Citrus Sinensis ID: 002971

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860--
MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPAAPVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETLLKA
ccccccccHHHHHHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHHHccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccEEEEcHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccEEEEcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEEEEcccccccccEEEEcccccccccccccccccccccccEEEEEEEEEccccccccccccEEEEEEcccccEEEEEEccEEEEEEcccccccHHHHHHHHccccccccEEEcccccccccHHHHHHHHHcccEEEEEccccccccEEEEEEEEccccEEEEEEEEEcccccEEEEEEcccccHHHHHHHHHHHHHcc
ccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEEcHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHcEEEEEEcccccEEEHHHHHHHHHHHcHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcEcccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccEEEEEEEEEcccEEEEEEEEEccccccccccEEEEcccccccccccccccccccccccEEEEEEccccccccccccccccEEEEEcccccEEEEEEEccHHHHEcccccccHHHHHHHHHHccHHHcEEEEccccccccHHHHHHHHHHccEEEEEEEcccccEEEEEEEEcccccEEEEEEEEEcccccEEEEEEcccHHHHHHHHHHHHHHHcc
mtvgkdvsSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTfvkdsqdpnpLIRALAVRTMGCIRVDKITEYLcdplqrclkdddpyvRKTAAICVAKLYDINAELVEDRGFLESLKdlisdnnpmVVANAVAALAEIeenssrpifeiTSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERvtprlqhaNCAVVLSAVKMILQQMELITSTDVVRNLCkkmapplvtllsaepeIQYVALRNINLIVQRRPTILAHEIKVFFckyndpiyvkMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESldtldepeaKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLkkptegpqQMIQVVLNNatvetdnpdlrdRAYIYWRLLstdpeaakdvvlaekpvisddsnqldpSLLDELLANIATLssvyhkppeaFVTRVKTtasrtddedypngseqgysdapthvadegaspqtsssnapyaatrqpapppaapvsppvpdllgdligldnsaaivpadqaaaspvpalpvvlpastgqglqigaeltrqdGQVFYSMLFenntqtpldgfmIQFNKNTFglaaggalqvpqlqpgtsgrtllPMVLfqnmsagppssLLQVAVKNnqqpvwyfndkisLHVLFTEDGRMERGSFLEtwrslpdsnevlkdlpgvvvsNVEATLDLLAASNMFFIAKRKnanqdvfyfsakippgvpfLIELTTvignpgvkcaiktpnpdiASLFFEAIETLLKA
mtvgkdvsslfTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTfvkdsqdpnPLIRALAVRTMGCIRVDKITEYLCDPlqrclkdddpyVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIvervtprlqhANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEyatevdvdfVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLnnatvetdnpdlRDRAYIYWRLLSTDPEAAKDVVLAEkpvisddsnqLDPSLLDELLANIATLssvyhkppeafVTRVKTtasrtddedypngSEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPAAPVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETLLKA
MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDnnpmvvanavaalaeieenSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADellesflesfpeepAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNapyaatrqpapppaapvsppvpDLLGDLIGLDNSAAIVPADQaaaspvpalpvvlpasTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETLLKA
********SLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPV**********SLLDELLANIATLSSVYHKPPEAFV*******************************************************************LGDLIGLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNM******SLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETL***
*TVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLA*****************DELLANIATLSSVYH*****************************************************************************************************PVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAA*************SGRTLLPMVLFQ**SAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLP*******************TLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETLLKA
MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHV****************************PVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETLLKA
****KDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTR******************************************************************GDL*GLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETLLKA
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPAAPVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETLLKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query862 2.2.26 [Sep-21-2011]
O81742893 Beta-adaptin-like protein yes no 0.987 0.952 0.858 0.0
Q9SUS3894 Beta-adaptin-like protein no no 0.988 0.953 0.867 0.0
O35643943 AP-1 complex subunit beta yes no 0.988 0.903 0.575 0.0
Q10567949 AP-1 complex subunit beta yes no 0.983 0.893 0.567 0.0
P63009937 AP-2 complex subunit beta no no 0.981 0.902 0.557 0.0
P62944937 AP-2 complex subunit beta yes no 0.981 0.902 0.557 0.0
P63010937 AP-2 complex subunit beta no no 0.981 0.902 0.557 0.0
Q9DBG3937 AP-2 complex subunit beta no no 0.981 0.902 0.557 0.0
Q08DS7951 AP-1 complex subunit beta no no 0.988 0.895 0.548 0.0
Q54X82942 AP-1 complex subunit beta yes no 0.636 0.582 0.734 0.0
>sp|O81742|APBLC_ARATH Beta-adaptin-like protein C OS=Arabidopsis thaliana GN=BETAC-AD PE=1 SV=2 Back     alignment and function desciption
 Score = 1492 bits (3862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 740/862 (85%), Positives = 786/862 (91%), Gaps = 11/862 (1%)

Query: 1   MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
           MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP
Sbjct: 43  MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 102

Query: 61  LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
           LIRALAVRTMGCIRVDKITEYLCDPLQ+CLKDDDPYVRKTAAICVAKL+DINAELVEDRG
Sbjct: 103 LIRALAVRTMGCIRVDKITEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRG 162

Query: 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVF 180
           FLE+LKDLISDNNPMVVANAVAALAEI+ENS+ PIFEI S  L+KLLTALNECTEWGQVF
Sbjct: 163 FLEALKDLISDNNPMVVANAVAALAEIQENSTSPIFEINSTILTKLLTALNECTEWGQVF 222

Query: 181 ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK 240
           ILDALSRYKA+D REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDV+RNLCK
Sbjct: 223 ILDALSRYKASDPREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVIRNLCK 282

Query: 241 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 300
           KMAPPLVTLLSAEPEIQYVALRNINLIVQ+RPTILAHEIKVFFCKYNDPIYVKMEKLEIM
Sbjct: 283 KMAPPLVTLLSAEPEIQYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 342

Query: 301 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 360
           IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK
Sbjct: 343 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 402

Query: 361 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 420
           VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA
Sbjct: 403 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 462

Query: 421 DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD 480
           DELLESFLE+FPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD
Sbjct: 463 DELLESFLENFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD 522

Query: 481 RAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAF 540
           RAYIYWRLLSTDPEAAKDVVLAEKPVI+DDSNQLDPSLLDELLANI+TLSSVYHKPPEAF
Sbjct: 523 RAYIYWRLLSTDPEAAKDVVLAEKPVITDDSNQLDPSLLDELLANISTLSSVYHKPPEAF 582

Query: 541 VTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPAAP 600
           VTR+KTT  +T+DEDY  GSE GY +A  +  D  ASP   S+   Y      AP     
Sbjct: 583 VTRLKTTVQKTEDEDYVEGSETGYPEASGNPVDGAASP---SATTGYVTKLAAAP----- 634

Query: 601 VSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQV 660
              PVPDLLGDL+G DN AAIVP D+        LPVVLPAS GQGLQI A+LTRQDGQV
Sbjct: 635 --APVPDLLGDLMGSDN-AAIVPVDEPTTPSGRPLPVVLPASKGQGLQISAQLTRQDGQV 691

Query: 661 FYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAG 720
           FYSML ENN+Q+ LDGFMIQFNKN+FGLAA G+LQVP LQPG S RT++PMVL QNMS G
Sbjct: 692 FYSMLLENNSQSLLDGFMIQFNKNSFGLAAVGSLQVPPLQPGASARTMMPMVLSQNMSTG 751

Query: 721 PPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPG 780
             SS+LQVAVKNNQQPVWYF DKI L+ LF+EDGRMERG+FLETW+SLPDSNEV K+ PG
Sbjct: 752 STSSVLQVAVKNNQQPVWYFEDKIVLNALFSEDGRMERGTFLETWKSLPDSNEVQKEFPG 811

