGNLT-NLAILYLHSNTLLGSIP-REIGNLKSLFELQLGDNK-------LSNSISHSLGNLTHMTLLALYDNAL  455 (869)
Q Consensus       385 ~~~~~~l~~l~-~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~-------l~~~~~~~l~~l~~L~~L~l~~n~l  455 (869)
                      +..|..+..+. ....+++++|.+.+.++ ..+..+++|+.+++++|.       +.+.++ .+..+++|+.|++++|.+
T Consensus       154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l  232 (520)
T 2z7x_B          154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET  232 (520)
T ss_dssp             SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred             ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence            67777766654 23355666776665444 345666777777777765       444444 455666666666666655


Q ss_pred             cccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccc-----cCCCCCCEEeCCCCcccccC
Q 002896          456 SGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESF-----GIHPKLTFIDLSHNNFYGQI  530 (869)
Q Consensus       456 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~ls~n~l~~~~  530 (869)
                      ++..+..+..                    ....++|++|++++|.+++.+|..+     ..+++|+.+++++|.+  .+
T Consensus       233 ~~~~~~~~~~--------------------~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~  290 (520)
T 2z7x_B          233 TWNSFIRILQ--------------------LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GF  290 (520)
T ss_dssp             EHHHHHHHHH--------------------HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CS
T ss_pred             CHHHHHHHHH--------------------HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ec
Confidence            5432211110                    0012345555555555554444444     5556666666666665  23


Q ss_pred             C-cCcCCC---CCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccc--cCcc
Q 002896          531 S-SDWGKC---PNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFG--QLPS  604 (869)
Q Consensus       531 ~-~~~~~~---~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~~~  604 (869)
                      | ..+..+   .+|+.|++++|.+.+..  ....+++|++|++++|++++.+|..++.+++|++|++++|++.+  .+|.
T Consensus       291 p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~  368 (520)
T 2z7x_B          291 PQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE  368 (520)
T ss_dssp             CTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHH
T ss_pred             chhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchH
Confidence            3 222222   45777777777665432  12567778888888888887777778888888888888888876  4567


Q ss_pred             cccCCccccccccccccccccccc-cccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCC
Q 002896          605 ELGSLIQLEYLDLSSNRLSNSIPR-SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRS  683 (869)
Q Consensus       605 ~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  683 (869)
                      .+..+++|++|++++|.+++.+|. .+..+++|+.|++++|++++.+|..+.  ++|++|++++|+++ .+|..+..+++
T Consensus       369 ~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~  445 (520)
T 2z7x_B          369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEA  445 (520)
T ss_dssp             HHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred             HHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCC
Confidence            788889999999999999885554 488899999999999999888877664  78999999999997 77887789999


Q ss_pred             CcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCc
Q 002896          684 LEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNST  726 (869)
Q Consensus       684 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~  726 (869)
                      |++|++++|++++..+..+..+++|++|++++|+++|.|+..+
T Consensus       446 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~  488 (520)
T 2z7x_B          446 LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  488 (520)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred             CCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchH
Confidence            9999999999997555559999999999999999999988543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.3e-46  Score=445.26  Aligned_cols=465  Identities=18%  Similarity=0.214  Sum_probs=328.3

Q ss_pred             CCCCEEEccCCcCCCCcccccCCCCCCCEEEc-cCCCCCCCCCCCCCCC----cc--CCcccc----------CcccCCc
Q 002896          227 KSLSSLALGNNKLCGSIPLFLGNLTNLDTLYL-RNNSFSSSIPSEIGNL----KS--LSILEL----------GENRLNG  289 (869)
Q Consensus       227 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~l~~l----~~--L~~L~L----------~~n~~~~  289 (869)
                      ..++.|+|+++.+.|.+|..++++++|++|+| ++|.++|..|......    ..  ++.+..          ....+.+
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            35677777777777777777777777777777 6666655432111000    00  000000          0000000


Q ss_pred             c-----------cCccccCCCCCCeeeccc--ccccCCCCCcccCCCCCCeEeccCCcccc-----------------cc
Q 002896          290 S-----------IPLSLGNLTNLDTLYLYT--NSLSGSIPSEIGNLKSLSGLELADNELSS-----------------SI  339 (869)
Q Consensus       290 ~-----------~p~~l~~l~~L~~L~L~~--n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~-----------------~~  339 (869)
                      .           .+........++.+.+..  |.+++ +|..++++++|+.|++++|.+++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence            0           000011222333333333  55655 56666666666666666666666                 37


Q ss_pred             CCCCc--CccccceeeccCCcCCCCCccccCCCCCCCEEEccCCc-CCC-CCCCCCC-------CCCcccEEEccCCccc
Q 002896          340 PHYLG--NLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENK-LSG-SIPHSLG-------NLTNLAILYLHSNTLL  408 (869)
Q Consensus       340 ~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~l~-------~l~~L~~L~L~~n~l~  408 (869)
                      |..++  ++++|+.|++++|.+.+.+|..+.++++|+.|++++|+ +++ .+|..++       .+++|+.|++++|.+.
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            77766  78888888888888888888888888888888888887 776 6665444       3448888888888887


Q ss_pred             cccCh--hhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCC-CcEEecCCCcCcCCCCC
Q 002896          409 GSIPR--EIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVK-LTMLTLSDNQLQGSIPN  485 (869)
Q Consensus       409 ~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~  485 (869)
                       .+|.  .+..+++|++|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+......
T Consensus       562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~  637 (876)
T 4ecn_A          562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNI  637 (876)
T ss_dssp             -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSC
T ss_pred             -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchh
Confidence             6777  7888888888888888887 566 7788888888888888887 67777888887 88888888888733324


Q ss_pred             cCCCC--CCCEEECcCCcCccccCccc---c--CCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCc
Q 002896          486 LRNLT--NLIRLRLNRNHLTCNISESF---G--IHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEI  558 (869)
Q Consensus       486 l~~l~--~L~~L~l~~n~l~~~~~~~~---~--~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l  558 (869)
                      +..++  +|+.|++++|.+.+.+|...   .  ..++|+.|++++|.++...+..+..+++|+.|++++|++. .+|..+
T Consensus       638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  716 (876)
T 4ecn_A          638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENS  716 (876)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred             hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence            44443  38888888888877655322   2  3357889999999888443334457889999999999888 566544


Q ss_pred             CC--------CCCCCEEEccCCcccccCCcccc--cCcccceeeccCccccccCcccccCCccccccccccccccccccc
Q 002896          559 GD--------SSQLHVIDLSANHIIGKIPSEIG--KLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPR  628 (869)
Q Consensus       559 ~~--------l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  628 (869)
                      ..        +++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++.+ +|..+..+++|+.|+|++|+       
T Consensus       717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~-------  787 (876)
T 4ecn_A          717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR-------  787 (876)
T ss_dssp             SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-------
T ss_pred             hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-------
Confidence            33        338999999999998 7788886  88888888888888887 67777788888888888876       


Q ss_pred             cccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCC
Q 002896          629 SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGL  708 (869)
Q Consensus       629 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  708 (869)
                                 ++++|++.+.+|..+.++++|+.|+|++|++ +.+|..+.  ++|+.|||++|++....+..+.....+
T Consensus       788 -----------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~  853 (876)
T 4ecn_A          788 -----------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEA  853 (876)
T ss_dssp             -----------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHT
T ss_pred             -----------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccc
Confidence                       6677888888888888888888888888888 77777755  689999999999988877777766667


Q ss_pred             cEEEccCCcccc
Q 002896          709 LYIDISYNELHG  720 (869)
Q Consensus       709 ~~L~ls~N~l~g  720 (869)
                      ..+.+.+|++..
T Consensus       854 ~~~~L~~n~~~~  865 (876)
T 4ecn_A          854 GMYVLLYDKTQD  865 (876)
T ss_dssp             TCCEEECCTTSE
T ss_pred             hheeecCCCccc
Confidence            777888887764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.7e-44  Score=428.23  Aligned_cols=564  Identities=23%  Similarity=0.205  Sum_probs=369.2

Q ss_pred             cCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccC
Q 002896           98 IIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGG  177 (869)
Q Consensus        98 ~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  177 (869)
                      .+|+.+.  +++++|||++|.+++..+.+|.++++|++|+|++|.+++..|.+|+++++|++|+|++|++++..+..|.+
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~  122 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG  122 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred             ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence            3555543  47999999999999877889999999999999999999877889999999999999999999777778999


Q ss_pred             CCcCceeeccCcccCCCCCCccccccccceeeccccCCCC-CCCccccCCCCCCEEEccCCcCCCCcccccCCCCC----
Q 002896          178 LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSG-SIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTN----  252 (869)
Q Consensus       178 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~----  252 (869)
                      +++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+..+..+.+    
T Consensus       123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~  202 (635)
T 4g8a_A          123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL  202 (635)
T ss_dssp             CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred             CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence            9999999999999998888889999999999999999976 46788899999999999999999888877765444    


Q ss_pred             CCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcc-cCccccCCCCCCeeecccccccC------CCCCcccCCCCC
Q 002896          253 LDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGS-IPLSLGNLTNLDTLYLYTNSLSG------SIPSEIGNLKSL  325 (869)
Q Consensus       253 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~p~~l~~l~~L~~L~L~~n~~~~------~~p~~l~~l~~L  325 (869)
                      ...++++.|.+....+..+ ....++.+++.+|..... .+..+..+..++...+..+....      .....+..+..+
T Consensus       203 ~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l  281 (635)
T 4g8a_A          203 NLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL  281 (635)
T ss_dssp             CCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred             hhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence            3478888888875554444 444567788887765432 23345667777766655433221      111222333333


Q ss_pred             CeEeccCCcccc---ccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEc
Q 002896          326 SGLELADNELSS---SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYL  402 (869)
Q Consensus       326 ~~L~Ls~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  402 (869)
                      ...++..+....   ..+..+..+.+++.+.+.++.+....  .+....+++.|++.+|.+.+..+.   .++.|+.+++
T Consensus       282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l  356 (635)
T 4g8a_A          282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTF  356 (635)
T ss_dssp             EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEE
T ss_pred             hhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---cchhhhhccc
Confidence            333333222111   12223334444555555554443321  233344555555555554433221   2334444444


Q ss_pred             cCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcc--cCCccccCCCCCcEEecCCCcCc
Q 002896          403 HSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSG--VIPEELGNLVKLTMLTLSDNQLQ  480 (869)
Q Consensus       403 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~  480 (869)
                      ..|...                        ...  ....+++|+.+++++|.+..  ..+..+..+.+|+.+++..+...
T Consensus       357 ~~n~~~------------------------~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~  410 (635)
T 4g8a_A          357 TSNKGG------------------------NAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI  410 (635)
T ss_dssp             ESCCSC------------------------CBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE
T ss_pred             ccccCC------------------------CCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc
Confidence            444433                        211  12234455555555554432  23344445555666666666555


Q ss_pred             CCCCCcCCCCCCCEEECcCCcCcccc-CccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCC-CCCCcCc
Q 002896          481 GSIPNLRNLTNLIRLRLNRNHLTCNI-SESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNII-GSLPPEI  558 (869)
Q Consensus       481 ~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~-~~~p~~l  558 (869)
                      ...+.+..+++|+.+++..+...... ...|..+++++.++++.|.+.+..+..+..+++++.|++++|.+. +..|..+
T Consensus       411 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~  490 (635)
T 4g8a_A          411 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF  490 (635)
T ss_dssp             EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred             cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhh
Confidence            54445566666666666666544333 345666777777777777777777777777777777777777643 3466777


Q ss_pred             CCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCC-CCCC
Q 002896          559 GDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNL-VKLH  637 (869)
Q Consensus       559 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~  637 (869)
                      ..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|||++|++++..|..+..+ ++|+
T Consensus       491 ~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~  570 (635)
T 4g8a_A          491 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA  570 (635)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred             hhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence            888888888888888888778888888888888888888888888888888888888888888888888888887 6788


Q ss_pred             eeeCcCCcCCcccc-hhhhc-ccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCC
Q 002896          638 YLNLSTNQFIQEIP-IKLEK-LIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDF  697 (869)
Q Consensus       638 ~L~Ls~N~l~~~~p-~~l~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  697 (869)
                      .|+|++|++.-... .+|.. +..-.........+.-.-|..+.+ ..+..+|++ |+++|-
T Consensus       571 ~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g-~~l~~~~~~-C~~~g~  630 (635)
T 4g8a_A          571 FLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG-MPVLSLNIT-CQMTGH  630 (635)
T ss_dssp             EEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTT-CBGGGCCCC-C-----
T ss_pred             EEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCC-CEeeeeccC-CCCCCC
Confidence            88888888864322 11211 111111111112233334555544 345566764 777774

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.9e-45  Score=424.91  Aligned_cols=457  Identities=20%  Similarity=0.198  Sum_probs=302.2

Q ss_pred             ceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCC
Q 002896          182 NELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNN  261 (869)
Q Consensus       182 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  261 (869)
                      ++|++++|.++. +|..+.  ++|++|++++|.+++..|..+.++++|++|++++|++++..|..|+++++|++|++++|
T Consensus         3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            456666666663 444443  56666666666666555556666666666666666666555666666666666666666


Q ss_pred             CCCCCCCCCCCCCccCCccccCcccCCc-ccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccC
Q 002896          262 SFSSSIPSEIGNLKSLSILELGENRLNG-SIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIP  340 (869)
Q Consensus       262 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~  340 (869)
                      +++ .+|..  .+++|++|++++|++++ .+|..++++++|++|++++|.+++   ..+..+++|               
T Consensus        80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L---------------  138 (520)
T 2z7x_B           80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHL---------------  138 (520)
T ss_dssp             CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTS---------------
T ss_pred             cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccc---------------
Confidence            665 34433  45555555555555554 244555555555555555555543   123333444               


Q ss_pred             CCCcCccccceeeccCCcC--CCCCccccCCCC-CCCEEEccCCcCCCCCC-CCCCCCCcccEEEccCCc-------ccc
Q 002896          341 HYLGNLTNLAAFYLYKNSL--SGSIPSEIGNLK-SLSNLDLSENKLSGSIP-HSLGNLTNLAILYLHSNT-------LLG  409 (869)
Q Consensus       341 ~~l~~l~~L~~L~L~~n~l--~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~-------l~~  409 (869)
                             +|+.|++++|.+  .+..|..+..+. ....+++++|.+.+.++ ..+..+++|+.+++++|.       +.+
T Consensus       139 -------~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  211 (520)
T 2z7x_B          139 -------NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS  211 (520)
T ss_dssp             -------CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH
T ss_pred             -------eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec
Confidence                   115555555555  444444444333 12234555665554433 345567777777777776       555


Q ss_pred             ccChhhhCCCCCCccccCCCcCccccccccc---CCCCCCeEEccCCCCcccCCccc-----cCCCCCcEEecCCCcCcC
Q 002896          410 SIPREIGNLKSLFELQLGDNKLSNSISHSLG---NLTHMTLLALYDNALSGVIPEEL-----GNLVKLTMLTLSDNQLQG  481 (869)
Q Consensus       410 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~  481 (869)
                      .++ .+..+++|+.|++++|.+++..+..+.   ..++|+.|++++|.+++.+|..+     ..+++|+.+++++|.+  
T Consensus       212 ~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--  288 (520)
T 2z7x_B          212 ILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--  288 (520)
T ss_dssp             HHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--
T ss_pred             chh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--
Confidence            444 677778888888887777653322211   23577888888887777777765     5555555555555544  


Q ss_pred             CCCCcCCCCCCCEEECcCCcCccccCccccCC---CCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCc
Q 002896          482 SIPNLRNLTNLIRLRLNRNHLTCNISESFGIH---PKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEI  558 (869)
Q Consensus       482 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l  558 (869)
                      .+|                      ...+..+   .+|+.|++++|.+.+..  .+..+++|++|++++|++++.+|..+
T Consensus       289 ~~p----------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~  344 (520)
T 2z7x_B          289 GFP----------------------QSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC  344 (520)
T ss_dssp             CSC----------------------THHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred             ecc----------------------hhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh
Confidence            111                      1122111   35666666666654322  12567788888888888888788888


Q ss_pred             CCCCCCCEEEccCCcccc--cCCcccccCcccceeeccCccccccCcc-cccCCccccccccccccccccccccccCCCC
Q 002896          559 GDSSQLHVIDLSANHIIG--KIPSEIGKLSSLIKLILRRNQLFGQLPS-ELGSLIQLEYLDLSSNRLSNSIPRSLGNLVK  635 (869)
Q Consensus       559 ~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  635 (869)
                      ..+++|++|++++|++++  .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++..|..+.  ++
T Consensus       345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~  422 (520)
T 2z7x_B          345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PR  422 (520)
T ss_dssp             CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TT
T ss_pred             ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--cc
Confidence            888888888888888886  5667788889999999999999885554 478889999999999999988887765  79


Q ss_pred             CCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcc
Q 002896          636 LHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP  699 (869)
Q Consensus       636 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  699 (869)
                      |+.|++++|+++ .+|..+..+++|++|+|++|+++...+..+..+++|++|++++|++++..+
T Consensus       423 L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          423 IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            999999999997 788888899999999999999985444459999999999999999998654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.4e-43  Score=412.64  Aligned_cols=465  Identities=21%  Similarity=0.185  Sum_probs=310.2

Q ss_pred             CCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeee
Q 002896          226 LKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLY  305 (869)
Q Consensus       226 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~  305 (869)
                      +...+++++++|.+++ +|..+.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|+
T Consensus        30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            3345788888888874 665543  6788888888888776667777788888888888877777777777777788888


Q ss_pred             cccccccCCCCCcccCCCCCCeEeccCCccccc-cCCCCcCccccceeeccCCcCCCCCccccCCCCCC--CEEEccCCc
Q 002896          306 LYTNSLSGSIPSEIGNLKSLSGLELADNELSSS-IPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL--SNLDLSENK  382 (869)
Q Consensus       306 L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~Ls~n~  382 (869)
                      +++|.++ .+|..  .+++|++|++++|.+++. .|..++++++|++|++++|.+++.   .+..+++|  ++|++++|.
T Consensus       107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred             CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence            8777776 45544  677777777777777763 356677777777777777776653   23334444  777777776


Q ss_pred             C--CCCCCCCCCCCC--cccEEEccCCccccccCh-hhhCCCCCCccccCCCcCc----ccccccccCCCCCCeEEccCC
Q 002896          383 L--SGSIPHSLGNLT--NLAILYLHSNTLLGSIPR-EIGNLKSLFELQLGDNKLS----NSISHSLGNLTHMTLLALYDN  453 (869)
Q Consensus       383 l--~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~l~~n  453 (869)
                      +  ++..|..+..+.  .+ .++++.|.+.+.++. .+..+++|+.+++++|+..    ......+..+++|+.+++.++
T Consensus       181 l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~  259 (562)
T 3a79_B          181 YHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI  259 (562)
T ss_dssp             CCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred             ccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence            6  666665555433  22 345555555543332 2344555555555555311    001122344444444444444


Q ss_pred             CCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccc-----cCCCCCCEEeCCCCcccc
Q 002896          454 ALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESF-----GIHPKLTFIDLSHNNFYG  528 (869)
Q Consensus       454 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~ls~n~l~~  528 (869)
                      .+.+....                   +.. .....++|++|++++|.+++.+|..+     ..++.|+.++++.+.+  
T Consensus       260 ~l~~~~~~-------------------~~~-~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--  317 (562)
T 3a79_B          260 ETTWKCSV-------------------KLF-QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--  317 (562)
T ss_dssp             EECHHHHH-------------------HHH-HHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--
T ss_pred             cCcHHHHH-------------------HHH-HhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--
Confidence            33321100                   000 11112355555665555555555444     3444444444444444  


Q ss_pred             cCCc-CcC---CCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCcccccc--C
Q 002896          529 QISS-DWG---KCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQ--L  602 (869)
Q Consensus       529 ~~~~-~~~---~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~  602 (869)
                      .+|. .+.   ...+|++|++++|.+....  ....+++|++|++++|++++.+|..++++++|++|++++|++.+.  .
T Consensus       318 ~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  395 (562)
T 3a79_B          318 LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV  395 (562)
T ss_dssp             SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHH
T ss_pred             ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccc
Confidence            2221 111   1246778888877765322  125677888888888888888888888888888888888888874  3


Q ss_pred             cccccCCccccccccccccccccccc-cccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCC
Q 002896          603 PSELGSLIQLEYLDLSSNRLSNSIPR-SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNM  681 (869)
Q Consensus       603 ~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  681 (869)
                      |..+..+++|++|++++|++++.+|. .+..+++|+.|++++|++++.+|..+.  ++|++|+|++|+++ .+|..+..+
T Consensus       396 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l  472 (562)
T 3a79_B          396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHL  472 (562)
T ss_dssp             HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSS
T ss_pred             hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCC
Confidence            56788899999999999999884554 588899999999999999887776654  78999999999996 677777799


Q ss_pred             CCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCcc
Q 002896          682 RSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTA  727 (869)
Q Consensus       682 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~~  727 (869)
                      ++|++|+|++|++++..+..+..+++|+++++++|+++|.||..+.
T Consensus       473 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~  518 (562)
T 3a79_B          473 QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY  518 (562)
T ss_dssp             CCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred             CCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence            9999999999999975555599999999999999999999985543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.9e-42  Score=398.32  Aligned_cols=455  Identities=20%  Similarity=0.205  Sum_probs=282.8

Q ss_pred             ceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcc
Q 002896          206 AILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN  285 (869)
Q Consensus       206 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  285 (869)
                      +++++++|.+++ +|..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus        34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            444444444442 333332  44555555555555444445555555555555555555444555555555555555555


Q ss_pred             cCCcccCccccCCCCCCeeecccccccC-CCCCcccCCCCCCeEeccCCccccccCCCCcCcccc--ceeeccCCcC--C
Q 002896          286 RLNGSIPLSLGNLTNLDTLYLYTNSLSG-SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNL--AAFYLYKNSL--S  360 (869)
Q Consensus       286 ~~~~~~p~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~  360 (869)
                      +++ .+|..  .+++|++|++++|.+++ .+|..++++++|+.|++++|.+++.   .+..+++|  +.|++++|.+  +
T Consensus       111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~  184 (562)
T 3a79_B          111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK  184 (562)
T ss_dssp             CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred             cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence            554 33333  45555555555555554 2344555555566666655555542   23333333  6666666666  5


Q ss_pred             CCCccccCCCC--CCCEEEccCCcCCCCCCC-CCCCCCcccEEEccCCccc----cccChhhhCCCCCCccccCCCcCcc
Q 002896          361 GSIPSEIGNLK--SLSNLDLSENKLSGSIPH-SLGNLTNLAILYLHSNTLL----GSIPREIGNLKSLFELQLGDNKLSN  433 (869)
Q Consensus       361 ~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~  433 (869)
                      +..|..+..+.  .+ .+++++|.+.+.++. .+..+++|+.+++++|...    ......+..++.|+.++++++.+.+
T Consensus       185 ~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~  263 (562)
T 3a79_B          185 GGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW  263 (562)
T ss_dssp             SSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred             ccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence            55555554433  22 446666666554432 3456777888888777421    1122456777888888887776654


Q ss_pred             ccccc---ccCCCCCCeEEccCCCCcccCCccc-----cCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccc
Q 002896          434 SISHS---LGNLTHMTLLALYDNALSGVIPEEL-----GNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCN  505 (869)
Q Consensus       434 ~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~  505 (869)
                      .....   ....++|++|++++|.+++.+|..+     ..++.|+.++++.+.+  .+|                     
T Consensus       264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p---------------------  320 (562)
T 3a79_B          264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFS---------------------  320 (562)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSC---------------------
T ss_pred             HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecC---------------------
Confidence            32111   1123477788888887777777655     3333333333333332  111                     


Q ss_pred             cCcccc---CCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccc--cCCc
Q 002896          506 ISESFG---IHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIG--KIPS  580 (869)
Q Consensus       506 ~~~~~~---~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~  580 (869)
                       ...+.   ...+|++|++++|.+....  ....+++|++|++++|++++.+|..+..+++|++|++++|++++  .+|.
T Consensus       321 -~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  397 (562)
T 3a79_B          321 -KEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL  397 (562)
T ss_dssp             -HHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHH
T ss_pred             -hhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchh
Confidence             01111   1245666777766664322  12567778888888888887778888888888888888888876  3345


Q ss_pred             ccccCcccceeeccCccccccCc-ccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccc
Q 002896          581 EIGKLSSLIKLILRRNQLFGQLP-SELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIH  659 (869)
Q Consensus       581 ~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  659 (869)
                      .+.++++|+.|++++|++.+.+| ..+..+++|++|++++|++++..|..+.  ++|+.|+|++|+++ .+|..+..+++
T Consensus       398 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~  474 (562)
T 3a79_B          398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQA  474 (562)
T ss_dssp             TTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCC
T ss_pred             hhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCC
Confidence            67788888888888888887444 4577889999999999999887776665  78999999999987 67777779999


Q ss_pred             cccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcc
Q 002896          660 LSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP  699 (869)
Q Consensus       660 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  699 (869)
                      |++|+|++|++++..+..+..+++|+.|++++|++++..+
T Consensus       475 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          475 LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            9999999999985444448999999999999999998654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=8.3e-42  Score=365.76  Aligned_cols=292  Identities=31%  Similarity=0.566  Sum_probs=210.9

Q ss_pred             cCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCc--cCceeeCCC---CCEEEEeCCCCCcccc--cCCcCCC
Q 002896           32 SDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCA--WFGIHCNHV---GRVNSINLTNVNQIFG--IIPPQIG  104 (869)
Q Consensus        32 ~~~~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~~~~~~~c~--w~gv~c~~~---~~v~~l~l~~~~~l~~--~~~~~l~  104 (869)
                      .|.++|++||++||+++.+ | . .+++|.    .+++||.  |.||+|+..   ++|+.+++++.. +.|  .+|+.++
T Consensus         2 ~c~~~~~~aL~~~k~~~~~-~-~-~l~~W~----~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~-l~~~~~~~~~l~   73 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGN-P-T-TLSSWL----PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN-LPKPYPIPSSLA   73 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTC-C-G-GGTTCC----TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCC-CSSCEECCGGGG
T ss_pred             CCCHHHHHHHHHHHHhcCC-c-c-cccCCC----CCCCCCcCCCcceEeCCCCCCceEEEEECCCCC-ccCCcccChhHh
Confidence            5889999999999999964 4 3 689997    5678998  999999853   789999998887 888  7888888


Q ss_pred             CCCCCcEEeCCC-CCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCce
Q 002896          105 NISKLKYLDLSS-NSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNE  183 (869)
Q Consensus       105 ~l~~L~~L~Ls~-n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  183 (869)
                      ++++|++|+|++ |.+.+.+|..|+++++|++|+|++|.+.+.+|..|+++++|++|++++|.+++.+|..++++++|++
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  153 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence            888888888885 8888888888888888888888888888788888888888888888888887777777777777777


Q ss_pred             eeccCcccCCCCCCcccccc-ccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCC
Q 002896          184 LALTSNFLKGSIPPSLGNLT-NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS  262 (869)
Q Consensus       184 L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  262 (869)
                      |++++|++++.+|..+++++ +|++|++++|.+++.+|..+..++ |++|++++|.+++..|..+..+++|++|++++|.
T Consensus       154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  232 (313)
T 1ogq_A          154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence            77777777777777777776 777777777777766676666665 7777777777666666666666666666666666


Q ss_pred             CCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCc
Q 002896          263 FSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNE  334 (869)
Q Consensus       263 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~  334 (869)
                      +++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|.++|.+|.. ..+++|+.+++++|.
T Consensus       233 l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             eeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            6544443 444555555555555555555555555555555555555555444443 444444444444444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.9e-40  Score=376.35  Aligned_cols=386  Identities=22%  Similarity=0.228  Sum_probs=284.5

Q ss_pred             CeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCC-CCCCCCCCcccEEEccC
Q 002896          326 SGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSI-PHSLGNLTNLAILYLHS  404 (869)
Q Consensus       326 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~  404 (869)
                      +.++.+++.++. +|. +  .++|++|++++|.+++..|..+..+++|++|++++|.+.+.+ +..|..+++|++|++++
T Consensus        13 ~~~~c~~~~l~~-lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLHQ-VPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCSS-CCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCccc-CCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            346666666653 333 2  267788888888887777777888888888888888776444 45677778888888888


Q ss_pred             CccccccChhhhCCCCCCccccCCCcCccccccc--ccCCCCCCeEEccCCCCcccCCcc-ccCCCCCcEEecCCCcCcC
Q 002896          405 NTLLGSIPREIGNLKSLFELQLGDNKLSNSISHS--LGNLTHMTLLALYDNALSGVIPEE-LGNLVKLTMLTLSDNQLQG  481 (869)
Q Consensus       405 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~  481 (869)
                      |.+.+..|..+.++++|++|++++|.+++..+..  +..+++|+.|++++|.+++..|.. +.++++|++|++++|.+.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            8877777777777788888888888777654443  677777777777777777766655 6677777777777777766


Q ss_pred             CCC-CcCCC--CCCCEEECcCCcCccccCccc--------cCCCCCCEEeCCCCcccccCCcCcCC---CCCCcEEEccC
Q 002896          482 SIP-NLRNL--TNLIRLRLNRNHLTCNISESF--------GIHPKLTFIDLSHNNFYGQISSDWGK---CPNLGTFDVSV  547 (869)
Q Consensus       482 ~~~-~l~~l--~~L~~L~l~~n~l~~~~~~~~--------~~~~~L~~L~ls~n~l~~~~~~~~~~---~~~L~~L~ls~  547 (869)
                      ..+ .+..+  .+|+.|++++|.+.+..+..+        ..+++|++|++++|.+++..+..+..   .++|+.|++++
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~  248 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN  248 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred             cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence            544 33332  456666666666655443322        23345556666666555544443322   24555555555


Q ss_pred             CCCCCCCCcCcCCCCCCCEEEccCCcccccCCccccc--CcccceeeccCccccccCcccccCCcccccccccccccccc
Q 002896          548 NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGK--LSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNS  625 (869)
Q Consensus       548 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  625 (869)
                      |...+...              ..+.+.+..+..+..  .++|+.|++++|.+.+..|..+..+++|++|++++|.+++.
T Consensus       249 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          249 SYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI  314 (455)
T ss_dssp             CTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             cccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence            54433211              111222222223333  36899999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcC
Q 002896          626 IPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEM  705 (869)
Q Consensus       626 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  705 (869)
                      .|..|.++++|++|+|++|++.+..|..++++++|++|+|++|++++..|..|..+++|++|++++|++++..+..|..+
T Consensus       315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  394 (455)
T 3v47_A          315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL  394 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence            89999999999999999999999889999999999999999999999999999999999999999999999888889999


Q ss_pred             CCCcEEEccCCcccccCCCCcccc
Q 002896          706 NGLLYIDISYNELHGPIPNSTAFS  729 (869)
Q Consensus       706 ~~L~~L~ls~N~l~g~~p~~~~~~  729 (869)
                      ++|++|++++|+++|.||....+.
T Consensus       395 ~~L~~L~l~~N~l~~~~~~~~~l~  418 (455)
T 3v47_A          395 TSLQKIWLHTNPWDCSCPRIDYLS  418 (455)
T ss_dssp             TTCCEEECCSSCBCCCTTTTHHHH
T ss_pred             CcccEEEccCCCcccCCCcchHHH
Confidence            999999999999999999655443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.6e-40  Score=373.28  Aligned_cols=360  Identities=23%  Similarity=0.228  Sum_probs=230.5

Q ss_pred             CCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCC-CcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceee
Q 002896          107 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRI-PPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELA  185 (869)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  185 (869)
                      ++|++|+|++|.+++..|..|+++++|++|++++|.+.+.+ |..|+++++|++|++++|.+++..|..|+++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            78999999999999888899999999999999999987666 56789999999999999999988888999999999999


Q ss_pred             ccCcccCCCCCCc--cccccccceeeccccCCCCCCCcc-ccCCCCCCEEEccCCcCCCCcccccCCC--CCCCEEEccC
Q 002896          186 LTSNFLKGSIPPS--LGNLTNLAILYLHNNSLSGSIPSE-IGNLKSLSSLALGNNKLCGSIPLFLGNL--TNLDTLYLRN  260 (869)
Q Consensus       186 L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~  260 (869)
                      +++|.+++..+..  +.++++|++|++++|.+++..|.. +.++++|++|++++|.+++..+..+..+  .+|+.|++++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            9999988755444  888888999999998888877766 7888888888888888888777777655  6788888888


Q ss_pred             CCCCCCCCCCC--------CCCccCCccccCcccCCcccCccccCC---CCCCeeecccccccCCCCCcccCCCCCCeEe
Q 002896          261 NSFSSSIPSEI--------GNLKSLSILELGENRLNGSIPLSLGNL---TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLE  329 (869)
Q Consensus       261 n~l~~~~~~~l--------~~l~~L~~L~L~~n~~~~~~p~~l~~l---~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~  329 (869)
                      |.+.+..+..+        ..+++|++|++++|++.+..|..+...   ++|+.|++++|...+...             
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------  256 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF-------------  256 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT-------------
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc-------------
Confidence            88776544332        245667777777777766666554432   566666666665443211             


Q ss_pred             ccCCccccccCCCCcC--ccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCcc
Q 002896          330 LADNELSSSIPHYLGN--LTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL  407 (869)
Q Consensus       330 Ls~n~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  407 (869)
                       ..+.+....+..+..  .++|+.|++++|.+.+..|..+..+++|++|++++|++++..|..|..+++|++|++++|.+
T Consensus       257 -~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  335 (455)
T 3v47_A          257 -GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL  335 (455)
T ss_dssp             -TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             -chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence             011111111111111  13455555555555544444455555555555555555544444444555555555555554


Q ss_pred             ccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCc
Q 002896          408 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ  480 (869)
Q Consensus       408 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  480 (869)
                      .+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++.
T Consensus       336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence            4444444444444444444444444444444444444444444444444433333344444444444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=6.6e-39  Score=360.32  Aligned_cols=425  Identities=24%  Similarity=0.312  Sum_probs=183.6

Q ss_pred             CCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceee
Q 002896          130 LSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILY  209 (869)
Q Consensus       130 l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  209 (869)
                      .++|++|++++|.+ |.+|.+++++++|++|++++|.++|.+|..++++++|+.+++..|..           .++++|+
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~   77 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE   77 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence            35555555555555 45555555555555555555555555555555555555554444431           2455666


Q ss_pred             ccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCc
Q 002896          210 LHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNG  289 (869)
Q Consensus       210 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~  289 (869)
                      +++|.+++ +|..   .++|++|++++|.+++ +|..   .++|++|++++|++++ +|..   .++|++|++++|++++
T Consensus        78 l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~  145 (454)
T 1jl5_A           78 LNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK  145 (454)
T ss_dssp             CTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS
T ss_pred             ecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC
Confidence            66665553 2221   2455666666665554 3432   2455556665555553 2211   1345555555555553


Q ss_pred             ccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCC
Q 002896          290 SIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN  369 (869)
Q Consensus       290 ~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  369 (869)
                       +| .++++++|++|++++|++++ +|..+   ++|++|++++|.+++ +| .++.+++|+.|++++|.+++        
T Consensus       146 -lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~--------  209 (454)
T 1jl5_A          146 -LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK--------  209 (454)
T ss_dssp             -CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS--------
T ss_pred             -Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc--------
Confidence             34 35555555555555555543 33221   345555555555444 22 34444455555555544443        


Q ss_pred             CCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEE
Q 002896          370 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLA  449 (869)
Q Consensus       370 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  449 (869)
                                       +|...   ++|++|++++|.+. .+| .++.+++|++|++++|++++. |.   ..++|+.|+
T Consensus       210 -----------------l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~  263 (454)
T 1jl5_A          210 -----------------LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALN  263 (454)
T ss_dssp             -----------------CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEE
T ss_pred             -----------------CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEE
Confidence                             22111   24445555555444 333 244445555555555544432 11   124555555


Q ss_pred             ccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCccccc
Q 002896          450 LYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQ  529 (869)
Q Consensus       450 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~  529 (869)
                      +++|.+++ +|..   .++|++|++++|.+.+.. .+  .++|++|++++|.+++...    ..++|++|++++|++++ 
T Consensus       264 l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~-~~--~~~L~~L~l~~N~l~~i~~----~~~~L~~L~Ls~N~l~~-  331 (454)
T 1jl5_A          264 VRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS-EL--PPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIE-  331 (454)
T ss_dssp             CCSSCCSC-CCCC---CTTCCEEECCSSCCSEES-CC--CTTCCEEECCSSCCSEECC----CCTTCCEEECCSSCCSC-
T ss_pred             CCCCcccc-cCcc---cCcCCEEECcCCccCccc-Cc--CCcCCEEECcCCcCCcccC----CcCcCCEEECCCCcccc-
Confidence            55555554 2221   255666666666665421 11  2567777777777664221    12477888888888776 


Q ss_pred             CCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccc--cCCcccccCcccceeeccCccccccCccccc
Q 002896          530 ISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIG--KIPSEIGKLSSLIKLILRRNQLFGQLPSELG  607 (869)
Q Consensus       530 ~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~  607 (869)
                      +|..   +++|++|++++|++++ +|.   .+++|++|++++|++++  .+|..+..        ++.|.+.+.+|.   
T Consensus       332 lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~---  393 (454)
T 1jl5_A          332 LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPE---  393 (454)
T ss_dssp             CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC----------
T ss_pred             cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhccccccccc---
Confidence            4433   5778888888888874 555   46788888888888887  66665543        234666666665   


Q ss_pred             CCccccccccccccccc--cccccccCCCCCCeeeCcCCcCCcccchhhhc
Q 002896          608 SLIQLEYLDLSSNRLSN--SIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEK  656 (869)
Q Consensus       608 ~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  656 (869)
                      .+++|++|++++|++++  .+|      .+++.|.+.+|.+.+.++.....
T Consensus       394 ~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~~~~  438 (454)
T 1jl5_A          394 LPQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYEFAHET  438 (454)
T ss_dssp             ---------------------------------------------------
T ss_pred             ccCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCccccCHHH
Confidence            35789999999999987  555      34677788888888777655543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=8.7e-39  Score=359.37  Aligned_cols=416  Identities=25%  Similarity=0.325  Sum_probs=252.3

Q ss_pred             cCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCC-------------CEEEcCCCCC
Q 002896          101 PQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYI-------------EALHLFKNQL  167 (869)
Q Consensus       101 ~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L-------------~~L~L~~n~l  167 (869)
                      |.-.+.++|++|++++|.+ |.+|++++++++|++|++++|.+.|.+|..++++.+|             ++|++++|.+
T Consensus         5 p~~~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l   83 (454)
T 1jl5_A            5 PRNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL   83 (454)
T ss_dssp             ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred             ccccccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence            3333568899999999999 7899999999999999999999999999999888765             9999999988


Q ss_pred             CCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCccccc
Q 002896          168 SGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFL  247 (869)
Q Consensus       168 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l  247 (869)
                      ++ +|..   .++|++|++++|.+++ +|..   .++|++|++++|.+++. |..   .++|++|++++|.+++ +| .+
T Consensus        84 ~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~  149 (454)
T 1jl5_A           84 SS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-EL  149 (454)
T ss_dssp             SC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CC
T ss_pred             cc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-cc
Confidence            85 3432   3688999999999887 5543   37889999999988752 221   1688999999998886 66 58


Q ss_pred             CCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCe
Q 002896          248 GNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSG  327 (869)
Q Consensus       248 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~  327 (869)
                      +++++|++|++++|++++ +|..+   ++|++|++++|++++ +| .++++++|++|++++|.+++ +|..   .++|+.
T Consensus       150 ~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~  219 (454)
T 1jl5_A          150 QNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLES  219 (454)
T ss_dssp             TTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCE
T ss_pred             CCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccE
Confidence            888999999999998885 55543   488899999998886 55 58888899999999988875 4433   258888


Q ss_pred             EeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCcc
Q 002896          328 LELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL  407 (869)
Q Consensus       328 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  407 (869)
                      |++++|.++ .+| .++.+++|++|++++|++++ +|.   .+++|++|++++|++++ +|..   .++|+.|++++|.+
T Consensus       220 L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l  289 (454)
T 1jl5_A          220 IVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIF  289 (454)
T ss_dssp             EECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC
T ss_pred             EECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCcc
Confidence            999988888 455 37888888999998888875 443   24788888888888886 4443   36788888888888


Q ss_pred             ccccChhhhCCCCCCccccCCCcCcccccccccCC-CCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCc
Q 002896          408 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNL-THMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNL  486 (869)
Q Consensus       408 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l  486 (869)
                      .+. |.   -.++|++|++++|++++.     ..+ ++|+.|++++|++++ +|..   +++|++|++++|++.+ +|. 
T Consensus       290 ~~l-~~---~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~-  354 (454)
T 1jl5_A          290 SGL-SE---LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE-  354 (454)
T ss_dssp             SEE-SC---CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC-
T ss_pred             Ccc-cC---cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc-
Confidence            752 21   125788888888888762     223 478888888888876 4443   5778888888888874 344 


Q ss_pred             CCCCCCCEEECcCCcCcc--ccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCC--CCCcCcCCCC
Q 002896          487 RNLTNLIRLRLNRNHLTC--NISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIG--SLPPEIGDSS  562 (869)
Q Consensus       487 ~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~--~~p~~l~~l~  562 (869)
                       .+++|++|++++|.+++  .+|..+.      .|  +.|.+.+.+|..   +++|++|++++|.+++  .+|.      
T Consensus       355 -~l~~L~~L~L~~N~l~~l~~ip~~l~------~L--~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~------  416 (454)
T 1jl5_A          355 -LPQNLKQLHVEYNPLREFPDIPESVE------DL--RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE------  416 (454)
T ss_dssp             -CCTTCCEEECCSSCCSSCCCCCTTCC------EE--ECCC---------------------------------------
T ss_pred             -hhhhccEEECCCCCCCcCCCChHHHH------hh--hhcccccccccc---cCcCCEEECCCCcCCccccchh------
Confidence             46788888888888877  4454433      22  335566665542   4789999999999987  6664      


Q ss_pred             CCCEEEccCCcccccCCccccc
Q 002896          563 QLHVIDLSANHIIGKIPSEIGK  584 (869)
Q Consensus       563 ~L~~L~Ls~n~l~~~~p~~l~~  584 (869)
                      +++.|.+.+|.+.+.++.+...
T Consensus       417 sl~~L~~~~~~~~~~~~~~~~~  438 (454)
T 1jl5_A          417 SVEDLRMNSERVVDPYEFAHET  438 (454)
T ss_dssp             ----------------------
T ss_pred             hHhheeCcCcccCCccccCHHH
Confidence            4667788899888776655443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2e-36  Score=340.38  Aligned_cols=361  Identities=20%  Similarity=0.205  Sum_probs=178.4

Q ss_pred             CCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCcccc
Q 002896          122 TIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGN  201 (869)
Q Consensus       122 ~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  201 (869)
                      ..+..++++++|++|++++|.+.+ +| .++.+++|++|++++|.+++. |  ++++++|++|++++|++++. +  +++
T Consensus        33 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~  104 (457)
T 3bz5_A           33 TDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTP  104 (457)
T ss_dssp             TSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred             ccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCC
Confidence            344455666666666666666664 34 466666666666666666643 2  55666666666666666553 1  555


Q ss_pred             ccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccc
Q 002896          202 LTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILE  281 (869)
Q Consensus       202 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  281 (869)
                      +++|++|++++|.+++. |  ++.+++|++|++++|++++. +  ++.+++|++|++++|...+.+  .+..+++|++|+
T Consensus       105 l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~  176 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD  176 (457)
T ss_dssp             CTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred             CCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence            55555666655555542 2  55555555555555555542 1  445555555555555333333  244444444444


Q ss_pred             cCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCC
Q 002896          282 LGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG  361 (869)
Q Consensus       282 L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  361 (869)
                      +++|++                        ++ +|  ++.+++|+.|++++|.+++.   .++.+++|+.|++++|++++
T Consensus       177 ls~n~l------------------------~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          177 CSFNKI------------------------TE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             CCSSCC------------------------CC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred             CCCCcc------------------------ce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence            444444                        43 22  34444455555555544443   24444555555555555554


Q ss_pred             CCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccC
Q 002896          362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN  441 (869)
Q Consensus       362 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~  441 (869)
                       +|  +..+++|+.|++++|++++..   +..+++|+.|+++.|              +|+.|++++|.+.+.+|  ++.
T Consensus       227 -ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~  284 (457)
T 3bz5_A          227 -ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEG  284 (457)
T ss_dssp             -CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTT
T ss_pred             -cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccc
Confidence             23  445555555555555555432   233445555554433              34455555555554444  344


Q ss_pred             CCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeC
Q 002896          442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDL  521 (869)
Q Consensus       442 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  521 (869)
                      +++|+.|++++|...+.+|.   ...+|+.|++++|            ++|++|++++|.+++.   .+..+++|+.|++
T Consensus       285 l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l  346 (457)
T 3bz5_A          285 CRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSC  346 (457)
T ss_dssp             CTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC------------TTCCEEECTTCCCSCC---CCTTCTTCSEEEC
T ss_pred             cccCCEEECCCCcccceecc---CCCcceEechhhc------------ccCCEEECCCCccccc---ccccCCcCcEEEC
Confidence            55555555555555444442   2233333333222            3444555555544442   1444445555555


Q ss_pred             CCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcc
Q 002896          522 SHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSE  581 (869)
Q Consensus       522 s~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  581 (869)
                      ++|++++        ++.|..|++++|.+.|.     ..+..|+.+++++|+++|.+|..
T Consensus       347 ~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          347 VNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             CSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             CCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            5554443        12333444444444432     12233444455555555555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.4e-37  Score=349.94  Aligned_cols=326  Identities=20%  Similarity=0.221  Sum_probs=250.8

Q ss_pred             CCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCC-CcCCCCCCCEEECc
Q 002896          420 SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLN  498 (869)
Q Consensus       420 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~l~  498 (869)
                      .++.|++++|++++..+..|.++++|+.|++++|.+++..|..|.++++|++|++++|.+.+..+ .+..+++|++|+++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            34444444444444444445555555555555555555555555555555555555555554433 35666777777777


Q ss_pred             CCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccC
Q 002896          499 RNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKI  578 (869)
Q Consensus       499 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  578 (869)
                      +|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~  192 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR  192 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred             CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence            77777777777777888888888888888777778888888888888888888766667888888888888888888877


Q ss_pred             CcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhccc
Q 002896          579 PSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLI  658 (869)
Q Consensus       579 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  658 (869)
                      +..+..+++|+.|++++|...+.+|.......+|++|++++|.+++..+..+..+++|+.|+|++|++++..+..+..++
T Consensus       193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  272 (477)
T 2id5_A          193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL  272 (477)
T ss_dssp             TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred             hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence            77888888889999988888777777766677899999999999876667889999999999999999988888899999


Q ss_pred             ccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCccccccchhhhcC
Q 002896          659 HLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQG  738 (869)
Q Consensus       659 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~g  738 (869)
                      +|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|++++|+++|.|+..|.+.......+.+
T Consensus       273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~  352 (477)
T 2id5_A          273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNR  352 (477)
T ss_dssp             TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTT
T ss_pred             cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCc
Confidence            99999999999999999999999999999999999999888889999999999999999999988655444333344667


Q ss_pred             CCCCCCC
Q 002896          739 NEGLCGD  745 (869)
Q Consensus       739 n~~lc~~  745 (869)
                      +...|..
T Consensus       353 ~~~~C~~  359 (477)
T 2id5_A          353 QQPTCAT  359 (477)
T ss_dssp             CCCBEEE
T ss_pred             cCceeCC
Confidence            7777754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.7e-36  Score=338.29  Aligned_cols=151  Identities=20%  Similarity=0.212  Sum_probs=71.7

Q ss_pred             CCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCC
Q 002896          171 IPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNL  250 (869)
Q Consensus       171 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  250 (869)
                      .+..++++++|++|++++|.+++. | .++.+++|++|++++|.+++. |  ++.+++|++|++++|.+++. +  ++.+
T Consensus        34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l  105 (457)
T 3bz5_A           34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPL  105 (457)
T ss_dssp             SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred             cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCC
Confidence            334455555555555555555543 2 455555555555555555542 2  44555555555555555442 2  4445


Q ss_pred             CCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEec
Q 002896          251 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLEL  330 (869)
Q Consensus       251 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L  330 (869)
                      ++|++|++++|++++. |  ++.+++|++|++++|++++. +  ++.+++|++|++++|...+.+  .++.+++|+.|++
T Consensus       106 ~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l  177 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC  177 (457)
T ss_dssp             TTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred             CcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence            5555555555555432 2  44445555555555544432 1  344444444444444333332  2334444444444


Q ss_pred             cCCcccc
Q 002896          331 ADNELSS  337 (869)
Q Consensus       331 s~n~l~~  337 (869)
                      ++|.+++
T Consensus       178 s~n~l~~  184 (457)
T 3bz5_A          178 SFNKITE  184 (457)
T ss_dssp             CSSCCCC
T ss_pred             CCCccce
Confidence            4444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.6e-35  Score=336.07  Aligned_cols=346  Identities=26%  Similarity=0.387  Sum_probs=236.9

Q ss_pred             CCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEE
Q 002896          321 NLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAIL  400 (869)
Q Consensus       321 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  400 (869)
                      .+++++.|+++++.+.. +| .+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+..+  +..+++|++|
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            35667777777777664 23 35666777777777777765433  6677777777777777765443  6666777777


Q ss_pred             EccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCc
Q 002896          401 YLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ  480 (869)
Q Consensus       401 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  480 (869)
                      ++++|.+.+..+  +..+++|++|++++|.+.+..  .+..+++|+.|+++ +.+.+..  .+.++++|++|++++|.  
T Consensus       118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~--  188 (466)
T 1o6v_A          118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK--  188 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC--
T ss_pred             ECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCc--
Confidence            777776664322  666666666666666665432  35556666666654 2332221  14444455555555444  


Q ss_pred             CCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCC
Q 002896          481 GSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGD  560 (869)
Q Consensus       481 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~  560 (869)
                                           ++..  ..+..+++|++|++++|.+.+..+  ++.+++|++|++++|.+.+.  ..+..
T Consensus       189 ---------------------l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~  241 (466)
T 1o6v_A          189 ---------------------VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLAS  241 (466)
T ss_dssp             ---------------------CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGG
T ss_pred             ---------------------CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhc
Confidence                                 4332  124555566666666666655443  45566666666666666543  34666


Q ss_pred             CCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeee
Q 002896          561 SSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLN  640 (869)
Q Consensus       561 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  640 (869)
                      +++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|++.+..+  +..+++|+.|+
T Consensus       242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  315 (466)
T 1o6v_A          242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT  315 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred             CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence            7777777777777765543  6777778888888887776554  6678888888888888887544  77888899999


Q ss_pred             CcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccc
Q 002896          641 LSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHG  720 (869)
Q Consensus       641 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  720 (869)
                      +++|++++..|  +..+++|+.|++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            99998888766  77888999999999988776  468889999999999999998877  7888999999999999987

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.6e-35  Score=336.13  Aligned_cols=345  Identities=33%  Similarity=0.470  Sum_probs=193.3

Q ss_pred             CCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceee
Q 002896          106 ISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELA  185 (869)
Q Consensus       106 l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  185 (869)
                      +++++.|+++++.+.. +| .+..+++|++|++++|.+.+. |. ++++++|++|++++|.+++..+  ++++++|++|+
T Consensus        45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  118 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT  118 (466)
T ss_dssp             HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence            3455555565555542 33 255555666666666655533 22 5556666666666665554332  55566666666


Q ss_pred             ccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCC
Q 002896          186 LTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS  265 (869)
Q Consensus       186 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  265 (869)
                      +++|.+++..+  +.++++|++|++++|.+.+. + .++.+++|++|+++ +.+.+..  .+.++++|++|++++|.+++
T Consensus       119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~  191 (466)
T 1o6v_A          119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSD  191 (466)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCC
Confidence            66665554322  55566666666666655532 2 35556666666664 3333222  25556666666666666553


Q ss_pred             CCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcC
Q 002896          266 SIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGN  345 (869)
Q Consensus       266 ~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~  345 (869)
                      .  ..+..+++|++|++++|.+.+..|  ++.+++|++|++++|.+++.  ..+..+++|+.|++++|.+.+..+  +..
T Consensus       192 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~  263 (466)
T 1o6v_A          192 I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG  263 (466)
T ss_dssp             C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             C--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence            2  235555666666666666554433  44566666666666665532  235556666666666666655443  555


Q ss_pred             ccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccc
Q 002896          346 LTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQ  425 (869)
Q Consensus       346 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  425 (869)
                      +++|+.|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|+.|++++|.+.+..|  +..+++|++|+
T Consensus       264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  337 (466)
T 1o6v_A          264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF  337 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred             CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence            5666666666666654332  5556666666666666654333  5556666666666666655433  45566666666


Q ss_pred             cCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcC
Q 002896          426 LGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQG  481 (869)
Q Consensus       426 Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  481 (869)
                      +++|++++.  ..+..+++|+.|++++|.+++..|  +..+++|+.|++++|++++
T Consensus       338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            666666554  345566666666666666665554  5556666666666666554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.5e-35  Score=334.06  Aligned_cols=311  Identities=24%  Similarity=0.210  Sum_probs=283.5

Q ss_pred             cCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccC
Q 002896           98 IIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGG  177 (869)
Q Consensus        98 ~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  177 (869)
                      .+|..+.  +++++|+|++|.+++..|..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..+..|++
T Consensus        25 ~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  102 (477)
T 2id5_A           25 AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG  102 (477)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred             cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccC
Confidence            3455443  58999999999999888899999999999999999999888999999999999999999999766667899


