Citrus Sinensis ID: 002970
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 862 | 2.2.26 [Sep-21-2011] | |||||||
| Q5YDB6 | 967 | RNA polymerase II C-termi | yes | no | 0.980 | 0.873 | 0.658 | 0.0 | |
| Q5YDB5 | 770 | RNA polymerase II C-termi | no | no | 0.723 | 0.810 | 0.479 | 1e-162 | |
| Q9Y5B0 | 961 | RNA polymerase II subunit | no | no | 0.095 | 0.085 | 0.329 | 7e-05 | |
| Q7TSG2 | 960 | RNA polymerase II subunit | yes | no | 0.125 | 0.112 | 0.314 | 9e-05 | |
| Q03254 | 732 | RNA polymerase II subunit | yes | no | 0.127 | 0.150 | 0.314 | 0.0001 |
| >sp|Q5YDB6|CPL1_ARATH RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana GN=CPL1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1126 bits (2912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/866 (65%), Positives = 673/866 (77%), Gaps = 21/866 (2%)
Query: 1 MPLGLTEELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIV 60
M LG EELHLVAMYS N + PCFWAFSV G+Y+SCL MLNLRCLGIVFDLDETL+V
Sbjct: 110 MLLG-GEELHLVAMYSENIKNDRPCFWAFSVAPGIYDSCLVMLNLRCLGIVFDLDETLVV 168
Query: 61 ANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVI 120
ANTMRSFED+I+ R+I+ E+DPQR+A + AE+KRYQDDKN+LKQY E+DQV ENG+VI
Sbjct: 169 ANTMRSFEDKIDGFQRRINNEMDPQRLAVIVAEMKRYQDDKNLLKQYIESDQVVENGEVI 228
Query: 121 KVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTA 180
KVQSE+VPALSD+HQ LVRPLIRLQEKNIILTRINP IRDTSVLVR+RP+WE+LRSYLTA
Sbjct: 229 KVQSEIVPALSDNHQPLVRPLIRLQEKNIILTRINPMIRDTSVLVRMRPSWEELRSYLTA 288
Query: 181 RGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDG 240
+GRKRFEVYVCTMAERDYALEMWRLLDPE NLINT +LL RIVCVKSG +KSLFNVF DG
Sbjct: 289 KGRKRFEVYVCTMAERDYALEMWRLLDPEGNLINTNDLLARIVCVKSGFKKSLFNVFLDG 348
Query: 241 TCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRG 300
TCHPKMALVIDDRLKVWD+KDQPRVHVVPAFAPYY+PQAEA A PVLCVARN+AC VRG
Sbjct: 349 TCHPKMALVIDDRLKVWDEKDQPRVHVVPAFAPYYSPQAEA-AATPVLCVARNVACGVRG 407
Query: 301 GFFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADA 360
GFF++FD+ LL RI EISYE+D +DIPSPPDVS+YLVSEDD + NG KDPLSFDGMAD
Sbjct: 408 GFFRDFDDSLLPRIAEISYENDAEDIPSPPDVSHYLVSEDDTSGLNGNKDPLSFDGMADT 467
Query: 361 EVERRLKEAIAASATISSAVANLDPRL-APFQYTM---------PSSSSTTTLPTSQAAV 410
EVERRLKEAI+AS+ + A AN+DPR+ AP Q+ M A
Sbjct: 468 EVERRLKEAISASSAVLPA-ANIDPRIAAPVQFPMASASSVSVPVPVQVVQQAIQPSAMA 526
Query: 411 MPLANMQFPPA-TSLVKPLGHVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQHGM 469
P Q P TS+ K H+ P E SLQSSPAREEGEVPESELDPDTRRRLLILQHG
Sbjct: 527 FPSIPFQQPQQPTSIAK---HLVPSEPSLQSSPAREEGEVPESELDPDTRRRLLILQHGQ 583
Query: 470 DTRENAPSEAPFPARTQMQVSVPRVPSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQI 529
DTR+ APSE FP R +Q V SR WFPVEEEM P Q+ RAV KE+PL+SE + +
Sbjct: 584 DTRDPAPSEPSFPQRPPVQAPPSHVQSRNGWFPVEEEMDPAQIRRAVSKEYPLDSEMIHM 643
Query: 530 EKHRPPHPSFFPKIENPSTSDRP-HENQRMPKEALRRDDRLRLNHTLSDYQSFSGEEIPL 588
EKHRP HPSFF KI+N + SDR HEN+R PKE+LRRD++LR N+ L D F GE+
Sbjct: 644 EKHRPRHPSFFSKIDNSTQSDRMLHENRRPPKESLRRDEQLRSNNNLPDSHPFYGEDASW 703
Query: 589 SRSSSSSRDVDFESGRDVSSTETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEAWFA 648
++SSS + D+DF R VS+TET + VL IA+KCG KVE++P+LV+ST+L+FS+EAW +
Sbjct: 704 NQSSSRNSDLDFLPERSVSATETSADVLHGIAIKCGAKVEYKPSLVSSTDLRFSVEAWLS 763
Query: 649 GEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRVKSDSGSGHGDGSRFSNANENCFMGE 708
+KIGEGIG++RREA +AAE SI++LA+ YM R D G H D + F+ NEN MG
Sbjct: 764 NQKIGEGIGKSRREALHKAAEASIQNLADGYM-RANGDPGPSHRDATPFT--NENISMGN 820
Query: 709 INSFGGQPLAKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQPPSS 768
N+ QP A+DE+ S+ DPRLEGS + GS++AL+ELC +EGL + FQ Q
Sbjct: 821 ANALNNQPFARDETALPVSSRPTDPRLEGSMRHTGSITALRELCASEGLEMAFQSQRQLP 880
Query: 769 ANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSMFGQFPQKHQGSPRS 828
++ V +DE++AQVEIDG+V+G+G+GSTWDEA+MQAAE+AL S+RSM GQ K QGSPRS
Sbjct: 881 SDMVHRDELHAQVEIDGRVVGEGVGSTWDEARMQAAERALSSVRSMLGQPLHKRQGSPRS 940
Query: 829 LQGMPNKRLKPEFPRVLQRMPPSGRY 854
GM NKRLKP+F R LQRMP SGRY
Sbjct: 941 FGGMSNKRLKPDFQRSLQRMPSSGRY 966
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Processively dephosphorylates 'Ser-5' but not 'Ser-2' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II. Together with CPL2, required for male gametes fertility. Multifunctional regulator that modulates plant growth, stress, and phytohormones responses. Negative regulator of stress gene transcription involved in abscisic acid (ABA) mediated and jasmonic acid (JA) mediated signaling pathways, NaCl, osmotic stress, wounding, and cold resistance. Regulates negatively the expression of jasmonic acid (JA) biosynthetic genes in response to wounding. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6 |
| >sp|Q5YDB5|CPL2_ARATH RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana GN=CPL2 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo sapiens GN=CTDP1 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q7TSG2|CTDP1_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus musculus GN=Ctdp1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q03254|FCP1_YEAST RNA polymerase II subunit A C-terminal domain phosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCP1 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 862 | ||||||
| 255555995 | 978 | double-stranded RNA binding protein, put | 0.991 | 0.874 | 0.777 | 0.0 | |
| 356521333 | 954 | PREDICTED: RNA polymerase II C-terminal | 0.995 | 0.899 | 0.719 | 0.0 | |
| 224076842 | 967 | predicted protein [Populus trichocarpa] | 0.980 | 0.873 | 0.739 | 0.0 | |
| 356548751 | 960 | PREDICTED: RNA polymerase II C-terminal | 0.995 | 0.893 | 0.713 | 0.0 | |
| 356555137 | 958 | PREDICTED: RNA polymerase II C-terminal | 0.996 | 0.896 | 0.704 | 0.0 | |
| 356549363 | 960 | PREDICTED: RNA polymerase II C-terminal | 0.988 | 0.887 | 0.707 | 0.0 | |
| 147832855 | 894 | hypothetical protein VITISV_004100 [Viti | 0.926 | 0.893 | 0.703 | 0.0 | |
| 297803978 | 965 | hypothetical protein ARALYDRAFT_492708 [ | 0.982 | 0.877 | 0.672 | 0.0 | |
| 79481163 | 967 | RNA polymerase II C-terminal domain phos | 0.980 | 0.873 | 0.658 | 0.0 | |
| 110738453 | 967 | hypothetical protein [Arabidopsis thalia | 0.980 | 0.873 | 0.657 | 0.0 |
| >gi|255555995|ref|XP_002519032.1| double-stranded RNA binding protein, putative [Ricinus communis] gi|223541695|gb|EEF43243.1| double-stranded RNA binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1354 bits (3505), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 672/864 (77%), Positives = 748/864 (86%), Gaps = 9/864 (1%)
Query: 7 EELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRS 66
EELHLVAM+SRN+E+QYPCFWAF++ SGLY+SCL MLNLRCLGIVFDLDETLIVANTMRS
Sbjct: 116 EELHLVAMFSRNDERQYPCFWAFNISSGLYDSCLVMLNLRCLGIVFDLDETLIVANTMRS 175
Query: 67 FEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEV 126
FEDRIEAL RKISTE+DPQRI+GM +EVKRYQDDK ILKQY +NDQV ENG+VIK Q EV
Sbjct: 176 FEDRIEALQRKISTELDPQRISGMLSEVKRYQDDKTILKQYVDNDQVVENGRVIKTQFEV 235
Query: 127 VPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRF 186
VPALSD+HQ +VRPLIRLQE+NIILTRINPQIRDTSVLVRLRPAWE+LRSYLTARGRKRF
Sbjct: 236 VPALSDNHQTIVRPLIRLQERNIILTRINPQIRDTSVLVRLRPAWEELRSYLTARGRKRF 295
Query: 187 EVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKM 246
EVYVCTMAERDYALEMWRLLDPESNLIN+KELLDRIVCVKSG RKSLFNVFQDG CHPKM
Sbjct: 296 EVYVCTMAERDYALEMWRLLDPESNLINSKELLDRIVCVKSGLRKSLFNVFQDGICHPKM 355
Query: 247 ALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEF 306
ALVIDDRLKVWD+KDQPRVHVVPAFAPYYAPQAEANNA+PVLCVARN+ACNVRGGFFKEF
Sbjct: 356 ALVIDDRLKVWDEKDQPRVHVVPAFAPYYAPQAEANNAVPVLCVARNVACNVRGGFFKEF 415
Query: 307 DEGLLQRIPEISYEDDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRL 366
DEGLLQRIPEIS+EDD+ DIPSPPDVSNYLV EDDA T+NG +DPLSFDGMADAEVE+RL
Sbjct: 416 DEGLLQRIPEISFEDDMNDIPSPPDVSNYLVPEDDAFTSNGNRDPLSFDGMADAEVEKRL 475
Query: 367 KEAIAASATISSAVANLDPRLA-PFQYTMPSSSSTTTLPTSQAAVMPLANMQFPPATSLV 425
KEAI+ S+ S VANLD RL P QYTM +SSS+ +PTSQ AV+ +MQ P A LV
Sbjct: 476 KEAISISSAFPSTVANLDARLVPPLQYTM-ASSSSIPVPTSQPAVVTFPSMQLPQAAPLV 534
Query: 426 KPLGHVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPAR- 484
KPLG V P E SLQSSPAREEGEVPESELDPDTRRRLLILQHG D R+ APSE+PFP R
Sbjct: 535 KPLGQVVPSEPSLQSSPAREEGEVPESELDPDTRRRLLILQHGQDLRDPAPSESPFPVRP 594
Query: 485 -TQMQVSVPRVPSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQIEKHRPPHPSFFPKI 543
MQVSVPRV SRG+W PVEEEMSPRQLNRAV +EFP+++E M I+KHRP HPSFFPK+
Sbjct: 595 SNSMQVSVPRVQSRGNWVPVEEEMSPRQLNRAVTREFPMDTEPMHIDKHRPHHPSFFPKV 654
Query: 544 ENPSTSDR-PHENQRMPKEALRRDDRLRLNHTLSDYQSFSGEEIPLSRSSSSSRDVDFES 602
E+ S+R PHENQR+PK A +DDRLRLN T+S+YQS SGEE LSRSSSS+RD+D ES
Sbjct: 655 ESSIPSERMPHENQRLPKVAPYKDDRLRLNQTMSNYQSLSGEENSLSRSSSSNRDLDVES 714
Query: 603 GRDVSSTETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEAWFAGEKIGEGIGRTRRE 662
R VSS ETP VL +I+MKCG KVEF+ +LV S +LQFS+EAWFAGE++GEG GRTRRE
Sbjct: 715 DRAVSSAETPVRVLHEISMKCGAKVEFKHSLVNSRDLQFSVEAWFAGERVGEGFGRTRRE 774
Query: 663 AQRQAAEGSIKHLANVYMLRVKSDSGSGHGDGSRFSNANENCFMGEINSFGGQPLAKDES 722
AQ AAE SIK+LAN+Y+ R K D+G+ HGD S++S+AN+N F+G +NSFG QPL KDE
Sbjct: 775 AQSVAAEASIKNLANIYISRAKPDNGALHGDASKYSSANDNGFLGHVNSFGSQPLPKDEI 834
Query: 723 L----SSEPSKLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVY 778
L SSE S L+DPRLE SKK M SV+ALKE CM EGLGV F Q P S+NSVQ EV+
Sbjct: 835 LSYSDSSEQSGLLDPRLESSKKSMSSVNALKEFCMMEGLGVNFLAQTPLSSNSVQNAEVH 894
Query: 779 AQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSMFGQFPQKHQGSPRSLQGMPNKRLK 838
AQVEIDGQV+GKGIGST+DEAKMQAAEKALGSLR+ FG+FP K QGSPR + GMPNK LK
Sbjct: 895 AQVEIDGQVMGKGIGSTFDEAKMQAAEKALGSLRTTFGRFPPKRQGSPRPVPGMPNKHLK 954
Query: 839 PEFPRVLQRMPPSGRYPKNAPPVP 862
PEFPRVLQRMP S RYPKNAPPVP