Query: 781 VVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCA 840
           + +++VE+TLDLLAASNMFFIAKRKN NQDV Y SAK+P G+PFLIELT ++G PG+KCA
Sbjct: 812 ITITSVESTLDLLAASNMFFIAKRKNGNQDVLYLSAKVPRGIPFLIELTAIVGQPGLKCA 871

Query: 841 IKTPNPDIASLFFEAIETLLKA 862
           +KTP P+IA LFFEA+E L KA
Sbjct: 872 VKTPTPEIAPLFFEAVEILFKA 893
Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SUS3|APBLB_ARATH Beta-adaptin-like protein B OS=Arabidopsis thaliana GN=BETAB-AD PE=1 SV=1 Back     alignment and function description
>sp|O35643|AP1B1_MOUSE AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1b1 PE=1 SV=2 Back     alignment and function description
>sp|Q10567|AP1B1_HUMAN AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1B1 PE=1 SV=2 Back     alignment and function description
>sp|P63009|AP2B1_BOVIN AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 PE=1 SV=2 Back     alignment and function description
>sp|P62944|AP2B1_RAT AP-2 complex subunit beta OS=Rattus norvegicus GN=Ap2b1 PE=1 SV=1 Back     alignment and function description
>sp|P63010|AP2B1_HUMAN AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1 PE=1 SV=1 Back     alignment and function description
>sp|Q9DBG3|AP2B1_MOUSE AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1 PE=1 SV=1 Back     alignment and function description
>sp|Q08DS7|AP1B1_BOVIN AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1 PE=2 SV=1 Back     alignment and function description
>sp|Q54X82|AP1B_DICDI AP-1 complex subunit beta OS=Dictyostelium discoideum GN=ap1b1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query862
224074998904 predicted protein [Populus trichocarpa] 0.998 0.952 0.900 0.0
224053869904 predicted protein [Populus trichocarpa] 0.998 0.952 0.892 0.0
356497341891 PREDICTED: beta-adaptin-like protein C-l 0.982 0.950 0.888 0.0
356543839898 PREDICTED: beta-adaptin-like protein C-l 0.993 0.953 0.881 0.0
297742217920 unnamed protein product [Vitis vinifera] 0.996 0.933 0.879 0.0
356543841915 PREDICTED: beta-adaptin-like protein C-l 0.993 0.935 0.881 0.0
225426194903 PREDICTED: beta-adaptin-like protein C [ 0.997 0.952 0.878 0.0
255564498903 AP-2 complex subunit beta-1, putative [R 0.994 0.949 0.894 0.0
356539170898 PREDICTED: beta-adaptin-like protein C-l 0.990 0.951 0.887 0.0
357474047896 AP-2 complex subunit beta [Medicago trun 0.990 0.953 0.875 0.0
>gi|224074998|ref|XP_002304511.1| predicted protein [Populus trichocarpa] gi|222841943|gb|EEE79490.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1578 bits (4087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 777/863 (90%), Positives = 815/863 (94%), Gaps = 2/863 (0%)

Query: 1   MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
           MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP
Sbjct: 43  MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 102

Query: 61  LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
           LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG
Sbjct: 103 LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 162

Query: 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVF 180
           FLESLKDLISDNNPMVVANAVAALAEI++NS RPIFEITSHTLSKLLTALNECTEWGQVF
Sbjct: 163 FLESLKDLISDNNPMVVANAVAALAEIQDNSVRPIFEITSHTLSKLLTALNECTEWGQVF 222

Query: 181 ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK 240
           ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQME+ITSTDVVRNLCK
Sbjct: 223 ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMEIITSTDVVRNLCK 282

Query: 241 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 300
           KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM
Sbjct: 283 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 342

Query: 301 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 360
           IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK
Sbjct: 343 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 402

Query: 361 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 420
           VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA
Sbjct: 403 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 462

Query: 421 DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD 480
           DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNAT+ETDNPDLRD
Sbjct: 463 DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATMETDNPDLRD 522

Query: 481 RAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAF 540
           RAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAF
Sbjct: 523 RAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAF 582

Query: 541 VTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPA-A 599
           VTRVKT A +T+D++Y  GSE GYS++  H AD  ASP TS+SN PYA  RQ AP P+ +
Sbjct: 583 VTRVKTAAQKTEDDEYAEGSEAGYSESSAHTADGAASPPTSASNVPYAGARQAAPAPSTS 642

Query: 600 PVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQ 659
           P + P+PDL+GDL+ +DNS A+VP DQ +    P LPV+LPA+TGQGLQI A+L  +DGQ
Sbjct: 643 PPAAPLPDLMGDLLDMDNS-AMVPVDQPSTPASPPLPVLLPAATGQGLQISAQLISRDGQ 701

Query: 660 VFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSA 719
           +FYS+LFENN+Q PLDGFMIQFNKN+FGLAA G LQVPQLQPGTS  TLLP+ LFQNMSA
Sbjct: 702 IFYSLLFENNSQIPLDGFMIQFNKNSFGLAAAGPLQVPQLQPGTSAATLLPVALFQNMSA 761

Query: 720 GPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLP 779
           GPPSSLLQVAVKNNQQPVWYFNDKISLHV FTEDGRMERGSFLETWRSLPDSNEV KD P
Sbjct: 762 GPPSSLLQVAVKNNQQPVWYFNDKISLHVFFTEDGRMERGSFLETWRSLPDSNEVSKDFP 821

Query: 780 GVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKC 839
           G+ V+ VEATLD LAASNMFFIAKRK+ANQDVFYFSAK+P G+PFL ELTTV+G PG+KC
Sbjct: 822 GITVNGVEATLDRLAASNMFFIAKRKHANQDVFYFSAKMPRGIPFLTELTTVVGIPGIKC 881

Query: 840 AIKTPNPDIASLFFEAIETLLKA 862
           AIKTPNP++ASLFFEAIETLLK 
Sbjct: 882 AIKTPNPEMASLFFEAIETLLKG 904

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224053869|ref|XP_002298020.1| predicted protein [Populus trichocarpa] gi|222845278|gb|EEE82825.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356497341|ref|XP_003517519.1| PREDICTED: beta-adaptin-like protein C-like [Glycine max] Back     alignment and taxonomy information
>gi|356543839|ref|XP_003540367.1| PREDICTED: beta-adaptin-like protein C-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|297742217|emb|CBI34366.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356543841|ref|XP_003540368.1| PREDICTED: beta-adaptin-like protein C-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|225426194|ref|XP_002279641.1| PREDICTED: beta-adaptin-like protein C [Vitis vinifera] Back     alignment and taxonomy information
>gi|255564498|ref|XP_002523245.1| AP-2 complex subunit beta-1, putative [Ricinus communis] gi|223537541|gb|EEF39166.1| AP-2 complex subunit beta-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356539170|ref|XP_003538073.1| PREDICTED: beta-adaptin-like protein C-like [Glycine max] Back     alignment and taxonomy information
>gi|357474047|ref|XP_003607308.1| AP-2 complex subunit beta [Medicago truncatula] gi|355508363|gb|AES89505.1| AP-2 complex subunit beta [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query862
TAIR|locus:2117924893 AT4G23460 [Arabidopsis thalian 0.987 0.952 0.805 0.0
UNIPROTKB|E2RRJ6939 AP1B1 "Uncharacterized protein 0.668 0.613 0.676 1.2e-243
UNIPROTKB|F1RFI2947 AP1B1 "Uncharacterized protein 0.626 0.570 0.710 1.6e-243
UNIPROTKB|F1MIF2946 AP1B1 "Uncharacterized protein 0.626 0.570 0.709 4.2e-243
MGI|MGI:1096368943 Ap1b1 "adaptor protein complex 0.626 0.572 0.710 6.8e-243
UNIPROTKB|I3LV02949 AP1B1 "Uncharacterized protein 0.626 0.569 0.710 1.4e-242
UNIPROTKB|Q10567949 AP1B1 "AP-1 complex subunit be 0.626 0.569 0.710 1.8e-242
ZFIN|ZDB-GENE-061025-1947 ap1b1 "adaptor-related protein 0.661 0.601 0.676 2.9e-242
RGD|2064949 Ap1b1 "adaptor-related protein 0.626 0.569 0.707 2.6e-241
UNIPROTKB|P52303949 Ap1b1 "AP-1 complex subunit be 0.626 0.569 0.707 2.6e-241
TAIR|locus:2117924 AT4G23460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3476 (1228.7 bits), Expect = 0., P = 0.
 Identities = 694/862 (80%), Positives = 739/862 (85%)