Q ss_pred             CCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEE
Q 002896          178 LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLY  257 (869)
Q Consensus       178 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  257 (869)
                      +++|++|++++|++.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus       103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  182 (477)
T 2id5_A          103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR  182 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEe
Confidence            99999999999999999999999999999999999999988888999999999999999999987777899999999999


Q ss_pred             ccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCcccc
Q 002896          258 LRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS  337 (869)
Q Consensus       258 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~  337 (869)
                      +++|.+.+..+..+..+++|+.|++++|...+.+|.......+|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus       183 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  262 (477)
T 2id5_A          183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST  262 (477)
T ss_dssp             EESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc
Confidence            99999998888889999999999999999888888877777899999999999986554678899999999999999998


Q ss_pred             ccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccc
Q 002896          338 SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGS  410 (869)
Q Consensus       338 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  410 (869)
                      ..+..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..+..|..+++|+.|++++|++...
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            8888899999999999999999998888999999999999999999987777888999999999999988754

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.4e-34  Score=318.81  Aligned_cols=312  Identities=21%  Similarity=0.189  Sum_probs=201.6

Q ss_pred             CCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCce
Q 002896          104 GNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNE  183 (869)
Q Consensus       104 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  183 (869)
                      ..++++++|++++|.++...+..+..+++|++|++++|.+.+..|..|+++++|++|++++|.+++..|..++++++|++
T Consensus        42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            34678889999888887544445678888888999888888777778888888888888888888777777888888888


Q ss_pred             eeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCC
Q 002896          184 LALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF  263 (869)
Q Consensus       184 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  263 (869)
                      |++++|.++...+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+++.   .+..+++|+.|++++|.+
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            88888888865555567788888888888888777777777788888888888877654   244566777777777766


Q ss_pred             CCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCC
Q 002896          264 SSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYL  343 (869)
Q Consensus       264 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l  343 (869)
                      ++.     ...++|+.|++++|.+... |..  ..++|++|++++|.+++.  .++..+++|+.|++++|.+++..|..+
T Consensus       199 ~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~  268 (390)
T 3o6n_A          199 STL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF  268 (390)
T ss_dssp             SEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             ccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence            532     2234566666666666533 221  234555555555555532  344555555555555555554444444


Q ss_pred             cCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCc
Q 002896          344 GNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFE  423 (869)
Q Consensus       344 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  423 (869)
                      ..                        +++|++|++++|++++ +|..+..+++|++|++++|.+. .+|..+..+++|++
T Consensus       269 ~~------------------------l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~  322 (390)
T 3o6n_A          269 VK------------------------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN  322 (390)
T ss_dssp             TT------------------------CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSE
T ss_pred             cc------------------------cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCE
Confidence            44                        4445555555554443 2333344555555555555554 33444555566666


Q ss_pred             cccCCCcCcccccccccCCCCCCeEEccCCCCcc
Q 002896          424 LQLGDNKLSNSISHSLGNLTHMTLLALYDNALSG  457 (869)
Q Consensus       424 L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  457 (869)
                      |++++|.++...   +..+++|+.|++++|.+..
T Consensus       323 L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          323 LYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             EECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred             EECCCCccceeC---chhhccCCEEEcCCCCccc
Confidence            666666655431   4555666666666666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=8.7e-34  Score=331.69  Aligned_cols=332  Identities=22%  Similarity=0.218  Sum_probs=247.3

Q ss_pred             CcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEec
Q 002896          395 TNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTL  474 (869)
Q Consensus       395 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  474 (869)
                      ++++.+++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..|..|.++++|++|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            45555666666555444444566666666666666666665556666666666666666666666666666666666666


Q ss_pred             CCCcCcCCCCC-cCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCC
Q 002896          475 SDNQLQGSIPN-LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGS  553 (869)
Q Consensus       475 s~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~  553 (869)
                      ++|.+.+..+. +..+++|++|++++|.+++..+..|..+++|++|++++|.+++..   +..+++|+.|++++|.+.+ 
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-  206 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-  206 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-
Confidence            66666655443 466777777777777777777777777777777777777776542   4556777888888777654 


Q ss_pred             CCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCC
Q 002896          554 LPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNL  633 (869)
Q Consensus       554 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  633 (869)
                          +...++|+.|++++|.+....+..   .++|+.|++++|.+.+  +..+..+++|++|+|++|.+++..|..|..+
T Consensus       207 ----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  277 (597)
T 3oja_B          207 ----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM  277 (597)
T ss_dssp             ----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             ----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence                234457888888888876443322   3678888888888876  3667888999999999999999889999999


Q ss_pred             CCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEc
Q 002896          634 VKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDI  713 (869)
Q Consensus       634 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  713 (869)
                      ++|+.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++..   +..+++|+.|++
T Consensus       278 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l  352 (597)
T 3oja_B          278 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL  352 (597)
T ss_dssp             SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred             cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEe
Confidence            999999999999877 5667788899999999999996 57777889999999999999998864   566789999999


Q ss_pred             cCCcccccCCCCccccccchhhhcCCCCCCCC
Q 002896          714 SYNELHGPIPNSTAFSDALMEALQGNEGLCGD  745 (869)
Q Consensus       714 s~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~  745 (869)
                      ++|+++|.++. ..+..+....+.+++..|+.
T Consensus       353 ~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~  383 (597)
T 3oja_B          353 SHNDWDCNSLR-ALFRNVARPAVDDADQHCKI  383 (597)
T ss_dssp             CSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCT
T ss_pred             eCCCCCChhHH-HHHHHHhhhccccccccCCc
Confidence            99999998753 34566666778899999976

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.3e-33  Score=312.93  Aligned_cols=333  Identities=22%  Similarity=0.231  Sum_probs=245.2

Q ss_pred             CCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEe
Q 002896          394 LTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLT  473 (869)
Q Consensus       394 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  473 (869)
                      +++++.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+.++++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            34556666666665543334456666666666666666665555666666666666666666666666666677777777


Q ss_pred             cCCCcCcCCCCC-cCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCC
Q 002896          474 LSDNQLQGSIPN-LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIG  552 (869)
Q Consensus       474 Ls~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~  552 (869)
                      +++|.+....+. +..+++|++|++++|.+++..+..+..+++|++|++++|.+++.   .+..+++|+.|++++|.+.+
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence            777766654443 46677777777777777777777777777778888877777654   24556778888888877653


Q ss_pred             CCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccC
Q 002896          553 SLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGN  632 (869)
Q Consensus       553 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  632 (869)
                           +...++|++|++++|.+... |.  ...++|+.|++++|.+.+.  ..+..+++|++|++++|.+++..|..|..
T Consensus       201 -----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (390)
T 3o6n_A          201 -----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK  270 (390)
T ss_dssp             -----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             -----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence                 23345788888888888754 22  2347888999999988764  56778899999999999999888999999


Q ss_pred             CCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEE
Q 002896          633 LVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYID  712 (869)
Q Consensus       633 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  712 (869)
                      +++|+.|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..   +..+++|++|+
T Consensus       271 l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~  345 (390)
T 3o6n_A          271 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLT  345 (390)
T ss_dssp             CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEE
T ss_pred             cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEE
Confidence            9999999999999876 5666778899999999999996 56667888999999999999998863   66778999999


Q ss_pred             ccCCcccccCCCCccccccchhhhcCCCCCCCC
Q 002896          713 ISYNELHGPIPNSTAFSDALMEALQGNEGLCGD  745 (869)
Q Consensus       713 ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~  745 (869)
                      +++|+++|.+.. ..+..+....+.+++..|..
T Consensus       346 l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          346 LSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             CCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred             cCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence            999999997643 23445555566777777754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=8.5e-34  Score=331.77  Aligned_cols=312  Identities=21%  Similarity=0.191  Sum_probs=210.3

Q ss_pred             CCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCcee
Q 002896          105 NISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNEL  184 (869)
Q Consensus       105 ~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  184 (869)
                      .+++++.|++++|.+....+..+..+++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..|..|+++++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            46788888888888875555567788888888888888887777788888888888888888887777777888888888


Q ss_pred             eccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCC
Q 002896          185 ALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFS  264 (869)
Q Consensus       185 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  264 (869)
                      ++++|.+++..+..|+++++|++|++++|.+++..|..++.+++|++|++++|.+++..   ++.+++|+.|++++|.++
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence            88888887666666677777888888777777777777777777777777777776542   344566667777666655


Q ss_pred             CCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCc
Q 002896          265 SSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLG  344 (869)
Q Consensus       265 ~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~  344 (869)
                      +.     ...++|+.|++++|.+....+ .+  .+                        +|+.|++++|.+++.  ..+.
T Consensus       206 ~l-----~~~~~L~~L~ls~n~l~~~~~-~~--~~------------------------~L~~L~L~~n~l~~~--~~l~  251 (597)
T 3oja_B          206 TL-----AIPIAVEELDASHNSINVVRG-PV--NV------------------------ELTILKLQHNNLTDT--AWLL  251 (597)
T ss_dssp             EE-----ECCTTCSEEECCSSCCCEEEC-SC--CS------------------------CCCEEECCSSCCCCC--GGGG
T ss_pred             cc-----cCCchhheeeccCCccccccc-cc--CC------------------------CCCEEECCCCCCCCC--hhhc
Confidence            31     223345555555555542221 11  13                        445555555554432  3445


Q ss_pred             CccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCcc
Q 002896          345 NLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFEL  424 (869)
Q Consensus       345 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  424 (869)
                      .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|++|
T Consensus       252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L  329 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL  329 (597)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred             cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE
Confidence            55555555555555555555556666666666666666654 3445555667777777777766 456666777777777


Q ss_pred             ccCCCcCcccccccccCCCCCCeEEccCCCCccc
Q 002896          425 QLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV  458 (869)
Q Consensus       425 ~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  458 (869)
                      ++++|.+.+..   +..+++|+.|++++|.+.+.
T Consensus       330 ~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          330 YLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             ECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred             ECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence            77777776542   56677888888888887754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.9e-32  Score=297.26  Aligned_cols=307  Identities=27%  Similarity=0.409  Sum_probs=216.0

Q ss_pred             cCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCC
Q 002896          367 IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMT  446 (869)
Q Consensus       367 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  446 (869)
                      +..+++|++|++++|.+... + .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++.  ..+..+++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred             chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence            44678888888888888743 3 47778888888888888775433  77778888888888877663  3467777777


Q ss_pred             eEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcc
Q 002896          447 LLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF  526 (869)
Q Consensus       447 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l  526 (869)
                      +|++++|.+.+..+  +..+++|++|++++|......+.+..+++|++|++++|.+....+                   
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------------------  172 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-------------------  172 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-------------------
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-------------------
Confidence            77777777765433  666667777777766555544455555555555555555443322                   


Q ss_pred             cccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccc
Q 002896          527 YGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL  606 (869)
Q Consensus       527 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~  606 (869)
                             +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+..+  +
T Consensus       173 -------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~  239 (347)
T 4fmz_A          173 -------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L  239 (347)
T ss_dssp             -------GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred             -------hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--h
Confidence                   3444555555555555543222  5556666666666666654433  5666777777777777665544  6


Q ss_pred             cCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcE
Q 002896          607 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEM  686 (869)
Q Consensus       607 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  686 (869)
                      ..+++|++|++++|.+++.  ..+..+++|+.|++++|++++.  ..+..+++|++|++++|.+++..|..++.+++|++
T Consensus       240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  315 (347)
T 4fmz_A          240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT  315 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred             hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence            6778888888888887754  4678888899999999988775  45788899999999999998888898999999999


Q ss_pred             EeCCCCCCCCCcchhhhcCCCCcEEEccCCccc
Q 002896          687 LNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH  719 (869)
Q Consensus       687 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  719 (869)
                      |++++|++++..|  +..+++|++|++++|+++
T Consensus       316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EEccCCccccccC--hhhhhccceeehhhhccc
Confidence            9999999998777  788899999999999875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=2.1e-34  Score=310.11  Aligned_cols=283  Identities=22%  Similarity=0.297  Sum_probs=181.9

Q ss_pred             cCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcE
Q 002896           32 SDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKY  111 (869)
Q Consensus        32 ~~~~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~  111 (869)
                      .+..+|++||++||+++..++ .+.+.+|........++|.|.|+.|+...              ..++  -...+++++
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~-~~~~~~w~~~~~~~~~~~~~~g~~~~~~~--------------~~l~--~~~~~~l~~   85 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADR-NRWHSAWRQANSNNPQIETRTGRALKATA--------------DLLE--DATQPGRVA   85 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCC-TTHHHHHHHHTTTCTTSCCSHHHHHHHHH--------------HHHH--HHTSTTCCE
T ss_pred             ccCchHHHHHHHHHHhccCCc-hhhhhhhcccccccccccccCCcchhhhH--------------HHHh--cccccceeE
Confidence            355789999999999886545 45567883111246789999999995210              0000  001234444


Q ss_pred             EeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCccc
Q 002896          112 LDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFL  191 (869)
Q Consensus       112 L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l  191 (869)
                      |+|++|.++ .+|..++++++|++|+|++|.+. .+|..++++++|++|++++|.++ .+|..++++++|++|++++|++
T Consensus        86 L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~  162 (328)
T 4fcg_A           86 LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE  162 (328)
T ss_dssp             EEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETT
T ss_pred             EEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCC
Confidence            455444444 44444444555555555555544 44545555555555555555554 4454555555555555555555


Q ss_pred             CCCCCCccc---------cccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCC
Q 002896          192 KGSIPPSLG---------NLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS  262 (869)
Q Consensus       192 ~~~~~~~l~---------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  262 (869)
                      .+.+|..+.         ++++|++|++++|.++ .+|..++.+++|++|++++|.+++ +|..++.+++|++|++++|.
T Consensus       163 ~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~  240 (328)
T 4fcg_A          163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCT  240 (328)
T ss_dssp             CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCT
T ss_pred             ccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCc
Confidence            444544443         3777777777777777 666677777777777777777774 45567777777777777777


Q ss_pred             CCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccc
Q 002896          263 FSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELS  336 (869)
Q Consensus       263 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~  336 (869)
                      +.+.+|..+..+++|++|++++|++.+.+|..+.++++|++|++++|.+.+.+|.+++++++|+.+++..+.+.
T Consensus       241 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            77777777777777777777777777777777777778888888887777777877778888887777765544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=9.1e-34  Score=303.31  Aligned_cols=259  Identities=25%  Similarity=0.428  Sum_probs=233.1

Q ss_pred             CCCCEEECcCCcCcc--ccCccccCCCCCCEEeCCC-CcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCE
Q 002896          490 TNLIRLRLNRNHLTC--NISESFGIHPKLTFIDLSH-NNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHV  566 (869)
Q Consensus       490 ~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~ls~-n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~  566 (869)
                      .+++.|++++|.+++  .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|++++.+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            457777777777777  7778888888888888884 8888888888888999999999999998888888999999999


Q ss_pred             EEccCCcccccCCcccccCcccceeeccCccccccCcccccCCc-cccccccccccccccccccccCCCCCCeeeCcCCc
Q 002896          567 IDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLI-QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQ  645 (869)
Q Consensus       567 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  645 (869)
                      |++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|++++.+|..+..++ |+.|++++|+
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            99999999988999999999999999999999989999998988 999999999999999999999987 9999999999


Q ss_pred             CCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCC
Q 002896          646 FIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS  725 (869)
Q Consensus       646 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~  725 (869)
                      +++.+|..+..+++|++|+|++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            9999999999999999999999999888777 888999999999999999999999999999999999999999999998


Q ss_pred             ccccccchhhhcCCCCCCCCCCCCCCC
Q 002896          726 TAFSDALMEALQGNEGLCGDIKGFQSC  752 (869)
Q Consensus       726 ~~~~~~~~~~~~gn~~lc~~~~~~~~C  752 (869)
                      ..+.....-.+.+|+.+||. |. ..|
T Consensus       288 ~~l~~L~~l~l~~N~~lc~~-p~-~~C  312 (313)
T 1ogq_A          288 GNLQRFDVSAYANNKCLCGS-PL-PAC  312 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEEST-TS-SCC
T ss_pred             ccccccChHHhcCCCCccCC-CC-CCC
Confidence            77887777789999999997 32 357

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.8e-32  Score=296.25  Aligned_cols=307  Identities=25%  Similarity=0.363  Sum_probs=234.8

Q ss_pred             CcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCC
Q 002896          343 LGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLF  422 (869)
Q Consensus       343 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  422 (869)
                      +..+++|+.|+++++.+... + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+.  ..+..+++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred             chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence            45678999999999999754 3 48889999999999999986544  89999999999999999853  4699999999


Q ss_pred             ccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcC
Q 002896          423 ELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHL  502 (869)
Q Consensus       423 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l  502 (869)
                      +|++++|.+.+..+  +..+++|+.|++++|......+. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l  189 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI  189 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc
Confidence            99999999987654  88999999999999976655544 8999999999999999886554 78889999999999988


Q ss_pred             ccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCccc
Q 002896          503 TCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI  582 (869)
Q Consensus       503 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l  582 (869)
                      .+..+  +..+++|+.+++++|.+.+..+  +..+++|++|++++|++++..+  +..+++|++|++++|.++       
T Consensus       190 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-------  256 (347)
T 4fmz_A          190 EDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS-------  256 (347)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-------
T ss_pred             ccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccC-------
Confidence            76544  6667777777777777665433  5555666666666665554322  444555555555555444       


Q ss_pred             ccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhccccccc
Q 002896          583 GKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSE  662 (869)
Q Consensus       583 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  662 (869)
                                       +.  ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|++.+..|..+..+++|++
T Consensus       257 -----------------~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  315 (347)
T 4fmz_A          257 -----------------DI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT  315 (347)
T ss_dssp             -----------------CC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred             -----------------CC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence                             32  2344666677777777776654  35777888888888888888888888888888888


Q ss_pred             ccccccccCCchhhhhcCCCCCcEEeCCCCCCC
Q 002896          663 LDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS  695 (869)
Q Consensus       663 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  695 (869)
                      |++++|++++..|  +..+++|++|++++|+++
T Consensus       316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EEccCCccccccC--hhhhhccceeehhhhccc
Confidence            8888888877776  778888888888888875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.2e-30  Score=282.34  Aligned_cols=288  Identities=22%  Similarity=0.299  Sum_probs=138.6

Q ss_pred             CCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeecc
Q 002896          108 KLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALT  187 (869)
Q Consensus       108 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  187 (869)
                      ++++++++++.++ .+|..+.  ++|++|++++|.+.+..|..|+++++|++|++++|.+++..|..|+++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            3555555555554 3444432  455555555555554445555555555555555555555445555555555555555


Q ss_pred             CcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCC--CcccccCCCCCCCEEEccCCCCCC
Q 002896          188 SNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCG--SIPLFLGNLTNLDTLYLRNNSFSS  265 (869)
Q Consensus       188 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~  265 (869)
                      +|+++ .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.++.  ..+..+..+ +|++|++++|.+++
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            55554 2222222  344444444444443333334444444444444444431  233333333 44444444444332


Q ss_pred             CCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcC
Q 002896          266 SIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGN  345 (869)
Q Consensus       266 ~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~  345 (869)
                       +|..+.                          ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..
T Consensus       187 -l~~~~~--------------------------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  239 (332)
T 2ft3_A          187 -IPKDLP--------------------------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF  239 (332)
T ss_dssp             -CCSSSC--------------------------SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred             -cCcccc--------------------------CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence             222221                          33444444444444333334444444444444444444444444444


Q ss_pred             ccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCC------CCcccEEEccCCccc--cccChhhhC
Q 002896          346 LTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGN------LTNLAILYLHSNTLL--GSIPREIGN  417 (869)
Q Consensus       346 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~--~~~~~~~~~  417 (869)
                      +++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|..      .+.|+.|++++|++.  +..|..+..
T Consensus       240 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~  318 (332)
T 2ft3_A          240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC  318 (332)
T ss_dssp             CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred             CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence            444444444444444 34444445555555555555555444444432      245667777777665  445566777


Q ss_pred             CCCCCccccCCCc
Q 002896          418 LKSLFELQLGDNK  430 (869)
Q Consensus       418 l~~L~~L~Ls~n~  430 (869)
                      +++|+.+++++|+
T Consensus       319 l~~L~~l~l~~n~  331 (332)
T 2ft3_A          319 VTDRLAIQFGNYK  331 (332)
T ss_dssp             BCCSTTEEC----
T ss_pred             cchhhhhhccccc
Confidence            7777777777664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.2e-30  Score=280.14  Aligned_cols=289  Identities=23%  Similarity=0.322  Sum_probs=205.8

Q ss_pred             CcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeec
Q 002896          131 SMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL  210 (869)
Q Consensus       131 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  210 (869)
                      .+|++++++++.+. .+|..+.  ++|++|++++|.+++..|..|+++++|++|++++|.+++..|..++++++|++|++
T Consensus        33 c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           33 CHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             EETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             ccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            36777777777766 5565543  46666777766666555556666666666666666665555555555555555555


Q ss_pred             cccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCC--
Q 002896          211 HNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN--  288 (869)
Q Consensus       211 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~--  288 (869)
                      ++|.++ .+|..+.  ++|+                        +|++++|.+++..+..+.++++|++|++++|.+.  
T Consensus       110 ~~n~l~-~l~~~~~--~~L~------------------------~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  162 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLV------------------------ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS  162 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCC------------------------EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG
T ss_pred             CCCcCC-ccCcccc--ccCC------------------------EEECCCCccCccCHhHhCCCccCCEEECCCCccccC
Confidence            555554 2333222  4444                        4455444444333333445555555555555553  


Q ss_pred             cccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccC
Q 002896          289 GSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIG  368 (869)
Q Consensus       289 ~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  368 (869)
                      +..+..+..+ +|++|++++|.+++ +|..+.  ++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+.
T Consensus       163 ~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  238 (332)
T 2ft3_A          163 GFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS  238 (332)
T ss_dssp             GSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred             CCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence            2445555555 67777777777764 454443  7899999999999998889999999999999999999998888899


Q ss_pred             CCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhC------CCCCCccccCCCcCc--cccccccc
Q 002896          369 NLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGN------LKSLFELQLGDNKLS--NSISHSLG  440 (869)
Q Consensus       369 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~Ls~n~l~--~~~~~~l~  440 (869)
                      .+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..+..      ...|+.|++++|.+.  +..+..+.
T Consensus       239 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~  317 (332)
T 2ft3_A          239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR  317 (332)
T ss_dssp             GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred             CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence            9999999999999998 78888999999999999999999776666654      367999999999987  67788899


Q ss_pred             CCCCCCeEEccCCC
Q 002896          441 NLTHMTLLALYDNA  454 (869)
Q Consensus       441 ~l~~L~~L~l~~n~  454 (869)
                      .+++|+.+++++|+
T Consensus       318 ~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          318 CVTDRLAIQFGNYK  331 (332)
T ss_dssp             TBCCSTTEEC----
T ss_pred             ccchhhhhhccccc
Confidence            99999999999875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5e-30  Score=277.20  Aligned_cols=225  Identities=27%  Similarity=0.343  Sum_probs=111.2

Q ss_pred             CCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeec
Q 002896          107 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELAL  186 (869)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  186 (869)
                      +.+++|+|++|.+++..+..|+++++|++|+|++|.+.+..|..|+++++|++|++++|.++ .+|..+.  ++|++|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence            46777777777777655666777777777777777777666667777777777777777665 3443332  45555555


Q ss_pred             cCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCC
Q 002896          187 TSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSS  266 (869)
Q Consensus       187 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  266 (869)
                      ++|.+++..+..+.++++|++|++++|.+..                      .+..+..+..+++|++|++++|.++. 
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~~~~~~~l~~L~~L~l~~n~l~~-  185 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SGIENGAFQGMKKLSYIRIADTNITT-  185 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCc----------------------cCcChhhccCCCCcCEEECCCCcccc-
Confidence            5555544444444444444444444444431                      01233334444444444444444432 


Q ss_pred             CCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCc
Q 002896          267 IPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNL  346 (869)
Q Consensus       267 ~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l  346 (869)
                      +|..+.  ++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+
T Consensus       186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l  262 (330)
T 1xku_A          186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH  262 (330)
T ss_dssp             CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence            222221  34444444444444333444444444444444444444333333444444444444444433 223333333


Q ss_pred             cccceeeccCCcCC
Q 002896          347 TNLAAFYLYKNSLS  360 (869)
Q Consensus       347 ~~L~~L~L~~n~l~  360 (869)
                      ++|++|++++|.++
T Consensus       263 ~~L~~L~l~~N~i~  276 (330)
T 1xku_A          263 KYIQVVYLHNNNIS  276 (330)
T ss_dssp             SSCCEEECCSSCCC
T ss_pred             CCcCEEECCCCcCC
Confidence            33333333333333

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=6.1e-30  Score=276.51  Aligned_cols=267  Identities=22%  Similarity=0.285  Sum_probs=185.6

Q ss_pred             CCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEcc
Q 002896          156 YIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALG  235 (869)
Q Consensus       156 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  235 (869)
                      +|++|++++|.+++..+..|+++++|++|++++|.+++..|..++++++|++|++++|.++ .+|..+.  ++|++|+++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECC
Confidence            4445555555554444444555555555555555555555555555566666666666655 3444333  688889999


Q ss_pred             CCcCCCCcccccCCCCCCCEEEccCCCCCC--CCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccC
Q 002896          236 NNKLCGSIPLFLGNLTNLDTLYLRNNSFSS--SIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG  313 (869)
Q Consensus       236 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~  313 (869)
                      +|.+++..+..+.++++|++|++++|.+..  ..+..+.++++|++|++++|.++. +|..+.  ++|++|++++|.+++
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~  206 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITK  206 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCE
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCc
Confidence            888887777778889999999999998863  667778888999999999998874 555443  788888888888887


Q ss_pred             CCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCC
Q 002896          314 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGN  393 (869)
Q Consensus       314 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~  393 (869)
                      ..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|+.
T Consensus       207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~  285 (330)
T 1xku_A          207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP  285 (330)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence            77778888888888888888888877777888888888888888887 66777778888888888888887766666543


Q ss_pred             C------CcccEEEccCCcccc--ccChhhhCCCCCCccccCCC
Q 002896          394 L------TNLAILYLHSNTLLG--SIPREIGNLKSLFELQLGDN  429 (869)
Q Consensus       394 l------~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n  429 (869)
                      .      +.++.+++++|++..  ..|..|..+.+++.+++++|
T Consensus       286 ~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             cccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            2      556666666666542  33345555555555555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.2e-33  Score=318.99  Aligned_cols=376  Identities=20%  Similarity=0.129  Sum_probs=202.7

Q ss_pred             CCCCeEeccCCccccccCC-CCcCccccceeeccCCcCCC----CCccccCCCCCCCEEEccCCcCCCCCCCCCC-CCC-
Q 002896          323 KSLSGLELADNELSSSIPH-YLGNLTNLAAFYLYKNSLSG----SIPSEIGNLKSLSNLDLSENKLSGSIPHSLG-NLT-  395 (869)
Q Consensus       323 ~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~-  395 (869)
                      ++|++|++++|.++..... .+..+++|++|++++|.+++    .++..+..+++|++|++++|.+++..+..+. .++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            3456666666665543222 24455566666666666553    2334445556666666666655432221111 122 


Q ss_pred             ---cccEEEccCCcccc----ccChhhhCCCCCCccccCCCcCccccccccc-----CCCCCCeEEccCCCCcccC----
Q 002896          396 ---NLAILYLHSNTLLG----SIPREIGNLKSLFELQLGDNKLSNSISHSLG-----NLTHMTLLALYDNALSGVI----  459 (869)
Q Consensus       396 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~----  459 (869)
                         +|++|++++|.+..    .++..+..+++|++|++++|.+.+..+..+.     ..++|+.|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               45555555555542    2344455555555555555555433222211     1334555555555444322    


Q ss_pred             CccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCcccc-----CCCCCCEEeCCCCccccc----C
Q 002896          460 PEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFG-----IHPKLTFIDLSHNNFYGQ----I  530 (869)
Q Consensus       460 ~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~ls~n~l~~~----~  530 (869)
                      +..+..                       +++|++|++++|.++......+.     ..++|++|++++|.+++.    +
T Consensus       163 ~~~l~~-----------------------~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  219 (461)
T 1z7x_W          163 ASVLRA-----------------------KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL  219 (461)
T ss_dssp             HHHHHH-----------------------CTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred             HHHHhh-----------------------CCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence            222333                       34444444444444332222221     133555555555555442    2


Q ss_pred             CcCcCCCCCCcEEEccCCCCCCCC-----CcCcCCCCCCCEEEccCCccccc----CCcccccCcccceeeccCcccccc
Q 002896          531 SSDWGKCPNLGTFDVSVNNIIGSL-----PPEIGDSSQLHVIDLSANHIIGK----IPSEIGKLSSLIKLILRRNQLFGQ  601 (869)
Q Consensus       531 ~~~~~~~~~L~~L~ls~n~l~~~~-----p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~  601 (869)
                      +..+..+++|++|++++|.+.+..     +..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+.
T Consensus       220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  299 (461)
T 1z7x_W          220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE  299 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred             HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence            333444555566666555554321     11223456666677776666543    445555667777777777766544


Q ss_pred             Cccccc-----CCcccccccccccccccc----ccccccCCCCCCeeeCcCCcCCcccchhhhc-----ccccccccccc
Q 002896          602 LPSELG-----SLIQLEYLDLSSNRLSNS----IPRSLGNLVKLHYLNLSTNQFIQEIPIKLEK-----LIHLSELDLSH  667 (869)
Q Consensus       602 ~~~~~~-----~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~  667 (869)
                      .+..+.     ..++|++|++++|.+++.    ++..+..+++|+.|+|++|++.+..+..+..     .++|++|+|++
T Consensus       300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  379 (461)
T 1z7x_W          300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD  379 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence            333222     225777777777777654    4555666777888888888776655555543     56788888888


Q ss_pred             cccCC----chhhhhcCCCCCcEEeCCCCCCCCCcchhhh-----cCCCCcEEEccCCccccc
Q 002896          668 NFLGK----EIPSQICNMRSLEMLNLSHNNLSDFIPRCFE-----EMNGLLYIDISYNELHGP  721 (869)
Q Consensus       668 N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~ls~N~l~g~  721 (869)
                      |.+++    .+|..+..+++|++|++++|++++.....+.     ....|+.|++.++.+...
T Consensus       380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~  442 (461)
T 1z7x_W          380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  442 (461)
T ss_dssp             SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             CCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence            88765    6777777778888888888877765332222     134577777777766543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=7.3e-33  Score=314.64  Aligned_cols=355  Identities=21%  Similarity=0.220  Sum_probs=245.9

Q ss_pred             cccceeeccCCcCCCCCccc-cCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccc
Q 002896          347 TNLAAFYLYKNSLSGSIPSE-IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQ  425 (869)
Q Consensus       347 ~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  425 (869)
                      ++|++|++++|+++...... +..+++|++|++++|.+++...                    ..++..+..+++|++|+
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~--------------------~~l~~~l~~~~~L~~L~   62 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC--------------------KDISSALRVNPALAELN   62 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHH--------------------HHHHHHHHTCTTCCEEE
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHH--------------------HHHHHHHHhCCCcCEEe
Confidence            45666666666655432222 4445555555555555542110                    01233344444444444


Q ss_pred             cCCCcCcccccccc-cCCC----CCCeEEccCCCCcc----cCCccccCCCCCcEEecCCCcCcCCCC-----C-cCCCC
Q 002896          426 LGDNKLSNSISHSL-GNLT----HMTLLALYDNALSG----VIPEELGNLVKLTMLTLSDNQLQGSIP-----N-LRNLT  490 (869)
Q Consensus       426 Ls~n~l~~~~~~~l-~~l~----~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~-l~~l~  490 (869)
                      +++|.+.+..+..+ ..++    +|++|++++|.++.    .++..+..+++|++|++++|.+.+..+     . ....+
T Consensus        63 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  142 (461)
T 1z7x_W           63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC  142 (461)
T ss_dssp             CTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             CCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence            44444443222211 1122    45555555555552    334555556666666666665543211     1 22355


Q ss_pred             CCCEEECcCCcCcccc----CccccCCCCCCEEeCCCCcccccCCcCcC-----CCCCCcEEEccCCCCCCC----CCcC
Q 002896          491 NLIRLRLNRNHLTCNI----SESFGIHPKLTFIDLSHNNFYGQISSDWG-----KCPNLGTFDVSVNNIIGS----LPPE  557 (869)
Q Consensus       491 ~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-----~~~~L~~L~ls~n~l~~~----~p~~  557 (869)
                      +|++|++++|.+++..    +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..
T Consensus       143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  222 (461)
T 1z7x_W          143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI  222 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred             cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence            7888888888877643    45566789999999999998765444332     366999999999999874    5677


Q ss_pred             cCCCCCCCEEEccCCcccccC-----CcccccCcccceeeccCcccccc----CcccccCCccccccccccccccccccc
Q 002896          558 IGDSSQLHVIDLSANHIIGKI-----PSEIGKLSSLIKLILRRNQLFGQ----LPSELGSLIQLEYLDLSSNRLSNSIPR  628 (869)
Q Consensus       558 l~~l~~L~~L~Ls~n~l~~~~-----p~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~  628 (869)
                      +..+++|++|++++|.+.+..     +..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+.
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence            788999999999999987542     22233589999999999999875    577777899999999999999765554


Q ss_pred             cccC-----CCCCCeeeCcCCcCCcc----cchhhhcccccccccccccccCCchhhhhcC-----CCCCcEEeCCCCCC
Q 002896          629 SLGN-----LVKLHYLNLSTNQFIQE----IPIKLEKLIHLSELDLSHNFLGKEIPSQICN-----MRSLEMLNLSHNNL  694 (869)
Q Consensus       629 ~~~~-----l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l  694 (869)
                      .+..     .++|+.|++++|.+++.    ++..+..+++|++|+|++|.+++..+..+..     .++|++|++++|++
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i  382 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV  382 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence            4433     37999999999999876    5677788899999999999998877666653     78999999999999


Q ss_pred             CC----CcchhhhcCCCCcEEEccCCccccc
Q 002896          695 SD----FIPRCFEEMNGLLYIDISYNELHGP  721 (869)
Q Consensus       695 ~~----~~p~~l~~l~~L~~L~ls~N~l~g~  721 (869)
                      ++    .+|..+..+++|++|++++|++++.
T Consensus       383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          383 SDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             CHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             ChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            97    7889999999999999999998753

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=4.2e-29  Score=266.90  Aligned_cols=284  Identities=22%  Similarity=0.263  Sum_probs=227.2

Q ss_pred             CCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCC--CC
Q 002896           70 PCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSG--RI  147 (869)
Q Consensus        70 ~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~--~~  147 (869)
                      .|.|++|.|+..+            ++ .+|..+.  ++|++|+|++|.++...+..+.++++|++|+|++|.+..  ..
T Consensus         6 ~C~~~~l~c~~~~------------l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~   70 (306)
T 2z66_A            6 SCSGTEIRCNSKG------------LT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC   70 (306)
T ss_dssp             EEETTEEECCSSC------------CS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE
T ss_pred             eeCCCEEEcCCCC------------cc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc
Confidence            3899999996432            22 3344333  689999999999985555568999999999999999873  34


Q ss_pred             CcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCC-CccccccccceeeccccCCCCCCCccccCC
Q 002896          148 PPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIP-PSLGNLTNLAILYLHNNSLSGSIPSEIGNL  226 (869)
Q Consensus       148 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  226 (869)
                      |..+..+++|++|++++|.++ .+|..+.++++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+
T Consensus        71 ~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  149 (306)
T 2z66_A           71 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL  149 (306)
T ss_dssp             EHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC
T ss_pred             ccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccC
Confidence            677778999999999999988 577789999999999999999987765 678899999999999999988888888999


Q ss_pred             CCCCEEEccCCcCCC-CcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeee
Q 002896          227 KSLSSLALGNNKLCG-SIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLY  305 (869)
Q Consensus       227 ~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~  305 (869)
                      ++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus       150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  229 (306)
T 2z66_A          150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD  229 (306)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEE
T ss_pred             cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeE
Confidence            999999999999886 5788888999999999999999888888888999999999999999877777788889999999


Q ss_pred             cccccccCCCCCcccCCC-CCCeEeccCCccccccC--CCCcCccccceeeccCCcCCCCCccccCC
Q 002896          306 LYTNSLSGSIPSEIGNLK-SLSGLELADNELSSSIP--HYLGNLTNLAAFYLYKNSLSGSIPSEIGN  369 (869)
Q Consensus       306 L~~n~~~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  369 (869)
                      +++|.+++..|..+..++ +|+.|++++|.+++..+  .....+...+.+.+..+.+....|..+.+
T Consensus       230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g  296 (306)
T 2z66_A          230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG  296 (306)
T ss_dssp             CTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred             CCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence            999999888888888874 89999999988876432  11122334444444555555455554443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=9.1e-29  Score=269.91  Aligned_cols=259  Identities=17%  Similarity=0.141  Sum_probs=184.9

Q ss_pred             CCcEEecCCCcCcCCCC-CcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEcc
Q 002896          468 KLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVS  546 (869)
Q Consensus       468 ~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls  546 (869)
                      +|++|++++|.+.+..+ .+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            45555555555544333 45556666666666666666666666666677777777777665544446667777777777


Q ss_pred             CCCCCCCCC-cCcCCCCCCCEEEccCC-cccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccc
Q 002896          547 VNNIIGSLP-PEIGDSSQLHVIDLSAN-HIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSN  624 (869)
Q Consensus       547 ~n~l~~~~p-~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  624 (869)
                      +|++.+..+ ..+..+++|++|++++| .+.+..+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+..
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  212 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL  212 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence            777764333 36677777777777777 3555556677778888888888888877777778888888888888888765


Q ss_pred             cccccccCCCCCCeeeCcCCcCCcccchhhh---cccccccccccccccCC----chhhhhcCCCCCcEEeCCCCCCCCC
Q 002896          625 SIPRSLGNLVKLHYLNLSTNQFIQEIPIKLE---KLIHLSELDLSHNFLGK----EIPSQICNMRSLEMLNLSHNNLSDF  697 (869)
Q Consensus       625 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~  697 (869)
                      ..+..+..+++|+.|++++|++++..+..+.   ....++.++++++.+++    .+|+.+..+++|++|++++|+++..
T Consensus       213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i  292 (353)
T 2z80_A          213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV  292 (353)
T ss_dssp             HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC
T ss_pred             chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc
Confidence            4444455678888888888888776554443   34567777777777765    4788999999999999999999976


Q ss_pred             cchhhhcCCCCcEEEccCCcccccCCCCc
Q 002896          698 IPRCFEEMNGLLYIDISYNELHGPIPNST  726 (869)
Q Consensus       698 ~p~~l~~l~~L~~L~ls~N~l~g~~p~~~  726 (869)
                      .+..|..+++|++|++++|+++|.||...
T Consensus       293 ~~~~~~~l~~L~~L~L~~N~~~~~~~~l~  321 (353)
T 2z80_A          293 PDGIFDRLTSLQKIWLHTNPWDCSCPRID  321 (353)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred             CHHHHhcCCCCCEEEeeCCCccCcCCCcH
Confidence            55557999999999999999999998443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=2.2e-29  Score=274.88  Aligned_cols=281  Identities=22%  Similarity=0.247  Sum_probs=177.0

Q ss_pred             CCCCCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCC
Q 002896           67 KISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGR  146 (869)
Q Consensus        67 ~~~~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~  146 (869)
                      ...+|.|.|+ |+.         ++.+ ++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+.+.
T Consensus        26 ~~~~C~~~~~-c~~---------~~~~-l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (353)
T 2z80_A           26 ASLSCDRNGI-CKG---------SSGS-LN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI   91 (353)
T ss_dssp             -CCEECTTSE-EEC---------CSTT-CS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             cCCCCCCCeE-eeC---------CCCC-cc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc
Confidence            4567999987 753         2222 32 4555544  4889999999998876666888889999999999988877


Q ss_pred             CCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCC-CccccccccceeeccccC-CCCCCCcccc
Q 002896          147 IPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIP-PSLGNLTNLAILYLHNNS-LSGSIPSEIG  224 (869)
Q Consensus       147 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~~~l~  224 (869)
                      .|..|+++++|++|++++|.+++..+..++++++|++|++++|++++..+ ..+.++++|++|++++|. +.+..+..+.
T Consensus        92 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  171 (353)
T 2z80_A           92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA  171 (353)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred             CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc
Confidence            77788888888888888888885544457888888888888887775443 356667777777777663 4444445555


Q ss_pred             CCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCee
Q 002896          225 NLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTL  304 (869)
Q Consensus       225 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L  304 (869)
                      ++++|++|++++|.+++..|..+..+++|++|++++|.+...                        .+..+..+++|++|
T Consensus       172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~~~~L~~L  227 (353)
T 2z80_A          172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL------------------------LEIFVDVTSSVECL  227 (353)
T ss_dssp             TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTH------------------------HHHHHHHTTTEEEE
T ss_pred             CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccc------------------------hhhhhhhcccccEE
Confidence            666666666666665555555555555555555555554322                        11122234444444


Q ss_pred             ecccccccCCCCCcc---cCCCCCCeEeccCCcccc----ccCCCCcCccccceeeccCCcCCCCCccc-cCCCCCCCEE
Q 002896          305 YLYTNSLSGSIPSEI---GNLKSLSGLELADNELSS----SIPHYLGNLTNLAAFYLYKNSLSGSIPSE-IGNLKSLSNL  376 (869)
Q Consensus       305 ~L~~n~~~~~~p~~l---~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L  376 (869)
                      ++++|.+++..+..+   ...+.++.++++++.+.+    .+|..+..+++|+.|++++|+++. +|.. +..+++|++|
T Consensus       228 ~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L  306 (353)
T 2z80_A          228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKI  306 (353)
T ss_dssp             EEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred             ECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEE
Confidence            444444443322221   123445556666555554    244556666777777777777763 4443 4677777777


Q ss_pred             EccCCcCCCC
Q 002896          377 DLSENKLSGS  386 (869)
Q Consensus       377 ~Ls~n~l~~~  386 (869)
                      ++++|.+.+.
T Consensus       307 ~L~~N~~~~~  316 (353)
T 2z80_A          307 WLHTNPWDCS  316 (353)
T ss_dssp             ECCSSCBCCC
T ss_pred             EeeCCCccCc
Confidence            7777776654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=2.9e-31  Score=311.52  Aligned_cols=393  Identities=14%  Similarity=0.059  Sum_probs=195.8

Q ss_pred             CCCCCCeEeccCCccccccCCCCcC-ccc-cceeeccCCcC-CC-CCccccCCCCCCCEEEccCCcCCCCCC----CCCC
Q 002896          321 NLKSLSGLELADNELSSSIPHYLGN-LTN-LAAFYLYKNSL-SG-SIPSEIGNLKSLSNLDLSENKLSGSIP----HSLG  392 (869)
Q Consensus       321 ~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~-L~~L~L~~n~l-~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~l~  392 (869)
                      .+++|++|++++|.+++..+..+.. ++. |++|++++|.- +. .++.....+++|++|++++|.+++...    ..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            4566666666666655544444433 223 66666666541 10 111112356666666666666554421    2233


Q ss_pred             CCCcccEEEccCCccc----cccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCc---ccCCccccC
Q 002896          393 NLTNLAILYLHSNTLL----GSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALS---GVIPEELGN  465 (869)
Q Consensus       393 ~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~~~~  465 (869)
                      .+++|++|++++|.+.    +.++..+..+++|++|++++|.+.+ ++..+..+++|+.|+++.....   +..+..+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            4566666666666665    2333444556666666666666655 3455566666666666543222   222334455


Q ss_pred             CCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccC-ccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEE
Q 002896          466 LVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNIS-ESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFD  544 (869)
Q Consensus       466 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~  544 (869)
                      +++|+.++++++........+..+++|++|++++|.+++... ..+..+++|++|+++++-..+.++.....+++|++|+
T Consensus       269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~  348 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR  348 (592)
T ss_dssp             CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred             cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence            566666666554322222234455566666666665443322 2235556666666652221222222234456666666


Q ss_pred             ccC-----------CCCCCC-CCcCcCCCCCCCEEEccCCcccccCCccccc-Ccccceeecc----Ccccccc-----C
Q 002896          545 VSV-----------NNIIGS-LPPEIGDSSQLHVIDLSANHIIGKIPSEIGK-LSSLIKLILR----RNQLFGQ-----L  602 (869)
Q Consensus       545 ls~-----------n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~L~----~n~l~~~-----~  602 (869)
                      +++           |.+++. ++.....+++|++|+++.|++++..+..+.. +++|+.|+++    .|.+++.     +
T Consensus       349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~  428 (592)
T 3ogk_B          349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV  428 (592)
T ss_dssp             EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH
T ss_pred             eecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH
Confidence            662           333321 1111233556666666666665554444443 5666666664    3444432     2


Q ss_pred             cccccCCcccccccccccc--cccccccccc-CCCCCCeeeCcCCcCCc-ccchhhhcccccccccccccccCCc-hhhh
Q 002896          603 PSELGSLIQLEYLDLSSNR--LSNSIPRSLG-NLVKLHYLNLSTNQFIQ-EIPIKLEKLIHLSELDLSHNFLGKE-IPSQ  677 (869)
Q Consensus       603 ~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~  677 (869)
                      +..+.++++|++|++++|.  +++..+..+. .+++|+.|+|++|++++ .++..+..+++|++|+|++|.+++. ++..
T Consensus       429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  508 (592)
T 3ogk_B          429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA  508 (592)
T ss_dssp             HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH
T ss_pred             HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH
Confidence            2224445566666665332  4433333332 25556666666666554 2333345556666666666665443 2333


Q ss_pred             hcCCCCCcEEeCCCCCCCCCcchhh-hcCCCCcEEEcc
Q 002896          678 ICNMRSLEMLNLSHNNLSDFIPRCF-EEMNGLLYIDIS  714 (869)
Q Consensus       678 l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls  714 (869)
                      ...+++|++|+|++|++++.....+ ..++.+....+.
T Consensus       509 ~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~  546 (592)
T 3ogk_B          509 VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP  546 (592)
T ss_dssp             HHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred             HHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEec
Confidence            3455666666666666555432222 233444444333

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.4e-27  Score=269.63  Aligned_cols=234  Identities=22%  Similarity=0.217  Sum_probs=205.9

Q ss_pred             CCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEc
Q 002896          490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDL  569 (869)
Q Consensus       490 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L  569 (869)
                      +++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            56788888888888887888888888888888888888888888888888888888888888777777888889999999


Q ss_pred             cCCcccccCCcccccCcccceeeccCcc-ccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCc
Q 002896          570 SANHIIGKIPSEIGKLSSLIKLILRRNQ-LFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ  648 (869)
Q Consensus       570 s~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  648 (869)
                      ++|++.+..+..+.++++|+.|++++|. +....+..|..+++|++|++++|++++. | .+..+++|+.|+|++|++++
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence            9998887777778889999999999854 4444455688999999999999999864 4 58899999999999999999


Q ss_pred             ccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCC
Q 002896          649 EIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS  725 (869)
Q Consensus       649 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~  725 (869)
                      ..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.|.|...
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~  309 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL  309 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2.7e-28  Score=260.56  Aligned_cols=234  Identities=22%  Similarity=0.253  Sum_probs=184.1

Q ss_pred             CCCCEEECcCCcCccccCccccCCCCCCEEeCCCCccccc--CCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEE
Q 002896          490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQ--ISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVI  567 (869)
Q Consensus       490 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L  567 (869)
                      ++|++|++++|.++...+..|..+++|++|++++|.++..  .+..+..+++|++|++++|.+.+ +|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence            4555566666655554444556666666666666666532  23444456677777777776653 45556777788888


Q ss_pred             EccCCcccccCC-cccccCcccceeeccCccccccCcccccCCccccccccccccccc-cccccccCCCCCCeeeCcCCc
Q 002896          568 DLSANHIIGKIP-SEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSN-SIPRSLGNLVKLHYLNLSTNQ  645 (869)
Q Consensus       568 ~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~  645 (869)
                      ++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|+.|++++|+
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            888887776544 467778888888888888888888888888889999999998887 678889999999999999999


Q ss_pred             CCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCC-CCcEEEccCCcccccCCC
Q 002896          646 FIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMN-GLLYIDISYNELHGPIPN  724 (869)
Q Consensus       646 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~~p~  724 (869)
                      +++..|..+..+++|++|+|++|++++..+..+..+++|+.|++++|++++..|..+..++ +|++|++++|+++|.|+.
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence            9888888899999999999999999888888899999999999999999999999998884 999999999999998764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=4.4e-28  Score=260.69  Aligned_cols=226  Identities=24%  Similarity=0.303  Sum_probs=178.1

Q ss_pred             CCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceee
Q 002896          130 LSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILY  209 (869)
Q Consensus       130 l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  209 (869)
                      ..++++|+|++|.+. .+|..++++++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..++++++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            467788888888877 67777777888888888888887 77777888888888888888877 6677788888888888


Q ss_pred             ccccCCCCCCCccccC---------CCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCcc
Q 002896          210 LHNNSLSGSIPSEIGN---------LKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSIL  280 (869)
Q Consensus       210 L~~n~l~~~~~~~l~~---------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  280 (869)
                      +++|.+.+.+|..+..         +++|++|++++|.++ .+|..++.+++|++|++++|.+++ +|..+..+++|++|
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L  234 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL  234 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence            8887777777776654         778888888888877 677777888888888888888874 55567778888888


Q ss_pred             ccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCC
Q 002896          281 ELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLS  360 (869)
Q Consensus       281 ~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  360 (869)
                      ++++|++.+.+|..++.+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++++++|+.+++..+.+.
T Consensus       235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            88888887788888888888888888888887788877888888888888888888888888888888888877766544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=2e-27  Score=267.34  Aligned_cols=252  Identities=23%  Similarity=0.222  Sum_probs=211.0

Q ss_pred             cEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCC
Q 002896          470 TMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN  549 (869)
Q Consensus       470 ~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~  549 (869)
                      ..++.++..+......+  .++++.|++++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|+
T Consensus        46 ~~v~c~~~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           46 SKVICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             CEEECCSCCCSSCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             CEEEeCCCCcCcCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            34444444444322222  2567778888888877777788888888888888888887777788888888888888888


Q ss_pred             CCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccc-cccCcccccCCccccccccccccccccccc
Q 002896          550 IIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL-FGQLPSELGSLIQLEYLDLSSNRLSNSIPR  628 (869)
Q Consensus       550 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  628 (869)
                      +++..+..+..+++|++|++++|++.+..+..+.++++|+.|++++|.. ....+..|.++++|++|++++|.++. +| 
T Consensus       124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-  201 (440)
T 3zyj_A          124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-  201 (440)
T ss_dssp             CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-
T ss_pred             CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-
Confidence            8877667788888899999999888877777788889999999988544 44445578899999999999999984 45 


Q ss_pred             cccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCC
Q 002896          629 SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGL  708 (869)
Q Consensus       629 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  708 (869)
                      .+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|
T Consensus       202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEccCCcccccCCCC
Q 002896          709 LYIDISYNELHGPIPNS  725 (869)
Q Consensus       709 ~~L~ls~N~l~g~~p~~  725 (869)
                      +.|++++|++.|.|...
T Consensus       282 ~~L~L~~Np~~CdC~l~  298 (440)
T 3zyj_A          282 ERIHLHHNPWNCNCDIL  298 (440)
T ss_dssp             CEEECCSSCEECSSTTH
T ss_pred             CEEEcCCCCccCCCCch
Confidence            99999999999998744

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.3e-27  Score=252.51  Aligned_cols=213  Identities=23%  Similarity=0.207  Sum_probs=159.9

Q ss_pred             CCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCc-ccccCCcccccCcccceee
Q 002896          514 PKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANH-IIGKIPSEIGKLSSLIKLI  592 (869)
Q Consensus       514 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~  592 (869)
                      +++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|. +.+..|..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            456666666666665555556666666666666666666556666666677777777765 5555466666777777777


Q ss_pred             ccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCC
Q 002896          593 LRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGK  672 (869)
Q Consensus       593 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  672 (869)
                      +++|.+.+..|..+..+++|++|++++|++++..+..|+.+++|+.|+|++|++++..+..+..+++|++|++++|.+++
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            77777777667777777788888888888877666677888888888888888877666678888888888888888888


Q ss_pred             chhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCc
Q 002896          673 EIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNST  726 (869)
Q Consensus       673 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~  726 (869)
                      ..|..|..+++|+.|++++|++++..+..+..+++|++|++++|+++|.|+..+
T Consensus       192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~  245 (285)
T 1ozn_A          192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP  245 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH
T ss_pred             cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHH
Confidence            888888888888888888888888877888888888888888888888877543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=3.8e-30  Score=302.00  Aligned_cols=375  Identities=13%  Similarity=0.068  Sum_probs=289.4

Q ss_pred             CccccceeeccCCcCCCCCccccCC-CCC-CCEEEccCCc-CCC-CCCCCCCCCCcccEEEccCCccccc----cChhhh
Q 002896          345 NLTNLAAFYLYKNSLSGSIPSEIGN-LKS-LSNLDLSENK-LSG-SIPHSLGNLTNLAILYLHSNTLLGS----IPREIG  416 (869)
Q Consensus       345 ~l~~L~~L~L~~n~l~~~~~~~~~~-l~~-L~~L~Ls~n~-l~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~  416 (869)
                      .+++|++|++++|.+++..+..+.. ++. |++|++++|. ++. .++.....+++|++|++++|.+.+.    ++....
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            6789999999999888766666655 444 9999999986 221 1122234689999999999998765    444567


Q ss_pred             CCCCCCccccCCCcCc----ccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCc----CCCCCcCC
Q 002896          417 NLKSLFELQLGDNKLS----NSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ----GSIPNLRN  488 (869)
Q Consensus       417 ~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~l~~  488 (869)
                      .+++|++|++++|.++    +.++..+.++++|+.|++++|.+.+ ++..+..+++|++|+++.+...    .....+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            8899999999999997    3445556789999999999999887 5678899999999999864332    11226778