Sbjct: 955 PEFPRVLQRMPSSARYPKNAPPVP 978
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521333|ref|XP_003529311.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224076842|ref|XP_002305017.1| predicted protein [Populus trichocarpa] gi|222847981|gb|EEE85528.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356548751|ref|XP_003542763.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356555137|ref|XP_003545893.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356549363|ref|XP_003543063.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|147832855|emb|CAN72816.1| hypothetical protein VITISV_004100 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297803978|ref|XP_002869873.1| hypothetical protein ARALYDRAFT_492708 [Arabidopsis lyrata subsp. lyrata] gi|297315709|gb|EFH46132.1| hypothetical protein ARALYDRAFT_492708 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|79481163|ref|NP_193898.3| RNA polymerase II C-terminal domain phosphatase-like 1 [Arabidopsis thaliana] gi|75111335|sp|Q5YDB6.1|CPL1_ARATH RecName: Full=RNA polymerase II C-terminal domain phosphatase-like 1; Short=FCP-like 1; AltName: Full=Carboxyl-terminal phosphatase-like 1; Short=AtCPL1; Short=CTD phosphatase-like 1; AltName: Full=Protein FIERY 2; AltName: Full=Protein JASMONATE OVEREXPRESSING 1 gi|49175305|gb|AAT52022.1| C-terminal domain phosphatase-like 1 [Arabidopsis thaliana] gi|332659088|gb|AEE84488.1| RNA polymerase II C-terminal domain phosphatase-like 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|110738453|dbj|BAF01152.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 862 | ||||||
| TAIR|locus:2119053 | 967 | CPL1 "C-terminal domain phosph | 0.982 | 0.875 | 0.637 | 1.4e-286 |
| TAIR|locus:2119053 CPL1 "C-terminal domain phosphatase-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2753 (974.2 bits), Expect = 1.4e-286, P = 1.4e-286
Identities = 551/864 (63%), Positives = 647/864 (74%)
Query: 1 MPLGLTEELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIV 60
M LG EELHLVAMYS N + PCFWAFSV G+Y+SCL MLNLRCLGIVFDLDETL+V
Sbjct: 110 MLLG-GEELHLVAMYSENIKNDRPCFWAFSVAPGIYDSCLVMLNLRCLGIVFDLDETLVV 168
Query: 61 ANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVI 120
ANTMRSFED+I+ R+I+ E+DPQR+A + AE+KRYQDDKN+LKQY E+DQV ENG+VI
Sbjct: 169 ANTMRSFEDKIDGFQRRINNEMDPQRLAVIVAEMKRYQDDKNLLKQYIESDQVVENGEVI 228
Query: 121 KVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTA 180
KVQSE+VPALSD+HQ LVRPLIRLQEKNIILTRINP IRDTSVLVR+RP+WE+LRSYLTA
Sbjct: 229 KVQSEIVPALSDNHQPLVRPLIRLQEKNIILTRINPMIRDTSVLVRMRPSWEELRSYLTA 288
Query: 181 RGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDG 240
+GRKRFEVYVCTMAERDYALEMWRLLDPE NLINT +LL RIVCVKSG +KSLFNVF DG
Sbjct: 289 KGRKRFEVYVCTMAERDYALEMWRLLDPEGNLINTNDLLARIVCVKSGFKKSLFNVFLDG 348
Query: 241 TCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRG 300
TCHPKMALVIDDRLKVWD+KDQPRVHVVPAFAPYY+PQAEA A PVLCVARN+AC VRG
Sbjct: 349 TCHPKMALVIDDRLKVWDEKDQPRVHVVPAFAPYYSPQAEAA-ATPVLCVARNVACGVRG 407
Query: 301 GFFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADA 360
GFF++FD+ LL RI EISYE+D +DIPSPPDVS+YLVSEDD + NG KDPLSFDGMAD
Sbjct: 408 GFFRDFDDSLLPRIAEISYENDAEDIPSPPDVSHYLVSEDDTSGLNGNKDPLSFDGMADT 467
Query: 361 EVERRLKEXXXXXXXXXXXXXNLDPRLA-PFQYXXXXXXXXXX---XXXXQAAVMPLANM 416
EVERRLKE N+DPR+A P Q+ Q A+ P A M
Sbjct: 468 EVERRLKEAISASSAVLPAA-NIDPRIAAPVQFPMASASSVSVPVPVQVVQQAIQPSA-M 525
Query: 417 QFP--PATSLVKPLG---HVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQHGMDT 471
FP P +P H+ P E SLQSSPAREEGEVPESELDPDTRRRLLILQHG DT
Sbjct: 526 AFPSIPFQQPQQPTSIAKHLVPSEPSLQSSPAREEGEVPESELDPDTRRRLLILQHGQDT 585
Query: 472 RENAPSEAPFPARTQMQVSVPRVPSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQIEK 531
R+ APSE FP R +Q V SR WFPVEEEM P Q+ RAV KE+PL+SE + +EK
Sbjct: 586 RDPAPSEPSFPQRPPVQAPPSHVQSRNGWFPVEEEMDPAQIRRAVSKEYPLDSEMIHMEK 645
Query: 532 HRPPHPSFFPKIENPSTSDRP-HENQRMPKEALRRDDRLRLNHTLSDYQSFSGEEIPLXX 590
HRP HPSFF KI+N + SDR HEN+R PKE+LRRD++LR N+ L D F GE+
Sbjct: 646 HRPRHPSFFSKIDNSTQSDRMLHENRRPPKESLRRDEQLRSNNNLPDSHPFYGEDASWNQ 705
Query: 591 XXXXXXDVDFESGRDVSSTETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEAWFAGE 650
D+DF R VS+TET + VL IA+KCG KVE++P+LV+ST+L+FS+EAW + +
Sbjct: 706 SSSRNSDLDFLPERSVSATETSADVLHGIAIKCGAKVEYKPSLVSSTDLRFSVEAWLSNQ 765
Query: 651 KIGEGIGRTXXXXXXXXXXGSIKHLANVYMLRVKXXXXXXXXXXXRFSNANENCFMGEIN 710
KIGEGIG++ SI++LA+ YM R F+N EN MG N
Sbjct: 766 KIGEGIGKSRREALHKAAEASIQNLADGYM-RANGDPGPSHRDATPFTN--ENISMGNAN 822
Query: 711 SFGGQPLAKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQPPSSAN 770
+ QP A+DE+ S+ DPRLEGS + GS++AL+ELC +EGL + FQ Q ++
Sbjct: 823 ALNNQPFARDETALPVSSRPTDPRLEGSMRHTGSITALRELCASEGLEMAFQSQRQLPSD 882
Query: 771 SVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSMFGQFPQKHQGSPRSLQ 830
V +DE++AQVEIDG+V+G+G+GSTWDEA+MQAAE+AL S+RSM GQ K QGSPRS
Sbjct: 883 MVHRDELHAQVEIDGRVVGEGVGSTWDEARMQAAERALSSVRSMLGQPLHKRQGSPRSFG 942
Query: 831 GMPNKRLKPEFPRVLQRMPPSGRY 854
GM NKRLKP+F R LQRMP SGRY
Sbjct: 943 GMSNKRLKPDFQRSLQRMPSSGRY 966
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.134 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 862 806 0.00098 121 3 11 22 0.42 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 624 (66 KB)
Total size of DFA: 390 KB (2190 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 74.45u 0.12s 74.57t Elapsed: 00:00:03
Total cpu time: 74.45u 0.12s 74.57t Elapsed: 00:00:03
Start: Fri May 10 06:07:00 2013 End: Fri May 10 06:07:03 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5YDB6 | CPL1_ARATH | 3, ., 1, ., 3, ., 1, 6 | 0.6581 | 0.9802 | 0.8738 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.1.3.16 | 0.946 |
| 3rd Layer | 3.1.3 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 862 | |||
| TIGR02250 | 156 | TIGR02250, FCP1_euk, FCP1-like phosphatase, phosph | 4e-13 | |
| smart00358 | 67 | smart00358, DSRM, Double-stranded RNA binding moti | 3e-09 | |
| pfam00035 | 66 | pfam00035, dsrm, Double-stranded RNA binding motif | 9e-09 | |
| pfam00035 | 66 | pfam00035, dsrm, Double-stranded RNA binding motif | 5e-07 | |
| smart00358 | 67 | smart00358, DSRM, Double-stranded RNA binding moti | 7e-07 | |
| cd00048 | 68 | cd00048, DSRM, Double-stranded RNA binding motif | 1e-06 | |
| smart00577 | 148 | smart00577, CPDc, catalytic domain of ctd-like pho | 4e-06 | |
| cd00048 | 68 | cd00048, DSRM, Double-stranded RNA binding motif | 1e-05 | |
| TIGR02191 | 220 | TIGR02191, RNaseIII, ribonuclease III, bacterial | 2e-04 | |
| COG0571 | 235 | COG0571, Rnc, dsRNA-specific ribonuclease [Transcr | 0.001 |
| >gnl|CDD|131304 TIGR02250, FCP1_euk, FCP1-like phosphatase, phosphatase domain | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 4e-13
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 164 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIV 223
L +LRP L +L K +E++V TM R YA + +L+DP+ DRI+
Sbjct: 56 LTKLRPF---LHEFLK-EASKLYEMHVYTMGTRAYAQAIAKLIDPDGKYFG-----DRII 106
Query: 224 CVK-SGSR--KSLFNVFQDGTCHPKMALVIDDRLKVWD 258
SGS KSL +F M ++IDDR VW
Sbjct: 107 SRDESGSPHTKSLLRLFPADES---MVVIIDDREDVWP 141
|
This model represents the phosphatase domain of the humanRNA polymerase II subunit A C-terminal domain phosphatase (FCP1, ) and closely related phosphatases from eukaryotes including plants, fungi and slime mold. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDDppphW). This domain is classified as a "Class III" HAD, since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3.This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the pfam03031. Length = 156 |
| >gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif | Back alignment and domain information |
|---|
| >gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif | Back alignment and domain information |
|---|
| >gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif | Back alignment and domain information |
|---|
| >gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif | Back alignment and domain information |
|---|
| >gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif | Back alignment and domain information |
|---|
| >gnl|CDD|214729 smart00577, CPDc, catalytic domain of ctd-like phosphatases | Back alignment and domain information |
|---|
| >gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif | Back alignment and domain information |
|---|
| >gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial | Back alignment and domain information |
|---|
| >gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 862 | |||
| KOG0323 | 635 | consensus TFIIF-interacting CTD phosphatases, incl | 100.0 | |
| TIGR02250 | 156 | FCP1_euk FCP1-like phosphatase, phosphatase domain | 99.94 | |
| KOG3732 | 339 | consensus Staufen and related double-stranded-RNA- | 99.91 | |
| TIGR02251 | 162 | HIF-SF_euk Dullard-like phosphatase domain. This d | 99.78 | |
| PF03031 | 159 | NIF: NLI interacting factor-like phosphatase; Inte | 99.77 | |
| PHA02701 | 183 | ORF020 dsRNA-binding PKR inhibitor; Provisional | 99.58 | |
| smart00577 | 148 | CPDc catalytic domain of ctd-like phosphatases. | 99.56 | |
| PHA03103 | 183 | double-strand RNA-binding protein; Provisional | 99.51 | |
| COG5190 | 390 | FCP1 TFIIF-interacting CTD phosphatases, including | 99.47 | |
| smart00358 | 67 | DSRM Double-stranded RNA binding motif. | 99.46 | |
| cd00048 | 68 | DSRM Double-stranded RNA binding motif. Binding is | 99.45 | |
| PF00035 | 67 | dsrm: Double-stranded RNA binding motif; InterPro: | 99.44 | |
| PF00035 | 67 | dsrm: Double-stranded RNA binding motif; InterPro: | 99.43 | |