Query:     1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
             MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP
Sbjct:    43 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 102

Query:    61 LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
             LIRALAVRTMGCIRVDKITEYLCDPLQ+CLKDDDPYVRKTAAICVAKL+DINAELVEDRG
Sbjct:   103 LIRALAVRTMGCIRVDKITEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRG 162

Query:   121 FLESLKDLISDXXXXXXXXXXXXXXXXXXXSSRPIFEITSHTLSKLLTALNECTEWGQVF 180
             FLE+LKDLISD                   S+ PIFEI S  L+KLLTALNECTEWGQVF
Sbjct:   163 FLEALKDLISDNNPMVVANAVAALAEIQENSTSPIFEINSTILTKLLTALNECTEWGQVF 222

Query:   181 ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK 240
             ILDALSRYKA+D REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDV+RNLCK
Sbjct:   223 ILDALSRYKASDPREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVIRNLCK 282

Query:   241 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 300
             KMAPPLVTLLSAEPEIQYVALRNINLIVQ+RPTILAHEIKVFFCKYNDPIYVKMEKLEIM
Sbjct:   283 KMAPPLVTLLSAEPEIQYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 342

Query:   301 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 360
             IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK
Sbjct:   343 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 402

Query:   361 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 420
             VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA
Sbjct:   403 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 462

Query:   421 DXXXXXXXXXXXXXXAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD 480
             D              AQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD
Sbjct:   463 DELLESFLENFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD 522

Query:   481 RAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAF 540
             RAYIYWRLLSTDPEAAKDVVLAEKPVI+DDSNQLDPSLLDELLANI+TLSSVYHKPPEAF
Sbjct:   523 RAYIYWRLLSTDPEAAKDVVLAEKPVITDDSNQLDPSLLDELLANISTLSSVYHKPPEAF 582

Query:   541 VTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNXXXXXXXXXXXXXXXX 600
             VTR+KTT  +T+DEDY  GSE GY +A  +  D  ASP  ++                  
Sbjct:   583 VTRLKTTVQKTEDEDYVEGSETGYPEASGNPVDGAASPSATTG----------YVTKLAA 632

Query:   601 XXXXXXDLLGDLIGLDNSAAIVPADQXXXXXXXXXXXXXXXXTGQGLQIGAELTRQDGQV 660
                   DLLGDL+G DN AAIVP D+                 GQGLQI A+LTRQDGQV
Sbjct:   633 APAPVPDLLGDLMGSDN-AAIVPVDEPTTPSGRPLPVVLPASKGQGLQISAQLTRQDGQV 691

Query:   661 FYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAG 720
             FYSML ENN+Q+ LDGFMIQFNKN+FGLAA G+LQVP LQPG S RT++PMVL QNMS G
Sbjct:   692 FYSMLLENNSQSLLDGFMIQFNKNSFGLAAVGSLQVPPLQPGASARTMMPMVLSQNMSTG 751

Query:   721 PPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPG 780
               SS+LQVAVKNNQQPVWYF DKI L+ LF+EDGRMERG+FLETW+SLPDSNEV K+ PG
Sbjct:   752 STSSVLQVAVKNNQQPVWYFEDKIVLNALFSEDGRMERGTFLETWKSLPDSNEVQKEFPG 811

Query:   781 VVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCA 840
             + +++VE+TLDLLAASNMFFIAKRKN NQDV Y SAK+P G+PFLIELT ++G PG+KCA
Sbjct:   812 ITITSVESTLDLLAASNMFFIAKRKNGNQDVLYLSAKVPRGIPFLIELTAIVGQPGLKCA 871

Query:   841 IKTPNPDIASLFFEAIETLLKA 862
             +KTP P+IA LFFEA+E L KA
Sbjct:   872 VKTPTPEIAPLFFEAVEILFKA 893
GO:0005634 "nucleus" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA
GO:0015031 "protein transport" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030117 "membrane coat" evidence=IEA
GO:0030131 "clathrin adaptor complex" evidence=IEA
GO:0030276 "clathrin binding" evidence=ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
UNIPROTKB|E2RRJ6 AP1B1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RFI2 AP1B1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MIF2 AP1B1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1096368 Ap1b1 "adaptor protein complex AP-1, beta 1 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LV02 AP1B1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q10567 AP1B1 "AP-1 complex subunit beta-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061025-1 ap1b1 "adaptor-related protein complex 1, beta 1 subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|2064 Ap1b1 "adaptor-related protein complex 1, beta 1 subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P52303 Ap1b1 "AP-1 complex subunit beta-1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O81742APBLC_ARATHNo assigned EC number0.85840.98720.9529yesno
O35643AP1B1_MOUSENo assigned EC number0.57510.98830.9034yesno
P62944AP2B1_RATNo assigned EC number0.55760.98140.9028yesno
Q54X82AP1B_DICDINo assigned EC number0.73450.63680.5828yesno
Q10567AP1B1_HUMANNo assigned EC number0.56780.98370.8935yesno
Q9SUS3APBLB_ARATHNo assigned EC number0.86770.98830.9530nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query862
pfam01602522 pfam01602, Adaptin_N, Adaptin N terminal region 0.0
PTZ00429746 PTZ00429, PTZ00429, beta-adaptin; Provisional 1e-148
COG5096757 COG5096, COG5096, Vesicle coat complex, various su 1e-146
pfam12717171 pfam12717, Cnd1, non-SMC mitotic condensation comp 9e-43
pfam09066113 pfam09066, B2-adapt-app_C, Beta2-adaptin appendage 7e-33
smart01020111 smart01020, B2-adapt-app_C, Beta2-adaptin appendag 3e-32
smart00809104 smart00809, Alpha_adaptinC2, Adaptin C-terminal do 3e-13
pfam02883115 pfam02883, Alpha_adaptinC2, Adaptin C-terminal dom 5e-12
COG5240898 COG5240, SEC21, Vesicle coat complex COPI, gamma s 1e-10
pfam1364688 pfam13646, HEAT_2, HEAT repeats 1e-08
pfam1364688 pfam13646, HEAT_2, HEAT repeats 1e-04
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 3e-04
COG1413335 COG1413, COG1413, FOG: HEAT repeat [Energy product 3e-04
COG1413335 COG1413, COG1413, FOG: HEAT repeat [Energy product 9e-04
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 0.004
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region Back     alignment and domain information 
 Score =  553 bits (1427), Expect = 0.0
 Identities = 205/498 (41%), Positives = 301/498 (60%), Gaps = 13/498 (2%)

Query: 1   MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
           + +G+D+S LF +VV  + + +  LK+L YLYL   A+  PDLAIL  N+  KD Q PNP
Sbjct: 33  IMLGEDISFLFFEVVKLVASNDFTLKRLGYLYLKLLAEESPDLAILVTNSIKKDLQSPNP 92

Query: 61  LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
           LIR LA+RT+ CIRV ++   L   +++ L D DPYVRK AA+ + KLY  + +LV D  
Sbjct: 93  LIRGLALRTLSCIRVPELARDLAPDIKKLLVDRDPYVRKKAALAILKLYRKDPDLVRD-F 151