Q ss_pred             CCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCC-cCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEE
Q 002896          489 LTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS-SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVI  567 (869)
Q Consensus       489 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L  567 (869)
                      +++|+.++++++. ...++..+..+++|++|++++|.+++... ..+..+++|++|+++++-..+.++.....+++|++|
T Consensus       269 ~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          269 PRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             CTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred             cccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence            8999999998863 34566677888999999999999765443 346789999999999432222334444678899999


Q ss_pred             EccC-----------CcccccC-CcccccCcccceeeccCccccccCcccccC-Cccccccccc----ccccccc-----
Q 002896          568 DLSA-----------NHIIGKI-PSEIGKLSSLIKLILRRNQLFGQLPSELGS-LIQLEYLDLS----SNRLSNS-----  625 (869)
Q Consensus       568 ~Ls~-----------n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls----~n~l~~~-----  625 (869)
                      ++++           |.+++.. +.....+++|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++.     
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~  427 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG  427 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence            9993           5665432 222456899999999999998877766655 8899999996    6677763     


Q ss_pred             ccccccCCCCCCeeeCcCCc--CCcccchhhhc-ccccccccccccccCCc-hhhhhcCCCCCcEEeCCCCCCCCC-cch
Q 002896          626 IPRSLGNLVKLHYLNLSTNQ--FIQEIPIKLEK-LIHLSELDLSHNFLGKE-IPSQICNMRSLEMLNLSHNNLSDF-IPR  700 (869)
Q Consensus       626 ~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~-~p~  700 (869)
                      ++..+.++++|+.|++++|.  +++..+..+.. +++|++|+|++|++++. ++..+..+++|++|+|++|++++. ++.
T Consensus       428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  507 (592)
T 3ogk_B          428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA  507 (592)
T ss_dssp             HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred             HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence            44457789999999998654  77666666654 89999999999999874 566678899999999999998765 445


Q ss_pred             hhhcCCCCcEEEccCCccccc
Q 002896          701 CFEEMNGLLYIDISYNELHGP  721 (869)
Q Consensus       701 ~l~~l~~L~~L~ls~N~l~g~  721 (869)
                      ....+++|++|++++|+++..
T Consensus       508 ~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          508 AVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHhcCccCeeECcCCcCCHH
Confidence            557899999999999998764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=6.5e-27  Score=247.07  Aligned_cols=253  Identities=22%  Similarity=0.164  Sum_probs=205.9

Q ss_pred             cEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCC
Q 002896          470 TMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN  549 (869)
Q Consensus       470 ~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~  549 (869)
                      ++++.+++.+......  ..++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            3445555544433222  24577788888888877777778888888888888888888778888888888888888887


Q ss_pred             -CCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccc
Q 002896          550 -IIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPR  628 (869)
Q Consensus       550 -l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  628 (869)
                       +....|..+..+++|++|++++|.+++..|..+.++++|++|++++|.+.+..+..+..+++|++|++++|++++..+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  171 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence             6666678888888999999999998887788888899999999999999888888888999999999999999977777


Q ss_pred             cccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCC
Q 002896          629 SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGL  708 (869)
Q Consensus       629 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  708 (869)
                      .|..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++....+.. .-...+
T Consensus       172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l  250 (285)
T 1ozn_A          172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWL  250 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHH
T ss_pred             HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHH
Confidence            8999999999999999999988999999999999999999999988888999999999999999998754421 111234


Q ss_pred             cEEEccCCcccccCCCC
Q 002896          709 LYIDISYNELHGPIPNS  725 (869)
Q Consensus       709 ~~L~ls~N~l~g~~p~~  725 (869)
                      +.+..+.|.+.|..|..
T Consensus       251 ~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          251 QKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             HHCCSEECCCBEEESGG
T ss_pred             HhcccccCccccCCchH
Confidence            55567889999988853

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=2.6e-26  Score=259.26  Aligned_cols=242  Identities=27%  Similarity=0.289  Sum_probs=122.1

Q ss_pred             cEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCc
Q 002896          110 KYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSN  189 (869)
Q Consensus       110 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  189 (869)
                      +.++.++..++ .+|..+.  ++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus        57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            44555555554 3444333  45566666666655555555566666666666666655555555555566666666666


Q ss_pred             ccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCc-ccccCCCCCCCEEEccCCCCCCCCC
Q 002896          190 FLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSI-PLFLGNLTNLDTLYLRNNSFSSSIP  268 (869)
Q Consensus       190 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~  268 (869)
                      ++++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|+..+.+ +..|..+++|++|++++|++++. |
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~  212 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P  212 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c
Confidence            555555555555556666666665555444445555666666666553322222 22355555555555555555432 2


Q ss_pred             CCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccc
Q 002896          269 SEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTN  348 (869)
Q Consensus       269 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  348 (869)
                       .+..+++|++|++++|++++..|..|.++++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++
T Consensus       213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  291 (452)
T 3zyi_A          213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY  291 (452)
T ss_dssp             -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred             -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence             2444445555555555544444444444444444444444444444444444444444444444444333333333333


Q ss_pred             cceeeccC
Q 002896          349 LAAFYLYK  356 (869)
Q Consensus       349 L~~L~L~~  356 (869)
                      |+.|++++
T Consensus       292 L~~L~L~~  299 (452)
T 3zyi_A          292 LVELHLHH  299 (452)
T ss_dssp             CCEEECCS
T ss_pred             CCEEEccC
Confidence            33333333

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.9e-28  Score=262.13  Aligned_cols=251  Identities=24%  Similarity=0.261  Sum_probs=151.9

Q ss_pred             CCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccC-CCCCCcccC-------CCCCCCEEEcCCCCCCCCCCccc
Q 002896          104 GNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQF-SGRIPPQIG-------HLSYIEALHLFKNQLSGPIPHEV  175 (869)
Q Consensus       104 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~-~~~~p~~l~-------~l~~L~~L~L~~n~l~~~~p~~~  175 (869)
                      +..++|++|++++|.+  .+|..+...  |++|+|++|.+ .+.+|..+.       ++++|++|++++|.+++.+|..+
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            4455677777777777  566655443  77777777777 345665554       67777777777777777666655


Q ss_pred             --cCCCcCceeeccCcccCCCCCCccccc-----cccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCC--cccc
Q 002896          176 --GGLSSLNELALTSNFLKGSIPPSLGNL-----TNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGS--IPLF  246 (869)
Q Consensus       176 --~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~  246 (869)
                        +++++|++|++++|++++. |..++.+     ++|++|++++|.+.+..|..++.+++|++|++++|++.+.  .+..
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence              6677777777777777666 6656555     6666666666666665556666666666666666665543  1222


Q ss_pred             c--CCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCC-CcccCCC
Q 002896          247 L--GNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIP-SEIGNLK  323 (869)
Q Consensus       247 l--~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p-~~l~~l~  323 (869)
                      +  +.+++|++|++++|.+++. +                    ......+..+++|++|++++|.+++..| ..+..++
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~-~--------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  253 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETP-S--------------------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS  253 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCH-H--------------------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred             HHhccCCCCCEEECCCCcCcch-H--------------------HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence            2  4455555555555544411 0                    1111222345566666666666655443 3344556


Q ss_pred             CCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCC
Q 002896          324 SLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSG  385 (869)
Q Consensus       324 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  385 (869)
                      +|+.|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            6666666666666 4454444  6667777777776655 44 6666777777777776654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=9.5e-26  Score=253.67  Aligned_cols=235  Identities=25%  Similarity=0.233  Sum_probs=146.3

Q ss_pred             cCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccC
Q 002896           98 IIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGG  177 (869)
Q Consensus        98 ~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  177 (869)
                      .+|..+.  +++++|+|++|.+++..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|.+
T Consensus        57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  134 (440)
T 3zyj_A           57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY  134 (440)
T ss_dssp             SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred             cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence            4555444  67888888888888777778888888888888888887766777888888888888888877655556777


Q ss_pred             CCcCceeeccCcccCCCCCCccccccccceeeccccC-CCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEE
Q 002896          178 LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNS-LSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTL  256 (869)
Q Consensus       178 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  256 (869)
                      +++|++|++++|.+++..+..+.++++|++|++++|. +....+..|.++++|++|++++|.++ .+| .+..+++|++|
T Consensus       135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L  212 (440)
T 3zyj_A          135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDEL  212 (440)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEE
T ss_pred             cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEE
Confidence            7777777777777776656666666666666666643 33222334555666666666666555 223 24455555555


Q ss_pred             EccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccc
Q 002896          257 YLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELS  336 (869)
Q Consensus       257 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~  336 (869)
                      ++++|.+++..|..|.++++|+.|++++|++++..+..|.++++|++|+|++|++++..+..+..+++|+.|++++|.+.
T Consensus       213 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            55555555544555555555555555555555444444555555555555555555444444444455555555554443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=1.5e-25  Score=234.39  Aligned_cols=217  Identities=29%  Similarity=0.331  Sum_probs=150.7

Q ss_pred             CCCCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCC
Q 002896           68 ISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRI  147 (869)
Q Consensus        68 ~~~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~  147 (869)
                      .++|.|.|+.|...+.++.+++++.. ++ .+|..+.  +++++|+|++|.+++..+..|.++++|++|++++|.+++..
T Consensus         2 ~~~C~~~~~~C~c~~~~~~l~~~~~~-l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSCNNNKNSVDCSSKK-LT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBEEETTTTEEECTTSC-CS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCEeCCCCCEEEccCCC-CC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            37899999999755556678887776 55 3565554  57888888888888666667888888888888888887555


Q ss_pred             CcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCC
Q 002896          148 PPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLK  227 (869)
Q Consensus       148 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  227 (869)
                      +..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..++
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  157 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT  157 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence            55567788888888888887766666667777777777777777766666667777777777777776655555566666


Q ss_pred             CCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCC
Q 002896          228 SLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN  288 (869)
Q Consensus       228 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~  288 (869)
                      +|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            6666666666666555555666666666666666666544444555555556665555543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.2e-27  Score=256.43  Aligned_cols=267  Identities=23%  Similarity=0.210  Sum_probs=183.5

Q ss_pred             CCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCC
Q 002896          421 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRN  500 (869)
Q Consensus       421 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n  500 (869)
                      ++..+++.+.+.......+..+++|+.|++++|.+++..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN   90 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence            3445666666655555555566677777777777777666666666666666666666654332 444444555555444


Q ss_pred             cCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCc
Q 002896          501 HLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPS  580 (869)
Q Consensus       501 ~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  580 (869)
                                              .+++..     ..++|++|++++|++++..+.   .+++|++|++++|++++..+.
T Consensus        91 ------------------------~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~  138 (317)
T 3o53_A           91 ------------------------YVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL  138 (317)
T ss_dssp             ------------------------EEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGB
T ss_pred             ------------------------cccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccch
Confidence                                    444322     124555555555555543322   245677777777777766666


Q ss_pred             ccccCcccceeeccCccccccCcccc-cCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccc
Q 002896          581 EIGKLSSLIKLILRRNQLFGQLPSEL-GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIH  659 (869)
Q Consensus       581 ~l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  659 (869)
                      .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++. + ....+++|+.|+|++|++++. |..+..+++
T Consensus       139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~  215 (317)
T 3o53_A          139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAG  215 (317)
T ss_dssp             CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTT
T ss_pred             hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCc
Confidence            77777788888888887777766665 3678888888888888765 3 333578899999999998764 445888899


Q ss_pred             cccccccccccCCchhhhhcCCCCCcEEeCCCCCCC-CCcchhhhcCCCCcEEEcc-CCcccccCCC
Q 002896          660 LSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS-DFIPRCFEEMNGLLYIDIS-YNELHGPIPN  724 (869)
Q Consensus       660 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-~N~l~g~~p~  724 (869)
                      |++|+|++|+++ .+|..+..+++|+.|++++|+++ +.+|..+..++.|+.++++ .+.++|..|.
T Consensus       216 L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             ccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            999999999986 56777888899999999999998 7778888888888888888 4456665553

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=5.4e-27  Score=251.41  Aligned_cols=264  Identities=21%  Similarity=0.175  Sum_probs=171.6

Q ss_pred             cEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCC
Q 002896          398 AILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN  477 (869)
Q Consensus       398 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  477 (869)
                      +..+++.+.+.......+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+  +..+++|++|++++|
T Consensus        13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN   90 (317)
T ss_dssp             EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred             eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence            334444444443333444455566666666666666555566666666666666666665443  666666666666666


Q ss_pred             cCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcC
Q 002896          478 QLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPE  557 (869)
Q Consensus       478 ~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~  557 (869)
                      .+.+.    ...++|++|++++|.+++..+..   +++|++|++++|.+++..+..+..+++|++|++++|.+++..+..
T Consensus        91 ~l~~l----~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  163 (317)
T 3o53_A           91 YVQEL----LVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE  163 (317)
T ss_dssp             EEEEE----EECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred             ccccc----cCCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence            66532    23366777777777776655443   456777777777777766667777777777777777777665555


Q ss_pred             c-CCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCC
Q 002896          558 I-GDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKL  636 (869)
Q Consensus       558 l-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  636 (869)
                      + ..+++|++|++++|.+++. + ....+++|++|++++|++.+..+. +..+++|++|++++|+++ .+|..+..+++|
T Consensus       164 ~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L  239 (317)
T 3o53_A          164 LAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNL  239 (317)
T ss_dssp             GGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred             HhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCCC
Confidence            5 3567777777777777654 2 233467777777777777655443 667777777777777777 356667777777


Q ss_pred             CeeeCcCCcCC-cccchhhhccccccccccccc-ccCCch
Q 002896          637 HYLNLSTNQFI-QEIPIKLEKLIHLSELDLSHN-FLGKEI  674 (869)
Q Consensus       637 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N-~l~~~~  674 (869)
                      +.|++++|++. +.+|..+..++.|+.|++++| .+.+..
T Consensus       240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~  279 (317)
T 3o53_A          240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN  279 (317)
T ss_dssp             CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred             CEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence            78888877777 666777777777777777733 344433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.6e-27  Score=254.94  Aligned_cols=256  Identities=22%  Similarity=0.260  Sum_probs=180.9

Q ss_pred             CCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCC-CCCCccccCCCcCceeeccCcccCCCCCCcccccccc
Q 002896          127 IGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLS-GPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNL  205 (869)
Q Consensus       127 l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  205 (869)
                      ++..++|++|++++|.+  .+|..+...  |++|++++|.+. ..+|..+..                 ....+.++++|
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~-----------------~~~~~~~l~~L   97 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILF-----------------GALRVLGISGL   97 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHH-----------------HHHHHHTTSCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHH-----------------HHHHhcCcCCc
Confidence            45556677777777776  555544332  444455554442 223332220                 00000045556


Q ss_pred             ceeeccccCCCCCCCccc--cCCCCCCEEEccCCcCCCCcccccCCC-----CCCCEEEccCCCCCCCCCCCCCCCccCC
Q 002896          206 AILYLHNNSLSGSIPSEI--GNLKSLSSLALGNNKLCGSIPLFLGNL-----TNLDTLYLRNNSFSSSIPSEIGNLKSLS  278 (869)
Q Consensus       206 ~~L~L~~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~  278 (869)
                      ++|++++|.+++.+|..+  ..+++|++|++++|.+++. |..++.+     ++|++|++++|++++..|..++++++|+
T Consensus        98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~  176 (312)
T 1wwl_A           98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS  176 (312)
T ss_dssp             CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred             cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence            666666666665555554  5666666666666666655 5555544     7788888888888777777788888888


Q ss_pred             ccccCcccCCcc--cCccc--cCCCCCCeeecccccccCC--CC-CcccCCCCCCeEeccCCccccccC-CCCcCccccc
Q 002896          279 ILELGENRLNGS--IPLSL--GNLTNLDTLYLYTNSLSGS--IP-SEIGNLKSLSGLELADNELSSSIP-HYLGNLTNLA  350 (869)
Q Consensus       279 ~L~L~~n~~~~~--~p~~l--~~l~~L~~L~L~~n~~~~~--~p-~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~  350 (869)
                      +|++++|++.+.  .+..+  ..+++|++|++++|.+++.  ++ ..+..+++|+.|++++|.+++..| ..+..+++|+
T Consensus       177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  256 (312)
T 1wwl_A          177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN  256 (312)
T ss_dssp             EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred             EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence            888888887654  23344  7889999999999998732  22 334678999999999999998775 5667789999


Q ss_pred             eeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCcccc
Q 002896          351 AFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLG  409 (869)
Q Consensus       351 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  409 (869)
                      +|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            9999999999 7777776  8999999999999976 65 8999999999999999875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.3e-26  Score=262.91  Aligned_cols=245  Identities=24%  Similarity=0.222  Sum_probs=155.1

Q ss_pred             CCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeC
Q 002896          442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDL  521 (869)
Q Consensus       442 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  521 (869)
                      +++|+.|++++|.+++..|..|..+++|++|++++|.+.+..+                         +..+++|++|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------------------l~~l~~L~~L~L   87 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-------------------------LESLSTLRTLDL   87 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-------------------------CTTCTTCCEEEC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-------------------------cccCCCCCEEEe
Confidence            3456666666666666555555555555555555555543332                         444445555555


Q ss_pred             CCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCcccccc
Q 002896          522 SHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQ  601 (869)
Q Consensus       522 s~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  601 (869)
                      ++|.+++..+     .++|++|++++|.+++..+.   .+++|+.|++++|.+++..|..++.+++|+.|++++|.+.+.
T Consensus        88 s~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (487)
T 3oja_A           88 NNNYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (487)
T ss_dssp             CSSEEEEEEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE
T ss_pred             cCCcCCCCCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc
Confidence            5555443221     24556666666655544332   235677777777777766666677777777777777777776


Q ss_pred             Cccccc-CCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcC
Q 002896          602 LPSELG-SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICN  680 (869)
Q Consensus       602 ~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  680 (869)
                      .|..+. .+++|++|+|++|.+++..  ....+++|+.|+|++|++++.+| .+..+++|+.|+|++|.+++ +|..+..
T Consensus       160 ~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~  235 (487)
T 3oja_A          160 NFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRF  235 (487)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCC
T ss_pred             ChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhcc
Confidence            666664 5777777777777777652  23357777888888887776444 47777777777777777764 5666777


Q ss_pred             CCCCcEEeCCCCCCC-CCcchhhhcCCCCcEEEcc-------CCcccccCC
Q 002896          681 MRSLEMLNLSHNNLS-DFIPRCFEEMNGLLYIDIS-------YNELHGPIP  723 (869)
Q Consensus       681 l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-------~N~l~g~~p  723 (869)
                      +++|+.|++++|++. +.+|..+..++.|+.++++       .|+..|.+|
T Consensus       236 l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~  286 (487)
T 3oja_A          236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP  286 (487)
T ss_dssp             CTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred             CCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence            777777777777777 5566667777777777665       555555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.1e-24  Score=251.83  Aligned_cols=268  Identities=25%  Similarity=0.287  Sum_probs=153.0

Q ss_pred             CCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEc
Q 002896          371 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLAL  450 (869)
Q Consensus       371 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l  450 (869)
                      .+++.|++++|.++ .+|..+.  ++|+.|++++|.++ .+|.   .+++|++|++++|++++. |.   .+++|++|++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEEC
Confidence            35888999999888 5666554  68888888888887 4444   457788888888877653 32   5567777777


Q ss_pred             cCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccC
Q 002896          451 YDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQI  530 (869)
Q Consensus       451 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~  530 (869)
                      ++|.+++..+    .+++|+.|++++|++.+...   .+++|++|++++|.+++..                        
T Consensus       109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~------------------------  157 (622)
T 3g06_A          109 FSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLP------------------------  157 (622)
T ss_dssp             CSCCCCCCCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC------------------------
T ss_pred             cCCcCCCCCC----CCCCcCEEECCCCCCCcCCC---CCCCCCEEECcCCcCCCcC------------------------
Confidence            7777665322    34566666666666554222   1245555555555544321                        


Q ss_pred             CcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCc
Q 002896          531 SSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLI  610 (869)
Q Consensus       531 ~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  610 (869)
                       .   .+++|+.|++++|.+++ +|   ..+++|+.|++++|++++ +|.   ..++|+.|++++|.+... |.   .++
T Consensus       158 -~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l-~~---~~~  221 (622)
T 3g06_A          158 -A---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSL-PA---LPS  221 (622)
T ss_dssp             -C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC-CC---CCT
T ss_pred             -C---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccccc-CC---CCC
Confidence             1   12344444444444443 22   223445555555555543 222   124555555555555432 21   235


Q ss_pred             cccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCC
Q 002896          611 QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLS  690 (869)
Q Consensus       611 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  690 (869)
                      +|++|++++|.+++ +|   ..+++|+.|+|++|++++ +|.   .+++|+.|+|++|+|+ .+|..+..+++|+.|+|+
T Consensus       222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred             CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence            56666666666654 33   334566666666666653 333   4456666666666665 455666666666666666


Q ss_pred             CCCCCCCcchhhhcC
Q 002896          691 HNNLSDFIPRCFEEM  705 (869)
Q Consensus       691 ~N~l~~~~p~~l~~l  705 (869)
                      +|++++.+|..+..+
T Consensus       293 ~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          293 GNPLSERTLQALREI  307 (622)
T ss_dssp             SCCCCHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHhc
Confidence            666666666655543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=4.2e-25  Score=231.94  Aligned_cols=214  Identities=25%  Similarity=0.237  Sum_probs=178.1

Q ss_pred             CCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeec
Q 002896          514 PKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLIL  593 (869)
Q Consensus       514 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  593 (869)
                      +++++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            45777777777777666667777777777777777777666667777888888888888888777777888888888888


Q ss_pred             cCccccccCcccccCCcccccccccccccccc-ccccccCCCCCCeeeCcCCcCCcccchhhhcccccc----ccccccc
Q 002896          594 RRNQLFGQLPSELGSLIQLEYLDLSSNRLSNS-IPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLS----ELDLSHN  668 (869)
Q Consensus       594 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N  668 (869)
                      ++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|+.|++++|++++..+..+..+++|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            88888877777788889999999999998874 588999999999999999999988888888888887    8999999


Q ss_pred             ccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCccc
Q 002896          669 FLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAF  728 (869)
Q Consensus       669 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~~~  728 (869)
                      .+++..+..+.. .+|+.|++++|++++..+..|..+++|++|++++|+++|.||....+
T Consensus       188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l  246 (276)
T 2z62_A          188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  246 (276)
T ss_dssp             CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred             cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHH
Confidence            998776665544 58999999999999988888999999999999999999999866444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=8.8e-24  Score=244.24  Aligned_cols=269  Identities=24%  Similarity=0.274  Sum_probs=192.1

Q ss_pred             cccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCcccc
Q 002896          347 TNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQL  426 (869)
Q Consensus       347 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  426 (869)
                      .+++.|++++|.++ .+|..+.  ++|++|++++|.++. +|.   .+++|++|++++|.+++ +|.   .+++|++|++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence            35899999999998 6777665  899999999999984 554   57899999999999984 555   6789999999


Q ss_pred             CCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCcccc
Q 002896          427 GDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNI  506 (869)
Q Consensus       427 s~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~  506 (869)
                      ++|.+++...    .+++|+.|++++|.+++. |..   +++|++|++++|.+.+...   .+++|+.|++++|.++...
T Consensus       109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~l-p~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~  177 (622)
T 3g06_A          109 FSNPLTHLPA----LPSGLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP  177 (622)
T ss_dssp             CSCCCCCCCC----CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC
T ss_pred             cCCcCCCCCC----CCCCcCEEECCCCCCCcC-CCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc
Confidence            9999987543    578999999999999874 442   5899999999999986432   3578999999999888643


Q ss_pred             CccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCc
Q 002896          507 SESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLS  586 (869)
Q Consensus       507 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  586 (869)
                          ..+++|+.|++++|.+++. |.   ..++|+.|++++|.++. +|.   .+++|++|++++|++++ +|   ..++
T Consensus       178 ----~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~  241 (622)
T 3g06_A          178 ----MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPS  241 (622)
T ss_dssp             ----CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCT
T ss_pred             ----ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCC
Confidence                4467888888888888753 32   24677777777777763 332   23567777777777764 34   3345


Q ss_pred             ccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhccc
Q 002896          587 SLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLI  658 (869)
Q Consensus       587 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  658 (869)
                      +|+.|++++|.+.. +|.   .+++|+.|+|++|+++ .+|..+.++++|+.|+|++|++++.+|..+..++
T Consensus       242 ~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          242 ELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             cCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            66666666666553 222   3455566666666655 4455555566666666666666555555554443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=3.3e-24  Score=224.10  Aligned_cols=208  Identities=22%  Similarity=0.265  Sum_probs=170.1

Q ss_pred             CCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeecc
Q 002896          515 KLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILR  594 (869)
Q Consensus       515 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  594 (869)
                      ..+.++++++.++. +|..+.  +++++|++++|++++..+..+..+++|++|++++|++++..+..+.++++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            34566666666653 333332  467777777777776666677777777778887777775555556778888888888


Q ss_pred             CccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCch
Q 002896          595 RNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI  674 (869)
Q Consensus       595 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  674 (869)
                      +|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|+|++|++.+..+..+..+++|++|+|++|++++..
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            88887777777788888999999999998888888899999999999999998877777899999999999999998888


Q ss_pred             hhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCC
Q 002896          675 PSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS  725 (869)
Q Consensus       675 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~  725 (869)
                      +..|..+++|++|++++|++++..+..|..+++|+.|++++|++.|.|+..
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~  224 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI  224 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSS
T ss_pred             hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccH
Confidence            888999999999999999999988888999999999999999999998744

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=2.2e-28  Score=287.15  Aligned_cols=155  Identities=14%  Similarity=0.094  Sum_probs=74.7

Q ss_pred             CCCCCEEEccCCcccccCCcccc-cCcccceeecc--C----cccccc-----CcccccCCccccccccccccccccccc
Q 002896          561 SSQLHVIDLSANHIIGKIPSEIG-KLSSLIKLILR--R----NQLFGQ-----LPSELGSLIQLEYLDLSSNRLSNSIPR  628 (869)
Q Consensus       561 l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~--~----n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~  628 (869)
                      +++|++|+++.|.+++..+..+. .+++|+.|+++  +    +.+++.     ++..+..+++|+.|++++ .+++..+.
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~  449 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE  449 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence            45566665555555544333333 35566666665  2    222211     111133455556666654 44443333


Q ss_pred             cccC-CCCCCeeeCcCCcCCcccchhh-hcccccccccccccccCCchhh-hhcCCCCCcEEeCCCCCCCCCcchhh-hc
Q 002896          629 SLGN-LVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLGKEIPS-QICNMRSLEMLNLSHNNLSDFIPRCF-EE  704 (869)
Q Consensus       629 ~~~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~  704 (869)
                      .+.. +++|+.|+|++|.+++..+..+ ..+++|++|+|++|.+++.... ....+++|+.|++++|+++......+ ..
T Consensus       450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~  529 (594)
T 2p1m_B          450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQK  529 (594)
T ss_dssp             HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHH
T ss_pred             HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHh
Confidence            3333 5556666666666554444333 4455666666666665443333 22335566666666665533322333 33


Q ss_pred             CCCCcEEEccCC
Q 002896          705 MNGLLYIDISYN  716 (869)
Q Consensus       705 l~~L~~L~ls~N  716 (869)
                      ++.|+...+..+
T Consensus       530 lp~l~i~~~~~~  541 (594)
T 2p1m_B          530 MPKLNVEVIDER  541 (594)
T ss_dssp             CTTEEEEEECSS
T ss_pred             CCCCEEEEecCC
Confidence            455544444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.2e-25  Score=255.12  Aligned_cols=237  Identities=22%  Similarity=0.201  Sum_probs=168.6

Q ss_pred             CCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEE
Q 002896          417 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLR  496 (869)
Q Consensus       417 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~  496 (869)
                      .+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|  +..+++|++|++++|.+.+..    ..++|++|+
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~----~~~~L~~L~  105 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLH  105 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE----ECTTCCEEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC----CCCCcCEEE
Confidence            34489999999999999989999999999999999999998766  899999999999999987543    337788888


Q ss_pred             CcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcC-CCCCCCEEEccCCccc
Q 002896          497 LNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIG-DSSQLHVIDLSANHII  575 (869)
Q Consensus       497 l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~  575 (869)
                      +++|.+++..+..   +++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|++|++++|.++
T Consensus       106 L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            8888877665543   45677777777777777676777777777777777777766666554 5677777777777766


Q ss_pred             ccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCC-cccchhh
Q 002896          576 GKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFI-QEIPIKL  654 (869)
Q Consensus       576 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l  654 (869)
                      +..+  ...+++|+.|++++|.+++..|. +..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..+
T Consensus       183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          183 DVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             EEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             cccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            5422  23466666666666666654443 5566666666666666663 4555666666666666666665 4555555


Q ss_pred             hccccccccccc
Q 002896          655 EKLIHLSELDLS  666 (869)
Q Consensus       655 ~~l~~L~~L~Ls  666 (869)
                      ..++.|+.++++
T Consensus       259 ~~l~~L~~l~~~  270 (487)
T 3oja_A          259 SKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             HhCCCCcEEecc
Confidence            555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=8.5e-28  Score=282.21  Aligned_cols=406  Identities=13%  Similarity=0.110  Sum_probs=244.1

Q ss_pred             cccCCCCCCeeecccccccCC---CCCc------------ccCCCCCCeEeccCCccccccCCCCc-CccccceeeccCC
Q 002896          294 SLGNLTNLDTLYLYTNSLSGS---IPSE------------IGNLKSLSGLELADNELSSSIPHYLG-NLTNLAAFYLYKN  357 (869)
Q Consensus       294 ~l~~l~~L~~L~L~~n~~~~~---~p~~------------l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n  357 (869)
                      .+..+++|++|+++++.....   .|..            ...+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            345678899999988753211   1211            23466777777777776665544443 4677777777776


Q ss_pred             -cCCCC-CccccCCCCCCCEEEccCCcCCCCCCCCC----CCCCcccEEEccCCc--ccc-ccChhhhCCCCCCccccCC
Q 002896          358 -SLSGS-IPSEIGNLKSLSNLDLSENKLSGSIPHSL----GNLTNLAILYLHSNT--LLG-SIPREIGNLKSLFELQLGD  428 (869)
Q Consensus       358 -~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l----~~l~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~Ls~  428 (869)
                       .++.. ++..+..+++|++|++++|.+++..+..+    ..+++|++|++++|.  +.. .++..+..+++|++|++++
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~  220 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR  220 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence             33322 23333456777777777777665433332    245567777777665  111 1112223456666666666


Q ss_pred             CcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEE-ECcCCcCccccC
Q 002896          429 NKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRL-RLNRNHLTCNIS  507 (869)
Q Consensus       429 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L-~l~~n~l~~~~~  507 (869)
                      |...+.++..+..+++|+.|++..+...                 +..+.+.+..+.+.++++|+.+ .+.+.. ...++
T Consensus       221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~-----------------~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~  282 (594)
T 2p1m_B          221 AVPLEKLATLLQRAPQLEELGTGGYTAE-----------------VRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLP  282 (594)
T ss_dssp             TSCHHHHHHHHHHCTTCSEEECSBCCCC-----------------CCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGG
T ss_pred             CCcHHHHHHHHhcCCcceEcccccccCc-----------------cchhhHHHHHHHHhcCCCcccccCCcccc-hhhHH
Confidence            6222224455555666666665443210                 0011111111123344444444 222111 11222


Q ss_pred             ccccCCCCCCEEeCCCCcccccCC-cCcCCCCCCcEEEccCCCCCCC-CCcCcCCCCCCCEEEcc---------CCcccc
Q 002896          508 ESFGIHPKLTFIDLSHNNFYGQIS-SDWGKCPNLGTFDVSVNNIIGS-LPPEIGDSSQLHVIDLS---------ANHIIG  576 (869)
Q Consensus       508 ~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~L~Ls---------~n~l~~  576 (869)
                      ..+..+++|++|++++|.+++... ..+..+++|++|++++| +... ++.....+++|++|+++         .+.+++
T Consensus       283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~  361 (594)
T 2p1m_B          283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE  361 (594)
T ss_dssp             GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred             HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence            233345666666666666543221 22345677777777766 3211 11222346777777773         344543


Q ss_pred             cCCcccc-cCcccceeeccCccccccCccccc-CCccccccccc--c----ccccc-----cccccccCCCCCCeeeCcC
Q 002896          577 KIPSEIG-KLSSLIKLILRRNQLFGQLPSELG-SLIQLEYLDLS--S----NRLSN-----SIPRSLGNLVKLHYLNLST  643 (869)
Q Consensus       577 ~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls--~----n~l~~-----~~~~~~~~l~~L~~L~Ls~  643 (869)
                      .....+. ++++|+.|.+..|.+++.....+. .+++|+.|+++  +    +.+++     .++..+..+++|+.|+|++
T Consensus       362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~  441 (594)
T 2p1m_B          362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG  441 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence            3223333 489999999998988776655554 58999999999  4    45552     2223367889999999988


Q ss_pred             CcCCcccchhhhc-ccccccccccccccCCchhhhh-cCCCCCcEEeCCCCCCCCCcch-hhhcCCCCcEEEccCCccc
Q 002896          644 NQFIQEIPIKLEK-LIHLSELDLSHNFLGKEIPSQI-CNMRSLEMLNLSHNNLSDFIPR-CFEEMNGLLYIDISYNELH  719 (869)
Q Consensus       644 N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~  719 (869)
                       .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|++++..+. ....+++|++|++++|+++
T Consensus       442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             -SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             -cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence             777776677766 8999999999999988777666 6799999999999999765544 4456899999999999884

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.7e-23  Score=219.69  Aligned_cols=209  Identities=26%  Similarity=0.220  Sum_probs=150.8

Q ss_pred             CCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEc
Q 002896          490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDL  569 (869)
Q Consensus       490 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L  569 (869)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            34566666666666555556666666666666666666665556666666777777766666666666666777777777


Q ss_pred             cCCcccccCCcccccCcccceeeccCcccccc-CcccccCCccccccccccccccccccccccCCCCCC----eeeCcCC
Q 002896          570 SANHIIGKIPSEIGKLSSLIKLILRRNQLFGQ-LPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLH----YLNLSTN  644 (869)
Q Consensus       570 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~N  644 (869)
                      ++|++.+..+..++.+++|++|++++|.+.+. +|..+..+++|++|++++|++++..+..+..+++|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            77777665555666777777777777777664 477777777888888888887777666777666666    7889999


Q ss_pred             cCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcc
Q 002896          645 QFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP  699 (869)
Q Consensus       645 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  699 (869)
                      ++.+..+..+. ..+|++|++++|++++..+..|..+++|+.|++++|++++..|
T Consensus       188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            98766555444 3489999999999988877888999999999999999987543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=2.8e-23  Score=218.81  Aligned_cols=205  Identities=23%  Similarity=0.181  Sum_probs=148.4

Q ss_pred             CCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCccccee
Q 002896          512 IHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKL  591 (869)
Q Consensus       512 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  591 (869)
                      .++++++++++++.++. +|..+  .++++.|++++|.+++..+..+..+++|++|++++|.+++..+  .+.+++|+.|
T Consensus         8 ~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred             ccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEE
Confidence            33444444444444442 22222  1345555555555555555555566666666666666654322  1556667777


Q ss_pred             eccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccC
Q 002896          592 ILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLG  671 (869)
Q Consensus       592 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  671 (869)
                      ++++|.+. .+|..+..+++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++
T Consensus        83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            77777665 44556677888888888888888777788888899999999999988877777888999999999999998


Q ss_pred             CchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCC
Q 002896          672 KEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIP  723 (869)
Q Consensus       672 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p  723 (869)
                      +..+..|..+++|+.|+|++|+++. +|..+..+.+|+.+++++|++.|.|.
T Consensus       162 ~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          162 ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             ccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccCcCc
Confidence            7777788899999999999999995 56667777899999999999999874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=4.6e-23  Score=215.56  Aligned_cols=206  Identities=24%  Similarity=0.294  Sum_probs=106.2

Q ss_pred             CCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCce
Q 002896          104 GNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNE  183 (869)
Q Consensus       104 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  183 (869)
                      ..+++|+.|++++|.++. + ..++.+++|++|++++|.+.+ + ..++++++|++|++++|.+++..+..++++++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            345556666666665542 2 235556666666666666553 2 24555566666666666555544444555555555


Q ss_pred             eeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCC
Q 002896          184 LALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF  263 (869)
Q Consensus       184 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  263 (869)
                      |++++|++++..+..++++++|++|++++|.+++..+..++.+++|++|++++|++++..+..++.+++|++|++++|.+
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            55555555555444455555555555555555544444445555555555555555544444444555555555555555


Q ss_pred             CCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCccc
Q 002896          264 SSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIG  320 (869)
Q Consensus       264 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~  320 (869)
                      ++..+..+..+++|+.|++++|.+.+.       +++|+.++++.|.++|.+|.+++
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             CccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccc
Confidence            544444444445555555554444321       23344444444444444444433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1e-22  Score=212.90  Aligned_cols=185  Identities=21%  Similarity=0.185  Sum_probs=93.8

Q ss_pred             cCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCC
Q 002896          486 LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLH  565 (869)
Q Consensus       486 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~  565 (869)
                      +..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+
T Consensus        59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  136 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT  136 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence            33444444444444444332  2344445555555555555544444455555555555555555544444455555555


Q ss_pred             EEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCc
Q 002896          566 VIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQ  645 (869)
Q Consensus       566 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  645 (869)
                      +|++++|++++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus       137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence            55555555554444444555555555555555554444444555555555555555555555455555555555555555


Q ss_pred             CCcccchhhhcccccccccccccccCCchhhhhc
Q 002896          646 FIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC  679 (869)
Q Consensus       646 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  679 (869)
                      +.+.       +++|+.|+++.|.++|.+|..++
T Consensus       217 ~~~~-------~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          217 WDCT-------CPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             BCCC-------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             cccc-------CcHHHHHHHHHHhCCCcccCccc
Confidence            4432       22445555555555555554433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=9.2e-23  Score=210.60  Aligned_cols=183  Identities=23%  Similarity=0.237  Sum_probs=150.9

Q ss_pred             CCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccc
Q 002896          539 NLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLS  618 (869)
Q Consensus       539 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  618 (869)
                      +.++++++++.++ .+|..+.  +.++.|++++|++.+..+..+.++++|++|++++|.+.+..+..|..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            3455666666655 3444443  467777777777777777677777888888888888877777778888888888888


Q ss_pred             cccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCc
Q 002896          619 SNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFI  698 (869)
Q Consensus       619 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  698 (869)
                      +|++++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++|++++..+..|..+++|++|+|++|++++..
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            88888877788889999999999999998877777889999999999999998888888999999999999999999988


Q ss_pred             chhhhcCCCCcEEEccCCcccccCCC
Q 002896          699 PRCFEEMNGLLYIDISYNELHGPIPN  724 (869)
Q Consensus       699 p~~l~~l~~L~~L~ls~N~l~g~~p~  724 (869)
                      +..|..+++|++|++++|+++|.+..
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~c~~~~  197 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFDCSRCE  197 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred             HHHHhCCCCCCEEEeeCCceeCCccc
Confidence            88999999999999999999998443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=3.2e-22  Score=206.57  Aligned_cols=191  Identities=25%  Similarity=0.270  Sum_probs=130.8

Q ss_pred             CCCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCC
Q 002896           69 SPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIP  148 (869)
Q Consensus        69 ~~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p  148 (869)
                      +||.|.|.+|...  .+.+++++.+ +. .+|..+.  +.+++|+|++|.+++..+..+.++++|++|+|++|.+.+..|
T Consensus         3 ~Cp~~~gC~C~~~--~~~l~~~~~~-l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            3 TCETVTGCTCNEG--KKEVDCQGKS-LD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             -CHHHHSSEEEGG--GTEEECTTCC-CS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCceEcCCC--CeEEecCCCC-cc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            5889999999532  2346666655 44 4555554  577888888888877777777888888888888888877667


Q ss_pred             cccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCC
Q 002896          149 PQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKS  228 (869)
Q Consensus       149 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  228 (869)
                      ..|.++++|++|++++|.+++..+..|+++++|++|++++|++++..+..+.++++|++|++++|.+++..+..+..+++
T Consensus        77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  156 (251)
T 3m19_A           77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN  156 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence            77777777888888777777666666777777777777777777665555666666666666666666555555666666


Q ss_pred             CCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCC
Q 002896          229 LSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS  265 (869)
Q Consensus       229 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  265 (869)
                      |++|++++|++++..+..+..+++|++|++++|.+..
T Consensus       157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            6666666666665555555666666666666665553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=1.7e-24  Score=239.17  Aligned_cols=236  Identities=21%  Similarity=0.281  Sum_probs=175.4

Q ss_pred             CCCCCCEEECcCCcCccccC----ccccCCCCCCEEeCCCC---cccccCCcCc-------CCCCCCcEEEccCCCCCC-
Q 002896          488 NLTNLIRLRLNRNHLTCNIS----ESFGIHPKLTFIDLSHN---NFYGQISSDW-------GKCPNLGTFDVSVNNIIG-  552 (869)
Q Consensus       488 ~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~ls~n---~l~~~~~~~~-------~~~~~L~~L~ls~n~l~~-  552 (869)
                      .+++|++|++++|.++...+    ..+..+++|++|++++|   ++++.+|..+       ..+++|++|++++|.+.+ 
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            34444455555554443322    22445566666666664   3344444333       577888888888888876 


Q ss_pred             ---CCCcCcCCCCCCCEEEccCCcccccCCccc----ccC---------cccceeeccCcccc-ccCc---ccccCCccc
Q 002896          553 ---SLPPEIGDSSQLHVIDLSANHIIGKIPSEI----GKL---------SSLIKLILRRNQLF-GQLP---SELGSLIQL  612 (869)
Q Consensus       553 ---~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l----~~l---------~~L~~L~L~~n~l~-~~~~---~~~~~l~~L  612 (869)
                         .+|..+..+++|++|+|++|.+++..+..+    ..+         ++|++|++++|.+. +..+   ..+..+++|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence               356677788889999999988865433333    333         89999999999887 3444   466788899


Q ss_pred             cccccccccccc-----cccccccCCCCCCeeeCcCCcCC----cccchhhhcccccccccccccccCCc----hhhhhc
Q 002896          613 EYLDLSSNRLSN-----SIPRSLGNLVKLHYLNLSTNQFI----QEIPIKLEKLIHLSELDLSHNFLGKE----IPSQIC  679 (869)
Q Consensus       613 ~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~  679 (869)
                      ++|++++|+++.     ..|..+..+++|+.|+|++|.++    +.+|..+..+++|++|+|++|.+++.    +|..+.
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  269 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS  269 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence            999999999873     44558889999999999999986    67888899999999999999999877    567774


Q ss_pred             C--CCCCcEEeCCCCCCCC----Ccchhh-hcCCCCcEEEccCCcccccCC
Q 002896          680 N--MRSLEMLNLSHNNLSD----FIPRCF-EEMNGLLYIDISYNELHGPIP  723 (869)
Q Consensus       680 ~--l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~g~~p  723 (869)
                      .  +++|+.|+|++|.+++    .+|..+ .++++|++|++++|++++..|
T Consensus       270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            4  9999999999999998    477777 678999999999999987553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=8.6e-22  Score=207.45  Aligned_cols=201  Identities=24%  Similarity=0.268  Sum_probs=107.2

Q ss_pred             CCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCc
Q 002896          103 IGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLN  182 (869)
Q Consensus       103 l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  182 (869)
                      +.++++++.++++++.++ .+|..+.  +++++|+|++|.+.+..|..|.++++|++|++++|.+++..+  .+.+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence            556677777777777776 4555443  567777777777776666667777777777777777664322  15556666


Q ss_pred             eeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCC
Q 002896          183 ELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS  262 (869)
Q Consensus       183 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  262 (869)
                      +|++++|+++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            6666666555 334444555555555555555554444444455555555555555444433344444444444444444


Q ss_pred             CCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeeccccc
Q 002896          263 FSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNS  310 (869)
Q Consensus       263 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~  310 (869)
                      +++..+..+..+++|++|++++|+++ .+|..+...++|+.+++++|.
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence            44333333344444444444444443 233333333334444443333

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=3.8e-23  Score=220.75  Aligned_cols=202  Identities=17%  Similarity=0.175  Sum_probs=143.8

Q ss_pred             CCCCEEeCCCCcccccCCcCc--CCCCCCcEEEccCCCCCCCCC----cCcCCCCCCCEEEccCCcccccCCcccccCcc
Q 002896          514 PKLTFIDLSHNNFYGQISSDW--GKCPNLGTFDVSVNNIIGSLP----PEIGDSSQLHVIDLSANHIIGKIPSEIGKLSS  587 (869)
Q Consensus       514 ~~L~~L~ls~n~l~~~~~~~~--~~~~~L~~L~ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  587 (869)
                      ++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|++.+..|..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            446666666666666666655  666667777777777665444    23345667777777777777666667777777


Q ss_pred             cceeeccCcccccc---C-cccccCCcccccccccccccccccc--c-cccCCCCCCeeeCcCCcCCcccchhhhcc---
Q 002896          588 LIKLILRRNQLFGQ---L-PSELGSLIQLEYLDLSSNRLSNSIP--R-SLGNLVKLHYLNLSTNQFIQEIPIKLEKL---  657 (869)
Q Consensus       588 L~~L~L~~n~l~~~---~-~~~~~~l~~L~~L~Ls~n~l~~~~~--~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l---  657 (869)
                      |++|++++|++.+.   . +..+..+++|++|++++|+++...+  . .++.+++|++|||++|++.+.+|..+..+   
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            77777777776542   1 2234577888888888888863211  1 25677888888888888888877777766   


Q ss_pred             cccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccc
Q 002896          658 IHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHG  720 (869)
Q Consensus       658 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  720 (869)
                      ++|++|+|++|+++ .+|..+.  ++|++|||++|++++. |. +..+++|+.|++++|+++.
T Consensus       251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            58888888888887 5666654  7899999999999885 32 6777889999999998864

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=6.2e-25  Score=238.01  Aligned_cols=211  Identities=17%  Similarity=0.200  Sum_probs=144.4

Q ss_pred             CCCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCC--CCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCC
Q 002896           69 SPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNI--SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGR  146 (869)
Q Consensus        69 ~~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~  146 (869)
                      -|..|.++.|+ ...++.+++++.. +.   +..+.++  +++++|++++|.+.+..+. +.++++|++|++++|.+.+.
T Consensus        35 vc~~W~~~~~~-~~~~~~l~l~~~~-~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~  108 (336)
T 2ast_B           35 VCKRWYRLASD-ESLWQTLDLTGKN-LH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS  108 (336)
T ss_dssp             SCHHHHHHHTC-STTSSEEECTTCB-CC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred             HHHHHHHHhcC-chhheeecccccc-CC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence            45679998886 3346778888765 44   3445566  7889999999988876655 56788999999999888765


Q ss_pred             -CCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCc-ccCCC-CCCccccccccceeecccc-CCCCC-CCc
Q 002896          147 -IPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSN-FLKGS-IPPSLGNLTNLAILYLHNN-SLSGS-IPS  221 (869)
Q Consensus       147 -~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~-~~~  221 (869)
                       +|..+.++++|++|++++|.+++..|..++++++|++|++++| .+++. ++..+.++++|++|++++| .+++. ++.
T Consensus       109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  188 (336)
T 2ast_B          109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV  188 (336)
T ss_dssp             HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred             HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence             7777888888888888888888777777888888888888888 55542 4445666777777777777 66543 344


Q ss_pred             cccCCC-CCCEEEccCC--cCC-CCcccccCCCCCCCEEEccCCC-CCCCCCCCCCCCccCCccccCcc
Q 002896          222 EIGNLK-SLSSLALGNN--KLC-GSIPLFLGNLTNLDTLYLRNNS-FSSSIPSEIGNLKSLSILELGEN  285 (869)
Q Consensus       222 ~l~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n  285 (869)
                      .+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus       189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            456666 6777777766  333 3344455556666666666665 44444444455555555555555

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=3e-22  Score=205.18  Aligned_cols=197  Identities=15%  Similarity=0.155  Sum_probs=148.9

Q ss_pred             CCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCC-CCCCCCcCcCCCCCCCEEEccC-CcccccCCcccccCcccceee
Q 002896          515 KLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN-IIGSLPPEIGDSSQLHVIDLSA-NHIIGKIPSEIGKLSSLIKLI  592 (869)
Q Consensus       515 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~  592 (869)
                      ++++|++++|++++..+..|..+++|++|++++|+ +++..+..+..+++|++|++++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            67777777777776666677777777777777776 6555555677777788888877 777766666777788888888


Q ss_pred             ccCccccccCcccccCCcccc---ccccccc-cccccccccccCCCCCC-eeeCcCCcCCcccchhhhcccccccccccc
Q 002896          593 LRRNQLFGQLPSELGSLIQLE---YLDLSSN-RLSNSIPRSLGNLVKLH-YLNLSTNQFIQEIPIKLEKLIHLSELDLSH  667 (869)
Q Consensus       593 L~~n~l~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  667 (869)
                      +++|++.+ +|. +..+++|+   +|++++| .+++..+..|.++++|+ .|++++|+++...+..+.. ++|+.|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            88888776 444 66777777   8888888 88877777788888898 9999998887433333444 7899999999


Q ss_pred             cc-cCCchhhhhcCC-CCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCc
Q 002896          668 NF-LGKEIPSQICNM-RSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNE  717 (869)
Q Consensus       668 N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  717 (869)
                      |+ +++..+..|..+ ++|+.|++++|++++..+.   .+++|+.|+++++.
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            95 877777888888 8999999999999876554   45678888888763

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=6.8e-24  Score=231.86  Aligned_cols=255  Identities=22%  Similarity=0.203  Sum_probs=128.4

Q ss_pred             eEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCC-----CcCCCC-CCCEEECcCCcCccccCccccCC-----CC
Q 002896          447 LLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-----NLRNLT-NLIRLRLNRNHLTCNISESFGIH-----PK  515 (869)
Q Consensus       447 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~-----~~  515 (869)
                      +..++.|.+++.+|..+....+|++|++++|.+.+..+     .+..++ +|++|++++|.+++..+..+...     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35677777777777666666667777777777665432     344455 56666666666555544444332     55


Q ss_pred             CCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCC-CCCCEEEccCCcccccCCcccc----c-Ccccc
Q 002896          516 LTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEIG----K-LSSLI  589 (869)
Q Consensus       516 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~----~-l~~L~  589 (869)
                      |++|++++|.+++..+..+...                    +..+ ++|++|++++|++++..+..+.    . .++|+
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~--------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~  141 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKT--------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT  141 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHH--------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred             ccEEECcCCcCChHHHHHHHHH--------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence            5555555555554433322111                    1122 3444444444444433332221    1 13455


Q ss_pred             eeeccCccccccCc----ccccCCc-cccccccccccccccccccc----cCC-CCCCeeeCcCCcCCcc----cchhhh
Q 002896          590 KLILRRNQLFGQLP----SELGSLI-QLEYLDLSSNRLSNSIPRSL----GNL-VKLHYLNLSTNQFIQE----IPIKLE  655 (869)
Q Consensus       590 ~L~L~~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~----~~l-~~L~~L~Ls~N~l~~~----~p~~l~  655 (869)
                      +|++++|.+.+..+    ..+..++ +|++|+|++|++++..+..+    ..+ ++|+.|||++|++.+.    ++..+.
T Consensus       142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~  221 (362)
T 3goz_A          142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS  221 (362)
T ss_dssp             EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred             EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence            55555554443222    2223333 55555555555554443322    222 3566666666655442    333343


Q ss_pred             c-ccccccccccccccCCchh----hhhcCCCCCcEEeCCCCCCCCCcc-------hhhhcCCCCcEEEccCCccccc
Q 002896          656 K-LIHLSELDLSHNFLGKEIP----SQICNMRSLEMLNLSHNNLSDFIP-------RCFEEMNGLLYIDISYNELHGP  721 (869)
Q Consensus       656 ~-l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~p-------~~l~~l~~L~~L~ls~N~l~g~  721 (869)
                      . .++|++|+|++|.+++..+    ..+..+++|+.|+|++|.+.+..+       ..+..+++|+.||+++|++.+.
T Consensus       222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            3 2356666666666655433    223445566666666665444332       2344556666667777766554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.8e-22  Score=215.54  Aligned_cols=202  Identities=22%  Similarity=0.205  Sum_probs=151.9

Q ss_pred             CCCCEEECcCCcCccccCccc--cCCCCCCEEeCCCCcccccCC----cCcCCCCCCcEEEccCCCCCCCCCcCcCCCCC
Q 002896          490 TNLIRLRLNRNHLTCNISESF--GIHPKLTFIDLSHNNFYGQIS----SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQ  563 (869)
Q Consensus       490 ~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~ls~n~l~~~~~----~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~  563 (869)
                      ++|++|++++|.+++..+..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|++.+..+..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            345555555555555555555  556666666666666665433    23346788888888888888777788888888


Q ss_pred             CCEEEccCCccccc--C--CcccccCcccceeeccCccccccCc--c-cccCCccccccccccccccccccccccCC---
Q 002896          564 LHVIDLSANHIIGK--I--PSEIGKLSSLIKLILRRNQLFGQLP--S-ELGSLIQLEYLDLSSNRLSNSIPRSLGNL---  633 (869)
Q Consensus       564 L~~L~Ls~n~l~~~--~--p~~l~~l~~L~~L~L~~n~l~~~~~--~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---  633 (869)
                      |++|++++|++.+.  +  +..+..+++|++|++++|+++...+  . .+..+++|++|+|++|++++..|..+..+   
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            88888888887642  2  2334678899999999998863322  1 35678999999999999998888777777   