| PHA02701 | 183 | ORF020 dsRNA-binding PKR inhibitor; Provisional | 99.43 | |
| PHA03103 | 183 | double-strand RNA-binding protein; Provisional | 99.43 | |
| cd00048 | 68 | DSRM Double-stranded RNA binding motif. Binding is | 99.41 | |
| KOG2777 | 542 | consensus tRNA-specific adenosine deaminase 1 [RNA | 99.41 | |
| PRK12371 | 235 | ribonuclease III; Reviewed | 99.41 | |
| smart00358 | 67 | DSRM Double-stranded RNA binding motif. | 99.41 | |
| KOG1605 | 262 | consensus TFIIF-interacting CTD phosphatase, inclu | 99.37 | |
| COG0571 | 235 | Rnc dsRNA-specific ribonuclease [Transcription] | 99.33 | |
| PRK14718 | 467 | ribonuclease III; Provisional | 99.28 | |
| PRK12372 | 413 | ribonuclease III; Reviewed | 99.25 | |
| TIGR02245 | 195 | HAD_IIID1 HAD-superfamily subfamily IIID hydrolase | 99.18 | |
| PRK12371 | 235 | ribonuclease III; Reviewed | 99.16 | |
| PRK00102 | 229 | rnc ribonuclease III; Reviewed | 99.15 | |
| COG0571 | 235 | Rnc dsRNA-specific ribonuclease [Transcription] | 99.15 | |
| TIGR02191 | 220 | RNaseIII ribonuclease III, bacterial. This family | 99.1 | |
| PRK00102 | 229 | rnc ribonuclease III; Reviewed | 99.06 | |
| PRK14718 | 467 | ribonuclease III; Provisional | 99.06 | |
| PRK12372 | 413 | ribonuclease III; Reviewed | 99.05 | |
| TIGR02191 | 220 | RNaseIII ribonuclease III, bacterial. This family | 98.99 | |
| KOG3732 | 339 | consensus Staufen and related double-stranded-RNA- | 98.88 | |
| PF14709 | 80 | DND1_DSRM: double strand RNA binding domain from D | 98.84 | |
| KOG4334 | 650 | consensus Uncharacterized conserved protein, conta | 98.69 | |
| PF14709 | 80 | DND1_DSRM: double strand RNA binding domain from D | 98.37 | |
| KOG1817 | 533 | consensus Ribonuclease [RNA processing and modific | 98.0 | |
| KOG3792 | 816 | consensus Transcription factor NFAT, subunit NF90 | 97.96 | |
| TIGR01489 | 188 | DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent | 97.95 | |
| KOG2832 | 393 | consensus TFIIF-interacting CTD phosphatase, inclu | 97.79 | |
| TIGR02253 | 221 | CTE7 HAD superfamily (subfamily IA) hydrolase, TIG | 97.77 | |
| TIGR01685 | 174 | MDP-1 magnesium-dependent phosphatase-1. This mode | 97.7 | |
| KOG2777 | 542 | consensus tRNA-specific adenosine deaminase 1 [RNA | 97.65 | |
| PF13419 | 176 | HAD_2: Haloacid dehalogenase-like hydrolase; PDB: | 97.64 | |
| PLN02770 | 248 | haloacid dehalogenase-like hydrolase family protei | 97.58 | |
| TIGR03351 | 220 | PhnX-like phosphonatase-like hydrolase. This clade | 97.58 | |
| TIGR01454 | 205 | AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes | 97.56 | |
| TIGR01449 | 213 | PGP_bact 2-phosphoglycolate phosphatase, prokaryot | 97.56 | |
| TIGR01509 | 183 | HAD-SF-IA-v3 haloacid dehalogenase superfamily, su | 97.51 | |
| TIGR01548 | 197 | HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, | 97.51 | |
| COG5190 | 390 | FCP1 TFIIF-interacting CTD phosphatases, including | 97.51 | |
| PLN03243 | 260 | haloacid dehalogenase-like hydrolase; Provisional | 97.49 | |
| TIGR01993 | 184 | Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These | 97.47 | |
| PRK13288 | 214 | pyrophosphatase PpaX; Provisional | 97.47 | |
| TIGR01549 | 154 | HAD-SF-IA-v1 haloacid dehalogenase superfamily, su | 97.46 | |
| TIGR01491 | 201 | HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa | 97.41 | |
| PRK13225 | 273 | phosphoglycolate phosphatase; Provisional | 97.4 | |
| PRK14988 | 224 | GMP/IMP nucleotidase; Provisional | 97.39 | |
| PLN02575 | 381 | haloacid dehalogenase-like hydrolase | 97.38 | |
| PRK13223 | 272 | phosphoglycolate phosphatase; Provisional | 97.37 | |
| TIGR02254 | 224 | YjjG/YfnB HAD superfamily (subfamily IA) hydrolase | 97.37 | |
| TIGR00338 | 219 | serB phosphoserine phosphatase SerB. Phosphoserine | 97.33 | |
| PLN02954 | 224 | phosphoserine phosphatase | 97.32 | |
| TIGR01428 | 198 | HAD_type_II 2-haloalkanoic acid dehalogenase, type | 97.3 | |
| PRK10826 | 222 | 2-deoxyglucose-6-phosphatase; Provisional | 97.28 | |
| PRK13222 | 226 | phosphoglycolate phosphatase; Provisional | 97.26 | |
| PRK11587 | 218 | putative phosphatase; Provisional | 97.25 | |
| cd01427 | 139 | HAD_like Haloacid dehalogenase-like hydrolases. Th | 97.25 | |
| TIGR02252 | 203 | DREG-2 REG-2-like, HAD superfamily (subfamily IA) | 97.22 | |
| PLN02940 | 382 | riboflavin kinase | 97.2 | |
| TIGR01422 | 253 | phosphonatase phosphonoacetaldehyde hydrolase. Thi | 97.16 | |
| KOG3769 | 333 | consensus Ribonuclease III domain proteins [Transl | 97.16 | |
| TIGR01488 | 177 | HAD-SF-IB Haloacid Dehalogenase superfamily, subfa | 97.15 | |
| PRK13226 | 229 | phosphoglycolate phosphatase; Provisional | 97.12 | |
| KOG1817 | 533 | consensus Ribonuclease [RNA processing and modific | 97.12 | |
| COG0546 | 220 | Gph Predicted phosphatases [General function predi | 97.11 | |
| PRK09449 | 224 | dUMP phosphatase; Provisional | 97.08 | |
| PRK10725 | 188 | fructose-1-P/6-phosphogluconate phosphatase; Provi | 96.99 | |
| TIGR01990 | 185 | bPGM beta-phosphoglucomutase. The enzyme from L. l | 96.99 | |
| KOG4334 | 650 | consensus Uncharacterized conserved protein, conta | 96.88 | |
| PRK09552 | 219 | mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp | 96.83 | |
| PRK10563 | 221 | 6-phosphogluconate phosphatase; Provisional | 96.82 | |
| KOG3769 | 333 | consensus Ribonuclease III domain proteins [Transl | 96.8 | |
| COG1011 | 229 | Predicted hydrolase (HAD superfamily) [General fun | 96.76 | |
| PRK13582 | 205 | thrH phosphoserine phosphatase; Provisional | 96.73 | |
| TIGR01533 | 266 | lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil | 96.72 | |
| COG4996 | 164 | Predicted phosphatase [General function prediction | 96.48 | |
| PHA03398 | 303 | viral phosphatase superfamily protein; Provisional | 96.47 | |
| TIGR02247 | 211 | HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li | 96.37 | |
| PHA02597 | 197 | 30.2 hypothetical protein; Provisional | 96.36 | |
| TIGR01493 | 175 | HAD-SF-IA-v2 Haloacid dehalogenase superfamily, su | 96.31 | |
| PRK08238 | 479 | hypothetical protein; Validated | 96.29 | |
| TIGR01684 | 301 | viral_ppase viral phosphatase. These proteins also | 96.26 | |
| TIGR03333 | 214 | salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl | 96.15 | |
| PRK09456 | 199 | ?-D-glucose-1-phosphatase; Provisional | 96.1 | |
| TIGR02137 | 203 | HSK-PSP phosphoserine phosphatase/homoserine phosp | 95.89 | |
| COG0637 | 221 | Predicted phosphatase/phosphohexomutase [General f | 95.81 | |
| PF06888 | 234 | Put_Phosphatase: Putative Phosphatase; InterPro: I | 95.46 | |
| PRK10748 | 238 | flavin mononucleotide phosphatase; Provisional | 95.44 | |
| COG0560 | 212 | SerB Phosphoserine phosphatase [Amino acid transpo | 95.43 | |
| PRK11133 | 322 | serB phosphoserine phosphatase; Provisional | 95.33 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 95.26 | |
| TIGR01686 | 320 | FkbH FkbH-like domain. The C-terminal portion of t | 95.2 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 95.17 | |
| TIGR01672 | 237 | AphA HAD superfamily (subfamily IIIB) phosphatase, | 95.07 | |
| TIGR01490 | 202 | HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrol | 95.05 | |
| KOG0323 | 635 | consensus TFIIF-interacting CTD phosphatases, incl | 94.9 | |
| KOG3109 | 244 | consensus Haloacid dehalogenase-like hydrolase [Ge | 94.79 | |
| TIGR01681 | 128 | HAD-SF-IIIC HAD-superfamily phosphatase, subfamily | 94.38 | |
| PRK11009 | 237 | aphA acid phosphatase/phosphotransferase; Provisio | 94.25 | |
| PRK11590 | 211 | hypothetical protein; Provisional | 94.09 | |
| PF00702 | 215 | Hydrolase: haloacid dehalogenase-like hydrolase; I | 92.64 | |
| PF03368 | 90 | Dicer_dimer: Dicer dimerisation domain; InterPro: | 91.19 | |
| PF12689 | 169 | Acid_PPase: Acid Phosphatase; InterPro: IPR010036 | 90.84 | |
| PRK06698 | 459 | bifunctional 5'-methylthioadenosine/S-adenosylhomo | 90.53 | |
| TIGR02009 | 185 | PGMB-YQAB-SF beta-phosphoglucomutase family hydrol | 90.3 | |
| PRK13478 | 267 | phosphonoacetaldehyde hydrolase; Provisional | 89.5 | |
| PF05152 | 297 | DUF705: Protein of unknown function (DUF705); Inte | 89.29 | |
| TIGR01691 | 220 | enolase-ppase 2,3-diketo-5-methylthio-1-phosphopen | 89.22 | |
| TIGR01675 | 229 | plant-AP plant acid phosphatase. This model explic | 88.71 | |
| PF12710 | 192 | HAD: haloacid dehalogenase-like hydrolase; PDB: 3P | 87.9 | |
| TIGR01261 | 161 | hisB_Nterm histidinol-phosphatase. This model desc | 86.98 | |
| PLN02779 | 286 | haloacid dehalogenase-like hydrolase family protei | 86.79 | |
| PF03368 | 90 | Dicer_dimer: Dicer dimerisation domain; InterPro: | 86.41 | |
| PF14954 | 252 | LIX1: Limb expression 1 | 86.11 | |
| TIGR00099 | 256 | Cof-subfamily Cof subfamily of IIB subfamily of ha | 85.17 | |
| KOG3120 | 256 | consensus Predicted haloacid dehalogenase-like hyd | 82.48 | |
| PLN02811 | 220 | hydrolase | 81.12 | |
| TIGR01656 | 147 | Histidinol-ppas histidinol-phosphate phosphatase f | 80.68 | |
| PHA02530 | 300 | pseT polynucleotide kinase; Provisional | 80.14 |
| >KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-54 Score=488.76 Aligned_cols=476 Identities=28% Similarity=0.372 Sum_probs=373.8
Q ss_pred CCCCCceeEEEEeeccCCCCCcceEEEEecccchHHHHHHHHhccceeEEEeCcchhhhhccccchHHHHHHHHhhhccC
Q 002970 2 PLGLTEELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTE 81 (862)
Q Consensus 2 ~~g~~~e~~lva~~~~~~~~~~p~f~~~~~~~~~~~~~~~ll~~r~L~lV~DLDeTLi~a~t~~~~e~ri~~l~~~~~~~ 81 (862)
.+| .++.|+|||.+..-.. .+|||+|.|..|+|+.|..+|+.+|...++||++|++.+++|.+|.++|.+...||.+.