Query: 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVF 180
            +  LK+L+SD +P VV+ AVA L EI +N    + ++    + +L   L  C  W QV 
Sbjct: 152 LVPELKELLSDKDPGVVSAAVALLYEIRKNDRLYLNKLLPLLVRRLCNLLTVCNPWLQVK 211

Query: 181 ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK 240
           IL  L+RY   D RE + ++E +   LQ++N AV+  AVK I   + L         L  
Sbjct: 212 ILRLLTRYAPQDPREPKELLEDILNLLQNSNNAVLYEAVKTI---IHLDPEP----ELIV 264

Query: 241 KMAPPLVTLLSAEPE-IQYVALRNINLIVQRRP-TILAHEIKVFFCKYNDPIYVKMEKLE 298
                L  LLS+  E ++YVALRN+N I+++ P  +   ++ +F  K +D I +++  L+
Sbjct: 265 LAVNALGRLLSSPDENLRYVALRNLNKILEKHPPAVQHLDLIIFCLKTDDDISIRLRALD 324

Query: 299 IMIKLASDRNIDQVLLEFKEYATEV-DVDFVRKAVRAIGRCAIKLERAAERCISVLLELI 357
           ++ KL  + N+ +++ E  +Y +E+ D +F  K V+AIGR A K    AE CI VLLEL+
Sbjct: 325 LLYKLVDESNVKEIVKELLKYVSEIADPEFKIKLVKAIGRLAEKFPTDAEWCIDVLLELL 384

Query: 358 KIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERI 417
            +  +YVV E + VI+DI R+YP   E I+  LCE L+ ++ PEA+A+ +WI+GEY E I
Sbjct: 385 SLAGSYVVDEIVEVIRDIIRKYPELREYILEHLCELLEDIESPEARAAALWILGEYGELI 444

Query: 418 -DNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQ-MIQVVLNNATVETDN 475
            ++  +LL S LE F  E  +V+L LLTA VKL L  P E  Q  ++QVVL+ AT ++ +
Sbjct: 445 PNSPSDLLRSILEVFVLESLKVRLALLTALVKLSLTFPDEEVQNLIVQVVLSLATQDSSD 504

Query: 476 PDLRDRAYIYWRLLSTDP 493
            +LRDRA  Y RLLS   
Sbjct: 505 LELRDRAVEYLRLLSLAD 522

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional Back     alignment and domain information
>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|221731 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>gnl|CDD|220099 pfam09066, B2-adapt-app_C, Beta2-adaptin appendage, C-terminal sub-domain Back     alignment and domain information
>gnl|CDD|198088 smart01020, B2-adapt-app_C, Beta2-adaptin appendage, C-terminal sub-domain Back     alignment and domain information
>gnl|CDD|197886 smart00809, Alpha_adaptinC2, Adaptin C-terminal domain Back     alignment and domain information
>gnl|CDD|217268 pfam02883, Alpha_adaptinC2, Adaptin C-terminal domain Back     alignment and domain information
>gnl|CDD|227565 COG5240, SEC21, Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 862
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 100.0
PTZ00429746 beta-adaptin; Provisional 100.0
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 100.0
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 100.0
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 100.0
COG5096757 Vesicle coat complex, various subunits [Intracellu 100.0
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 100.0
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 100.0
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 100.0
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 100.0
PF02296113 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal dom 99.7
PF09066114 B2-adapt-app_C: Beta2-adaptin appendage, C-termina 99.47
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.43
PTZ00429746 beta-adaptin; Provisional 99.18
PF14796145 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit 99.17
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.04
PRK09687280 putative lyase; Provisional 99.04
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.03
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.02
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.96
PRK09687280 putative lyase; Provisional 98.94
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 98.93
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.86
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.85
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 98.82
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.74
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.72
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 98.59
smart00809104 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptin 98.58
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.57
KOG0212675 consensus Uncharacterized conserved protein [Funct 98.55
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 98.52
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.46
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.45
PF02883115 Alpha_adaptinC2: Adaptin C-terminal domain; InterP 98.38
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 98.35
PF14764459 SPG48: AP-5 complex subunit, vesicle trafficking 98.3
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.25
KOG10201692 consensus Sister chromatid cohesion protein SCC2/N 98.14
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 98.08
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.0
KOG2259823 consensus Uncharacterized conserved protein [Funct 97.97
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.92
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.92
KOG4224550 consensus Armadillo repeat protein VAC8 required f 97.91
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.9
PF14807104 AP4E_app_platf: Adaptin AP4 complex epsilon append 97.83
PF05804708 KAP: Kinesin-associated protein (KAP) 97.77
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.65
KOG18241233 consensus TATA-binding protein-interacting protein 97.64
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.64
KOG1242569 consensus Protein containing adaptin N-terminal re 97.62
KOG09151702 consensus Uncharacterized conserved protein [Funct 97.6
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 97.56
KOG18241233 consensus TATA-binding protein-interacting protein 97.54
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 97.5
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.48
PF05804708 KAP: Kinesin-associated protein (KAP) 97.45
TIGR02270410 conserved hypothetical protein. Members are found 97.43
KOG04141251 consensus Chromosome condensation complex Condensi 97.43
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 97.38
KOG10201692 consensus Sister chromatid cohesion protein SCC2/N 97.38
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.33
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.33
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 97.32
KOG1242569 consensus Protein containing adaptin N-terminal re 97.26
KOG0212675 consensus Uncharacterized conserved protein [Funct 97.25
TIGR02270410 conserved hypothetical protein. Members are found 97.25
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.24
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.24
KOG2259823 consensus Uncharacterized conserved protein [Funct 97.2
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 97.19
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 97.16
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 97.14
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.13
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 97.11
COG5096757 Vesicle coat complex, various subunits [Intracellu 97.03
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.02
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 96.99
COG1413335 FOG: HEAT repeat [Energy production and conversion 96.94
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 96.93
KOG4224550 consensus Armadillo repeat protein VAC8 required f 96.92
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.84
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 96.81
KOG12401431 consensus Protein kinase containing WD40 repeats [ 96.63
COG50981128 Chromosome condensation complex Condensin, subunit 96.53
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.4
KOG01681051 consensus Putative ubiquitin fusion degradation pr 96.34
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 96.3
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 96.28
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 96.23
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.17
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 96.16
PF14500262 MMS19_N: Dos2-interacting transcription regulator 96.15
KOG04141251 consensus Chromosome condensation complex Condensi 96.15
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 96.13
COG50981128 Chromosome condensation complex Condensin, subunit 96.11
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 96.11
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 95.81
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 95.74
KOG22741005 consensus Predicted importin 9 [Intracellular traf 95.68
KOG09151702 consensus Uncharacterized conserved protein [Funct 95.67
KOG1820815 consensus Microtubule-associated protein [Cytoskel 95.58
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 95.48
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 95.45
PF08752151 COP-gamma_platf: Coatomer gamma subunit appendage 95.44
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 95.41
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 95.4
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 94.52
KOG0413 1529 consensus Uncharacterized conserved protein relate 94.47
KOG12481176 consensus Uncharacterized conserved protein [Funct 94.46
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 94.35
KOG15171387 consensus Guanine nucleotide binding protein MIP1 93.98
KOG12481176 consensus Uncharacterized conserved protein [Funct 93.97
smart00638574 LPD_N Lipoprotein N-terminal Domain. 93.89
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 93.86
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 93.72
PF1036392 DUF2435: Protein of unknown function (DUF2435) 93.62
KOG19491005 consensus Uncharacterized conserved protein [Funct 93.6
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 92.94
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 92.82
PF1036392 DUF2435: Protein of unknown function (DUF2435) 92.42
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 92.1
KOG2025892 consensus Chromosome condensation complex Condensi 91.62
PF05536543 Neurochondrin: Neurochondrin 91.26
PF08167165 RIX1: rRNA processing/ribosome biogenesis 91.2
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 91.16
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 91.1
KOG4413524 consensus 26S proteasome regulatory complex, subun 90.97
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 90.61
KOG2956516 consensus CLIP-associating protein [General functi 90.53
PF05004309 IFRD: Interferon-related developmental regulator ( 90.49
KOG1222791 consensus Kinesin associated protein KAP [Intracel 90.44
KOG2025892 consensus Chromosome condensation complex Condensi 90.43
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 90.32
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 90.1
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 89.59
KOG0567289 consensus HEAT repeat-containing protein [General 88.91
KOG4413524 consensus 26S proteasome regulatory complex, subun 88.9
KOG1293678 consensus Proteins containing armadillo/beta-caten 88.88
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 88.68
PF13251182 DUF4042: Domain of unknown function (DUF4042) 88.31
smart00638574 LPD_N Lipoprotein N-terminal Domain. 88.22
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 86.94
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 86.71
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 86.69
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 86.66
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 86.22
KOG2062929 consensus 26S proteasome regulatory complex, subun 86.0
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 85.71
cd06561197 AlkD_like A new structural DNA glycosylase. This d 85.27
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 84.94
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 84.18
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 84.0
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 83.67
COG5218885 YCG1 Chromosome condensation complex Condensin, su 83.0
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 82.75
KOG2933334 consensus Uncharacterized conserved protein [Funct 82.66
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 82.21
KOG2956516 consensus CLIP-associating protein [General functi 81.68
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 81.21
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 81.16
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 80.24
KOG04131529 consensus Uncharacterized conserved protein relate 80.16
KOG2032533 consensus Uncharacterized conserved protein [Funct 80.11
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=5.1e-107  Score=878.18  Aligned_cols=809  Identities=18%  Similarity=0.245  Sum_probs=643.3