Q ss_pred             CCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCC
Q 002896          634 VKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD  696 (869)
Q Consensus       634 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  696 (869)
                      ++|++|+|++|+++ .+|..+.  ++|++|+|++|++++. |. +..+++|+.|+|++|+++.
T Consensus       251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            69999999999998 5676664  7999999999999875 33 6788999999999999976

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=3.5e-23  Score=224.18  Aligned_cols=249  Identities=14%  Similarity=0.169  Sum_probs=154.4

Q ss_pred             CCeEEccCCCCcccCCccccCC--CCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccc-cCccccCCCCCCEEeC
Q 002896          445 MTLLALYDNALSGVIPEELGNL--VKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCN-ISESFGIHPKLTFIDL  521 (869)
Q Consensus       445 L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l  521 (869)
                      ++.++++++.+.   +..+..+  ++++.|++++|.+.+..+.+..+++|++|++++|.+++. .+..+..+        
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~--------  117 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC--------  117 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTB--------
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhC--------
Confidence            555666665554   2334444  556666666666555544444455555555555554433 33344444        


Q ss_pred             CCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCC-cccc-cCCcccccCcccceeeccCc-cc
Q 002896          522 SHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSAN-HIIG-KIPSEIGKLSSLIKLILRRN-QL  598 (869)
Q Consensus       522 s~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~-~~p~~l~~l~~L~~L~L~~n-~l  598 (869)
                                      ++|++|++++|.+++..+..+..+++|++|++++| .+++ .++..+.++++|++|++++| .+
T Consensus       118 ----------------~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l  181 (336)
T 2ast_B          118 ----------------SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF  181 (336)
T ss_dssp             ----------------CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred             ----------------CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence                            44444444444444444444555555666666665 4443 24444556666666666666 65


Q ss_pred             ccc-CcccccCCc-cccccccccc--ccc-ccccccccCCCCCCeeeCcCCc-CCcccchhhhcccccccccccccc-cC
Q 002896          599 FGQ-LPSELGSLI-QLEYLDLSSN--RLS-NSIPRSLGNLVKLHYLNLSTNQ-FIQEIPIKLEKLIHLSELDLSHNF-LG  671 (869)
Q Consensus       599 ~~~-~~~~~~~l~-~L~~L~Ls~n--~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~  671 (869)
                      ++. ++..+..++ +|++|++++|  .++ +.+|..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.
T Consensus       182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  261 (336)
T 2ast_B          182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII  261 (336)
T ss_dssp             CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence            543 455566677 7777777777  444 4556677788888888888888 677777788888888888888884 33


Q ss_pred             CchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcC-CCCcEEEccCCcccccCCC
Q 002896          672 KEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEM-NGLLYIDISYNELHGPIPN  724 (869)
Q Consensus       672 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~~p~  724 (869)
                      ......++.+++|+.|++++| ++..   .+..+ ..+..|++++|++++..|.
T Consensus       262 ~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          262 PETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             GGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             HHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence            333346788999999999998 4443   33333 2366667899999998874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=2e-23  Score=228.10  Aligned_cols=261  Identities=21%  Similarity=0.204  Sum_probs=177.4

Q ss_pred             ccccCCCcCcccccccccCCCCCCeEEccCCCCcccCC----ccccCCC-CCcEEecCCCcCcCCCC-CcCC-----CCC
Q 002896          423 ELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIP----EELGNLV-KLTMLTLSDNQLQGSIP-NLRN-----LTN  491 (869)
Q Consensus       423 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~-~l~~-----l~~  491 (869)
                      .++++.|.+++.+|..+...++|+.|++++|.+++..+    ..+..++ +|++|++++|.+.+..+ .+..     .++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46788999999999888888889999999999998877    7788888 99999999999987654 3333     289


Q ss_pred             CCEEECcCCcCccccCcccc----CC-CCCCEEeCCCCcccccCCcCc----CC-CCCCcEEEccCCCCCCCCCcCcCCC
Q 002896          492 LIRLRLNRNHLTCNISESFG----IH-PKLTFIDLSHNNFYGQISSDW----GK-CPNLGTFDVSVNNIIGSLPPEIGDS  561 (869)
Q Consensus       492 L~~L~l~~n~l~~~~~~~~~----~~-~~L~~L~ls~n~l~~~~~~~~----~~-~~~L~~L~ls~n~l~~~~p~~l~~l  561 (869)
                      |++|++++|.+++..+..+.    .. ++|++|++++|.+++..+..+    .. +++|++|++++|.+++..+..    
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~----  157 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE----  157 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH----
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH----
Confidence            99999999999877666443    33 788888888888876544332    22 235555555555554322111    


Q ss_pred             CCCCEEEccCCcccccCCcccccCc-ccceeeccCccccccCcccc----cCC-cccccccccccccccc----cccccc
Q 002896          562 SQLHVIDLSANHIIGKIPSEIGKLS-SLIKLILRRNQLFGQLPSEL----GSL-IQLEYLDLSSNRLSNS----IPRSLG  631 (869)
Q Consensus       562 ~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~Ls~n~l~~~----~~~~~~  631 (869)
                                      ++..+..++ +|++|++++|++.+..+..+    ..+ ++|++|+|++|.+++.    ++..+.
T Consensus       158 ----------------l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~  221 (362)
T 3goz_A          158 ----------------LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS  221 (362)
T ss_dssp             ----------------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred             ----------------HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence                            112222333 55555555555554444322    233 4677777777776652    344454


Q ss_pred             C-CCCCCeeeCcCCcCCcccchh----hhcccccccccccccccCCch-------hhhhcCCCCCcEEeCCCCCCCCCcc
Q 002896          632 N-LVKLHYLNLSTNQFIQEIPIK----LEKLIHLSELDLSHNFLGKEI-------PSQICNMRSLEMLNLSHNNLSDFIP  699 (869)
Q Consensus       632 ~-l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~~~-------p~~l~~l~~L~~L~Ls~N~l~~~~p  699 (869)
                      . .++|+.|||++|++.+..+..    +..+++|++|+|++|.+.+..       +..+..+++|+.||+++|++.+..+
T Consensus       222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            4 357888888888887665533    356678888888888854443       3466778889999999999888755


Q ss_pred             hhhh
Q 002896          700 RCFE  703 (869)
Q Consensus       700 ~~l~  703 (869)
                      ..+.
T Consensus       302 ~~~~  305 (362)
T 3goz_A          302 IPIS  305 (362)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=2.2e-23  Score=230.17  Aligned_cols=138  Identities=22%  Similarity=0.235  Sum_probs=110.1

Q ss_pred             CCCCEEEccCCccc-ccCC---cccccCcccceeeccCcccc--c---cCcccccCCcccccccccccccc----ccccc
Q 002896          562 SQLHVIDLSANHII-GKIP---SEIGKLSSLIKLILRRNQLF--G---QLPSELGSLIQLEYLDLSSNRLS----NSIPR  628 (869)
Q Consensus       562 ~~L~~L~Ls~n~l~-~~~p---~~l~~l~~L~~L~L~~n~l~--~---~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~  628 (869)
                      ++|++|++++|+++ +.++   ..+..+++|++|++++|.+.  +   ..+..+..+++|++|+|++|.++    +.+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            67777777777776 3333   35667778888888888776  2   34446778889999999999986    56788


Q ss_pred             cccCCCCCCeeeCcCCcCCcc----cchhhhc--ccccccccccccccCC----chhhhh-cCCCCCcEEeCCCCCCCCC
Q 002896          629 SLGNLVKLHYLNLSTNQFIQE----IPIKLEK--LIHLSELDLSHNFLGK----EIPSQI-CNMRSLEMLNLSHNNLSDF  697 (869)
Q Consensus       629 ~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~--l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~~~  697 (869)
                      .+..+++|+.|+|++|++++.    ++..+..  +++|+.|+|++|.+++    .+|..+ .++++|++|++++|++++.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            889999999999999999876    5666644  8999999999999988    488777 6789999999999999988


Q ss_pred             cc
Q 002896          698 IP  699 (869)
Q Consensus       698 ~p  699 (869)
                      .+
T Consensus       319 ~~  320 (386)
T 2ca6_A          319 DD  320 (386)
T ss_dssp             SH
T ss_pred             hh
Confidence            74

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=2.7e-21  Score=205.86  Aligned_cols=191  Identities=24%  Similarity=0.348  Sum_probs=128.2

Q ss_pred             CCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeec
Q 002896          514 PKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLIL  593 (869)
Q Consensus       514 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  593 (869)
                      ++|++|++++|.++.. + .+..+++|++|++++|.+.+..+  +..+++|++|++++|++.+.  ..+..+++|+.|++
T Consensus        41 ~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence            3444455554444432 2 34455555555555555554322  55566666666666665542  24666666666666


Q ss_pred             cCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCc
Q 002896          594 RRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKE  673 (869)
Q Consensus       594 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  673 (869)
                      ++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++|+.|++++|++++.
T Consensus       115 ~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          115 TSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             TTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence            6666655422  6677777777777777775543  7777888888888888776544  77888888888888888766


Q ss_pred             hhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccc
Q 002896          674 IPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHG  720 (869)
Q Consensus       674 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  720 (869)
                      .+  +..+++|++|++++|++++..|  +..+++|+.|++++|++++
T Consensus       189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            54  7788888888888888887653  7788888888888888876

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=2.2e-21  Score=198.77  Aligned_cols=196  Identities=16%  Similarity=0.135  Sum_probs=126.7

Q ss_pred             CCCEEECcCCcCccccCccccCCCCCCEEeCCCCc-ccccCCcCcCCCCCCcEEEccC-CCCCCCCCcCcCCCCCCCEEE
Q 002896          491 NLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNN-FYGQISSDWGKCPNLGTFDVSV-NNIIGSLPPEIGDSSQLHVID  568 (869)
Q Consensus       491 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~~~L~~L~ls~-n~l~~~~p~~l~~l~~L~~L~  568 (869)
                      ++++|++++|.+++..+..|..+++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            45555555555555555555566666666666664 5555555566666666666665 666655555566666666666


Q ss_pred             ccCCcccccCCcccccCcccc---eeeccCc-cccccCcccccCCcccc-ccccccccccccccccccCCCCCCeeeCcC
Q 002896          569 LSANHIIGKIPSEIGKLSSLI---KLILRRN-QLFGQLPSELGSLIQLE-YLDLSSNRLSNSIPRSLGNLVKLHYLNLST  643 (869)
Q Consensus       569 Ls~n~l~~~~p~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  643 (869)
                      +++|++++ +|. +..+++|+   .|++++| .+.+..+..|..+++|+ +|++++|+++...+..|.. ++|+.|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            66666664 444 55666665   7777777 66666666677777777 7777777777433334444 6777778877


Q ss_pred             Cc-CCcccchhhhcc-cccccccccccccCCchhhhhcCCCCCcEEeCCCC
Q 002896          644 NQ-FIQEIPIKLEKL-IHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHN  692 (869)
Q Consensus       644 N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  692 (869)
                      |+ +++..+..|..+ ++|+.|++++|++++..+.   .+++|+.|+++++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            74 766666667777 7788888888887654333   5677888888765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=9.3e-21  Score=189.54  Aligned_cols=182  Identities=26%  Similarity=0.285  Sum_probs=118.8

Q ss_pred             CCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCc
Q 002896           70 PCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPP  149 (869)
Q Consensus        70 ~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~  149 (869)
                      .|.|.+|.|+..+            +. .+|..+  .++|++|++++|.+++..+..++.+++|++|++++|.+.+..+.
T Consensus         6 ~C~~~~v~c~~~~------------l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~   70 (208)
T 2o6s_A            6 SCSGTTVECYSQG------------RT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG   70 (208)
T ss_dssp             EEETTEEECCSSC------------CS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred             EECCCEEEecCCC------------cc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh
Confidence            4899999996432            11 233333  35788999999988876666788888888888888888866556


Q ss_pred             ccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCC
Q 002896          150 QIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSL  229 (869)
Q Consensus       150 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  229 (869)
                      .|+++++|++|++++|.+++..+..++++++|++|++++|++++..+..+.++++|++|++++|.+++..+..+..+++|
T Consensus        71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  150 (208)
T 2o6s_A           71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL  150 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence            67788888888888888876555556777777777777777766555556666666666666666665444445555555


Q ss_pred             CEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCC
Q 002896          230 SSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGN  273 (869)
Q Consensus       230 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  273 (869)
                      ++|++++|.+.+       .+++|++|+++.|+++|.+|..++.
T Consensus       151 ~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          151 QYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             CEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred             cEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcc
Confidence            555555554432       2334444444444444444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=1.4e-20  Score=200.40  Aligned_cols=193  Identities=29%  Similarity=0.444  Sum_probs=118.6

Q ss_pred             CCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCce
Q 002896          104 GNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNE  183 (869)
Q Consensus       104 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  183 (869)
                      .++++|++|++++|.++. +| .+..+++|++|++++|.+.+ ++. +.++++|++|++++|.+++.  ..+.++++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~  111 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (308)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence            346677777777777763 44 56777777777777777764 333 77777777777777777642  25667777777


Q ss_pred             eeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCC
Q 002896          184 LALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF  263 (869)
Q Consensus       184 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  263 (869)
                      |++++|++++..  .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+
T Consensus       112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence            777777766532  26666666666666666664322  5566666666666666654322  55666666666666666


Q ss_pred             CCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeeccccccc
Q 002896          264 SSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLS  312 (869)
Q Consensus       264 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~  312 (869)
                      ++..+  +..+++|++|++++|++.+..+  +..+++|++|++++|.++
T Consensus       186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred             CcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence            54322  4555555555555555553332  455555555555555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=1.1e-20  Score=190.22  Aligned_cols=158  Identities=18%  Similarity=0.211  Sum_probs=127.6

Q ss_pred             EEEccCCcccccCCcccccCcccceeeccCccccccCc-ccccCCccccccccccccccccccccccCCCCCCeeeCcCC
Q 002896          566 VIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLP-SELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN  644 (869)
Q Consensus       566 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  644 (869)
                      .+++++|.++. +|..+.  +.++.|++++|.+.+..+ ..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus        15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            45555555442 343332  234566666666655543 34667888888888888888777778899999999999999


Q ss_pred             cCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCC
Q 002896          645 QFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPN  724 (869)
Q Consensus       645 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~  724 (869)
                      ++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|++|++++|+++|.|+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            99888888899999999999999999999899999999999999999999999999999999999999999999999885


Q ss_pred             Cc
Q 002896          725 ST  726 (869)
Q Consensus       725 ~~  726 (869)
                      .+
T Consensus       172 ~~  173 (220)
T 2v70_A          172 AW  173 (220)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=1.7e-20  Score=213.98  Aligned_cols=208  Identities=24%  Similarity=0.377  Sum_probs=121.5

Q ss_pred             CCCCCCCCCCCCCCC-----ccCce-eeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCC
Q 002896           57 LPSWTLNNATKISPC-----AWFGI-HCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNL  130 (869)
Q Consensus        57 l~~W~~~~~~~~~~c-----~w~gv-~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l  130 (869)
                      +.+|.    .+.++|     .|.|+ .|. .++++.+++++.. +.+ +|..+.  ++|++|+|++|.++ .+|   ..+
T Consensus        33 l~~W~----~~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~-L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l   99 (571)
T 3cvr_A           33 WDKWE----KQALPGENRNEAVSLLKECL-INQFSELQLNRLN-LSS-LPDNLP--PQITVLEITQNALI-SLP---ELP   99 (571)
T ss_dssp             HHHHH----TTCCTTCCHHHHHHHHHHHH-HTTCSEEECCSSC-CSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCC
T ss_pred             HHHHh----ccCCccccccchhhhccccc-cCCccEEEeCCCC-CCc-cCHhHc--CCCCEEECcCCCCc-ccc---ccc
Confidence            34565    344567     79998 775 3456777777665 655 555443  66777777777766 455   345


Q ss_pred             CcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeec
Q 002896          131 SMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL  210 (869)
Q Consensus       131 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  210 (869)
                      ++|++|+|++|.+++ +|. +.+  +|++|++++|.+++ +|.   .+++|++|++++|.+++ +|.   .++       
T Consensus       100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~-------  160 (571)
T 3cvr_A          100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPT-------  160 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCT-------
T ss_pred             CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCC-------
Confidence            666666666666664 555 443  66666666666654 443   45555555555555554 222   234       


Q ss_pred             cccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccC-------CccccC
Q 002896          211 HNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSL-------SILELG  283 (869)
Q Consensus       211 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------~~L~L~  283 (869)
                                       +|++|++++|.+++ +|. +.  ++|++|++++|.++ .+|. +..  +|       +.|+++
T Consensus       161 -----------------~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls  215 (571)
T 3cvr_A          161 -----------------SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCR  215 (571)
T ss_dssp             -----------------TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECC
T ss_pred             -----------------CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecC
Confidence                             44555555555443 333 33  45555555555554 3333 332  44       777777


Q ss_pred             cccCCcccCccccCCCCCCeeecccccccCCCCCcccCC
Q 002896          284 ENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNL  322 (869)
Q Consensus       284 ~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l  322 (869)
                      +|+++ .+|..+..+++|+.|++++|.+++.+|..+..+
T Consensus       216 ~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             SSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             CCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            77776 466666667777777777777777766665543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=3.9e-20  Score=200.90  Aligned_cols=243  Identities=17%  Similarity=0.118  Sum_probs=167.8

Q ss_pred             CccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCC-c
Q 002896           71 CAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIP-P  149 (869)
Q Consensus        71 c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p-~  149 (869)
                      |.|..|.|+..+            ++ .+|..+  .+++++|+|++|.++...+.+|.++++|++|+|++|.+.+.+| .
T Consensus         9 C~~~~v~C~~~~------------Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~   73 (350)
T 4ay9_X            9 CSNRVFLCQESK------------VT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD   73 (350)
T ss_dssp             EETTEEEEESTT------------CC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred             eeCCEEEecCCC------------CC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence            788888886321            33 455555  3688999999999985555678999999999999999877666 4


Q ss_pred             ccCCCCCCCE-EEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccc-cCCCCCCCccccCCC
Q 002896          150 QIGHLSYIEA-LHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN-NSLSGSIPSEIGNLK  227 (869)
Q Consensus       150 ~l~~l~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~  227 (869)
                      .|.++++|++ +.+..|+++...|..|.++++|++|++++|++.+..+..+....++..|++.+ +.+....+..+..+.
T Consensus        74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~  153 (350)
T 4ay9_X           74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS  153 (350)
T ss_dssp             SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred             HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc
Confidence            6788888775 56667888877778888899999999999988877777777777788888865 455544445565554


Q ss_pred             -CCCEEEccCCcCCCCcccccCCCCCCCEEEccC-CCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeee
Q 002896          228 -SLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRN-NSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLY  305 (869)
Q Consensus       228 -~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~  305 (869)
                       .+++|++++|+++. +|.......+|++|++.+ |.++...+..|..+++|++|++++|+++...+..+   .+|+.|.
T Consensus       154 ~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~  229 (350)
T 4ay9_X          154 FESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLR  229 (350)
T ss_dssp             SSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEE
T ss_pred             hhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhh
Confidence             57778888888874 444444556778888765 44543333456777888888888887774433333   4444444


Q ss_pred             cccccccCCCCCcccCCCCCCeEeccCC
Q 002896          306 LYTNSLSGSIPSEIGNLKSLSGLELADN  333 (869)
Q Consensus       306 L~~n~~~~~~p~~l~~l~~L~~L~Ls~n  333 (869)
                      +.++.--..+| .+..+++|+.+++.++
T Consensus       230 ~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          230 ARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             CTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             hccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            44433333455 3566677777776653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=2.8e-20  Score=187.39  Aligned_cols=158  Identities=20%  Similarity=0.283  Sum_probs=130.3

Q ss_pred             CEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCC
Q 002896          565 HVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN  644 (869)
Q Consensus       565 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  644 (869)
                      +.++++++.++ .+|..+.  ++|+.|++++|.+.+..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            34555555554 3444333  56667777777777666667778888888888888888888888999999999999999


Q ss_pred             cCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCC
Q 002896          645 QFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPN  724 (869)
Q Consensus       645 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~  724 (869)
                      ++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|++++|++.|.|+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            98877777788899999999999999999899999999999999999999999988999999999999999999998874


Q ss_pred             C
Q 002896          725 S  725 (869)
Q Consensus       725 ~  725 (869)
                      .
T Consensus       171 ~  171 (220)
T 2v9t_B          171 K  171 (220)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=2.4e-19  Score=179.29  Aligned_cols=180  Identities=23%  Similarity=0.248  Sum_probs=120.7

Q ss_pred             cEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCc
Q 002896          110 KYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSN  189 (869)
Q Consensus       110 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  189 (869)
                      +.++.+++.++ .+|..+  .++|++|++++|.+.+..+..|+++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            45677777766 455444  357888888888887665666778888888888888877655556677777777777777


Q ss_pred             ccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCC
Q 002896          190 FLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPS  269 (869)
Q Consensus       190 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  269 (869)
                      ++++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+    
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----  162 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----  162 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence            7776666666777777777777777776555556667777777777776665555556666666666666665543    


Q ss_pred             CCCCCccCCccccCcccCCcccCccccCCC
Q 002896          270 EIGNLKSLSILELGENRLNGSIPLSLGNLT  299 (869)
Q Consensus       270 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~  299 (869)
                         .+++|+.|+++.|+++|.+|.+++.++
T Consensus       163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          163 ---TCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             ---CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             ---CCCCHHHHHHHHHhCCceeeccCcccc
Confidence               234566666666666666665555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=1.1e-19  Score=198.19  Aligned_cols=181  Identities=23%  Similarity=0.231  Sum_probs=142.9

Q ss_pred             cEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccc-cCcccceeeccCccccccCcccccCCcccccccccc
Q 002896          541 GTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIG-KLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSS  619 (869)
Q Consensus       541 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  619 (869)
                      +.++++++.++. +|..+.  +.++.|+|++|++++..+..+. ++++|+.|+|++|++.+..+..|..+++|++|+|++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            455566555553 444433  3567777777777776666666 778888888888888777777788888888888888


Q ss_pred             ccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhh---cCCCCCcEEeCCCCCCCC
Q 002896          620 NRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQI---CNMRSLEMLNLSHNNLSD  696 (869)
Q Consensus       620 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~  696 (869)
                      |++++..+..|..+++|+.|+|++|++.+..|..|.++++|+.|+|++|++++..+..|   ..+++|+.|||++|+|++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            88887777788888889999999998888888888888899999999999877666666   678999999999999999


Q ss_pred             CcchhhhcCCC--CcEEEccCCcccccCCC
Q 002896          697 FIPRCFEEMNG--LLYIDISYNELHGPIPN  724 (869)
Q Consensus       697 ~~p~~l~~l~~--L~~L~ls~N~l~g~~p~  724 (869)
                      ..+..+..++.  ++.|++++|++.|.|..
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l  207 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLECDCKL  207 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred             cCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence            88888888887  48899999999998763

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=2.9e-19  Score=203.81  Aligned_cols=186  Identities=24%  Similarity=0.316  Sum_probs=93.4

Q ss_pred             CCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccC
Q 002896          468 KLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSV  547 (869)
Q Consensus       468 ~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~  547 (869)
                      +++.|++++|.+.+..+.+  .++|++|++++|.++. +|   ..+++|++|++++|.+++ +|. +..  +|++|++++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence            6777777777776532223  2556666666666653 22   234556666666666554 333 332  555555555


Q ss_pred             CCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCcccccccccccccccccc
Q 002896          548 NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIP  627 (869)
Q Consensus       548 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  627 (869)
                      |++++ +|.   .+++|++|++++|++++ +|.   .+++|+.|++++|++++                         +|
T Consensus       130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-------------------------lp  176 (571)
T 3cvr_A          130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-------------------------LP  176 (571)
T ss_dssp             SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-------------------------CC
T ss_pred             CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-------------------------cc
Confidence            55554 333   34555555555555543 332   33444555555554444                         33


Q ss_pred             ccccCCCCCCeeeCcCCcCCcccchhhhccccc-------ccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcch
Q 002896          628 RSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL-------SELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPR  700 (869)
Q Consensus       628 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  700 (869)
                      . |.  ++|+.|+|++|+++ .+|. +..  +|       +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|.
T Consensus       177 ~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          177 E-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             C-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             h-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            3 33  44555555555444 2332 322  33       55555555553 3444444455555555555555555555


Q ss_pred             hhhc
Q 002896          701 CFEE  704 (869)
Q Consensus       701 ~l~~  704 (869)
                      .+..
T Consensus       249 ~l~~  252 (571)
T 3cvr_A          249 SLSQ  252 (571)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=1.7e-19  Score=195.77  Aligned_cols=222  Identities=19%  Similarity=0.168  Sum_probs=137.0

Q ss_pred             CCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCC-cCcCCCCCCcE-EEccCCCCCCCCCcCcCCCCCCCEE
Q 002896          490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS-SDWGKCPNLGT-FDVSVNNIIGSLPPEIGDSSQLHVI  567 (869)
Q Consensus       490 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~-L~ls~n~l~~~~p~~l~~l~~L~~L  567 (869)
                      +++++|++++|+++...+..|..+++|++|++++|++.+.++ ..|.+++++.+ +.+.+|+++...|..+..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            455666666666665555566666666666666666654443 34566666554 4445566666666666777777777


Q ss_pred             EccCCcccccCCcccccCcccceeeccC-ccccccCcccccCCc-cccccccccccccccccccccCCCCCCeeeCcCCc
Q 002896          568 DLSANHIIGKIPSEIGKLSSLIKLILRR-NQLFGQLPSELGSLI-QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQ  645 (869)
Q Consensus       568 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  645 (869)
                      ++++|++.+..+..+....++..|++.+ +.+....+..|..+. .++.|++++|+++...+..| ...+|+.|++++|+
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n  188 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNN  188 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCT
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCC
Confidence            7777777655555555566666777755 345555555555554 47777888888775444333 44677788877543


Q ss_pred             CCcccc-hhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCC
Q 002896          646 FIQEIP-IKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYN  716 (869)
Q Consensus       646 l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  716 (869)
                      ..+.+| ..|.++++|++|||++|+|+...+..|   .+|+.|.+.++.--..+| .+..+++|+.++++++
T Consensus       189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             TCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             cccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            334444 456788888888888888865554444   444555544443333445 3677888888888754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=1e-18  Score=177.25  Aligned_cols=161  Identities=25%  Similarity=0.278  Sum_probs=119.8

Q ss_pred             CCCCCCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCC
Q 002896           66 TKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSG  145 (869)
Q Consensus        66 ~~~~~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~  145 (869)
                      .+...|+|++|.|...+             .+.+|..+.  ++|++|+|++|.+++..|..|..+++|++|+|++|.+.+
T Consensus        14 ~~~~~Cs~~~v~c~~~~-------------l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~   78 (229)
T 3e6j_A           14 PSQCSCSGTTVDCRSKR-------------HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA   78 (229)
T ss_dssp             CTTCEEETTEEECTTSC-------------CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCEEeCCEeEccCCC-------------cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC
Confidence            45678999999996321             234454443  788999999999998888888899999999999998875


Q ss_pred             CCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccC
Q 002896          146 RIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGN  225 (869)
Q Consensus       146 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  225 (869)
                      ..+..|.++++|++|+|++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..+..
T Consensus        79 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  157 (229)
T 3e6j_A           79 LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR  157 (229)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence            55566788888888888888888666666777888888888888777 55666677777777777777776555555666


Q ss_pred             CCCCCEEEccCCcCCCC
Q 002896          226 LKSLSSLALGNNKLCGS  242 (869)
Q Consensus       226 l~~L~~L~L~~n~l~~~  242 (869)
                      +++|++|++++|.+...
T Consensus       158 l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          158 LSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CTTCCEEECTTSCBCTT
T ss_pred             CCCCCEEEeeCCCccCC
Confidence            66666666666666543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=4.6e-19  Score=179.75  Aligned_cols=157  Identities=27%  Similarity=0.323  Sum_probs=122.4

Q ss_pred             CEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCC
Q 002896          565 HVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN  644 (869)
Q Consensus       565 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  644 (869)
                      +.++.++++++ .+|..+.  ++|+.|++++|.+.+..|..|..+++|++|+|++|++....+..|..+++|+.|+|++|
T Consensus        22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            34555555544 3343332  56666666666666666666677777777788888777666667788888888888888


Q ss_pred             cCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCC
Q 002896          645 QFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPN  724 (869)
Q Consensus       645 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~  724 (869)
                      ++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|++++|+++|.|+.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence            888777777888888888888888886 6788889999999999999999998888899999999999999999998874


Q ss_pred             C
Q 002896          725 S  725 (869)
Q Consensus       725 ~  725 (869)
                      .
T Consensus       178 ~  178 (229)
T 3e6j_A          178 I  178 (229)
T ss_dssp             G
T ss_pred             h
Confidence            3

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=2e-18  Score=181.84  Aligned_cols=170  Identities=24%  Similarity=0.313  Sum_probs=118.6

Q ss_pred             CCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccc
Q 002896          537 CPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLD  616 (869)
Q Consensus       537 ~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  616 (869)
                      +++|+.|++++|.+... + .+..+++|++|++++|++++..+  +..+++|+.|++++|.+.+.  ..+..+++|++|+
T Consensus        45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEE
T ss_pred             cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEE
Confidence            34445555555544432 2 24555556666666665554332  55566666666666665542  2266777777777


Q ss_pred             cccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCC
Q 002896          617 LSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD  696 (869)
Q Consensus       617 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  696 (869)
                      +++|++++.  ..+..+++|+.|++++|++++.  ..+..+++|++|++++|++++..|  +..+++|+.|++++|++++
T Consensus       119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            777777754  3677788888888888888765  568888888888888888877766  8888899999999998888


Q ss_pred             CcchhhhcCCCCcEEEccCCcccc
Q 002896          697 FIPRCFEEMNGLLYIDISYNELHG  720 (869)
Q Consensus       697 ~~p~~l~~l~~L~~L~ls~N~l~g  720 (869)
                      . | .+..+++|+.|++++|++++
T Consensus       193 l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          193 L-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             C-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             C-h-hhccCCCCCEEECcCCcccC
Confidence            5 3 48888899999999998876

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=3.3e-18  Score=172.13  Aligned_cols=156  Identities=22%  Similarity=0.174  Sum_probs=128.8

Q ss_pred             cEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCC-cccccCcccceeeccCccccccCcccccCCcccccccccc
Q 002896          541 GTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIP-SEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSS  619 (869)
Q Consensus       541 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  619 (869)
                      +.+++++|.++. +|..+.  +.+++|++++|++++..| ..+..+++|+.|++++|.+.+..+..|..+++|++|+|++
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            456666666653 454443  356788888888877654 3477888888888888888888888888899999999999


Q ss_pred             ccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcc
Q 002896          620 NRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP  699 (869)
Q Consensus       620 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  699 (869)
                      |.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            99988888889999999999999999998888889999999999999999998889999999999999999999987644

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=2.1e-18  Score=199.20  Aligned_cols=189  Identities=30%  Similarity=0.388  Sum_probs=107.8

Q ss_pred             CcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccC
Q 002896          109 LKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTS  188 (869)
Q Consensus       109 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  188 (869)
                      +..+++..+.+.+..+  +..+++|++|++++|.+. .+| .++.+++|++|+|++|.+++..|  +.++++|++|+|++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            4444555555543322  345666677777776665 233 46666777777777776664433  66666666666666


Q ss_pred             cccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCC
Q 002896          189 NFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIP  268 (869)
Q Consensus       189 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  268 (869)
                      |.+.+.  +.+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..|
T Consensus        97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A           97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             SCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             CCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence            666542  2456666666666666666542  3355666666666666666543  345555666666666666554433


Q ss_pred             CCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccC
Q 002896          269 SEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG  313 (869)
Q Consensus       269 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~  313 (869)
                        +..+++|+.|+|++|++.+.  ..+..+++|+.|+|++|.+.+
T Consensus       171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence              55555555555555555532  235555555555555555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=2.9e-18  Score=180.67  Aligned_cols=149  Identities=26%  Similarity=0.428  Sum_probs=82.8

Q ss_pred             CCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCce
Q 002896          104 GNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNE  183 (869)
Q Consensus       104 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  183 (869)
                      ..+++|++|++++|.+... + .+..+++|++|++++|.+.+..|  ++++++|++|++++|.+++ + +.++++++|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred             hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence            3456667777777666532 2 36666666777777666664333  6666666666666666654 2 23566666666


Q ss_pred             eeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCC
Q 002896          184 LALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF  263 (869)
Q Consensus       184 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  263 (869)
                      |++++|++++.  +.+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|++|++++|.+
T Consensus       117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence            66666665542  3455555555555555555533  334455555555555555543332  44444555555554444


Q ss_pred             C
Q 002896          264 S  264 (869)
Q Consensus       264 ~  264 (869)
                      +
T Consensus       191 ~  191 (291)
T 1h6t_A          191 S  191 (291)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.74  E-value=1.3e-19  Score=214.83  Aligned_cols=219  Identities=23%  Similarity=0.232  Sum_probs=82.9

Q ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEe
Q 002896           34 STEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLD  113 (869)
Q Consensus        34 ~~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~  113 (869)
                      ...++++|+++........ ...-..|.   ...+..+.|.++.+.. .+++.++|.+.. +.. .+..     .|+.++
T Consensus       130 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~s~-~~~~~l~L~~n~-~~~-~~~~-----~l~~l~  197 (727)
T 4b8c_D          130 VDCTKQALMEMADTLTDSK-TAKKQQPT---GDSTPSGTATNSAVST-PLTPKIELFANG-KDE-ANQA-----LLQHKK  197 (727)
T ss_dssp             --CCCHHHHHHHHHHHHHH-TTC---------------------------------------------------------
T ss_pred             cccchhhhhhhhhhccccc-CcccCCCc---CCCCccccCCCceecC-CccceEEeeCCC-CCc-chhh-----HhhcCc
Confidence            4567889999987763311 22234564   2344567898888863 678888887765 444 2332     234444


Q ss_pred             CCCCCCCC---------CCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCcee
Q 002896          114 LSSNSFSG---------TIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNEL  184 (869)
Q Consensus       114 Ls~n~~~~---------~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  184 (869)
                      |+.+.+.+         ..|+.+..+++|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|+++++|++|
T Consensus       198 Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L  275 (727)
T 4b8c_D          198 LSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVL  275 (727)
T ss_dssp             ------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEE
T ss_pred             cCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEE
Confidence            54444432         23445555555555555555555 45555555555555555555555 455555555555555


Q ss_pred             eccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCC-CCEEEccCCCC
Q 002896          185 ALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTN-LDTLYLRNNSF  263 (869)
Q Consensus       185 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l  263 (869)
                      +|++|+++ .+|..++++++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+..+.. +..+++++|.+
T Consensus       276 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l  353 (727)
T 4b8c_D          276 DLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP  353 (727)
T ss_dssp             ECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             eCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence            55555555 44555555555555555555554 44444555555555555555555554444432211 11234445555


Q ss_pred             CCCCC
Q 002896          264 SSSIP  268 (869)
Q Consensus       264 ~~~~~  268 (869)
                      ++.+|
T Consensus       354 ~~~~p  358 (727)
T 4b8c_D          354 EIPLP  358 (727)
T ss_dssp             CCCCC
T ss_pred             cCcCc
Confidence            44444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=2.1e-17  Score=166.28  Aligned_cols=155  Identities=23%  Similarity=0.308  Sum_probs=102.2

Q ss_pred             CccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcc
Q 002896           71 CAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQ  150 (869)
Q Consensus        71 c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~  150 (869)
                      |.|..|.|...           + +. .+|..+.  ++|+.|+|++|.+++..+..|..+++|++|+|++|.+.+..|..
T Consensus        11 C~~~~v~c~~~-----------~-l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~   75 (220)
T 2v9t_B           11 CSNNIVDCRGK-----------G-LT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA   75 (220)
T ss_dssp             EETTEEECTTS-----------C-CS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT
T ss_pred             ECCCEEEcCCC-----------C-cC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH
Confidence            67777777532           1 22 3454443  57888888888887666667788888888888888877777777


Q ss_pred             cCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCC
Q 002896          151 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLS  230 (869)
Q Consensus       151 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  230 (869)
                      |.++++|++|+|++|.++...+..|.++++|++|+|++|++++..|..|..+++|++|+|++|.+++..+..+..+++|+
T Consensus        76 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  155 (220)
T 2v9t_B           76 FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ  155 (220)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC
Confidence            77777777777777777754444566666666666666666666666666666666666666666555544555555555


Q ss_pred             EEEccCCcCC
Q 002896          231 SLALGNNKLC  240 (869)
Q Consensus       231 ~L~L~~n~l~  240 (869)
                      +|++++|.+.
T Consensus       156 ~L~L~~N~~~  165 (220)
T 2v9t_B          156 TMHLAQNPFI  165 (220)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEeCCCCcC
Confidence            5555555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.74  E-value=2.2e-18  Score=169.50  Aligned_cols=135  Identities=25%  Similarity=0.309  Sum_probs=101.0

Q ss_pred             cccccccccccccccccc-cccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeC
Q 002896          611 QLEYLDLSSNRLSNSIPR-SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL  689 (869)
Q Consensus       611 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  689 (869)
                      +|++|++++|.+++..+. .|+.+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|+|
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            666777777777665553 4777788888888888888777788888888888888888888877777888888888888


Q ss_pred             CCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCccccccchhhhcCCCCCCCC
Q 002896          690 SHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGD  745 (869)
Q Consensus       690 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~  745 (869)
                      ++|++++.+|..|..+++|++|++++|+++|.|+..+.........+.++...|+.
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~  165 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCS
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCC
Confidence            88888888888888888889999999999888875432222222234455556654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=5.9e-18  Score=195.39  Aligned_cols=204  Identities=27%  Similarity=0.377  Sum_probs=163.4

Q ss_pred             CCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCcccccccccee
Q 002896          129 NLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAIL  208 (869)
Q Consensus       129 ~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  208 (869)
                      .+..+..+.++.+.+.+.++  +..+.+|+.|++++|.+.. +| .+..+++|++|+|++|.+.+..+  +..+++|+.|
T Consensus        19 ~l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L   92 (605)
T 1m9s_A           19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL   92 (605)
T ss_dssp             HHHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred             HHHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence            34567778888887775443  5678999999999999874 34 68899999999999999987655  8899999999


Q ss_pred             eccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCC
Q 002896          209 YLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN  288 (869)
Q Consensus       209 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~  288 (869)
                      +|++|.+.+. | .+..+++|++|++++|.+++.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++.
T Consensus        93 ~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A           93 FLDENKIKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             ECCSSCCCCC-T-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred             ECcCCCCCCC-h-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence            9999998853 3 688899999999999998863  4578889999999999998865  56888889999999999888


Q ss_pred             cccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccc
Q 002896          289 GSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTN  348 (869)
Q Consensus       289 ~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  348 (869)
                      +..|  +..+++|+.|+|++|.+++. | .+..+++|+.|+|++|.+.+.....+..+..
T Consensus       167 ~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~  222 (605)
T 1m9s_A          167 DIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKPINHQSNLVV  222 (605)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECCCCCCCSSCEE
T ss_pred             Cchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCCcccccccEEe
Confidence            7655  88888999999999988764 3 5788888889998888887654444444333

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=8.3e-18  Score=166.29  Aligned_cols=155  Identities=19%  Similarity=0.241  Sum_probs=114.5

Q ss_pred             CCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCe
Q 002896          559 GDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHY  638 (869)
Q Consensus       559 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  638 (869)
                      ..+++|++|++++|.+. .+| .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            34455666666666665 334 4666666667777666443  2335667788888888888888777788888888888


Q ss_pred             eeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcc
Q 002896          639 LNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL  718 (869)
Q Consensus       639 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  718 (869)
                      |++++|++++..|..+..+++|++|++++|...+.+| .+..+++|+.|++++|++++..  .+..+++|++|++++|++
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence            8888888888888888888888999999888334455 6888999999999999998853  788889999999999987


Q ss_pred             cc
Q 002896          719 HG  720 (869)
Q Consensus       719 ~g  720 (869)
                      .+
T Consensus       194 ~~  195 (197)
T 4ezg_A          194 GG  195 (197)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=8.2e-18  Score=183.28  Aligned_cols=157  Identities=26%  Similarity=0.173  Sum_probs=86.9

Q ss_pred             CcEEEccCCCCCCCCCcCcC-CCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccc
Q 002896          540 LGTFDVSVNNIIGSLPPEIG-DSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLS  618 (869)
Q Consensus       540 L~~L~ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  618 (869)
                      ++.|++++|++++..+..+. .+++|++|+|++|++++..+..|.++++|++|+|++|++.+..+..|..+++|++|+|+
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  120 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY  120 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence            44444444444444444443 45555555555555554444445555555555555555555555555556666666666


Q ss_pred             cccccccccccccCCCCCCeeeCcCCcCCcccchhh---hcccccccccccccccCCchhhhhcCCCC--CcEEeCCCCC
Q 002896          619 SNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL---EKLIHLSELDLSHNFLGKEIPSQICNMRS--LEMLNLSHNN  693 (869)
Q Consensus       619 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N~  693 (869)
                      +|++++..|..|..+++|+.|+|++|++++..+..+   ..+++|+.|+|++|+|++..+..+..++.  |+.|+|++|+
T Consensus       121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence            666665555566666666666666666655444333   44666666666666666555556666655  3666666666


Q ss_pred             CCC
Q 002896          694 LSD  696 (869)
Q Consensus       694 l~~  696 (869)
                      +..
T Consensus       201 ~~C  203 (361)
T 2xot_A          201 LEC  203 (361)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=1.8e-17  Score=163.91  Aligned_cols=154  Identities=21%  Similarity=0.245  Sum_probs=105.7

Q ss_pred             CCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCcccccc
Q 002896          536 KCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYL  615 (869)
Q Consensus       536 ~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  615 (869)
                      .+++|++|++++|.+. .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            3455556666665555 333 4556666666666666543  22356667777777777777776666677777788888


Q ss_pred             ccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCC
Q 002896          616 DLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS  695 (869)
Q Consensus       616 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  695 (869)
                      ++++|.+++..|..+..+++|+.|++++|+..+.+| .+..+++|++|++++|.+++..  .+..+++|+.|++++|++.
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence            888888877777778888888888888887334455 5788888888888888886643  6778888888888888876


Q ss_pred             C
Q 002896          696 D  696 (869)
Q Consensus       696 ~  696 (869)
                      +
T Consensus       195 ~  195 (197)
T 4ezg_A          195 G  195 (197)
T ss_dssp             -
T ss_pred             C
Confidence            4

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=7.8e-18  Score=199.56  Aligned_cols=225  Identities=22%  Similarity=0.245  Sum_probs=124.5

Q ss_pred             CCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEcc
Q 002896          467 VKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVS  546 (869)
Q Consensus       467 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls  546 (869)
                      +.++.|++.+|.+....     ...++.++|+.+.+.              .++++.|.+. ..+..+..++.|+.|+|+
T Consensus       173 ~~~~~l~L~~n~~~~~~-----~~~l~~l~Ls~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls  232 (727)
T 4b8c_D          173 PLTPKIELFANGKDEAN-----QALLQHKKLSQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHALDLS  232 (727)
T ss_dssp             ---------------------------------------------------------------------CCCCCCEEECT
T ss_pred             CccceEEeeCCCCCcch-----hhHhhcCccCccccc--------------Ccccccccee-cChhhhccCCCCcEEECC
Confidence            44666666666655421     122344444444332              2334444444 456677888889999999


Q ss_pred             CCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccc
Q 002896          547 VNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSI  626 (869)
Q Consensus       547 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  626 (869)
                      +|.+. .+|..+..+++|++|+|++|.++ .+|..++++++|+.|+|++|.++ .+|..+..+++|++|+|++|.++ .+
T Consensus       233 ~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~l  308 (727)
T 4b8c_D          233 NLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TL  308 (727)
T ss_dssp             TSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CC
T ss_pred             CCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-cc
Confidence            99887 67777778999999999999998 78888999999999999999998 67888999999999999999997 67


Q ss_pred             cccccCCCCCCeeeCcCCcCCcccchhhhcccc-cccccccccccCCchhhhhcCCCCCcEEeCCCC--------CCCCC
Q 002896          627 PRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIH-LSELDLSHNFLGKEIPSQICNMRSLEMLNLSHN--------NLSDF  697 (869)
Q Consensus       627 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~~  697 (869)
                      |..|+.+++|+.|+|++|++++.+|..+..+.. +..|+|++|.+++.+|.      .|+.|++++|        .+.+.
T Consensus       309 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~  382 (727)
T 4b8c_D          309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQS  382 (727)
T ss_dssp             CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----------------------
T ss_pred             ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCcccc
Confidence            888999999999999999999999998876543 33589999999998885      4567777777        55555


Q ss_pred             cchhhhcCCCCcEEEccCCccccc
Q 002896          698 IPRCFEEMNGLLYIDISYNELHGP  721 (869)
Q Consensus       698 ~p~~l~~l~~L~~L~ls~N~l~g~  721 (869)
                      .+..+..+..+....+++|-+.+.
T Consensus       383 ~~~~~~~l~~~~~~~ls~Nil~~~  406 (727)
T 4b8c_D          383 TEHLATDLAKRTFTVLSYNTLCQH  406 (727)
T ss_dssp             -------------------CCCGG
T ss_pred             ccchhhcccccceeeeeccccccc
Confidence            666667777788889999988643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=1.8e-17  Score=171.76  Aligned_cols=167  Identities=20%  Similarity=0.245  Sum_probs=111.4

Q ss_pred             CcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCcccccccccc
Q 002896          540 LGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSS  619 (869)
Q Consensus       540 L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  619 (869)
                      +..+++++|.+++..  .+..+++|++|++++|.++. ++ .+..+++|+.|++++|++.+..+  +..+++|++|++++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            333444444443221  34445555555555555542 23 45556666666666666655444  56677777777777


Q ss_pred             ccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcc
Q 002896          620 NRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP  699 (869)
Q Consensus       620 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  699 (869)
                      |++++. |. +.. ++|+.|++++|++++.  ..+..+++|++|++++|++++. + .+..+++|+.|++++|++++.  
T Consensus        95 N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--  165 (263)
T 1xeu_A           95 NRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--  165 (263)
T ss_dssp             SCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred             CccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence            777653 22 222 7788888888887764  3577888888888888888665 3 578888888888888888887  


Q ss_pred             hhhhcCCCCcEEEccCCccccc
Q 002896          700 RCFEEMNGLLYIDISYNELHGP  721 (869)
Q Consensus       700 ~~l~~l~~L~~L~ls~N~l~g~  721 (869)
                      ..+..+++|+.|++++|++++.
T Consensus       166 ~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TTSTTCCCCCEEEEEEEEEECC
T ss_pred             HHhccCCCCCEEeCCCCcccCC
Confidence            6678888899999999988775

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=3.4e-17  Score=160.94  Aligned_cols=155  Identities=23%  Similarity=0.253  Sum_probs=96.7

Q ss_pred             ccceeeccCccccccCcc-cccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccc
Q 002896          587 SLIKLILRRNQLFGQLPS-ELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDL  665 (869)
Q Consensus       587 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  665 (869)
                      +|+.|++++|.+.+..+. .|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            455555555555544443 3556667777777777777666777777777777777777777777766777777777777


Q ss_pred             cccccCCchhhhhcCCCCCcEEeCCCCCCCCCcch-hhhcCCCCcEEEccCCcccccCCCCccccccchhhhcCCCCCCC
Q 002896          666 SHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPR-CFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCG  744 (869)
Q Consensus       666 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~  744 (869)
                      ++|++++.+|..|..+++|++|+|++|++++..+- .+..  .++...+..+...|..|..  +.......+..+...|.
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~P~~--l~~~~l~~l~~~~~~C~  185 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCS  185 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCC
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCCCChH--HcCCChhhCcHhhcCcC
Confidence            77777777777777888888888888888776442 1111  1222234556666666642  22222233444555564


Q ss_pred             C
Q 002896          745 D  745 (869)
Q Consensus       745 ~  745 (869)
                      .
T Consensus       186 ~  186 (192)
T 1w8a_A          186 S  186 (192)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=8.7e-20  Score=209.52  Aligned_cols=189  Identities=20%  Similarity=0.224  Sum_probs=109.8

Q ss_pred             CCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCC-------------CCCCCCccccCCCcCceee-ccCcccCC
Q 002896          128 GNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQ-------------LSGPIPHEVGGLSSLNELA-LTSNFLKG  193 (869)
Q Consensus       128 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-L~~n~l~~  193 (869)
                      ..+++|+.|+|++|.+. .+|..+++|++|+.|++++|.             ..+.+|..++++++|++|+ ++.|.+  
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence            45667777777777765 567667777777777665543             3444555556666666665 444432  


Q ss_pred             CCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCC
Q 002896          194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGN  273 (869)
Q Consensus       194 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  273 (869)
                               .+|+.+.+++|.+....+      ..|++|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+++
T Consensus       423 ---------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~  484 (567)
T 1dce_A          423 ---------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA  484 (567)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred             ---------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence                     234444455554442111      136666666666664 444 566666666666666665 55556666


Q ss_pred             CccCCccccCcccCCcccCccccCCCCCCeeecccccccCCC-CCcccCCCCCCeEeccCCcccccc
Q 002896          274 LKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSI-PSEIGNLKSLSGLELADNELSSSI  339 (869)
Q Consensus       274 l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~  339 (869)
                      +++|+.|++++|++++ +| .++.+++|++|++++|.+++.. |..++.+++|+.|++++|.+++..
T Consensus       485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            6666666666666654 34 5566666666666666666554 555666666666666666655543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=5.1e-19  Score=203.10  Aligned_cols=198  Identities=19%  Similarity=0.173  Sum_probs=141.4

Q ss_pred             cCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccce
Q 002896          511 GIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIK  590 (869)
Q Consensus       511 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  590 (869)
                      ...+.|+.|++++|.++ .+|..++.|++|+.|++++|.....+|.           .+..+...+.+|..++.+++|+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~-----------ll~~~~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL-----------LMRALDPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH-----------HHHHHCTGGGHHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH-----------HHHhcccccCCHHHHHHHHhccc
Confidence            34566666777766665 4455566666666666544321000000           00011134555666667777777


Q ss_pred             ee-ccCccccccCcc-----ccc--CCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhccccccc
Q 002896          591 LI-LRRNQLFGQLPS-----ELG--SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSE  662 (869)
Q Consensus       591 L~-L~~n~l~~~~~~-----~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  662 (869)
                      |+ ++.|.+......     .+.  ....|+.|++++|.+++ +|. ++.+++|+.|+|++|+++ .+|..++.+++|+.
T Consensus       414 L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~  490 (567)
T 1dce_A          414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV  490 (567)
T ss_dssp             HCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCE
T ss_pred             CcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCE
Confidence            76 454433211100     000  11258899999999997 565 999999999999999998 78899999999999


Q ss_pred             ccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCc-chhhhcCCCCcEEEccCCcccccCCCC
Q 002896          663 LDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFI-PRCFEEMNGLLYIDISYNELHGPIPNS  725 (869)
Q Consensus       663 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~~p~~  725 (869)
                      |+|++|.+++ +| .++.+++|+.|+|++|++++.+ |..+..+++|+.|++++|++++..|..
T Consensus       491 L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          491 LQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             EECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             EECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            9999999987 56 8999999999999999999987 999999999999999999999987743

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=4.7e-17  Score=168.54  Aligned_cols=150  Identities=27%  Similarity=0.335  Sum_probs=66.9

Q ss_pred             cCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCC
Q 002896          151 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLS  230 (869)
Q Consensus       151 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  230 (869)
                      +..+++|++|++++|.++ .+| .+..+++|++|++++|++++..+  +.++++|++|++++|.+++. |. +.. ++|+
T Consensus        37 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~  109 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLS  109 (263)
T ss_dssp             HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCC
T ss_pred             hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Cc-ccc-Cccc
Confidence            334444444444444443 222 34444444444444444443322  44444444444444444431 11 111 4455


Q ss_pred             EEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeeccccc
Q 002896          231 SLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNS  310 (869)
Q Consensus       231 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~  310 (869)
                      +|++++|.+++. + .+..+++|++|++++|++++. + .+..+++|++|++++|++++.  ..+..+++|+.|++++|.
T Consensus       110 ~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          110 RLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             EEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred             EEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCc
Confidence            555555554432 1 344455555555555555432 2 344445555555555555433  334455555555555555


Q ss_pred             ccC
Q 002896          311 LSG  313 (869)
Q Consensus       311 ~~~  313 (869)
                      +++
T Consensus       184 ~~~  186 (263)
T 1xeu_A          184 CVN  186 (263)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=3.1e-17  Score=176.35  Aligned_cols=103  Identities=13%  Similarity=0.029  Sum_probs=84.5

Q ss_pred             CccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccc-cccccccccCCchhhhhcCCCCCcEE
Q 002896          609 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLS-ELDLSHNFLGKEIPSQICNMRSLEML  687 (869)
Q Consensus       609 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L  687 (869)
                      +++|+.++|++|+++.+.+.+|.++++|+.|+|++| +....+..|.++++|+ .+++.+ .++...+.+|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            678888888888888777778888888888888887 6666667788888888 888887 7777777888888888888


Q ss_pred             eCCCCCCCCCcchhhhcCCCCcEEEc
Q 002896          688 NLSHNNLSDFIPRCFEEMNGLLYIDI  713 (869)
Q Consensus       688 ~Ls~N~l~~~~p~~l~~l~~L~~L~l  713 (869)
                      ++++|+++.+.+..|.++++|+.++.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            88888888888888888888888763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=1.1e-16  Score=157.33  Aligned_cols=115  Identities=24%  Similarity=0.296  Sum_probs=102.0

Q ss_pred             ccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeC
Q 002896          610 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL  689 (869)
Q Consensus       610 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  689 (869)
                      ++|++|++++|.++ .+|..|.++++|+.|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|+.|+|
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            46777888888887 56678888899999999999998888888999999999999999998888889999999999999