T Consensus 68 ~~~-~~~~~~v~~~~~~~~~-~~~C~H~~v~~GlC~~Cg~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 145 (635)
T KOG0323|consen 68 LLG-RDLEKKVALISGVSSS-TSCCEHFTVFGGLCASCGKDLESLQGRSFDYLVKGLQLSNEMVAFTKTLTTQFSSLNRK 145 (635)
T ss_pred ccc-cchhhhhccccccccc-cCCccceeecccHHHHHHHHHHHhhccchhcccchhhhhhhhhhhhhHHHHHHHHHhhh
Confidence 356 7889999999998643 69999999999999999999999999999999999999999999999999999999766
Q ss_pred CChhhhhhhHHHHHHhhhhHHHHHHHhhcCccccCCeEEEeecccccCCCccccccccceeeccccceeeeecCCCCCCc
Q 002970 82 VDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDT 161 (862)
Q Consensus 82 ~dp~~~~~~~~e~kr~~~d~~lL~q~~~~d~v~~ng~~~~~q~E~~~~~~d~~~~~~rpvirl~~~n~~ltrI~P~~r~~ 161 (862)
. +++++++...|.+|+..+.+..+++-++.+.+.+ +.|..+++|+|..+.+
T Consensus 146 ~-----------L~lv~Dld~tllh~~~~~~l~e~~~~l~~~~~~~------------------~sn~dl~~~~~~~~~~ 196 (635)
T KOG0323|consen 146 K-----------LHLVLDLDHTLLHTILKSDLSETEKYLKEEAESV------------------ESNKDLFRFNPLGHDT 196 (635)
T ss_pred c-----------ceeehhhhhHHHHhhccchhhhhhhhcccccccc------------------cccccceeecccCCCc
Confidence 4 7888888999999999999999998888777664 3477899999999999
Q ss_pred eEEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC---Cccchhhhcc
Q 002970 162 SVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG---SRKSLFNVFQ 238 (862)
Q Consensus 162 ~~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~---~~KsL~~lfp 238 (862)
+|||||||||++ ||+ +++++|||||||||+|.||++||+||||+|.||+ +|||||+++ ..++|..+|+
T Consensus 197 ~~~vKlRP~~~e---fL~-~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~-----dRIisrde~~~~kt~dL~~~~p 267 (635)
T KOG0323|consen 197 EYLVKLRPFVHE---FLK-EANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFG-----DRIISRDESPFFKTLDLVLLFP 267 (635)
T ss_pred eEEEEeCccHHH---HHH-HHHhhceeEEEeccchHHHHHHHHHhCCCCcccc-----ceEEEecCCCcccccccccCCC
Confidence 999999999999 999 9999999999999999999999999999999999 999999765 4466666776
Q ss_pred CCCCCCcEEEEEcCCcccCCCCCCCCeEEecccccccCchhhhccccchHHHHHHHHhhhcccchhcchhhhhhcccccc
Q 002970 239 DGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEIS 318 (862)
Q Consensus 239 ~~~~~~~~vVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh~~FF~~~de~l~~ri~ev~ 318 (862)
|+++||||||||.+||+++++ |+++|.+|.||....+-.+. +.+|.+++++|.++++||+++|+.+..+|.++-
T Consensus 268 ---~g~smvvIIDDr~dVW~~~~~-nLI~i~~y~yF~~~gd~nap--~~~~~~~~~~~~~~~~~~k~~~~s~~~~~~~~~ 341 (635)
T KOG0323|consen 268 ---CGDSMVVIIDDRSDVWPDHKR-NLIQIAPYPYFSGQGDINAP--PPLHVLRNVACSVRGAFFKEFDPSLKSRISEVR 341 (635)
T ss_pred ---CCCccEEEEeCccccccCCCc-ceEEeeeeecccCcccccCC--cccccccchhcccccccccccCccccccccccc
Confidence 999999999999999999965 67789999777654332222 789999999999999999999999999999999
Q ss_pred ccCcCCCCCCCCccccceeccccccccCCCCCccCCCCcchHHHHHHHHHhhhhhccccccccccCCCCCCCcccccCCC
Q 002970 319 YEDDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIAASATISSAVANLDPRLAPFQYTMPSSS 398 (862)
Q Consensus 319 ~e~~~~~~~~~pDv~~~l~~e~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 398 (862)
|+++-.+.+..+++ -+++|..+...|||.+.
T Consensus 342 ~~~~~~~~~~~~~~-----------~~~~~~~p~~~~~~~~~-------------------------------------- 372 (635)
T KOG0323|consen 342 YEDDDESNPTSYSV-----------ELSANPGPLKQDGMDEF-------------------------------------- 372 (635)
T ss_pred ccccccccCccccc-----------ccccccCcccccccccc--------------------------------------
Confidence 99999999999988 36777775567776654
Q ss_pred CCCCcCCCccccccccccCCCCCccccccccccCCCCCCcCCCcccccCCCCCCCCChhhhhhhhhhhcCCCcCCCCCCC
Q 002970 399 STTTLPTSQAAVMPLANMQFPPATSLVKPLGHVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSE 478 (862)
Q Consensus 399 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~psl~~sp~reege~~e~e~d~dtrrrllilqhgqd~r~~~~~~ 478 (862)
||+.
T Consensus 373 --------------------------------------------------~~~~-------------------------- 376 (635)
T KOG0323|consen 373 --------------------------------------------------VPEE-------------------------- 376 (635)
T ss_pred --------------------------------------------------cccc--------------------------
Confidence 0000
Q ss_pred CCCCCCCCccccCCccCCCCCccccccccCccccCCCCCCCCCCCccccc-cccCCCCCCCCCCCCCCCCCCCC-ccccc
Q 002970 479 APFPARTQMQVSVPRVPSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQ-IEKHRPPHPSFFPKIENPSTSDR-PHENQ 556 (862)
Q Consensus 479 pp~~~r~p~q~s~~~v~~~g~w~~ve~~~~~~~~nr~~~~~~~~~~~~~~-~~k~~~~~~s~~~~~~~~~~sd~-~~~~q 556 (862)
+.+++.+.+..+..+.+.+.++...+ ..+..+-|+.||.+.+ ...+. .+.+-
T Consensus 377 ------------------------~~~~~~~~s~~~~~~de~~~D~~L~~~~kvl~~vH~~ff~~~~--~~~e~~~~~Dv 430 (635)
T KOG0323|consen 377 ------------------------NAPEARSGSYREKKSDESDEDGELANLLKVLKPVHKGFFAKYD--EVEETLESPDV 430 (635)
T ss_pred ------------------------cchhhcccccccccccccccchhHHHHhhhhcccchhhhhccc--cccccccCCCh
Confidence 11122222222222333333444444 3445788999999865 22333 45555
Q ss_pred cCCchhcchhhhhhcccCCCCCCCCCCCCCCccCCCCCCCCccccCCccCCCCCCchHHHHHHHHhcCCCeEEEEeeecC
Q 002970 557 RMPKEALRRDDRLRLNHTLSDYQSFSGEEIPLSRSSSSSRDVDFESGRDVSSTETPSGVLQDIAMKCGTKVEFRPALVAS 636 (862)
Q Consensus 557 ~~p~~~~~~~~~~~~n~~~~~~~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~n~KS~LQE~~QK~~~~l~Y~~v~~~~ 636 (862)
|.......+.....-|-..|+-+|+.....+ +......-+-+....+.+..-.++.++.+++....|+......
T Consensus 431 r~~i~~~~~~v~~~~~~vfSg~~P~~~~~~~------s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k~~~a~~~~~ 504 (635)
T KOG0323|consen 431 RLLIPELRTKVLKGSQIVFSGLHPTGSTDES------ADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKKVYKAVVSGS 504 (635)
T ss_pred hhhhhhhhhHHhhccceeecccccCcCCcch------hhhhhhhhcccceecccccchhhhHHhhccCcceeeccccccc
Confidence 5554444445555556667777776654333 2222223333356677888899999999999888888654433
Q ss_pred CCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhh
Q 002970 637 TELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYM 680 (862)
Q Consensus 637 Hdk~Ftv~V~i~G~~~G~G~GkSKKeAEq~AA~~AL~~L~~~~~ 680 (862)
-.-.|...+|--.++||.|.++.++.+-..+|....+.+...+.
T Consensus 505 ~~Vv~~~wl~~~~e~w~~v~ek~~~l~~~~~~~~~~~~~a~~~~ 548 (635)
T KOG0323|consen 505 AKVVNAAWLWRSLEKWGKVEEKLEPLDDDQRAAIRRESLARLYE 548 (635)
T ss_pred eeEechhHHHHHHHHhcchhcccccccccccchhcccchhhhhh
Confidence 44567777888889999999999999999998888777765544
|
|
| >TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain | Back alignment and domain information |
|---|
| >KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription] | Back alignment and domain information |
|---|
| >TIGR02251 HIF-SF_euk Dullard-like phosphatase domain | Back alignment and domain information |
|---|
| >PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear | Back alignment and domain information |
|---|
| >PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional | Back alignment and domain information |
|---|
| >smart00577 CPDc catalytic domain of ctd-like phosphatases | Back alignment and domain information |
|---|
| >PHA03103 double-strand RNA-binding protein; Provisional | Back alignment and domain information |
|---|
| >COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] | Back alignment and domain information |
|---|
| >smart00358 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
| >cd00048 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
| >PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions [] | Back alignment and domain information |
|---|
| >PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions [] | Back alignment and domain information |
|---|
| >PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional | Back alignment and domain information |
|---|
| >PHA03103 double-strand RNA-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd00048 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
| >KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12371 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >smart00358 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
| >KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription] | Back alignment and domain information |
|---|
| >COG0571 Rnc dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
| >PRK14718 ribonuclease III; Provisional | Back alignment and domain information |
|---|
| >PRK12372 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245 | Back alignment and domain information |
|---|
| >PRK12371 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >PRK00102 rnc ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >COG0571 Rnc dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
| >TIGR02191 RNaseIII ribonuclease III, bacterial | Back alignment and domain information |
|---|
| >PRK00102 rnc ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >PRK14718 ribonuclease III; Provisional | Back alignment and domain information |
|---|
| >PRK12372 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >TIGR02191 RNaseIII ribonuclease III, bacterial | Back alignment and domain information |
|---|
| >KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription] | Back alignment and domain information |
|---|
| >PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 | Back alignment and domain information |
|---|
| >KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 | Back alignment and domain information |
|---|
| >KOG1817 consensus Ribonuclease [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase | Back alignment and domain information |
|---|
| >KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription] | Back alignment and domain information |
|---|
| >TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253 | Back alignment and domain information |
|---|
| >TIGR01685 MDP-1 magnesium-dependent phosphatase-1 | Back alignment and domain information |
|---|
| >KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A | Back alignment and domain information |
|---|
| >PLN02770 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
| >TIGR03351 PhnX-like phosphonatase-like hydrolase | Back alignment and domain information |
|---|
| >TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein | Back alignment and domain information |
|---|
| >TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic | Back alignment and domain information |
|---|
| >TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED | Back alignment and domain information |
|---|
| >TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548 | Back alignment and domain information |
|---|
| >COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] | Back alignment and domain information |
|---|
| >PLN03243 haloacid dehalogenase-like hydrolase; Provisional | Back alignment and domain information |
|---|
| >TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase | Back alignment and domain information |
|---|
| >PRK13288 pyrophosphatase PpaX; Provisional | Back alignment and domain information |
|---|
| >TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E | Back alignment and domain information |
|---|
| >TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal | Back alignment and domain information |
|---|
| >PRK13225 phosphoglycolate phosphatase; Provisional | Back alignment and domain information |
|---|
| >PRK14988 GMP/IMP nucleotidase; Provisional | Back alignment and domain information |
|---|
| >PLN02575 haloacid dehalogenase-like hydrolase | Back alignment and domain information |
|---|
| >PRK13223 phosphoglycolate phosphatase; Provisional | Back alignment and domain information |
|---|
| >TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254 | Back alignment and domain information |
|---|
| >TIGR00338 serB phosphoserine phosphatase SerB | Back alignment and domain information |
|---|
| >PLN02954 phosphoserine phosphatase | Back alignment and domain information |
|---|
| >TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II | Back alignment and domain information |
|---|
| >PRK10826 2-deoxyglucose-6-phosphatase; Provisional | Back alignment and domain information |
|---|
| >PRK13222 phosphoglycolate phosphatase; Provisional | Back alignment and domain information |
|---|
| >PRK11587 putative phosphatase; Provisional | Back alignment and domain information |
|---|
| >cd01427 HAD_like Haloacid dehalogenase-like hydrolases | Back alignment and domain information |
|---|
| >TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase | Back alignment and domain information |
|---|
| >PLN02940 riboflavin kinase | Back alignment and domain information |
|---|
| >TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase | Back alignment and domain information |
|---|
| >KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like | Back alignment and domain information |
|---|
| >PRK13226 phosphoglycolate phosphatase; Provisional | Back alignment and domain information |
|---|
| >KOG1817 consensus Ribonuclease [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG0546 Gph Predicted phosphatases [General function prediction only] | Back alignment and domain information |
|---|
| >PRK09449 dUMP phosphatase; Provisional | Back alignment and domain information |
|---|
| >PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional | Back alignment and domain information |
|---|
| >TIGR01990 bPGM beta-phosphoglucomutase | Back alignment and domain information |
|---|
| >KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only] | Back alignment and domain information |
|---|
| >PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed | Back alignment and domain information |
|---|
| >PRK10563 6-phosphogluconate phosphatase; Provisional | Back alignment and domain information |
|---|
| >KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >PRK13582 thrH phosphoserine phosphatase; Provisional | Back alignment and domain information |
|---|
| >TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family | Back alignment and domain information |
|---|
| >COG4996 Predicted phosphatase [General function prediction only] | Back alignment and domain information |
|---|
| >PHA03398 viral phosphatase superfamily protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase | Back alignment and domain information |
|---|
| >PHA02597 30 | Back alignment and domain information |
|---|
| >TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase | Back alignment and domain information |
|---|
| >PRK08238 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >TIGR01684 viral_ppase viral phosphatase | Back alignment and domain information |
|---|
| >TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase | Back alignment and domain information |
|---|
| >PRK09456 ?-D-glucose-1-phosphatase; Provisional | Back alignment and domain information |
|---|
| >TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein | Back alignment and domain information |
|---|
| >COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only] | Back alignment and domain information |
|---|
| >PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 [] | Back alignment and domain information |
|---|
| >PRK10748 flavin mononucleotide phosphatase; Provisional | Back alignment and domain information |
|---|
| >COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK11133 serB phosphoserine phosphatase; Provisional | Back alignment and domain information |
|---|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
| >TIGR01686 FkbH FkbH-like domain | Back alignment and domain information |
|---|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
| >TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672 | Back alignment and domain information |
|---|
| >TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490 | Back alignment and domain information |
|---|
| >KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] | Back alignment and domain information |
|---|
| >KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC | Back alignment and domain information |
|---|
| >PRK11009 aphA acid phosphatase/phosphotransferase; Provisional | Back alignment and domain information |
|---|
| >PRK11590 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase) | Back alignment and domain information |
|---|
| >PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases | Back alignment and domain information |
|---|
| >PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea | Back alignment and domain information |
|---|
| >PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated | Back alignment and domain information |
|---|
| >TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase | Back alignment and domain information |
|---|
| >PRK13478 phosphonoacetaldehyde hydrolase; Provisional | Back alignment and domain information |
|---|
| >PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins | Back alignment and domain information |
|---|
| >TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase | Back alignment and domain information |
|---|
| >TIGR01675 plant-AP plant acid phosphatase | Back alignment and domain information |
|---|
| >PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B | Back alignment and domain information |
|---|
| >TIGR01261 hisB_Nterm histidinol-phosphatase | Back alignment and domain information |
|---|
| >PLN02779 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
| >PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases | Back alignment and domain information |
|---|
| >PF14954 LIX1: Limb expression 1 | Back alignment and domain information |
|---|
| >TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily | Back alignment and domain information |
|---|
| >KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02811 hydrolase | Back alignment and domain information |
|---|
| >TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain | Back alignment and domain information |
|---|
| >PHA02530 pseT polynucleotide kinase; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 862 | ||||
| 3ef1_A | 442 | The Structure Of Fcp1, An Essential Rna Polymerase | 4e-04 | ||
| 3ef0_A | 372 | The Structure Of Fcp1, An Essential Rna Polymerase | 7e-04 |
| >pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 442 | Back alignment and structure |
|
| >pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 372 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 80.3 bits (197), Expect = 2e-15
Identities = 93/709 (13%), Positives = 190/709 (26%), Gaps = 243/709 (34%)
Query: 66 SFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQV----------NE 115
++D + D + + M + ++ +I+ E
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 116 NGKVIKVQSEVVPALSDSHQALVRPL-IRLQEKNIILTR----INPQIRDTSVLV----- 165
VQ V L +++ L+ P+ ++ +++ + D V
Sbjct: 77 EM----VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 166 RLRPAWEDLRSYLTARGRKRFEVYVCTM---------AE--RDYALEM-------W---- 203
RL+P + LR L R V + + + Y ++ W
Sbjct: 133 RLQPYLK-LRQALL-ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 204 RLLDPESNLINTKELLDRIVC-------------VKSGSRKSLFNVFQDGTCHPKMALVI 250
PE+ L ++LL +I ++ S ++ + LV+
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 251 DDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIAC-------------- 296
+ V + K AF N + +L R
Sbjct: 251 LN---VQNAK------AWNAF----------NLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 297 -NVRGGFFKEFDEGLLQRIPEISYED---DVKDIPSPPDVSNYLVSE---DDAATANGIK 349
+ + + LL + + +D +V +P +S +++E D AT + K
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLS--IIAESIRDGLATWDNWK 348
Query: 350 DPLSFDGMADAEVERRLKEAIAASATISSAVANLDPRLAPFQYTMPSSSSTTTLPTSQAA 409
++ D +L I +S + L+P + L +
Sbjct: 349 H-VNCD---------KLTTIIESS------LNVLEPAEYRKMFDR--------L-----S 379
Query: 410 VMPLANMQFPPATSLVKPLGHVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQ--- 466
V FPP P L ++ + L+ Q
Sbjct: 380 V-------FPP---------SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 467 -----HG--MDTRENAPSEAPFPARTQMQVSVPRVPSRGSWFPVEEEMSPRQLNRAVPKE 519
++ + +E + S+ V+ P+ + +
Sbjct: 424 STISIPSIYLELKVKLENEY------ALHRSI-----------VDHYNIPKTFD---SDD 463
Query: 520 FPLNSEAMQIEKHRPPH---------PSFFPKIENPSTSDRPHENQRMPKEALRRDD--- 567
H H + F + + R ++ +R D
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV---------FLDFRFLEQKIRHDSTAW 514
Query: 568 --RLRLNHTLSD---YQSFSGEEIPLSRSSSSSRDVDFESGRDVSSTETPSGVLQDIAMK 622
+ +TL Y+ + + P +E R V++ + D K
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDP-----------KYE--RLVNA-------ILDFLPK 554
Query: 623 CGTKVEFRPALVASTE---LQFSIEAWFAGEKIGEGIGRTRREAQRQAA 668
L+ S L+ ++ E I E EA +Q
Sbjct: 555 IEEN------LICSKYTDLLRIALM--AEDEAIFE-------EAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179 | Back alignment and structure |
|---|
| >1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179 | Back alignment and structure |
|---|
| >1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179 | Back alignment and structure |
|---|
| >3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442 | Back alignment and structure |
|---|
| >3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Length = 372 | Back alignment and structure |
|---|
| >1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97 | Back alignment and structure |
|---|
| >1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97 | Back alignment and structure |
|---|
| >1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76 | Back alignment and structure |
|---|
| >2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85 | Back alignment and structure |
|---|
| >2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85 | Back alignment and structure |
|---|
| >2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84 | Back alignment and structure |
|---|
| >2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236 | Back alignment and structure |
|---|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 | Back alignment and structure |
|---|
| >3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76 | Back alignment and structure |
|---|
| >2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232 | Back alignment and structure |
|---|
| >2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232 | Back alignment and structure |
|---|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 | Back alignment and structure |
|---|
| >1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 88 | Back alignment and structure |
|---|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 | Back alignment and structure |
|---|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 | Back alignment and structure |
|---|
| >1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 862 | |||
| 1qu6_A | 179 | Protein kinase PKR; dsRNA-binding domain, solution | 99.97 | |
| 3ef0_A | 372 | RNA polymerase II subunit A C-terminal domain phos | 99.97 | |
| 3ef1_A | 442 | RNA polymerase II subunit A C-terminal domain phos | 99.97 | |
| 2l3j_A | 236 | Double-stranded RNA-specific editase 1; editing, d | 99.94 | |
| 2yt4_A | 232 | Protein DGCR8; DSRBD, RNA binding domain, RNA bind | 99.94 | |
| 3qle_A | 204 | TIM50P; chaperone, mitochondrion, preprotein trans | 99.76 | |
| 2dix_A | 84 | Interferon-inducible double stranded RNA- dependen | 99.71 | |
| 3adj_A | 76 | F21M12.9 protein; HYL1, miRNA processing, RNA bind | 99.7 | |
| 1x49_A | 97 | Interferon-induced, double-stranded RNA- activated | 99.7 | |
| 2ght_A | 181 | Carboxy-terminal domain RNA polymerase II polypept | 99.7 | |
| 3adg_A | 73 | F21M12.9 protein; HYL1, miRNA processing mechanism | 99.67 | |
| 3llh_A | 90 | RISC-loading complex subunit tarbp2; DSRBD, DSRM, | 99.67 | |
| 1di2_A | 69 | XLRBPA, double stranded RNA binding protein A; pro | 99.67 | |
| 2cpn_A | 89 | TAR RNA-binding protein 2; double-stranded RNA bin | 99.67 | |
| 3adl_A | 88 | RISC-loading complex subunit tarbp2; TRBP2, miRNA | 99.66 | |
| 1x48_A | 88 | Interferon-induced, double-stranded RNA- activated | 99.66 | |
| 2hhl_A | 195 | CTD small phosphatase-like protein; CTD phosphatas | 99.66 | |
| 1t4n_A | 94 | Ribonuclease III; DSRBD, RNA-binding, hydrolase; N | 99.66 | |
| 1uhz_A | 89 | Staufen (RNA binding protein) homolog 2; DSRM, sta | 99.65 | |
| 2khx_A | 85 | Ribonuclease 3; drosha, RNA binding domain, hydrol | 99.65 | |
| 1ekz_A | 76 | DSRBDIII, maternal effect protein (staufen); struc | 99.65 | |
| 1x47_A | 98 | DGCR8 protein; structural genomics, DSRM domain, N | 99.65 | |
| 2l2n_A | 103 | Hyponastic leave 1; DSRBD, miRNA, RNA binding prot | 99.64 | |
| 3adj_A | 76 | F21M12.9 protein; HYL1, miRNA processing, RNA bind | 99.63 | |
| 1whq_A | 99 | RNA helicase A; double-stranded RNA binding domain | 99.63 | |
| 2b7t_A | 73 | Double-stranded RNA-specific editase 1; RNA editin | 99.62 | |
| 2cpn_A | 89 | TAR RNA-binding protein 2; double-stranded RNA bin | 99.62 | |
| 1t4o_A | 117 | Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro | 99.61 | |
| 1di2_A | 69 | XLRBPA, double stranded RNA binding protein A; pro | 99.61 | |
| 2khx_A | 85 | Ribonuclease 3; drosha, RNA binding domain, hydrol | 99.6 | |
| 3adl_A | 88 | RISC-loading complex subunit tarbp2; TRBP2, miRNA | 99.6 | |
| 3adg_A | 73 | F21M12.9 protein; HYL1, miRNA processing mechanism | 99.6 | |
| 2dmy_A | 97 | Spermatid perinuclear RNA-binding protein; DSRM do | 99.59 | |
| 1whn_A | 128 | Hypothetical protein riken cDNA 2310016K04; double | 99.58 | |
| 1x48_A | 88 | Interferon-induced, double-stranded RNA- activated | 99.58 | |
| 2l33_A | 91 | Interleukin enhancer-binding factor 3; structural | 99.58 | |
| 1x49_A | 97 | Interferon-induced, double-stranded RNA- activated | 99.58 | |
| 1ekz_A | 76 | DSRBDIII, maternal effect protein (staufen); struc | 99.58 | |
| 1uil_A | 113 | Double-stranded RNA-binding motif; structural geno | 99.58 | |
| 1uhz_A | 89 | Staufen (RNA binding protein) homolog 2; DSRM, sta | 99.58 | |
| 2dix_A | 84 | Interferon-inducible double stranded RNA- dependen | 99.56 | |
| 2ljh_A | 114 | Double-stranded RNA-specific editase ADAR; DSRBD, | 99.55 | |
| 2l2n_A | 103 | Hyponastic leave 1; DSRBD, miRNA, RNA binding prot | 99.54 | |
| 3shq_A | 320 | UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila | 99.53 | |
| 3llh_A | 90 | RISC-loading complex subunit tarbp2; DSRBD, DSRM, | 99.53 | |
| 1whq_A | 99 | RNA helicase A; double-stranded RNA binding domain | 99.52 | |
| 2b7v_A | 71 | Double-stranded RNA-specific editase 1; RNA editin | 99.52 | |
| 2b7t_A | 73 | Double-stranded RNA-specific editase 1; RNA editin | 99.49 | |
| 1x47_A | 98 | DGCR8 protein; structural genomics, DSRM domain, N | 99.49 | |
| 2b7v_A | 71 | Double-stranded RNA-specific editase 1; RNA editin | 99.48 | |
| 2dmy_A | 97 | Spermatid perinuclear RNA-binding protein; DSRM do | 99.47 | |
| 1t4n_A | 94 | Ribonuclease III; DSRBD, RNA-binding, hydrolase; N | 99.46 | |
| 1uil_A | 113 | Double-stranded RNA-binding motif; structural geno | 99.45 | |
| 3p1x_A | 75 | Interleukin enhancer-binding factor 3; structural | 99.44 | |
| 2ljh_A | 114 | Double-stranded RNA-specific editase ADAR; DSRBD, | 99.42 | |
| 2l33_A | 91 | Interleukin enhancer-binding factor 3; structural | 99.41 | |
| 1t4o_A | 117 | Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro | 99.41 | |
| 1whn_A | 128 | Hypothetical protein riken cDNA 2310016K04; double | 99.4 | |
| 1qu6_A | 179 | Protein kinase PKR; dsRNA-binding domain, solution | 99.39 | |
| 3p1x_A | 75 | Interleukin enhancer-binding factor 3; structural | 99.38 | |
| 1o0w_A | 252 | Ribonuclease III, RNAse III; TM1102, structural ge | 99.37 | |
| 2nug_A | 221 | Ribonuclease III, RNAse III; dsRNA, RNA interferen | 99.37 | |
| 3n3w_A | 248 | Ribonuclease III; nuclease domain, ribonuclase III | 99.24 | |
| 2nug_A | 221 | Ribonuclease III, RNAse III; dsRNA, RNA interferen | 99.24 | |
| 1o0w_A | 252 | Ribonuclease III, RNAse III; TM1102, structural ge | 99.23 | |
| 2yt4_A | 232 | Protein DGCR8; DSRBD, RNA binding domain, RNA bind | 99.21 | |
| 2a11_A | 242 | Ribonuclease III, RNAse III; nuclease domain, stru | 99.21 | |
| 2l3j_A | 236 | Double-stranded RNA-specific editase 1; editing, d | 99.17 | |
| 3n3w_A | 248 | Ribonuclease III; nuclease domain, ribonuclase III | 99.16 | |
| 2a11_A | 242 | Ribonuclease III, RNAse III; nuclease domain, stru | 99.08 | |
| 3rv0_A | 341 | K. polysporus DCR1; RNAse III enzyme, RNA binding | 98.98 | |
| 3c4b_A | 265 | Endoribonuclease dicer; RNAse, dsRNA binding prote | 98.93 | |
| 3rv0_A | 341 | K. polysporus DCR1; RNAse III enzyme, RNA binding | 98.67 | |
| 3c4b_A | 265 | Endoribonuclease dicer; RNAse, dsRNA binding prote | 98.56 | |
| 3kbb_A | 216 | Phosphorylated carbohydrates phosphatase TM_1254; | 97.88 | |
| 3m9l_A | 205 | Hydrolase, haloacid dehalogenase-like family; HAD | 97.84 | |
| 3ddh_A | 234 | Putative haloacid dehalogenase-like family hydrol; | 97.72 | |
| 3m1y_A | 217 | Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, | 97.55 | |
| 1rku_A | 206 | Homoserine kinase; phosphoserine phosphatase, phos | 97.49 | |
| 3e58_A | 214 | Putative beta-phosphoglucomutase; structu genomics | 97.48 | |
| 4dcc_A | 229 | Putative haloacid dehalogenase-like hydrolase; mag | 97.44 | |
| 2hdo_A | 209 | Phosphoglycolate phosphatase; NP_784602.1, structu | 97.42 | |
| 3kzx_A | 231 | HAD-superfamily hydrolase, subfamily IA, variant; | 97.42 | |
| 1nnl_A | 225 | L-3-phosphoserine phosphatase; PSP, HPSP, phospho- | 97.41 | |
| 2pib_A | 216 | Phosphorylated carbohydrates phosphatase TM_1254; | 97.38 | |
| 3s6j_A | 233 | Hydrolase, haloacid dehalogenase-like family; stru | 97.38 | |
| 3ed5_A | 238 | YFNB; APC60080, bacillus subtilis subsp. subtilis | 97.37 | |
| 3sd7_A | 240 | Putative phosphatase; structural genomics, haloaci | 97.36 | |
| 4ex6_A | 237 | ALNB; modified rossman fold, phosphatase, magnesiu | 97.32 | |
| 2nyv_A | 222 | Pgpase, PGP, phosphoglycolate phosphatase; structu | 97.32 | |
| 3u26_A | 234 | PF00702 domain protein; structural genomics, PSI-b | 97.31 | |
| 3qnm_A | 240 | Haloacid dehalogenase-like hydrolase; structural g | 97.22 | |
| 1zrn_A | 232 | L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud | 97.2 | |
| 1yns_A | 261 | E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo | 97.18 | |
| 4ap9_A | 201 | Phosphoserine phosphatase; hydrolase, haloacid deh | 97.17 | |
| 2w43_A | 201 | Hypothetical 2-haloalkanoic acid dehalogenase; hyd | 97.16 | |
| 2fea_A | 236 | 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate | 97.15 | |
| 3mc1_A | 226 | Predicted phosphatase, HAD family; PSI2, NYSGXRC, | 97.14 | |
| 2hsz_A | 243 | Novel predicted phosphatase; structural genomics, | 97.13 | |
| 3um9_A | 230 | Haloacid dehalogenase, type II; haloacid dehalogen | 97.13 | |
| 2zg6_A | 220 | Putative uncharacterized protein ST2620, probable | 97.12 | |
| 4eze_A | 317 | Haloacid dehalogenase-like hydrolase; magnesium bi | 97.11 | |
| 2no4_A | 240 | (S)-2-haloacid dehalogenase IVA; HAD superfamily, | 97.09 | |
| 2pke_A | 251 | Haloacid delahogenase-like family hydrolase; NP_63 | 97.07 | |
| 3umb_A | 233 | Dehalogenase-like hydrolase; 2.20A {Ralstonia sola | 97.05 | |
| 4eek_A | 259 | Beta-phosphoglucomutase-related protein; hydrolase | 97.05 | |
| 3fvv_A | 232 | Uncharacterized protein; unknown function, structu | 97.05 | |
| 2go7_A | 207 | Hydrolase, haloacid dehalogenase-like family; stru | 97.04 | |
| 3kd3_A | 219 | Phosphoserine phosphohydrolase-like protein; csgid | 97.02 | |
| 2b0c_A | 206 | Putative phosphatase; alpha-D-glucose-1-phosphate, | 97.01 | |
| 2hi0_A | 240 | Putative phosphoglycolate phosphatase; YP_619066.1 | 97.01 | |
| 2wm8_A | 187 | MDP-1, magnesium-dependent phosphatase 1; haloacid | 97.01 | |
| 3l5k_A | 250 | Protein GS1, haloacid dehalogenase-like hydrolase | 96.98 | |
| 3smv_A | 240 | S-(-)-azetidine-2-carboxylate hydrolase; haloacid | 96.96 | |
| 3nuq_A | 282 | Protein SSM1, putative nucleotide phosphatase; sup | 96.95 | |
| 3iru_A | 277 | Phoshonoacetaldehyde hydrolase like protein; phosp | 96.94 | |
| 2p11_A | 231 | Hypothetical protein; putative haloacid dehalogena | 96.94 | |
| 3k1z_A | 263 | Haloacid dehalogenase-like hydrolase domain-conta | 96.92 | |
| 3nas_A | 233 | Beta-PGM, beta-phosphoglucomutase; PSI, structural | 96.92 | |
| 2i6x_A | 211 | Hydrolase, haloacid dehalogenase-like family; HAD | 96.9 | |
| 1qq5_A | 253 | Protein (L-2-haloacid dehalogenase); hydrolase; 1. | 96.81 | |
| 3qxg_A | 243 | Inorganic pyrophosphatase; hydrolase, magnesium bi | 96.74 | |
| 3dv9_A | 247 | Beta-phosphoglucomutase; structural genomics, APC6 | 96.72 | |
| 4g9b_A | 243 | Beta-PGM, beta-phosphoglucomutase; HAD, putative p | 96.7 | |
| 3p96_A | 415 | Phosphoserine phosphatase SERB; ssgcid, structural | 96.66 | |
| 3umc_A | 254 | Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeru | 96.61 | |
| 3umg_A | 254 | Haloacid dehalogenase; defluorinase, hydrolase; 2. | 96.56 | |
| 3skx_A | 280 | Copper-exporting P-type ATPase B; P1B-ATPase, ATP | 96.52 | |
| 2fi1_A | 190 | Hydrolase, haloacid dehalogenase-like family; stru | 96.45 | |
| 3vay_A | 230 | HAD-superfamily hydrolase; rossmann fold, haloacid | 96.39 | |
| 2qlt_A | 275 | (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac | 96.34 | |
| 3bwv_A | 180 | Putative 5'(3')-deoxyribonucleotidase; NP_764060.1 | 96.22 | |
| 4gib_A | 250 | Beta-phosphoglucomutase; rossmann fold, HAD-like, | 96.19 | |
| 1l7m_A | 211 | Phosphoserine phosphatase; rossmann fold, four-hel | 95.78 | |
| 2g80_A | 253 | Protein UTR4; YEL038W, UTR4 protein (unknown trans | 95.78 | |
| 3n28_A | 335 | Phosphoserine phosphatase; HAD family hydrolase, s | 95.59 | |
| 2gmw_A | 211 | D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi | 95.4 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 95.23 | |
| 2p9j_A | 162 | Hypothetical protein AQ2171; secsg, riken, PSI, st | 95.09 | |
| 2i7d_A | 193 | 5'(3')-deoxyribonucleotidase, cytosolic type; hydr | 94.9 | |
| 2i33_A | 258 | Acid phosphatase; HAD superfamily, hydrolase; 1.57 | 94.79 | |
| 3ib6_A | 189 | Uncharacterized protein; structural genomics, unkn | 94.39 | |
| 1q92_A | 197 | 5(3)-deoxyribonucleotidase; alpha-beta rossman fol | 94.33 | |
| 3ocu_A | 262 | Lipoprotein E; hydrolase, outer membrane; HET: NMN | 93.84 | |
| 2ah5_A | 210 | COG0546: predicted phosphatases; MCSG, structural | 93.67 | |
| 2kou_A | 102 | Dicer-like protein 4; ATP-binding, endonuclease, h | 93.21 | |
| 3pct_A | 260 | Class C acid phosphatase; hydrolase, outer membran | 92.77 | |
| 3nvb_A | 387 | Uncharacterized protein; protein FKBH, protein fkb | 92.66 | |
| 2kou_A | 102 | Dicer-like protein 4; ATP-binding, endonuclease, h | 92.63 | |
| 3mmz_A | 176 | Putative HAD family hydrolase; structural genomics | 92.62 | |
| 2hoq_A | 241 | Putative HAD-hydrolase PH1655; haloacid dehalogena | 92.56 | |
| 2fpr_A | 176 | Histidine biosynthesis bifunctional protein HISB; | 92.21 | |
| 3mn1_A | 189 | Probable YRBI family phosphatase; structural genom | 91.9 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 91.87 | |
| 1k1e_A | 180 | Deoxy-D-mannose-octulosonate 8-phosphate phosphat; | 91.75 | |
| 2gfh_A | 260 | Haloacid dehalogenase-like hydrolase domain conta; | 91.11 | |
| 2hcf_A | 234 | Hydrolase, haloacid dehalogenase-like family; NP_6 | 90.69 | |
| 3ij5_A | 211 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; | 90.51 | |
| 1y8a_A | 332 | Hypothetical protein AF1437; structural genomics, | 90.25 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 90.02 | |
| 2b82_A | 211 | APHA, class B acid phosphatase; DDDD acid phosphat | 89.86 | |
| 2pr7_A | 137 | Haloacid dehalogenase/epoxide hydrolase family; NP | 89.42 | |
| 2db2_A | 119 | KIAA0890 protein; DSRM domain, structural genomics | 87.79 | |
| 1qyi_A | 384 | ZR25, hypothetical protein; structural genomics, P | 87.26 | |
| 1te2_A | 226 | Putative phosphatase; structural genomics, phospha | 86.77 | |
| 2db2_A | 119 | KIAA0890 protein; DSRM domain, structural genomics | 86.71 | |
| 3n07_A | 195 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; | 86.66 | |
| 3cnh_A | 200 | Hydrolase family protein; NP_295428.1, predicted h | 86.05 | |
| 2om6_A | 235 | Probable phosphoserine phosphatase; rossmann fold, | 85.65 | |
| 4as2_A | 327 | Phosphorylcholine phosphatase; hydrolase, HAD supe | 85.25 | |
| 3d6j_A | 225 | Putative haloacid dehalogenase-like hydrolase; str | 84.62 | |
| 3l8h_A | 179 | Putative haloacid dehalogenase-like hydrolase; HAD | 83.22 | |
| 4fe3_A | 297 | Cytosolic 5'-nucleotidase 3; substrate complex, HA | 82.97 |
| >1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-31 Score=263.87 Aligned_cols=161 Identities=20% Similarity=0.196 Sum_probs=132.3
Q ss_pred CCCCchHHHHHHHHhcCCCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhccccC
Q 002970 608 STETPSGVLQDIAMKCGTKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRVKS 685 (862)
Q Consensus 608 ~~~n~KS~LQE~~QK~~~~l~Y~~v~~--~~Hdk~Ftv~V~i~G~~~G~G~GkSKKeAEq~AA~~AL~~L~~~~~a~~~~ 685 (862)
.++|||+.||||+|+++..++|+++.+ ++|+++|+++|+|+|+.+|+|.|+|||+|||+||+.||+.|..... +
T Consensus 11 ~~~n~ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~~~----~ 86 (179)
T 1qu6_A 11 SAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKK----A 86 (179)
T ss_dssp SSCSHHHHHHHHHHHHTCCCEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCCS----C
T ss_pred CCCCHHHHHHHHHHhCCCCCeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhcccc----c
Confidence 457899999999999998799998754 6799999999999999999999999999999999999999975321 0
Q ss_pred CCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCcCCccccCCcCCCCchHHHHHHhhhcCCCceeeecC
Q 002970 686 DSGSGHGDGSRFSNANENCFMGEINSFGGQPLAKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQP 765 (862)
Q Consensus 686 ~~~~~~sD~~~~p~~~eN~f~~~~~s~~~~~~~~~d~~ss~~srl~~~~ld~~~~~~N~V~lLnELcqkeGL~~~f~~e~ 765 (862)
.++.. .+. . +.++ ....+|||++|||||++.++.+.|...
T Consensus 87 ------~~p~~------------------~~~--~--~~~e-----------~~~~~n~~~~L~E~~qk~~~~~~Y~~~- 126 (179)
T 1qu6_A 87 ------VSPLL------------------LTT--T--NSSE-----------GLSMGNYIGLINRIAQKKRLTVNYEQC- 126 (179)
T ss_dssp ------CSCSS------------------CCC--S--CSSC-----------CCCCCCCHHHHHHHHHHSCCEEEEEEE-
T ss_pred ------CCCcc------------------CCC--C--Cccc-----------ccCCCCHHHHHHHHHHhcCCcceEEec-
Confidence 00000 000 0 0000 013469999999999999999877643
Q ss_pred CCCCCCCCCccEEEEEEECCEEEeeeecCCHHHHHHHHHHHHHHHhhcc
Q 002970 766 PSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSM 814 (862)
Q Consensus 766 v~~sGp~H~keF~aqV~IdGkvyG~GtGsSKKeAKqqAAe~AL~aL~~~ 814 (862)
.+|++|.+.|+++|+|+|+.|+.|+|+|||+||++||+.||..|...
T Consensus 127 --~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~~L~~~ 173 (179)
T 1qu6_A 127 --ASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSE 173 (179)
T ss_dssp --EECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred --CcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHHHHHhcc
Confidence 58999999999999999999999999999999999999999999753
|
| >3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
| >2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118} | Back alignment and structure |
|---|
| >2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A | Back alignment and structure |
|---|
| >1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A | Back alignment and structure |
|---|
| >3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A | Back alignment and structure |
|---|
| >3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} | Back alignment and structure |
|---|
| >1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A | Back alignment and structure |
|---|
| >1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A | Back alignment and structure |
|---|
| >1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A | Back alignment and structure |
|---|
| >2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A | Back alignment and structure |
|---|
| >2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B | Back alignment and structure |
|---|
| >1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A | Back alignment and structure |
|---|
| >2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A | Back alignment and structure |
|---|
| >1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A | Back alignment and structure |
|---|
| >1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} | Back alignment and structure |
|---|
| >1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A | Back alignment and structure |
|---|
| >2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B | Back alignment and structure |
|---|
| >2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A | Back alignment and structure |
|---|
| >1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B | Back alignment and structure |
|---|
| >2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A | Back alignment and structure |
|---|
| >3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B | Back alignment and structure |
|---|
| >1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 | Back alignment and structure |
|---|
| >3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 | Back alignment and structure |
|---|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A | Back alignment and structure |
|---|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A | Back alignment and structure |
|---|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 | Back alignment and structure |
|---|
| >2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A | Back alignment and structure |
|---|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A | Back alignment and structure |
|---|
| >3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
| >3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A* | Back alignment and structure |
|---|
| >3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0 | Back alignment and structure |
|---|
| >1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A | Back alignment and structure |
|---|
| >3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311} | Back alignment and structure |
|---|
| >4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A | Back alignment and structure |
|---|
| >2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6 | Back alignment and structure |
|---|
| >3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
| >1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A | Back alignment and structure |
|---|
| >3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
| >3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A | Back alignment and structure |
|---|
| >3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
| >4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A | Back alignment and structure |
|---|
| >2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A | Back alignment and structure |
|---|
| >3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A | Back alignment and structure |
|---|
| >3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0 | Back alignment and structure |
|---|
| >1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A | Back alignment and structure |
|---|
| >1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A | Back alignment and structure |
|---|
| >4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A | Back alignment and structure |
|---|
| >2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A | Back alignment and structure |
|---|
| >2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20 | Back alignment and structure |
|---|
| >3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0 | Back alignment and structure |
|---|
| >2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6 | Back alignment and structure |
|---|
| >3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP} | Back alignment and structure |
|---|
| >2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp} | Back alignment and structure |
|---|
| >2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A* | Back alignment and structure |
|---|
| >2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum} | Back alignment and structure |
|---|
| >4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A | Back alignment and structure |
|---|
| >3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis} | Back alignment and structure |
|---|
| >2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6 | Back alignment and structure |
|---|
| >3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp} | Back alignment and structure |
|---|
| >2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2 | Back alignment and structure |
|---|
| >2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii} | Back alignment and structure |
|---|
| >2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A | Back alignment and structure |
|---|
| >3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas} | Back alignment and structure |
|---|
| >3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A* | Back alignment and structure |
|---|
| >3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0 | Back alignment and structure |
|---|
| >2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
| >3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis} | Back alignment and structure |
|---|
| >2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
| >1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A | Back alignment and structure |
|---|
| >3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A | Back alignment and structure |
|---|
| >3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus} | Back alignment and structure |
|---|
| >4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
| >3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
| >3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii} | Back alignment and structure |
|---|
| >3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A* | Back alignment and structure |
|---|
| >2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3 | Back alignment and structure |
|---|
| >3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
| >2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
| >4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile} | Back alignment and structure |
|---|
| >1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A* | Back alignment and structure |
|---|
| >2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22 | Back alignment and structure |
|---|
| >3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae} | Back alignment and structure |
|---|
| >2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A* | Back alignment and structure |
|---|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
| >2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A* | Back alignment and structure |
|---|
| >2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A | Back alignment and structure |
|---|
| >3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A | Back alignment and structure |
|---|
| >3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A | Back alignment and structure |
|---|
| >2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6 | Back alignment and structure |
|---|
| >2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida} | Back alignment and structure |
|---|
| >2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis} | Back alignment and structure |
|---|
| >2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A* | Back alignment and structure |
|---|
| >3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A | Back alignment and structure |
|---|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
| >1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A* | Back alignment and structure |
|---|
| >2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A | Back alignment and structure |
|---|
| >2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6 | Back alignment and structure |
|---|
| >3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis} | Back alignment and structure |
|---|
| >1y8a_A Hypothetical protein AF1437; structural genomics, protein structu initiative, PSI, midwest center for structural genomics; 1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24 | Back alignment and structure |
|---|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A | Back alignment and structure |
|---|
| >2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
| >2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13 | Back alignment and structure |
|---|
| >1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6 | Back alignment and structure |
|---|
| >2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae} | Back alignment and structure |
|---|
| >3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
| >2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A* | Back alignment and structure |
|---|
| >3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
| >3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
| >4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 862 | ||||
| d1qu6a2 | 89 | d.50.1.1 (A:91-179) dsRNA-dependent protein kinase | 5e-05 | |
| d1o0wa2 | 69 | d.50.1.1 (A:168-236) RNase III, C-terminal domain | 7e-05 | |
| d1o0wa2 | 69 | d.50.1.1 (A:168-236) RNase III, C-terminal domain | 1e-04 | |
| d1ta0a_ | 181 | c.108.1.16 (A:) Carboxy-terminal domain RNA polyme | 2e-04 | |
| d1x47a1 | 85 | d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie | 2e-04 | |
| d1x48a1 | 76 | d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p | 7e-04 | |
| d1whna_ | 128 | d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, | 0.002 | |
| d1ekza_ | 76 | d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros | 0.003 |
| >d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 5e-05
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 745 VSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAA 804
+ + + + L V ++Q + + + ++ + G GST EAK AA
Sbjct: 17 IGLINRIAQKKRLTVNYEQCASGVHGP---EGFHYKCKMGQKEYSIGTGSTKQEAKQLAA 73
Query: 805 EKALGSLRS 813
+ A + S
Sbjct: 74 KLAYLQILS 82
|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69 | Back information, alignment and structure |
|---|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69 | Back information, alignment and structure |
|---|
| >d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 181 | Back information, alignment and structure |
|---|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
| >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128 | Back information, alignment and structure |
|---|
| >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 862 | |||
| d1ta0a_ | 181 | Carboxy-terminal domain RNA polymerase II polypept | 99.85 | |
| d1o0wa2 | 69 | RNase III, C-terminal domain {Thermotoga maritima | 99.68 | |
| d1x48a1 | 76 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 99.68 | |
| d1qu6a1 | 90 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 99.67 | |
| d1x49a1 | 85 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 99.67 | |
| d1x48a1 | 76 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 99.66 | |
| d2dixa1 | 73 | Interferon-inducible double stranded RNA-dependent | 99.65 | |
| d1whqa_ | 99 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 99.65 | |
| d1x47a1 | 85 | Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d1qu6a2 | 89 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 99.64 | |
| d1qu6a2 | 89 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 99.62 | |
| d1x49a1 | 85 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 99.61 | |
| d1o0wa2 | 69 | RNase III, C-terminal domain {Thermotoga maritima | 99.6 | |
| d2b7va1 | 71 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 99.59 | |
| d1qu6a1 | 90 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 99.59 | |
| d2nuga2 | 68 | RNase III, C-terminal domain {Aquifex aeolicus [Ta | 99.59 | |
| d2cpna1 | 76 | TAR RNA-binding protein 2 {Human (Homo sapiens) [T | 99.58 | |
| d2dixa1 | 73 | Interferon-inducible double stranded RNA-dependent | 99.57 | |
| d1di2a_ | 69 | Double-stranded RNA-binding protein A, second dsRB | 99.56 | |
| d2cpna1 | 76 | TAR RNA-binding protein 2 {Human (Homo sapiens) [T | 99.55 | |
| d1uila_ | 113 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 99.55 | |
| d1ekza_ | 76 | Staufen, domain III {Fruit fly (Drosophila melanog | 99.54 | |
| d1di2a_ | 69 | Double-stranded RNA-binding protein A, second dsRB | 99.54 | |
| d1ekza_ | 76 | Staufen, domain III {Fruit fly (Drosophila melanog | 99.53 | |
| d1uhza_ | 89 | staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10 | 99.52 | |
| d1x47a1 | 85 | Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d2nuga2 | 68 | RNase III, C-terminal domain {Aquifex aeolicus [Ta | 99.49 | |
| d1uhza_ | 89 | staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10 | 99.47 | |
| d1whna_ | 128 | tRNA-dihydrouridine synthase 2-like, Dus2l (231001 | 99.47 | |
| d2b7va1 | 71 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 99.46 | |
| d2b7ta1 | 73 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 99.4 | |
| d1whqa_ | 99 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 99.39 | |
| d1t4oa_ | 81 | RNase III, C-terminal domain {Baker's yeast (Sacch | 99.38 | |
| d2dmya1 | 84 | Spermatid perinuclear RNA-binding protein {Human ( | 99.37 | |
| d1uila_ | 113 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 99.37 | |
| d2b7ta1 | 73 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 99.29 | |
| d1whna_ | 128 | tRNA-dihydrouridine synthase 2-like, Dus2l (231001 | 99.27 | |
| d2dmya1 | 84 | Spermatid perinuclear RNA-binding protein {Human ( | 99.24 | |
| d1t4oa_ | 81 | RNase III, C-terminal domain {Baker's yeast (Sacch | 99.09 | |
| d2go7a1 | 204 | Hypothetical protein SP2064 {Streptococcus pneumon | 98.11 | |
| d1u7pa_ | 164 | Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu | 97.86 | |
| d1te2a_ | 218 | Phosphatase YniC {Escherichia coli [TaxId: 562]} | 97.79 | |
| d2hsza1 | 224 | Phosphoglycolate phosphatase Gph {Haemophilus somn | 97.7 | |
| d2ah5a1 | 210 | predicted phosphatase SP0104 {Streptococcus pneumo | 97.68 | |
| d2hdoa1 | 207 | Phosphoglycolate phosphatase {Lactobacillus planta | 97.65 | |
| d1x42a1 | 230 | Hypothetical protein PH0459 {Archaeon Pyrococcus h | 97.63 | |
| d2hcfa1 | 228 | Hypothetical protein CT1708 {Chlorobium tepidum [T | 97.33 | |
| d2feaa1 | 226 | 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate | 97.29 | |
| d2fi1a1 | 187 | Putative hydrolase SP0805 {Streptococcus pneumonia | 97.11 | |
| d1swva_ | 257 | Phosphonoacetaldehyde hydrolase {Bacillus cereus [ | 97.03 | |
| d1zs9a1 | 253 | E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]} | 96.93 | |
| d1nnla_ | 217 | Phosphoserine phosphatase {Human (Homo sapiens) [T | 96.87 | |
| d1o08a_ | 221 | beta-Phosphoglucomutase {Lactococcus lactis [TaxId | 96.74 | |
| d2gfha1 | 247 | N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m | 96.58 | |
| d2fdra1 | 222 | Hypothetical protein Atu0790 {Agrobacterium tumefa | 96.44 | |
| d1zrna_ | 220 | L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s | 96.36 | |
| d1zd3a1 | 225 | Epoxide hydrolase, N-terminal domain {Human (Homo | 95.79 | |
| d1ltqa1 | 149 | Polynucleotide kinase, phosphatase domain {Bacteri | 95.73 | |
| d1cr6a1 | 222 | Epoxide hydrolase, N-terminal domain {Mouse (Mus m | 95.7 | |
| d2b0ca1 | 197 | Putative phosphatase YihX {Escherichia coli [TaxId | 95.58 | |
| d1qq5a_ | 245 | L-2-Haloacid dehalogenase, HAD {Xanthobacter autot | 94.95 | |
| d1j97a_ | 210 | Phosphoserine phosphatase {Archaeon Methanococcus | 90.71 | |
| d2bdua1 | 291 | Cytosolic 5'-nucleotidase III {Mouse (Mus musculus | 87.42 | |
| d2fuea1 | 244 | Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: | 85.0 | |
| d2amya1 | 243 | Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: | 81.78 |
| >d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: NLI interacting factor-like phosphatase domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=4.9e-22 Score=194.27 Aligned_cols=122 Identities=18% Similarity=0.121 Sum_probs=91.8
Q ss_pred CceEEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCCCccchhhhccC
Q 002970 160 DTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQD 239 (862)
Q Consensus 160 ~~~~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres~~~KsL~~lfp~ 239 (862)
...|||++|||+++ ||+ .++++|||+|||+|++.||..|++.|||++.++.. -..++..+.+.+..|+|..+..
T Consensus 49 ~~~~~v~~RP~l~e---FL~-~l~~~yei~I~Ta~~~~YA~~il~~ldp~~~~~~~-~~r~~c~~~~~~~~KdL~~l~~- 122 (181)
T d1ta0a_ 49 VHQVYVLKRPHVDE---FLQ-RMGELFECVLFTASLAKYADPVADLLDKWGAFRAR-LFRESCVFHRGNYVKDLSRLGR- 122 (181)
T ss_dssp EEEEEEEECTTHHH---HHH-HHHHHSEEEEECSSCHHHHHHHHHHHCSSCCEEEE-ECGGGSEEETTEEECCGGGSCS-
T ss_pred eeeeEEecCCCHHH---HHH-HHHhceEEEEEcCCcHHHHHHHHHHhccCCceeEE-EEeeeeeecCCcccccHhhcCC-
Confidence 34689999999999 999 89999999999999999999999999998876551 0111111112236699998864
Q ss_pred CCCCCcEEEEEcCCcccCCCCCCCCeEEecccccccCchhhhccccchHHHHHHHHhhhc
Q 002970 240 GTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVR 299 (862)
Q Consensus 240 ~~~~~~~vVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh 299 (862)
+.+.+|||||+.++|..+. .|.+.|++|. . ...+-.|..++.+|..++
T Consensus 123 ---~l~~vvivDd~~~~~~~~~-~N~I~I~~f~--~------~~~D~eL~~l~~~L~~l~ 170 (181)
T d1ta0a_ 123 ---DLRRVLILDNSPASYVFHP-DNAVPVASWF--D------NMSDTELHDLLPFFEQLS 170 (181)
T ss_dssp ---CGGGEEEECSCGGGGTTCG-GGBCCCCCCS--S------CTTCCHHHHHHHHHHHHT
T ss_pred ---CHHHeEEEcCChhhhhcCc-cCeeEecCcC--C------CCCcHHHHHHHHHHHHHc
Confidence 6789999999999998874 4566788773 1 122346777888887764
|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
| >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
| >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
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| >d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]} | Back information, alignment and structure |
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| >d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
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| >d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
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| >d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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| >d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
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| >d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
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| >d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
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| >d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
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| >d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
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| >d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]} | Back information, alignment and structure |
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| >d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
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| >d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
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| >d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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| >d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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