Q ss_pred             CCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHH
Q 002971            3 VGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYL   82 (862)
Q Consensus         3 ~G~dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~~l   82 (862)
                      +|+|+.|++++.+++++|+.|++|.+|||+++.+.++++|++.|++|+++|||.|+||...+|||.++++|+..+|++.+
T Consensus        68 lg~dIdFGhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~  147 (938)
T KOG1077|consen   68 LGYDIDFGHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAF  147 (938)
T ss_pred             hcCccccchHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCC--CChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCcccccH
Q 002971           83 CDPLQRCLKD--DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS  160 (862)
Q Consensus        83 ~~~v~~~l~d--~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~l~~  160 (862)
                      .++|.|+|.+  +.+||||+||+|++++||..||++...+|.+++..+|+|+|.+|+.++..++.-|++..++.+..-.+
T Consensus       148 ~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~  227 (938)
T KOG1077|consen  148 ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP  227 (938)
T ss_pred             hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH
Confidence            9999999986  78999999999999999999999998899999999999999999999999999999988765433334


Q ss_pred             HHHHHHHHHhc-------------cCChhHHHHHHHHHhhccccc-HHHH---HHHHHHHHHhh---------cCCC--h
Q 002971          161 HTLSKLLTALN-------------ECTEWGQVFILDALSRYKAAD-AREA---ENIVERVTPRL---------QHAN--C  212 (862)
Q Consensus       161 ~~~~~Ll~~l~-------------~~~~w~q~~iL~~L~~~~~~~-~~~~---~~il~~v~~~l---------~~~n--~  212 (862)
                      ..+.+|.+...             -++||+|++++++|+.|.+.+ +...   .++++.++...         +|+|  .
T Consensus       228 ~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~n  307 (938)
T KOG1077|consen  228 LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKN  307 (938)
T ss_pred             HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHH
Confidence            44555544431             258999999999999996543 2222   23444444322         3444  4


Q ss_pred             HHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhcc-cCChhHHHHHHHHHHHHHhhCh--hhhhccce-EEEecC-C
Q 002971          213 AVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP--TILAHEIK-VFFCKY-N  287 (862)
Q Consensus       213 aV~~eai~~i~~~~~~~~~~~~~~~~~~~~~~~L~~ll-s~~~~iry~aL~~l~~i~~~~p--~~~~~~~~-~~~~l~-~  287 (862)
                      ||+|||+++++++ +  ++++++..    ....|+.++ ++++|+||++|+++.+++...+  +.+++|.. +|..+. +
T Consensus       308 aVLFeaI~l~~h~-D--~e~~ll~~----~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkte  380 (938)
T KOG1077|consen  308 AVLFEAISLAIHL-D--SEPELLSR----AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTE  380 (938)
T ss_pred             HHHHHHHHHHHHc-C--CcHHHHHH----HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccc
Confidence            9999999999997 3  46666664    445577788 5899999999999999998765  45777866 566666 8


Q ss_pred             CcHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHH
Q 002971          288 DPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQE  367 (862)
Q Consensus       288 d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e  367 (862)
                      .|.+||++++|+||.|||.+|++.||+||+.|+.++|..+|++++.+++.+|+||+++.+||||++++|++.+|+|+.+|
T Consensus       381 rDvSirrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsde  460 (938)
T KOG1077|consen  381 RDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDE  460 (938)
T ss_pred             cchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHH-HHHHHHHHhhcccccCC-----HHHHHHHHhhhCCCCCHHHHHH
Q 002971          368 AIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEA-KASMIWIIGEYAERIDN-----ADELLESFLESFPEEPAQVQLQ  441 (862)
Q Consensus       368 ~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~-~~~~~wilGEy~~~i~~-----~~~~l~~~~~~~~~e~~~v~~~  441 (862)
                      +|.++.+|+.++++.|.++.+++++++....-.+. ..+..||+||||++|.+     +...+..+.++|+.+++.+|+.
T Consensus       461 VW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~l  540 (938)
T KOG1077|consen  461 VWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRAL  540 (938)
T ss_pred             HHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHH
Confidence            99999999999999999999999999864222222 23557999999999975     6789999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcCCHHHHHHhhccCCCCCCCCCccCChhHHHH
Q 002971          442 LLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDE  521 (862)
Q Consensus       442 iLta~~Kl~~~~~~~~~~~~i~~~l~~~~~~s~~~dvrdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~ll~~  521 (862)
                      +||+.+||+..+|+  .++.|+++|+.. .+..|+|+||||+||+.|.....-.+.++|+++||||.++.    +.++.+
T Consensus       541 LLtTyiKl~nl~PE--i~~~v~~vFq~~-~n~~D~ElQqRa~EYLql~k~as~dvL~~vleeMPpF~er~----ssll~k  613 (938)
T KOG1077|consen  541 LLTTYIKLINLFPE--IKSNVQKVFQLY-SNLIDVELQQRAVEYLQLSKLASTDVLQTVLEEMPPFPERE----SSLLKK  613 (938)
T ss_pred             HHHHHHHHHhhChh--hhHHHHHHHHhh-cccCCHHHHHHHHHHHHHHHhccchHHHHHHhhCCCCcccc----chHHHH
Confidence            99999999999997  799999999975 56799999999999999998765567888999999998875    578887


Q ss_pred             HHHhcCcccccccCCcchhcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC-CCCCCC--
Q 002971          522 LLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSN-APYAATR-QPAPPP--  597 (862)
Q Consensus       522 l~~~~~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~--  597 (862)
                      |.+.         ||+..-.+..+...                 ...+..+..++++++.-.- .+..+.. -|+.|+  
T Consensus       614 l~~~---------~~~~~~l~~~~~~~-----------------~~~~~~~~~~~~tp~~v~~~s~st~~~~v~~~p~~n  667 (938)
T KOG1077|consen  614 LKKK---------KPSAISLRAGAGPK-----------------TLANPPPVASEPTPSKVSKRSNSTDPLSVPSPPPPN  667 (938)
T ss_pred             hhcc---------CCchhccccccCCc-----------------ccCCCCcccCCCCcccccCCCCCCCcccCCCCCCCC
Confidence            6432         33221111110000                 0000000001111110000 0001111 111111  