Q ss_pred             CCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCC
Q 002896          690 SHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS  725 (869)
Q Consensus       690 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~  725 (869)
                      ++|++++..+..|..+++|++|++++|++.|.|+..
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~  145 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ  145 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence            999999988888999999999999999999988743

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=5.2e-16  Score=145.78  Aligned_cols=128  Identities=24%  Similarity=0.306  Sum_probs=101.2

Q ss_pred             cccceeeccCcccc-ccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhccccccccc
Q 002896          586 SSLIKLILRRNQLF-GQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELD  664 (869)
Q Consensus       586 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  664 (869)
                      ++|+.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..++.+++|++|++++|++++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            55666666666665 55566666777777777777777765  5778888888899998888887888888888999999


Q ss_pred             ccccccCCc-hhhhhcCCCCCcEEeCCCCCCCCCcc---hhhhcCCCCcEEEccC
Q 002896          665 LSHNFLGKE-IPSQICNMRSLEMLNLSHNNLSDFIP---RCFEEMNGLLYIDISY  715 (869)
Q Consensus       665 Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~  715 (869)
                      +++|.+++. .+..+..+++|++|++++|++++..+   ..+..+++|++||+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999998774 45788899999999999999988766   6788889999998864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=5.5e-16  Score=148.89  Aligned_cols=133  Identities=25%  Similarity=0.324  Sum_probs=91.0

Q ss_pred             cccceeeccCcccc-ccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhccccccccc
Q 002896          586 SSLIKLILRRNQLF-GQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELD  664 (869)
Q Consensus       586 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  664 (869)
                      ++|+.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            34444444444444 34444445566666666666666654  5667777777777777777776777777777788888


Q ss_pred             ccccccCCch-hhhhcCCCCCcEEeCCCCCCCCCcc---hhhhcCCCCcEEEccCCcccc
Q 002896          665 LSHNFLGKEI-PSQICNMRSLEMLNLSHNNLSDFIP---RCFEEMNGLLYIDISYNELHG  720 (869)
Q Consensus       665 Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~N~l~g  720 (869)
                      +++|.+++.. +..+..+++|+.|++++|++++..+   ..+..+++|++|++++|++..
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            8888776643 3677788888888888888887665   577778888888888887653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=5.3e-16  Score=149.03  Aligned_cols=134  Identities=25%  Similarity=0.186  Sum_probs=96.3

Q ss_pred             CCCCEEEccCCccc-ccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeee
Q 002896          562 SQLHVIDLSANHII-GKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLN  640 (869)
Q Consensus       562 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  640 (869)
                      ++|++|++++|.++ +.+|..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+++.+|..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45666666666665 55666666667777777777776655  5566777777777777777776676777777888888


Q ss_pred             CcCCcCCccc-chhhhcccccccccccccccCCchh---hhhcCCCCCcEEeCCCCCCCCC
Q 002896          641 LSTNQFIQEI-PIKLEKLIHLSELDLSHNFLGKEIP---SQICNMRSLEMLNLSHNNLSDF  697 (869)
Q Consensus       641 Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~  697 (869)
                      +++|++++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+...
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            8888776643 2667778888888888888876655   5778888888888888877664

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=2.8e-16  Score=168.97  Aligned_cols=221  Identities=10%  Similarity=0.036  Sum_probs=106.9

Q ss_pred             CCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCc----CCCCCccccCCCCCC
Q 002896          298 LTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS----LSGSIPSEIGNLKSL  373 (869)
Q Consensus       298 l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L  373 (869)
                      +++|+++++.+ .++...+.+|.+|++|+.+++++|.+....+..|..+.++..+....+.    ........|.++..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            56666666655 4544444455666666666666665555555555555555444443311    111122234444444


Q ss_pred             C-EEEccCCcC-CCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEcc
Q 002896          374 S-NLDLSENKL-SGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALY  451 (869)
Q Consensus       374 ~-~L~Ls~n~l-~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~  451 (869)
                      + .+.+....- .......-....+++.+.+.++-...........+++|+++++++|+++.+...+|.++++|+.+++.
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence            4 333322110 00000000122344444444332111111111124555555555555555444455555555555555


Q ss_pred             CCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCC-EEECcCCcCccccCccccCCCCCCEEeCCCCcccccC
Q 002896          452 DNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLI-RLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQI  530 (869)
Q Consensus       452 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~  530 (869)
                      +| +....+.                       .|.++++|+ .+++.+ .++.+.+.+|..+++|+.++++.|.++...
T Consensus       259 ~n-i~~I~~~-----------------------aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~  313 (329)
T 3sb4_A          259 HN-LKTIGQR-----------------------VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG  313 (329)
T ss_dssp             TT-CCEECTT-----------------------TTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred             cc-cceehHH-----------------------HhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccc
Confidence            44 4333334                       455555555 555555 455555666777777777777777776666


Q ss_pred             CcCcCCCCCCcEEE
Q 002896          531 SSDWGKCPNLGTFD  544 (869)
Q Consensus       531 ~~~~~~~~~L~~L~  544 (869)
                      +..|.+|++|+.+.
T Consensus       314 ~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          314 DELFGNGVPSKLIY  327 (329)
T ss_dssp             TTTTCTTCCCCEEE
T ss_pred             hhhhcCCcchhhhc
Confidence            66777777777665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=1.3e-15  Score=147.67  Aligned_cols=116  Identities=25%  Similarity=0.230  Sum_probs=99.0

Q ss_pred             ccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeC
Q 002896          610 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL  689 (869)
Q Consensus       610 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  689 (869)
                      ++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            56777888888877766667788888888888888888777777888888999999999998888888889999999999


Q ss_pred             CCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCC
Q 002896          690 SHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS  725 (869)
Q Consensus       690 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~  725 (869)
                      ++|++++..+..+..+++|++|++++|+++|.+|..
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l  143 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  143 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccCccH
Confidence            999999888778888999999999999999988743

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=6.9e-16  Score=144.90  Aligned_cols=126  Identities=24%  Similarity=0.179  Sum_probs=75.0

Q ss_pred             CCCEEEccCCccc-ccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeC
Q 002896          563 QLHVIDLSANHII-GKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNL  641 (869)
Q Consensus       563 ~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  641 (869)
                      +|+.|++++|.++ +.+|..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            3444444444444 34444444445555555555544443  44455666666666666666556666666667777777


Q ss_pred             cCCcCCcc-cchhhhcccccccccccccccCCchh---hhhcCCCCCcEEeCC
Q 002896          642 STNQFIQE-IPIKLEKLIHLSELDLSHNFLGKEIP---SQICNMRSLEMLNLS  690 (869)
Q Consensus       642 s~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls  690 (869)
                      ++|++++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.||++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            77776653 34566677777777777777766555   566777777777765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.58  E-value=3.4e-14  Score=156.67  Aligned_cols=60  Identities=5%  Similarity=-0.032  Sum_probs=26.5

Q ss_pred             cCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEE
Q 002896          339 IPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAIL  400 (869)
Q Consensus       339 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  400 (869)
                      ....|.++.+|+.+.+..+ ++..-..+|.+|++|+.+++..+ ++.....+|.++++|+.+
T Consensus        63 g~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i  122 (394)
T 4fs7_A           63 GYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSI  122 (394)
T ss_dssp             CTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCC
T ss_pred             HHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhh
Confidence            3344555555555555422 33333344555555555555432 222223344444444443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.57  E-value=1.7e-13  Score=151.09  Aligned_cols=238  Identities=12%  Similarity=0.065  Sum_probs=110.0

Q ss_pred             cccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCC
Q 002896          365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTH  444 (869)
Q Consensus       365 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  444 (869)
                      ..|.+|++|+.+.+.++. .......|.++++|+.+.+..+ +......+|.++..|+.+.+..+...  +.........
T Consensus       156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~  231 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTG  231 (394)
T ss_dssp             TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCC
T ss_pred             hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCC
Confidence            345556666666665432 2233345555556665555544 22233345555666666555544321  1122223345


Q ss_pred             CCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCC
Q 002896          445 MTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHN  524 (869)
Q Consensus       445 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n  524 (869)
                      |+.+.+... ++......+..+..++.+.+..+...-....+..+..++.+......   ....                
T Consensus       232 l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~----------------  291 (394)
T 4fs7_A          232 VKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEK----------------  291 (394)
T ss_dssp             CCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTT----------------
T ss_pred             CceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---eccc----------------
Confidence            555554322 22233334445555555555444332222234444444444433321   1122                


Q ss_pred             cccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcc
Q 002896          525 NFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPS  604 (869)
Q Consensus       525 ~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~  604 (869)
                              .|..+.+|+.+.+.++ +...-...|.+|++|+.+++..+ ++..-..+|.+|++|+.+++..+ +...-..
T Consensus       292 --------~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~  360 (394)
T 4fs7_A          292 --------TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN  360 (394)
T ss_dssp             --------TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred             --------cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence                    3444444444444332 22222334455555555555432 33333345555666666666544 4444455


Q ss_pred             cccCCccccccccccccccccccccccCCCCCCee
Q 002896          605 ELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYL  639 (869)
Q Consensus       605 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  639 (869)
                      +|.++.+|+.+++..+- . .+..+|.++++|+.+
T Consensus       361 aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          361 AFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred             HhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence            56666666666665442 2 223456666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.56  E-value=9e-14  Score=152.42  Aligned_cols=264  Identities=13%  Similarity=0.097  Sum_probs=147.1

Q ss_pred             CCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECc
Q 002896          419 KSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLN  498 (869)
Q Consensus       419 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~  498 (869)
                      ..++.+.+.+ .++.+...+|.++ +|+.+.+.++ ++.....+|.++ +|+.+.+.+                      
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~----------------------  166 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS----------------------  166 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT----------------------
T ss_pred             CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC----------------------
Confidence            4555555543 3444444555553 5666666544 444444444443 355555543                      


Q ss_pred             CCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccC
Q 002896          499 RNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKI  578 (869)
Q Consensus       499 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  578 (869)
                        .++.+....|..+++|+.+++++|.++......|. +.+|+.+.+..+ +...-...|.++++|+.+++..+ ++..-
T Consensus       167 --~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~  241 (401)
T 4fdw_A          167 --TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIG  241 (401)
T ss_dssp             --TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEEC
T ss_pred             --CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcc
Confidence              33333344444444444444444444433333333 344444444422 33333344445555555555443 22222


Q ss_pred             CcccccCcccceeeccCccccccCcccccCCcccccccccccccc-----ccccccccCCCCCCeeeCcCCcCCcccchh
Q 002896          579 PSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLS-----NSIPRSLGNLVKLHYLNLSTNQFIQEIPIK  653 (869)
Q Consensus       579 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  653 (869)
                      ..+|.+ .+|+.+.+ .+.+.......|.++++|+.+++.+|.+.     ...+.+|.+|++|+.++|. +.+...-...
T Consensus       242 ~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~a  318 (401)
T 4fdw_A          242 QEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGL  318 (401)
T ss_dssp             TTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTT
T ss_pred             cccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhh
Confidence            233443 45555555 33344444555666666666666665543     3455677778888888877 3466555667


Q ss_pred             hhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCC-CCcEEEccCCcc
Q 002896          654 LEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMN-GLLYIDISYNEL  718 (869)
Q Consensus       654 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l  718 (869)
                      |.++++|+.++|..| ++...+.+|.++ +|+.+++++|.+....+..|..++ .+..+.+..+.+
T Consensus       319 F~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          319 LGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             TTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             hcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            777788888888544 656666778888 888888888888777777777764 677777776654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=1.1e-14  Score=141.08  Aligned_cols=132  Identities=27%  Similarity=0.260  Sum_probs=91.7

Q ss_pred             CEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCC
Q 002896          565 HVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN  644 (869)
Q Consensus       565 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  644 (869)
                      +.+++++|+++ .+|..+  .++|+.|++++|++.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|
T Consensus        10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            34444444444 223222  245566666666665555555666777777777777777666666777888888888888


Q ss_pred             cCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcc
Q 002896          645 QFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP  699 (869)
Q Consensus       645 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  699 (869)
                      ++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            8877777677788888888888888877666667788888888888888887655

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=2.8e-14  Score=139.93  Aligned_cols=107  Identities=29%  Similarity=0.435  Sum_probs=46.8

Q ss_pred             cCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeecc
Q 002896          132 MLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH  211 (869)
Q Consensus       132 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  211 (869)
                      +|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            3444444444443 333444444444444444444443333344444444444444444444444444444444444444


Q ss_pred             ccCCCCCCCccccCCCCCCEEEccCCcC
Q 002896          212 NNSLSGSIPSEIGNLKSLSSLALGNNKL  239 (869)
Q Consensus       212 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l  239 (869)
                      +|.+++..+..+..+++|++|++++|.+
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            4444433333344444455555554444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.55  E-value=1.8e-13  Score=150.08  Aligned_cols=100  Identities=12%  Similarity=0.087  Sum_probs=57.5

Q ss_pred             CCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEE
Q 002896          370 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLA  449 (869)
Q Consensus       370 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  449 (869)
                      +..++.+.+.+ .++.....+|.++ +|+.+.+..+ +...-..+|.++ +|+.+.+.+ .+......+|.+|++|+.++
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            46677777764 3444455666664 6777777655 444444556554 466666664 45555555566666666666


Q ss_pred             ccCCCCcccCCccccCCCCCcEEecC
Q 002896          450 LYDNALSGVIPEELGNLVKLTMLTLS  475 (869)
Q Consensus       450 l~~n~l~~~~~~~~~~l~~L~~L~Ls  475 (869)
                      +.+|.++......|. +.+|+.+.+.
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             cCCCcceEechhhEe-ecccCEEEeC
Confidence            666655554444444 3455555554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.53  E-value=2.1e-16  Score=156.21  Aligned_cols=151  Identities=22%  Similarity=0.233  Sum_probs=100.3

Q ss_pred             CCCEEEccCCcccccCCc------ccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCC
Q 002896          563 QLHVIDLSANHIIGKIPS------EIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKL  636 (869)
Q Consensus       563 ~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  636 (869)
                      .++.++++.+.+.+.+|.      .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            344444444444444443      56666666677776666665 34 5666777777777777776 456666666777


Q ss_pred             CeeeCcCCcCCcccchhhhcccccccccccccccCCchh-hhhcCCCCCcEEeCCCCCCCCCcchh----------hhcC
Q 002896          637 HYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIP-SQICNMRSLEMLNLSHNNLSDFIPRC----------FEEM  705 (869)
Q Consensus       637 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l  705 (869)
                      +.|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|++++.+|..          +..+
T Consensus        96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l  173 (198)
T 1ds9_A           96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL  173 (198)
T ss_dssp             SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred             CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence            777777777765 34 57777778888888887765433 56777788888888888777665542          6777


Q ss_pred             CCCcEEEccCCcccc
Q 002896          706 NGLLYIDISYNELHG  720 (869)
Q Consensus       706 ~~L~~L~ls~N~l~g  720 (869)
                      ++|++||  +|+++.
T Consensus       174 ~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          174 PNLKKLD--GMPVDV  186 (198)
T ss_dssp             SSCSEEC--CGGGTT
T ss_pred             CCcEEEC--CcccCH
Confidence            7888776  555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=1.4e-14  Score=140.15  Aligned_cols=135  Identities=19%  Similarity=0.157  Sum_probs=100.5

Q ss_pred             cccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccc
Q 002896          582 IGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLS  661 (869)
Q Consensus       582 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  661 (869)
                      +..+++|+.|++++|.+... |......++|++|++++|.+++.  ..+..+++|++|++++|++++..+..+..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            44455666666666666543 33222233788888888888765  5788888899999999988876556668888999


Q ss_pred             cccccccccCCchhh--hhcCCCCCcEEeCCCCCCCCCcch---hhhcCCCCcEEEccCCcccc
Q 002896          662 ELDLSHNFLGKEIPS--QICNMRSLEMLNLSHNNLSDFIPR---CFEEMNGLLYIDISYNELHG  720 (869)
Q Consensus       662 ~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~ls~N~l~g  720 (869)
                      +|++++|.+ +.+|.  .+..+++|+.|++++|+++...+.   .+..+++|++||+++|....
T Consensus        92 ~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           92 ELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            999999998 44555  788899999999999999864332   48889999999999997654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.52  E-value=1e-14  Score=139.98  Aligned_cols=114  Identities=22%  Similarity=0.264  Sum_probs=99.0

Q ss_pred             ccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCC
Q 002896          612 LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSH  691 (869)
Q Consensus       612 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  691 (869)
                      .+.+++++|.++. +|..+.  ++|+.|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4678888888874 565553  7899999999999998898999999999999999999988888889999999999999


Q ss_pred             CCCCCCcchhhhcCCCCcEEEccCCcccccCCCCccc
Q 002896          692 NNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAF  728 (869)
Q Consensus       692 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~~~  728 (869)
                      |+|++..+..|..+++|++|++++|+++|.++....+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l  124 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYL  124 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHH
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHH
Confidence            9999988888999999999999999999998754333

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=3.2e-16  Score=154.95  Aligned_cols=133  Identities=23%  Similarity=0.228  Sum_probs=98.5

Q ss_pred             CcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCC
Q 002896          557 EIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKL  636 (869)
Q Consensus       557 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  636 (869)
                      .+..+++|++|++++|++++ +| .+..+++|+.|++++|.+. .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence            56667777777777777765 55 6777777777777777776 455666667788888888888876 34 57778888


Q ss_pred             CeeeCcCCcCCcccc-hhhhcccccccccccccccCCchhh----------hhcCCCCCcEEeCCCCCCCC
Q 002896          637 HYLNLSTNQFIQEIP-IKLEKLIHLSELDLSHNFLGKEIPS----------QICNMRSLEMLNLSHNNLSD  696 (869)
Q Consensus       637 ~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~----------~l~~l~~L~~L~Ls~N~l~~  696 (869)
                      +.|++++|++++..+ ..+..+++|++|++++|.+++.+|.          .+..+++|+.||  +|.++.
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            888888888866433 4677888888888888888777664          378889999887  666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=4.6e-14  Score=136.47  Aligned_cols=133  Identities=20%  Similarity=0.167  Sum_probs=67.3

Q ss_pred             cCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCcccc
Q 002896          534 WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLE  613 (869)
Q Consensus       534 ~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  613 (869)
                      +..+++|+.|++++|+++. +|......++|++|++++|.+++.  ..+.                        .+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~------------------------~l~~L~   67 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFP------------------------LLRRLK   67 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCC------------------------CCSSCC
T ss_pred             cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccc------------------------cCCCCC
Confidence            3445566666666666553 232222222555555555555543  3344                        445555


Q ss_pred             ccccccccccccccccccCCCCCCeeeCcCCcCCcccch--hhhcccccccccccccccCCchhh----hhcCCCCCcEE
Q 002896          614 YLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPI--KLEKLIHLSELDLSHNFLGKEIPS----QICNMRSLEML  687 (869)
Q Consensus       614 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L  687 (869)
                      +|++++|.+++..+..+..+++|+.|++++|++. .+|.  .+..+++|+.|++++|.++. +|.    .+..+++|+.|
T Consensus        68 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~L  145 (176)
T 1a9n_A           68 TLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVL  145 (176)
T ss_dssp             EEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEE
T ss_pred             EEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCcccee
Confidence            5555555555433333455555555555555552 2333  45555555555555555542 233    25556666666


Q ss_pred             eCCCCCCC
Q 002896          688 NLSHNNLS  695 (869)
Q Consensus       688 ~Ls~N~l~  695 (869)
                      |+++|.+.
T Consensus       146 d~~~n~~~  153 (176)
T 1a9n_A          146 DFQKVKLK  153 (176)
T ss_dssp             TTEECCHH
T ss_pred             CCCcCCHH
Confidence            66666544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.46  E-value=1.1e-13  Score=133.07  Aligned_cols=110  Identities=21%  Similarity=0.273  Sum_probs=95.1

Q ss_pred             cccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCC
Q 002896          613 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHN  692 (869)
Q Consensus       613 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  692 (869)
                      +.+++++|.+. .+|..+.  ++|+.|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            56788888875 5566554  78899999999998888888999999999999999998877777899999999999999


Q ss_pred             CCCCCcchhhhcCCCCcEEEccCCcccccCCCC
Q 002896          693 NLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS  725 (869)
Q Consensus       693 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~  725 (869)
                      +|++..+..|..+++|++|++++|++.|.++..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~  124 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDI  124 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccccH
Confidence            999988888999999999999999999987643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.34  E-value=1.3e-10  Score=127.90  Aligned_cols=155  Identities=9%  Similarity=0.086  Sum_probs=80.6

Q ss_pred             ccccCCCC-CCCEEEccCCCCCCCCCCCCCCCccCCccccCccc---CCcccCccccCCCCCCeeecccccccCCCCCcc
Q 002896          244 PLFLGNLT-NLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENR---LNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI  319 (869)
Q Consensus       244 ~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~---~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l  319 (869)
                      ..+|.+++ .|+.+.+..+ ++..-..+|.+|++|+.+.+..|.   ++.....+|..+.+|+.+.+..+ ++......|
T Consensus        56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF  133 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF  133 (394)
T ss_dssp             TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred             HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence            34566653 4788877653 554555677777778777776653   44344455666667776666543 332334456


Q ss_pred             cCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccE
Q 002896          320 GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAI  399 (869)
Q Consensus       320 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  399 (869)
                      ..+.+|+.+.+..+ +.......|..+..|+.+.+..+ +...-...|. ..+|+.+.+..+-. .....+|..+..++.
T Consensus       134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~  209 (394)
T 4gt6_A          134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALST  209 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCE
T ss_pred             hhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhccccce
Confidence            66666666666532 23333445555566666555433 2212222332 23455555543321 122334445555554


Q ss_pred             EEccC
Q 002896          400 LYLHS  404 (869)
Q Consensus       400 L~L~~  404 (869)
                      .....
T Consensus       210 ~~~~~  214 (394)
T 4gt6_A          210 ITSDS  214 (394)
T ss_dssp             EEECC
T ss_pred             ecccc
Confidence            44433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.34  E-value=4.6e-12  Score=121.33  Aligned_cols=86  Identities=24%  Similarity=0.206  Sum_probs=51.3

Q ss_pred             CCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeec
Q 002896          107 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELAL  186 (869)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  186 (869)
                      ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|.+++..+..|.++++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            56666666666666555666666666666666666666444445556666666666666665444444555555555555


Q ss_pred             cCcccC
Q 002896          187 TSNFLK  192 (869)
Q Consensus       187 ~~n~l~  192 (869)
                      ++|.+.
T Consensus       110 ~~N~~~  115 (170)
T 3g39_A          110 LNNPWD  115 (170)
T ss_dssp             CSSCBC
T ss_pred             CCCCCC
Confidence            555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.34  E-value=4.4e-11  Score=131.70  Aligned_cols=155  Identities=12%  Similarity=0.118  Sum_probs=81.9

Q ss_pred             CCCcccCCC-CCCeEeccCCccccccCCCCcCccccceeeccCCc---CCCCCccccCCCCCCCEEEccCCcCCCCCCCC
Q 002896          315 IPSEIGNLK-SLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS---LSGSIPSEIGNLKSLSNLDLSENKLSGSIPHS  390 (869)
Q Consensus       315 ~p~~l~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  390 (869)
                      -..+|.++. .|+.+.+..+ ++......|.++.+|+.+.+..+.   ++..-..+|.+|.+|+.+.+..+ ++.....+
T Consensus        55 g~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a  132 (394)
T 4gt6_A           55 GDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA  132 (394)
T ss_dssp             CTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred             CHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence            344566664 4777777653 555556677777777777776553   33333455666777776666543 33334455


Q ss_pred             CCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCc
Q 002896          391 LGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLT  470 (869)
Q Consensus       391 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  470 (869)
                      |..+.+|+.+.+..+. .......|..+..|+.+.+..+ +......+|.+ ..|+.+.+..+. .......|..+.+++
T Consensus       133 F~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~  208 (394)
T 4gt6_A          133 FHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALS  208 (394)
T ss_dssp             TTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCC
T ss_pred             hhhhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchhhhccccc
Confidence            6666666666665432 2233445566666666666543 33233333332 345555554332 222333444444444


Q ss_pred             EEecC
Q 002896          471 MLTLS  475 (869)
Q Consensus       471 ~L~Ls  475 (869)
                      .....
T Consensus       209 ~~~~~  213 (394)
T 4gt6_A          209 TITSD  213 (394)
T ss_dssp             EEEEC
T ss_pred             eeccc
Confidence            44443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.31  E-value=7.8e-12  Score=120.10  Aligned_cols=103  Identities=22%  Similarity=0.288  Sum_probs=56.5

Q ss_pred             EEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCC
Q 002896           86 SINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKN  165 (869)
Q Consensus        86 ~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n  165 (869)
                      .+++++.. + +.+|..+.  ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus        16 ~l~~~~n~-l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           16 LVNCQNIR-L-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             EEECCSSC-C-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCC-C-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            34444443 3 34454443  56666666666666555566666666666666666665443444555666666666666


Q ss_pred             CCCCCCCccccCCCcCceeeccCcccC
Q 002896          166 QLSGPIPHEVGGLSSLNELALTSNFLK  192 (869)
Q Consensus       166 ~l~~~~p~~~~~l~~L~~L~L~~n~l~  192 (869)
                      .+++..+..|.++++|++|++++|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            555443334555555555555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.31  E-value=2.9e-13  Score=146.88  Aligned_cols=158  Identities=23%  Similarity=0.256  Sum_probs=99.9

Q ss_pred             CCCEEEccCCcccccCCccccc-----CcccceeeccCccccccCccc-ccCCccccccccccccccccccccc-----c
Q 002896          563 QLHVIDLSANHIIGKIPSEIGK-----LSSLIKLILRRNQLFGQLPSE-LGSLIQLEYLDLSSNRLSNSIPRSL-----G  631 (869)
Q Consensus       563 ~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~-----~  631 (869)
                      .|+.|++++|.++......+..     .++|+.|+|++|.+....... ...+++|++|+|++|.++......+     .
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            4555555555554322222221     246666666666654332222 2234567777777777765433333     2


Q ss_pred             CCCCCCeeeCcCCcCCcc----cchhhhcccccccccccccccCCc----hhhhhcCCCCCcEEeCCCCCCCCC----cc
Q 002896          632 NLVKLHYLNLSTNQFIQE----IPIKLEKLIHLSELDLSHNFLGKE----IPSQICNMRSLEMLNLSHNNLSDF----IP  699 (869)
Q Consensus       632 ~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p  699 (869)
                      ..++|+.|+|++|.++..    ++..+..+++|++|+|++|.++..    +++.+...++|+.|+|++|.+++.    ++
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~  232 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA  232 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence            456788888888887542    344456777888888888888653    356677778888888888888764    33


Q ss_pred             hhhhcCCCCcEEEccCCcccc
Q 002896          700 RCFEEMNGLLYIDISYNELHG  720 (869)
Q Consensus       700 ~~l~~l~~L~~L~ls~N~l~g  720 (869)
                      ..+...++|++||+++|+++.
T Consensus       233 ~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          233 RAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHhCCCCCEEeccCCCCCH
Confidence            445566888888998888764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.29  E-value=1.2e-13  Score=149.94  Aligned_cols=144  Identities=22%  Similarity=0.224  Sum_probs=100.1

Q ss_pred             CCCCEEEccCCcccccCCccc-ccCcccceeeccCccccccCcccc-----cCCccccccccccccccc----ccccccc
Q 002896          562 SQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSEL-----GSLIQLEYLDLSSNRLSN----SIPRSLG  631 (869)
Q Consensus       562 ~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~----~~~~~~~  631 (869)
                      ++|++|+|++|.++......+ ..+++|+.|+|++|.+.......+     ...++|++|+|++|.++.    .++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            456666666666543222222 235567777777777654433332     245778888888888865    2344557


Q ss_pred             CCCCCCeeeCcCCcCCcc----cchhhhcccccccccccccccCCc----hhhhhcCCCCCcEEeCCCCCCCCCcchhhh
Q 002896          632 NLVKLHYLNLSTNQFIQE----IPIKLEKLIHLSELDLSHNFLGKE----IPSQICNMRSLEMLNLSHNNLSDFIPRCFE  703 (869)
Q Consensus       632 ~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  703 (869)
                      .+++|++|||++|++...    ++..+...++|++|+|++|.|+..    ++..+...++|++|||++|.|++.....+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence            788899999999998653    355677788999999999999764    445566789999999999999887666665


Q ss_pred             cC
Q 002896          704 EM  705 (869)
Q Consensus       704 ~l  705 (869)
                      .+
T Consensus       261 ~~  262 (372)
T 3un9_A          261 DL  262 (372)
T ss_dssp             HC
T ss_pred             HH
Confidence            54

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=5.3e-12  Score=136.65  Aligned_cols=107  Identities=21%  Similarity=0.182  Sum_probs=86.9

Q ss_pred             ccccccc-cccccccccccCCCCCCeeeCcC-CcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCC
Q 002896          614 YLDLSSN-RLSNSIPRSLGNLVKLHYLNLST-NQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSH  691 (869)
Q Consensus       614 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  691 (869)
                      .++++++ .+++ +|. +..+++|+.|+|++ |++.+..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4567776 6763 666 88888888888885 888877778888888888888888888888888888888888888888


Q ss_pred             CCCCCCcchhhhcCCCCcEEEccCCcccccCC
Q 002896          692 NNLSDFIPRCFEEMNGLLYIDISYNELHGPIP  723 (869)
Q Consensus       692 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p  723 (869)
                      |+|++..+..|..++ |+.|++++|+|.|.|+
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence            888887777777665 8888888888888776

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.16  E-value=2.4e-11  Score=131.47  Aligned_cols=103  Identities=22%  Similarity=0.176  Sum_probs=59.8

Q ss_pred             EEEccCC-cccccCCcccccCcccceeeccC-ccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcC
Q 002896          566 VIDLSAN-HIIGKIPSEIGKLSSLIKLILRR-NQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLST  643 (869)
Q Consensus       566 ~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  643 (869)
                      .++++++ +++ .+|. +..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|++++..|..|.++++|+.|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4566666 565 3555 66666666666664 666655555566666666666666666655555556666666666666


Q ss_pred             CcCCcccchhhhcccccccccccccccC
Q 002896          644 NQFIQEIPIKLEKLIHLSELDLSHNFLG  671 (869)
Q Consensus       644 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  671 (869)
                      |++++..+..+..+. |+.|+|.+|.+.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            665554444444433 555555555553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.14  E-value=6.3e-09  Score=113.82  Aligned_cols=127  Identities=5%  Similarity=0.006  Sum_probs=63.7

Q ss_pred             cccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCC
Q 002896          294 SLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL  373 (869)
Q Consensus       294 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  373 (869)
                      ++....+|+.+.+.. .++..-..+|.+|.+|+.+++..+ ++......|.++ +|+.+.+..+ +.......|..+ +|
T Consensus        41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L  115 (379)
T 4h09_A           41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL  115 (379)
T ss_dssp             TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred             ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence            455566777777754 344444566777888888877643 554445556655 4666555432 322222334433 56


Q ss_pred             CEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCC
Q 002896          374 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGD  428 (869)
Q Consensus       374 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  428 (869)
                      +.+++..+ +.......|.++ +++.+.+..+ ++......+..+..++.+.+..
T Consensus       116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~  167 (379)
T 4h09_A          116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS  167 (379)
T ss_dssp             SEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred             ccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhccccccccccccc
Confidence            66666543 221222334333 3444444332 2222233444555555544443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.11  E-value=1.2e-08  Score=111.53  Aligned_cols=130  Identities=9%  Similarity=0.015  Sum_probs=82.9

Q ss_pred             CCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCcccc
Q 002896          270 EIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNL  349 (869)
Q Consensus       270 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  349 (869)
                      ++....+|+.+.+.. .++.....+|.++.+|+.+.+..+ ++..-..+|.++ +|+.+.+..+ +.......|.. .+|
T Consensus        41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L  115 (379)
T 4h09_A           41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL  115 (379)
T ss_dssp             TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred             ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence            456667788888865 355455667888999999998754 554555667776 6777777643 44344445554 478


Q ss_pred             ceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCcc
Q 002896          350 AAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL  407 (869)
Q Consensus       350 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  407 (869)
                      +.+.+..+- .......|.++ +++.+.+..+ ++......|..+..++.+.+..+..
T Consensus       116 ~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~  170 (379)
T 4h09_A          116 DDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNK  170 (379)
T ss_dssp             SEEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCS
T ss_pred             ccccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccc
Confidence            888886542 22333445554 5676666543 3334456777888888887766543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.86  E-value=8.7e-10  Score=118.40  Aligned_cols=84  Identities=20%  Similarity=0.305  Sum_probs=55.8

Q ss_pred             CCCCCCeeeCcCCcCCcccchhhh---cccccccccccccccCCch----hhhhcCCCCCcEEeCCCCCCCCCcchhhhc
Q 002896          632 NLVKLHYLNLSTNQFIQEIPIKLE---KLIHLSELDLSHNFLGKEI----PSQICNMRSLEMLNLSHNNLSDFIPRCFEE  704 (869)
Q Consensus       632 ~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  704 (869)
                      .+++|+.|+|++|.+....+..+.   .+++|++|+|+.|.+++..    +..+..+++|+.|+|++|.++...-..+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            467888888888877654444443   4677888888888876643    333455678888888888777654444443


Q ss_pred             -CCCCcEEEccCCc
Q 002896          705 -MNGLLYIDISYNE  717 (869)
Q Consensus       705 -l~~L~~L~ls~N~  717 (869)
                       +  ...+++++|+
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             2  3567777776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.78  E-value=2.4e-09  Score=114.99  Aligned_cols=138  Identities=17%  Similarity=0.234  Sum_probs=92.1

Q ss_pred             cccccCcccceeeccCccccccCcccccCCcccccccccccccccccccccc--CCCCCCeeeCcC--CcCCcc-----c
Q 002896          580 SEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLG--NLVKLHYLNLST--NQFIQE-----I  650 (869)
Q Consensus       580 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~--N~l~~~-----~  650 (869)
                      ..+..+|+|+.|++++|.-.. ++. + .+++|+.|+|..|.+.......+.  .+++|+.|+|+.  |...+.     +
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            334556777777776663111 222 2 367788888877776554333333  678888888753  221111     1


Q ss_pred             chhh--hcccccccccccccccCCchhhhhc---CCCCCcEEeCCCCCCCCC----cchhhhcCCCCcEEEccCCcccc
Q 002896          651 PIKL--EKLIHLSELDLSHNFLGKEIPSQIC---NMRSLEMLNLSHNNLSDF----IPRCFEEMNGLLYIDISYNELHG  720 (869)
Q Consensus       651 p~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~g  720 (869)
                      ...+  ..+++|++|+|++|.+....+..+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|++++|.++.
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            1122  3578999999999999766555554   578999999999999875    34445667999999999998763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.59  E-value=2.9e-08  Score=96.08  Aligned_cols=113  Identities=15%  Similarity=0.183  Sum_probs=75.1

Q ss_pred             cCCccccccccccc-cccc----cccccccCCCCCCeeeCcCCcCCcc----cchhhhcccccccccccccccCCc----
Q 002896          607 GSLIQLEYLDLSSN-RLSN----SIPRSLGNLVKLHYLNLSTNQFIQE----IPIKLEKLIHLSELDLSHNFLGKE----  673 (869)
Q Consensus       607 ~~l~~L~~L~Ls~n-~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----  673 (869)
                      ...++|++|+|++| .+..    .+...+...++|++|+|++|++...    +...+...++|++|+|++|.|+..    
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            34555666666665 5543    1233455567777777877777543    334455557788888888887654    


Q ss_pred             hhhhhcCCCCCcEEeC--CCCCCCCC----cchhhhcCCCCcEEEccCCccc
Q 002896          674 IPSQICNMRSLEMLNL--SHNNLSDF----IPRCFEEMNGLLYIDISYNELH  719 (869)
Q Consensus       674 ~p~~l~~l~~L~~L~L--s~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~  719 (869)
                      +.+.+...++|++|+|  ++|.+...    +...+...++|++|++++|.+.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            4566677788888888  77888765    3345556688888998888774

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.50  E-value=2.9e-08  Score=100.80  Aligned_cols=80  Identities=33%  Similarity=0.388  Sum_probs=43.4

Q ss_pred             cCCCCCCeeeCcCCcCCc--ccchhhhcccccccccccccccCCchhhhhcCCC--CCcEEeCCCCCCCCCcc-------
Q 002896          631 GNLVKLHYLNLSTNQFIQ--EIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMR--SLEMLNLSHNNLSDFIP-------  699 (869)
Q Consensus       631 ~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p-------  699 (869)
                      .++++|+.|+|++|++++  .+|..+..+++|+.|+|++|+|++.  +.+..++  +|++|+|++|++++.+|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            445666666666666665  3345555666666666666666544  1222222  56666666666655433       


Q ss_pred             hhhhcCCCCcEEE
Q 002896          700 RCFEEMNGLLYID  712 (869)
Q Consensus       700 ~~l~~l~~L~~L~  712 (869)
                      ..+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2244555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.47  E-value=4.4e-08  Score=94.74  Aligned_cols=89  Identities=16%  Similarity=0.173  Sum_probs=56.9

Q ss_pred             cCCcccccccccccccccc----ccccccCCCCCCeeeCcCCcCCcc----cchhhhcccccccccc--cccccCCc---
Q 002896          607 GSLIQLEYLDLSSNRLSNS----IPRSLGNLVKLHYLNLSTNQFIQE----IPIKLEKLIHLSELDL--SHNFLGKE---  673 (869)
Q Consensus       607 ~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L--s~N~l~~~---  673 (869)
                      ...++|++|+|++|.+...    +...+...++|++|+|++|.+...    +...+...++|++|+|  ++|.++..   
T Consensus        62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~  141 (185)
T 1io0_A           62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  141 (185)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence            3445566666666665432    233445556777777777777643    3445566677788888  77777654   


Q ss_pred             -hhhhhcCCCCCcEEeCCCCCCC
Q 002896          674 -IPSQICNMRSLEMLNLSHNNLS  695 (869)
Q Consensus       674 -~p~~l~~l~~L~~L~Ls~N~l~  695 (869)
                       +.+.+...++|++|+|++|.+.
T Consensus       142 ~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          142 EIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCcCEEeccCCCCC
Confidence             3455566688888888888765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.35  E-value=8e-08  Score=97.52  Aligned_cols=105  Identities=26%  Similarity=0.241  Sum_probs=71.9

Q ss_pred             cccCcccce--eeccCccc---cccCcccccCCccccccccccccccc--cccccccCCCCCCeeeCcCCcCCcccchhh
Q 002896          582 IGKLSSLIK--LILRRNQL---FGQLPSELGSLIQLEYLDLSSNRLSN--SIPRSLGNLVKLHYLNLSTNQFIQEIPIKL  654 (869)
Q Consensus       582 l~~l~~L~~--L~L~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  654 (869)
                      +...+.|+.  ++++.|..   .+.++....++++|++|+|++|++++  .+|..+..+++|+.|+|++|++.+.  ..+
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l  214 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL  214 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence            344455554  55666632   22222222467788888888888887  4456677888899999999988765  334


Q ss_pred             hccc--ccccccccccccCCchh-------hhhcCCCCCcEEe
Q 002896          655 EKLI--HLSELDLSHNFLGKEIP-------SQICNMRSLEMLN  688 (869)
Q Consensus       655 ~~l~--~L~~L~Ls~N~l~~~~p-------~~l~~l~~L~~L~  688 (869)
                      ..+.  .|++|+|++|.+.+.+|       ..+..+|+|+.||
T Consensus       215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            4444  88899999999887554       4577889999886

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.96  E-value=3.5e-06  Score=79.05  Aligned_cols=84  Identities=13%  Similarity=0.118  Sum_probs=57.3

Q ss_pred             ccccccccccccccccccccccCCCCCCeeeCcCCc-CCcccchhhhcc----cccccccccccc-cCCchhhhhcCCCC
Q 002896          610 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQ-FIQEIPIKLEKL----IHLSELDLSHNF-LGKEIPSQICNMRS  683 (869)
Q Consensus       610 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~  683 (869)
                      ..|+.||+++|.++...-..+..+++|+.|+|++|. ++..--..+..+    ++|++|+|++|. ++...-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            357777777777766555566777888888888875 554444445543    367788887774 76665566777777


Q ss_pred             CcEEeCCCCC
Q 002896          684 LEMLNLSHNN  693 (869)
Q Consensus       684 L~~L~Ls~N~  693 (869)
                      |++|+|+++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777777774

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.88  E-value=5.1e-06  Score=77.94  Aligned_cols=91  Identities=11%  Similarity=0.119  Sum_probs=74.5

Q ss_pred             cccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccc-cCCchhhhhcCC----CCCcEEeCCCCC-CCCCcch
Q 002896          627 PRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNF-LGKEIPSQICNM----RSLEMLNLSHNN-LSDFIPR  700 (869)
Q Consensus       627 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~p~  700 (869)
                      |.....-..|+.||++++.++..--..+.++++|+.|+|++|. ++...-..+..+    ++|++|+|++|. ++..--.
T Consensus        54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            4333333579999999999887766778899999999999995 877766777775    489999999985 8876667


Q ss_pred             hhhcCCCCcEEEccCCc
Q 002896          701 CFEEMNGLLYIDISYNE  717 (869)
Q Consensus       701 ~l~~l~~L~~L~ls~N~  717 (869)
                      .+..+++|++|++++++
T Consensus       134 ~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          134 ALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HGGGCTTCCEEEEESCT
T ss_pred             HHhcCCCCCEEECCCCC
Confidence            78889999999999886

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.57  E-value=7.2e-05  Score=71.52  Aligned_cols=110  Identities=19%  Similarity=0.252  Sum_probs=63.7

Q ss_pred             CCccccccccccc-cccc----cccccccCCCCCCeeeCcCCcCCc----ccchhhhcccccccccccccccCCc----h
Q 002896          608 SLIQLEYLDLSSN-RLSN----SIPRSLGNLVKLHYLNLSTNQFIQ----EIPIKLEKLIHLSELDLSHNFLGKE----I  674 (869)
Q Consensus       608 ~l~~L~~L~Ls~n-~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~  674 (869)
                      +-+.|++|+|++| .+..    .+.+.+..-+.|+.|+|++|++..    .+...+..-+.|++|+|++|.|+..    +
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3345566666654 4432    233445556677777777777753    2334455556777777777777544    3


Q ss_pred             hhhhcCCCCCcEEeCCCCC---CCCC----cchhhhcCCCCcEEEccCCc
Q 002896          675 PSQICNMRSLEMLNLSHNN---LSDF----IPRCFEEMNGLLYIDISYNE  717 (869)
Q Consensus       675 p~~l~~l~~L~~L~Ls~N~---l~~~----~p~~l~~l~~L~~L~ls~N~  717 (869)
                      -+.+..-+.|++|+|++|.   +...    +...+..-+.|..|++++|.
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            3455566677777777553   3321    33445555677777776553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.28  E-value=0.00024  Score=63.56  Aligned_cols=61  Identities=18%  Similarity=0.181  Sum_probs=48.7

Q ss_pred             cccccccccC-CchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCC
Q 002896          662 ELDLSHNFLG-KEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPN  724 (869)
Q Consensus       662 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~  724 (869)
                      .++.+++.++ ..+|..+  .++|+.|+|++|+|+.+.+..|..+++|+.|++++|++.|.|..
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l   73 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL   73 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence            4666666664 2555432  24689999999999999889999999999999999999998863

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.26  E-value=0.00013  Score=69.65  Aligned_cols=89  Identities=18%  Similarity=0.219  Sum_probs=51.1

Q ss_pred             ccCCcccccccccccccccc----ccccccCCCCCCeeeCcCCcCCcc----cchhhhccccccccccccc---ccCC--
Q 002896          606 LGSLIQLEYLDLSSNRLSNS----IPRSLGNLVKLHYLNLSTNQFIQE----IPIKLEKLIHLSELDLSHN---FLGK--  672 (869)
Q Consensus       606 ~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N---~l~~--  672 (869)
                      +..-+.|+.|+|++|.+...    +.+.+..-++|+.|+|++|.|...    +...+..-+.|++|+|++|   .+..  
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g  145 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  145 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence            33445556666666655432    223344556677777777776533    2233444456777777654   3332  


Q ss_pred             --chhhhhcCCCCCcEEeCCCCCC
Q 002896          673 --EIPSQICNMRSLEMLNLSHNNL  694 (869)
Q Consensus       673 --~~p~~l~~l~~L~~L~Ls~N~l  694 (869)
                        .+.+.+..-+.|+.|+++.|.+
T Consensus       146 ~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          146 EMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHhCCCcCeEeccCCCc
Confidence              2445666777888888877654

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=96.09  E-value=0.00032  Score=66.18  Aligned_cols=54  Identities=26%  Similarity=0.345  Sum_probs=46.4

Q ss_pred             ccccccCcCHHHHHHHhcCCCcccccch--hh-------------hhhhhhhhhHHHHhcc-----cccccccc
Q 002896          813 VLTFEGKIVYEEIIRQRMVLMMSTALEK--VD-------------KEVYTKLIYLLEKSLQ-----SRNFIRHS  866 (869)
Q Consensus       813 ~~~~~~~isy~~~~~a~~~~~~~~~Le~--~~-------------~~i~~~i~~~~~~s~~-----s~~fl~~~  866 (869)
                      .+.||+||||+..|++|+..++.+.||+  .|             +.|+++|.++|++|++     |++|++.+
T Consensus        33 ~~~yDvFISys~~D~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~  106 (178)
T 2j67_A           33 NVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNE  106 (178)
T ss_dssp             SCCEEEEEECCGGGHHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHT
T ss_pred             CccceEEEECCCCCHHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccc
Confidence            3689999999999999998889999998  33             5689999999999998     88988643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.92  E-value=0.0065  Score=54.07  Aligned_cols=56  Identities=18%  Similarity=0.256  Sum_probs=35.5

Q ss_pred             eeeCcCCcCC-cccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCC
Q 002896          638 YLNLSTNQFI-QEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS  695 (869)
Q Consensus       638 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  695 (869)
                      .++.+++.++ ..+|..+.  .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4556666654 24443322  24667777777776666667777777777777777775

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=95.41  E-value=0.00074  Score=61.82  Aligned_cols=52  Identities=25%  Similarity=0.340  Sum_probs=45.4

Q ss_pred             cccccCcCHHHHHHHhcCCCcccccchh--h-------------hhhhhhhhhHHHHhcc-----ccccccc
Q 002896          814 LTFEGKIVYEEIIRQRMVLMMSTALEKV--D-------------KEVYTKLIYLLEKSLQ-----SRNFIRH  865 (869)
Q Consensus       814 ~~~~~~isy~~~~~a~~~~~~~~~Le~~--~-------------~~i~~~i~~~~~~s~~-----s~~fl~~  865 (869)
                      +.||+||||+..|.+|+...+.+.||+.  |             +.+.++|.++|++|++     |++|++.
T Consensus         4 ~~yDvFiSy~~~D~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S   75 (149)
T 1fyx_A            4 IXYDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKS   75 (149)
T ss_dssp             CCEEEEEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHH
T ss_pred             ccceEEEECCcccHHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhcc
Confidence            6799999999999999987789999986  3             5688999999999998     8888764

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=95.07  E-value=0.0012  Score=60.94  Aligned_cols=51  Identities=14%  Similarity=0.270  Sum_probs=35.7

Q ss_pred             ccccCcCHHHHHHHhcCCC----------cc-cccch-hh-------------hhhhhhhhhHHHHhcc-----ccccc-
Q 002896          815 TFEGKIVYEEIIRQRMVLM----------MS-TALEK-VD-------------KEVYTKLIYLLEKSLQ-----SRNFI-  863 (869)
Q Consensus       815 ~~~~~isy~~~~~a~~~~~----------~~-~~Le~-~~-------------~~i~~~i~~~~~~s~~-----s~~fl-  863 (869)
                      .||+||||+..|.+|+..+          +. +.||+ .|             +.|+++|.++|++|++     |++|+ 
T Consensus         2 ~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~   81 (159)
T 1t3g_A            2 DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVV   81 (159)
T ss_dssp             CBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHH
T ss_pred             CceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhh
Confidence            6999999999988877643          24 45883 33             6789999999999999     99997 


Q ss_pred             cc
Q 002896          864 RH  865 (869)
Q Consensus       864 ~~  865 (869)
                      +.
T Consensus        82 ~S   83 (159)
T 1t3g_A           82 RR   83 (159)
T ss_dssp             TT
T ss_pred             cC
Confidence            54

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=94.90  E-value=0.0012  Score=61.18  Aligned_cols=52  Identities=21%  Similarity=0.242  Sum_probs=44.5

Q ss_pred             ccccccCcCHHHHHHHhcCCCcccccchhh---------------hhhhhhhhhHHH-Hhcc-----ccccccc
Q 002896          813 VLTFEGKIVYEEIIRQRMVLMMSTALEKVD---------------KEVYTKLIYLLE-KSLQ-----SRNFIRH  865 (869)
Q Consensus       813 ~~~~~~~isy~~~~~a~~~~~~~~~Le~~~---------------~~i~~~i~~~~~-~s~~-----s~~fl~~  865 (869)
                      .+.||+||||+..|++|+. .+.+.||+.+               +.|.++|.++|+ +|++     |++|++.
T Consensus        14 ~~~yDvFISys~~D~~fv~-~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S   86 (160)
T 2js7_A           14 PERFDAFICYCPSDIQFVQ-EMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQS   86 (160)
T ss_dssp             TTCEEEEEECCGGGHHHHH-HHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHS
T ss_pred             CcceEEEEEcccccHHHHH-HHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcC
Confidence            4689999999999999998 7899999842               568899999999 6998     9998864

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=94.59  E-value=0.00071  Score=61.55  Aligned_cols=52  Identities=13%  Similarity=0.085  Sum_probs=43.4

Q ss_pred             ccccccCcCHHHHHHHhcCCCcccccchh--h-------------hhhhhhhhhHHHHhcc-----ccccccc
Q 002896          813 VLTFEGKIVYEEIIRQRMVLMMSTALEKV--D-------------KEVYTKLIYLLEKSLQ-----SRNFIRH  865 (869)
Q Consensus       813 ~~~~~~~isy~~~~~a~~~~~~~~~Le~~--~-------------~~i~~~i~~~~~~s~~-----s~~fl~~  865 (869)
                      .+.||+||||+..|+.|+. .+.+.||+.  +             +.|.++|.++|++|++     |++|++.
T Consensus         8 ~k~YDvFISy~~~D~~~v~-~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S   79 (146)
T 3ub2_A            8 SKDYDVCVCHSEEDLVAAQ-DLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQD   79 (146)
T ss_dssp             SSSEEEEEECCGGGHHHHH-HHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHC
T ss_pred             CCcceEEEeCChhhHHHHH-HHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccC
Confidence            3689999999999999985 899999984  3             5688899999999998     8888864

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=82.93  E-value=0.13  Score=48.68  Aligned_cols=53  Identities=13%  Similarity=0.218  Sum_probs=39.4

Q ss_pred             ccccccCcCHHHHHHHh-cCCCcccccchhh-------------hhhhhhhhhHHHHhcc-----ccccccc
Q 002896          813 VLTFEGKIVYEEIIRQR-MVLMMSTALEKVD-------------KEVYTKLIYLLEKSLQ-----SRNFIRH  865 (869)
Q Consensus       813 ~~~~~~~isy~~~~~a~-~~~~~~~~Le~~~-------------~~i~~~i~~~~~~s~~-----s~~fl~~  865 (869)
                      .+.||+||||+..|..+ ..-++.++|+..|             +.|..+|..+||+|+.     |++|+..
T Consensus        33 ~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S  104 (204)
T 3ozi_A           33 SVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADS  104 (204)
T ss_dssp             -CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGC
T ss_pred             CcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccC
Confidence            47899999998777422 1224666776665             5688899999999998     8888764

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=80.26  E-value=1.9  Score=29.27  Aligned_cols=7  Identities=29%  Similarity=0.548  Sum_probs=2.7

Q ss_pred             ehHHHHH
Q 002896          769 IVFPLLG  775 (869)
Q Consensus       769 i~~~~~~  775 (869)
                      |+.++++
T Consensus        13 IA~gVVg   19 (44)
T 2ks1_B           13 IATGMVG   19 (44)
T ss_dssp             STHHHHH
T ss_pred             EEeehhH
Confidence            3344433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	869
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-25
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-22
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-22
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-22
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-21
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-21
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-15
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-11
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-11
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-09
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-08
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	8e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	5e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-06
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	4e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	7e-04

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score =  104 bits (258), Expect = 7e-25
 Identities = 82/310 (26%), Positives = 122/310 (39%), Gaps = 36/310 (11%)

Query: 36  EEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCN---HVGRVNSINLTNV 92
           ++  ALL+ K  L N    + L SW     T      W G+ C+      RVN+++L+  
Sbjct: 6   QDKQALLQIKKDLGNP---TTLSSW--LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG- 59

Query: 93  NQIFGI--IPPQIGNISKLKYLDLSSN-SFSGTIPPQIGNLSMLKFLYLSANQFSGRIPP 149
             +     IP  + N+  L +L +    +  G IPP I  L+ L +LY++    SG IP 
Sbjct: 60  LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119

Query: 150 QIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAI-L 208
            +  +  +  L    N LSG +P  +  L +L  +    N + G+IP S G+ + L   +
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179

Query: 209 YLHNNSLSGSIPSEIGNLKSLSSLALGNNKL----------------------CGSIPLF 246
            +  N L+G IP    NL         N                                
Sbjct: 180 TISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239

Query: 247 LGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYL 306
           +G   NL+ L LRNN    ++P  +  LK L  L +  N L G IP   GNL   D    
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAY 298

Query: 307 YTNSLSGSIP 316
             N      P
Sbjct: 299 ANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 86.7 bits (213), Expect = 5e-19
 Identities = 74/263 (28%), Positives = 108/263 (41%), Gaps = 27/263 (10%)