Q ss_pred             CCCCCCCCCCccccccc----CCCCCCcccCCCCCCCCC--CCccccccCCCCCceEEEEEEEeeCCeeEEEEEEEecCC
Q 002971          598 AAPVSPPVPDLLGDLIG----LDNSAAIVPADQAAASPV--PALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQ  671 (862)
Q Consensus       598 ~~~~~~~~~~~~~dl~~----~~~~~~~~p~~~~~~~~~--~~~~~l~~~~~~~gL~I~~~~~~~~~~~~l~l~~~N~s~  671 (862)
                      .+.++.+......|+|+    ..+.+.+.++|.-++.++  .+.|+++++   ..+||+++.+.+++++++.++|+|+++
T Consensus       668 ~t~~~~~~~~~~~di~s~~~~~~s~~~~p~~~~~~f~r~~~k~~GVLfed---~~iQIgvk~e~r~~~grl~LfygNkts  744 (938)
T KOG1077|consen  668 NTISSVNSQIPSVDIFSGLDGYYSRQILPGNAFYGFTRFCSKDNGVLFED---SLIQIGVKSETRNNLGRLYLFYGNKTS  744 (938)
T ss_pred             CCccCCCCCCCchhhhcCccccccccCCChhhhhhhhhheeccCcEEeec---cceeEEEeeeccCcCCeEEEEeccccc
Confidence            11111111222234443    222222334444444332  357888884   669999999999999999999999999


Q ss_pred             CCcccceeeeccc---ccCcccCCCCCCCcCCCCCeeeEEEeeeecCCCCCCCCCcceEEEEecCCCCeEEEEeccc--c
Q 002971          672 TPLDGFMIQFNKN---TFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKIS--L  746 (862)
Q Consensus       672 ~~it~f~~q~~~n---~~gl~~~~~~~~~~l~pg~~~~~~i~i~~~~~~~~~~~~~~l~~~~k~~~~~~~~~~l~~P--l  746 (862)
                      +++++|+.++-.+   .+.+..+..+..++|+||.|+++.+.+.|.+++.++| ++.+.|.++|..+ .+.-.+++|  +
T Consensus       745 ~~lt~~s~~ii~~~~~~~~L~~~~kpv~~ti~~g~qvQQ~~~v~~i~d~~d~p-il~isfk~g~ti~-~~ta~l~lp~~i  822 (938)
T KOG1077|consen  745 VPLTSLSPTIIPPGNLELHLAVQNKPVTATIPPGAQVQQSLEVSCIRDFEDPP-ILAISFKFGGTIN-LKTAILKLPVLI  822 (938)
T ss_pred             ccccccceeeecCCchhhhhhhcCcccCCCCCccceecceeeeeeecccccCC-eEEEEEEeCCchh-hhhhceechhhH
Confidence            9999999988753   3345554446667999999999999999999888854 7788888886555 455458888  4


Q ss_pred             ccccccCCCCChHHHHHHhccCCCC-ccceeecCCCccCCHHHHHHHHHhcCceeeeeccCCCCceEEEEEEec----CC
Q 002971          747 HVLFTEDGRMERGSFLETWRSLPDS-NEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIP----PG  821 (862)
Q Consensus       747 ~~l~~~~~~~~~~~F~~~W~~l~~~-~E~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~s~~~~----~~  821 (862)
                      +.+| +|..|+.++||.||+++++. +|.|+.++...+.+...+.+++.++|..++. .+|||+++++. +|++    .+
T Consensus       823 skf~-~Pt~l~s~~Ff~rWk~ls~~~~~~q~~fk~~rpld~~~l~~~l~gf~~~l~~-~VDpnp~nlv~-agii~t~tq~  899 (938)
T KOG1077|consen  823 SKFF-QPTELTSEDFFSRWKQLSGPQQEAQEVFKANRPLDAPSLENKLLGFGQTLLD-NVDPNPSNLVG-AGIIHTKSQN  899 (938)
T ss_pred             hhhc-CcccccHHHHHHHHHhcccchhHHHHHHhcCCccccHHHHHHHhhhhHHHhc-cCCCCccceEE-EEEEeeccee
Confidence            5555 68999999999999999995 6999999888888888899999999887775 69999987655 5553    47


Q ss_pred             ccEEEEEEeecCCCceEEEEecCCCchHHHHHHHHHHH
Q 002971          822 VPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETL  859 (862)
Q Consensus       822 ~~~L~~l~~~~~~~~~~ltvrs~~~~v~~~l~~~i~~~  859 (862)
                      +|||+|++++.++..+|+|+|++++.++..++++++..
T Consensus       900 vgCL~RiEpn~~~~~~rltvrss~~tlak~l~e~l~nq  937 (938)
T KOG1077|consen  900 VGCLLRIEPNAQAQMYRLTVRTSKPTLAKELVELLKNQ  937 (938)
T ss_pred             eeeEEEeccCCcceEEEEEEecCCchHHHHHHHHHhhc
Confidence            99999999998888999999999999999999998764

>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF02296 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal domain; InterPro: IPR003164 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF08752 COP-gamma_platf: Coatomer gamma subunit appendage platform subdomain; InterPro: IPR014863 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>cd06561 AlkD_like A new structural DNA glycosylase Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query862
1w63_B584 Ap1 Clathrin Adaptor Core Length = 584 0.0
2vgl_B591 Ap2 Clathrin Adaptor Core Length = 591 0.0
2xa7_B592 Ap2 Clathrin Adaptor Core In Active Complex With Ca 0.0
2iv9_A238 B2-Appendage From Ap2 In Complex With Eps15 Peptide 1e-27
3h1z_A260 Molecular Basis For The Association Of Pipkigamma - 2e-27
1e42_A258 Beta2-Adaptin Appendage Domain, From Clathrin Adapt 2e-27
1w63_A618 Ap1 Clathrin Adaptor Core Length = 618 5e-05
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core Length = 584 Back     alignment and structure 
Iteration: 1

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/543 (70%), Positives = 452/543 (83%), Gaps = 3/543 (0%)
Query: 1   MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
           MTVGKDVS+LF DVVNCMQT+NLELKKLVYLYL+NYAKSQPD+AI+AVNTFVKD +DPNP
Sbjct: 41  MTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDPNP 100
Query: 61  LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
           LIRALAVRTMGCIRVDKITEYLC+PL++CLKD+DPYVRKTAA+CVAKL+DINA++VED+G
Sbjct: 101 LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQG 160
Query: 121 FLESLKDLISDXX-XXXXXXXXXXXXXXXXXSSRPIFEITSHTLSKLLTALNECTEWGQV 179
           FL++LKDLISD                     S  + ++ + +++KLLTALNECTEW Q+
Sbjct: 161 FLDTLKDLISDSNPMVVANRVAALSEIAESHPSSNLLDLKAQSINKLLTALNECTEWAQI 220
Query: 180 FILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITST-DVVRNL 238
           FILD L  Y   D REA++I ERVTPRL HAN AVVLSAVK++++ ME+++   D    L
Sbjct: 221 FILDCLGNYMPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFMEMLSKDLDYYATL 280
Query: 239 CKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLE 298
            KK+APPLVTLLSAEPE QYV LRNINLIVQ+RP IL HE+KVFF KYNDPIYVK+EKL+
Sbjct: 281 LKKLAPPLVTLLSAEPEPQYVPLRNINLIVQKRPEILKHEMKVFFVKYNDPIYVKLEKLD 340
Query: 299 IMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK 358
           IMI+LAS  NI QVL E KEYATEVDVDFVRKAVRAIGRCAIK+E++AERC+S LL+LI+
Sbjct: 341 IMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQ 400
Query: 359 IKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID 418
            KVNYVVQEAI+VIKDIFR+YPN YES+IATLCE+LD+ DEPEA+A+MIWI+GEYAER D
Sbjct: 401 TKVNYVVQEAIVVIKDIFRKYPNKYESVIATLCENLDSDDEPEARAAMIWIVGEYAERSD 460
Query: 419 NADXXXXXXXXXXXXXXAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL 478
           NAD               QVQLQLLTA VKLFLKKPTE  Q+++Q VL+ AT ++DNPDL
Sbjct: 461 NADELLESFLDGFHDESTQVQLQLLTAIVKLFLKKPTET-QELVQQVLSLATQDSDNPDL 519
Query: 479 RDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPE 538
           RDR YIYWRLLSTDP AAK+VVLAEKP+IS++++ ++P+LLDEL+  I TL+SVYHKPP 
Sbjct: 520 RDRGYIYWRLLSTDPVAAKEVVLAEKPLISEETDLIEPTLLDELICYIGTLASVYHKPPN 579
Query: 539 AFV 541
           AFV
Sbjct: 580 AFV 582
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core Length = 591 Back     alignment and structure
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 592 Back     alignment and structure
>pdb|2IV9|A Chain A, B2-Appendage From Ap2 In Complex With Eps15 Peptide Length = 238 Back     alignment and structure
>pdb|3H1Z|A Chain A, Molecular Basis For The Association Of Pipkigamma -P90 With The Clathrin Adaptor Ap-2 Length = 260 Back     alignment and structure
>pdb|1E42|A Chain A, Beta2-Adaptin Appendage Domain, From Clathrin Adaptor Ap2 Length = 258 Back     alignment and structure
>pdb|1W63|A Chain A, Ap1 Clathrin Adaptor Core Length = 618 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query862
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 0.0
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 1e-162
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 1e-162
2g30_A258 AP-2 complex subunit beta-1; alpha-helical ARH pep 5e-75
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 7e-64
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 3e-16
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 2e-11
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 3e-11
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 6e-10
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 3e-11
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 7e-06
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 6e-11
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 9e-10
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 6e-10
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-07
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 4e-06
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 7e-05
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 1e-09
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 1e-09
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 2e-09
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 2e-08
2db0_A253 253AA long hypothetical protein; heat repeats, hel 4e-09
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-08
2db0_A253 253AA long hypothetical protein; heat repeats, hel 5e-06
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 2e-07
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 2e-04
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 3e-04
1qgr_A876 Protein (importin beta subunit); transport recepto 1e-06
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 6e-06
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 2e-05
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 5e-05
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 2e-04
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 7e-05
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 4e-04
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 8e-05
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 2e-04
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 5e-04
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 6e-04
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
 Score =  712 bits (1840), Expect = 0.0
 Identities = 402/543 (74%), Positives = 482/543 (88%), Gaps = 3/543 (0%)

Query: 1   MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
           MTVGKDVSSLF DVVNCMQT+NLELKKLVYLYL+NYAKSQPD+AI+AVN+FVKD +DPNP
Sbjct: 41  MTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNP 100

Query: 61  LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
           LIRALAVRTMGCIRVDKITEYLC+PL++CLKD+DPYVRKTAA+CVAKL+DINA++VED+G
Sbjct: 101 LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQG 160

Query: 121 FLESLKDLISDNNPMVVANAVAALAEI-EENSSRPIFEITSHTLSKLLTALNECTEWGQV 179
           FL+SL+DLI+D+NPMVVANAVAAL+EI E + +  + ++    ++KLLTALNECTEWGQ+
Sbjct: 161 FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQI 220

Query: 180 FILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELI-TSTDVVRNL 238
           FILD LS Y   D REA++I ERVTPRL HAN AVVLSAVK++++ +EL+   +D    L
Sbjct: 221 FILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML 280

Query: 239 CKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLE 298
            KK+APPLVTLLS EPE+QYVALRNINLIVQ+RP IL  EIKVFF KYNDPIYVK+EKL+
Sbjct: 281 LKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLD 340

Query: 299 IMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK 358
           IMI+LAS  NI QVL E KEYATEVDVDFVRKAVRAIGRCAIK+E++AERC+S LL+LI+
Sbjct: 341 IMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQ 400

Query: 359 IKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID 418
            KVNYVVQEAI+VI+DIFR+YPN YESIIATLCE+LD+LDEP+A+A+MIWI+GEYAERID
Sbjct: 401 TKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERID 460

Query: 419 NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL 478
           NADELLESFLE F +E  QVQL LLTA VKLFLKKP+E  Q+++Q VL+ AT ++DNPDL
Sbjct: 461 NADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET-QELVQQVLSLATQDSDNPDL 519

Query: 479 RDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPE 538
           RDR YIYWRLLSTDP  AK+VVL+EKP+IS++++ ++P+LLDEL+ +I +L+SVYHKPP 
Sbjct: 520 RDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPN 579

Query: 539 AFV 541
           AFV
Sbjct: 580 AFV 582
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621 Back     alignment and structure
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A Length = 258 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Length = 507 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query862
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 100.0
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 100.0
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 100.0
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 100.0
2g30_A258 AP-2 complex subunit beta-1; alpha-helical ARH pep 100.0
3hs8_A273 Adaptor protein complex AP-2, alpha 2 subunit; ada 99.96
1kyf_A247 Alpha-adaptin C; protein-peptide complex, endocyto 99.95
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.73
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.62
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.58
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.57
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.56
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.52
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.5
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.49
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.49
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.47
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.46
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.45
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.42
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.39
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.39
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.39
1qgr_A876 Protein (importin beta subunit); transport recepto 99.37
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.35
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.34
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.33
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.33
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.32
1qgr_A876 Protein (importin beta subunit); transport recepto 99.32
1r4x_A275 Gamma1-COP, coatomer gamma subunit; appendage, bet 99.31
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.28
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.28
1pzd_A322 Coatomer gamma subunit; platform domain, appendage 99.27
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.25
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.22
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.2
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.19
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.18
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.14
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.11
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.07
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.06
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.03
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.98
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.93
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.9
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.87
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.86
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.8
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.79
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.74
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.71
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.64
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.55
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.5
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.42
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 98.41
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.4
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.33
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.32
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.32
2x19_B963 Importin-13; nuclear transport, protein transport; 98.31
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.25
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.22
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 98.21
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.19
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.17
3nmz_A458 APC variant protein; protein-protein complex, arma 98.15
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.12
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.06
2x1g_F971 Cadmus; transport protein, developmental protein, 98.03
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 98.0
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.97
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.94
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.84
3nmz_A458 APC variant protein; protein-protein complex, arma 97.82
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.8
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.79
2x19_B963 Importin-13; nuclear transport, protein transport; 97.76
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.72
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.65
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 97.65
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 97.65
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 97.55
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 97.55
2x1g_F971 Cadmus; transport protein, developmental protein, 97.54
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 97.5
3grl_A651 General vesicular transport factor P115; vesicle t 97.31
3grl_A651 General vesicular transport factor P115; vesicle t 97.31
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 97.16
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 97.16
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 97.11
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 97.07
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 96.96
3mnm_A123 ADP-ribosylation factor-binding protein GGA2; IG-l 96.93
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 96.92
1iu1_A146 Gamma1-adaptin; coated PITS, endocytosis; 1.80A {H 96.73
3zy7_A122 AP-1 complex subunit gamma-1; endocytosis, protein 96.7
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 96.5
2e9g_A131 AP-1 complex subunit gamma-2; beta-sandwich, immun 96.33
1gyu_A140 Adapter-related protein complex 1 gamma 1 subunit; 96.02
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 95.65
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 95.62
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 95.54
2iw3_A986 Elongation factor 3A; acetylation, ATP-binding, pr 95.54
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 95.51
1p4u_A153 ADP-ribosylation factor binding protein GGA3; prot 95.48
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 95.38
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 95.29
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 95.26
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 95.19
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 95.04
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 94.1
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 93.6
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 93.33
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 92.63
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 91.81
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 91.66
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 91.21
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 90.39
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 89.04
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 87.89
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 86.38
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 86.27
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 86.25
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 85.76
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 83.02
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
Probab=100.00  E-value=4.2e-87  Score=793.18  Aligned_cols=544  Identities=74%  Similarity=1.173  Sum_probs=514.5