Query: 176 GGLSSLNELALTSNFLKG--SIPPSLGNLTNLAILYLHNN-SLSGSIPSEIGNLKSLSSL 232
                +N L L+   L     IP SL NL  L  LY+    +L G IP  I  L  L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 233 ALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP 292
            + +  + G+IP FL  +  L TL    N+ S ++P  I +L +L  +    NR++G+IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 293 LSLGNLTNLDTLYLYT-NSLSGSIPSEIGNLKSLSGLELAD------------------- 332
            S G+ + L T    + N L+G IP    NL         +                   
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 333 ---NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPH 389
                  +     +G   NL    L  N + G++P  +  LK L +L++S N L G IP 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP- 285

Query: 390 SLGNLTNLAILYLHSNTLLGSIP 412
             GNL    +    +N  L   P
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 84.4 bits (207), Expect = 3e-18
 Identities = 71/290 (24%), Positives = 109/290 (37%), Gaps = 26/290 (8%)

Query: 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFEL 424
                   ++NLDLS   L    P                      IP  + NL  L  L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYP----------------------IPSSLANLPYLNFL 81

Query: 425 QLGDN-KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSI 483
            +G    L   I  ++  LT +  L +    +SG IP+ L  +  L  L  S N L G++
Sbjct: 82  YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 484 PN-LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGT 542
           P  + +L NL+ +  + N ++  I +S+G   KL        N             NL  
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF 201

Query: 543 FDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQL 602
            D+S N + G      G       I L+ N +   +       +      LR N+++G L
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD-LRNNRIYGTL 260

Query: 603 PSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPI 652
           P  L  L  L  L++S N L   IP   GNL +      + N+ +   P+
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 83.6 bits (205), Expect = 5e-18
 Identities = 64/292 (21%), Positives = 96/292 (32%), Gaps = 29/292 (9%)

Query: 457 GVIPEELGNLVKLTMLTLSDNQLQGSIP---NLRNLTNLIRLRLNRNH-LTCNISESFGI 512
           GV+ +      ++  L LS   L    P   +L NL  L  L +   + L   I  +   
Sbjct: 40  GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99

Query: 513 HPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSAN 572
             +L ++ ++H N  G I     +   L T D S N + G+LPP I     L  I    N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 573 HIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGN 632
            I G IP   G  S L   +               +          S  +       L  
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NLNLAFVDLSRNMLEGDASVLFG 218

Query: 633 LVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHN 692
             K           +     K+    +L+ LDL +N +   +P  +  ++ L  LN+S N
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 693 NLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCG 744
           NL                         G IP         + A   N+ LCG
Sbjct: 279 NL------------------------CGEIPQGGNLQRFDVSAYANNKCLCG 306

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 82.9 bits (203), Expect = 1e-17
 Identities = 70/261 (26%), Positives = 110/261 (42%), Gaps = 6/261 (2%)

Query: 248 GNLTNLDTLYLRNNSFSS--SIPSEIGNLKSLSILELGEN-RLNGSIPLSLGNLTNLDTL 304
                ++ L L   +      IPS + NL  L+ L +G    L G IP ++  LT L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 305 YLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIP 364
           Y+   ++SG+IP  +  +K+L  L+ + N LS ++P  + +L NL       N +SG+IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 365 SEIGNLKSLSN-LDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFE 423
              G+   L   + +S N+L+G IP +  NL         S  +L      +       +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL--AFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 424 LQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSI 483
                          +G   ++  L L +N + G +P+ L  L  L  L +S N L G I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 484 PNLRNLTNLIRLRLNRNHLTC 504
           P   NL          N   C
Sbjct: 285 PQGGNLQRFDVSAYANNKCLC 305

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 75.9 bits (185), Expect = 2e-15
 Identities = 66/268 (24%), Positives = 100/268 (37%), Gaps = 6/268 (2%)

Query: 416 GNLKSLFELQLGDNKLSN--SISHSLGNLTHMTLLALYDNA-LSGVIPEELGNLVKLTML 472
                +  L L    L     I  SL NL ++  L +     L G IP  +  L +L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 473 TLSDNQLQGSIPNLRNLTN-LIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS 531
            ++   + G+IP+  +    L+ L  + N L+  +  S    P L  I    N   G I 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 532 SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKL 591
             +G    L T      N +    P    +  L  +DLS N + G      G   +  + 
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN-TQK 225

Query: 592 ILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIP 651
           I            ++G    L  LDL +NR+  ++P+ L  L  LH LN+S N    EIP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 652 IKLEKLIHLSELDLSHNFLGKEIPSQIC 679
            +   L        ++N      P   C
Sbjct: 286 -QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 69.8 bits (169), Expect = 2e-13
 Identities = 68/267 (25%), Positives = 111/267 (41%), Gaps = 5/267 (1%)

Query: 221 SEIGNLKSLSSLALGNNKLCG--SIPLFLGNLTNLDTLYLRNN-SFSSSIPSEIGNLKSL 277
                   +++L L    L     IP  L NL  L+ LY+    +    IP  I  L  L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 278 SILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS 337
             L +    ++G+IP  L  +  L TL    N+LSG++P  I +L +L G+    N +S 
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 338 SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNL 397
           +IP   G+ + L        +             +L+ +DLS N L G      G+  N 
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN- 222

Query: 398 AILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSG 457
                 +   L     ++G  K+L  L L +N++  ++   L  L  +  L +  N L G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 458 VIPEELGNLVKLTMLTLSDNQLQGSIP 484
            IP+  GNL +  +   ++N+     P
Sbjct: 283 EIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.6 bits (140), Expect = 1e-09
 Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 3/105 (2%)

Query: 71  CAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNL 130
                         N+  +            ++G    L  LDL +N   GT+P  +  L
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267

Query: 131 SMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQL--SGPIPH 173
             L  L +S N   G I PQ G+L   +      N+     P+P 
Sbjct: 268 KFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSPLPA 311

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 96.3 bits (238), Expect = 3e-22
 Identities = 55/288 (19%), Positives = 101/288 (35%), Gaps = 14/288 (4%)

Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSL 421
            +P ++      + LDL  NK++        NL NL  L L +N +    P     L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 422 FELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQG 481
             L L  N+L             +  L +++N ++ V       L ++ ++ L  N L+ 
Sbjct: 82  ERLYLSKNQLKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 138

Query: 482 SIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLG 541
           S         + +L   R   T   +   G+ P LT + L  N      ++      NL 
Sbjct: 139 SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 542 TFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFG- 600
              +S N+I       + ++  L  + L+ N+ + K+P  +     +  + L  N +   
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLN-NNKLVKVPGGLADHKYIQVVYLHNNNISAI 257

Query: 601 -----QLPSELGSLIQLEYLDLSSNRLSNS--IPRSLGNLVKLHYLNL 641
                  P           + L SN +      P +   +     + L
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 95.1 bits (235), Expect = 7e-22
 Identities = 62/269 (23%), Positives = 110/269 (40%), Gaps = 13/269 (4%)

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 253
            +P  L    + A+L L NN ++     +  NLK+L +L L NNK+    P     L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 254 DTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG 313
           + LYL  N            L+ L + E    ++  S+   L  +  ++ L       SG
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSG 140

Query: 314 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 373
                   +K LS + +AD  +++       +LT L   +L  N ++    + +  L +L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNL 197

Query: 374 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 433
           + L LS N +S     SL N  +L  L+  +N  L  +P  + + K +  + L +N +S 
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELH-LNNNKLVKVPGGLADHKYIQVVYLHNNNISA 256

Query: 434 ------SISHSLGNLTHMTLLALYDNALS 456
                             + ++L+ N + 
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.3 bits (225), Expect = 1e-20
 Identities = 56/289 (19%), Positives = 104/289 (35%), Gaps = 15/289 (5%)

Query: 146 RIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNL 205
           ++P  +        L L  N+++     +   L +L+ L L +N +    P +   L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 206 AILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS 265
             LYL  N L          L+ L        K+  S+   L  +  ++ L       S 
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSG 140

Query: 266 SIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSL 325
                   +K LS + + +  +     +  G   +L  L+L  N ++    + +  L +L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 326 SGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSG 385
           + L L+ N +S+     L N  +L   +L  N L   +P  + + K +  + L  N +S 
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256

Query: 386 ------SIPHSLGNLTNLAILYLHSN--TLLGSIPREIGNLKSLFELQL 426
                   P       + + + L SN        P     +     +QL
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 90.9 bits (224), Expect = 2e-20
 Identities = 61/288 (21%), Positives = 106/288 (36%), Gaps = 15/288 (5%)

Query: 99  IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIE 158
           +P  +        LDL +N  +        NL  L  L L  N+ S   P     L  +E
Sbjct: 25  VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 159 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGS 218
            L+L KNQL          L  L         ++ S+   L  +  +  L  +    SG 
Sbjct: 83  RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGI 141

Query: 219 IPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLS 278
                  +K LS + + +  +     +  G   +L  L+L  N  +    + +  L +L+
Sbjct: 142 ENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 279 ILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS- 337
            L L  N ++     SL N  +L  L+L  N L   +P  + + K +  + L +N +S+ 
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 257

Query: 338 -----SIPHYLGNLTNLAAFYLYKNSLSGS--IPSEIGNLKSLSNLDL 378
                  P Y     + +   L+ N +      PS    +   + + L
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.5 bits (184), Expect = 2e-15
 Identities = 42/236 (17%), Positives = 86/236 (36%), Gaps = 5/236 (2%)

Query: 490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 549
            +   L L  N +T      F     L  + L +N         +     L    +S  N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS-KN 89

Query: 550 IIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSL 609
            +  LP ++  + Q   +  +    + K          +++L     +  G        +
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 610 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNF 669
            +L Y+ ++   ++ +IP+ L     L  L+L  N+  +     L+ L +L++L LS N 
Sbjct: 150 KKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 670 LGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 725
           +       + N   L  L+L++N L   +P    +   +  + +  N +     N 
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSND 261

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.3 bits (168), Expect = 3e-13
 Identities = 43/215 (20%), Positives = 77/215 (35%), Gaps = 4/215 (1%)

Query: 538 PNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQ 597
           P+    D+  N I      +  +   LH + L  N I    P     L  L +L L +NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 598 LFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKL 657
           L         +L +L   +    ++  S+   L N + +  L  +  +         + +
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 658 IHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNE 717
             LS + ++   +   IP  +    SL  L+L  N ++       + +N L  + +S+N 
Sbjct: 150 KKLSYIRIADTNI-TTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 718 LHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSC 752
           +      S A +  L E    N  L     G    
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 241

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.7 bits (138), Expect = 2e-09
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 28/199 (14%)

Query: 577 KIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKL 636
           K+P ++        L L+ N++      +  +L  L  L L +N++S   P +   LVKL
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 637 HYLNLSTNQF-----------------------IQEIPIKLEKLIHLSELDLSHNFLGKE 673
             L LS NQ                        +++        + + EL  +       
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 674 IPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALM 733
                  M+ L  + ++  N++            L  + +  N++      S    + L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLA 198

Query: 734 EALQGNEGLCGDIKGFQSC 752
           +       +     G  + 
Sbjct: 199 KLGLSFNSISAVDNGSLAN 217

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 9e-07
 Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 3/158 (1%)

Query: 611 QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFL 670
            L  +  S   L   +P+ L        L+L  N+  +      + L +L  L L +N +
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPPDTA--LLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 671 GKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSD 730
            K  P     +  LE L LS N L +   +  + +  L   +    ++   + N      
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 731 ALMEALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVV 768
            +       +    +   FQ  K     + A   I  +
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 165

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 24/144 (16%), Positives = 43/144 (29%)

Query: 659 HLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
             + LDL +N + +       N+++L  L L +N +S   P  F  +  L  + +S N+L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 719 HGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVVIVFPLLGTVA 778
                        L         +   +    +            K   +      G   
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 779 LLISLIALFFIFRRRKNALQTLQS 802
           L    IA   I    +    +L  
Sbjct: 152 LSYIRIADTNITTIPQGLPPSLTE 175

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 97.4 bits (241), Expect = 3e-22
 Identities = 79/386 (20%), Positives = 146/386 (37%), Gaps = 36/386 (9%)

Query: 273 NLKSLSILELGENRLNGSIPLS-LGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELA 331
            L       LG+  +  ++  + L  +T L    L   S+ G     +  L +L+ +  +
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74

Query: 332 DNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPH-- 389
           +N+L+   P  L NLT L    +  N ++   P       +   L  ++      + +  
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 390 ----------SLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLS-NSISHS 438
                     ++ +++ L+ L        G+   ++  L +L  L+  D   +  S    
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 439 LGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLN 498
           L  LT++  L   +N +S + P  +     L  L+L+ NQL+  I  L +LTNL  L L 
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD-IGTLASLTNLTDLDLA 249

Query: 499 RNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEI 558
            N ++           KLT + L  N                   + +           I
Sbjct: 250 NNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED----ISPI 303

Query: 559 GDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLS 618
            +   L  + L  N+I    P  +  L+ L +L    N++     S L +L  + +L   
Sbjct: 304 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 619 SNRLSNSIPRSLGNLVKLHYLNLSTN 644
            N++S+  P  L NL ++  L L+  
Sbjct: 360 HNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 94.3 bits (233), Expect = 3e-21
 Identities = 95/342 (27%), Positives = 145/342 (42%), Gaps = 35/342 (10%)

Query: 103 IGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHL 162
           +  ++ L  ++ S+N  +   P  + NL+ L  + ++ NQ +   P           L  
Sbjct: 62  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 119

Query: 163 FKNQLSGPIP---------------HEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAI 207
            +     P+                 ++  LS L  L   S   + +    L NLT L  
Sbjct: 120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 179

Query: 208 LYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSI 267
           L + +N    S  S +  L +L SL   NN++    PL    LTNLD L L  N      
Sbjct: 180 LDISSN--KVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD-- 233

Query: 268 PSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSG 327
              + +L +L+ L+L  N+++   PLS   LT L  L L  N +S   P  +  L +L+ 
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTN 289

Query: 328 LELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSI 387
           LEL +N+L    P    NL NL    LY N++S   P  + +L  L  L  + NK+S   
Sbjct: 290 LELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-- 343

Query: 388 PHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDN 429
             SL NLTN+  L    N +    P  + NL  + +L L D 
Sbjct: 344 VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 92.0 bits (227), Expect = 2e-20
 Identities = 95/381 (24%), Positives = 158/381 (41%), Gaps = 38/381 (9%)

Query: 159 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGS 218
              L K  ++  +      L  +  L      +K SI   +  L NL  +   NN L+  
Sbjct: 26  KTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDI 81

Query: 219 IPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSE-------- 270
            P  + NL  L  + + NN++    PL         TL+    +    + +         
Sbjct: 82  TP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139

Query: 271 -------IGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLK 323
                  I  L  L+ L+        +    L NLT L+ L + +N    S  S +  L 
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK--VSDISVLAKLT 197

Query: 324 SLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKL 383
           +L  L   +N++S   P     LTNL    L  N L       + +L +L++LDL+ N++
Sbjct: 198 NLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQI 253

Query: 384 SGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLT 443
           S   P  L  LT L  L L +N +    P  +  L +L  L+L +N+L +    S  NL 
Sbjct: 254 SNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLK 307

Query: 444 HMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLT 503
           ++T L LY N +S + P  + +L KL  L  ++N++   + +L NLTN+  L    N ++
Sbjct: 308 NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQIS 364

Query: 504 CNISESFGIHPKLTFIDLSHN 524
                      ++T + L+  
Sbjct: 365 DLT--PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 92.0 bits (227), Expect = 2e-20
 Identities = 72/392 (18%), Positives = 133/392 (33%), Gaps = 48/392 (12%)

Query: 345 NLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHS 404
            L       L K +++ ++     +L  ++ L      +  SI   +  L NL  +   +
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSN 75

Query: 405 NTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELG 464
           N L    P  + NL  L ++ + +N++++    +         L          +     
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN--- 130

Query: 465 NLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHN 524
                            +I ++  L+ L  L+           +       L  +D+S N
Sbjct: 131 -----LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 185

Query: 525 NFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGK 584
                      K  NL +   + N I    P  I   + L  + L+ N +       +  
Sbjct: 186 KVSDIS--VLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLAS 239

Query: 585 LSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIP----------------- 627
           L++L  L L  NQ+    P  L  L +L  L L +N++SN  P                 
Sbjct: 240 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 297

Query: 628 ---RSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSL 684
                + NL  L YL L  N      P+    L  L  L  ++N +     S + N+ ++
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFANNKV--SDVSSLANLTNI 353

Query: 685 EMLNLSHNNLSDFIPRCFEEMNGLLYIDISYN 716
             L+  HN +SD  P     +  +  + ++  
Sbjct: 354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.5 bits (218), Expect = 3e-19
 Identities = 89/368 (24%), Positives = 150/368 (40%), Gaps = 33/368 (8%)

Query: 100 PPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEA 159
                ++ ++  L              +  L+ L  +  S NQ +   P  + +L+ +  
Sbjct: 37  TVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 92

Query: 160 LHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPP------------SLGNLTNLAI 207
           + +  NQ++   P       +   L          +              ++ +++ L+ 
Sbjct: 93  ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG 152

Query: 208 LYLHNNSLSGSIPSEIGNLKSLSSLAL-GNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSS 266
           L        G+  +++  L +L++L     +    S    L  LTNL++L   NN  S  
Sbjct: 153 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI 212

Query: 267 IPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLS 326
            P  I    +L  L L  N+L      +L +LTNL  L L  N +S   P  +  L  L+
Sbjct: 213 TPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 266

Query: 327 GLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGS 386
            L+L  N++S+  P     LT L    L +N       S I NLK+L+ L L  N +S  
Sbjct: 267 ELKLGANQISNISPLA--GLTALTNLELNEN--QLEDISPISNLKNLTYLTLYFNNISDI 322

Query: 387 IPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMT 446
            P  + +LT L  L+  +N +  S    + NL ++  L  G N++S+     L NLT +T
Sbjct: 323 SP--VSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLT--PLANLTRIT 376

Query: 447 LLALYDNA 454
            L L D A
Sbjct: 377 QLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 86.2 bits (212), Expect = 2e-18
 Identities = 89/397 (22%), Positives = 151/397 (38%), Gaps = 34/397 (8%)

Query: 201 NLTNLAILYLHNNSLSGSIP-SEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLR 259
            L       L   +++ ++  +++  + +L +  LG   + G     +  L NL  +   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74

Query: 260 NNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI 319
           NN  +   P  + NL  L  + +  N++    PL+        TL+    +    + +  
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 320 GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLS 379
                         ELSS+    +  L+ L +          +    + NL +L  LD+S
Sbjct: 133 NL---------NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 183

Query: 380 ENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSL 439
            NK+S     +   LTNL  L   +N +    P  I    +L EL L  N+L +    +L
Sbjct: 184 SNKVSDISVLA--KLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTL 237

Query: 440 GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNR 499
            +LT++T L L +N +S + P  L  L KLT L L  NQ+   I  L  LT L  L LN 
Sbjct: 238 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNE 294

Query: 500 NHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIG 559
           N               LT++ L  NN              L     + N +       + 
Sbjct: 295 NQ--LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLA 348

Query: 560 DSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRN 596
           + + ++ +    N I    P  +  L+ + +L L   
Sbjct: 349 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 85.1 bits (209), Expect = 4e-18
 Identities = 89/397 (22%), Positives = 153/397 (38%), Gaps = 34/397 (8%)

Query: 105 NISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFK 164
            +++     L   + + T+     +L  +  L              + +L+ +  ++   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75

Query: 165 NQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIG 224
           NQL+   P  +  L+ L ++ + +N +    P +         L+ +  +    + +   
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT- 132

Query: 225 NLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGE 284
                      N          + +++ L  L         +  +++  L +L+ LE  +
Sbjct: 133 -----------NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 181

Query: 285 NRLN-GSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYL 343
              N  S    L  LTNL++L    N +S   P  I    +L  L L  N+L       L
Sbjct: 182 ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTL 237

Query: 344 GNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
            +LTNL    L  N +S   P  +  L  L+ L L  N++S   P  L  LT L  L L+
Sbjct: 238 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 293

Query: 404 SNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEEL 463
            N         I NLK+L  L L  N +S+     + +LT +  L   +N +S      L
Sbjct: 294 ENQ--LEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD--VSSL 347

Query: 464 GNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRN 500
            NL  +  L+   NQ+    P L NLT + +L LN  
Sbjct: 348 ANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.1 bits (191), Expect = 7e-16
 Identities = 71/364 (19%), Positives = 127/364 (34%), Gaps = 72/364 (19%)

Query: 417 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 476
            L    +  LG   +++++S +  +L  +T L      +  +  + +  L  LT +  S+
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 75

Query: 477 NQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKL-------------------T 517
           NQL    P L+NLT L+ + +N N +      +   +                       
Sbjct: 76  NQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 518 FIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSL------------------PPEIG 559
                 +N    IS+  G          +    +  L                     + 
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 560 DSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSS 619
             + L  +  + N I    P  I   ++L +L L  NQL       L SL  L  LDL++
Sbjct: 195 KLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 250

Query: 620 NRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPI--------------------KLEKLIH 659
           N++SN  P  L  L KL  L L  NQ     P+                     +  L +
Sbjct: 251 NQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN 308

Query: 660 LSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719
           L+ L L  N +    P  + ++  L+ L  ++N +SD        +  + ++   +N++ 
Sbjct: 309 LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQIS 364

Query: 720 GPIP 723
              P
Sbjct: 365 DLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.8 bits (146), Expect = 3e-10
 Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 6/146 (4%)

Query: 44  WKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQI 103
               L N+   +L P   L   T++   A    + + +  + ++    +N+        I
Sbjct: 244 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 303

Query: 104 GNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLF 163
            N+  L YL L  N+ S   P  + +L+ L+ L+ + N+ S      + +L+ I  L   
Sbjct: 304 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 164 KNQLSGPIPHEVGGLSSLNELALTSN 189
            NQ+S   P  +  L+ + +L L   
Sbjct: 360 HNQISDLTP--LANLTRITQLGLNDQ 383

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.2 bits (227), Expect = 5e-21
 Identities = 67/275 (24%), Positives = 108/275 (39%), Gaps = 7/275 (2%)

Query: 255 TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGS 314
           T         + +P  I    +   + L  NR++     S     NL  L+L++N L+  
Sbjct: 15  TTSCPQQGLQA-VPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 315 IPSEIGNLKSLSGLELADNELSSSI-PHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 373
             +    L  L  L+L+DN    S+ P     L  L   +L +  L    P     L +L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 374 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 433
             L L +N L      +  +L NL  L+LH N +     R    L SL  L L  N++++
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 434 SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLI 493
              H+  +L  +  L L+ N LS +  E L  L  L  L L+DN              L 
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 251

Query: 494 RLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG 528
           + R + + + C++ +            L+ N+  G
Sbjct: 252 KFRGSSSEVPCSLPQRLA---GRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (200), Expect = 1e-17
 Identities = 65/252 (25%), Positives = 95/252 (37%), Gaps = 6/252 (2%)

Query: 86  SINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSG 145
            I L   N+I  +          L  L L SN  +         L++L+ L LS N    
Sbjct: 36  RIFLHG-NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94

Query: 146 RIPP-QIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTN 204
            + P     L  +  LHL +  L    P    GL++L  L L  N L+     +  +L N
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154

Query: 205 LAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFS 264
           L  L+LH N +S         L SL  L L  N++    P    +L  L TLYL  N+ S
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

Query: 265 SSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKS 324
           +     +  L++L  L L +N               L      ++ +  S+P     L  
Sbjct: 215 ALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ---RLAG 270

Query: 325 LSGLELADNELS 336
                LA N+L 
Sbjct: 271 RDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (199), Expect = 2e-17
 Identities = 64/256 (25%), Positives = 99/256 (38%), Gaps = 5/256 (1%)

Query: 179 SSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNK 238
           ++   + L  N +      S     NL IL+LH+N L+    +    L  L  L L +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 239 LCGSI-PLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGN 297
              S+ P     L  L TL+L         P     L +L  L L +N L      +  +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 298 LTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKN 357
           L NL  L+L+ N +S         L SL  L L  N ++   PH   +L  L   YL+ N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 358 SLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGN 417
           +LS      +  L++L  L L++N        +      L      S+ +  S+P+ +  
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLAG 270

Query: 418 LKSLFELQLGDNKLSN 433
                  +L  N L  
Sbjct: 271 RDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (194), Expect = 9e-17
 Identities = 55/241 (22%), Positives = 86/241 (35%), Gaps = 10/241 (4%)

Query: 490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 549
               R+ L+ N ++   + SF     LT + L  N      ++ +     L   D+S N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 550 IIGSLPP-EIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGS 608
            + S+ P       +LH + L    +    P     L++L  L L+ N L          
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 609 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHN 668
           L  L +L L  NR+S+   R+   L  L  L L  N+     P     L  L  L L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 669 FLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLL----YIDISYNELHGPIPN 724
            L       +  +R+L+ L L+ N        C      L         S +E+   +P 
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPW-----VCDCRARPLWAWLQKFRGSSSEVPCSLPQ 266

Query: 725 S 725
            
Sbjct: 267 R 267

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 4e-15
 Identities = 48/233 (20%), Positives = 79/233 (33%), Gaps = 4/233 (1%)

Query: 57  LPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSS 116
             + T+                  +  +  ++L++  Q+  + P     + +L  L L  
Sbjct: 55  CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 117 NSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVG 176
                  P     L+ L++LYL  N            L  +  L L  N++S        
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174

Query: 177 GLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN 236
           GL SL+ L L  N +    P +  +L  L  LYL  N+LS      +  L++L  L L +
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

Query: 237 NKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNG 289
           N               L      ++    S+P     L    +  L  N L G
Sbjct: 235 NPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 64.8 bits (156), Expect = 1e-11
 Identities = 65/330 (19%), Positives = 109/330 (33%), Gaps = 26/330 (7%)

Query: 371 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNK 430
           +    L+L+   LS S+P    +L +L      S   L  +P    +LKSL         
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLESLVA----SCNSLTELPELPQSLKSLLVDNNNLKA 92

Query: 431 LSNSIS----HSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNL 486
           LS+         + N     L  L +++   +I  +  +L KL  L  S   +      L
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 487 RNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVS 546
             L  L  L         N S        L+   +   N   +   +    P L T    
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 547 VNNIIGSLPPE--------IGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL 598
            N +                 +          +   +    +    LS L   +   N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 599 FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLI 658
             ++ S       LE L++S+N+L   +P        L  L  S N  + E+P   E   
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNH-LAEVP---ELPQ 324

Query: 659 HLSELDLSHNFLGKEIPSQICNMRSLEMLN 688
           +L +L + +N L +E P    ++  L M +
Sbjct: 325 NLKQLHVEYNPL-REFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.8 bits (130), Expect = 2e-08
 Identities = 59/325 (18%), Positives = 100/325 (30%), Gaps = 27/325 (8%)

Query: 323 KSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENK 382
           +    LEL +  LSS +P    +L +L       NSL+  +P    +LKSL   + +   
Sbjct: 38  RQAHELELNNLGLSS-LPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 383 LSGSIPH-SLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN 441
           LS   P      ++N  +  L        +     +  SL +L      L    + +   
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNH 501
                L  L            L  L  L +   S       +  L  L NL  L      
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 502 LTCNISESFGIHPKLTFIDL-----------SHNNFYGQISSDWGKCPNLGTFDVSVNNI 550
                +                             F     + +     L      +N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 551 IGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLI 610
              +         L  +++S N +I ++P+   +L    +LI   N L  ++P    +  
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHL-AEVPELPQN-- 325

Query: 611 QLEYLDLSSNRLSN--SIPRSLGNL 633
            L+ L +  N L     IP S+ +L
Sbjct: 326 -LKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.7 bits (127), Expect = 4e-08
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 161 HLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIP 220
             + N  S  I        SL EL +++N L   +P     L     L    N L+  +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVP 320

Query: 221 SEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 253
               NLK L    +  N L    P    ++ +L
Sbjct: 321 ELPQNLKQLH---VEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 9/93 (9%)

Query: 305 YLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIP 364
             Y N+ S  I S      SL  L +++N+L   +P     L  L       N L+  +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERL---IASFNHLA-EVP 320

Query: 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNL 397
               NLK    L +  N L    P    ++ +L
Sbjct: 321 ELPQNLKQ---LHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.1 bits (123), Expect = 1e-07
 Identities = 51/315 (16%), Positives = 90/315 (28%), Gaps = 25/315 (7%)

Query: 395 TNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNA 454
                L L +N  L S+P    +L+S   L    N L+  +     +L  + +      A
Sbjct: 38  RQAHELEL-NNLGLSSLPELPPHLES---LVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 455 L------------SGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHL 502
           L            S    E+L  L   + L + D              +L  +    N L
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 503 TCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSS 562
                          + D +       +                +  +          + 
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 563 QLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRL 622
              +  L       +  +      + +  + +         +    L +L       N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 623 SNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMR 682
           SN I         L  LN+S N+ + E+P        L  L  S N L  E+P    N  
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNK-LIELP---ALPPRLERLIASFNHL-AEVPELPQN-- 325

Query: 683 SLEMLNLSHNNLSDF 697
            L+ L++ +N L +F
Sbjct: 326 -LKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 209 YLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIP 268
             + N+ S  I S      SL  L + NNKL   +P     L  L       N  +  +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLAE-VP 320

Query: 269 SEIGNLKSLSILELGENRLNGSIPLSLGNLTNL 301
               NLK L    +  N L    P    ++ +L
Sbjct: 321 ELPQNLKQLH---VEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 6e-07
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 9/96 (9%)

Query: 352 FYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSI 411
              Y N+ S  I S      SL  L++S NKL   +P     L  L      S   L  +
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIA----SFNHLAEV 319

Query: 412 PREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTL 447
           P    NLK   +L +  N L         ++  + +
Sbjct: 320 PELPQNLK---QLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 257 YLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIP 316
               N+ S+ I S      SL  L +  N+L   +P     L  L       N L+  +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLA-EVP 320

Query: 317 SEIGNLKSLSGLELADNELSSSIPHYLGNLTNL 349
               NLK L    +  N L    P    ++ +L
Sbjct: 321 ELPQNLKQLH---VEYNPL-REFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 3e-06
 Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 9/113 (7%)

Query: 70  PCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGN 129
                  +          NL  +N     I         L+ L++S+N     +P     
Sbjct: 247 TFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR 305

Query: 130 LSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLN 182
              L+ L  S N  +  +P    +L     LH+  N L    P     +  L 
Sbjct: 306 ---LERLIASFNHLA-EVPELPQNLKQ---LHVEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 7e-05
 Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 9/136 (6%)

Query: 70  PCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGN 129
           P +   ++       +   L        +       +S+L       N+ S  I      
Sbjct: 223 PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL 282

Query: 130 LSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSN 189
              L+ L +S N+    +P     L     L    N L+  +P     L  L+   +  N
Sbjct: 283 PPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLAE-VPELPQNLKQLH---VEYN 334

Query: 190 FLKGSIPPSLGNLTNL 205
            L+   P    ++ +L
Sbjct: 335 PLR-EFPDIPESVEDL 349

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.7 bits (151), Expect = 1e-11
 Identities = 37/219 (16%), Positives = 74/219 (33%), Gaps = 22/219 (10%)

Query: 441 NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRN 500
            L +   +A   + ++  + +   +L  +T L+     +  +I  ++ L NLI L L  N
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDN 73

Query: 501 HLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPN--------------LGTFDVS 546
            +T               +  +       I+                        +    
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 547 VNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL 606
           +   +  +      +   ++  LS  +      + +  LS L  L    N++     S L
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPL 191

Query: 607 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQ 645
            SL  L  + L +N++S+  P  L N   L  + L+ NQ
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.3 bits (116), Expect = 5e-07
 Identities = 40/216 (18%), Positives = 76/216 (35%), Gaps = 22/216 (10%)

Query: 201 NLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRN 260
            L N   +    ++++ ++     +L  +++L+     +  +I   +  L NL  L L++
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKD 72

Query: 261 NSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIG 320
           N  +   P +     +   L     +   +I       T   T    T+    +  S + 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 321 NLKSLSGLELADNEL--------------SSSIPHYLGNLTNLAAFYLYKNSLSGSIPSE 366
            L          + L                S    L NL+ L       N +S   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 367 IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYL 402
           + +L +L  + L  N++S   P  L N +NL I+ L
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.3 bits (116), Expect = 6e-07
 Identities = 40/226 (17%), Positives = 77/226 (34%), Gaps = 17/226 (7%)

Query: 273 NLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELAD 332
            L +   +  G++ +  ++  +  +L  + TL  +   ++      +  L +L GLEL D
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 333 NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLG 392
           N+++   P                     +I                 +    +   +L 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 393 NLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYD 452
            L        + + L G    +  +                S    L NL+ +T L   D
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLS----------IGNAQVSDLTPLANLSKLTTLKADD 182

Query: 453 NALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLN 498
           N +S + P  L +L  L  + L +NQ+   +  L N +NL  + L 
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 3e-06
 Identities = 39/218 (17%), Positives = 72/218 (33%), Gaps = 22/218 (10%)

Query: 225 NLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGE 284
            L +   +A G + +  ++     +L  + TL       ++     +  L +L  LEL +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 285 NRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLG 344
           N++    PL          L         +I                 +    +    L 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 345 NLTNLAAFYLYKNSL--------------SGSIPSEIGNLKSLSNLDLSENKLSGSIPHS 390
            L          + L                S  + + NL  L+ L   +NK+S   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 391 LGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGD 428
           L +L NL  ++L +N +    P  + N  +LF + L +
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 35/226 (15%), Positives = 68/226 (30%), Gaps = 17/226 (7%)

Query: 345 NLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHS 404
            L N       K++++ ++     +L  ++ L      ++ +I   +  L NL  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKD 72

Query: 405 NTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELG 464
           N +    P +     +  EL     K  ++I+      T         +         L 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 465 NLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHN 524
            L        + + L G                +  +   +         KLT +    N
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYL---------SIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 525 NFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLS 570
                  S     PNL    +  N I       + ++S L ++ L+
Sbjct: 184 KISD--ISPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 253
           S    L NL+ L  L   +N +S   P  + +L +L  + L NN++    PL   N +NL
Sbjct: 164 SDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPL--ANTSNL 219

Query: 254 DTLYLRN 260
             + L N
Sbjct: 220 FIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 9e-05
 Identities = 34/204 (16%), Positives = 66/204 (32%), Gaps = 22/204 (10%)

Query: 93  NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIG 152
           + +   +     ++  +  L       +      +  L+ L  L L  NQ +   P +  
Sbjct: 29  SNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAPLKNL 84

Query: 153 HLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN 212
                  L     +    I       +        ++    +   +L  L        + 
Sbjct: 85  TKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI 144

Query: 213 NSL--------------SGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYL 258
           + L                S  + + NL  L++L   +NK+    PL   +L NL  ++L
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL--ASLPNLIEVHL 202

Query: 259 RNNSFSSSIPSEIGNLKSLSILEL 282
           +NN  S   P  + N  +L I+ L
Sbjct: 203 KNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 31/242 (12%), Positives = 73/242 (30%), Gaps = 18/242 (7%)

Query: 473 TLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISS 532
           +++       I     L N I++   ++++T  ++++      +T +             
Sbjct: 2   SITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADL--DGITTLSAFGTGVTT--IE 57

Query: 533 DWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLI 592
                 NL   ++  N I    P +         +  +    +  I       +  +   
Sbjct: 58  GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST 117

Query: 593 LRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPI 652
              +       S L  L        + + L+             +   LS          
Sbjct: 118 QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLT----------NLQYLSIGNAQVSDLT 167

Query: 653 KLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYID 712
            L  L  L+ L    N +    P  + ++ +L  ++L +N +SD  P      + L  + 
Sbjct: 168 PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223

Query: 713 IS 714
           ++
Sbjct: 224 LT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 40/243 (16%), Positives = 82/243 (33%), Gaps = 23/243 (9%)

Query: 90  TNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPP 149
           T +N IF         ++    +    ++ + T+     +L  +  L       +     
Sbjct: 7   TAINVIF-----PDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IE 57

Query: 150 QIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILY 209
            + +L+ +  L L  NQ++   P +     +  EL+        +I       T      
Sbjct: 58  GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST 117

Query: 210 LHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPS 269
              +    +  S +  L                I          +  YL   +   S  +
Sbjct: 118 QITDVTPLAGLSNLQVL----------YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT 167

Query: 270 EIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLE 329
            + NL  L+ L+  +N+++   PL   +L NL  ++L  N +S   P  + N  +L  + 
Sbjct: 168 PLANLSKLTTLKADDNKISDISPL--ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223

Query: 330 LAD 332
           L +
Sbjct: 224 LTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 86  SINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQ 142
           +    + N+I  I P  + ++  L  + L +N  S   P  + N S L  + L+ NQ
Sbjct: 176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 40/215 (18%), Positives = 71/215 (33%), Gaps = 22/215 (10%)

Query: 154 LSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNN 213
           L+    +   K+ ++  +      L  +  L+     +       +  L NL  L L +N
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN 73

Query: 214 SLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGN 273
            ++   P +     +   L+    K   +I       T   T     +    +  S +  
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 274 LKSLSILELGENRL--------------NGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI 319
           L          + L                S    L NL+ L TL    N +S   P  +
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 320 GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYL 354
            +L +L  + L +N++S   P  L N +NL    L
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 3e-11
 Identities = 45/190 (23%), Positives = 66/190 (34%), Gaps = 7/190 (3%)

Query: 459 IPEELGNLVKLTMLTLSDNQLQGSIPN-LRNLTNLIRLRLNRNHLTCNISESFGIHPKLT 517
           +P +L      T+L LS+N L       L   T L +L L+R  LT            + 
Sbjct: 25  LPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ---VDGTLPVL 79

Query: 518 FIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGK 577
                 +N    +       P L   DVS N +       +    +L  + L  N +   
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139

Query: 578 IPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLH 637
            P  +     L KL L  N L       L  L  L+ L L  N L  +IP+       L 
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP 198

Query: 638 YLNLSTNQFI 647
           +  L  N ++
Sbjct: 199 FAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 3e-11
 Identities = 57/210 (27%), Positives = 80/210 (38%), Gaps = 7/210 (3%)

Query: 174 EVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLA 233
           EV  ++S  E+      L  ++PP L    +  IL+L  N L     + +     L+ L 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 234 LGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPL 293
           L   +L          L  L TL L +N   S          +L++L++  NRL      
Sbjct: 62  LDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTL-PALTVLDVSFNRLTSLPLG 118

Query: 294 SLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFY 353
           +L  L  L  LYL  N L    P  +     L  L LA+N L+      L  L NL    
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 354 LYKNSLSGSIPSEIGNLKSLSNLDLSENKL 383
           L +NSL  +IP        L    L  N  
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (149), Expect = 5e-11
 Identities = 48/212 (22%), Positives = 68/212 (32%), Gaps = 8/212 (3%)

Query: 77  HCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFL 136
             + V     +N    N     +PP +        L LS N         +   + L  L
Sbjct: 5   EVSKVASHLEVNCDKRN--LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 137 YLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIP 196
            L   + +         +     L   + Q    +   +  L+ L+    + N L     
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV---SFNRLTSLPL 117

Query: 197 PSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTL 256
            +L  L  L  LYL  N L    P  +     L  L+L NN L       L  L NLDTL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 257 YLRNNSFSSSIPSEIGNLKSLSILELGENRLN 288
            L+ NS   +IP        L    L  N   
Sbjct: 178 LLQENSL-YTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 46/212 (21%), Positives = 74/212 (34%), Gaps = 6/212 (2%)

Query: 294 SLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFY 353
            +  + +   +     +L+ ++P ++   K  + L L++N L +     L   T L    
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLT--Q 59

Query: 354 LYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPR 413
           L  +    +     G L  L  LDLS N+L               +  +  N L      
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL-DVSFNRLTSLPLG 118

Query: 414 EIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLT 473
            +  L  L EL L  N+L       L     +  L+L +N L+ +    L  L  L  L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 474 LSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCN 505
           L +N L            L    L+ N   CN
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 24/193 (12%)

Query: 548 NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELG 607
              + +LPP++       ++ LS N +     + +   + L +L L R +L         
Sbjct: 19  KRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL 76

Query: 608 SLIQL---------------------EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQF 646
            ++                         LD+S NRL++    +L  L +L  L L  N+ 
Sbjct: 77  PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136

Query: 647 IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMN 706
               P  L     L +L L++N L +     +  + +L+ L L  N+L   IP+ F   +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSH 195

Query: 707 GLLYIDISYNELH 719
            L +  +  N   
Sbjct: 196 LLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 15/84 (17%), Positives = 23/84 (27%), Gaps = 7/84 (8%)

Query: 60  WTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSF 119
              N    + P                      N +  +    +  +  L  L L  NS 
Sbjct: 131 LKGNELKTLPPGLLTPTPKLE------KLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 120 SGTIPPQIGNLSMLKFLYLSANQF 143
             TIP       +L F +L  N +
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 581 EIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLN 640
           E+ K++S +++   +  L   LP +L        L LS N L      +L    +L  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 641 LSTNQFIQ 648
           L   +  +
Sbjct: 62  LDRAELTK 69

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 660 LSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719
             E++     L   +P  +   +   +L+LS N L  F          L  +++   EL 
Sbjct: 12  HLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.004
 Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 1/128 (0%)

Query: 62  LNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSG 121
           L                       ++   + N++  +    +  + +L+ L L  N    
Sbjct: 79  LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 122 TIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSL 181
             P  +     L+ L L+ N  +      +  L  ++ L L +N L   IP    G   L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

Query: 182 NELALTSN 189
               L  N
Sbjct: 198 PFAFLHGN 205

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (135), Expect = 6e-09
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 10/120 (8%)

Query: 610 IQLEYLDLSSNRLSNS-IPRSLGNLVKLHYLNLSTNQF----IQEIPIKLEKLIHLSELD 664
           + ++ LD+    LS++     L  L +   + L          ++I   L     L+EL+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 665 LSHNFLGKEIPSQIC-----NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719
           L  N LG      +          ++ L+L +  L+             L      +   
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 1e-06
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 9/80 (11%)

Query: 635 KLHYLNLSTNQF----IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC-----NMRSLE 685
            L  L L+           +   L     L ELDLS+N LG     Q+          LE
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 686 MLNLSHNNLSDFIPRCFEEM 705
            L L     S+ +    + +
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 2e-06
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 5/88 (5%)

Query: 561 SSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQL----FGQLPSELGSLIQLEYL 615
           S  +  +D+    +     +E+   L     + L    L       + S L     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 616 DLSSNRLSNSIPRSLGNLVKLHYLNLST 643
           +L SN L +     +   ++     +  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQK 88

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 4e-06
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 5/91 (5%)

Query: 204 NLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKL----CGSIPLFLGNLTNLDTLYL 258
           ++  L +    LS +  +E+   L+    + L +  L    C  I   L     L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 259 RNNSFSSSIPSEIGNLKSLSILELGENRLNG 289
           R+N         +         ++ +  L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 7e-06
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 9/81 (11%)

Query: 586 SSLIKLILRRNQLFGQ----LPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVK-----L 636
           S L  L L    +       L + L +   L  LDLS+N L ++    L   V+     L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 637 HYLNLSTNQFIQEIPIKLEKL 657
             L L    + +E+  +L+ L
Sbjct: 429 EQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 9e-06
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 15/94 (15%)

Query: 611 QLEYLDLSSNRLSN----SIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLI-----HLS 661
            L  L L+   +S+    S+  +L     L  L+LS N       ++L + +      L 
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 662 ELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS 695
           +L L   +  +E+         L+ L     +L 
Sbjct: 430 QLVLYDIYWSEEME------DRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 1e-05
 Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 5/96 (5%)

Query: 252 NLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNG----SIPLSLGNLTNLDTLYL 306
           ++ +L ++    S +  +E+   L+   ++ L +  L       I  +L     L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 307 YTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHY 342
            +N L       +         ++    L +     
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-05
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 372 SLSNLDLSENKLSGS-IPHSLGNLTNLAILYLHSNTL----LGSIPREIGNLKSLFELQL 426
            + +LD+   +LS +     L  L    ++ L    L       I   +    +L EL L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 427 GDNKLSNSISHSLGNLTHMTLLALYDNALSG 457
             N+L +   H +          +   +L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-05
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 13/93 (13%)

Query: 201 NLTNLAILYLHNNSLSG----SIPSEIGNLKSLSSLALGNNKLCGSIPLFLG-----NLT 251
             + L +L+L +  +S     S+ + +    SL  L L NN L  +  L L         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 252 NLDTLYLRNNSFSSSIPSEIGNLK----SLSIL 280
            L+ L L +  +S  +   +  L+    SL ++
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 5/95 (5%)

Query: 300 NLDTLYLYTNSLSGSIPSEI-GNLKSLSGLELADNELS----SSIPHYLGNLTNLAAFYL 354
           ++ +L +    LS +  +E+   L+    + L D  L+      I   L     LA   L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 355 YKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPH 389
             N L       +       +  + +  L      
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 13/95 (13%)

Query: 321 NLKSLSGLELADNELSSS-IPHYLGNLTNLAAFYLYKNSLSG----SIPSEIGNLKSLSN 375
           +++SL   ++   ELS +     L  L       L    L+      I S +    +L+ 
Sbjct: 3   DIQSL---DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 376 LDLSENKLSGSIPHSLG-----NLTNLAILYLHSN 405
           L+L  N+L     H +          +  L L + 
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 4e-05
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 9/85 (10%)

Query: 562 SQLHVIDLSANHI----IGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQ-----L 612
           S L V+ L+   +       + + +    SL +L L  N L      +L   ++     L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 613 EYLDLSSNRLSNSIPRSLGNLVKLH 637
           E L L     S  +   L  L K  
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 6e-05
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 9/84 (10%)

Query: 249 NLTNLDTLYLRNNSFS----SSIPSEIGNLKSLSILELGENRLNGSIPLSLG-----NLT 299
             + L  L+L +   S    SS+ + +    SL  L+L  N L  +  L L         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 300 NLDTLYLYTNSLSGSIPSEIGNLK 323
            L+ L LY    S  +   +  L+
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 1e-04
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 5/95 (5%)

Query: 348 NLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLSG----SIPHSLGNLTNLAILYL 402
           ++ +  +    LS +  +E+   L+    + L +  L+      I  +L     LA L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 403 HSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISH 437
            SN L       +         ++    L N    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 9/97 (9%)

Query: 332 DNELSSSIPHYLGNLTNLAAFYLYKNSLSG----SIPSEIGNLKSLSNLDLSENKLSGSI 387
           D  +           + L   +L    +S     S+ + +    SL  LDLS N L  + 
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 388 PHSLG-----NLTNLAILYLHSNTLLGSIPREIGNLK 419
              L          L  L L+       +   +  L+
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 9/83 (10%)

Query: 225 NLKSLSSLALGNNKL----CGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIG-----NLK 275
               L  L L +  +    C S+   L    +L  L L NN    +   ++         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 276 SLSILELGENRLNGSIPLSLGNL 298
            L  L L +   +  +   L  L
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 18/123 (14%), Positives = 34/123 (27%), Gaps = 9/123 (7%)

Query: 69  SPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGT----IP 124
              +    +   +    S N      +  +        S L+ L L+    S +    + 
Sbjct: 331 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 390

Query: 125 PQIGNLSMLKFLYLSANQFSGRIPPQIG-----HLSYIEALHLFKNQLSGPIPHEVGGLS 179
             +     L+ L LS N        Q+          +E L L+    S  +   +  L 
Sbjct: 391 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

Query: 180 SLN 182
              
Sbjct: 451 KDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 9/85 (10%)

Query: 393 NLTNLAILYLHSNTL----LGSIPREIGNLKSLFELQLGDNKLSNSISHSLG-----NLT 443
             + L +L+L    +      S+   +    SL EL L +N L ++    L         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 444 HMTLLALYDNALSGVIPEELGNLVK 468
            +  L LYD   S  + + L  L K
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.002
 Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 5/90 (5%)

Query: 109 LKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGR----IPPQIGHLSYIEALHLF 163
           ++ LD+     S     ++   L   + + L     +      I   +     +  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 164 KNQLSGPIPHEVGGLSSLNELALTSNFLKG 193
            N+L     H V          +    L+ 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 10/104 (9%)

Query: 60  WTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQI----FGIIPPQIGNISKLKYLDLS 115
            + N                    +  + L +   +       +   +     L+ LDLS
Sbjct: 347 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD-CDVSDSSCSSLAATLLANHSLRELDLS 405

Query: 116 SNSFSGTIPPQIG-----NLSMLKFLYLSANQFSGRIPPQIGHL 154
           +N        Q+         +L+ L L    +S  +  ++  L
Sbjct: 406 NNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 5/90 (5%)

Query: 157 IEALHLFKNQLS-GPIPHEVGGLSSLNELALTSNFLKG----SIPPSLGNLTNLAILYLH 211
           I++L +   +LS       +  L     + L    L       I  +L     LA L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 212 NNSLSGSIPSEIGNLKSLSSLALGNNKLCG 241
           +N L       +       S  +    L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.6 bits (130), Expect = 7e-09
 Identities = 35/202 (17%), Positives = 66/202 (32%), Gaps = 15/202 (7%)

Query: 441 NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRN 500
                    L   +++  + +    L  +  +  +++ ++ S+  ++ L N+ +L LN N
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGN 78

Query: 501 HLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGD 560
            LT     +   +    F+D +       +               S+ +   S    +  
Sbjct: 79  KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL------SLEHNGISDINGLVH 132

Query: 561 SSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSN 620
             QL  + L  N I                  L            L  L +L+ L LS N
Sbjct: 133 LPQLESLYLGNNKITDITVLSRLT----KLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN 188

Query: 621 RLSNSIPRSLGNLVKLHYLNLS 642
            +S+   R+L  L  L  L L 
Sbjct: 189 HISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 4e-07
 Identities = 36/204 (17%), Positives = 64/204 (31%), Gaps = 16/204 (7%)

Query: 201 NLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRN 260
                    L   S++ ++      L S+  +   N+ +     +    L N+  L+L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGI--QYLPNVTKLFLNG 77

Query: 261 NSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIG 320
           N  +         L +L  L       N    LS              ++    I   + 
Sbjct: 78  NKLTDIK-----PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH 132

Query: 321 NLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSE 380
             +  S     +     ++   L  L  L+      + +       +  L  L NL LS+
Sbjct: 133 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-----PLAGLTKLQNLYLSK 187

Query: 381 NKLSGSIPHSLGNLTNLAILYLHS 404
           N +S     +L  L NL +L L S
Sbjct: 188 NHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 40/201 (19%), Positives = 66/201 (32%), Gaps = 15/201 (7%)

Query: 297 NLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYK 356
                    L   S++ ++      L S+  +   ++++ S     +  L N+   +L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 357 NSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIG 416
           N L+   P        L+NL                +           +     I    G
Sbjct: 78  NKLTDIKP--------LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 129

Query: 417 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 476
            +       L       +    L  LT +  L+L DN +S ++P  L  L KL  L LS 
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187

Query: 477 NQLQGSIPNLRNLTNLIRLRL 497
           N +   +  L  L NL  L L
Sbjct: 188 NHIS-DLRALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 6e-06
 Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 21/193 (10%)

Query: 345 NLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHS 404
                    L K S++ ++      L S+  +  + + +       +  L N+  L+L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNG 77

Query: 405 NTLLG---------------SIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLA 449
           N L                    +           +L    L ++    +  L H+  L 
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 450 LYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISES 509
                 + +    + + +        ++     I  L  LT L  L L++NH++     +
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRA 195

Query: 510 FGIHPKLTFIDLS 522
                 L  ++L 
Sbjct: 196 LAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 34/203 (16%), Positives = 62/203 (30%), Gaps = 16/203 (7%)

Query: 249 NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYT 308
                    L+  S + ++      L S+  +    + +     +    L N+  L+L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 77

Query: 309 NSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIG 368
           N L+   P        L+ L+               +           +     I    G
Sbjct: 78  NKLTDIKP--------LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 129

Query: 369 NLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGD 428
            +       L       +    L  LT L  L L  N +   +P  +  L  L  L L  
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187

Query: 429 NKLSNSISHSLGNLTHMTLLALY 451
           N +S+    +L  L ++ +L L+
Sbjct: 188 NHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 22/215 (10%)

Query: 218 SIPSEIG------NLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEI 271
           ++P+ I                L    +  ++      L ++D +   N+   S     I
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQG--I 64

Query: 272 GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELA 331
             L +++ L L  N+L    PL+         L             +  +         +
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKPLA--------NLKNLGWLFLDENKVKDLSSLKDLKKLKS 116

Query: 332 DNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSL 391
            +   + I    G +       LY  +   +  + +  L  L  L L +N++S  +P  L
Sbjct: 117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--L 174

Query: 392 GNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQL 426
             LT L  LYL  N +  S  R +  LK+L  L+L
Sbjct: 175 AGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 14/178 (7%)

Query: 105 NISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFK 164
            ++ +  +  +++         I  L  +  L+L+ N+ +            +  L    
Sbjct: 44  ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIK--------PLANLKNLG 93

Query: 165 NQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIG 224
                    +        +   + +     I    G +    +  L+  +   +  + + 
Sbjct: 94  WLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLS 153

Query: 225 NLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILEL 282
            L  L +L+L +N++   +PL    LT L  LYL  N  S      +  LK+L +LEL
Sbjct: 154 RLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 41/218 (18%), Positives = 71/218 (32%), Gaps = 22/218 (10%)

Query: 264 SSSIPSEIG------NLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPS 317
           + ++P+ I                L +  +  ++  +   L ++D +    + +      
Sbjct: 7   TITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG- 63

Query: 318 EIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLD 377
            I  L +++ L L  N+L+      L NL NL   +L +N     +              
Sbjct: 64  -IQYLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENK----VKDLSSLKDLKKLKS 116

Query: 378 LSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISH 437
           LS      S  + L +L  L  LYL +N +                          S   
Sbjct: 117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS----LEDNQISDIV 172

Query: 438 SLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLS 475
            L  LT +  L L  N +S +    L  L  L +L L 
Sbjct: 173 PLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 37/218 (16%), Positives = 67/218 (30%), Gaps = 21/218 (9%)

Query: 90  TNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPP 149
           T + QIF          ++    +L   S +  +      L+ +  +  + +        
Sbjct: 12  TPIKQIF-----SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG- 63

Query: 150 QIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILY 209
            I +L  +  L L  N+L+   P     L++L  L             S           
Sbjct: 64  -IQYLPNVTKLFLNGNKLTDIKP-----LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117

Query: 210 LHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPS 269
              ++    I   +   +  S     N     ++   L  L       L       S   
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLD-----TLSLEDNQISDIV 172

Query: 270 EIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLY 307
            +  L  L  L L +N ++  +  +L  L NLD L L+
Sbjct: 173 PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 28/212 (13%), Positives = 68/212 (32%), Gaps = 20/212 (9%)

Query: 481 GSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWG--KCP 538
             I +       I+  L +  +T  ++++      +  I  ++++    I S  G    P
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVTDAVTQNEL--NSIDQIIANNSD----IKSVQGIQYLP 68

Query: 539 NLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL 598
           N+    ++ N +       I   + L  +                K    +K +   +  
Sbjct: 69  NVTKLFLNGNKLTD-----IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG 123

Query: 599 FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLI 658
              +   +           ++     ++   L             +  I +I   L  L 
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTK----LDTLSLEDNQISDIV-PLAGLT 178

Query: 659 HLSELDLSHNFLGKEIPSQICNMRSLEMLNLS 690
            L  L LS N +  ++ + +  +++L++L L 
Sbjct: 179 KLQNLYLSKNHI-SDLRA-LAGLKNLDVLELF 208

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 37/264 (14%), Positives = 73/264 (27%), Gaps = 20/264 (7%)

Query: 376 LDLSENKLSGSIPHSLGNLTNLAILYLH-SNTLLGSIPREIGNLKSLFELQLGDNKLS-N 433
           LDL+   L    P   G L +  ++      + +     E  +   +  + L ++ +  +
Sbjct: 5   LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 434 SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLI 493
           ++   L   + +  L+L    LS  I   L     L  L LS             L++  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 494 RLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGS 553
           RL         + +E               +        +                +   
Sbjct: 122 RLDELNLSWCFDFTEKHVQVA-------VAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 174

Query: 554 LPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRR-NQLFGQLPSELGSLIQL 612
                 D S   ++         ++         L  L L R   +  +   ELG +  L
Sbjct: 175 PNLVHLDLSDSVMLKNDCFQEFFQLNY-------LQHLSLSRCYDIIPETLLELGEIPTL 227

Query: 613 EYLDLSSNRLSNSIPRSLGNLVKL 636
           + L +       ++      L  L
Sbjct: 228 KTLQVFGIVPDGTLQLLKEALPHL 251

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 33/269 (12%), Positives = 81/269 (30%), Gaps = 15/269 (5%)

Query: 470 TMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG- 528
             L L+   L   +        +I  R  R+ +   ++E F    ++  +DLS++     
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVS 61

Query: 529 QISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSL 588
            +     +C  L    +    +   +   +  +S L  ++LS      +   +    S  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 589 IKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ 648
               L  +  F      +   +      ++   LS        + +            + 
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 649 ---------EIPIKLEKLIHLSELDLSH-NFLGKEIPSQICNMRSLEMLNLSHNNLSDFI 698
                    +   +  +L +L  L LS    +  E   ++  + +L+ L +        +
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 699 PRCFEEMNGLLYIDISYNELHGPIPNSTA 727
               E    L ++ I+ +        +  
Sbjct: 242 QLLKE---ALPHLQINCSHFTTIARPTIG 267

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 7e-07
 Identities = 36/258 (13%), Positives = 73/258 (28%), Gaps = 14/258 (5%)

Query: 80  HVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYL 138
            +     I              +  +  +++++DLS++    +    I    S L+ L L
Sbjct: 19  RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 78

Query: 139 SANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPS 198
              + S  I   +   S +  L+L           +    S      L  ++        
Sbjct: 79  EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 138

Query: 199 LGNLTNLAILYLHNNSLSG---------SIPSEIGNLKSLSSLALGNNKLCGSIPLFLGN 249
           +          +   +LSG                    +      +  L          
Sbjct: 139 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 198

Query: 250 LTNLDTLYLRN-NSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYT 308
           L  L  L L            E+G + +L  L++     +G++ L    L +L    +  
Sbjct: 199 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INC 255

Query: 309 NSLSGSIPSEIGNLKSLS 326
           +  +      IGN K+  
Sbjct: 256 SHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 35/274 (12%), Positives = 79/274 (28%), Gaps = 16/274 (5%)

Query: 112 LDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSG-P 170
           LDL+  +    +  ++ +   +       +     +         ++ + L  + +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 171 IPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH--NNSLSGSIPSEIGNLKS 228
           +   +   S L  L+L    L   I  +L   +NL  L L   +     ++ + + +   
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 229 LSSL-------ALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILE 281
           L  L           +       +         + Y +N   S            + +  
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 282 LGENRLNGSIPLSLGNLTNLDTLYL-YTNSLSGSIPSEIGNLKSLSGLELADNELSSSIP 340
                L          L  L  L L     +      E+G + +L  L++       ++ 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 341 HYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLS 374
                L +L    +  +  +      IGN K+  
Sbjct: 243 LLKEALPHLQ---INCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 2e-05
 Identities = 38/287 (13%), Positives = 82/287 (28%), Gaps = 20/287 (6%)

Query: 136 LYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG-S 194
           L L+       +  ++     I A    ++ +  P+  E      +  + L+++ ++  +
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVI-AFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVST 62

Query: 195 IPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLD 254
           +   L   + L  L L    LS  I + +    +L        +L  S            
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV-------RLNLSGCSGFSEFALQT 115

Query: 255 TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGS 314
            L   +     ++       +    + +       +     G   NL    L T      
Sbjct: 116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 175

Query: 315 IPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLS 374
               +    S+        E          +L+           +      E+G + +L 
Sbjct: 176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC-------YDIIPETLLELGEIPTLK 228

Query: 375 NLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSL 421
            L +      G++      L +L I   + +         IGN K+ 
Sbjct: 229 TLQVFGIVPDGTLQLLKEALPHLQI---NCSHFTTIARPTIGNKKNQ 272

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 6e-04
 Identities = 41/234 (17%), Positives = 66/234 (28%), Gaps = 37/234 (15%)

Query: 83  RVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQ 142
           RV  ++L+N       +   +   SKL+ L L     S  I   +   S L  L LS   
Sbjct: 47  RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 106

Query: 143 FSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG--------- 193
                  Q    S      L  +         V    +     +T   L G         
Sbjct: 107 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 166

Query: 194 ------------------------SIPPSLGNLTNLAILYLHN-NSLSGSIPSEIGNLKS 228
                                           L  L  L L     +      E+G + +
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 229 LSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILEL 282
           L +L +      G++ L    L +L    +  + F++     IGN K+  I  +
Sbjct: 227 LKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNKKNQEIWGI 277

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.5 bits (124), Expect = 2e-08
 Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 8/178 (4%)

Query: 112 LDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGP 170
           +D +       IP  I        L L+ N+        + G L ++  L L +NQL+G 
Sbjct: 13  VDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 171 IPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLS 230
            P+   G S + EL L  N +K         L  L  L L++N +S  +P    +L SL+
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 231 SLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN 288
           SL L +N    +  L       L    L   +     PS+   ++ + I +L  +   
Sbjct: 130 SLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFK 183

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 46/186 (24%), Positives = 73/186 (39%), Gaps = 8/186 (4%)

Query: 208 LYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFL-GNLTNLDTLYLRNNSFSSS 266
           +      L   IP +I      + L L +N+L       L G L +L  L L+ N  +  
Sbjct: 13  VDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 267 IPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLS 326
            P+       +  L+LGEN++          L  L TL LY N +S  +P    +L SL+
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 327 GLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGS 386
            L LA N  + +          L    L   +     PS+   ++ +   DL  ++   S
Sbjct: 130 SLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCS 185

Query: 387 IPHSLG 392
             +S G
Sbjct: 186 SENSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 32/159 (20%), Positives = 53/159 (33%), Gaps = 5/159 (3%)

Query: 511 GIHPKLTFIDLSHNNFYGQI-SSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDL 569
            I    T + L+ N          +G+ P+L   ++  N + G  P     +S +  + L
Sbjct: 26  DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85

Query: 570 SANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRS 629
             N I          L  L  L L  NQ+   +P     L  L  L+  ++   N     
Sbjct: 86  GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN-LASNPFNCNCHL 144

Query: 630 LGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHN 668
                 L   +L+        P    K+  +   DL H+
Sbjct: 145 AWFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHS 180

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 42/174 (24%), Positives = 65/174 (37%), Gaps = 28/174 (16%)

Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREIGNLKS 420
            IP +I      + L L++N+L       L G L +L  L L  N L G  P        
Sbjct: 22  EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 421 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTM--------- 471
           + ELQLG+NK+    +     L  +  L LYDN +S V+P    +L  LT          
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 472 --------------LTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFG 511
                          +L+    +   P+   + ++    L  +   C+   S G
Sbjct: 140 CNCHLAWFAEWLRKKSLNGGAARCGAPS--KVRDVQIKDLPHSEFKCSSENSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 8e-04
 Identities = 37/197 (18%), Positives = 66/197 (33%), Gaps = 31/197 (15%)

Query: 290 SIPLSLGNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTN 348
            IP  +    +   L L  N L       + G L  L  LEL  N+L+   P+     ++
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 349 LAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLL 408
           +    L +N +          L  L  L+L +N++S  +P S  +L +L  L L SN   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 409 GSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVK 468
            +                                  +   +L   A     P ++ +   
Sbjct: 140 CNCH-------------------------LAWFAEWLRKKSLNGGAARCGAPSKVRD--- 171

Query: 469 LTMLTLSDNQLQGSIPN 485
           + +  L  ++ + S  N
Sbjct: 172 VQIKDLPHSEFKCSSEN 188

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 38/180 (21%), Positives = 67/180 (37%), Gaps = 7/180 (3%)

Query: 548 NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSEL 606
              +  +P +I        + L+ N +       + G+L  L+KL L+RNQL G  P+  
Sbjct: 17  GRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF 74

Query: 607 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLS 666
                ++ L L  N++     +    L +L  LNL  NQ    +P   E L  L+ L+  
Sbjct: 75  EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN-L 133

Query: 667 HNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNST 726
            +               L   +L+        P    ++  +   D+ ++E      NS 
Sbjct: 134 ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEFKCSSENSE 190

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 1e-06
 Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 5/136 (3%)

Query: 372 SLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNK 430
             S L  + +       H L    NL  LY+ +   L  +       L  L  L +  + 
Sbjct: 9   GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 431 LSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ--GSIPNLRN 488
           L      +      ++ L L  NAL   +  +    + L  L LS N L    ++  L+ 
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126

Query: 489 LTNLIRLRLNRNHLTC 504
                   +    L C
Sbjct: 127 WEEEGLGGVPEQKLQC 142

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 3/110 (2%)

Query: 611 QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEK-LIHLSELDLSHNF 669
               L  + +         L     L  L +   Q +Q + ++  + L  L  L +  + 
Sbjct: 9   GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 670 LGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719
           L    P        L  LNLS N L     +  + ++    + +S N LH
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSL-QELVLSGNPLH 116

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 21/155 (13%), Positives = 42/155 (27%), Gaps = 2/155 (1%)

Query: 125 PQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNE 183
           P          L  + +         +     +  L++   Q    +      GL  L  
Sbjct: 2   PDACCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 184 LALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSI 243
           L +  + L+   P +      L+ L L  N+L       +  L     +  GN   C   
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120

Query: 244 PLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLS 278
             +L          +            + ++ + S
Sbjct: 121 LRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 17/133 (12%), Positives = 35/133 (26%), Gaps = 1/133 (0%)

Query: 99  IPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQIGHLSYI 157
               +     L  L + +      +  +    L  L+ L +  +      P        +
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 158 EALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSG 217
             L+L  N L       V GLS    +   +          L       +  +    L  
Sbjct: 83  SRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQC 142

Query: 218 SIPSEIGNLKSLS 230
                + ++ + S
Sbjct: 143 HGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 22/148 (14%), Positives = 40/148 (27%), Gaps = 2/148 (1%)

Query: 251 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP-LSLGNLTNLDTLYLYTN 309
                L    +         +   ++L+ L +   +    +    L  L  L  L +  +
Sbjct: 8   HGSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 310 SLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN 369
            L    P        LS L L+ N L S     +  L+                   +  
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126

Query: 370 LKSLSNLDLSENKLSGSIPHSLGNLTNL 397
            +      + E KL       L ++ N 
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLAHMPNA 154

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.2 bits (109), Expect = 1e-06
 Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 591 LILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEI 650
           L L    L   +   L  L+ + +LDLS NRL    P +L  L  L  L  S N      
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 651 PIKLEKLIHLSELDLSHNFL-GKEIPSQICNMRSLEMLNLSHNNLSD 696
            +    L  L EL L +N L        + +   L +LNL  N+L  
Sbjct: 60  GVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 22/122 (18%), Positives = 37/122 (30%), Gaps = 9/122 (7%)

Query: 110 KYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIP--PQIGHLSYIEALHLFKNQL 167
           + L L+      T+   +  L ++  L LS N+     P    +  L  ++A       +
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 168 SGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLK 227
            G           L    L       +    L +   L +L L  NSL          L 
Sbjct: 59  DGVANLPRLQELLLCNNRLQQ----SAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLA 113

Query: 228 SL 229
            +
Sbjct: 114 EM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 6/119 (5%)

Query: 376 LDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSI 435
           L L+   L+  +   L  L  +  L L  N L    P  +  L+ L  LQ  DN L N  
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 436 SHSLGNLTHMTLLALYDNALSGV-IPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLI 493
             +  NL  +  L L +N L      + L +  +L +L L  N L         L  ++
Sbjct: 60  GVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query: 471 MLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQI 530
           +L L+   L   + +L  L  +  L L+ N L      +      L  +  S N      
Sbjct: 2   VLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVD 59

Query: 531 SSDWGKCPNLGTFDVSVNNIIG-SLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLI 589
                  P L    +  N +   +    +    +L +++L  N +         +L+ ++
Sbjct: 60  GVAN--LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 448 LALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNIS 507
           L L    L+  +   L  L+ +T L LS N+L+   P L  L  L  L+ + N       
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA--LENV 58

Query: 508 ESFGIHPKLTFIDLSHNNF-YGQISSDWGKCPNLGTFDVSVNNIIG 552
           +     P+L  + L +N             CP L   ++  N++  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 14/130 (10%)

Query: 134 KFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG 193
           + L+L+    +  +   +  L  +  L L  N+L    P     L++L  L +       
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNA 54

Query: 194 SI-PPSLGNLTNLAILYLHNNSL-SGSIPSEIGNLKSLSSLALGNNKLCG------SIPL 245
                 + NL  L  L L NN L   +    + +   L  L L  N LC        +  
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 246 FLGNLTNLDT 255
            L +++++ T
Sbjct: 115 MLPSVSSILT 124

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 6/108 (5%)

Query: 614 YLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKE 673
            L L+   L+  +   L  L+ + +L+LS N+     P  L  L  L  L  S N    E
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNA--LE 56

Query: 674 IPSQICNMRSLEMLNLSHNNLSDF-IPRCFEEMNGLLYIDISYNELHG 720
               + N+  L+ L L +N L      +       L+ +++  N L  
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 6e-05
 Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 12/127 (9%)

Query: 184 LALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSI 243
           L L    L  ++   L  L  +  L L +N L    P+ +  L+ L  L   +N L    
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD 59

Query: 244 PLFLGNLTNLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGENRLNG------SIPLSLG 296
            +   NL  L  L L NN     +    + +   L +L L  N L         +   L 
Sbjct: 60  GVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 297 NLTNLDT 303
           +++++ T
Sbjct: 118 SVSSILT 124

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 6/108 (5%)

Query: 279 ILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSS 338
           +L L    L  ++   L  L  +  L L  N L    P+ +  L+ L  L+ +DN L + 
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV 58

Query: 339 IPHYLGNLTNLAAFYLYKNSL-SGSIPSEIGNLKSLSNLDLSENKLSG 385
                          L  N L   +    + +   L  L+L  N L  
Sbjct: 59  DGVANLPRLQE--LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 7/119 (5%)

Query: 160 LHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSI 219
           LHL    L+  +   +  L  +  L L+ N L+  +PP+L  L  L +L   +N+     
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNA--LEN 57

Query: 220 PSEIGNLKSLSSLALGNNKL-CGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSL 277
              + NL  L  L L NN+L   +    L +   L  L L+ NS           L  +
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 6e-04
 Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 542 TFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQ 601
              ++  ++  ++   +     +  +DLS N +    P+ +  L  L  L    N L   
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN- 57

Query: 602 LPSELGSLIQLEYLDLSSNRLSN-SIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL 660
               + +L +L+ L L +NRL   +  + L +  +L  LNL  N   QE  I+      L
Sbjct: 58  -VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 661 SEL 663
             +
Sbjct: 117 PSV 119

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 36/199 (18%), Positives = 70/199 (35%), Gaps = 15/199 (7%)

Query: 441 NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRN 500
            L       L    ++  + +   +L ++T L      ++ SI  +  L NL ++  + N
Sbjct: 16  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNN 72

Query: 501 HLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGD 560
            LT               ++ +       +++           +   +            
Sbjct: 73  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--------L 124

Query: 561 SSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSN 620
            +  ++  L  +       S +  L+SL +L    NQ+    P  L +L  LE LD+SSN
Sbjct: 125 KNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSN 182

Query: 621 RLSNSIPRSLGNLVKLHYL 639
           ++S+     L  L  L  L
Sbjct: 183 KVSD--ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 32/190 (16%), Positives = 54/190 (28%), Gaps = 20/190 (10%)

Query: 225 NLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGE 284
            L       LG   +  ++     +L  + TL        S     +  L +L+ +    
Sbjct: 16  ALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 71

Query: 285 NRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLG 344
           N+L    PL          +     +    + +               +         L 
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 345 NLTNLAAF--------------YLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHS 390
            L   +                 L  +S   +    + NL +L  LD+S NK+S      
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISV 189

Query: 391 LGNLTNLAIL 400
           L  LTNL  L
Sbjct: 190 LAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 35/191 (18%), Positives = 58/191 (30%), Gaps = 47/191 (24%)

Query: 345 NLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHS 404
            L       L K +++ ++     +L  ++ L      +  SI   +  L NL  +   +
Sbjct: 16  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSN 71

Query: 405 NTLLG----------------------------------------SIPREIGNLKSLFEL 424
           N L                                           I             
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 425 QLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP 484
           +L  +  + S   +L  LT +  L    N ++ + P  L NL  L  L +S N++   I 
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS-DIS 188

Query: 485 NLRNLTNLIRL 495
            L  LTNL  L
Sbjct: 189 VLAKLTNLESL 199

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 48/334 (14%), Positives = 96/334 (28%), Gaps = 41/334 (12%)

Query: 371 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL----LGSIPREIGNLKSLFELQL 426
           KSL    ++      S+   L    ++  + L  NT+       +   I + K L   + 
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 427 GDN---KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSI 483
            D    ++ + I  +L  L    L     + +            +  +  LS +     +
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 484 PNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS-----SDWGKCP 538
               N             L          +       +   N     S       +    
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 539 NLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHII---------GKIPSEIGKLSSLI 589
            L T  +  N I       +      +  +L    +            +   +    +L 
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 590 KLILRRNQLFGQLPSELG------SLIQLEYLDLSSNRLSNSIPRSL-----GNLVKLHY 638
           +L L    L  +  + +         I L+ L L  N +     R+L       +  L +
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 639 LNLSTNQFIQEIPI--KLEKLI------HLSELD 664
           L L+ N+F +E  +  ++ ++        L ELD
Sbjct: 307 LELNGNRFSEEDDVVDEIREVFSTRGRGELDELD 340

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.0 bits (112), Expect = 3e-06
 Identities = 37/319 (11%), Positives = 82/319 (25%), Gaps = 19/319 (5%)

Query: 404 SNTLLGSIPREIGNLKSLFELQLGDNKLSN----SISHSLGNLTHMTLLALYDN---ALS 456
           +     S+   +    S+ E+ L  N +       +S ++ +   + +    D     + 
Sbjct: 16  TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK 75

Query: 457 GVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKL 516
             IPE L  L++  +     + ++ S            +     H               
Sbjct: 76  DEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP 135

Query: 517 TFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIG 576
                          +   K        +   N + +   +    +      L    ++ 
Sbjct: 136 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ 195

Query: 577 KIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKL 636
                 G    L++ +    +L                   SS              + L
Sbjct: 196 NGIRPEGIEHLLLEGLAYCQELKVLDLQ-----DNTFTHLGSSALAIALKSWPNLRELGL 250

Query: 637 HYLNLSTNQFIQEI-PIKLEKLIHLSELDLSHNFLGKEIPSQIC-----NMRSLEMLNLS 690
           +   LS       +      + I L  L L +N +  +    +       M  L  L L+
Sbjct: 251 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 310

Query: 691 HNNLSDFIPRCFEEMNGLL 709
            N  S+      +E+  + 
Sbjct: 311 GNRFSE-EDDVVDEIREVF 328

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 639 LNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKE----IPSQICNMRSLEMLNLSHNNL 694
           L+  T +  + +   L +   + E+ LS N +G E    +   I + + LE+   S    
Sbjct: 12  LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71

Query: 695 SDFIPRCFEEMNGLLYIDISYNELH 719
                   E +  LL   +   +LH
Sbjct: 72  GRVKDEIPEALRLLLQALLKCPKLH 96

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 41/353 (11%), Positives = 86/353 (24%), Gaps = 37/353 (10%)

Query: 275 KSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG----SIPSEIGNLKSLSGLEL 330
           KSL +  +       S+   L    ++  + L  N++       +   I + K L   E 
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 331 ADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHS 390
           +D                          +   IP  +  L          + +  S    
Sbjct: 67  SDIFT---------------------GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 105

Query: 391 LGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLAL 450
                   I +L  +T L  +      L      ++       +++    N   +  +  
Sbjct: 106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 165

Query: 451 YDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESF 510
             N L     +E     +   L  +   +Q  I        L+        L     +  
Sbjct: 166 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 225

Query: 511 GIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLS 570
                 +         +  +         L     +             ++  L  + L 
Sbjct: 226 TFTHLGSSALAIALKSWPNLRELGLNDCLLS----ARGAAAVVDAFSKLENIGLQTLRLQ 281

Query: 571 ANHIIGKIPSEI-----GKLSSLIKLILRRNQL--FGQLPSELGSLIQLEYLD 616
            N I       +      K+  L+ L L  N+      +  E+  +       
Sbjct: 282 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 334

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 9e-04
 Identities = 46/335 (13%), Positives = 97/335 (28%), Gaps = 30/335 (8%)

Query: 180 SLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSG----SIPSEIGNLKSLSSLALG 235
           SL   A+T+   K S+   L    ++  + L  N++       +   I + K L      
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 236 NN---KLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP 292
           +    ++   IP  L  L        + ++   S  +     +   I  L ++     + 
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 293 LSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAF 352
           L    L       +       ++  +  N   L  +    N L  +        T  +  
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-ENGSMKEWAKTFQSHR 186

Query: 353 YLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIP 412
            L+   +  +     G    L        +L                    ++    ++ 
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD----------NTFTHLGSSALA 236

Query: 413 REIGNLKSLFELQLGDNKLSNSISHSLGN------LTHMTLLALYDNALSGVIPEEL--- 463
             + +  +L EL L D  LS   + ++ +         +  L L  N +       L   
Sbjct: 237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 296

Query: 464 --GNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLR 496
               +  L  L L+ N+       +  +  +   R
Sbjct: 297 IDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 331

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 42/327 (12%), Positives = 86/327 (26%), Gaps = 55/327 (16%)

Query: 468 KLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCN----ISESFGIHPKLTFIDLSH 523
            L +  ++    +     L    ++  + L+ N +       +SE+      L   + S 
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 524 N----------NFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANH 573
                           +     KCP L T  +S N    +    + D    H        
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 574 IIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNL 633
               +  + G   +     L  N+     P     +     L+  S +      +S   L
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 634 VKLHYLNLSTNQ------------------------------FIQEIPIKLEKLIHLSEL 663
             +  +                                        + I L+   +L EL
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248

Query: 664 DLSHNFLGKEIPSQICNM------RSLEMLNLSHNNLSDFIPRCFEE-----MNGLLYID 712
            L+   L     + + +         L+ L L +N +     R  +      M  LL+++
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 713 ISYNELHGPIPNSTAFSDALMEALQGN 739
           ++ N             +      +G 
Sbjct: 309 LNGNRFSEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 45/323 (13%), Positives = 89/323 (27%), Gaps = 33/323 (10%)

Query: 133 LKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGP----IPHEVGGLSSLNELALTS 188
           LK   ++       +   +     ++ + L  N +       +   +     L     + 
Sbjct: 10  LKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 189 NF---LKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPL 245
            F   +K  IP +L  L    +     +++  S  +     +      L  +     + L
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 246 FLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLY 305
               L       +       ++  +  N   L  +  G NRL                L 
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 306 LYTNSLSGSIPSEIGNLKSLSGLE-------------LADNELSSSIPHYLGNLTNLAAF 352
                +   I  E      L GL                 +  SS++   L +  NL   
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248

Query: 353 YLYKNSLSGSIPSEIGN------LKSLSNLDLSENKLSGSIPHSL-----GNLTNLAILY 401
            L    LS    + + +         L  L L  N++      +L       + +L  L 
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 402 LHSNTLLGSIPREIGNLKSLFEL 424
           L+ N         +  ++ +F  
Sbjct: 309 LNGN-RFSEEDDVVDEIREVFST 330

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 0.003
 Identities = 46/312 (14%), Positives = 91/312 (29%), Gaps = 17/312 (5%)

Query: 227 KSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFS----SSIPSEIGNLKSLSILEL 282
           KSL   A+       S+   L    ++  + L  N+        +   I + K L I E 
Sbjct: 8   KSLKLDAITTEDE-KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 283 GEN---RLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSI 339
            +    R+   IP +L  L          +++  S  +     +      L+ +     +
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 340 PHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAI 399
             +   L   A   + +     ++  +  N   L ++    N+L                
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 400 LYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVI 459
           L      +   I  E      L  L          +  +       + LA+   +   + 
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 460 PEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISES-----FGIHP 514
              L +     +L+           +      L  LRL  N +  +   +         P
Sbjct: 247 ELGLND----CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302

Query: 515 KLTFIDLSHNNF 526
            L F++L+ N F
Sbjct: 303 DLLFLELNGNRF 314

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 3e-06
 Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 5/138 (3%)

Query: 601 QLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL 660
           QL   +          L    L +     L        LN   +     + I  E +  L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGLRS--DPDLVAQNIDVVLNRR-SSMAATLRIIEENIPEL 67

Query: 661 SELDLSHNFLGK--EIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
             L+LS+N L +  ++ S +    +L++LNLS N L         +   L  + +  N L
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 719 HGPIPNSTAFSDALMEAL 736
                + + +  A+ E  
Sbjct: 128 SDTFRDQSTYISAIRERF 145

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 5/137 (3%)

Query: 290 SIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNL 349
            + L +    +     L    L      ++        L    + +++++     N+  L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRRSS-MAATLRIIEENIPEL 67

Query: 350 AAFYLYKNSLSG--SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL 407
            +  L  N L     + S +    +L  L+LS N+L             L  L+L  N+L
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 408 LGSIPREIGNLKSLFEL 424
             +   +   + ++ E 
Sbjct: 128 SDTFRDQSTYISAIRER 144

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 8e-06
 Identities = 26/213 (12%), Positives = 52/213 (24%), Gaps = 5/213 (2%)

Query: 443 THMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHL 502
            +   L      L  +          L  + +S N +   I             +     
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 503 TCNISESFGIHPKLTFIDLSHNNFYG-----QISSDWGKCPNLGTFDVSVNNIIGSLPPE 557
              +  +      L  +     +  G      +         L     ++N         
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 558 IGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDL 617
           +G S +  ++ L+ N I                 +   N L                LD+
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208

Query: 618 SSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEI 650
           S  R+ +     L NL KL   +    + +  +
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 36/233 (15%), Positives = 68/233 (29%), Gaps = 10/233 (4%)

Query: 470 TMLTLSDNQLQGSIPNLRNL-TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG 528
            +    ++++   IP   +L  N I LR     L      +F     L  I++S N+   
Sbjct: 11  RVFLCQESKVT-EIP--SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 529 QISSDWGKCPNLGTFDVSV--NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLS 586
            I +D                NN++   P    +   L  + +S   I            
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 587 SLIKLILRR--NQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN 644
             + L ++   N    +  S +G   +   L L+ N +      +              N
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 645 QFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDF 697
              +              LD+S   +       + N++ L   +    NL   
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKL 238

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 8e-05
 Identities = 27/222 (12%), Positives = 52/222 (23%), Gaps = 6/222 (2%)

Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 253
            IP  L    N   L      L             L  + +  N +   I   + +    
Sbjct: 22  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 254 DTLYL----RNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTN 309
                     N  + +    +        ++     +    +         L  +    N
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 310 SLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN 369
             +    S +G       L L  N +                     N+L          
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 370 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSI 411
                 LD+S  ++     + L NL  L     ++   L ++
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 32/251 (12%), Positives = 58/251 (23%), Gaps = 22/251 (8%)

Query: 71  CAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNL 130
           C+     C          +T        IP  +        L                  
Sbjct: 8   CSNRVFLCQES------KVTE-------IPSDL--PRNAIELRFVLTKLRVIQKGAFSGF 52

Query: 131 SMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNF 190
             L+ + +S N     I   +            +   +    +     +  N   L  + 
Sbjct: 53  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 112

Query: 191 LKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSS----LALGNNKLCGSIPLF 246
                 P +  + +L  + L           E  +   LS     L L  N +       
Sbjct: 113 TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCA 172

Query: 247 LGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYL 306
                  +     NN+                IL++   R++      L NL  L     
Sbjct: 173 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

Query: 307 YTNSLSGSIPS 317
           Y       +P+
Sbjct: 233 YNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 27/223 (12%), Positives = 69/223 (30%), Gaps = 7/223 (3%)

Query: 404 SNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEEL 463
             + +  IP ++   ++  EL+    KL      +      +  + +  N +  VI  ++
Sbjct: 16  QESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 73

Query: 464 GNLVKLTMLTLS---DNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFID 520
            + +           +N L  +    +NL NL  L ++   +            +   +D
Sbjct: 74  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 133

Query: 521 LSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQ--LHVIDLSANHIIGKI 578
           +  N     I  +     +  +  + +N            +      +     N++    
Sbjct: 134 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELP 193

Query: 579 PSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNR 621
                  S  + L + R ++       L +L +L      + +
Sbjct: 194 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 28/239 (11%), Positives = 73/239 (30%), Gaps = 10/239 (4%)

Query: 252 NLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL 311
           +      + +  +  IPS++   ++   L     +L      +     +L+ + +  N +
Sbjct: 9   SNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 312 SGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLS----GSIPSEI 367
              I +++ +          +   +    +           YL  ++        +    
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 368 GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLG 427
              K L ++  + N  +      +G      IL+L+ N +           +        
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 428 DNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNL 486
           +N L    +      +   +L +    +  +    L NL KL   +  + +    +P L
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPTL 241

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 27/136 (19%), Positives = 43/136 (31%), Gaps = 7/136 (5%)

Query: 101 PQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEAL 160
            Q  N  + + LDL        I      L     +  S N+   R       L  ++ L
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTL 68

Query: 161 HLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG-SIPPSLGNLTNLAILYLHN---NSLS 216
            +  N++          L  L EL LT+N L        L +L +L  L +      +  
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 217 GSIPSEIGNLKSLSSL 232
                 I  +  +  L
Sbjct: 129 HYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 643 TNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCF 702
           T + I++   +    +   ELDL    +   I +    +   + ++ S N +       F
Sbjct: 4   TAELIEQAA-QYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKL--DGF 59

Query: 703 EEMNGLLYIDISYNELHGPIPN 724
             +  L  + ++ N +      
Sbjct: 60  PLLRRLKTLLVNNNRICRIGEG 81

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 8/143 (5%)

Query: 334 ELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGN 393
           EL      Y  N        L    +   I +    L     +D S+N++          
Sbjct: 6   ELIEQAAQYT-NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--L 61

Query: 394 LTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN----SISHSLGNLTHMTLLA 449
           L  L  L +++N +          L  L EL L +N L          SL +LT++ +L 
Sbjct: 62  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 121

Query: 450 LYDNALSGVIPEELGNLVKLTML 472
                        +  + ++ +L
Sbjct: 122 NPVTNKKHYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 26/148 (17%), Positives = 59/148 (39%), Gaps = 9/148 (6%)

Query: 569 LSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPR 628
           L+A  +I +            +L LR  ++   + +   +L Q + +D S N +      
Sbjct: 3   LTAE-LIEQAAQYTN-AVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKLDGF 59

Query: 629 SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGK----EIPSQICNMRSL 684
               L +L  L ++ N+  +      + L  L+EL L++N L +    +  + + ++  L
Sbjct: 60  P--LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 117

Query: 685 EMLNLSHNNLSDFIPRCFEEMNGLLYID 712
            +L     N   +      ++  +  +D
Sbjct: 118 CILRNPVTNKKHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 7e-04
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 426 LGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN 485
           L    +  +  ++  N      L L    +  VI      L +   +  SDN+++  +  
Sbjct: 3   LTAELIEQAAQYT--NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDG 58

Query: 486 LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFY 527
              L  L  L +N N +           P LT + L++N+  
Sbjct: 59  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 100

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 23/164 (14%), Positives = 59/164 (35%), Gaps = 10/164 (6%)

Query: 580 SEIGKLSSLIKLILRRNQLFGQLP------SELGSLIQLEYLDLSSNRLSNSIPRSLGNL 633
               +  S++     + +L G +P      + L +L   ++L LS+N +   I  SL  +
Sbjct: 12  RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGM 69

Query: 634 VKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNN 693
             L  L+    + + +    L+ +    E           +      +    +   ++  
Sbjct: 70  ENLRILS--LGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKI 127

Query: 694 LSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQ 737
            +         ++ L  + ++ N L+     + A S+  +E ++
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	869
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.41
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.16
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.14
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.56
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.42
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.95
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.71
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.35
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.14
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	95.87
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	95.77

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.1e-40  Score=355.36  Aligned_cols=291  Identities=31%  Similarity=0.568  Sum_probs=208.0

Q ss_pred             CCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCC--ccCceeeCCC---CCEEEEeCCCCCcccc--cCCcCCCC
Q 002896           33 DSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPC--AWFGIHCNHV---GRVNSINLTNVNQIFG--IIPPQIGN  105 (869)
Q Consensus        33 ~~~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~~~~~~~c--~w~gv~c~~~---~~v~~l~l~~~~~l~~--~~~~~l~~  105 (869)
                      |.++|++||++||+++.+ |  ..+++|.    .++|||  .|.||+|+..   +||++++|++.+ +.|  .+|+.+++
T Consensus         3 c~~~e~~aLl~~k~~~~~-~--~~l~sW~----~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~-l~g~~~lp~~l~~   74 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGN-P--TTLSSWL----PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN-LPKPYPIPSSLAN   74 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTC-C--GGGTTCC----TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCC-CSSCEECCGGGGG
T ss_pred             CCHHHHHHHHHHHHHCCC-C--CcCCCCC----CCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCC-CCCCCCCChHHhc
Confidence            789999999999999976 3  3689998    677999  4999999853   489999999887 776  47788888


Q ss_pred             CCCCcEEeCCC-CCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCcee
Q 002896          106 ISKLKYLDLSS-NSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNEL  184 (869)
Q Consensus       106 l~~L~~L~Ls~-n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  184 (869)
                      |++|++|+|++ |+++|.+|++|+++++|++|+|++|++.+..|..+..+.+|+++++++|.+.+.+|..+++++.|+++
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccccee
Confidence            88888888876 77888888888888888888888888887777777778888888888887777777777777777777


Q ss_pred             eccCcccCCCCCCcccccccc-ceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCC
Q 002896          185 ALTSNFLKGSIPPSLGNLTNL-AILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF  263 (869)
Q Consensus       185 ~L~~n~l~~~~~~~l~~l~~L-~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  263 (869)
                      ++++|.+.+.+|..+..+.++ +.+++++|.+++..|..+..+..+ .++++.+...+.+|..+..+++++.+++++|.+
T Consensus       155 ~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l  233 (313)
T d1ogqa_         155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             eccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence            777777777777777666664 566677777766666666655433 566666666666666666666666666666666


Q ss_pred             CCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCc
Q 002896          264 SSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNE  334 (869)
Q Consensus       264 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~  334 (869)
                      .+.+| .+..+++|+.|++++|+++|.+|..++++++|++|+|++|+++|.+|. ++++++|+.+++++|+
T Consensus       234 ~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         234 AFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             ccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            55443 355555555555555555555555555555555555555555555553 3445555555555554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1.9e-30  Score=275.50  Aligned_cols=259  Identities=25%  Similarity=0.439  Sum_probs=224.8

Q ss_pred             CCCEEECcCCcCcc--ccCccccCCCCCCEEeCCC-CcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEE
Q 002896          491 NLIRLRLNRNHLTC--NISESFGIHPKLTFIDLSH-NNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVI  567 (869)
Q Consensus       491 ~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~ls~-n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L  567 (869)
                      .++.|+++++.+.+  .+|..++.+++|++|++++ |+++|.+|..++++++|++|++++|++.+..+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            45566666666655  4567788888888888876 78888888888888888888888888888888888888889999


Q ss_pred             EccCCcccccCCcccccCcccceeeccCccccccCcccccCCccc-cccccccccccccccccccCCCCCCeeeCcCCcC
Q 002896          568 DLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQL-EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQF  646 (869)
Q Consensus       568 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  646 (869)
                      ++++|.+.+.+|..+.+++.|+.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+..+ .++++++..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            999998888888889999999999999999998888888888776 889999999999988888877654 799999999


Q ss_pred             CcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCc
Q 002896          647 IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNST  726 (869)
Q Consensus       647 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~  726 (869)
                      .+.+|..+..+++|+.+++++|.+.+.+| .++.+++|+.|+|++|+++|.+|..|+++++|++||+++|+|+|.+|..+
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~  288 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             ccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcc
Confidence            99999999999999999999999988776 58889999999999999999999999999999999999999999999887


Q ss_pred             cccccchhhhcCCCCCCCCCCCCCCCC
Q 002896          727 AFSDALMEALQGNEGLCGDIKGFQSCK  753 (869)
Q Consensus       727 ~~~~~~~~~~~gn~~lc~~~~~~~~C~  753 (869)
                      .+.......+.||+.+||. | .+.|.
T Consensus       289 ~L~~L~~l~l~~N~~l~g~-p-lp~c~  313 (313)
T d1ogqa_         289 NLQRFDVSAYANNKCLCGS-P-LPACT  313 (313)
T ss_dssp             TGGGSCGGGTCSSSEEEST-T-SSCCC
T ss_pred             cCCCCCHHHhCCCccccCC-C-CCCCC
Confidence            7888888889999999997 3 35673

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=7.3e-27  Score=255.70  Aligned_cols=356  Identities=24%  Similarity=0.322  Sum_probs=224.5

Q ss_pred             ecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCC
Q 002896          305 YLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLS  384 (869)
Q Consensus       305 ~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  384 (869)
                      .+..+.+++.+.  ...+.+|++|+++++.++..  ..+..+++|++|++++|++++..  .+.++++|++|++++|++.
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccc
Confidence            344444444332  23456677777777766542  34556666777777777666432  2666666666666666665


Q ss_pred             CCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCcccc
Q 002896          385 GSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELG  464 (869)
Q Consensus       385 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  464 (869)
                      +..  .++.+++|+.|+++++.+++..+  ......+.......+.+..................               
T Consensus       102 ~i~--~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------------  162 (384)
T d2omza2         102 DIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG---------------  162 (384)
T ss_dssp             CCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE---------------
T ss_pred             ccc--ccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccc---------------
Confidence            432  25566666666666666554322  22233444444444443322221111111111111               


Q ss_pred             CCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEE
Q 002896          465 NLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFD  544 (869)
Q Consensus       465 ~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~  544 (869)
                               ......    ..+...+.........|...  ....+..+++++.+++++|.+++..|  +..+++|++|+
T Consensus       163 ---------~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~  225 (384)
T d2omza2         163 ---------NQVTDL----KPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELS  225 (384)
T ss_dssp             ---------ESCCCC----GGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred             ---------cccchh----hhhccccccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEE
Confidence                     111100    12223333333444433322  22344556677777777777765543  34567777788


Q ss_pred             ccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccc
Q 002896          545 VSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSN  624 (869)
Q Consensus       545 ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  624 (869)
                      +++|.++..  ..+..+++|+.|++++|.+++..  .++.+++|+.|++++|++.+..+  +..++.++.+++++|.+.+
T Consensus       226 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~  299 (384)
T d2omza2         226 LNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED  299 (384)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC
T ss_pred             CCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCc--ccccccccccccccccccc
Confidence            877777642  35677788888888888877543  36778888888888888876543  5578888888999888876


Q ss_pred             cccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhc
Q 002896          625 SIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEE  704 (869)
Q Consensus       625 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  704 (869)
                      .  ..+..+++++.|++++|++++..+  +..+++|++|++++|++++. + .++++++|++|++++|++++.+|  +.+
T Consensus       300 ~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l~~  371 (384)
T d2omza2         300 I--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV-S-SLANLTNINWLSAGHNQISDLTP--LAN  371 (384)
T ss_dssp             C--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG--GTT
T ss_pred             c--cccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCC-h-hHcCCCCCCEEECCCCcCCCChh--hcc
Confidence            3  357888899999999999887643  78899999999999999753 3 58899999999999999998765  888


Q ss_pred             CCCCcEEEccCC
Q 002896          705 MNGLLYIDISYN  716 (869)
Q Consensus       705 l~~L~~L~ls~N  716 (869)
                      +++|+.|++++|
T Consensus       372 l~~L~~L~L~~N  383 (384)
T d2omza2         372 LTRITQLGLNDQ  383 (384)
T ss_dssp             CTTCSEEECCCE
T ss_pred             CCCCCEeeCCCC
Confidence            999999999988

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=4.4e-26  Score=249.45  Aligned_cols=358  Identities=27%  Similarity=0.350  Sum_probs=232.0

Q ss_pred             ccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCc
Q 002896          279 ILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS  358 (869)
Q Consensus       279 ~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~  358 (869)
                      ...++.+.+++.+.  ...+.+|++|+++++.++. + +.+..+++|++|++++|++++..+  ++++++|++|++++|.
T Consensus        26 ~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~   99 (384)
T d2omza2          26 KTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ   99 (384)
T ss_dssp             HHHTTCSSTTSEEC--HHHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             HHHhCCCCCCCccC--HHHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccc
Confidence            34566666665544  3457789999999999984 3 467889999999999999997643  8999999999999999


Q ss_pred             CCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCccccccc
Q 002896          359 LSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHS  438 (869)
Q Consensus       359 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  438 (869)
                      +.+..  .++.+++|+.|+++++.+++..+  ......+.......+.+....+................     .....
T Consensus       100 i~~i~--~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~  170 (384)
T d2omza2         100 IADIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKP  170 (384)
T ss_dssp             CCCCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGG
T ss_pred             ccccc--ccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccc-----chhhh
Confidence            98653  48899999999999999886543  33456777777777776543322221111111111111     11122


Q ss_pred             ccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCE
Q 002896          439 LGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTF  518 (869)
Q Consensus       439 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  518 (869)
                      +.............|...  ....+..+++++.+++++|.+.+..+ ...+++|++|++++|                  
T Consensus       171 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n------------------  229 (384)
T d2omza2         171 LANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN------------------  229 (384)
T ss_dssp             GTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSS------------------
T ss_pred             hccccccccccccccccc--cccccccccccceeeccCCccCCCCc-ccccCCCCEEECCCC------------------
Confidence            334444444444444432  23444556666666666666554322 233444555555444                  


Q ss_pred             EeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccc
Q 002896          519 IDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL  598 (869)
Q Consensus       519 L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  598 (869)
                            .+++.  ..+..+++|+.+++++|.+++..  .+..+++|++|++++|++++..  .+..++.++.+.++.|.+
T Consensus       230 ------~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l  297 (384)
T d2omza2         230 ------QLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQL  297 (384)
T ss_dssp             ------CCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCC
T ss_pred             ------CCCCc--chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccccccccccccccc
Confidence                  44331  23444555555555555555432  2455566666666666665432  355666667777777766


Q ss_pred             cccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhh
Q 002896          599 FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQI  678 (869)
Q Consensus       599 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  678 (869)
                      .+.  ..+..+++++.|++++|++++..  .+..+++|++|++++|++++ ++ .++++++|++|++++|++++..|  +
T Consensus       298 ~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l  369 (384)
T d2omza2         298 EDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--L  369 (384)
T ss_dssp             SCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--G
T ss_pred             ccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--h
Confidence            543  23557777888888888887653  37778888888888888765 33 57888888888888888887765  7


Q ss_pred             cCCCCCcEEeCCCC
Q 002896          679 CNMRSLEMLNLSHN  692 (869)
Q Consensus       679 ~~l~~L~~L~Ls~N  692 (869)
                      .++++|+.|+|++|
T Consensus       370 ~~l~~L~~L~L~~N  383 (384)
T d2omza2         370 ANLTRITQLGLNDQ  383 (384)
T ss_dssp             TTCTTCSEEECCCE
T ss_pred             ccCCCCCEeeCCCC
Confidence            88888888888887

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=2.1e-24  Score=227.72  Aligned_cols=245  Identities=25%  Similarity=0.351  Sum_probs=156.8

Q ss_pred             CccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcc
Q 002896           71 CAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQ  150 (869)
Q Consensus        71 c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~  150 (869)
                      |.|++|.|+..+            ++ .+|+.+.  +.+++|+|++|+++...+.+|.++++|++|++++|.+....|..
T Consensus        10 c~~~~~~C~~~~------------L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~   74 (305)
T d1xkua_          10 CHLRVVQCSDLG------------LE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA   74 (305)
T ss_dssp             EETTEEECTTSC------------CC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred             ecCCEEEecCCC------------CC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhh
Confidence            789999996321            33 4566554  68999999999998655567899999999999999998777888


Q ss_pred             cCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCC--CCCCccccCCCC
Q 002896          151 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLS--GSIPSEIGNLKS  228 (869)
Q Consensus       151 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~  228 (869)
                      |.++++|++|++++|+++ .+|..+  ...++.|++..|.+.+..+..+.....++.++...|...  ...+..+..+++
T Consensus        75 f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~  151 (305)
T d1xkua_          75 FAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK  151 (305)
T ss_dssp             TTTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred             hhCCCccCEecccCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccc
Confidence            999999999999999887 445433  356777777777776655555555666666666655422  223344555666


Q ss_pred             CCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeeccc
Q 002896          229 LSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYT  308 (869)
Q Consensus       229 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~  308 (869)
                      |+++++++|.++. +|..+  +++|++|++++|..++..+..+.+++.+++|++++|.+.+..+..+.++++|++|+|++
T Consensus       152 L~~l~l~~n~l~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~  228 (305)
T d1xkua_         152 LSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN  228 (305)
T ss_dssp             CCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred             cCccccccCCccc-cCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccc
Confidence            6666666665542 33222  34555666665555555555555555555555555555555555555555555555555


Q ss_pred             ccccCCCCCcccCCCCCCeEeccCCcccc
Q 002896          309 NSLSGSIPSEIGNLKSLSGLELADNELSS  337 (869)
Q Consensus       309 n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~  337 (869)
                      |+++ .+|.++..+++|++|++++|+++.
T Consensus       229 N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         229 NKLV-KVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             SCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             cccc-ccccccccccCCCEEECCCCccCc
Confidence            5554 334455555555555555555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=227.00  Aligned_cols=212  Identities=22%  Similarity=0.204  Sum_probs=168.7

Q ss_pred             CCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEcc-CCcccccCCcccccCcccceeec
Q 002896          515 KLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLS-ANHIIGKIPSEIGKLSSLIKLIL  593 (869)
Q Consensus       515 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls-~n~l~~~~p~~l~~l~~L~~L~L  593 (869)
                      .+++|+|++|+++...+..|.++++|++|++++|++.+..+..+..++.++.++.. .+.+....+..+.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            45666666666665555556666666666666666666555666666666666654 34455455666777777777777


Q ss_pred             cCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCc
Q 002896          594 RRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKE  673 (869)
Q Consensus       594 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  673 (869)
                      ++|.+....+..+....+|+.+++++|.+++..+..|..+++|+.|++++|++.+..+..|.++++|+.+++++|++++.
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence            77777777777777888888889999988877778888899999999999999888888899999999999999999998


Q ss_pred             hhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCc
Q 002896          674 IPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNST  726 (869)
Q Consensus       674 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~  726 (869)
                      .|..|..+++|++||+++|++++..|..|+.+++|++|++++|+++|.|+..+
T Consensus       193 ~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~  245 (284)
T d1ozna_         193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP  245 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH
T ss_pred             ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchH
Confidence            89999999999999999999999999999999999999999999999987543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=2.6e-23  Score=219.16  Aligned_cols=262  Identities=23%  Similarity=0.264  Sum_probs=139.2

Q ss_pred             CCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcC
Q 002896          420 SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNR  499 (869)
Q Consensus       420 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~  499 (869)
                      ++++|++++|+++...+..|.++++|+.|++++|.+....|..|.++++|++|++++|++......  ....++.|++.+
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~--~~~~l~~L~~~~  109 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELRVHE  109 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS--CCTTCCEEECCS
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc--hhhhhhhhhccc
Confidence            455555555555544444455555555555555555555555555555555555555555432221  223556666666


Q ss_pred             CcCccccCccccCCCCCCEEeCCCCccc--ccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCccccc
Q 002896          500 NHLTCNISESFGIHPKLTFIDLSHNNFY--GQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGK  577 (869)
Q Consensus       500 n~l~~~~~~~~~~~~~L~~L~ls~n~l~--~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  577 (869)
                      |.+....+..+.....+..++...|...  ...+..+..+++|+.+++++|.+.. +|..+  +++|+.|          
T Consensus       110 n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~~L~~L----------  176 (305)
T d1xkua_         110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTEL----------  176 (305)
T ss_dssp             SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEE----------
T ss_pred             cchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCccc--CCccCEE----------
Confidence            6665555555555556666666555432  2223334444555555555554432 22211  2344444          


Q ss_pred             CCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcc
Q 002896          578 IPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKL  657 (869)
Q Consensus       578 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  657 (869)
                                    ++++|...+..+..|..++.+++|++++|.+.+..+..+.++++|++|+|++|+++ .+|.++..+
T Consensus       177 --------------~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l  241 (305)
T d1xkua_         177 --------------HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH  241 (305)
T ss_dssp             --------------ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             --------------ECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccc
Confidence                          44444444444444555555555555555555555555555666666666666554 335556666


Q ss_pred             cccccccccccccCCchhhh------hcCCCCCcEEeCCCCCCC--CCcchhhhcCCCCcEE
Q 002896          658 IHLSELDLSHNFLGKEIPSQ------ICNMRSLEMLNLSHNNLS--DFIPRCFEEMNGLLYI  711 (869)
Q Consensus       658 ~~L~~L~Ls~N~l~~~~p~~------l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L  711 (869)
                      ++|++|+|++|+|+......      +..+++|+.|+|++|++.  ...|.+|.-+.....+
T Consensus       242 ~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~~  303 (305)
T d1xkua_         242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV  303 (305)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred             cCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCccc
Confidence            66666666666665443332      235677888888888876  3456666655444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-23  Score=219.16  Aligned_cols=234  Identities=22%  Similarity=0.180  Sum_probs=187.8

Q ss_pred             CCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEcc-CCCCCCCCCcCcCCCCCCCEEE
Q 002896          490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVS-VNNIIGSLPPEIGDSSQLHVID  568 (869)
Q Consensus       490 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls-~n~l~~~~p~~l~~l~~L~~L~  568 (869)
                      +++++|++++|+++...+..|..++.|++|++++|++.+..+..+..+..+..+... .+.+....+..+.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            456777777777777777778888888888888888887777777778888887765 4455555577788888888888


Q ss_pred             ccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCc
Q 002896          569 LSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ  648 (869)
Q Consensus       569 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  648 (869)
                      +++|.+....+..+...++|+.+++++|++++..+..|..+++|+.|++++|++++..+..|.++++|+.+++++|++++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            88888877666777788888888888888888778888888899999999999988888889999999999999999998


Q ss_pred             ccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCC
Q 002896          649 EIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPN  724 (869)
Q Consensus       649 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~  724 (869)
                      ..|..|.++++|++|++++|++.+..|..|+.+++|++|++++|++...-+.. .-...++.+....+++.|..|.
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~  266 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ  266 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred             cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCch
Confidence            88889999999999999999999888899999999999999999988643311 1112345566677788877663

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.5e-22  Score=208.24  Aligned_cols=182  Identities=24%  Similarity=0.183  Sum_probs=136.0

Q ss_pred             CCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccc
Q 002896          539 NLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLS  618 (869)
Q Consensus       539 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  618 (869)
                      ++++|+|++|++++..+..|..+++|++|+|++|+++.. | .++.+++|++|++++|++.+. +..+..+++|++|+++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCSSCCSSC-CCCTTTCTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccccccccccc-cccccccccccccccc
Confidence            445555555555443334455555555555555555422 2 234566666666666666543 4456677788888888


Q ss_pred             cccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCc
Q 002896          619 SNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFI  698 (869)
Q Consensus       619 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  698 (869)
                      +|.+.+..+..+..+.+++.|++++|.+.+..+..+..++.|+.|++++|++++..++.|..+++|++|||++|+|+ .+
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l  187 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             ccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-cc
Confidence            88887777778888888999999999888877788888899999999999998888888999999999999999999 56


Q ss_pred             chhhhcCCCCcEEEccCCcccccCCC
Q 002896          699 PRCFEEMNGLLYIDISYNELHGPIPN  724 (869)
Q Consensus       699 p~~l~~l~~L~~L~ls~N~l~g~~p~  724 (869)
                      |..+..+++|++|++++||+.|.|..
T Consensus       188 p~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             ChhHCCCCCCCEEEecCCCCCCCcch
Confidence            77777889999999999999998763

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.1e-21  Score=196.64  Aligned_cols=193  Identities=28%  Similarity=0.316  Sum_probs=117.3

Q ss_pred             EeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCC
Q 002896           87 INLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQ  166 (869)
Q Consensus        87 l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~  166 (869)
                      ++.++.+ ++ .+|+.+.  +++++|+|++|.+++..+.+|.++++|++|+|++|.++ .+| .++.+++|++|++++|+
T Consensus        15 v~C~~~~-L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~   88 (266)
T d1p9ag_          15 VNCDKRN-LT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQ   88 (266)
T ss_dssp             EECTTSC-CS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSC
T ss_pred             EEccCCC-CC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccccccc
Confidence            3444444 54 3555553  46777777777777555566777777777777777766 333 34567777777777777


Q ss_pred             CCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccc
Q 002896          167 LSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLF  246 (869)
Q Consensus       167 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  246 (869)
                      +++ .+..+.++++|++|++++|.+.+..+..+..+.++++|++++|.+....+..+..+++|+++++++|++++..+..
T Consensus        89 l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~  167 (266)
T d1p9ag_          89 LQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL  167 (266)
T ss_dssp             CSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT
T ss_pred             ccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccc
Confidence            663 3455666666666666666666555555566666666666666665554555555566666666666665555555


Q ss_pred             cCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccC
Q 002896          247 LGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRL  287 (869)
Q Consensus       247 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~  287 (869)
                      |..+++|++|+|++|+++ .+|..+..+++|+.|+|++|.+
T Consensus       168 ~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         168 LNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             TTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             cccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            555555666666665555 4555555555555555555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=3.1e-16  Score=167.96  Aligned_cols=95  Identities=28%  Similarity=0.363  Sum_probs=48.8

Q ss_pred             CCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEcc
Q 002896          324 SLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH  403 (869)
Q Consensus       324 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  403 (869)
                      ++++|+++++.++. +|+.   .++|++|++++|+++ .+|..   ..+|+.|++++|+++. +++ +  .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSD-L--PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCS-C--CTTCCEEECC
T ss_pred             CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhh-h--cccccccccc
Confidence            46666777666653 3432   345666666666665 34433   2456666666665542 121 1  1245555555


Q ss_pred             CCccccccChhhhCCCCCCccccCCCcCc
Q 002896          404 SNTLLGSIPREIGNLKSLFELQLGDNKLS  432 (869)
Q Consensus       404 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  432 (869)
                      +|.+. .+|. ++.+++|+.|+++++.+.
T Consensus       107 ~n~l~-~lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         107 NNQLE-KLPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             SSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred             ccccc-cccc-hhhhccceeecccccccc
Confidence            55554 2332 344555555555555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.74  E-value=8.6e-16  Score=164.41  Aligned_cols=137  Identities=29%  Similarity=0.333  Sum_probs=65.1

Q ss_pred             CCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeecc
Q 002896          108 KLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALT  187 (869)
Q Consensus       108 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  187 (869)
                      ++++|||++++++ .+|+.   +++|++|+|++|+++ .+|..+   .+|++|++++|.++ .++. +  .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCS-C--CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhh-h--cccccccccc
Confidence            4556666666655 34532   345566666666655 445432   34556666665554 2221 0  1235555555


Q ss_pred             CcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCC
Q 002896          188 SNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFS  264 (869)
Q Consensus       188 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  264 (869)
                      +|.+... |. ++.+++|++|+++++.+.... .   ....+..+.+..+...  .+..+..++.++.+++.+|...
T Consensus       107 ~n~l~~l-p~-~~~l~~L~~L~l~~~~~~~~~-~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         107 NNQLEKL-PE-LQNSSFLKIIDVDNNSLKKLP-D---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             SSCCSSC-CC-CTTCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccccc-cc-hhhhccceeeccccccccccc-c---ccccccchhhcccccc--ccccccccccceeccccccccc
Confidence            5555432 22 344555555555555544221 1   1234444544443332  1223444555555555555443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.4e-17  Score=166.36  Aligned_cols=185  Identities=23%  Similarity=0.321  Sum_probs=115.2

Q ss_pred             CCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeecc
Q 002896          515 KLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILR  594 (869)
Q Consensus       515 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  594 (869)
                      +|+.|++.+|.++..  ..+..+++|++|++++|++++..|  +..+++++++++++|.++. + ..+.++++|+.++++
T Consensus        42 ~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          42 GITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLT  115 (227)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECT
T ss_pred             CcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-c-ccccccccccccccc
Confidence            444444444444322  124444555555555555443322  4555555555555555542 2 235556666666666


Q ss_pred             CccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCch
Q 002896          595 RNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI  674 (869)
Q Consensus       595 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  674 (869)
                      +|...+..+  +...+.++.+.++++.+....  .+..+++|+.|++++|.+.+..  .++++++|++|+|++|++++..
T Consensus       116 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~  189 (227)
T d1h6ua2         116 STQITDVTP--LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDIS  189 (227)
T ss_dssp             TSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG
T ss_pred             cccccccch--hccccchhhhhchhhhhchhh--hhccccccccccccccccccch--hhcccccceecccCCCccCCCh
Confidence            665544322  335666777777777765433  3566778888888888876543  3778888888888888886643


Q ss_pred             hhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccC
Q 002896          675 PSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISY  715 (869)
Q Consensus       675 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  715 (869)
                        .++++++|++|+|++|++++..|  ++++++|++|++++
T Consensus       190 --~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         190 --PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             --GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             --hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence              37888899999999998887643  78888999998873

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.7e-20  Score=205.26  Aligned_cols=377  Identities=21%  Similarity=0.159  Sum_probs=195.9

Q ss_pred             CCCeEeccCCcccccc-CCCCcCccccceeeccCCcCCC----CCccccCCCCCCCEEEccCCcCCCC----CCCCCC-C
Q 002896          324 SLSGLELADNELSSSI-PHYLGNLTNLAAFYLYKNSLSG----SIPSEIGNLKSLSNLDLSENKLSGS----IPHSLG-N  393 (869)
Q Consensus       324 ~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~-~  393 (869)
                      +|+.||+++|++++.. ...+..+++++.|+|++|.++.    .+...+..+++|++|++++|.++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5778888888887632 2335556778888888887763    2334456778888888888877531    122222 2


Q ss_pred             CCcccEEEccCCccccc----cChhhhCCCCCCccccCCCcCccccccccc-----CCCCCCeEEccCCCCcccC----C
Q 002896          394 LTNLAILYLHSNTLLGS----IPREIGNLKSLFELQLGDNKLSNSISHSLG-----NLTHMTLLALYDNALSGVI----P  460 (869)
Q Consensus       394 l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~----~  460 (869)
                      .++|++|++++|.+++.    ++..+..+++|++|++++|.+.......+.     ...................    .
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            34678888888877643    334556677777777777776543222111     1112223333322222110    1


Q ss_pred             ccccCCCCCcEEecCCCcCcCCCC-----Cc-CCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCc
Q 002896          461 EELGNLVKLTMLTLSDNQLQGSIP-----NL-RNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDW  534 (869)
Q Consensus       461 ~~~~~l~~L~~L~Ls~n~l~~~~~-----~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  534 (869)
                      ..+.....++.++++++......-     .+ ........+++..+.+.......                    ....+
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~--------------------~~~~l  222 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD--------------------LCGIV  222 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH--------------------HHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhc--------------------ccccc
Confidence            112233455555555554431100     00 11122334444444332110000                    00111


Q ss_pred             CCCCCCcEEEccCCCCCCC-----CCcCcCCCCCCCEEEccCCccccc----CCcccccCcccceeeccCccccccCccc
Q 002896          535 GKCPNLGTFDVSVNNIIGS-----LPPEIGDSSQLHVIDLSANHIIGK----IPSEIGKLSSLIKLILRRNQLFGQLPSE  605 (869)
Q Consensus       535 ~~~~~L~~L~ls~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~~  605 (869)
                      ...+.++.+++.+|.+...     .+........++.+++++|.+...    ....+...+.++.+++++|.+.......
T Consensus       223 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~  302 (460)
T d1z7xw1         223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL  302 (460)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             cccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            2234444444444433211     112223344555566665555422    1122334555666666666554221111


Q ss_pred             -----ccCCcccccccccccccccccc----ccccCCCCCCeeeCcCCcCCcc----cchhhh-cccccccccccccccC
Q 002896          606 -----LGSLIQLEYLDLSSNRLSNSIP----RSLGNLVKLHYLNLSTNQFIQE----IPIKLE-KLIHLSELDLSHNFLG  671 (869)
Q Consensus       606 -----~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~-~l~~L~~L~Ls~N~l~  671 (869)
                           ......|+.+++++|.++....    ..+...++|++|+|++|++...    ++..+. ..+.|++|+|++|.|+
T Consensus       303 l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~  382 (460)
T d1z7xw1         303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  382 (460)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             hhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCC
Confidence                 1123467777777777654322    2334556788888888877543    233332 3456888888888876


Q ss_pred             Cc----hhhhhcCCCCCcEEeCCCCCCCCCcchhhh-----cCCCCcEEEccCCcccc
Q 002896          672 KE----IPSQICNMRSLEMLNLSHNNLSDFIPRCFE-----EMNGLLYIDISYNELHG  720 (869)
Q Consensus       672 ~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~ls~N~l~g  720 (869)
                      ..    +++.+..+++|++|||++|+++......+.     +...|+++++.+|++..
T Consensus       383 ~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         383 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             hHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            43    455566778888888888888765433332     23468888888887764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.8e-20  Score=209.35  Aligned_cols=393  Identities=21%  Similarity=0.160  Sum_probs=233.2

Q ss_pred             CCCCeeecccccccCCC-CCcccCCCCCCeEeccCCccccc----cCCCCcCccccceeeccCCcCCCC----CccccC-
Q 002896          299 TNLDTLYLYTNSLSGSI-PSEIGNLKSLSGLELADNELSSS----IPHYLGNLTNLAAFYLYKNSLSGS----IPSEIG-  368 (869)
Q Consensus       299 ~~L~~L~L~~n~~~~~~-p~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~-  368 (869)
                      ++|++|+++++++++.. ...+..+++++.|+|++|.++..    ++..+..+++|++|+|++|.++..    +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            36899999999997642 23356688999999999998742    344567889999999999988632    122222 


Q ss_pred             CCCCCCEEEccCCcCCCC----CCCCCCCCCcccEEEccCCccccccChhhh----C-CCCCCccccCCCcCccc----c
Q 002896          369 NLKSLSNLDLSENKLSGS----IPHSLGNLTNLAILYLHSNTLLGSIPREIG----N-LKSLFELQLGDNKLSNS----I  435 (869)
Q Consensus       369 ~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~----~-l~~L~~L~Ls~n~l~~~----~  435 (869)
                      ...+|++|++++|++++.    ++..+..+++|++|++++|.+.......+.    . .................    .
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            235899999999998754    345677889999999999998753222221    1 11223333333332211    1


Q ss_pred             cccccCCCCCCeEEccCCCCcccCC----ccc-cCCCCCcEEecCCCcCcCCC-----CCcCCCCCCCEEECcCCcCccc
Q 002896          436 SHSLGNLTHMTLLALYDNALSGVIP----EEL-GNLVKLTMLTLSDNQLQGSI-----PNLRNLTNLIRLRLNRNHLTCN  505 (869)
Q Consensus       436 ~~~l~~l~~L~~L~l~~n~l~~~~~----~~~-~~l~~L~~L~Ls~n~l~~~~-----~~l~~l~~L~~L~l~~n~l~~~  505 (869)
                      ...+.....++.++++++.......    ..+ ........+++.++.+....     ..+...+.++.+++.+|.+...
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence            2224456788899998887653211    111 22345678888888765321     1234556777777777765321


Q ss_pred             -----cCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCc
Q 002896          506 -----ISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPS  580 (869)
Q Consensus       506 -----~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  580 (869)
                           ....+.....++.+++++|.+.......                    ....+...+.++.+++++|.+......
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~--------------------~~~~l~~~~~l~~l~l~~n~i~~~~~~  301 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGD--------------------LCRVLRAKESLKELSLAGNELGDEGAR  301 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH--------------------HHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             ccchhhccccccccccccccccccccccccccc--------------------ccccccccccccccccccccccccccc
Confidence                 2222334456666666666554321100                    011122333444445544444321111


Q ss_pred             cc-----ccCcccceeeccCccccccCc----ccccCCcccccccccccccccc----ccccc-cCCCCCCeeeCcCCcC
Q 002896          581 EI-----GKLSSLIKLILRRNQLFGQLP----SELGSLIQLEYLDLSSNRLSNS----IPRSL-GNLVKLHYLNLSTNQF  646 (869)
Q Consensus       581 ~l-----~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~----~~~~~-~~l~~L~~L~Ls~N~l  646 (869)
                      .+     ...+.|+.+++++|.+.....    ..+...++|++|+|++|++++.    +++.+ ...+.|++|+|++|++
T Consensus       302 ~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i  381 (460)
T d1z7xw1         302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV  381 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             hhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCC
Confidence            11     122345555555555543322    2233445677788888777542    22233 2456788888888888


Q ss_pred             Ccc----cchhhhcccccccccccccccCCchhhhh----c-CCCCCcEEeCCCCCCCCCcchhh----hcCCCCcEE
Q 002896          647 IQE----IPIKLEKLIHLSELDLSHNFLGKEIPSQI----C-NMRSLEMLNLSHNNLSDFIPRCF----EEMNGLLYI  711 (869)
Q Consensus       647 ~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l----~-~l~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L  711 (869)
                      +..    ++..+..+++|++|+|++|+++......+    . +.+.|+.|++++|.+....+..+    ...++|+.+
T Consensus       382 ~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         382 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             ChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            643    44556677888888888888876544333    2 34479999999999887655544    344566554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=3.9e-17  Score=163.03  Aligned_cols=204  Identities=25%  Similarity=0.350  Sum_probs=122.1

Q ss_pred             eEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcc
Q 002896          447 LLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF  526 (869)
Q Consensus       447 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l  526 (869)
                      .++++.+++++..  .+..+.+|+.|++.+|.+... +.+..+++|++|++++|.+++..+  +..+++++++++     
T Consensus        23 ~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~-----   92 (227)
T d1h6ua2          23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL-----   92 (227)
T ss_dssp             HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEEC-----
T ss_pred             HHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecccc--cccccccccccc-----
Confidence            3455555555542  334556666666666666532 445555555555555555544322  444444444444     


Q ss_pred             cccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccc
Q 002896          527 YGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL  606 (869)
Q Consensus       527 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~  606 (869)
                                         ++|.++. + ..+..+++|+.++++++...+.  ..+...+.++.+.++.+.+....+  +
T Consensus        93 -------------------~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~  147 (227)
T d1h6ua2          93 -------------------SGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--L  147 (227)
T ss_dssp             -------------------CSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--G
T ss_pred             -------------------ccccccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchhhh--h
Confidence                               4444432 1 2344555566666655555432  234455666666666665544322  4


Q ss_pred             cCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcE
Q 002896          607 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEM  686 (869)
Q Consensus       607 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  686 (869)
                      ..+++|+.|++++|.+.+..  .++++++|+.|+|++|++++. + .+.++++|++|+|++|++++..|  ++++++|+.
T Consensus       148 ~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~  221 (227)
T d1h6ua2         148 AGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFI  221 (227)
T ss_dssp             GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCE
T ss_pred             ccccccccccccccccccch--hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCE
Confidence            46667777777777776432  367788888888888887653 2 37788888888888888876543  778888888


Q ss_pred             EeCCC
Q 002896          687 LNLSH  691 (869)
Q Consensus       687 L~Ls~  691 (869)
                      |++++
T Consensus       222 L~lsn  226 (227)
T d1h6ua2         222 VTLTN  226 (227)
T ss_dssp             EEEEE
T ss_pred             EEeeC
Confidence            88763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.4e-17  Score=166.56  Aligned_cols=206  Identities=17%  Similarity=0.128  Sum_probs=123.9

Q ss_pred             cCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCC-cccCCCCCCCEEEcCC-CCCCCCCCccc
Q 002896           98 IIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIP-PQIGHLSYIEALHLFK-NQLSGPIPHEV  175 (869)
Q Consensus        98 ~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p-~~l~~l~~L~~L~L~~-n~l~~~~p~~~  175 (869)
                      .+|+.+.  +++++|||++|.++...+.+|.++++|++|++++|.+.+.+| ..|.+++.++++++.. |.+....+..|
T Consensus        22 ~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~   99 (242)
T d1xwdc1          22 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF   99 (242)
T ss_dssp             SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE
T ss_pred             CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccc
Confidence            4555443  578999999999885555678889999999999988776554 4678888888888764 56666666777


Q ss_pred             cCCCcCceeeccCcccCCCCCC-ccccccccceeeccccCCCCCCCccccCCC-CCCEEEccCCcCCCCcccccCCCCCC
Q 002896          176 GGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEIGNLK-SLSSLALGNNKLCGSIPLFLGNLTNL  253 (869)
Q Consensus       176 ~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L  253 (869)
                      .++++|+++++++|.+....+. .+..+..+..+...++.+....+..+..++ .++.|++++|+++...+. .....++
T Consensus       100 ~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~-~~~~~~l  178 (242)
T d1xwdc1         100 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNC-AFNGTQL  178 (242)
T ss_dssp             ECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT-TTTTCCE
T ss_pred             cccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccc-cccchhh
Confidence            8888888888888877643332 233445555555555555544444444443 566666666666533222 2233333


Q ss_pred             CEE-EccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeec
Q 002896          254 DTL-YLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYL  306 (869)
Q Consensus       254 ~~L-~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L  306 (869)
                      +++ ++.+|+++...+..|.++++|++|++++|+++...+..|.++++|+.+++
T Consensus       179 ~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             EEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             hccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            333 34444555333334555555555555555555333333444444444433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.8e-17  Score=166.03  Aligned_cols=200  Identities=13%  Similarity=0.087  Sum_probs=124.4

Q ss_pred             CCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCC-cCcCCCCCCCEEEccC-CcccccCCcccccCcccceee
Q 002896          515 KLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLP-PEIGDSSQLHVIDLSA-NHIIGKIPSEIGKLSSLIKLI  592 (869)
Q Consensus       515 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~  592 (869)
                      ++++|++++|+++...+..|.++++|++|++++|.+...++ ..+..++.++++++.. |++....+..+.++++|+.++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            45555555555554444455555566666666555554332 3455566666665543 455555555566666666666


Q ss_pred             ccCccccccCcc-cccCCccccccccccccccccccccccCCC-CCCeeeCcCCcCCcccchhhhcccccc-cccccccc
Q 002896          593 LRRNQLFGQLPS-ELGSLIQLEYLDLSSNRLSNSIPRSLGNLV-KLHYLNLSTNQFIQEIPIKLEKLIHLS-ELDLSHNF  669 (869)
Q Consensus       593 L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~  669 (869)
                      +++|.+....+. .+..+..+..+..+++.+....+..|..++ .++.|++++|+++...+..+. ..+++ .+++++|+
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNN  188 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTT
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc-chhhhccccccccc
Confidence            666666543222 233445555556666666665556666654 677888888888754444443 44444 44677888


Q ss_pred             cCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccC
Q 002896          670 LGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISY  715 (869)
Q Consensus       670 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  715 (869)
                      ++...+..|.++++|++|+|++|+++...+..|.+++.|+++++.+
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            8766667788889999999999999887777787777777766644

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=6.9e-18  Score=163.50  Aligned_cols=108  Identities=29%  Similarity=0.363  Sum_probs=44.5

Q ss_pred             CCCEEEccCCcccccC-CcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeC
Q 002896          563 QLHVIDLSANHIIGKI-PSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNL  641 (869)
Q Consensus       563 ~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  641 (869)
                      ++++|+|++|++++.+ +..|.++++|+.|++++|.+.+..+..|..+++|++|+|++|++.+..|.+|.++++|++|+|
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence            3444444444443322 222333444444444444444444444444444444444444444333334444444444444


Q ss_pred             cCCcCCcccchhhhccccccccccccccc
Q 002896          642 STNQFIQEIPIKLEKLIHLSELDLSHNFL  670 (869)
Q Consensus       642 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  670 (869)
                      ++|++++..+..|..+++|++|+|++|.+
T Consensus       110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_         110 YDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CCccccccCHHHhcCCccccccccccccc
Confidence            44444443333344444444444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=1.9e-17  Score=160.25  Aligned_cols=154  Identities=22%  Similarity=0.254  Sum_probs=93.3

Q ss_pred             CEEEccCCcccccCCcccccCcccceeeccCcccccc-CcccccCCccccccccccccccccccccccCCCCCCeeeCcC
Q 002896          565 HVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQ-LPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLST  643 (869)
Q Consensus       565 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  643 (869)
                      ++++.++++++ .+|..+.  +++++|+|++|++++. .+..|..+++|+.|+|++|.+.+..+..|..+++|++|+|++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            46677777776 4565543  5666777777777653 344556666666666666666666666666666666666666


Q ss_pred             CcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcch-hhhcCCCCcEEEccCCcccccC
Q 002896          644 NQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPR-CFEEMNGLLYIDISYNELHGPI  722 (869)
Q Consensus       644 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~g~~  722 (869)
                      |++.+..|..|.++++|++|+|++|+|++..|+.|..+++|++|+|++|++....+. .+.  ..++...+..|.++|..
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCS
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCC
Confidence            666666666666666666666666666666666666666666666666666543221 111  12344445555555555


Q ss_pred             C
Q 002896          723 P  723 (869)
Q Consensus       723 p  723 (869)
                      |
T Consensus       166 p  166 (192)
T d1w8aa_         166 P  166 (192)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.5e-16  Score=156.20  Aligned_cols=165  Identities=22%  Similarity=0.297  Sum_probs=118.4

Q ss_pred             CCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccc
Q 002896          537 CPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLD  616 (869)
Q Consensus       537 ~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  616 (869)
                      +.+|++|++++|.++...  .+..+++|++|++++|++++..  .++.+++|+.|++++|++++. | .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc-c-cccccccccccc
Confidence            445666666666665432  3556667777777777766532  356677777777777776643 2 366777888888


Q ss_pred             cccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCC
Q 002896          617 LSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD  696 (869)
Q Consensus       617 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  696 (869)
                      +++|.+...  ..+..++.++.+++++|.+++.  ..+..+++|+++++++|++++..+  +.++++|+.|++++|++++
T Consensus       119 l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             ccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccccc--ccCCCCCCEEECCCCCCCC
Confidence            888877632  3577888888888888888653  356778889999999998876543  7889999999999999887


Q ss_pred             CcchhhhcCCCCcEEEccC
Q 002896          697 FIPRCFEEMNGLLYIDISY  715 (869)
Q Consensus       697 ~~p~~l~~l~~L~~L~ls~  715 (869)
                      . | .+..+++|++|++++
T Consensus       193 l-~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 L-R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             C-G-GGTTCTTCSEEEEEE
T ss_pred             C-h-hhcCCCCCCEEEccC
Confidence            4 3 588889999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=2.3e-16  Score=153.51  Aligned_cols=161  Identities=24%  Similarity=0.345  Sum_probs=108.4

Q ss_pred             CCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccc
Q 002896          537 CPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLD  616 (869)
Q Consensus       537 ~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  616 (869)
                      ++++++|++++|.++..  +.+..+++|++|++++|++++..  .++++++|++|++++|.+....  .+.+++.|+.|+
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCccccccccccccccccc--cccccccccccc
Confidence            45556666666655532  23556667777777777666432  2666777777777777665433  256777777777


Q ss_pred             cccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCC
Q 002896          617 LSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD  696 (869)
Q Consensus       617 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  696 (869)
                      +++|.+...  ..+..+++|+.|++++|++...  ..+..+++|++|++++|++++..  .++++++|++|++++|++++
T Consensus       113 l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         113 LFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccc--cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC
Confidence            777777643  2466778888888888877542  34777788888888888886653  37788888888888888877


Q ss_pred             CcchhhhcCCCCcEE
Q 002896          697 FIPRCFEEMNGLLYI  711 (869)
Q Consensus       697 ~~p~~l~~l~~L~~L  711 (869)
                      .  +.++.+++|+.|
T Consensus       187 i--~~l~~L~~L~~L  199 (199)
T d2omxa2         187 I--SVLAKLTNLESL  199 (199)
T ss_dssp             C--GGGGGCTTCSEE
T ss_pred             C--ccccCCCCCCcC
Confidence            4  246777777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=7.6e-16  Score=151.10  Aligned_cols=144  Identities=35%  Similarity=0.435  Sum_probs=67.7

Q ss_pred             CCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCE
Q 002896          152 GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSS  231 (869)
Q Consensus       152 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  231 (869)
                      .++++|++|++++|.+++. + .++++++|++|++++|++++. + .+.++++|+.|++++|.+..  ...+..++.++.
T Consensus        65 ~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~  138 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLES  138 (210)
T ss_dssp             GGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCE
T ss_pred             hhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccccc-c-cccccccccccccccccccc--cccccccccccc
Confidence            3344444444444444321 1 133444444444444444321 1 24444444444444444432  123444555555


Q ss_pred             EEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecc
Q 002896          232 LALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLY  307 (869)
Q Consensus       232 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~  307 (869)
                      +++++|.+++.  ..+..+++|+++++++|++++. + .+.++++|++|++++|+++. ++ .+.++++|++|+|+
T Consensus       139 l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         139 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             ccccccccccc--cccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            55555555432  2234455566666666655532 2 25556666666666666553 33 35666666666664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=1.5e-15  Score=147.65  Aligned_cols=161  Identities=27%  Similarity=0.314  Sum_probs=104.5

Q ss_pred             CCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceee
Q 002896          513 HPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLI  592 (869)
Q Consensus       513 ~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  592 (869)
                      ++++++|++++|.++..  ..+..+++|++|++++|++++..|  ++.+++|++|++++|.+... + .+.+++.|+.|+
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-cccccccccccc
Confidence            34555555555555432  234556666666666666654322  66666777777777666532 2 366677777777


Q ss_pred             ccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCC
Q 002896          593 LRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGK  672 (869)
Q Consensus       593 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  672 (869)
                      +++|......  .+..+++|+.|++++|++...  +.+..+++|+.|++++|++++..  .++++++|++|++++|++++
T Consensus       113 l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         113 LFNNQITDID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccc--ccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC
Confidence            7777665432  355677788888888877642  25777788888888888876643  37788888888888888865


Q ss_pred             chhhhhcCCCCCcEE
Q 002896          673 EIPSQICNMRSLEML  687 (869)
Q Consensus       673 ~~p~~l~~l~~L~~L  687 (869)
                      . + .++.+++|++|
T Consensus       187 i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         187 I-S-VLAKLTNLESL  199 (199)
T ss_dssp             C-G-GGGGCTTCSEE
T ss_pred             C-c-cccCCCCCCcC
Confidence            3 3 46778888765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.6e-15  Score=153.59  Aligned_cols=184  Identities=17%  Similarity=0.154  Sum_probs=102.8

Q ss_pred             CCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCC-ccccc-CCcccccCcccceeeccCcc-cccc-Ccccc-cCC
Q 002896          535 GKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSAN-HIIGK-IPSEIGKLSSLIKLILRRNQ-LFGQ-LPSEL-GSL  609 (869)
Q Consensus       535 ~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~~L~~L~L~~n~-l~~~-~~~~~-~~l  609 (869)
                      ..|++|++|++++|.+++..+..+..+++|++|++++| .++.. +..-..++++|++|++++|. ++.. ....+ ...
T Consensus        68 ~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~  147 (284)
T d2astb2          68 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS  147 (284)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred             HhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccc
Confidence            34444444444444444333344444455555555553 23211 11112345556666665542 2111 11111 123


Q ss_pred             ccccccccccc--ccccc-ccccccCCCCCCeeeCcCCc-CCcccchhhhccccccccccccc-ccCCchhhhhcCCCCC
Q 002896          610 IQLEYLDLSSN--RLSNS-IPRSLGNLVKLHYLNLSTNQ-FIQEIPIKLEKLIHLSELDLSHN-FLGKEIPSQICNMRSL  684 (869)
Q Consensus       610 ~~L~~L~Ls~n--~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L  684 (869)
                      ++|+.|+++++  .++.. +.....++++|++|++++|. +++.....+.++++|++|+|++| .+++.....++++++|
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence            56677777654  23321 22334567888888888764 66667777888888888888885 5777777778888999


Q ss_pred             cEEeCCCCCCCC-CcchhhhcCCCCcEEEccCCcccccC
Q 002896          685 EMLNLSHNNLSD-FIPRCFEEMNGLLYIDISYNELHGPI  722 (869)
Q Consensus       685 ~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~ls~N~l~g~~  722 (869)
                      +.|+++++ ++. ..+.....+++|+   +..++++...
T Consensus       228 ~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~  262 (284)
T d2astb2         228 KTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIA  262 (284)
T ss_dssp             CEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTT
T ss_pred             CEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCC
Confidence            99999887 333 2333334566654   5667776543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.8e-15  Score=154.45  Aligned_cols=179  Identities=21%  Similarity=0.202  Sum_probs=93.2

Q ss_pred             CCCcEEEccCCCCCCC-CCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCcc-cccc-CcccccCCccccc
Q 002896          538 PNLGTFDVSVNNIIGS-LPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQ-LFGQ-LPSELGSLIQLEY  614 (869)
Q Consensus       538 ~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~  614 (869)
                      .+|++|+++++.+++. ++..+..+++|++|++++|.+++..+..++.+++|++|++++|. ++.. +......+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            3455555555544322 22334556666666666666655555556666666666666643 3211 1122334566666


Q ss_pred             ccccccc-cccc-cccccc-CCCCCCeeeCcCCc--CCcc-cchhhhccccccccccccc-ccCCchhhhhcCCCCCcEE
Q 002896          615 LDLSSNR-LSNS-IPRSLG-NLVKLHYLNLSTNQ--FIQE-IPIKLEKLIHLSELDLSHN-FLGKEIPSQICNMRSLEML  687 (869)
Q Consensus       615 L~Ls~n~-l~~~-~~~~~~-~l~~L~~L~Ls~N~--l~~~-~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L  687 (869)
                      |++++|. ++.. ++..+. ..+.|+.|+++++.  ++.. +......+++|++|++++| .+++.....+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            6666643 2211 111122 23556666666542  2221 2222345566666666664 3555555566666666666


Q ss_pred             eCCCC-CCCCCcchhhhcCCCCcEEEccCC
Q 002896          688 NLSHN-NLSDFIPRCFEEMNGLLYIDISYN  716 (869)
Q Consensus       688 ~Ls~N-~l~~~~p~~l~~l~~L~~L~ls~N  716 (869)
                      ++++| .+++.....++++++|+.|+++++
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            66663 455555555566666666666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.7e-14  Score=132.85  Aligned_cols=129  Identities=19%  Similarity=0.125  Sum_probs=89.7

Q ss_pred             cccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccc
Q 002896          582 IGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLS  661 (869)
Q Consensus       582 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  661 (869)
                      +.++.++++|+|++|+++.. +..+..+++|+.||+++|+++..  +.|..+++|++|++++|++++..+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            44555666666666666544 34445667777777777777643  3577778888888888887766666667788888


Q ss_pred             cccccccccCCchh-hhhcCCCCCcEEeCCCCCCCCCc---chhhhcCCCCcEEEc
Q 002896          662 ELDLSHNFLGKEIP-SQICNMRSLEMLNLSHNNLSDFI---PRCFEEMNGLLYIDI  713 (869)
Q Consensus       662 ~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~l  713 (869)
                      +|++++|+++.... ..+..+++|++|++++|+++...   +..+..+++|++||-
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            88888888855422 46778888888888888886643   235677888888873

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=9.6e-15  Score=155.46  Aligned_cols=247  Identities=19%  Similarity=0.190  Sum_probs=149.3

Q ss_pred             ccccCCCCCcEEecCCCcCcCCC-----CCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcC
Q 002896          461 EELGNLVKLTMLTLSDNQLQGSI-----PNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWG  535 (869)
Q Consensus       461 ~~~~~l~~L~~L~Ls~n~l~~~~-----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~  535 (869)
                      ..+.....|++|+|++|.+....     ..+...++|+.++++++...........              ....+...+.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~--------------~~~~l~~~l~   90 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPE--------------ALRLLLQALL   90 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHH--------------HHHHHHHHHT
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccch--------------HHHHHHHHHh
Confidence            44555667777777777664311     1344556666666655533211100000              0000111234


Q ss_pred             CCCCCcEEEccCCCCCCC----CCcCcCCCCCCCEEEccCCcccccCCc-------------ccccCcccceeeccCccc
Q 002896          536 KCPNLGTFDVSVNNIIGS----LPPEIGDSSQLHVIDLSANHIIGKIPS-------------EIGKLSSLIKLILRRNQL  598 (869)
Q Consensus       536 ~~~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~-------------~l~~l~~L~~L~L~~n~l  598 (869)
                      .+++|+.|++++|.+...    +...+..+++|+.|++++|.+...-..             .....+.|+.+++++|.+
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i  170 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  170 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             hCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccc
Confidence            455666666666665543    122334556777777777765421100             012356777777777776


Q ss_pred             ccc----CcccccCCcccccccccccccccc-----ccccccCCCCCCeeeCcCCcCCcc----cchhhhcccccccccc
Q 002896          599 FGQ----LPSELGSLIQLEYLDLSSNRLSNS-----IPRSLGNLVKLHYLNLSTNQFIQE----IPIKLEKLIHLSELDL  665 (869)
Q Consensus       599 ~~~----~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L  665 (869)
                      ...    +...+...+.|++|++++|.+...     +...+..+++|+.|+|++|.++..    +...+..+++|++|+|
T Consensus       171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~L  250 (344)
T d2ca6a1         171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  250 (344)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             cccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhh
Confidence            432    233345667888888888887642     344577788999999999987543    3455678889999999


Q ss_pred             cccccCCchhhh----hcC--CCCCcEEeCCCCCCCCCc----chhhh-cCCCCcEEEccCCccccc
Q 002896          666 SHNFLGKEIPSQ----ICN--MRSLEMLNLSHNNLSDFI----PRCFE-EMNGLLYIDISYNELHGP  721 (869)
Q Consensus       666 s~N~l~~~~p~~----l~~--l~~L~~L~Ls~N~l~~~~----p~~l~-~l~~L~~L~ls~N~l~g~  721 (869)
                      ++|.|++.....    +..  .+.|++||+++|+++...    ...+. +.+.|++|++++|++...
T Consensus       251 s~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         251 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             hcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            999987664333    333  467999999999987642    33342 578899999999998653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.3e-14  Score=130.30  Aligned_cols=127  Identities=20%  Similarity=0.103  Sum_probs=67.1

Q ss_pred             CCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccc
Q 002896          535 GKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEY  614 (869)
Q Consensus       535 ~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  614 (869)
                      .++.++++|++++|+++.. +..+..+++|+.|++++|+++..  +.+.                        .+++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~------------------------~l~~L~~   67 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFP------------------------LLRRLKT   67 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCC------------------------CCSSCCE
T ss_pred             cCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcc------------------------cCcchhh
Confidence            3445556666666655532 33334455555555555555422  1234                        4555555


Q ss_pred             cccccccccccccccccCCCCCCeeeCcCCcCCcccc-hhhhcccccccccccccccCCch---hhhhcCCCCCcEEe
Q 002896          615 LDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIP-IKLEKLIHLSELDLSHNFLGKEI---PSQICNMRSLEMLN  688 (869)
Q Consensus       615 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~  688 (869)
                      |++++|+++...+..+..+++|+.|++++|++..... ..+..+++|++|++++|.++...   +..+..+|+|++||
T Consensus        68 L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          68 LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             hhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            5555555554444444555666666666666543221 34555666666666666654332   23456667777766

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=2e-13  Score=120.46  Aligned_cols=102  Identities=29%  Similarity=0.440  Sum_probs=68.4

Q ss_pred             cEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCc
Q 002896          110 KYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSN  189 (869)
Q Consensus       110 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  189 (869)
                      |+|||++|+++ .++ .++.+++|++|++++|.++ .+|..++.+++|++|++++|.+++ +| .++++++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            57788888876 344 4777777888888888776 566677777777777777777764 33 4667777777777777


Q ss_pred             ccCCCC-CCccccccccceeeccccCCC
Q 002896          190 FLKGSI-PPSLGNLTNLAILYLHNNSLS  216 (869)
Q Consensus       190 ~l~~~~-~~~l~~l~~L~~L~L~~n~l~  216 (869)
                      +++... ...+..+++|++|++++|.+.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            766432 234555566666666665554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=3.1e-13  Score=119.21  Aligned_cols=104  Identities=25%  Similarity=0.285  Sum_probs=77.7

Q ss_pred             cccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCC
Q 002896          613 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHN  692 (869)
Q Consensus       613 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  692 (869)
                      ++|+|++|+++.. + .++.+++|++||+++|++++ +|..++.+++|++|++++|+|+.. | .++.+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            4577777777633 3 47777888888888888754 566778888888888888888654 3 4778888888888888


Q ss_pred             CCCCCcc-hhhhcCCCCcEEEccCCccccc
Q 002896          693 NLSDFIP-RCFEEMNGLLYIDISYNELHGP  721 (869)
Q Consensus       693 ~l~~~~p-~~l~~l~~L~~L~ls~N~l~g~  721 (869)
                      +++...+ ..+..+++|+++++++|++++.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            8887643 5677888888888888888653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.41  E-value=1.1e-14  Score=154.87  Aligned_cols=251  Identities=19%  Similarity=0.175  Sum_probs=149.8

Q ss_pred             cccccCCCCCCeEEccCCCCccc----CCccccCCCCCcEEecCCCcCcCCC-----------CCcCCCCCCCEEECcCC
Q 002896          436 SHSLGNLTHMTLLALYDNALSGV----IPEELGNLVKLTMLTLSDNQLQGSI-----------PNLRNLTNLIRLRLNRN  500 (869)
Q Consensus       436 ~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~-----------~~l~~l~~L~~L~l~~n  500 (869)
                      ...+.....++.|++++|.+...    +...+...++|+.++++++......           ..+..+++|+.|++++|
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            44566788999999999988653    3345677899999999988654221           12445667777777777


Q ss_pred             cCcccc----CccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccc
Q 002896          501 HLTCNI----SESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIG  576 (869)
Q Consensus       501 ~l~~~~----~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  576 (869)
                      .++...    ...+...++|++|++++|.+.......+..  .+..+.         ........+.|+.+++++|++..
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~~---------~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQELA---------VNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHHH---------HHHHHHTCCCCCEEECCSSCCTG
T ss_pred             ccccccccchhhhhcccccchheecccccccccccccccc--cccccc---------cccccccCcccceeecccccccc
Confidence            665432    222334556666666666553211000000  000000         00001223455566666655542


Q ss_pred             c----CCcccccCcccceeeccCcccccc-----CcccccCCcccccccccccccccc----ccccccCCCCCCeeeCcC
Q 002896          577 K----IPSEIGKLSSLIKLILRRNQLFGQ-----LPSELGSLIQLEYLDLSSNRLSNS----IPRSLGNLVKLHYLNLST  643 (869)
Q Consensus       577 ~----~p~~l~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~  643 (869)
                      .    +...+..++.|+.|++++|.+...     +...+...++|+.|++++|.++..    +...+..+++|++|+|++
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~  252 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  252 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             cccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhc
Confidence            1    222334456666777766665431     233455677788888888877542    344567788888899998


Q ss_pred             CcCCcccchh----hhc--ccccccccccccccCCch----hhhhc-CCCCCcEEeCCCCCCCCC
Q 002896          644 NQFIQEIPIK----LEK--LIHLSELDLSHNFLGKEI----PSQIC-NMRSLEMLNLSHNNLSDF  697 (869)
Q Consensus       644 N~l~~~~p~~----l~~--l~~L~~L~Ls~N~l~~~~----p~~l~-~l~~L~~L~Ls~N~l~~~  697 (869)
                      |.+.+.-...    +..  .+.|++|++++|.|+...    ...+. +++.|+.|+|++|++...
T Consensus       253 n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             CccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            8887543333    332  356888999999886543    34443 578899999999999764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.2e-12  Score=118.84  Aligned_cols=112  Identities=21%  Similarity=0.119  Sum_probs=94.5

Q ss_pred             ccccccccccccccccccccccCCCCCCeeeCcCCc-CCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEe
Q 002896          610 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQ-FIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLN  688 (869)
Q Consensus       610 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  688 (869)
                      ...+.++.+++.+. ..|..+..+++|+.|++++|+ ++...+..|.++++|+.|+|++|+|+...|.+|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34456777777776 456778888999999998765 7776677899999999999999999888899999999999999


Q ss_pred             CCCCCCCCCcchhhhcCCCCcEEEccCCcccccCC
Q 002896          689 LSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIP  723 (869)
Q Consensus       689 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p  723 (869)
                      |++|+|+...+..|..+ .|+.|++++|++.|.|.
T Consensus        87 Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3          87 LSFNALESLSWKTVQGL-SLQELVLSGNPLHCSCA  120 (156)
T ss_dssp             CCSSCCSCCCSTTTCSC-CCCEEECCSSCCCCCGG
T ss_pred             ccCCCCcccChhhhccc-cccccccCCCcccCCch
Confidence            99999998777777665 69999999999998774

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=1.1e-13  Score=133.48  Aligned_cols=129  Identities=23%  Similarity=0.220  Sum_probs=85.6

Q ss_pred             CcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhccc
Q 002896          579 PSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLI  658 (869)
Q Consensus       579 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  658 (869)
                      +..+..+++|++|++++|++... + .+..+++|++|++++|.++. +|..+..+++|+.|++++|+++..  ..+..++
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~  115 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKLV  115 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHHHH
T ss_pred             hhHHhcccccceeECcccCCCCc-c-cccCCccccChhhccccccc-cccccccccccccccccccccccc--ccccccc
Confidence            34556666666666666666543 2 35567777777777777763 344445556778888888877653  3477777


Q ss_pred             ccccccccccccCCchh-hhhcCCCCCcEEeCCCCCCCCCcchh----------hhcCCCCcEEE
Q 002896          659 HLSELDLSHNFLGKEIP-SQICNMRSLEMLNLSHNNLSDFIPRC----------FEEMNGLLYID  712 (869)
Q Consensus       659 ~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~  712 (869)
                      +|+.|++++|+++.... ..+..+++|+.|++++|++....+..          +..+++|++||
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            88888888888865432 56777888888888888776543322          56677788776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.16  E-value=6e-13  Score=128.17  Aligned_cols=129  Identities=24%  Similarity=0.227  Sum_probs=86.0

Q ss_pred             CcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCC
Q 002896          555 PPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLV  634 (869)
Q Consensus       555 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  634 (869)
                      |..+..+++|++|++++|+++. ++ .+.++++|+.|++++|.+.. +|..+..+++|+.|++++|+++..  ..+..++
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~  115 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKLV  115 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHHHH
T ss_pred             hhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-cccccccccccccccccccccccc--ccccccc
Confidence            3455666677777777777663 33 46677777777777777653 343444456777777777777743  2466777


Q ss_pred             CCCeeeCcCCcCCcccc-hhhhcccccccccccccccCCchhh----------hhcCCCCCcEEe
Q 002896          635 KLHYLNLSTNQFIQEIP-IKLEKLIHLSELDLSHNFLGKEIPS----------QICNMRSLEMLN  688 (869)
Q Consensus       635 ~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~----------~l~~l~~L~~L~  688 (869)
                      +|+.|++++|+++.... ..+..+++|+.|+|++|++....+.          .+..+|+|+.||
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            78888888887765432 4577778888888888877544332          256788999887

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.2e-10  Score=106.99  Aligned_cols=108  Identities=17%  Similarity=0.147  Sum_probs=66.7

Q ss_pred             CCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCc-ccccCCcccccCcccceeeccCccccccCcccccCCccccccc
Q 002896          538 PNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANH-IIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLD  616 (869)
Q Consensus       538 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  616 (869)
                      ...+.++.+++.+. ..|..+..+++|++|++++|+ ++...+..|.++++|+.|++++|++....+..|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            33445566655554 345556666677777776553 5544445566667777777777776666666666777777777


Q ss_pred             cccccccccccccccCCCCCCeeeCcCCcCC
Q 002896          617 LSSNRLSNSIPRSLGNLVKLHYLNLSTNQFI  647 (869)
Q Consensus       617 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  647 (869)
                      |++|+++...+..|..+ +|+.|+|++|++.
T Consensus        87 Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhccc-cccccccCCCccc
Confidence            77777764444444433 5777777777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.8e-08  Score=92.73  Aligned_cols=103  Identities=28%  Similarity=0.171  Sum_probs=65.9

Q ss_pred             CccccccccccccccccccccccCCCCCCeeeCcCCcCCccc--chhhhcccccccccccccccCCchhhhhcCCCCCcE
Q 002896          609 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEI--PIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEM  686 (869)
Q Consensus       609 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  686 (869)
                      +..+..++..++... .++..+..++.|++|+|++|+++...  +..+..+++|+.|+|++|.|+...+-.+.....|+.
T Consensus        41 ~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~  119 (162)
T d1koha1          41 QNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE  119 (162)
T ss_dssp             TTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSS
T ss_pred             ccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccce
Confidence            334444555444433 33444556777888888888876543  455677788888888888886655434445556788


Q ss_pred             EeCCCCCCCCCcch-------hhhcCCCCcEEE
Q 002896          687 LNLSHNNLSDFIPR-------CFEEMNGLLYID  712 (869)
Q Consensus       687 L~Ls~N~l~~~~p~-------~l~~l~~L~~L~  712 (869)
                      |++++|+++.....       .+..+++|+.||
T Consensus       120 L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         120 LWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             eecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            88888888765432       245677777775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.5e-08  Score=91.75  Aligned_cols=86  Identities=27%  Similarity=0.193  Sum_probs=64.2

Q ss_pred             cccccCCccccccccccccccccc--cccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchh-----
Q 002896          603 PSELGSLIQLEYLDLSSNRLSNSI--PRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIP-----  675 (869)
Q Consensus       603 ~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-----  675 (869)
                      +..+..+++|++|+|++|+++...  +..+..+++|+.|||++|++....+........|+.|++++|.+.....     
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            334456788888888888887642  4557778899999999999877655455555678999999999876543     


Q ss_pred             --hhhcCCCCCcEEe
Q 002896          676 --SQICNMRSLEMLN  688 (869)
Q Consensus       676 --~~l~~l~~L~~L~  688 (869)
                        ..+..+|+|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence              3467789999986

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.95  E-value=5e-06  Score=76.28  Aligned_cols=110  Identities=18%  Similarity=0.240  Sum_probs=67.5

Q ss_pred             Cccccccccccc-ccccc----ccccccCCCCCCeeeCcCCcCCc----ccchhhhcccccccccccccccCCc----hh
Q 002896          609 LIQLEYLDLSSN-RLSNS----IPRSLGNLVKLHYLNLSTNQFIQ----EIPIKLEKLIHLSELDLSHNFLGKE----IP  675 (869)
Q Consensus       609 l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p  675 (869)
                      .++|++|+|+++ .++..    +...+...+.|+.|+|++|.+..    .+...+...+.|++|+|++|.++..    +-
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            355666666543 23321    22345566777777777777753    2233455567778888888877654    23


Q ss_pred             hhhcCCCCCcEEeCCCCCCCCC-------cchhhhcCCCCcEEEccCCcc
Q 002896          676 SQICNMRSLEMLNLSHNNLSDF-------IPRCFEEMNGLLYIDISYNEL  718 (869)
Q Consensus       676 ~~l~~l~~L~~L~Ls~N~l~~~-------~p~~l~~l~~L~~L~ls~N~l  718 (869)
                      +.+...++|++|++++|.+...       +...+...++|+.|+++++..
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            4566677888888888766543       334455567788888876643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.71  E-value=9.4e-06  Score=74.37  Aligned_cols=86  Identities=15%  Similarity=0.132  Sum_probs=48.3

Q ss_pred             CCccccccccccccccc----cccccccCCCCCCeeeCcCCcCCccc----chhhhcccccccccccccccCCc------
Q 002896          608 SLIQLEYLDLSSNRLSN----SIPRSLGNLVKLHYLNLSTNQFIQEI----PIKLEKLIHLSELDLSHNFLGKE------  673 (869)
Q Consensus       608 ~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~------  673 (869)
                      ..+.|++|+|++|.+..    .+.+.+...+.|+.|+|++|.+...-    ...+...++|++|++++|.+...      
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~  121 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM  121 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHH
Confidence            33445555555554432    12223444566777777777665332    22345556677777777654322      


Q ss_pred             -hhhhhcCCCCCcEEeCCCCC
Q 002896          674 -IPSQICNMRSLEMLNLSHNN  693 (869)
Q Consensus       674 -~p~~l~~l~~L~~L~Ls~N~  693 (869)
                       +.+.+...++|+.|+++.+.
T Consensus       122 ~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         122 DMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhCCCccEeeCcCCC
Confidence             44556667888888887664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.35  E-value=6.2e-05  Score=68.67  Aligned_cols=111  Identities=15%  Similarity=0.192  Sum_probs=64.7

Q ss_pred             CCcccccccccc-ccccc----cccccccCCCCCCeeeCcCCcCCccc----chhhhcccccccccccccccCCc----h
Q 002896          608 SLIQLEYLDLSS-NRLSN----SIPRSLGNLVKLHYLNLSTNQFIQEI----PIKLEKLIHLSELDLSHNFLGKE----I  674 (869)
Q Consensus       608 ~l~~L~~L~Ls~-n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~----~  674 (869)
                      +.++|++|++++ +.++.    .+-.++...+.|++|+|++|.+....    ...+...++++.+++++|.++..    +
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            334555555554 23322    12234455667777777777665432    23345556777777777776543    2


Q ss_pred             hhhhcCCCCCcEEeC--CCCCCCCC----cchhhhcCCCCcEEEccCCcc
Q 002896          675 PSQICNMRSLEMLNL--SHNNLSDF----IPRCFEEMNGLLYIDISYNEL  718 (869)
Q Consensus       675 p~~l~~l~~L~~L~L--s~N~l~~~----~p~~l~~l~~L~~L~ls~N~l  718 (869)
                      .+.+...++|+.++|  ++|.+...    +...+...+.|+.|++++++.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            355666777776444  45666542    345556677888888877654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.14  E-value=0.0001  Score=67.11  Aligned_cols=88  Identities=17%  Similarity=0.149  Sum_probs=52.4

Q ss_pred             cCCcccccccccccccccc----ccccccCCCCCCeeeCcCCcCCccc----chhhhccccccc--ccccccccCC----
Q 002896          607 GSLIQLEYLDLSSNRLSNS----IPRSLGNLVKLHYLNLSTNQFIQEI----PIKLEKLIHLSE--LDLSHNFLGK----  672 (869)
Q Consensus       607 ~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~--L~Ls~N~l~~----  672 (869)
                      ...+.|++|++++|.++..    +...+...++++.+++++|.+....    ...+...++|+.  |++++|.+..    
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~  122 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  122 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHH
Confidence            3445555666666655432    2234455667777777777765332    244556667765  4445666644    


Q ss_pred             chhhhhcCCCCCcEEeCCCCCC
Q 002896          673 EIPSQICNMRSLEMLNLSHNNL  694 (869)
Q Consensus       673 ~~p~~l~~l~~L~~L~Ls~N~l  694 (869)
                      .+.+.+...+.|+.|+++.+..
T Consensus       123 ~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         123 EIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCCCcCEEeCcCCCC
Confidence            2455566788888888876643

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0002  Score=63.53  Aligned_cols=53  Identities=25%  Similarity=0.357  Sum_probs=45.6

Q ss_pred             ccccccCcCHHHHHHHhcCCCcccccchhh---------------hhhhhhhhhHHHHhcc-----ccccccc
Q 002896          813 VLTFEGKIVYEEIIRQRMVLMMSTALEKVD---------------KEVYTKLIYLLEKSLQ-----SRNFIRH  865 (869)
Q Consensus       813 ~~~~~~~isy~~~~~a~~~~~~~~~Le~~~---------------~~i~~~i~~~~~~s~~-----s~~fl~~  865 (869)
                      .+.||+||||++.|++|+...+.+.||+..               ..+.++|.++|++|++     |++|++.
T Consensus         3 ~~~YDvFiSys~~D~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s   75 (149)
T d1fyxa_           3 NICYDAFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKS   75 (149)
T ss_dssp             SCCEEEEEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHH
T ss_pred             CCEEEEEEECchhhHHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccc
Confidence            478999999999999999877899998742               6689999999999998     8888764

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0003  Score=63.28  Aligned_cols=53  Identities=28%  Similarity=0.315  Sum_probs=47.3

Q ss_pred             ccccccCcCHHHHHHHhcCCCcccccchhh-------------hhhhhhhhhHHHHhcc-----ccccccc
Q 002896          813 VLTFEGKIVYEEIIRQRMVLMMSTALEKVD-------------KEVYTKLIYLLEKSLQ-----SRNFIRH  865 (869)
Q Consensus       813 ~~~~~~~isy~~~~~a~~~~~~~~~Le~~~-------------~~i~~~i~~~~~~s~~-----s~~fl~~  865 (869)
                      .++||+||||++.|++|+...+.+.||+.|             +.+.++|.++|++|++     |++|++.
T Consensus        10 ~~~yDvFisys~~D~~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s   80 (161)
T d1fyva_          10 NLQFHAFISYSGHDSFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQS   80 (161)
T ss_dssp             CCCEEEEEECCGGGHHHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHH
T ss_pred             CCeeEEEEecChhHHHHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccC
Confidence            478999999999999999878999999888             6689999999999998     8888764