Q ss_pred             CCCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 002971            1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE   80 (862)
Q Consensus         1 mt~G~dvs~lf~~vv~l~~s~~~~~Kkl~Yl~l~~~~~~~~el~~L~intl~kDl~~~n~~ir~lALr~l~~i~~~~~~~   80 (862)
                      |++|+|++++|++++++++++|+++||+||+|++.+++.+||++++++|+|+|||+|+||.+|++||++||+++.+++++
T Consensus        41 ~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~  120 (591)
T 2vgl_B           41 MTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITE  120 (591)
T ss_dssp             HHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHH
T ss_pred             HHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC-ccccc
Q 002971           81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEIT  159 (862)
Q Consensus        81 ~l~~~v~~~l~d~~~yVRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~-~~~l~  159 (862)
                      ++.+.|++++.|++|||||+|+.|+.++++.+|+.+++.+|++.+.++|+|+|++|+.+|+.+|.+|+.++++. .+.+.
T Consensus       121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~  200 (591)
T 2vgl_B          121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN  200 (591)
T ss_dssp             HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence            99999999999999999999999999999999999987679999999999999999999999999999987765 57788


Q ss_pred             HHHHHHHHHHhccCChhHHHHHHHHHhhcccccHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhcc-CChHHHHHH
Q 002971          160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELI-TSTDVVRNL  238 (862)
Q Consensus       160 ~~~~~~Ll~~l~~~~~w~q~~iL~~L~~~~~~~~~~~~~il~~v~~~l~~~n~aV~~eai~~i~~~~~~~-~~~~~~~~~  238 (862)
                      +..+.+|++.+.+++||+|+++|++|..|.+.++++...+++.+.++++|.|++|+++|+++++++.+.+ .+++.++.+
T Consensus       201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~  280 (591)
T 2vgl_B          201 PQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML  280 (591)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH
T ss_pred             HHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence            8889999999999999999999999999999998888999999999999999999999999999975433 245667767


Q ss_pred             HHhcccchhhcccCChhHHHHHHHHHHHHHhhChhhhhccceEEEecCCCcHHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q 002971          239 CKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE  318 (862)
Q Consensus       239 ~~~~~~~L~~lls~~~~iry~aL~~l~~i~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~  318 (862)
                      ..++.++|++++++++|+||+||++|..+++.+|+.+.+|++.|+|+.+||.+||++|+++|+.|++++|++.|++||.+
T Consensus       281 ~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~  360 (591)
T 2vgl_B          281 LKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKE  360 (591)
T ss_dssp             HHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHH
Confidence            77788888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCC
Q 002971          319 YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD  398 (862)
Q Consensus       319 y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~  398 (862)
                      |+.+.|.++|++++++||.||.+|++.++||+++|+++++..++++.+++|.++++|++++|+.+++++..|++.++++.
T Consensus       361 ~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~  440 (591)
T 2vgl_B          361 YATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLD  440 (591)
T ss_dssp             HTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCC
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHhhcccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHH
Q 002971          399 EPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL  478 (862)
Q Consensus       399 ~~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~~~~~~~~~i~~~l~~~~~~s~~~dv  478 (862)
                      +|+++++++|++||||+.+++++++++.++++|.++++.||.++|+|++|++.+.|++ .++.++++|+.+..++.|+||
T Consensus       441 ~~~~~~~~~wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~~~i~~ll~~~~~d~~d~ev  519 (591)
T 2vgl_B          441 EPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQELVQQVLSLATQDSDNPDL  519 (591)
T ss_dssp             SHHHHHHHHHHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-THHHHHHHHHHHHTTCCCHHH
T ss_pred             CHHHHHHHHHHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhcCCChHH
Confidence            9999999999999999999999999999999999999999999999999999999975 668999999998777899999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHhhccCCCCCCCCCccCChhHHHHHHHhcCcccccccCCcchhccccc
Q 002971          479 RDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVK  545 (862)
Q Consensus       479 rdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~ll~~l~~~~~~~~~vy~~~~~~~~~~~~  545 (862)
                      ||||++||+||+.+++.++++|+++||+++.+.+..+++++++|+.++||+|++|+||++.|+++.+
T Consensus       520 rdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~~~  586 (591)
T 2vgl_B          520 RDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFVEGSH  586 (591)
T ss_dssp             HHHHHHHHTTTTTCTTHHHHHHTSCCCCCCSCSSCCCHHHHHHHHTTTTSSHHHHTSCGGGCC----
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHcCCCCCCCCCccccCHHHHHHHHHHhCcchhhhcCCHHHHcCCcc
Confidence            9999999999998888999999999999999888899999999999999999999999999987644
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A Back     alignment and structure
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus} Back     alignment and structure
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2 Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2 Back     alignment and structure
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2 Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 862
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 1e-174
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 1e-120
d1e42a2113 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-termina 7e-46
d1e42a1120 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, 2e-44
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 4e-14
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 7e-07
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 5e-08
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 0.001
d1oyza_276 a.118.1.16 (A:) Hypothetical protein YibA {Escheri 1e-07
d1oyza_276 a.118.1.16 (A:) Hypothetical protein YibA {Escheri 4e-06
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 5e-07
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 9e-07
d1te4a_111 a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium 2e-06
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 1e-04
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 0.002
>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure
>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 111 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query862
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 100.0
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 100.0
d1e42a1120 Beta2-adaptin AP2 ear domain, N-terminal subdomain 99.88
d1e42a2113 Beta2-adaptin AP2, C-terminal subdomain {Human (Ho 99.82
d1kyfa2114 Alpa-adaptin AP2, C-terminal subdomain {Mouse (Mus 99.71
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.69
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.52
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.39
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.29
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.24
d1kyfa1133 Alpha-adaptin AP2 ear domain, N-terminal subdomain 99.19
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.11
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.1
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.09
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.06
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.04
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.01
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.94
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.92
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.87
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.85
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.8
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.77
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.67
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.66
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.61
d1r4xa2111 Coatomer gamma subunit, C-terminal subdomain {Huma 98.55
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.44
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.37
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.3
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.29
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.29
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.77
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 97.72
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 97.71
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.12
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 96.66
d1gyva_120 Gamma1-adaptin domain {Human (Homo sapiens) [TaxId 96.38
d2dwya1129 ADP-ribosylation factor binding protein Gga1 domai 96.2
d1p4ua_145 ADP-ribosylation factor binding protein Gga3 domai 95.93
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 95.56
d1r4xa1163 Coatomer gamma subunit C-terminal domain, first su 94.27
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 94.0
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 93.64
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 89.61
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 85.37
>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kyfa2 d.105.1.1 (A:825-938) Alpa-adaptin AP2, C-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kyfa1 b.1.10.1 (A:692-824) Alpha-adaptin AP2 ear domain, N-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r4xa2 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dwya1 b.1.10.2 (A:511-639) ADP-ribosylation factor binding protein Gga1 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p4ua_ b.1.10.2 (A:) ADP-ribosylation factor binding protein Gga3 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1r4xa1 b.1.10.3 (A:600-762) Coatomer gamma subunit C-terminal domain, first subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure