Citrus Sinensis ID: 003020
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 856 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LS88 | 842 | Pentatricopeptide repeat- | yes | no | 0.963 | 0.979 | 0.624 | 0.0 | |
| Q9C9U0 | 991 | Pentatricopeptide repeat- | no | no | 0.816 | 0.705 | 0.408 | 1e-158 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.610 | 0.638 | 0.248 | 1e-53 | |
| Q9FLD8 | 678 | Pentatricopeptide repeat- | no | no | 0.633 | 0.799 | 0.235 | 2e-53 | |
| Q9SZ52 | 1112 | Pentatricopeptide repeat- | no | no | 0.681 | 0.524 | 0.261 | 4e-50 | |
| O64624 | 822 | Pentatricopeptide repeat- | no | no | 0.616 | 0.642 | 0.261 | 8e-49 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.674 | 0.729 | 0.237 | 4e-45 | |
| Q9FIT7 | 974 | Pentatricopeptide repeat- | no | no | 0.665 | 0.585 | 0.226 | 1e-44 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.538 | 0.732 | 0.253 | 2e-43 | |
| P0C894 | 761 | Putative pentatricopeptid | no | no | 0.654 | 0.735 | 0.244 | 7e-43 |
| >sp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protein At3g23020 OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1058 bits (2736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/868 (62%), Positives = 656/868 (75%), Gaps = 43/868 (4%)
Query: 1 MFVKLQLDTSCFYVLCSTKTSP-SSNIGASASVSVSSLEKKIETQTLLNNSNSERVKRLS 59
M + L+LD S +VLCSTKT P SS + S KK++ + S++ + S
Sbjct: 1 MLLNLRLDGSSLHVLCSTKTLPISSPLDKFPSF------KKLKQNYVPGTHESDKGPQRS 54
Query: 60 KVHNHSKFDKPNGVV-HEHELKKQSFEQKPHRE-QSKNTWVDVRIGNERRTDVISAVCVN 117
+ D+ G V HE K P K+ +D + + +
Sbjct: 55 TRNG----DRGCGTVAHEVVAGKNLLLVNPSNGCVGKSGIIDGFVDKRSKDARFGGNGLV 110
Query: 118 GEVQTKCSTKWARYGGCIPSMLQALDTVKDLDEALKPWAENLSNKERSIILKEQSSWERA 177
EV TKCSTK YGGCIP++L+ALD+++D+++AL PWAE LSNKER+IILKEQ WERA
Sbjct: 111 SEVHTKCSTKRLSYGGCIPAILEALDSIEDVEDALSPWAERLSNKERTIILKEQIHWERA 170
Query: 178 LEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLID 237
+EIFEWFK + C+ELNVIHYNIMLR LGKA KW YVQSLWDEM KGI PINSTYGTLID
Sbjct: 171 VEIFEWFKSKGCYELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGIKPINSTYGTLID 230
Query: 238 VCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLR 297
V SKGGLK A+CWL +M++ GM+PDEVT GIV+QMYKKA EFQKAEEFFKKWS E+
Sbjct: 231 VYSKGGLKVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEEFFKKWSCDEN-- 288
Query: 298 HGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTV 357
+ SHV LSSYTYNT+IDTYGK+GQ+KEASETF +ML EGIVPTTV
Sbjct: 289 ------------KADSHV--CLSSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTV 334
Query: 358 TFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKM 417
TFNTMIHIYGNN QL EV SL+K M+ LHC PDTRTYNILI LH KN+ I A YF +M
Sbjct: 335 TFNTMIHIYGNNGQLGEVTSLMKTMK-LHCAPDTRTYNILISLHTKNNDIERAGAYFKEM 393
Query: 418 KEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGML 477
K+ L+PD VSYRTLLYA+SIR MV EAE LI+EMD +EIDEYTQSALTRMY+EA ML
Sbjct: 394 KDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLIAEMDDDNVEIDEYTQSALTRMYVEAEML 453
Query: 478 EKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVK 537
EKSW WF+RFH+AG+MSSEGYSANID YGERG++ EAER FICCQE K TV+ +NVM+K
Sbjct: 454 EKSWSWFKRFHVAGNMSSEGYSANIDAYGERGYLSEAERVFICCQEVNKRTVIEYNVMIK 513
Query: 538 AYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVS 597
AYG+ ++ +KAC LF+SM S+G PDKC+YN+L+QILA AD+PH + YL KM+E G VS
Sbjct: 514 AYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPHKGRCYLEKMRETGYVS 573
Query: 598 DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYF 657
DCIPYCAVISS++KLGQL MAEEVYK+M+ +N+EPDVVVYGVLINAFAD GNV+QA SY
Sbjct: 574 DCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYV 633
Query: 658 DAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETY-KLLRSLEAS--PDVYTSNCMIDLY 714
+AM+ AG+P N+VIYNSLIKLYTKVGYL EA+ Y KLL+S + PDVYTSNCMI+LY
Sbjct: 634 EAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTSNCMINLY 693
Query: 715 SERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLL 774
SERSMVR+AE IF+ MK++G+ANEFT+AMML MYK+NGRFEEAT+IAKQMRE +++D L
Sbjct: 694 SERSMVRKAEAIFDSMKQRGEANEFTFAMMLCMYKKNGRFEEATQIAKQMREMKILTDPL 753
Query: 775 SYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCGL--------ELT 826
SYN+VLGL+A+DGRFK+ + TFK+MV++ IQPDD TFKSLG +LMK G+ E
Sbjct: 754 SYNSVLGLFALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILMKLGMSKKAVRKIEEI 813
Query: 827 RKKNAQSGLQAWMSTLSSV--IEECDDD 852
RKK + GL+ W+STLSS+ I +C D+
Sbjct: 814 RKKEIKRGLELWISTLSSLVGIGDCVDE 841
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C9U0|PP118_ARATH Pentatricopeptide repeat-containing protein At1g73710 OS=Arabidopsis thaliana GN=At1g73710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 559 bits (1440), Expect = e-158, Method: Compositional matrix adjust.
Identities = 300/735 (40%), Positives = 450/735 (61%), Gaps = 36/735 (4%)
Query: 125 STKWARYGGCIPSMLQALDTVKDLDEALKPWAENLSNKERSIILKEQSSWERALEIFEWF 184
S++ +YGG IPS+L++LD+ D++ L NLS KE++++LKEQ+ WER L +F +F
Sbjct: 76 SSRKRKYGGVIPSILRSLDSSTDIETTLASLCLNLSPKEQTVLLKEQTRWERVLRVFRFF 135
Query: 185 KRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGL 244
+ + + NVIHYNI+LR LG+A KW ++ W EM+ G++P N+TYG L+DV K GL
Sbjct: 136 QSHQSYVPNVIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYGMLVDVYGKAGL 195
Query: 245 KEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRE---------- 294
+EA+ W++ M + PDEVTM VV+++K +GEF +A+ FFK W + +
Sbjct: 196 VKEALLWIKHMGQRMHFPDEVTMATVVRVFKNSGEFDRADRFFKGWCAGKVDLDLDSIDD 255
Query: 295 -----SLRHGEDTKTMIG----------KVENGSH-VNGSLSS-------YTYNTLIDTY 331
S + + K + +E H +GS SS T+NTLID Y
Sbjct: 256 FPKNGSAQSPVNLKQFLSMELFKVGARNPIEKSLHFASGSDSSPRKPRLTSTFNTLIDLY 315
Query: 332 GKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDT 391
GKAG+L +A+ F++ML+ G+ TVTFNTMIH G + L+E +SL+KKMEE PDT
Sbjct: 316 GKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKMEEKGISPDT 375
Query: 392 RTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISE 451
+TYNIL+ LHA I A Y+ K+++ L PD V++R +L+ R+MV E E +I+E
Sbjct: 376 KTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRKMVAEVEAVIAE 435
Query: 452 MDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHV 511
MD + IDE++ + +MY+ G++ ++ F RF L +SS +A ID Y E+G
Sbjct: 436 MDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFERFQLDCVLSSTTLAAVIDVYAEKGLW 495
Query: 512 LEAERAFICCQ--EGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNS 569
+EAE F + G++ VL +NVM+KAYG + ++KA +LF M + G PD+C+YNS
Sbjct: 496 VEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNS 555
Query: 570 LIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFN 629
L Q+LAG DL A+R L +M ++G C Y A+I+SY++LG L A ++Y+ M +
Sbjct: 556 LFQMLAGVDLVDEAQRILAEMLDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTG 615
Query: 630 VEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQ 689
V+P+ VVYG LIN FA+ G V++A YF ME G+ N ++ SLIK Y+KVG L+EA+
Sbjct: 616 VKPNEVVYGSLINGFAESGMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEAR 675
Query: 690 ETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYK 749
Y ++ E PDV SN M+ L ++ +V +AE IF +++KG + ++A M+ +YK
Sbjct: 676 RVYDKMKDSEGGPDVAASNSMLSLCADLGIVSEAESIFNALREKGTCDVISFATMMYLYK 735
Query: 750 RNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDM-VNAAIQPDD 808
G +EA +A++MRESGL+SD S+N V+ YA DG+ + F +M V + D
Sbjct: 736 GMGMLDEAIEVAEEMRESGLLSDCTSFNQVMACYAADGQLSECCELFHEMLVERKLLLDW 795
Query: 809 FTFKSLGAVLMKCGL 823
TFK+L +L K G+
Sbjct: 796 GTFKTLFTLLKKGGV 810
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 157/633 (24%), Positives = 264/633 (41%), Gaps = 110/633 (17%)
Query: 263 DEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNG-SLSS 321
D + I++ M K G A F NG +G SL
Sbjct: 172 DNSVVAIIISMLGKEGRVSSAANMF-----------------------NGLQEDGFSLDV 208
Query: 322 YTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGN-NDQLAEVDSLIK 380
Y+Y +LI + +G+ +EA F +M +G PT +T+N +++++G ++ SL++
Sbjct: 209 YSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVE 268
Query: 381 KMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRR 440
KM+ PD TYN LI + A++ F +MK A D V+Y LL Y
Sbjct: 269 KMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSH 328
Query: 441 MVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEG--- 497
EA ++++EM G T ++L Y GML+++ L M+ +G
Sbjct: 329 RPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEA------MELKNQMAEKGTKP 382
Query: 498 ----YSANIDGYGERGHVLEAERAFICCQE-GKKLTVLVFNVMVKAYGMGRNYDKACNLF 552
Y+ + G+ G V A F + G K + FN +K YG + + +F
Sbjct: 383 DVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIF 442
Query: 553 DSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKL 612
D + G PD ++N+L+ + + ++M+ AG V + + +IS+Y +
Sbjct: 443 DEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRC 502
Query: 613 GQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIY 672
G E A VY+ M+ V PD+ Y ++ A A G +Q++ ME PN + Y
Sbjct: 503 GSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTY 562
Query: 673 NSLIKLY-----------------------------------TKVGYLKEAQETYKLLRS 697
SL+ Y +K L EA+ + L+
Sbjct: 563 CSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKE 622
Query: 698 LEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG----------------------- 734
SPD+ T N M+ +Y R MV +A + + MK++G
Sbjct: 623 RGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGK 682
Query: 735 -------------DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLG 781
+ +Y ++ Y RN R +A+RI +MR SG++ D+++YN +G
Sbjct: 683 SEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIG 742
Query: 782 LYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSL 814
YA D F++ IG + M+ +P+ T+ S+
Sbjct: 743 SYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSI 775
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 143/608 (23%), Positives = 281/608 (46%), Gaps = 66/608 (10%)
Query: 167 ILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIV 226
+L ++ W+R+L + +W + + +V YN++LR + +A+++ L+DEM + +
Sbjct: 128 LLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALA 187
Query: 227 PINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEF 286
P TY TLI K G+ + A+ WL++M + + D V ++++ ++ ++ KA
Sbjct: 188 PDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISI 247
Query: 287 FKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQ 346
F + L+ T ++ YN++I+ YGKA +EA +
Sbjct: 248 FSR------LKRSGITPDLVA----------------YNSMINVYGKAKLFREARLLIKE 285
Query: 347 MLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDK 406
M G++P TV+++T++ +Y N + E S+ +M+E++C D T NI+I ++ + D
Sbjct: 286 MNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDM 345
Query: 407 ISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSA 466
+ A R FW +++ ++EP++VSY T+L Y + EA L M +E + T +
Sbjct: 346 VKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNT 405
Query: 467 LTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKK 526
+ ++Y + EK+ +L +M S G N
Sbjct: 406 MIKIYGKTMEHEKAT------NLVQEMQSRGIEPN------------------------- 434
Query: 527 LTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRY 586
+ ++ ++ +G D+A LF + S G D+ Y ++I L AKR
Sbjct: 435 --AITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRL 492
Query: 587 LRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFAD 646
L +++ + D IP I+ K G+ E A V++ D+ V+G +IN ++
Sbjct: 493 LHELK----LPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSR 548
Query: 647 VGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYT 706
F+ M +AG P++ + ++ Y K ++A Y R ++ V+
Sbjct: 549 NQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVY---REMQEEGCVFP 605
Query: 707 SNC---MIDLYSERSMVRQAEEIFEIMKKKGDAN-EFTYAMMLIMYKRNGRFEEATRIAK 762
M+ LYS + E +F+ ++ + N + + ++ +Y+R + +A+R+
Sbjct: 606 DEVHFQMLSLYSSKKDFEMVESLFQRLESDPNVNSKELHLVVAALYERADKLNDASRVMN 665
Query: 763 QMRESGLI 770
+MRE G++
Sbjct: 666 RMRERGIL 673
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 200 bits (508), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 168/642 (26%), Positives = 287/642 (44%), Gaps = 59/642 (9%)
Query: 177 ALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLI 236
ALE FE K + N++ N L +L KA + + ++ + G+VP + TY ++
Sbjct: 452 ALETFEKMKTKGIAP-NIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMM 510
Query: 237 DVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESL 296
SK G +EA+ L M E G EPD + + ++ KA +A W +
Sbjct: 511 KCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEA------WKMFMRM 564
Query: 297 RHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTT 356
+ + T++ TYNTL+ GK G+++EA E F M+++G P T
Sbjct: 565 KEMKLKPTVV----------------TYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNT 608
Query: 357 VTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWK 416
+TFNT+ ND++ ++ KM ++ C PD TYN +IF KN ++ A +F +
Sbjct: 609 ITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQ 668
Query: 417 MKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGM 476
MK+ + PD V+ TLL ++ +A ++I T
Sbjct: 669 MKKL-VYPDFVTLCTLLPGVVKASLIEDAYKII------------------TNFLYNCAD 709
Query: 477 LEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMV 536
+ W L G + +E N + ER L A C++G + V +
Sbjct: 710 QPANLFWE---DLIGSILAEAGIDNAVSFSER---LVANGI---CRDGDSILVPIIRYSC 760
Query: 537 KAYGMGRNYDKACNLFDSMTSH-GAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGL 595
K N A LF+ T G P +YN LI L AD+ +A+ +++ G
Sbjct: 761 KH----NNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGC 816
Query: 596 VSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQS 655
+ D Y ++ +Y K G+++ E+YK+M E + + + ++I+ GNV A
Sbjct: 817 IPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALD 876
Query: 656 -YFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLY 714
Y+D M P A Y LI +K G L EA++ ++ + P+ N +I+ +
Sbjct: 877 LYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGF 936
Query: 715 SERSMVRQAEEIFEIMKKKGDANEF-TYAMMLIMYKRNGRFEEATRIAKQMRESGLISDL 773
+ A +F+ M K+G + TY++++ GR +E K+++ESGL D+
Sbjct: 937 GKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDV 996
Query: 774 LSYNNVLGLYAVDGRFKDVIGTFKDM-VNAAIQPDDFTFKSL 814
+ YN ++ R ++ + F +M + I PD +T+ SL
Sbjct: 997 VCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSL 1038
|
Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (498), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 149/569 (26%), Positives = 257/569 (45%), Gaps = 41/569 (7%)
Query: 174 WERALEIFEWFKRQECHELNVIHYNIMLRTLGK-ARKWSYVQSLWDEMSVKGIVPINSTY 232
+E+A+++FE K ++ YN++L GK R W + + DEM KG+ T
Sbjct: 226 YEKAIDLFERMKEMGPSP-TLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTC 284
Query: 233 GTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSS 292
T++ C++ GL EA + + G EP VT ++Q++ KAG + +A K+
Sbjct: 285 STVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEE 344
Query: 293 R----ESLRHGE---------DTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKE 339
+S+ + E +K G +E + ++ TY T+ID YGKAG+ E
Sbjct: 345 NSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDE 404
Query: 340 ASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIF 399
A + F M G VP T T+N ++ + G + E+ ++ M+ C P+ T+N ++
Sbjct: 405 ALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLA 464
Query: 400 LHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEI 459
L +R F +MK EPD ++ TL+ AY +A ++ EM G
Sbjct: 465 LCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNA 524
Query: 460 DEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEG-------YSANIDGYGERGHVL 512
T +AL G W ++ DM S+G YS + Y + G+ L
Sbjct: 525 CVTTYNALLNALARKGD------WRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYL 578
Query: 513 EAERAFICCQEGKKL-------TVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKC 565
ER +EG+ T+L+ N +A ++A LF HG PD
Sbjct: 579 GIERIENRIKEGQIFPSWMLLRTLLLANFKCRALA---GSERAFTLFK---KHGYKPDMV 632
Query: 566 SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDM 625
+NS++ I ++ A+ L ++E GL D + Y +++ Y++ G+ AEE+ K +
Sbjct: 633 IFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTL 692
Query: 626 IRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYL 685
+ ++PD+V Y +I F G +++A M G+ P YN+ + YT +G
Sbjct: 693 EKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMF 752
Query: 686 KEAQETYKLLRSLEASPDVYTSNCMIDLY 714
E ++ + + + P+ T ++D Y
Sbjct: 753 AEIEDVIECMAKNDCRPNELTFKMVVDGY 781
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (465), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 151/637 (23%), Positives = 283/637 (44%), Gaps = 60/637 (9%)
Query: 192 LNVIHYNIMLRTLGKARKWSYVQSL-WDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVC 250
++ I + +L+ L ++ S + M+ G +P +Y L+ +EA+
Sbjct: 120 VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALE 179
Query: 251 WLERMNE---GGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIG 307
L M + GG PD V+ V+ + K G+ KA + + R L
Sbjct: 180 LLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILP---------- 229
Query: 308 KVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYG 367
TYN++I KA + +A E M++ G++P +T+N+++H Y
Sbjct: 230 ------------DVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYC 277
Query: 368 NNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIV 427
++ Q E +KKM PD TY++L+ KN + A + F M + L+P+I
Sbjct: 278 SSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEIT 337
Query: 428 SYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRF 487
+Y TLL Y+ + + E L+ M G+ D Y S L Y + G ++++ L F +
Sbjct: 338 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSK- 396
Query: 488 HLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDK 547
M +G + N YG +L C+ G+ +++
Sbjct: 397 -----MRQQGLNPNAVTYGAVIGIL--------CKSGRVEDAMLY--------------- 428
Query: 548 ACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVIS 607
F+ M G P YNSLI L + A+ + +M + G+ + I + ++I
Sbjct: 429 ----FEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIID 484
Query: 608 SYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPP 667
S+ K G++ +E++++ M+R V+P+V+ Y LIN + G + +A M S GL P
Sbjct: 485 SHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKP 544
Query: 668 NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIF 727
N V Y++LI Y K+ +++A +K + S SPD+ T N ++ + A+E++
Sbjct: 545 NTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 604
Query: 728 EIMKKKGDANEF-TYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVD 786
+ + G E TY ++L +N ++A ++ + + L + ++N ++
Sbjct: 605 VRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKV 664
Query: 787 GRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCGL 823
GR + F + + P+ +T++ + ++ GL
Sbjct: 665 GRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGL 701
|
Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 151/668 (22%), Positives = 271/668 (40%), Gaps = 98/668 (14%)
Query: 197 YNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMN 256
Y++++ L K ++ +SL EM G+ N TY LID KG + A + M
Sbjct: 280 YDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMV 339
Query: 257 EGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVN 316
G+ + + K G +KA+ F +G +
Sbjct: 340 SHGINIKPYMYDCCICVMSKEGVMEKAKALF-----------------------DGMIAS 376
Query: 317 GSL-SSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEV 375
G + + Y +LI+ Y + +++ E +M + IV + T+ T++ ++ L
Sbjct: 377 GLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGA 436
Query: 376 DSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYA 435
+++K+M C P+ Y LI +N + A R +MKE + PDI Y +L+
Sbjct: 437 YNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIG 496
Query: 436 YSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSS 495
S + + EA + EM GL+ + +T A YIEA + + + G + +
Sbjct: 497 LSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPN 556
Query: 496 EGYSAN-IDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDS 554
+ I+ Y ++G V+EA C+ + S
Sbjct: 557 KVLCTGLINEYCKKGKVIEA----------------------------------CSAYRS 582
Query: 555 MTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQ 614
M G + D +Y L+ L D A+ R+M+ G+ D Y +I+ + KLG
Sbjct: 583 MVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGN 642
Query: 615 LEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNS 674
++ A ++ +M+ + P+V++Y +L+ F G +++A+ D M GL PNAV Y +
Sbjct: 643 MQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCT 702
Query: 675 LIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKK- 733
+I Y K G L EA + ++ PD + ++D + V +A IF KK
Sbjct: 703 IIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGC 762
Query: 734 --------------------------------------GDANEFTYAMMLIMYKRNGRFE 755
G N+ TY +M+ + G E
Sbjct: 763 ASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLE 822
Query: 756 EATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLG 815
A + QM+ + L+ +++Y ++L Y GR ++ F + + A I+PD + +
Sbjct: 823 AAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVII 882
Query: 816 AVLMKCGL 823
+K G+
Sbjct: 883 NAFLKEGM 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 121/477 (25%), Positives = 225/477 (47%), Gaps = 16/477 (3%)
Query: 323 TYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKM 382
T ++L++ Y ++ EA QM P TVTFNT+IH +++ +E +LI +M
Sbjct: 152 TLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRM 211
Query: 383 EELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMV 442
C PD TY ++ K I +A KM++ +E D+V Y T++ A + V
Sbjct: 212 VARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNV 271
Query: 443 CEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSE------ 496
+A L +EMD G+ + T ++L R G W L DM
Sbjct: 272 NDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGR------WSDASRLLSDMIERKINPNV 325
Query: 497 -GYSANIDGYGERGHVLEAERAFI-CCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDS 554
+SA ID + + G ++EAE+ + + + ++ ++ + M D+A ++F+
Sbjct: 326 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 385
Query: 555 MTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQ 614
M S P+ +YN+LI+ A R+M + GLV + + Y +I + G
Sbjct: 386 MISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGD 445
Query: 615 LEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNS 674
+MA++++K M+ V PD++ Y +L++ G +++A F+ ++ + + P+ YN
Sbjct: 446 CDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNI 505
Query: 675 LIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG 734
+I+ K G +++ + + L P+V MI + + + +A+ +F MK+ G
Sbjct: 506 MIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDG 565
Query: 735 D-ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFK 790
N TY ++ R+G + + K+MR G + D + + V+ + DGR +
Sbjct: 566 TLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLH-DGRLE 621
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (446), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 163/666 (24%), Positives = 279/666 (41%), Gaps = 106/666 (15%)
Query: 177 ALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEM---------------- 220
A + F+W + + +V Y I+ L AR + S+ EM
Sbjct: 125 AFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFDVLWST 184
Query: 221 ---SVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKA 277
V G ++ + LID+ G+ EEA+ +M + P + ++ + K
Sbjct: 185 RNVCVPGFGVFDALFSVLIDL----GMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKL 240
Query: 278 GEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQL 337
G+ + FFK MIG + +TYN +ID K G +
Sbjct: 241 GKTDDVKRFFKD---------------MIG-------AGARPTVFTYNIMIDCMCKEGDV 278
Query: 338 KEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNIL 397
+ A F +M G+VP TVT+N+MI +G +L + ++M+++ C PD TYN L
Sbjct: 279 EAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNAL 338
Query: 398 IFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGL 457
I K K+ + ++ +MK L+P++VSY TL+ A+ M+ +A + +M GL
Sbjct: 339 INCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGL 398
Query: 458 EIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEG-------YSANIDGYGERGH 510
+EYT ++L + G L + F L +M G Y+A IDG +
Sbjct: 399 VPNEYTYTSLIDANCKIGNLSDA------FRLGNEMLQVGVEWNVVTYTALIDGLCDAER 452
Query: 511 VLEAERAFICCQEGKKLTVLV------FNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDK 564
+ EAE F GK T V +N ++ + +N D+A L + + G PD
Sbjct: 453 MKEAEELF-----GKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDL 507
Query: 565 CSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKD 624
Y + I L + AK + +M+E G+ ++ + Y ++ +Y K G + +
Sbjct: 508 LLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDE 567
Query: 625 MIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMES-AGLPPNAVIYNSLIKLYTKVG 683
M ++E VV + VLI+ V +A YF+ + + GL NA I+ +
Sbjct: 568 MKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTA--------- 618
Query: 684 YLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFT-YA 742
MID + + V A +FE M +KG + T Y
Sbjct: 619 --------------------------MIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYT 652
Query: 743 MMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802
++ + G EA + +M E G+ DLL+Y +++ + + + ++M+
Sbjct: 653 SLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGE 712
Query: 803 AIQPDD 808
I PD+
Sbjct: 713 GIHPDE 718
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 856 | ||||||
| 359477372 | 881 | PREDICTED: pentatricopeptide repeat-cont | 0.990 | 0.962 | 0.673 | 0.0 | |
| 255551975 | 875 | pentatricopeptide repeat-containing prot | 0.974 | 0.953 | 0.674 | 0.0 | |
| 297737146 | 862 | unnamed protein product [Vitis vinifera] | 0.970 | 0.964 | 0.670 | 0.0 | |
| 449457361 | 858 | PREDICTED: pentatricopeptide repeat-cont | 0.975 | 0.973 | 0.633 | 0.0 | |
| 449518091 | 859 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.973 | 0.969 | 0.632 | 0.0 | |
| 297835316 | 841 | pentatricopeptide repeat-containing prot | 0.963 | 0.980 | 0.626 | 0.0 | |
| 15228936 | 842 | pentatricopeptide repeat-containing prot | 0.963 | 0.979 | 0.624 | 0.0 | |
| 297790207 | 842 | pentatricopeptide repeat-containing prot | 0.962 | 0.978 | 0.613 | 0.0 | |
| 356574710 | 821 | PREDICTED: pentatricopeptide repeat-cont | 0.899 | 0.937 | 0.604 | 0.0 | |
| 356536609 | 787 | PREDICTED: pentatricopeptide repeat-cont | 0.843 | 0.917 | 0.627 | 0.0 |
| >gi|359477372|ref|XP_002280003.2| PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1168 bits (3022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/868 (67%), Positives = 691/868 (79%), Gaps = 20/868 (2%)
Query: 1 MFVKLQ-LDTSCFYVLCSTKTSPSSNIGASASVSVS-SLEKKIETQTLLNNSNSERVKRL 58
MFVKL LDT+CF VL S + SP NIG SAS S KK Q + + N VKR
Sbjct: 1 MFVKLHCLDTNCFQVL-SARGSP--NIGDSASSSDKVEFIKKRRVQKVPESPNGG-VKRF 56
Query: 59 SKVHNHSKFDKPNGVVHEHELKKQSFEQKPHREQSKNTWVDVRIGNERRTDVI----SAV 114
S+V + D+ +G + L + F + P R+Q +++ D R N+R V A
Sbjct: 57 SRVCRQTHHDRRSGASQKPGLNQHGFVKDPERKQRRHSGGDGRTINKRGGVVGFRSGDAN 116
Query: 115 CVNGEVQTKCSTKWARYGGCIPSMLQALDTVKDLDEALKPWAENLSNKERSIILKEQSSW 174
+ +V T CSTKW YGGCIPS+L+AL+TVKDLDEAL PW E+LSNKERSIILKEQS W
Sbjct: 117 DLVEKVSTNCSTKWLSYGGCIPSILRALETVKDLDEALSPWEESLSNKERSIILKEQSCW 176
Query: 175 ERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGT 234
ERALEIFEW K++ C+ELNVIHYNIMLR LGKARKW +V+SLWDEM +GI P+NSTYGT
Sbjct: 177 ERALEIFEWLKKKGCYELNVIHYNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYGT 236
Query: 235 LIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRE 294
LIDV SKGGL EEA+ WL+RMN+ GMEPDEVTMG+VVQ YKKAGEF+KAE+FFK WS +
Sbjct: 237 LIDVYSKGGLTEEALHWLDRMNKQGMEPDEVTMGVVVQTYKKAGEFKKAEQFFKNWSLGK 296
Query: 295 SLRHGEDTK--TMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGI 352
+L+ T T VE+ S + LSSYTYNTLIDTYGKAGQL+EAS+TFA MLREGI
Sbjct: 297 TLKDEGKTSEPTATSAVESASQPHVCLSSYTYNTLIDTYGKAGQLREASDTFAWMLREGI 356
Query: 353 VPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASR 412
+P TVTFNTMIHI GN+ QL E SL++KMEEL CPPDTRTYNILI LHAK++ I A+
Sbjct: 357 IPNTVTFNTMIHICGNHGQLEEAASLMQKMEELRCPPDTRTYNILISLHAKHNNIDRAAS 416
Query: 413 YFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYI 472
YF KMKEA LEPD+VSYRTLLYA+SIR +V EAE L+SEMD GLEIDE+TQSALTRMYI
Sbjct: 417 YFKKMKEARLEPDLVSYRTLLYAFSIRHLVGEAEILVSEMDERGLEIDEFTQSALTRMYI 476
Query: 473 EAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVF 532
EAGML+KSWLWFRRFHL G+MSSE YSANID YGERGH+LEAE+AF+CC+E +KL+VL F
Sbjct: 477 EAGMLKKSWLWFRRFHLEGNMSSECYSANIDAYGERGHILEAEKAFLCCKESRKLSVLEF 536
Query: 533 NVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQE 592
NVM+KAYG+ Y+KAC L DSM +HG +PDK SYNSLIQILA ADLPH AK YL KMQE
Sbjct: 537 NVMIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHKAKFYLMKMQE 596
Query: 593 AGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQ 652
LVSDCIPYCAVISS++KLGQLEMAE ++K+MI +NV+PDVVVYG+LINAFADVGNV++
Sbjct: 597 TQLVSDCIPYCAVISSFIKLGQLEMAEGLFKEMIGYNVQPDVVVYGILINAFADVGNVRE 656
Query: 653 AQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMID 712
A +Y +A+ +AGLP NAVIYNSLIKLYTKVGYL+EAQE YK+L++ E PDVY+SNCMID
Sbjct: 657 AVNYVNALRNAGLPMNAVIYNSLIKLYTKVGYLEEAQEAYKMLQASEVGPDVYSSNCMID 716
Query: 713 LYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISD 772
LYSERSMV+QAEEIFE +K+KGDANEF++AMML MYKR G+ +EA +I ++MRE GL++D
Sbjct: 717 LYSERSMVKQAEEIFESLKRKGDANEFSFAMMLCMYKRIGKLKEAFQIVQKMRELGLVTD 776
Query: 773 LLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG--------LE 824
LLSYNNVLG YA+DGRFKD +GTFK+M+ AAIQPDD TFKSLG VL+KCG LE
Sbjct: 777 LLSYNNVLGFYAMDGRFKDAVGTFKEMIEAAIQPDDCTFKSLGVVLVKCGIPKQAVGKLE 836
Query: 825 LTRKKNAQSGLQAWMSTLSSVIEECDDD 852
+TRKK+ QSGLQAW S L SV+E D D
Sbjct: 837 MTRKKDPQSGLQAWASILFSVVEVDDTD 864
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551975|ref|XP_002517032.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223543667|gb|EEF45195.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1162 bits (3007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/862 (67%), Positives = 688/862 (79%), Gaps = 28/862 (3%)
Query: 5 LQLDTSCFYVLCSTKTSPSSNIGASAS----VSVSSLE-----KKIETQTLLNNSNSERV 55
QLDT+ F L ST+T P N+G S S +SVS LE KK+ + LL SN V
Sbjct: 6 FQLDTNHFLTLNSTRTLP--NVGVSVSTNTGISVSPLENIEPVKKLREKRLLETSNGT-V 62
Query: 56 KRLSKVHNHSKFDKPNGVVHEHELKKQSFEQKPHREQSKNTWVDVRIGNERRTDVISAVC 115
K+ +H S+ DK N H++ KQ+ EQ P R+Q K + + N + V
Sbjct: 63 KKFGVIHKQSR-DKANDSAHKNGFGKQALEQNPDRQQRKMGRNNYKTMNNKSLGV-KFHR 120
Query: 116 VNG-----EVQTKCSTKWARYGGCIPSMLQALDTVKDLDEALKPWAENLSNKERSIILKE 170
+NG +V+TKCSTKW YGG IPS+L+AL+T+K+LDEALKPW + LSNKERSIILKE
Sbjct: 121 INGNDSVDKVRTKCSTKWVNYGGSIPSILEALETIKNLDEALKPWEDTLSNKERSIILKE 180
Query: 171 QSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINS 230
Q SWERA+EIFEWFK + C+ELNVIHYNIM+R LGKA++W Y++ L +EMS K I PINS
Sbjct: 181 QCSWERAMEIFEWFKSRGCYELNVIHYNIMIRILGKAKQWRYLECLCNEMSFKRISPINS 240
Query: 231 TYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKW 290
TYGTLIDV SKGGL+E+A+ WLE+MN+ GMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKW
Sbjct: 241 TYGTLIDVYSKGGLREKALDWLEKMNKQGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKW 300
Query: 291 SSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLRE 350
S RE+LRH K + +VEN ++ SLSS+TYNT+IDTYGKAGQ+KEAS+ FA+MLR+
Sbjct: 301 SLREALRHKVTGKASV-RVENERQMDVSLSSHTYNTMIDTYGKAGQIKEASDIFAEMLRK 359
Query: 351 GIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMA 410
I+PTTVTFNTMIHI GN QL EV L++KMEEL CPPDTRTYNILIF+HAK++ I+MA
Sbjct: 360 RILPTTVTFNTMIHICGNQGQLEEVALLMQKMEELRCPPDTRTYNILIFIHAKHNDINMA 419
Query: 411 SRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRM 470
+ YF +MK+ L+PD+VSYRTLLYA+SIR MV +AE L+SEMD G+EIDEYTQSALTRM
Sbjct: 420 ASYFKRMKKDQLQPDLVSYRTLLYAFSIRHMVNDAENLVSEMDEKGIEIDEYTQSALTRM 479
Query: 471 YIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVL 530
YIEAGMLEKSWLWF RFHLAG+MSSE YSANID YGERGHV EA R F C E KLTVL
Sbjct: 480 YIEAGMLEKSWLWFWRFHLAGNMSSECYSANIDAYGERGHVKEAARVFACRLEQNKLTVL 539
Query: 531 VFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKM 590
FNVM+KAYG G+NY+KAC+LFDSM SHG VPDKCSY+SL+QILA ADLP AK YL+KM
Sbjct: 540 EFNVMIKAYGFGKNYEKACDLFDSMESHGVVPDKCSYSSLVQILASADLPDKAKHYLKKM 599
Query: 591 QEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNV 650
QEAGLVSDC+ YCAVISS++KLG+LEMAEEVYK+M+ F+V+PD++VYGVLINAFAD G V
Sbjct: 600 QEAGLVSDCVQYCAVISSFVKLGKLEMAEEVYKEMVGFDVKPDIIVYGVLINAFADSGCV 659
Query: 651 KQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCM 710
K+A SY DAM+ AGLP N VIYNSLIKLYTKVGYL+EAQETYKLL+S + P+ Y+SNCM
Sbjct: 660 KEAISYIDAMKGAGLPGNTVIYNSLIKLYTKVGYLREAQETYKLLQSSDVGPETYSSNCM 719
Query: 711 IDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770
IDLYSE+SMV+ AEEIFE MK+KGDANEFTYAMML MYKR G FE+A +IAKQMRE GL+
Sbjct: 720 IDLYSEQSMVKPAEEIFESMKRKGDANEFTYAMMLCMYKRLGWFEQAIQIAKQMRELGLL 779
Query: 771 SDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG-------- 822
+ LLSYNNVLGLYA+DGRFK+ +GTFK+MV A IQPDD TFKSLG VL+KCG
Sbjct: 780 TYLLSYNNVLGLYALDGRFKEAVGTFKEMVGAGIQPDDCTFKSLGIVLVKCGISKQAVGK 839
Query: 823 LELTRKKNAQSGLQAWMSTLSS 844
LE T KK+ SGLQ W++ LS+
Sbjct: 840 LEATTKKDRHSGLQTWLAALSA 861
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297737146|emb|CBI26347.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1160 bits (3002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/866 (67%), Positives = 685/866 (79%), Gaps = 35/866 (4%)
Query: 1 MFVKLQ-LDTSCFYVLCSTKTSPSSNIGASASVSVS-SLEKKIETQTLLNNSNSERVKRL 58
MFVKL LDT+CF VL S + SP NIG SAS S KK Q + + N VKR
Sbjct: 1 MFVKLHCLDTNCFQVL-SARGSP--NIGDSASSSDKVEFIKKRRVQKVPESPNGG-VKRF 56
Query: 59 SKVHNHSKFDKPNGVVHEHELKKQSFEQKPHREQSKNTWVDVRIGNERRTDVI----SAV 114
S+V + D+ +G + L + F + P R+Q +++ D R N+R V A
Sbjct: 57 SRVCRQTHHDRRSGASQKPGLNQHGFVKDPERKQRRHSGGDGRTINKRGGVVGFRSGDAN 116
Query: 115 CVNGEVQTKCSTKWARYGGCIPSMLQALDTVKDLDEALKPWAENLSNKERSIILKEQSSW 174
+ +V T CSTKW YGGCIPS+L+AL+TVKDLDEAL PW E+LSNKERSIILKEQS W
Sbjct: 117 DLVEKVSTNCSTKWLSYGGCIPSILRALETVKDLDEALSPWEESLSNKERSIILKEQSCW 176
Query: 175 ERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGT 234
ERALEIFEW K++ C+ELNVIHYNIMLR LGKARKW +V+SLWDEM +GI P+NSTYGT
Sbjct: 177 ERALEIFEWLKKKGCYELNVIHYNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYGT 236
Query: 235 LIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRE 294
LIDV SKGGL EEA+ WL+RMN+ GMEPDEVTMG+VVQ YKKAGEF+KAE+FFK WS
Sbjct: 237 LIDVYSKGGLTEEALHWLDRMNKQGMEPDEVTMGVVVQTYKKAGEFKKAEQFFKNWS--- 293
Query: 295 SLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVP 354
+E+ S + LSSYTYNTLIDTYGKAGQL+EAS+TFA MLREGI+P
Sbjct: 294 --------------LESASQPHVCLSSYTYNTLIDTYGKAGQLREASDTFAWMLREGIIP 339
Query: 355 TTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYF 414
TVTFNTMIHI GN+ QL E SL++KMEEL CPPDTRTYNILI LHAK++ I A+ YF
Sbjct: 340 NTVTFNTMIHICGNHGQLEEAASLMQKMEELRCPPDTRTYNILISLHAKHNNIDRAASYF 399
Query: 415 WKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEA 474
KMKEA LEPD+VSYRTLLYA+SIR +V EAE L+SEMD GLEIDE+TQSALTRMYIEA
Sbjct: 400 KKMKEARLEPDLVSYRTLLYAFSIRHLVGEAEILVSEMDERGLEIDEFTQSALTRMYIEA 459
Query: 475 GMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNV 534
GML+KSWLWFRRFHL G+MSSE YSANID YGERGH+LEAE+AF+CC+E +KL+VL FNV
Sbjct: 460 GMLKKSWLWFRRFHLEGNMSSECYSANIDAYGERGHILEAEKAFLCCKESRKLSVLEFNV 519
Query: 535 MVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAG 594
M+KAYG+ Y+KAC L DSM +HG +PDK SYNSLIQILA ADLPH AK YL KMQE
Sbjct: 520 MIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHKAKFYLMKMQETQ 579
Query: 595 LVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQ 654
LVSDCIPYCAVISS++KLGQLEMAE ++K+MI +NV+PDVVVYG+LINAFADVGNV++A
Sbjct: 580 LVSDCIPYCAVISSFIKLGQLEMAEGLFKEMIGYNVQPDVVVYGILINAFADVGNVREAV 639
Query: 655 SYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLY 714
+Y +A+ +AGLP NAVIYNSLIKLYTKVGYL+EAQE YK+L++ E PDVY+SNCMIDLY
Sbjct: 640 NYVNALRNAGLPMNAVIYNSLIKLYTKVGYLEEAQEAYKMLQASEVGPDVYSSNCMIDLY 699
Query: 715 SERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLL 774
SERSMV+QAEEIFE +K+KGDANEF++AMML MYKR G+ +EA +I ++MRE GL++DLL
Sbjct: 700 SERSMVKQAEEIFESLKRKGDANEFSFAMMLCMYKRIGKLKEAFQIVQKMRELGLVTDLL 759
Query: 775 SYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG--------LELT 826
SYNNVLG YA+DGRFKD +GTFK+M+ AAIQPDD TFKSLG VL+KCG LE+T
Sbjct: 760 SYNNVLGFYAMDGRFKDAVGTFKEMIEAAIQPDDCTFKSLGVVLVKCGIPKQAVGKLEMT 819
Query: 827 RKKNAQSGLQAWMSTLSSVIEECDDD 852
RKK+ QSGLQAW S L SV+E D D
Sbjct: 820 RKKDPQSGLQAWASILFSVVEVDDTD 845
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457361|ref|XP_004146417.1| PREDICTED: pentatricopeptide repeat-containing protein At3g23020-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1072 bits (2773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/851 (63%), Positives = 651/851 (76%), Gaps = 16/851 (1%)
Query: 7 LDTSCFYVLCSTKTSPSSNIGASASVSVSSLEKKIETQTLLNNSNSERVKRLSKVHNHSK 66
LDT C + L ST SP S ++ + KK + N + L KV K
Sbjct: 4 LDTPCVHGLGSTLRSPIVGASVSPPDNLVPISKKPNDWWIPECPN----RVLKKVGGVQK 59
Query: 67 FDKPNGVVHEHELKKQSFEQKPHREQSKNTWVDVRIGNERRTDVISAVCVNGEVQTKCST 126
NG + K++ + + Q +N + R+ ++ V +V KCST
Sbjct: 60 STNDNGGRRQEIRFKKANKMEERETQKRNRHLGHRVVVKKDAGGDGNGSVE-KVHAKCST 118
Query: 127 KWARYGGCIPSMLQALDTVKDLDEALKPWAENLSNKERSIILKEQSSWERALEIFEWFKR 186
KW YGGCIP++LQALD + DLDEALKPW + L+NKERSIILKEQ+SWERALEIFEWF
Sbjct: 119 KWLSYGGCIPAILQALDEISDLDEALKPWKDKLNNKERSIILKEQTSWERALEIFEWFNM 178
Query: 187 QECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKE 246
C+E+NVIHYNI+L TLGKA+KW V+SLW EM+ KGI PINSTYGTLIDV SKGG KE
Sbjct: 179 AGCYEVNVIHYNIVLGTLGKAQKWRLVESLWVEMNKKGIKPINSTYGTLIDVYSKGGFKE 238
Query: 247 EAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMI 306
EA+ WLERMNE GMEPDEVTMGIVVQ+YKKAGEFQKAE FFKKWSS S+++ K
Sbjct: 239 EALVWLERMNEQGMEPDEVTMGIVVQLYKKAGEFQKAESFFKKWSSCNSMKYEITNKKKA 298
Query: 307 G--KVENGSHV-NGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMI 363
KVE+ H + SLS+YTYNTLIDTYGKAGQLKEAS TF ML+EG+ PTTVTFNTMI
Sbjct: 299 ASVKVESSLHPPHVSLSTYTYNTLIDTYGKAGQLKEASTTFENMLKEGVSPTTVTFNTMI 358
Query: 364 HIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLE 423
HI GN+ QL EV L++KMEEL CPPDTRTYNILI L+AK+D I +AS YF +M+EA L+
Sbjct: 359 HICGNHGQLKEVTFLMQKMEELQCPPDTRTYNILISLYAKHDNIDLASNYFAEMEEAGLQ 418
Query: 424 PDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLW 483
PDIVSYRTLLYAYSIR MV EAE+LI+EMD GLEIDE+TQSALTRMYI+AGMLE+SW W
Sbjct: 419 PDIVSYRTLLYAYSIRHMVAEAEKLITEMDERGLEIDEFTQSALTRMYIDAGMLEESWSW 478
Query: 484 FRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGR 543
F RFHLAG MSSE YSANID YGERG +LEAER F+ CQE KK TVL FNVM+KAYG+ +
Sbjct: 479 FWRFHLAGHMSSECYSANIDAYGERGFILEAERVFVSCQEEKKCTVLEFNVMIKAYGVVK 538
Query: 544 NYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYC 603
+Y KA +FDSM S+G VPDKCSY+SLIQIL GAD+P MA YL+KMQ AGLVSDCIPY
Sbjct: 539 DYAKAQKIFDSMKSNGVVPDKCSYSSLIQILTGADMPAMALAYLKKMQSAGLVSDCIPYS 598
Query: 604 AVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESA 663
VISS+ KLG LEMA+++Y++M++ V+PD++VYGVLINAFAD G+VK+A +Y +AM+
Sbjct: 599 VVISSFSKLGHLEMADKLYREMVKHGVQPDIIVYGVLINAFADAGSVKEAINYVNAMKRD 658
Query: 664 GLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQA 723
GL N VIYNSLIKLYTKVGYLKEA E YK+L + P +Y+SNCMIDLYSERSMV++A
Sbjct: 659 GLSGNTVIYNSLIKLYTKVGYLKEAHEAYKMLEQTDDGPAIYSSNCMIDLYSERSMVKEA 718
Query: 724 EEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783
EEIFE +KKKG+ANEFT+AMML MYK+ GR +EA +A+QM+E GL+SDLLS+NN++ LY
Sbjct: 719 EEIFESLKKKGEANEFTFAMMLCMYKKIGRIQEAICVARQMKEQGLLSDLLSFNNMISLY 778
Query: 784 AVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG--------LELTRKKNAQSGL 835
A+DGRFK+ + F++M+ AA+QPD+ T+KSLG VL+KCG LE+T KK+AQSGL
Sbjct: 779 AMDGRFKEAVSIFQEMMKAAVQPDECTYKSLGVVLLKCGVSKQAVSKLEVTAKKDAQSGL 838
Query: 836 QAWMSTLSSVI 846
QAW+S LSSV+
Sbjct: 839 QAWVSVLSSVV 849
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449518091|ref|XP_004166077.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g23020-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1071 bits (2769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/854 (63%), Positives = 652/854 (76%), Gaps = 21/854 (2%)
Query: 7 LDTSCFYVLCSTKTSPSSNIGASASVSVSSLEKKIETQTLLNNSNSERVKRLSKVHNHSK 66
LDT C + L ST SP S ++ + KK + N + L KV K
Sbjct: 4 LDTPCVHGLGSTLRSPIVGASVSPPDNLVPISKKPNDWWIPECPN----RVLKKVGGVQK 59
Query: 67 FDKPNGVVHEHELKKQSFEQKPHREQSKNTWVDVRIGNERRTDVISAVCVNGEVQ---TK 123
NG + K++ + + Q +N + +G+ + NG V+ K
Sbjct: 60 STNDNGGRRQEIRFKKANKMEERETQKRNRHL---VGHRVVGKKDAGGDGNGSVEKVHAK 116
Query: 124 CSTKWARYGGCIPSMLQALDTVKDLDEALKPWAENLSNKERSIILKEQSSWERALEIFEW 183
CSTKW YGGCIP++LQALD + DLDEALKPW + L+NKERSIILKEQ+SWERALEIFEW
Sbjct: 117 CSTKWLSYGGCIPAILQALDEISDLDEALKPWKDKLNNKERSIILKEQTSWERALEIFEW 176
Query: 184 FKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGG 243
F C+E+NVIHYNI+L TLGKA+KW V+SLW EM+ KGI PINSTYGTLIDV SKGG
Sbjct: 177 FNMAGCYEVNVIHYNIVLGTLGKAQKWRLVESLWVEMNKKGIKPINSTYGTLIDVYSKGG 236
Query: 244 LKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTK 303
KEEA+ WLERMNE GMEPDEVTMGIVVQ+YKKAGEFQKAE FFKKWSS S+++ K
Sbjct: 237 FKEEALVWLERMNEQGMEPDEVTMGIVVQLYKKAGEFQKAESFFKKWSSCNSMKYEITNK 296
Query: 304 TMIG--KVENGSHV-NGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFN 360
KVE+ H + SLS+YTYNTLIDTYGKAGQLKEAS TF ML+EG+ PTTVTFN
Sbjct: 297 KKAASVKVESSLHPPHVSLSTYTYNTLIDTYGKAGQLKEASTTFENMLKEGVSPTTVTFN 356
Query: 361 TMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEA 420
TMIHI GN+ QL EV L++KMEEL CPPDTRTYNILI L+AK+D I +AS YF +M+EA
Sbjct: 357 TMIHICGNHGQLKEVTFLMQKMEELQCPPDTRTYNILISLYAKHDNIDLASNYFAEMEEA 416
Query: 421 NLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKS 480
L+PDIVSYRTLLYAYSIR MV EAE+LI+EMD GLEIDE+TQSALTRMYI+AGMLE+S
Sbjct: 417 GLQPDIVSYRTLLYAYSIRHMVAEAEKLITEMDERGLEIDEFTQSALTRMYIDAGMLEES 476
Query: 481 WLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYG 540
W WF RFHLAG MSSE YSANID YGERG +LEAER F+ CQE KK TVL FNVM+KAYG
Sbjct: 477 WSWFWRFHLAGHMSSECYSANIDAYGERGFILEAERVFVSCQEEKKCTVLEFNVMIKAYG 536
Query: 541 MGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCI 600
+ ++Y KA +FDSM S+G VPDKCSY+SLIQIL GAD+P MA YL+KMQ AGLVSDCI
Sbjct: 537 VVKDYAKAQKIFDSMKSNGVVPDKCSYSSLIQILTGADMPAMALAYLKKMQSAGLVSDCI 596
Query: 601 PYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAM 660
PY VISS+ KLG LEMA+++Y++M++ V+PD++VYGVLINAFAD G+VK+A +Y +AM
Sbjct: 597 PYSVVISSFSKLGHLEMADKLYREMVKHGVQPDIIVYGVLINAFADAGSVKEAINYVNAM 656
Query: 661 ESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMV 720
+ GL N VIYNSLIKLYTKVGYLKEA E YK+L + P +Y+SNCMIDLYSERSMV
Sbjct: 657 KRDGLSGNTVIYNSLIKLYTKVGYLKEAHEAYKMLEQTDDGPAIYSSNCMIDLYSERSMV 716
Query: 721 RQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVL 780
++AEEIFE +KKKG+ANEFT+AMML MYK+ GR +EA +A+QM+E GL+SDLLS+NN++
Sbjct: 717 KEAEEIFESLKKKGEANEFTFAMMLCMYKKIGRIQEAICVARQMKEQGLLSDLLSFNNMI 776
Query: 781 GLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG--------LELTRKKNAQ 832
LYA+DGRFK+ + F++M+ AA+QPD+ T+KSLG VL+KCG LE+T KK+AQ
Sbjct: 777 SLYAMDGRFKEAVSIFQEMMKAAVQPDECTYKSLGVVLLKCGVSKQAVSKLEVTXKKDAQ 836
Query: 833 SGLQAWMSTLSSVI 846
SGLQAW+S LSSV+
Sbjct: 837 SGLQAWVSVLSSVV 850
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297835316|ref|XP_002885540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331380|gb|EFH61799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1063 bits (2749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/867 (62%), Positives = 653/867 (75%), Gaps = 42/867 (4%)
Query: 1 MFVKLQLDTSCFYVLCSTKTSPSSNIGASASVSVSSLEKKIETQTLLNNSNSERVKRLSK 60
M + L+LD S +VLCSTKT P S + SV KK++ + S++ + S
Sbjct: 1 MLLNLRLDGSSLHVLCSTKTLPISPLDKFPSV------KKVKQNYVPGTHESDKGPQRST 54
Query: 61 VHNHSKFDKPNGVV-HEHELKKQSFEQKPHREQSKNTWVDVRIGNERRTDVISAVCVNG- 118
+ D+ G V HE K P + + R D
Sbjct: 55 RNG----DRGCGTVAHEVVAGKNLLFVNPGNGSVGKSGFSYGFVDRRSKDGGFGGNGMVG 110
Query: 119 EVQTKCSTKWARYGGCIPSMLQALDTVKDLDEALKPWAENLSNKERSIILKEQSSWERAL 178
+V TKCSTK YGGCIP++L+ALD ++D+++AL PW+E LSNKER+IILKEQ+ WERA+
Sbjct: 111 KVHTKCSTKRLSYGGCIPAILEALDCIEDVEDALSPWSEKLSNKERTIILKEQTRWERAV 170
Query: 179 EIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDV 238
EIFEWFK + C+ELNVIHYNIMLR LGKA KW YVQSLWDEM KGI PINSTYGTLIDV
Sbjct: 171 EIFEWFKSKGCYELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGIKPINSTYGTLIDV 230
Query: 239 CSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRH 298
SKGGLK A+CWL +M++ GM+PDEVT GIV+QMYKKA EFQKAEEFFKKWS E+
Sbjct: 231 YSKGGLKVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEEFFKKWSCDEN--- 287
Query: 299 GEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVT 358
+ SHV LSSYTYNT+IDTYGK+GQ+KEASETF +ML EGIVPTTVT
Sbjct: 288 -----------KADSHV--CLSSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVT 334
Query: 359 FNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMK 418
FNTMIH+YGNN Q EV SL+K M+ HC PDTRTYNILI LH KN+ I A YF +MK
Sbjct: 335 FNTMIHVYGNNGQFGEVTSLMKTMK-FHCAPDTRTYNILISLHTKNNDIERAGTYFKEMK 393
Query: 419 EANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLE 478
A L+PD VSYRTLLYA+SIR MV EAEELI+EMD +EIDEYTQSALTRMYIEA MLE
Sbjct: 394 GAGLKPDPVSYRTLLYAFSIRHMVKEAEELIAEMDDNDVEIDEYTQSALTRMYIEAEMLE 453
Query: 479 KSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKA 538
KSW WF+RFH+AG+MSSEGYSANID YGERG++ EAER FICCQE K TVL +NVM+KA
Sbjct: 454 KSWSWFKRFHVAGNMSSEGYSANIDAYGERGYLSEAERVFICCQEVNKRTVLEYNVMIKA 513
Query: 539 YGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSD 598
YG+ ++ +KAC LF+SM S+G PDKC+YN+L+QILA AD+P AK YL KM+E G VSD
Sbjct: 514 YGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPDKAKCYLEKMRETGYVSD 573
Query: 599 CIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFD 658
CIPYCAVISS++KLGQL MAEEVYK+M+ +N+EPDVVVYGVLINAFAD GNV+QA SY +
Sbjct: 574 CIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVE 633
Query: 659 AMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETY-KLLRSLEAS--PDVYTSNCMIDLYS 715
AM+ AG+P N+VIYNSLIKLYTKVGYL EA+ Y KLLRS + PDVYTSNCMI+LYS
Sbjct: 634 AMKEAGIPENSVIYNSLIKLYTKVGYLDEAEAIYRKLLRSCNETQYPDVYTSNCMINLYS 693
Query: 716 ERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLS 775
+RSMVR+AE IFE MK++ +ANEFT+AMML MYK+NGRFEEAT+IAKQMRE +++D LS
Sbjct: 694 QRSMVRKAEAIFESMKQRREANEFTFAMMLCMYKKNGRFEEATQIAKQMREMRILTDPLS 753
Query: 776 YNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCGL--------ELTR 827
YN+VLGLYA+DGRFK+ + TFK+MV++ IQPDD TFKSLG +L+K G+ E R
Sbjct: 754 YNSVLGLYALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILIKLGMSKKAVRKIEEIR 813
Query: 828 KKNAQSGLQAWMSTLSSV--IEECDDD 852
KK + GL+ W+STLSS+ IE+C+D+
Sbjct: 814 KKEIKRGLELWISTLSSLVGIEDCEDE 840
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228936|ref|NP_188942.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75273922|sp|Q9LS88.1|PP250_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g23020 gi|9294191|dbj|BAB02093.1| unnamed protein product [Arabidopsis thaliana] gi|332643185|gb|AEE76706.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1058 bits (2736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/868 (62%), Positives = 656/868 (75%), Gaps = 43/868 (4%)
Query: 1 MFVKLQLDTSCFYVLCSTKTSP-SSNIGASASVSVSSLEKKIETQTLLNNSNSERVKRLS 59
M + L+LD S +VLCSTKT P SS + S KK++ + S++ + S
Sbjct: 1 MLLNLRLDGSSLHVLCSTKTLPISSPLDKFPSF------KKLKQNYVPGTHESDKGPQRS 54
Query: 60 KVHNHSKFDKPNGVV-HEHELKKQSFEQKPHRE-QSKNTWVDVRIGNERRTDVISAVCVN 117
+ D+ G V HE K P K+ +D + + +
Sbjct: 55 TRNG----DRGCGTVAHEVVAGKNLLLVNPSNGCVGKSGIIDGFVDKRSKDARFGGNGLV 110
Query: 118 GEVQTKCSTKWARYGGCIPSMLQALDTVKDLDEALKPWAENLSNKERSIILKEQSSWERA 177
EV TKCSTK YGGCIP++L+ALD+++D+++AL PWAE LSNKER+IILKEQ WERA
Sbjct: 111 SEVHTKCSTKRLSYGGCIPAILEALDSIEDVEDALSPWAERLSNKERTIILKEQIHWERA 170
Query: 178 LEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLID 237
+EIFEWFK + C+ELNVIHYNIMLR LGKA KW YVQSLWDEM KGI PINSTYGTLID
Sbjct: 171 VEIFEWFKSKGCYELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGIKPINSTYGTLID 230
Query: 238 VCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLR 297
V SKGGLK A+CWL +M++ GM+PDEVT GIV+QMYKKA EFQKAEEFFKKWS E+
Sbjct: 231 VYSKGGLKVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEEFFKKWSCDEN-- 288
Query: 298 HGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTV 357
+ SHV LSSYTYNT+IDTYGK+GQ+KEASETF +ML EGIVPTTV
Sbjct: 289 ------------KADSHV--CLSSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTV 334
Query: 358 TFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKM 417
TFNTMIHIYGNN QL EV SL+K M+ LHC PDTRTYNILI LH KN+ I A YF +M
Sbjct: 335 TFNTMIHIYGNNGQLGEVTSLMKTMK-LHCAPDTRTYNILISLHTKNNDIERAGAYFKEM 393
Query: 418 KEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGML 477
K+ L+PD VSYRTLLYA+SIR MV EAE LI+EMD +EIDEYTQSALTRMY+EA ML
Sbjct: 394 KDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLIAEMDDDNVEIDEYTQSALTRMYVEAEML 453
Query: 478 EKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVK 537
EKSW WF+RFH+AG+MSSEGYSANID YGERG++ EAER FICCQE K TV+ +NVM+K
Sbjct: 454 EKSWSWFKRFHVAGNMSSEGYSANIDAYGERGYLSEAERVFICCQEVNKRTVIEYNVMIK 513
Query: 538 AYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVS 597
AYG+ ++ +KAC LF+SM S+G PDKC+YN+L+QILA AD+PH + YL KM+E G VS
Sbjct: 514 AYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPHKGRCYLEKMRETGYVS 573
Query: 598 DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYF 657
DCIPYCAVISS++KLGQL MAEEVYK+M+ +N+EPDVVVYGVLINAFAD GNV+QA SY
Sbjct: 574 DCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYV 633
Query: 658 DAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETY-KLLRSLEAS--PDVYTSNCMIDLY 714
+AM+ AG+P N+VIYNSLIKLYTKVGYL EA+ Y KLL+S + PDVYTSNCMI+LY
Sbjct: 634 EAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTSNCMINLY 693
Query: 715 SERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLL 774
SERSMVR+AE IF+ MK++G+ANEFT+AMML MYK+NGRFEEAT+IAKQMRE +++D L
Sbjct: 694 SERSMVRKAEAIFDSMKQRGEANEFTFAMMLCMYKKNGRFEEATQIAKQMREMKILTDPL 753
Query: 775 SYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCGL--------ELT 826
SYN+VLGL+A+DGRFK+ + TFK+MV++ IQPDD TFKSLG +LMK G+ E
Sbjct: 754 SYNSVLGLFALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILMKLGMSKKAVRKIEEI 813
Query: 827 RKKNAQSGLQAWMSTLSSV--IEECDDD 852
RKK + GL+ W+STLSS+ I +C D+
Sbjct: 814 RKKEIKRGLELWISTLSSLVGIGDCVDE 841
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297790207|ref|XP_002863007.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297308804|gb|EFH39266.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1026 bits (2653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/869 (61%), Positives = 648/869 (74%), Gaps = 45/869 (5%)
Query: 1 MFVKLQLDTSCFYVLCSTKTSPSSNIGASASVSVSSLEKKIETQTLLNNSNSERVKRLSK 60
M + L+LD S +VLCSTKT P S + SV KK++ + SE+ + S
Sbjct: 1 MLLNLRLDGSSLHVLCSTKTLPISPLDKFPSV------KKVKQNYVPGTHESEKGPQRST 54
Query: 61 VHNHSKFDKPNGVVHEHEL---KKQSFEQKPHREQSKNTWVDVRIGNERRTDVISAVCVN 117
+ D+ G V HE+ K F + K+ + D + + +
Sbjct: 55 RNG----DRGCGTV-AHEVVAGKNLLFVNPGNGSVGKSGFSDGFVDRRSKDGGFGGNGMV 109
Query: 118 GEVQTKCSTKWARYGGCIPSMLQALDTVKDLDEALKPWAENLSNK-ERSIILKEQSSWER 176
G+V TKCSTK YGGCIP++L+ALD ++D+++AL PW+E L++ ER+IILK +
Sbjct: 110 GKVHTKCSTKRLSYGGCIPAILEALDCIEDVEDALIPWSEKLTDPMERTIILKGADAVGE 169
Query: 177 ALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLI 236
+ FEWFK + C+ELNVIHYNIMLR LGKA KW YVQSLWDEM KGI PINSTYGTLI
Sbjct: 170 SGGDFEWFKSKGCYELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGIKPINSTYGTLI 229
Query: 237 DVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESL 296
DV SKGGLK A+CWL +M++ GM+PDEVT GIV+QMYKKA EFQKAEEFFKKWS E+
Sbjct: 230 DVYSKGGLKVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEEFFKKWSCDEN- 288
Query: 297 RHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTT 356
+ SHV LSSYTYNT+IDTYGK+GQ+KEASETF +ML EGIVPTT
Sbjct: 289 -------------KADSHV--CLSSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTT 333
Query: 357 VTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWK 416
VTFNTMIH+YGNN Q EV SL+K M+ HC PDTRTYNILI LH KN+ I A YF +
Sbjct: 334 VTFNTMIHVYGNNGQFGEVTSLMKTMK-FHCAPDTRTYNILISLHTKNNDIERAGTYFKE 392
Query: 417 MKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGM 476
MK A L+PD VSYRTLLYA+SIRRMV EAEELI+EMD +EIDEYTQSALTRMYIEA M
Sbjct: 393 MKGAGLKPDPVSYRTLLYAFSIRRMVKEAEELIAEMDDNDVEIDEYTQSALTRMYIEAEM 452
Query: 477 LEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMV 536
LEKSW WFRR H+AG+MSSEGYSANID YGERG++ EAER FICCQE K TVL +NVM+
Sbjct: 453 LEKSWSWFRRVHVAGNMSSEGYSANIDAYGERGYLSEAERVFICCQEVNKRTVLEYNVMI 512
Query: 537 KAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLV 596
KAYG+ ++ +KAC LF+SM S+G PDKC+YN+L+QILA AD+P AK YL KM+E G V
Sbjct: 513 KAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPDKAKCYLEKMRETGYV 572
Query: 597 SDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSY 656
SDCIPYCAVISS++KLGQL MAEEVYK+M+ +N+EPDVVVYGVLINAFAD GNV+QA SY
Sbjct: 573 SDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSY 632
Query: 657 FDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETY-KLLRSLEAS--PDVYTSNCMIDL 713
+AM+ AG+P N+VIYNSLIKLYTKVGYL EA+ Y KLLRS + PDVYTS+CM +L
Sbjct: 633 VEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLRSCNETQYPDVYTSHCMNNL 692
Query: 714 YSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDL 773
SERSMVR+AE IFE MK++ +ANEFT+AMML MYK+NGRFEEAT+IAKQMRE +++D
Sbjct: 693 CSERSMVRKAEAIFESMKQRREANEFTFAMMLCMYKKNGRFEEATQIAKQMREMRILTDP 752
Query: 774 LSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCGL--------EL 825
LSYN+VLGLYA+DGRFK+ + TFK+MV++ IQPDD TFKSLG +L+K G+ E
Sbjct: 753 LSYNSVLGLYALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILIKLGMSKKAVRKIEE 812
Query: 826 TRKKNAQSGLQAWMSTLSSV--IEECDDD 852
RKK + GL+ W+STLSS+ IE+C+D+
Sbjct: 813 IRKKEIKRGLELWISTLSSLVGIEDCEDE 841
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574710|ref|XP_003555488.1| PREDICTED: pentatricopeptide repeat-containing protein At3g23020-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 973 bits (2515), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/805 (60%), Positives = 604/805 (75%), Gaps = 35/805 (4%)
Query: 70 PNGVVHEHELKKQSFEQKPHREQSKNTWVDVRIGNERRTDVISAVCVNGEVQ-----TKC 124
PNG L + +Q+ H ++ RR + CV + + TKC
Sbjct: 32 PNGRKQRVPLHNGAVKQETHSKK-------------RRPEKNPEECVPRKTKPEKSHTKC 78
Query: 125 STKWARYGGCIPSMLQALDTVKDLDEALKPWAENLSNKERSIILKEQSSWERALEIFEWF 184
S K YGGCI ++L+ALD V D+DEAL PW + LSNKERSIILKEQ W+RALEIFEWF
Sbjct: 79 SMKRVSYGGCITAILEALDVVLDVDEALGPWEDRLSNKERSIILKEQLRWDRALEIFEWF 138
Query: 185 KRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGL 244
++ HELNVIHYNIMLR+LG+AR+W V+SLW+EM+ +GI STYGTLIDV SKGG
Sbjct: 139 NKKG-HELNVIHYNIMLRSLGRARQWRRVESLWNEMNARGIAATCSTYGTLIDVYSKGGR 197
Query: 245 KEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHG----E 300
+++A+ WL M G++PDEVTM IVVQ+YKKAGEFQK EEFF+KWSS + LR
Sbjct: 198 RDDALSWLNMMLGQGVQPDEVTMVIVVQLYKKAGEFQKGEEFFRKWSSGKPLRSKSKPLR 257
Query: 301 DTKTMIGKVENGSHV---NGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTV 357
++ E V N S S+TYNTLIDTYGKAGQLKEAS+TF +ML++G+ PTTV
Sbjct: 258 SNDNVVASPELDERVACANASFGSHTYNTLIDTYGKAGQLKEASQTFVEMLKQGVAPTTV 317
Query: 358 TFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKM 417
TFNTMI+I GN+ +L EV L++KMEEL C P+TRTYNILI LHAK+D I MA++YF M
Sbjct: 318 TFNTMINICGNHGRLEEVSLLVRKMEELRCSPNTRTYNILISLHAKHDDIGMATKYFETM 377
Query: 418 KEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGML 477
KEA LEPD+VSYRTLLYAYSIR+M+ EAEEL+ EMD LEID+YTQSALTRMYIEAGML
Sbjct: 378 KEACLEPDLVSYRTLLYAYSIRKMIREAEELVKEMDKRRLEIDQYTQSALTRMYIEAGML 437
Query: 478 EKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVK 537
++S LWF RFH+AG+M+SE Y+ANID YGE GH LEAE+ FI CQ+ K L+VL FNVM+K
Sbjct: 438 DRSLLWFLRFHVAGNMTSECYAANIDAYGEHGHTLEAEKVFIWCQKQKNLSVLEFNVMIK 497
Query: 538 AYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVS 597
AYG+G+ Y+KAC LFDSM HG V D+CSY SLI ILA AD PH+AK YL+KMQEAGLVS
Sbjct: 498 AYGIGKCYEKACQLFDSMEKHGVVADRCSYTSLIHILASADQPHIAKPYLKKMQEAGLVS 557
Query: 598 DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYF 657
DCIPYCAVISS+ KLGQLEM E++Y++MIR V+PDV+V+G+LIN F+D G VK+A Y
Sbjct: 558 DCIPYCAVISSFAKLGQLEMTEDIYREMIRHGVQPDVIVHGILINVFSDAGRVKEAIGYV 617
Query: 658 DAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSER 717
D M+ AGLP N VIYNSLIKLY K+ L++A+E YKLL+ + P VY+SNCMIDLY +R
Sbjct: 618 DEMKKAGLPGNTVIYNSLIKLYAKIDNLEKAKEAYKLLQLSDEGPGVYSSNCMIDLYVKR 677
Query: 718 SMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYN 777
SMV QA+EIFE +KK G ANEFT+AMML +YK+ RF+EA +IAKQ+R+ G ++D LSYN
Sbjct: 678 SMVDQAKEIFETLKKNGAANEFTFAMMLCLYKKIERFDEAIQIAKQIRKLGPLTD-LSYN 736
Query: 778 NVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG--------LELTRKK 829
NVL LYA+ GR K+ I TFK+MV A+IQ +D + +SLG +L++ G LE KK
Sbjct: 737 NVLDLYAIAGRPKEAIETFKEMVRASIQVNDCSLRSLGNLLLRYGVSRLAVHKLEALVKK 796
Query: 830 NAQSGLQAWMSTLSSVIEECDDDYN 854
+A +GLQAWMS L+SV+E D D++
Sbjct: 797 DASNGLQAWMSALASVLEVDDYDHD 821
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536609|ref|XP_003536829.1| PREDICTED: pentatricopeptide repeat-containing protein At3g23020-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 970 bits (2508), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/738 (62%), Positives = 571/738 (77%), Gaps = 16/738 (2%)
Query: 119 EVQTKCSTKWARYGGCIPSMLQALDTVKDLDEALKPWAE-NLSNKERSIILKEQSSWERA 177
+V + CSTKW + G IP++L+AL+T DLD AL+ W E LS++E S+ILK Q SW+RA
Sbjct: 50 KVHSTCSTKWVSHCGSIPAVLRALNTTHDLDNALRQWEEGTLSDREISVILKAQVSWQRA 109
Query: 178 LEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLID 237
L+IFEWFK + ++LNVIHYNIML TLG+ARKW V+SLW EM+ KG+ P+NSTYGTLID
Sbjct: 110 LQIFEWFKNKGRYDLNVIHYNIMLCTLGRARKWDLVESLWTEMNAKGVAPVNSTYGTLID 169
Query: 238 VCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLR 297
SKGGLKEEA+ WL+RM GMEPDEVTMGIVV +YK+AGEFQKA+EFF++W R
Sbjct: 170 AYSKGGLKEEALAWLQRMQSQGMEPDEVTMGIVVLLYKRAGEFQKAQEFFRRWMRGAPFR 229
Query: 298 HGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTV 357
G D K + SH N LSS+TY TLIDTYGK GQ A ETFA+++R+G TV
Sbjct: 230 LGVDDKVV-------SHTNVCLSSHTYATLIDTYGKGGQFHAACETFARIIRQGRALNTV 282
Query: 358 TFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKM 417
T NTMIH+YGN +L + L +KM E C PDT TYNILI L+ KN+K+ +A++YF +M
Sbjct: 283 TLNTMIHLYGNCGRLRQACLLFQKMGEFRCVPDTWTYNILISLNIKNNKVKLAAKYFARM 342
Query: 418 KEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGML 477
K+A LEPD+VSYRTLLYAYS R+MV EAEELI EMD LEIDE+TQSALTRMY+E+GML
Sbjct: 343 KKAFLEPDVVSYRTLLYAYSTRKMVREAEELIREMDERDLEIDEFTQSALTRMYVESGML 402
Query: 478 EKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVK 537
E+SWLWFRRFHLAG++SS+ YSANID YGE G+ L AE+ FICC+E KKLTVL FNVM+K
Sbjct: 403 EQSWLWFRRFHLAGNISSDCYSANIDAYGEWGYTLAAEKVFICCKEKKKLTVLEFNVMIK 462
Query: 538 AYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVS 597
AYG+G+ YDKAC LFDSM G V DKCSY+SLI ILA AD PH+AK YL+KMQEAGLVS
Sbjct: 463 AYGIGKCYDKACQLFDSMKKFGVVADKCSYSSLIHILASADKPHLAKSYLKKMQEAGLVS 522
Query: 598 DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYF 657
DC+PYC VISS+ KLGQ EMAEE+YK+M+ + V+PDV++YGV INAFAD G+VK+A +Y
Sbjct: 523 DCVPYCVVISSFTKLGQFEMAEELYKEMLGYAVQPDVIIYGVFINAFADAGSVKEAINYV 582
Query: 658 DAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSER 717
+ M AGLP N IYNSLIKLYTKVGYLKEAQETYKL++ + P +++SNCMIDLY+ER
Sbjct: 583 NEMRKAGLPGNPAIYNSLIKLYTKVGYLKEAQETYKLIQLSDEGPSLFSSNCMIDLYTER 642
Query: 718 SMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYN 777
MV QA+EIFE + K ANEF+YAMML MYK+ GR +EA +IA QMR G ++D+LSYN
Sbjct: 643 LMVEQAKEIFESLMKNEVANEFSYAMMLCMYKKIGRLDEAIQIATQMRRLGFLTDILSYN 702
Query: 778 NVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG--------LELTRKK 829
NVLGLY++D R ++ TFK+M+ + +QPDDFTF++L +L+ CG LE+ K+
Sbjct: 703 NVLGLYSMDRRLREATETFKEMIKSGVQPDDFTFRALANILLNCGVSKQAVGRLEVMVKR 762
Query: 830 NAQSGLQAWMSTLSSVIE 847
+A GLQAWM LS E
Sbjct: 763 DAPHGLQAWMLALSCAFE 780
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 856 | ||||||
| TAIR|locus:2094573 | 842 | AT3G23020 [Arabidopsis thalian | 0.627 | 0.637 | 0.688 | 8.4e-305 | |
| TAIR|locus:2027744 | 991 | AT1G73710 "AT1G73710" [Arabido | 0.724 | 0.625 | 0.379 | 7.5e-105 | |
| TAIR|locus:2044430 | 822 | AT2G18940 [Arabidopsis thalian | 0.643 | 0.670 | 0.253 | 1.8e-47 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.570 | 0.595 | 0.265 | 6.6e-47 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.545 | 0.742 | 0.252 | 1.1e-42 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.539 | 0.752 | 0.255 | 5.3e-42 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.547 | 0.744 | 0.252 | 1.2e-40 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.543 | 0.738 | 0.243 | 4.1e-40 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.570 | 0.669 | 0.247 | 6.8e-40 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.710 | 0.698 | 0.245 | 1.4e-39 |
| TAIR|locus:2094573 AT3G23020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1962 (695.7 bits), Expect = 8.4e-305, Sum P(2) = 8.4e-305
Identities = 381/553 (68%), Positives = 457/553 (82%)
Query: 313 SHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQL 372
SHV LSSYTYNT+IDTYGK+GQ+KEASETF +ML EGIVPTTVTFNTMIHIYGNN QL
Sbjct: 292 SHV--CLSSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQL 349
Query: 373 AEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTL 432
EV SL+K M+ LHC PDTRTYNILI LH KN+ I A YF +MK+ L+PD VSYRTL
Sbjct: 350 GEVTSLMKTMK-LHCAPDTRTYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTL 408
Query: 433 LYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGD 492
LYA+SIR MV EAE LI+EMD +EIDEYTQSALTRMY+EA MLEKSW WF+RFH+AG+
Sbjct: 409 LYAFSIRHMVEEAEGLIAEMDDDNVEIDEYTQSALTRMYVEAEMLEKSWSWFKRFHVAGN 468
Query: 493 MSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLF 552
MSSEGYSANID YGERG++ EAER FICCQE K TV+ +NVM+KAYG+ ++ +KAC LF
Sbjct: 469 MSSEGYSANIDAYGERGYLSEAERVFICCQEVNKRTVIEYNVMIKAYGISKSCEKACELF 528
Query: 553 DSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKL 612
+SM S+G PDKC+YN+L+QILA AD+PH + YL KM+E G VSDCIPYCAVISS++KL
Sbjct: 529 ESMMSYGVTPDKCTYNTLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAVISSFVKL 588
Query: 613 GQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIY 672
GQL MAEEVYK+M+ +N+EPDVVVYGVLINAFAD GNV+QA SY +AM+ AG+P N+VIY
Sbjct: 589 GQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPGNSVIY 648
Query: 673 NSLIKLYTKVGYLKEAQETY-KLLRSLEAS--PDVYTSNCMIDLYSERSMVRQAEEIFEI 729
NSLIKLYTKVGYL EA+ Y KLL+S + PDVYTSNCMI+LYSERSMVR+AE IF+
Sbjct: 649 NSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTSNCMINLYSERSMVRKAEAIFDS 708
Query: 730 MKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRF 789
MK++G+ANEFT+AMML MYK+NGRFEEAT+IAKQMRE +++D LSYN+VLGL+A+DGRF
Sbjct: 709 MKQRGEANEFTFAMMLCMYKKNGRFEEATQIAKQMREMKILTDPLSYNSVLGLFALDGRF 768
Query: 790 KDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCGL--------ELTRKKNAQSGLQAWMST 841
K+ + TFK+MV++ IQPDD TFKSLG +LMK G+ E RKK + GL+ W+ST
Sbjct: 769 KEAVETFKEMVSSGIQPDDSTFKSLGTILMKLGMSKKAVRKIEEIRKKEIKRGLELWIST 828
Query: 842 LSSV--IEECDDD 852
LSS+ I +C D+
Sbjct: 829 LSSLVGIGDCVDE 841
|
|
| TAIR|locus:2027744 AT1G73710 "AT1G73710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
Identities = 241/635 (37%), Positives = 366/635 (57%)
Query: 197 YNIMLRTLGKARKWSYVQSLW-DEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERM 255
Y +++ GKA LW M + P T T++ V G + A + +
Sbjct: 183 YGMLVDVYGKAGLVKEAL-LWIKHMGQRMHFPDEVTMATVVRVFKNSGEFDRADRFFKGW 241
Query: 256 NEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDT---KTM-IGKVEN 311
G ++ D + + + K G Q K++ S E + G K++ +
Sbjct: 242 CAGKVDLDLDS----IDDFPKNGSAQSPVNL-KQFLSMELFKVGARNPIEKSLHFASGSD 296
Query: 312 GSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQ 371
S L+S T+NTLID YGKAG+L +A+ F++ML+ G+ TVTFNTMIH G +
Sbjct: 297 SSPRKPRLTS-TFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGH 355
Query: 372 LAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRT 431
L+E +SL+KKMEE PDT+TYNIL+ LHA I A Y+ K+++ L PD V++R
Sbjct: 356 LSEAESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRA 415
Query: 432 LLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAG 491
+L+ R+MV E E +I+EMD + IDE++ + +MY+ G++ ++ F RF L
Sbjct: 416 VLHILCQRKMVAEVEAVIAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFERFQLDC 475
Query: 492 DMSSEGYSANIDGYGERGHVLEAERAFICCQE--GKKLTVLVFNVMVKAYGMGRNYDKAC 549
+SS +A ID Y E+G +EAE F + G++ VL +NVM+KAYG + ++KA
Sbjct: 476 VLSSTTLAAVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKAL 535
Query: 550 NLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSY 609
+LF M + G PD+C+YNSL Q+LAG DL A+R L +M ++G C Y A+I+SY
Sbjct: 536 SLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEMLDSGCKPGCKTYAAMIASY 595
Query: 610 MKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA 669
++LG L A ++Y+ M + V+P+ VVYG LIN FA+ G V++A YF ME G+ N
Sbjct: 596 VRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAIQYFRMMEEHGVQSNH 655
Query: 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEI 729
++ SLIK Y+KVG L+EA+ Y ++ E PDV SN M+ L ++ +V +AE IF
Sbjct: 656 IVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPDVAASNSMLSLCADLGIVSEAESIFNA 715
Query: 730 MKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRF 789
+++KG + ++A M+ +YK G +EA +A++MRESGL+SD S+N V+ YA DG+
Sbjct: 716 LREKGTCDVISFATMMYLYKGMGMLDEAIEVAEEMRESGLLSDCTSFNQVMACYAADGQL 775
Query: 790 KDVIGTFKDM-VNAAIQPDDFTFKSLGAVLMKCGL 823
+ F +M V + D TFK+L +L K G+
Sbjct: 776 SECCELFHEMLVERKLLLDWGTFKTLFTLLKKGGV 810
|
|
| TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 1.8e-47, P = 1.8e-47
Identities = 147/580 (25%), Positives = 259/580 (44%)
Query: 174 WERALEIFEWFKRQECHELNVIHYNIMLRTLGK-ARKWSYVQSLWDEMSVKGIVPINSTY 232
+E+A+++FE K ++ YN++L GK R W + + DEM KG+ T
Sbjct: 226 YEKAIDLFERMKEMGPSP-TLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTC 284
Query: 233 GTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSS 292
T++ C++ GL EA + + G EP VT ++Q++ KAG + +A K+
Sbjct: 285 STVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEE 344
Query: 293 R----ESLRHGE---------DTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKE 339
+S+ + E +K G +E + ++ TY T+ID YGKAG+ E
Sbjct: 345 NSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDE 404
Query: 340 ASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIF 399
A + F M G VP T T+N ++ + G + E+ ++ M+ C P+ T+N ++
Sbjct: 405 ALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLA 464
Query: 400 LHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEI 459
L +R F +MK EPD ++ TL+ AY +A ++ EM G
Sbjct: 465 LCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNA 524
Query: 460 DEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEG-------YSANIDGYGERGHVL 512
T +AL G W ++ DM S+G YS + Y + G+ L
Sbjct: 525 CVTTYNALLNALARKGD------WRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYL 578
Query: 513 EAERAFICCQEGKKL-TVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLI 571
ER +EG+ + ++ ++ A R + F HG PD +NS++
Sbjct: 579 GIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSML 638
Query: 572 QILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVE 631
I ++ A+ L ++E GL D + Y +++ Y++ G+ AEE+ K + + ++
Sbjct: 639 SIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLK 698
Query: 632 PDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQET 691
PD+V Y +I F G +++A M G+ P YN+ + YT +G E ++
Sbjct: 699 PDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDV 758
Query: 692 YKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMK 731
+ + + P+ T ++D Y +A + +K
Sbjct: 759 IECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIK 798
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 517 (187.1 bits), Expect = 6.6e-47, P = 6.6e-47
Identities = 132/498 (26%), Positives = 241/498 (48%)
Query: 323 TYNTLIDTYGKAGQ-LKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKK 381
TYN +++ +GK G + + +M +GI P T+NT+I E + ++
Sbjct: 245 TYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEE 304
Query: 382 MEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRM 441
M+ D TYN L+ ++ K+ + A + +M P IV+Y +L+ AY+ M
Sbjct: 305 MKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGM 364
Query: 442 VCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSE-GYSA 500
+ EA EL ++M G + D +T + L + AG +E + F AG + ++A
Sbjct: 365 LDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNA 424
Query: 501 NIDGYGERGHVLEAERAF----ICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMT 556
I YG RG E + F +C G ++ +N ++ +G + +F M
Sbjct: 425 FIKMYGNRGKFTEMMKIFDEINVC---GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK 481
Query: 557 SHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLE 616
G VP++ ++N+LI + A R+M +AG+ D Y V+++ + G E
Sbjct: 482 RAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWE 541
Query: 617 MAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLI 676
+E+V +M +P+ + Y L++A+A+ + S + + S + P AV+ +L+
Sbjct: 542 QSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLV 601
Query: 677 KLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA 736
+ +K L EA+ + L+ SPD+ T N M+ +Y R MV +A + + MK++G
Sbjct: 602 LVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFT 661
Query: 737 NEF-TYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGT 795
TY ++ M+ R+ F ++ I +++ G+ D++SYN V+ Y + R +D
Sbjct: 662 PSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRI 721
Query: 796 FKDMVNAAIQPDDFTFKS 813
F +M N+ I PD T+ +
Sbjct: 722 FSEMRNSGIVPDVITYNT 739
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 462 (167.7 bits), Expect = 1.1e-42, P = 1.1e-42
Identities = 119/471 (25%), Positives = 226/471 (47%)
Query: 323 TYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKM 382
T ++L++ Y ++ EA QM P TVTFNT+IH +++ +E +LI +M
Sbjct: 152 TLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRM 211
Query: 383 EELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMV 442
C PD TY ++ K I +A KM++ +E D+V Y T++ A + V
Sbjct: 212 VARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNV 271
Query: 443 CEAEELISEMDGGGLEIDEYTQSALTRMYIEAGML-EKSWLWFRRFHLAGDMSSEGYSAN 501
+A L +EMD G+ + T ++L R G + S L + + +SA
Sbjct: 272 NDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 331
Query: 502 IDGYGERGHVLEAERAFI-CCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGA 560
ID + + G ++EAE+ + + + ++ ++ + M D+A ++F+ M S
Sbjct: 332 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 391
Query: 561 VPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEE 620
P+ +YN+LI+ A R+M + GLV + + Y +I + G +MA++
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 451
Query: 621 VYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYT 680
++K M+ V PD++ Y +L++ G +++A F+ ++ + + P+ YN +I+
Sbjct: 452 IFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMC 511
Query: 681 KVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA-NEF 739
K G +++ + + L P+V MI + + + +A+ +F MK+ G N
Sbjct: 512 KAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSG 571
Query: 740 TYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFK 790
TY ++ R+G + + K+MR G + D + + V+ + DGR +
Sbjct: 572 TYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLH-DGRLE 621
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 453 (164.5 bits), Expect = 5.3e-42, P = 5.3e-42
Identities = 122/478 (25%), Positives = 218/478 (45%)
Query: 320 SSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLI 379
S T N+L++ + ++ EA QM+ G P TVTF T++H +++ +E +L+
Sbjct: 134 SIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALV 193
Query: 380 KKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIR 439
++M C PD TY +I K + +A KM++ +E D+V Y T++ +
Sbjct: 194 ERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKY 253
Query: 440 RMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYS 499
R V +A L +EMD G+ D +T S+L G W L DM +
Sbjct: 254 RHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGR------WSDASRLLSDMLERKIN 307
Query: 500 AN-------IDGYGERGHVLEAERAFI-CCQEGKKLTVLVFNVMVKAYGMGRNYDKACNL 551
N ID + + G ++EAE+ F Q ++ +N ++ + M D+A +
Sbjct: 308 PNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQI 367
Query: 552 FDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMK 611
F M S +PD +YN+LI A R M GLV + + Y +I + +
Sbjct: 368 FTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQ 427
Query: 612 LGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVI 671
+ A+ V+K M+ V P+++ Y L++ G +++A F+ ++ + + P+
Sbjct: 428 ASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYT 487
Query: 672 YNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMK 731
YN + + K G +++ + + L PDV N MI + ++ + +A +F MK
Sbjct: 488 YNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMK 547
Query: 732 KKGDANEF-TYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGR 788
+ G + TY ++ + R+G + + K+MR D +Y V + DGR
Sbjct: 548 EDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDMLH-DGR 604
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 452 (164.2 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 123/488 (25%), Positives = 226/488 (46%)
Query: 323 TYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKM 382
T ++L++ Y + ++ EA QM G P TVTFNT+IH +++ +E +LI +M
Sbjct: 153 TLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRM 212
Query: 383 EELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMV 442
C PD TY +++ K +A KM++ LEP ++ Y T++ + +
Sbjct: 213 VAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHM 272
Query: 443 CEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEG----- 497
+A L EM+ G+ + T S+L G W L DM
Sbjct: 273 DDALNLFKEMETKGIRPNVVTYSSLISCLCNYGR------WSDASRLLSDMIERKINPDV 326
Query: 498 --YSANIDGYGERGHVLEAERAFI-CCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDS 554
+SA ID + + G ++EAE+ + + +++ ++ ++ + M D+A +F+
Sbjct: 327 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 386
Query: 555 MTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQ 614
M S PD +YN+LI+ R+M + GLV + + Y +I + G
Sbjct: 387 MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD 446
Query: 615 LEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNS 674
+MA+E++K+M+ V P+++ Y L++ G +++A F+ ++ + + P YN
Sbjct: 447 CDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNI 506
Query: 675 LIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG 734
+I+ K G +++ + + L PDV N MI + + +A+ +F+ MK+ G
Sbjct: 507 MIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDG 566
Query: 735 DA-NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVI 793
N Y ++ R+G E + + K+MR G D + V + DGR
Sbjct: 567 TLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLH-DGRLDK-- 623
Query: 794 GTFKDMVN 801
+F DM++
Sbjct: 624 -SFLDMLS 630
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 448 (162.8 bits), Expect = 4.1e-40, P = 4.1e-40
Identities = 114/469 (24%), Positives = 226/469 (48%)
Query: 323 TYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKM 382
T N+L++ + ++ +A QM+ G P + TFNT+IH +++ +E +L+ +M
Sbjct: 153 TLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRM 212
Query: 383 EELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMV 442
C PD TY I++ K I +A KM++ +EP +V Y T++ A + V
Sbjct: 213 VVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNV 272
Query: 443 CEAEELISEMDGGGLEIDEYTQSALTRMYIEAGML-EKSWLWFRRFHLAGDMSSEGYSAN 501
+A L +EMD G+ + T ++L R G + S L + + +SA
Sbjct: 273 NDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 332
Query: 502 IDGYGERGHVLEAERAFI-CCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGA 560
ID + + G ++EAE+ + + + ++ ++ + M D+A ++F+ M S
Sbjct: 333 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 392
Query: 561 VPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEE 620
P+ +YN+LI+ A R+M + GLV + + Y +I + + + + A+
Sbjct: 393 FPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQI 452
Query: 621 VYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYT 680
V+K M+ V PD++ Y +L++ + G V+ A F+ ++ + + P+ YN +I+
Sbjct: 453 VFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMC 512
Query: 681 KVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEF- 739
K G +++ + + L P+V T M+ + + + +A+ +F MK++G +
Sbjct: 513 KAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSG 572
Query: 740 TYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGR 788
TY ++ + R+G + + ++MR + D + V + DGR
Sbjct: 573 TYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVTNMLH-DGR 620
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 449 (163.1 bits), Expect = 6.8e-40, Sum P(2) = 6.8e-40
Identities = 123/497 (24%), Positives = 232/497 (46%)
Query: 319 LSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSL 378
++ YT N +++ K G++++ +Q+ +G+ P VT+NT+I Y + + E L
Sbjct: 233 INVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFEL 292
Query: 379 IKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSI 438
+ M P TYN +I K+ K A F +M + L PD +YR+LL
Sbjct: 293 MNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACK 352
Query: 439 RRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEG- 497
+ V E E++ S+M + D S++ ++ +G L+K+ ++F AG +
Sbjct: 353 KGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVI 412
Query: 498 YSANIDGYGERGHVLEAERAFI-CCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMT 556
Y+ I GY +G + A Q+G + V+ +N ++ + +A LF+ MT
Sbjct: 413 YTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMT 472
Query: 557 SHGAVPDKCSYNSLIQILAGADLPHM--AKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQ 614
PD SY I I L ++ A +KM+E + D + Y ++ + K+G
Sbjct: 473 ERALFPD--SYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGD 530
Query: 615 LEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNS 674
++ A+E++ DM+ + P + Y +L+NA G++ +A +D M S + P +I NS
Sbjct: 531 IDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNS 590
Query: 675 LIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMI-DLYSERSMVRQAEEIFEIMKKK 733
+IK Y + G + + + + S PD + N +I E +M + + ++ +++
Sbjct: 591 MIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQ 650
Query: 734 GDA--NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKD 791
G + FTY +L + R + +EA + ++M E G+ D +Y ++ + +
Sbjct: 651 GGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTE 710
Query: 792 VIGTFKDMVNAAIQPDD 808
+M+ PDD
Sbjct: 711 AFRIHDEMLQRGFSPDD 727
|
|
| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 453 (164.5 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 158/643 (24%), Positives = 285/643 (44%)
Query: 197 YNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMN 256
Y ++ + +L+ +M G P + TLI +K G + A+ L+ M
Sbjct: 171 YTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMK 230
Query: 257 EGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKT-MIG-------- 307
++ D V + + + K G+ A +FF + + L+ E T T MIG
Sbjct: 231 SSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEAN-GLKPDEVTYTSMIGVLCKANRL 289
Query: 308 --KVENGSHVNGSLS---SYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTM 362
VE H+ + +Y YNT+I YG AG+ EA + +G +P+ + +N +
Sbjct: 290 DEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCI 349
Query: 363 IHIYGNNDQLAEVDSLIKKMEELH--CPPDTRTYNILIFLHAKNDKISMASRYFWKMKEA 420
+ ++ +VD +K EE+ P+ TYNILI + + K+ A M++A
Sbjct: 350 LTCLR---KMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKA 406
Query: 421 NLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKS 480
L P++ + ++ + + EA + EMD DE T +L + G ++ +
Sbjct: 407 GLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDA 466
Query: 481 WLWFRRFHLAGDMSSEG--YSA---NIDGYG--ERGHVLEAERAFICCQEGKKLTVLVFN 533
+ + + L D + Y++ N +G E GH + + C +L +
Sbjct: 467 YKVYEKM-LDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMD 525
Query: 534 VMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEA 593
M KA G +K +F+ + + VPD SY+ LI L A + M+E
Sbjct: 526 CMFKA---GEP-EKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQ 581
Query: 594 GLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQA 653
G V D Y VI + K G++ A ++ ++M EP VV YG +I+ A + + +A
Sbjct: 582 GCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEA 641
Query: 654 QSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDL 713
F+ +S + N VIY+SLI + KVG + EA + L +P++YT N ++D
Sbjct: 642 YMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDA 701
Query: 714 YSERSMVRQAEEIFEIMKK-KGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISD 772
+ + +A F+ MK+ K N+ TY +++ + +F +A ++M++ G+
Sbjct: 702 LVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPS 761
Query: 773 LLSYNNVLGLYAVDGRFKDVIGTF-KDMVNAAIQPDDFTFKSL 814
+SY ++ A G + F + N + PD + ++
Sbjct: 762 TISYTTMISGLAKAGNIAEAGALFDRFKANGGV-PDSACYNAM 803
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LS88 | PP250_ARATH | No assigned EC number | 0.6244 | 0.9637 | 0.9798 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 856 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-26 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-20 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-19 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 9e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-26
Identities = 95/398 (23%), Positives = 168/398 (42%), Gaps = 38/398 (9%)
Query: 389 PDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEEL 448
P T+N+L+ + A + I A R ++EA L+ D Y TL+ + V E+
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 449 ISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGER 508
EM G+E + +T + A IDG
Sbjct: 495 FHEMVNAGVEANVHT----------------------------------FGALIDGCARA 520
Query: 509 GHVLEAERAF-ICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMT--SHGAVPDKC 565
G V +A A+ I + K +VFN ++ A G D+A ++ M +H PD
Sbjct: 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI 580
Query: 566 SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDM 625
+ +L++ A A AK + + E + Y ++S + G + A +Y DM
Sbjct: 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640
Query: 626 IRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYL 685
+ V+PD V + L++ G++ +A G+ V Y+SL+ +
Sbjct: 641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700
Query: 686 KEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG-DANEFTYAMM 744
K+A E Y+ ++S++ P V T N +I E + + +A E+ MK+ G N TY+++
Sbjct: 701 KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760
Query: 745 LIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGL 782
L+ +R + + Q +E G+ +L+ + GL
Sbjct: 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 94.6 bits (235), Expect = 7e-20
Identities = 121/559 (21%), Positives = 207/559 (37%), Gaps = 142/559 (25%)
Query: 230 STYGTLIDVCSKGGLKE----EAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEE 285
STY L++ C LK +AV W + G EPD+ M V+ M+ K G A
Sbjct: 124 STYDALVEACI--ALKSIRCVKAVYWH--VESSGFEPDQYMMNRVLLMHVKCGMLIDARR 179
Query: 286 FFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFA 345
F + R + ++ T+I AG +EA F
Sbjct: 180 LFDEMPER--------------------------NLASWGTIIGGLVDAGNYREAFALFR 213
Query: 346 QMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHC-------PPDTRTYNILI 398
+M +G TF M+ + + + ++LHC DT LI
Sbjct: 214 EMWEDGSDAEPRTFVVML-------RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266
Query: 399 FLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLE 458
+++K I A F M E V++ ++L Y++ EA L EM G+
Sbjct: 267 DMYSKCGDIEDARCVFDGMPEKT----TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322
Query: 459 IDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAF 518
ID++T S + R++ +LE H +A
Sbjct: 323 IDQFTFSIMIRIFSRLALLE-------------------------------HAKQAHAGL 351
Query: 519 ICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGAD 578
I + G L ++ +V Y + A N+FD M
Sbjct: 352 I--RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM----------------------- 386
Query: 579 LPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYG 638
P + I + A+I+ Y G+ A E+++ MI V P+ V +
Sbjct: 387 -PR---------------KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL 430
Query: 639 VLINAFADVGNVKQAQSYFDAM-ESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697
+++A G +Q F +M E+ + P A+ Y +I+L + G L EA Y ++R
Sbjct: 431 AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA---YAMIRR 487
Query: 698 LEASPDVYTSNCMIDLYSERSMVRQ-------AEEIFEIMKKKGDANEFTYAMMLIMYKR 750
+P T N L + + + AE+++ + +K + Y ++L +Y
Sbjct: 488 ---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN----NYVVLLNLYNS 540
Query: 751 NGRFEEATRIAKQMRESGL 769
+GR EA ++ + ++ GL
Sbjct: 541 SGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 3e-19
Identities = 145/694 (20%), Positives = 263/694 (37%), Gaps = 182/694 (26%)
Query: 235 LIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQM--YKKAGEFQKAEEFFKKWS- 291
L +CS G L E+A+ LE M E + DE + ++ +K+A EE + S
Sbjct: 58 LRALCSHGQL-EQALKLLESMQELRVPVDEDAYVALFRLCEWKRA-----VEEGSRVCSR 111
Query: 292 -----SRESLRHGEDTKTMI---GKVENGSHVNGSLSS---YTYNTLIDTYGKAGQLKEA 340
+R G +M G++ + +V G + +++N L+ Y KAG EA
Sbjct: 112 ALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEA 171
Query: 341 SETFAQMLREGIVPTTVTFNTMI-----------------HI--YGNNDQLAEVDSLI-- 379
+ +ML G+ P TF ++ H+ +G + V++LI
Sbjct: 172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231
Query: 380 ----------KKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSY 429
+ + + D ++N +I + +N + F+ M+E +++PD+++
Sbjct: 232 YVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291
Query: 430 RTLLYAYSIRRMVCEA---EELISEMDG----GGLEIDEYTQSALTRMYIEAGMLEKSWL 482
+++ A CE E L EM G G +D ++L +MY+ G ++
Sbjct: 292 TSVISA-------CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344
Query: 483 WFRRFHLAGDMSSEGYSANIDGYGERG-------------------------HVLEAERA 517
F R +S ++A I GY + G VL A
Sbjct: 345 VFSRMETKDAVS---WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401
Query: 518 FICCQEGKKL-----------TVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDK-- 564
G KL V+V N +++ Y + DKA +F ++ P+K
Sbjct: 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI------PEKDV 455
Query: 565 CSYNSLIQILAGADLPHM---AKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEV 621
S+ S+I AG L + A + R+M L + + A +S+ ++G L +E+
Sbjct: 456 ISWTSII---AGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEI 511
Query: 622 YKDMIR-----------------------------FNV-EPDVVVYGVLINAFADVGNVK 651
+ ++R FN E DVV + +L+ + G
Sbjct: 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGS 571
Query: 652 QAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETY-KLLRSLEASPDVYTSNCM 710
A F+ M +G+ P+ V + SL+ ++ G + + E + + +P++ C+
Sbjct: 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631
Query: 711 IDLYSERSMVRQAEEIFEIMKKKGDA-------------------------------NEF 739
+DL + +A M D N
Sbjct: 632 VDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV 691
Query: 740 TYAMMLI-MYKRNGRFEEATRIAKQMRESGLISD 772
Y ++L +Y G+++E R+ K MRE+GL D
Sbjct: 692 GYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 4e-16
Identities = 72/297 (24%), Positives = 139/297 (46%), Gaps = 48/297 (16%)
Query: 561 VPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEE 620
P ++N L+ + A + A R LR +QEAGL +DC Y +IS+ K G+++ E
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493
Query: 621 VYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLI---- 676
V+ +M+ VE +V +G LI+ A G V +A + M S + P+ V++N+LI
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553
Query: 677 ---------------------------------KLYTKVGYLKEAQETYKLLR--SLEAS 701
K G + A+E Y+++ +++ +
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613
Query: 702 PDVYT---SNCMIDLYSERSMVRQAEEIFEIMKKKGDA-NEFTYAMMLIMYKRNGRFEEA 757
P+VYT ++C S++ A I++ MKKKG +E ++ ++ + G ++A
Sbjct: 614 PEVYTIAVNSC-----SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668
Query: 758 TRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSL 814
I + R+ G+ +SY++++G + +K + ++D+ + ++P T +L
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 6e-14
Identities = 72/279 (25%), Positives = 125/279 (44%), Gaps = 24/279 (8%)
Query: 548 ACNLFDSMTSHGAVPDK--CSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAV 605
A LFD M P++ S+ ++I L A A R+M E G SD P V
Sbjct: 177 ARRLFDEM------PERNLASWGTIIGGLVDAGNYREAFALFREMWEDG--SDAEPRTFV 228
Query: 606 --ISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESA 663
+ + LG ++++ +++ V D V LI+ ++ G+++ A+ FD M
Sbjct: 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK 288
Query: 664 GLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQA 723
V +NS++ Y GY +EA Y +R S D +T + MI ++S +++ A
Sbjct: 289 ----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344
Query: 724 EEIFEIMKKKGDANEFTYAMMLI-MYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGL 782
++ + + G + L+ +Y + GR E+A + +M LIS +N ++
Sbjct: 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS----WNALIAG 400
Query: 783 YAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKC 821
Y GR + F+ M+ + P+ TF AVL C
Sbjct: 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFL---AVLSAC 436
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 8e-13
Identities = 68/294 (23%), Positives = 114/294 (38%), Gaps = 47/294 (15%)
Query: 529 VLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLR 588
+ +NV+V Y +D+A L+ M G PD ++ +++ G
Sbjct: 152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG------------ 199
Query: 589 KMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVG 648
IP L EV+ ++RF E DV V LI + G
Sbjct: 200 -----------IP------------DLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236
Query: 649 NVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSN 708
+V A+ FD M + + +N++I Y + G E E + +R L PD+ T
Sbjct: 237 DVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292
Query: 709 CMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLI-MYKRNGRFEEATRIAKQMRES 767
+I R E+ + K G A + + LI MY G + EA ++ +M
Sbjct: 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-- 350
Query: 768 GLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKC 821
D +S+ ++ Y +G + T+ M + PD+ T + +VL C
Sbjct: 351 --TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT---IASVLSAC 399
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 2e-12
Identities = 70/315 (22%), Positives = 123/315 (39%), Gaps = 72/315 (22%)
Query: 175 ERALEIFEWFKRQECHELNVIH----YNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINS 230
+RA E++ Q HE N+ Y I + + + W + S++D+M KG+ P
Sbjct: 596 DRAKEVY-----QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650
Query: 231 TYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKW 290
+ L+DV G ++A L+ + G++ V+ ++ A ++KA E +
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY--- 707
Query: 291 SSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLRE 350
ED K++ + ++S T N LI + QL +A E ++M R
Sbjct: 708 ---------EDIKSI--------KLRPTVS--TMNALITALCEGNQLPKALEVLSEMKRL 748
Query: 351 GIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMA 410
G+ P T+T Y+IL+ + D +
Sbjct: 749 GLCPNTIT-----------------------------------YSILLVASERKDDADVG 773
Query: 411 SRYFWKMKEANLEPDIVSYRTLLYAYSIRRM--VCEAEELISEMDGGGLEI-DEYTQSAL 467
+ KE ++P++V R + +RR C E + D G +I +++T AL
Sbjct: 774 LDLLSQAKEDGIKPNLVMCRCIT-GLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832
Query: 468 T--RMYIEAGMLEKS 480
R I AG L
Sbjct: 833 MVYRETISAGTLPTM 847
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 8e-12
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 320 SSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIH 364
TYNTLID Y K G+++EA + F +M + GI P T++ +I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 1e-11
Identities = 86/423 (20%), Positives = 159/423 (37%), Gaps = 67/423 (15%)
Query: 226 VPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEE 285
P ST+ L+ VC+ + A+ L + E G++ D ++ K+G+ E
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493
Query: 286 FFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFA 345
F + + VE H T+ LID +AGQ+ +A +
Sbjct: 494 VFHEMVNAG--------------VEANVH--------TFGALIDGCARAGQVAKAFGAYG 531
Query: 346 QMLREGIVPTTVTFNTMIHIYGNN-------DQLAEVDSLIKKMEELHCPPDTRTYNILI 398
M + + P V FN +I G + D LAE+ K E PD T L+
Sbjct: 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM-----KAETHPIDPDHITVGALM 586
Query: 399 FLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLE 458
A ++ A + + E N++ Y + + S + A + +M G++
Sbjct: 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646
Query: 459 IDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAF 518
DE SAL + AG L+K+ F + D +G
Sbjct: 647 PDEVFFSALVDVAGHAGDLDKA------FEILQDARKQGI-------------------- 680
Query: 519 ICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGAD 578
KL + ++ ++ A +N+ KA L++ + S P + N+LI L +
Sbjct: 681 -------KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733
Query: 579 LPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYG 638
A L +M+ GL + I Y ++ + + ++ ++ ++P++V+
Sbjct: 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCR 793
Query: 639 VLI 641
+
Sbjct: 794 CIT 796
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 9e-11
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 602 YCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFAD 646
Y +I Y K G++E A +++ +M + ++P+V Y +LI+
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 1e-10
Identities = 48/241 (19%), Positives = 105/241 (43%), Gaps = 8/241 (3%)
Query: 545 YDKACNLFDSMTSHGAVP-DKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYC 603
+ +A LF+ + + +Y++L++ K ++ +G D
Sbjct: 103 HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162
Query: 604 AVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESA 663
V+ ++K G L A ++ +M E ++ +G +I D GN ++A + F M
Sbjct: 163 RVLLMHVKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDAGNYREAFALFREMWED 218
Query: 664 GLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQA 723
G + +++ +G + Q+ + + D + S +ID+YS+ + A
Sbjct: 219 GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278
Query: 724 EEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783
+F+ M +K + ML Y +G EEA + +MR+SG+ D +++ ++ ++
Sbjct: 279 RCVFDGMPEK---TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335
Query: 784 A 784
+
Sbjct: 336 S 336
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.6 bits (138), Expect = 2e-10
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 632 PDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIK 677
PDVV Y LI+ + G V++A F+ M+ G+ PN Y+ LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 4e-10
Identities = 49/273 (17%), Positives = 107/273 (39%), Gaps = 52/273 (19%)
Query: 603 CAVISSYMKLGQLEMAEEVYKDM-IRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAME 661
C+ I + G+ A E+++ + Y L+ A + +++ ++ + +E
Sbjct: 91 CSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVE 150
Query: 662 SAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD--VYTSNCMIDLYSERSM 719
S+G P+ + N ++ ++ K G L +A+ R + P+ + + +I +
Sbjct: 151 SSGFEPDQYMMNRVLLMHVKCGMLIDAR------RLFDEMPERNLASWGTIIGGLVDAGN 204
Query: 720 VRQAEEIFEIMKKKGDA------------------------------------NEFTYAM 743
R+A +F M + G + F
Sbjct: 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264
Query: 744 MLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAA 803
++ MY + G E+A + M E ++ +N++L YA+ G ++ + + +M ++
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKTTVA----WNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 804 IQPDDFTFKSLGAVLMKCG-LELTRKKNAQSGL 835
+ D FTF + + + LE K A +GL
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHA--KQAHAGL 351
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 5e-10
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 354 PTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILI 398
P VT+NT+I Y ++ E L +M++ P+ TY+ILI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-09
Identities = 97/513 (18%), Positives = 180/513 (35%), Gaps = 125/513 (24%)
Query: 193 NVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWL 252
+V N +++ W + ++ M K V ++ +I K GL ++A+
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV----SWTAMISGYEKNGLPDKALETY 377
Query: 253 ERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENG 312
M + + PDE+T+ V+ G+ D + ++
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDL--------------------DVGVKLHELA-- 415
Query: 313 SHVNGSLSSYTY--NTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNND 370
L SY N LI+ Y K + +A E F + + + +++ ++I N+
Sbjct: 416 --ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV----ISWTSIIAGLRLNN 469
Query: 371 QLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYR 430
R + LIF F +M L+P+ V+
Sbjct: 470 ---------------------RCFEALIF--------------FRQML-LTLKPNSVTLI 493
Query: 431 TLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLA 490
L A + + +E+ + + G+ D + +AL +Y+ G + +W F
Sbjct: 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF------ 547
Query: 491 GDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACN 550
E V+ +N+++ Y A
Sbjct: 548 -----------------------------NSHEKD---VVSWNILLTGYVAHGKGSMAVE 575
Query: 551 LFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEA-GLVSDCIPYCAVISSY 609
LF+ M G PD+ ++ SL+ + + + Y M+E + + Y V+
Sbjct: 576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635
Query: 610 MKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINA-----FADVGNVKQAQSYFDAMESAG 664
+ G+L E Y + + + PD V+G L+NA ++G + AQ F+
Sbjct: 636 GRAGKL---TEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELA-AQHIFE------ 685
Query: 665 LPPNAVIYNSLI-KLYTKVGYLKEAQETYKLLR 696
L PN+V Y L+ LY G E K +R
Sbjct: 686 LDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 1e-08
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 389 PDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAY 436
PD TYN LI + K K+ A + F +MK+ ++P++ +Y L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.5 bits (129), Expect = 9e-08
Identities = 36/231 (15%), Positives = 79/231 (34%), Gaps = 4/231 (1%)
Query: 531 VFNVMVKAYGMGRNYDKACNLFDSMTSH--GAVPDKCSYNSLIQILAGADLPHMAKRYLR 588
+ + + +A L + + + +L L + +
Sbjct: 25 LLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEK 84
Query: 589 KMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVG 648
++ L + + LG+ E A E+ + + + +PD+ + + A ++G
Sbjct: 85 ALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG 144
Query: 649 NVKQAQSYFDAMESAGLPPN--AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYT 706
+ ++A ++ N A +L L +G +EA E + L D
Sbjct: 145 DYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEA 204
Query: 707 SNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEA 757
+ LY + +A E +E + N + ++ GR+EEA
Sbjct: 205 LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEA 255
|
Length = 291 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-07
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 667 PNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMID 712
P+ V YN+LI Y K G ++EA + + ++ P+VYT + +ID
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-07
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 702 PDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG-DANEFTYAMML 745
PDV T N +ID Y ++ V +A ++F MKK+G N +TY++++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 5e-07
Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 23/160 (14%)
Query: 214 QSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQM 273
+ ++D M K V NS ++ + G EEA+C M + G+ D+ T I++++
Sbjct: 279 RCVFDGMPEKTTVAWNS----MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334
Query: 274 YKKAGEFQKAEEFFKKWSSRESLRHG-----------EDTKTMIGKVENGSHVNGSL--- 319
+ + + A K + +R G D + G++E+ +V +
Sbjct: 335 FSRLALLEHA-----KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK 389
Query: 320 SSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTF 359
+ ++N LI YG G+ +A E F +M+ EG+ P VTF
Sbjct: 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 1e-06
Identities = 63/316 (19%), Positives = 125/316 (39%), Gaps = 75/316 (23%)
Query: 197 YNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGG------------- 243
Y ++ T K+ K + ++ EM G+ T+G LID C++ G
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 244 ---LKEEAVCWLERMNEGG---------------------MEPDEVTMGIVVQMYKKAGE 279
+K + V + ++ G ++PD +T+G +++ AG+
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 280 FQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKE 339
+A+E ++ MI + ++ G+ YT +++ + G
Sbjct: 595 VDRAKEVYQ----------------MIHE----YNIKGTPEVYT--IAVNSCSQKGDWDF 632
Query: 340 ASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIF 399
A + M ++G+ P V F+ ++ + G+ L + +++ + T +Y+ L+
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692
Query: 400 L--HAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAE------ELISE 451
+AKN K A + +K L P + + L+ A +CE E++SE
Sbjct: 693 ACSNAKNWK--KALELYEDIKSIKLRPTVSTMNALITA------LCEGNQLPKALEVLSE 744
Query: 452 MDGGGLEIDEYTQSAL 467
M GL + T S L
Sbjct: 745 MKRLGLCPNTITYSIL 760
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 1e-06
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 193 NVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSK 241
+V+ YN ++ K K L++EM +GI P TY LID K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 322 YTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTT 356
TYNTLID KAG+++EA E F +M GI P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 190 HELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAV 249
HE +V+ +NI+L K S L++ M G+ P T+ +L+ CS+ G+ + +
Sbjct: 550 HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609
Query: 250 CWLERMNEG-GMEPDEVTMGIVVQMYKKAGEFQKAEEFFKK 289
+ M E + P+ VV + +AG+ +A F K
Sbjct: 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 1e-05
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 529 VLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQ 572
V+ +N ++ Y ++A LF+ M G P+ +Y+ LI
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-05
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 322 YTYNTLIDTYGKAGQLKEASETFAQMLREGIVP 354
TYN L+ KAG A +M G+ P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 322 YTYNTLIDTYGKAGQLKEASETFAQMLREGI 352
TYN+LI Y KAG+L+EA E F +M +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 602 YCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDV 634
Y +I K G++E A E++K+M +EPDV
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 8e-05
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 424 PDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMY 471
PD+V+Y TL+ Y + V EA +L +EM G++ + YT S L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 1e-04
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 231 TYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKK 276
TY TLID K G EEA+ M + G++P+ T I++ K
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 1e-04
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 322 YTYNTLIDTYGKAGQLKEASETFAQM 347
TYNTLID +AG++ EA E +M
Sbjct: 8 VTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 602 YCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFD-AM 660
+ + Y KLG + A E Y+ + + + + Y L A+ +G ++A ++ A+
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 661 ESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD 703
E P NA Y +L Y K+G +EA E Y+ ++LE P+
Sbjct: 62 ELD--PDNAKAYYNLGLAYYKLGKYEEALEAYE--KALELDPN 100
|
Length = 100 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 4e-04
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 628 FNVEPDVVVYGVLINAFADVGNVKQAQSYFDAME 661
++PDVV Y LI+ G V +A D ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 5e-04
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 772 DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSL 814
D+++YN ++ Y G+ ++ + F +M I+P+ +T+ L
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 357 VTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDT 391
VT+NT+I ++ E L K+M+E PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 531 VFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPD 563
+N ++ ++A LF M G PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 602 YCAVISSYMKLGQLEMAEEVYKDMIRFNVEP 632
Y A++ + K G ++A V ++M ++P
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 602 YCAVISSYMKLGQLEMAEEVYKDMIRFNV 630
Y ++IS Y K G+LE A E++K+M V
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 856 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.98 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.97 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.88 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.87 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.83 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.81 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.71 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.71 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.68 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.68 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.67 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.66 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.65 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.63 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.62 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.62 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.61 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.56 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.55 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.54 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.52 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.52 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.5 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.5 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.5 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.46 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.45 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.44 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.43 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.43 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.42 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.41 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.4 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.4 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.38 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.37 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.37 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.36 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.36 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.35 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.35 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.35 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.34 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.34 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.33 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.32 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.32 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.32 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.31 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.25 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.24 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.22 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.18 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.15 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.1 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.09 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.09 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.05 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.05 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.04 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.02 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.99 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.95 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.94 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.93 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.92 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.9 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.89 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.88 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.87 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.86 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.86 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.85 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.84 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.81 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.78 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.77 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.72 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.71 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.69 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.69 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.67 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.66 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.64 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.64 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.61 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.58 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.55 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.55 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.52 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.51 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.46 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.45 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.44 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.43 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.41 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.4 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.35 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.32 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.29 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.24 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.24 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.24 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.22 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.2 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.13 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.13 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.11 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.1 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.03 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.0 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.97 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.96 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.95 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.95 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.95 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.94 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.94 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.93 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.91 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.9 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.89 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.86 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.85 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.85 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.85 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.82 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.79 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.77 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.76 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.73 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.72 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.72 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.7 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.66 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.65 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.65 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.64 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.61 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.61 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.6 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.56 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.54 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.5 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.49 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.48 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.46 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.45 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.41 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.39 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.39 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.38 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.36 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.36 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.35 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.35 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.34 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.34 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.33 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.33 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.32 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.32 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.22 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.2 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.18 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.17 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.15 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.14 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.14 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.1 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.08 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.05 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.0 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.97 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.92 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.92 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.89 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.88 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.84 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.81 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.75 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.7 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.68 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.64 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.61 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.6 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.6 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.58 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.55 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.55 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.52 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.42 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.31 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.3 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.2 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.2 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.05 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.02 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 95.87 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.83 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.8 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.77 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.66 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.63 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.61 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.58 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.54 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.52 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.48 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.45 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.41 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.37 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.34 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.33 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.2 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.15 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 95.09 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.97 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.96 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.85 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.72 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.61 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.55 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.52 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.45 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.43 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.35 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 94.29 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.19 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.19 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 94.13 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.04 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.04 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.03 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.02 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.91 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.83 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.65 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.61 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.6 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.57 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.54 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.52 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.5 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.5 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.35 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.24 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.15 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.13 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.04 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 92.99 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.88 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.47 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 92.44 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.18 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.02 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.84 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.33 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.27 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.25 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.15 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 91.12 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 91.04 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 90.91 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.88 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.63 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.39 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 90.12 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 89.9 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.6 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 89.42 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 89.38 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.05 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.9 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.68 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.45 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.35 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.19 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 88.18 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.84 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.76 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 87.64 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.51 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.49 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.01 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 86.26 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 86.03 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.0 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 85.59 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 85.36 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 85.31 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 85.16 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.81 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 84.37 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 84.01 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.86 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.66 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 83.65 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 83.54 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 83.46 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 82.8 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.34 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 82.19 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 82.14 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 81.49 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 81.27 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 81.24 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.16 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 80.79 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 80.36 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 80.35 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-78 Score=717.40 Aligned_cols=663 Identities=17% Similarity=0.191 Sum_probs=612.4
Q ss_pred cccccccccccCCcccccccccccccccccccccccCCchhHHHhhccccccHHHHhhHhhhhcC----h-----hHHHH
Q 003020 96 TWVDVRIGNERRTDVISAVCVNGEVQTKCSTKWARYGGCIPSMLQALDTVKDLDEALKPWAENLS----N-----KERSI 166 (856)
Q Consensus 96 ~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~----~-----~~~~~ 166 (856)
.++.++..|.+.|++++|..+|+.+...... .-......++.++...+.++.+...+...+. + +.+-.
T Consensus 53 ~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~ 129 (857)
T PLN03077 53 DSNSQLRALCSHGQLEQALKLLESMQELRVP---VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS 129 (857)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---CChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH
Confidence 4677888888888888888888876553211 1112234667777777777777777754211 1 22334
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHH
Q 003020 167 ILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKE 246 (856)
Q Consensus 167 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 246 (856)
.+.+.|+++.|+++|+.|. +||+.+||.+|.+|++.|++++|.++|++|...|+.||..||+.++++|+..++..
T Consensus 130 ~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 4677899999999999995 57899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHH
Q 003020 247 EAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNT 326 (856)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (856)
.+.+++..|.+.|+.||..+++.++.+|++.|++++|..+|++|. .+|.++||+
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~--------------------------~~d~~s~n~ 258 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP--------------------------RRDCISWNA 258 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC--------------------------CCCcchhHH
Confidence 999999999999999999999999999999999999999999875 347799999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 003020 327 LIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDK 406 (856)
Q Consensus 327 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 406 (856)
+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..+.+.|+.||..+||+|+.+|++.|+
T Consensus 259 li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 338 (857)
T PLN03077 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHH
Q 003020 407 ISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRR 486 (856)
Q Consensus 407 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 486 (856)
+++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.||..|++.++.+|++.|+++.|.++++.
T Consensus 339 ~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 414 (857)
T PLN03077 339 WGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL 414 (857)
T ss_pred HHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHH
Confidence 999999999997 4899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCC-CCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 003020 487 FHLAGD-MSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKC 565 (856)
Q Consensus 487 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 565 (856)
+...+. .+..+++.++++|.+.|++++|.++|+.+.+ ++..+|+.++.+|++.|+.++|+.+|++|.. ++.||..
T Consensus 415 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~ 490 (857)
T PLN03077 415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSV 490 (857)
T ss_pred HHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHh
Confidence 987764 5677899999999999999999999998874 5788999999999999999999999999986 5999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003020 566 SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFA 645 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 645 (856)
||+.++.+|++.|..+.+.+++..+.+.|+.+|..++++|+++|+++|++++|.++|+.+ .||..+||++|.+|+
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~ 565 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYV 565 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987 679999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003020 646 DVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLR-SLEASPDVYTSNCMIDLYSERSMVRQAE 724 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 724 (856)
+.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.++.|+..+|++++++|++.|++++|.
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999 5899999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003020 725 EIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAI 804 (856)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 804 (856)
+++++|. ..||..+|.+|+.+|...|+.+.|+...+++.+..|. +...|..+++.|+..|+|++|.++++.|.+.|+
T Consensus 646 ~~~~~m~--~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~ 722 (857)
T PLN03077 646 NFINKMP--ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722 (857)
T ss_pred HHHHHCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Confidence 9999995 4789999999999999999999999999999999887 889999999999999999999999999999999
Q ss_pred CCCH
Q 003020 805 QPDD 808 (856)
Q Consensus 805 ~p~~ 808 (856)
++++
T Consensus 723 ~k~~ 726 (857)
T PLN03077 723 TVDP 726 (857)
T ss_pred CCCC
Confidence 8765
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-74 Score=680.20 Aligned_cols=615 Identities=20% Similarity=0.233 Sum_probs=591.0
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 003020 190 HELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGI 269 (856)
Q Consensus 190 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 269 (856)
..++..++|.++..+++.|++++|..+|+.|.+.|+.|+..+|..++.+|.+.+..+.|..++..+.+.+..++..+++.
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 36778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 270 VVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLR 349 (856)
Q Consensus 270 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 349 (856)
++.+|++.|+++.|..+|++|. .+|..+||.+|.+|++.|++++|+++|++|..
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~--------------------------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~ 180 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMP--------------------------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCC--------------------------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999999999999875 35789999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhH
Q 003020 350 EGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSY 429 (856)
Q Consensus 350 ~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 429 (856)
.|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..++|+|+.+|++.|++++|.++|++|. .||..+|
T Consensus 181 ~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~ 256 (857)
T PLN03077 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISW 256 (857)
T ss_pred cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 4899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchhhHHHHHHHhhc
Q 003020 430 RTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAG-DMSSEGYSANIDGYGER 508 (856)
Q Consensus 430 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 508 (856)
|.++.+|++.|++++|+++|.+|.+.|+.||..||+.++.+|.+.|+.+.+.+++..+...+ .++..+++.++.+|.+.
T Consensus 257 n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999998765 56788999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 003020 509 GHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLR 588 (856)
Q Consensus 509 g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~ 588 (856)
|++++|.++|+.+. .++..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++
T Consensus 337 g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 337 GSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred CCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999986 467889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003020 589 KMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPN 668 (856)
Q Consensus 589 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 668 (856)
.+.+.|+.|+..+|+.|+++|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|+.+|++|.. +++||
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd 488 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPN 488 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCC
Confidence 99999999999999999999999999999999999995 57889999999999999999999999999986 58999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY 748 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 748 (856)
..||+.++.+|++.|..+.+.+++..+.+.|+.++..+++.|+++|++.|++++|.++|+.+ ++|..+|+.|+.+|
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~ 564 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGY 564 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987 67999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcC-----
Q 003020 749 KRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMV-NAAIQPDDFTFKSLGAVLMKCG----- 822 (856)
Q Consensus 749 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~G----- 822 (856)
++.|+.++|+++|++|.+.|+.||..+|+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|++++.+|+++|
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999 6899999999999999999999
Q ss_pred HHHHHhhcchhhHHHHHHHHhhHh
Q 003020 823 LELTRKKNAQSGLQAWMSTLSSVI 846 (856)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~ 846 (856)
.+.+.+|+..|+..+|.++++.+.
T Consensus 645 ~~~~~~m~~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 645 YNFINKMPITPDPAVWGALLNACR 668 (857)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHH
Confidence 777778889999999999999873
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-64 Score=579.26 Aligned_cols=524 Identities=16% Similarity=0.231 Sum_probs=413.8
Q ss_pred CCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchh
Q 003020 225 IVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGM-EPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTK 303 (856)
Q Consensus 225 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 303 (856)
..++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++..|.+.|.+++|..+|+.|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~------------ 433 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR------------ 433 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC------------
Confidence 345677888888888888889999999999888874 5677778888888888888888888887763
Q ss_pred hhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003020 304 TMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKME 383 (856)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 383 (856)
.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 434 --------------~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~ 499 (1060)
T PLN03218 434 --------------NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499 (1060)
T ss_pred --------------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 167888999999999999999999999999888888898899999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhc--CCCCCCH
Q 003020 384 ELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDG--GGLEIDE 461 (856)
Q Consensus 384 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~p~~ 461 (856)
+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||.
T Consensus 500 ~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~ 579 (1060)
T PLN03218 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH
Confidence 88888899999999999999999999999999998888888988999999999999999999999988875 5788888
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Q 003020 462 YTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGM 541 (856)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 541 (856)
.+|+.++.+|++.|++++|.++|+.+...+ .+++..+|+.+|.+|++
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~g---------------------------------i~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYN---------------------------------IKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---------------------------------CCCChHHHHHHHHHHHh
Confidence 888888888888888888877777766332 14556667777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 003020 542 GRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEV 621 (856)
Q Consensus 542 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 621 (856)
.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.||..+|+.++.+|++.|++++|.++
T Consensus 627 ~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003020 622 YKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEAS 701 (856)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 701 (856)
|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.
T Consensus 707 f~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 77777666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHcCCHHHH
Q 003020 702 PDVYTSNCMIDLYSE-----------------------RSMVRQAEEIFEIMKKKG-DANEFTYAMMLIMYKRNGRFEEA 757 (856)
Q Consensus 702 p~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 757 (856)
||..+|++++..|.+ .+..++|..+|++|.+.+ .||..+|..++.+++..+..+.+
T Consensus 787 pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~ 866 (1060)
T PLN03218 787 PNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLR 866 (1060)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHH
Confidence 777777776654321 122467888999999888 78888999988888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 758 TRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 758 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
..+++.+...+..|+..+|+.++.++.+. .++|..++++|.+.|+.|+..
T Consensus 867 ~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 867 NRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 88888887777777888999999887322 368999999999999888875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-64 Score=577.28 Aligned_cols=534 Identities=17% Similarity=0.220 Sum_probs=434.8
Q ss_pred HHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHH
Q 003020 168 LKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEE 247 (856)
Q Consensus 168 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 247 (856)
+.+.|++++|+++|++|.+.+..+++..+++.++..|.+.|..++|..+|+.|.. ||..+|+.++.+|++.|++++
T Consensus 380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~ 455 (1060)
T PLN03218 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDG 455 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHH
Confidence 4456888888888888887776667777788888888888888888888887764 788888888888888888888
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHH
Q 003020 248 AVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTL 327 (856)
Q Consensus 248 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (856)
|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|. ..+..||..+|+.+
T Consensus 456 A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~----------------------~~Gv~PdvvTynaL 513 (1060)
T PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV----------------------NAGVEANVHTFGAL 513 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH----------------------HcCCCCCHHHHHHH
Confidence 88888888888888888888888888888888888888888886 34566788888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHccC
Q 003020 328 IDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEE--LHCPPDTRTYNILIFLHAKND 405 (856)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g 405 (856)
|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ .++.||..+|+++|.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 888888888888888888888888888888888888888888888888888888875 467788888888888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHH
Q 003020 406 KISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFR 485 (856)
Q Consensus 406 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 485 (856)
++++|.++|++|.+.|++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888877777777777766
Q ss_pred HHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 003020 486 RFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKC 565 (856)
Q Consensus 486 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 565 (856)
.+... ...++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 674 eM~k~---------------------------------G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvv 720 (1060)
T PLN03218 674 DARKQ---------------------------------GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS 720 (1060)
T ss_pred HHHHc---------------------------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 66522 225678888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003020 566 SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFA 645 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 645 (856)
+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++..|.
T Consensus 721 tyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888876543
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 646 DVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEE 725 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 725 (856)
+++++|..+.+.+...+. +......+..++|+.+|++|.+.|+.||..+|+.++.+++..+..+.+..
T Consensus 801 --~~y~ka~~l~~~v~~f~~----------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~ 868 (1060)
T PLN03218 801 --RRFEKACALGEPVVSFDS----------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNR 868 (1060)
T ss_pred --HHHHHHhhhhhhhhhhhc----------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHH
Confidence 245666555444432210 11111223456799999999999999999999999988888999999999
Q ss_pred HHHHHHhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 726 IFEIMKKKG-DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLL 774 (856)
Q Consensus 726 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 774 (856)
+++.|...+ +++..+|+.|+.++.+. .++|..++++|.+.|+.|+..
T Consensus 869 m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 869 LIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 999887665 78899999999998432 468999999999999998764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-60 Score=546.47 Aligned_cols=514 Identities=20% Similarity=0.250 Sum_probs=463.6
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 003020 191 ELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKG-IVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGI 269 (856)
Q Consensus 191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 269 (856)
..+..+|+.+|..+.+.|++++|.++|+.|...+ ..||..+|+.++.+|.+.++.+.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4566789999999999999999999999998764 679999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 270 VVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLR 349 (856)
Q Consensus 270 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 349 (856)
++.+|++.|++++|.++|++|. .+|.++||.+|.+|++.|++++|+++|++|.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~--------------------------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~ 217 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP--------------------------ERNLASWGTIIGGLVDAGNYREAFALFREMWE 217 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC--------------------------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999875 25789999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhH
Q 003020 350 EGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSY 429 (856)
Q Consensus 350 ~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 429 (856)
.|+.|+..||+.++.+|++.|..+.+.+++..+.+.|+.||..+||+|+++|+++|++++|.++|++|. ++|..+|
T Consensus 218 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~ 293 (697)
T PLN03081 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAW 293 (697)
T ss_pred hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999996 4799999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcC
Q 003020 430 RTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERG 509 (856)
Q Consensus 430 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 509 (856)
|.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus 294 n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~-------------------------------------- 335 (697)
T PLN03081 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF-------------------------------------- 335 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--------------------------------------
Confidence 999999999999999999999999999988877766665554
Q ss_pred CHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 003020 510 HVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRK 589 (856)
Q Consensus 510 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~ 589 (856)
++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++
T Consensus 336 ------------------------------~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~ 385 (697)
T PLN03081 336 ------------------------------SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385 (697)
T ss_pred ------------------------------HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh
Confidence 44556677778888888889999999999999999999999999999998
Q ss_pred HHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCC
Q 003020 590 MQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMES-AGLPPN 668 (856)
Q Consensus 590 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~ 668 (856)
|.+ +|..+|++++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+
T Consensus 386 m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~ 461 (697)
T PLN03081 386 MPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461 (697)
T ss_pred CCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Confidence 864 688999999999999999999999999999999999999999999999999999999999999975 689999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY 748 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 748 (856)
..+|+.++++|++.|++++|.+++++| ++.|+..+|+.|+.+|...|+++.|..+++++.+..|.+..+|..|+.+|
T Consensus 462 ~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 462 AMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY 538 (697)
T ss_pred ccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHH
Confidence 999999999999999999999998764 67899999999999999999999999999999988888889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHH---HHH--------hcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 749 KRNGRFEEATRIAKQMRESGLISDL-LSYNNVLG---LYA--------VDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 749 ~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~---~~~--------~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
++.|++++|.+++++|.+.|+.+.+ .+|..+.. .+. ...-++...++.++|.+.|+.||..
T Consensus 539 ~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 539 NSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999999999999986443 33322110 000 0112455667888899999999854
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=543.56 Aligned_cols=476 Identities=18% Similarity=0.282 Sum_probs=428.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHH
Q 003020 263 DEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASE 342 (856)
Q Consensus 263 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 342 (856)
+..+++.++..+.+.|++++|.++|+.+.. .....|+..+|+.++.++.+.++++.|.+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~---------------------~~~~~~~~~t~~~ll~a~~~~~~~~~a~~ 144 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEA---------------------GCPFTLPASTYDALVEACIALKSIRCVKA 144 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHh---------------------cCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 445666667777777777777777766642 22345678888888888888888888888
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 003020 343 TFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANL 422 (856)
Q Consensus 343 ~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 422 (856)
++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+||+++.+|++.|++++|+++|++|.+.|+
T Consensus 145 l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 220 (697)
T PLN03081 145 VYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220 (697)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 88888888888888888888888888888888888888886 47888888888888888888888888888888888
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHH
Q 003020 423 EPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANI 502 (856)
Q Consensus 423 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 502 (856)
.|+..+|+.++.+++..|..+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.+.
T Consensus 221 ~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------------- 286 (697)
T PLN03081 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-------------- 286 (697)
T ss_pred CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--------------
Confidence 888888888888888888888888888888888888888888888888888887777777776654
Q ss_pred HHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHH
Q 003020 503 DGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHM 582 (856)
Q Consensus 503 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 582 (856)
.+++.+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++
T Consensus 287 -----------------------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~ 343 (697)
T PLN03081 287 -----------------------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH 343 (697)
T ss_pred -----------------------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHH
Confidence 457899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 583 AKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMES 662 (856)
Q Consensus 583 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (856)
|.+++..|.+.|+.||..+|++|+++|++.|++++|.++|++|. .||..+||.||.+|++.|+.++|+++|++|.+
T Consensus 344 a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred HHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999995 57999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH
Q 003020 663 AGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS-LEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTY 741 (856)
Q Consensus 663 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 741 (856)
.|+.||..||+.++.+|++.|++++|.++|+.|.+ .++.|+..+|++++++|++.|++++|.+++++|. ..|+..+|
T Consensus 420 ~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~ 497 (697)
T PLN03081 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--FKPTVNMW 497 (697)
T ss_pred hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHH
Confidence 99999999999999999999999999999999986 7999999999999999999999999999998874 36889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003020 742 AMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD 807 (856)
Q Consensus 742 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 807 (856)
+.|+.+|...|+++.|..+++++.+.+|. +..+|..++++|++.|+|++|.+++++|.+.|+++.
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999988776 778999999999999999999999999999998643
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=438.70 Aligned_cols=722 Identities=13% Similarity=0.046 Sum_probs=621.5
Q ss_pred CCch-hhhhcccccccCCCCCCCCCccchhhhhhhhhccCCccccccccccccccccccCCccccccccccccccccccc
Q 003020 49 NSNS-ERVKRLSKVHNHSKFDKPNGVVHEHELKKQSFEQKPHREQSKNTWVDVRIGNERRTDVISAVCVNGEVQTKCSTK 127 (856)
Q Consensus 49 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~ 127 (856)
+++. ..+..++..+...|++..|..+.++++ ..+|.....|..++.++...|++++|...|++++...+..
T Consensus 155 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 226 (899)
T TIGR02917 155 DPRSLYAKLGLAQLALAENRFDEARALIDEVL--------TADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN 226 (899)
T ss_pred CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHH--------HhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 3444 678888999999999999999999998 3345566689999999999999999999999987766543
Q ss_pred ccccCCchhHHHhhccccccHHHHhhHhhhhcC--hh------HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHH
Q 003020 128 WARYGGCIPSMLQALDTVKDLDEALKPWAENLS--NK------ERSIILKEQSSWERALEIFEWFKRQECHELNVIHYNI 199 (856)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~--~~------~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (856)
.. ....++..+...|++++|...+..... |. ..+.++...|++++|+..|+.+.+.. +.+...+..
T Consensus 227 ~~----~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~ 300 (899)
T TIGR02917 227 PA----VLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLL 300 (899)
T ss_pred HH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 22 123566677888999999998876322 11 23455667899999999999998765 233445556
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCC
Q 003020 200 MLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGE 279 (856)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 279 (856)
+...+...|++++|...|++++...+. +...+..++..+...|++++|...++++.+.. +.+...+..+...+.+.|+
T Consensus 301 ~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 378 (899)
T TIGR02917 301 AGASEYQLGNLEQAYQYLNQILKYAPN-SHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGD 378 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCC
Confidence 677888999999999999999887544 67788899999999999999999999998775 3467788899999999999
Q ss_pred hhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 003020 280 FQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTF 359 (856)
Q Consensus 280 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 359 (856)
+++|..+|+++... .+.+...|..+...+...|++++|++.|+++.+.+.. .....
T Consensus 379 ~~~A~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~ 434 (899)
T TIGR02917 379 FEKAAEYLAKATEL-----------------------DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRAD 434 (899)
T ss_pred HHHHHHHHHHHHhc-----------------------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhH
Confidence 99999999987531 1235678889999999999999999999999886533 34456
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 003020 360 NTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIR 439 (856)
Q Consensus 360 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 439 (856)
..++..+.+.|++++|..+++++.+.. +++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...
T Consensus 435 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 435 LLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQE 512 (899)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHC
Confidence 677888999999999999999998653 6678899999999999999999999999998764 35667788899999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHH
Q 003020 440 RMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFI 519 (856)
Q Consensus 440 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 519 (856)
|++++|.+.|+++.+..+ .+..++..+...+...|+.++|..+++++...+|.+...+..++..+...|++++|...++
T Consensus 513 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred CCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999987653 3677888999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh
Q 003020 520 CCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDC 599 (856)
Q Consensus 520 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 599 (856)
.+....+.+...|..++.++...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+.
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 669 (899)
T TIGR02917 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNT 669 (899)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCH
Confidence 9999888899999999999999999999999999998763 3466778889999999999999999999998864 4467
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 600 IPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLY 679 (856)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 679 (856)
.++..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+++...+ |+..++..++.++
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 746 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHH
Confidence 889999999999999999999999998875 4577888889999999999999999999998864 4557788899999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 680 TKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATR 759 (856)
Q Consensus 680 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 759 (856)
.+.|++++|.+.++.+.+.. +.+...+..++..|...|++++|.+.|+++.+..|.++.++..++.++...|+ .+|+.
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHH
Confidence 99999999999999998854 35677888999999999999999999999999999999999999999999999 88999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003020 760 IAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 760 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G 822 (856)
+++++.+..|. ++.++..++.++...|++++|...++++++.+ ..+..++..+..++.+.|
T Consensus 825 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 825 YAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATG 885 (899)
T ss_pred HHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcC
Confidence 99999999887 78899999999999999999999999999965 337788999999999999
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-44 Score=434.33 Aligned_cols=717 Identities=12% Similarity=0.033 Sum_probs=620.8
Q ss_pred hhhhcccccccCCCCCCCCCccchhhhhhhhhccCCccccccccccccccccccCCcccccccccccccccccccccccC
Q 003020 53 ERVKRLSKVHNHSKFDKPNGVVHEHELKKQSFEQKPHREQSKNTWVDVRIGNERRTDVISAVCVNGEVQTKCSTKWARYG 132 (856)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 132 (856)
..+..++..+...|+++.|...+++++ ..+|+....+..++..+...|++++|...+++++..++....
T Consensus 126 ~~~~~~~~~~~~~~~~~~A~~~~~~a~--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--- 194 (899)
T TIGR02917 126 ELLALRGLAYLGLGQLELAQKSYEQAL--------AIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVD--- 194 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH--------hcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH---
Confidence 778888888899999999999999999 445566678999999999999999999999998777653322
Q ss_pred CchhHHHhhccccccHHHHhhHhhhhc--Chh------HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHH
Q 003020 133 GCIPSMLQALDTVKDLDEALKPWAENL--SNK------ERSIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTL 204 (856)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~al~~~~~~~--~~~------~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 204 (856)
....+...+...|++++|+..|.+.+ +|. ..+.++...|++++|...++.+.+..+ .+...+......+
T Consensus 195 -~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~ 271 (899)
T TIGR02917 195 -ALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAP--NSPLAHYLKALVD 271 (899)
T ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCchHHHHHHHHH
Confidence 12245666788999999999998743 232 245567788999999999999988753 3444455556667
Q ss_pred HccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHH
Q 003020 205 GKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAE 284 (856)
Q Consensus 205 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 284 (856)
...|++++|...|+++.+.++. +...+..+...+...|++++|...|+++.+..+ .+...+..+...+.+.|++++|.
T Consensus 272 ~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~ 349 (899)
T TIGR02917 272 FQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAI 349 (899)
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHH
Confidence 7899999999999999987644 455667778889999999999999999998753 35667788889999999999999
Q ss_pred HHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 003020 285 EFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIH 364 (856)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 364 (856)
..++.+.. ..+.+...+..++..+.+.|++++|.+.|+++.+... .+...+..+..
T Consensus 350 ~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 405 (899)
T TIGR02917 350 ATLSPALG-----------------------LDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGI 405 (899)
T ss_pred HHHHHHHh-----------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 99998753 1234678899999999999999999999999988643 35667888889
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH
Q 003020 365 IYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCE 444 (856)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 444 (856)
.+...|++++|...++++.+.. +........++..+.+.|++++|.++++++.... +++..+|..+...+...|++++
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHH
Confidence 9999999999999999998765 3345667778899999999999999999998754 4678899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 003020 445 AEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEG 524 (856)
Q Consensus 445 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 524 (856)
|.+.|+++++... .+...+..++..+...|++++|...|+++....|.+..++..++..+...|+.++|...|.++...
T Consensus 484 A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 484 AREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999987643 356678889999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHH
Q 003020 525 KKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCA 604 (856)
Q Consensus 525 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 604 (856)
.+.+...+..++..+...|++++|..+++.+.+. .+.+..++..++.++...|++++|...++.+.+.. +.+...+..
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 640 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLL 640 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 8888999999999999999999999999999875 34577899999999999999999999999998864 446778899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003020 605 VISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGY 684 (856)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 684 (856)
+..++.+.|++++|...|+++.+.. +.+..++..++..+...|++++|..+++.+.+.+ +++...+..++..+...|+
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCC
Confidence 9999999999999999999999864 4468899999999999999999999999998875 6778889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003020 685 LKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQM 764 (856)
Q Consensus 685 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 764 (856)
+++|.+.|+.+.+.. |+..++..++.++...|++++|.+.++++.+..|.+..++..++..|...|++++|++.|+++
T Consensus 719 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 719 YPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 999999999998854 555677788999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcC
Q 003020 765 RESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD-DFTFKSLGAVLMKCG 822 (856)
Q Consensus 765 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~G 822 (856)
++..|. ++.+++.++.++...|+ .+|+.+++++++. .|+ ..++..+..++...|
T Consensus 797 ~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 797 VKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcC
Confidence 999887 89999999999999999 8899999999985 454 456888999999999
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-30 Score=311.13 Aligned_cols=620 Identities=12% Similarity=0.042 Sum_probs=466.7
Q ss_pred HHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhh--------------
Q 003020 166 IILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINST-------------- 231 (856)
Q Consensus 166 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-------------- 231 (856)
.+....++.+.|.+.++++.... +.++.++..++..+.+.|+.++|...+++..+..+. +...
T Consensus 36 ~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 36 RLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCch
Confidence 34556789999999999998775 556777888899999999999999999999886543 3332
Q ss_pred --HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhh
Q 003020 232 --YGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKV 309 (856)
Q Consensus 232 --~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (856)
...++..+...|++++|++.|+++.+..++................|+.++|+..++++...
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~---------------- 176 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD---------------- 176 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh----------------
Confidence 23445578899999999999999987643322211111222233468999999999998642
Q ss_pred ccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------------CH---HhHHHHHHHHhcCC
Q 003020 310 ENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVP----------------TT---VTFNTMIHIYGNND 370 (856)
Q Consensus 310 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p----------------~~---~~~~~ll~~~~~~g 370 (856)
.+.+...+..+...+...|++++|++.|+++.+..... +. ..+...+..+-...
T Consensus 177 -------~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~ 249 (1157)
T PRK11447 177 -------YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGD 249 (1157)
T ss_pred -------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCch
Confidence 23356778899999999999999999999987642110 00 01111222222223
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 003020 371 QLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELIS 450 (856)
Q Consensus 371 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 450 (856)
..+.|...+.+.......|... .......+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..|+
T Consensus 250 ~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~ 327 (1157)
T PRK11447 250 SVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFE 327 (1157)
T ss_pred HHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445556665554332223322 2234567788999999999999998864 3478889999999999999999999999
Q ss_pred HHhcCCCCCCH-h------------hHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHH
Q 003020 451 EMDGGGLEIDE-Y------------TQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERA 517 (856)
Q Consensus 451 ~~~~~~~~p~~-~------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 517 (856)
+.++....... . ........+.+.|++++|+..|+++....|.+..++..++..+...|++++|++.
T Consensus 328 ~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~ 407 (1157)
T PRK11447 328 KALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERY 407 (1157)
T ss_pred HHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99876543221 1 1123356678899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 003020 518 FICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAV--------PDKCSYNSLIQILAGADLPHMAKRYLRK 589 (856)
Q Consensus 518 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~~~~~~A~~~~~~ 589 (856)
|+++....|.+...+..+...|. .+++++|+..++.+...... .....+..+...+...|++++|++.+++
T Consensus 408 y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~ 486 (1157)
T PRK11447 408 YQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQ 486 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999988888888888888885 45789999988775432100 0122355667788899999999999999
Q ss_pred HHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003020 590 MQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA 669 (856)
Q Consensus 590 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 669 (856)
+++.. +.+...+..+...|.+.|++++|...++++++..+ .+...+..+...+...++.++|+..++.+......++.
T Consensus 487 Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~ 564 (1157)
T PRK11447 487 RLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNI 564 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhH
Confidence 99875 33566788899999999999999999999987643 35556656666677899999999999887543222222
Q ss_pred H---------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHH
Q 003020 670 V---------IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFT 740 (856)
Q Consensus 670 ~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 740 (856)
. .+..+...+...|++++|+++++. .+++...+..+...+.+.|++++|++.|+++.+..|.++.+
T Consensus 565 ~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a 639 (1157)
T PRK11447 565 QELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADA 639 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 1 123456778899999999999872 23455566788999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC---CHHHHHHHH
Q 003020 741 YAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAI--QP---DDFTFKSLG 815 (856)
Q Consensus 741 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p---~~~~~~~l~ 815 (856)
+..++.+|...|++++|++.++++.+..|. ++..+..++.++...|++++|.+++++++...- .| +...+..+.
T Consensus 640 ~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a 718 (1157)
T PRK11447 640 RLGLIEVDIAQGDLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAA 718 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHH
Confidence 999999999999999999999999988766 778888899999999999999999999987421 12 123566677
Q ss_pred HHHHHcC
Q 003020 816 AVLMKCG 822 (856)
Q Consensus 816 ~~~~~~G 822 (856)
..+...|
T Consensus 719 ~~~~~~G 725 (1157)
T PRK11447 719 RFEAQTG 725 (1157)
T ss_pred HHHHHcC
Confidence 8888888
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-29 Score=306.89 Aligned_cols=622 Identities=12% Similarity=0.044 Sum_probs=447.0
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCCHH--------------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChh-h
Q 003020 167 ILKEQSSWERALEIFEWFKRQECHELNVI--------------HYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINS-T 231 (856)
Q Consensus 167 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~--------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~ 231 (856)
++...|+.++|.+.++...+..+..+... ....+...+.+.|++++|...|+++...++. +.. .
T Consensus 71 ~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la 149 (1157)
T PRK11447 71 LLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLA 149 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHH
Confidence 34456777777777777666542222211 1233345677788888888888887765433 322 1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhcc
Q 003020 232 YGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVEN 311 (856)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (856)
...+.......|+.++|+..|+++.+..+. +...+..+...+...|+.++|+..++++...... ....+....+.
T Consensus 150 ~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~----~~~aa~~~~~~ 224 (1157)
T PRK11447 150 VEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG----RDAAAQLWYGQ 224 (1157)
T ss_pred HHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc----hHHHHHHHHHH
Confidence 112222233458888888888888877433 5556777777888888888888888876431100 00000000000
Q ss_pred CCc-CCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC
Q 003020 312 GSH-VNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPD 390 (856)
Q Consensus 312 ~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 390 (856)
... .........+...+..+-.....+.|...+.++......|+... ......+...|++++|...|++.++.. |.+
T Consensus 225 l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~ 302 (1157)
T PRK11447 225 IKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKD 302 (1157)
T ss_pred HhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 000 01111223334444433333445667777777655433343322 234566778899999999999999765 557
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHhH------------HHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 003020 391 TRTYNILIFLHAKNDKISMASRYFWKMKEANLEP-DIVSY------------RTLLYAYSIRRMVCEAEELISEMDGGGL 457 (856)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~------------~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 457 (856)
..++..+..++.+.|++++|+..|++..+..... ....| ......+.+.|++++|+..|+++++...
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P 382 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN 382 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 8889999999999999999999999988754321 11112 1224567789999999999999998753
Q ss_pred CCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCC---------c
Q 003020 458 EIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKL---------T 528 (856)
Q Consensus 458 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~ 528 (856)
.+...+..+..++...|++++|+..|+++....|.+..++..++..|. .++.++|+..++.+....+. .
T Consensus 383 -~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 383 -TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 356678888999999999999999999999999998888888888875 45789999888765433211 1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 003020 529 VLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISS 608 (856)
Q Consensus 529 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 608 (856)
...+..+...+...|++++|++.|++.++... -+...+..+...+.+.|++++|...++++++.. +.+...+..+...
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~ 538 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLY 538 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 23456678888999999999999999988632 256678888999999999999999999998754 3355555556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 609 YMKLGQLEMAEEVYKDMIRFNVEPDVV---------VYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLY 679 (856)
Q Consensus 609 ~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 679 (856)
+...++.++|+..++.+......++.. .+..+...+...|+.++|..+++. .+++...+..+...+
T Consensus 539 l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~ 613 (1157)
T PRK11447 539 LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWA 613 (1157)
T ss_pred HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHH
Confidence 778899999999998875432222221 223456778899999999999872 366777888899999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 680 TKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATR 759 (856)
Q Consensus 680 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 759 (856)
.+.|++++|++.|+++.+..+ .+...+..++.++...|++++|++.++.+.+..|.+..++..++.++...|++++|.+
T Consensus 614 ~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 614 QQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999998542 4577888999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC
Q 003020 760 IAKQMRESGLISD-----LLSYNNVLGLYAVDGRFKDVIGTFKDMVN-AAIQP 806 (856)
Q Consensus 760 ~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p 806 (856)
+++++++..+... ...+..++..+...|++++|+..|++.+. .|+.|
T Consensus 693 ~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 693 TFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 9999998765422 25677789999999999999999999875 44543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.8e-26 Score=260.66 Aligned_cols=598 Identities=10% Similarity=-0.008 Sum_probs=439.9
Q ss_pred HHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCH
Q 003020 166 IILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLK 245 (856)
Q Consensus 166 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 245 (856)
..+...|++++|+..|+.+.+.. |.+..++..+...|.+.|++++|+..+++.++.++. |...+..+ ..+ +++
T Consensus 52 ~~~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~-n~~~~~~L-a~i---~~~ 124 (987)
T PRK09782 52 LKAQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG-DARLERSL-AAI---PVE 124 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHHHHHHH-HHh---ccC
Confidence 33455699999999999999886 555788899999999999999999999999987553 55455544 333 899
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHH--------HHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCC
Q 003020 246 EEAVCWLERMNEGGMEPDEVTMGIVVQM--------YKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNG 317 (856)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (856)
++|..+|+++.+..+. +..++..+... |.+.++..+++. .+.. ..
T Consensus 125 ~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~------------------------~~ 177 (987)
T PRK09782 125 VKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATF------------------------AA 177 (987)
T ss_pred hhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--Hhhh------------------------CC
Confidence 9999999999998543 34455555554 666544444544 1111 12
Q ss_pred CcCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc-CCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003020 318 SLSS-YTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGN-NDQLAEVDSLIKKMEELHCPPDTRTYN 395 (856)
Q Consensus 318 ~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~ 395 (856)
.++. +..-.+...|.+.|++++|++++.++.+.+.. +..-...|..+|.. .++ +++..+++... ..+...+.
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~l----k~d~~l~~ 251 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGI----FTDPQSRI 251 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhc----ccCHHHHH
Confidence 2233 34455589999999999999999999998644 45556777778877 466 88888865422 35888999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCC-CCHHhHHHH------------------------------HHHHHhcCCHHH
Q 003020 396 ILIFLHAKNDKISMASRYFWKMKEANLE-PDIVSYRTL------------------------------LYAYSIRRMVCE 444 (856)
Q Consensus 396 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l------------------------------l~~~~~~g~~~~ 444 (856)
.+...|.+.|+.++|.++++++...... |...+|..+ +..+.++++++.
T Consensus 252 ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (987)
T PRK09782 252 TYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA 331 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999987643221 333333222 233445555554
Q ss_pred HHHHHHHHhcCCCCCCHhhHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhc
Q 003020 445 AEELISEMDGGGLEIDEYTQSALTRMYI-EAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQE 523 (856)
Q Consensus 445 A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 523 (856)
++++. .+.|..... .+-.++. ..+...++....+.+....|.+.+....+.-...+.|+.++|.++|+....
T Consensus 332 ~~~~~------~~~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~ 404 (987)
T PRK09782 332 AQKLL------ATLPANEML-EERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYP 404 (987)
T ss_pred HHHHh------cCCCcchHH-HHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcC
Confidence 44331 123333321 1112222 336777777778888878788889999999999999999999999998877
Q ss_pred CC---CCcHHHHHHHHHHHHccCC---HHHHHHH----------------------HHHHHhC-CC-CC--CHHHHHHHH
Q 003020 524 GK---KLTVLVFNVMVKAYGMGRN---YDKACNL----------------------FDSMTSH-GA-VP--DKCSYNSLI 571 (856)
Q Consensus 524 ~~---~~~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~m~~~-~~-~p--~~~~~~~ll 571 (856)
.. ..+......++..|...+. ..++..+ ++..... +. ++ +...+..+.
T Consensus 405 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG 484 (987)
T PRK09782 405 FQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLA 484 (987)
T ss_pred CCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHH
Confidence 42 2345566688888887766 3334333 1111111 11 33 566777777
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003020 572 QILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVK 651 (856)
Q Consensus 572 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 651 (856)
.++.. +++++|...+.+..... |+......+...+...|++++|...|+++... +|+...+..+..++.+.|+.+
T Consensus 485 ~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~ 559 (987)
T PRK09782 485 KCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGA 559 (987)
T ss_pred HHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHH
Confidence 77776 88999999888877754 55544444555667899999999999998764 445556677788889999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 652 QAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMK 731 (856)
Q Consensus 652 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 731 (856)
+|...+++..+.+ +++...+..+.......|++++|+..|++..+.. |+...+..+..++.+.|++++|+..++++.
T Consensus 560 eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL 636 (987)
T PRK09782 560 ARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAAL 636 (987)
T ss_pred HHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998875 4444555555555566799999999999998844 677888999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-H
Q 003020 732 KKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF-T 810 (856)
Q Consensus 732 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~ 810 (856)
...|.++..+..++.++...|++++|+..++++++..|. ++..+.+++.++...|++++|+..+++.++ +.|+.. .
T Consensus 637 ~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i 713 (987)
T PRK09782 637 ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALI 713 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchh
Confidence 999999999999999999999999999999999999987 899999999999999999999999999998 467653 3
Q ss_pred HHHHHHHHHHc
Q 003020 811 FKSLGAVLMKC 821 (856)
Q Consensus 811 ~~~l~~~~~~~ 821 (856)
.......+.+.
T Consensus 714 ~~~~g~~~~~~ 724 (987)
T PRK09782 714 TPLTPEQNQQR 724 (987)
T ss_pred hhhhhHHHHHH
Confidence 33333333333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-25 Score=256.39 Aligned_cols=661 Identities=9% Similarity=-0.037 Sum_probs=441.9
Q ss_pred cccccccccCCcccccccccccccccccccccccCCchhHHHhhccccccHHHHhhHhhhh--cChh--HHHHHHHhcCC
Q 003020 98 VDVRIGNERRTDVISAVCVNGEVQTKCSTKWARYGGCIPSMLQALDTVKDLDEALKPWAEN--LSNK--ERSIILKEQSS 173 (856)
Q Consensus 98 ~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~--~~~~--~~~~~l~~~~~ 173 (856)
+..+..+...|++++|...|++++..+|.... ....+++.+...|+.++|+....+. .+|. .....+...++
T Consensus 48 f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~----~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~ 123 (987)
T PRK09782 48 LDKALKAQKNNDEATAIREFEYIHQQVPDNIP----LTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPV 123 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhcc
Confidence 55566666779999999999998888866533 2257788888899999999988873 3333 22333444588
Q ss_pred HHHHHHHHHHhHHcCCCCCCHHHHHHHHHH--------HHccCCHHHHHHHHHHHHhCCCCcChhhHHHH-HHHHHcCCC
Q 003020 174 WERALEIFEWFKRQECHELNVIHYNIMLRT--------LGKARKWSYVQSLWDEMSVKGIVPINSTYGTL-IDVCSKGGL 244 (856)
Q Consensus 174 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~ 244 (856)
+++|..+|+.+.... |.+..++..+... |.+. ++|.+.++ .....+.|+..+.... ...|.+.|+
T Consensus 124 ~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~d 197 (987)
T PRK09782 124 EVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQ 197 (987)
T ss_pred ChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhC
Confidence 899999999888775 3444445444444 5444 55555555 3333344445544444 889999999
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHh-cCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhH
Q 003020 245 KEEAVCWLERMNEGGMEPDEVTMGIVVQMYKK-AGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYT 323 (856)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (856)
+++|+..+.++.+.++. +......+..+|.. .++ +++..+++.. ...+...
T Consensus 198 w~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~--------------------------lk~d~~l 249 (987)
T PRK09782 198 WSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG--------------------------IFTDPQS 249 (987)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh--------------------------cccCHHH
Confidence 99999999999988644 45556666677777 466 7777775421 1236788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHhcCCCHH-HHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 003020 324 YNTLIDTYGKAGQLKEASETFAQMLREGIV-PTTVTFNTMIHIYGNNDQLA-EVDSLIKKMEELHCPPD-TRTYNILIFL 400 (856)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~ll~~~~~~g~~~-~A~~~~~~~~~~~~~~~-~~~~~~li~~ 400 (856)
+..++..|.+.|+.++|..+++++...... |...++..++. +.+... .|..-|.+ +. .++ ....-.++..
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~---r~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~ 322 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLS---KYSANPVQALANYTV--QF--ADNRQYVVGATLPV 322 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHH---hccCchhhhccchhh--hh--HHHHHHHHHHHHHH
Confidence 889999999999999999999987654322 44444433322 222221 11111111 00 001 1122223455
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHH
Q 003020 401 HAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKS 480 (856)
Q Consensus 401 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 480 (856)
+.++++++.|.++.. +.|.......-..+....+...++.+....|.+.. +-+......+.......|+.++|
T Consensus 323 ~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a 395 (987)
T PRK09782 323 LLKEGQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREA 395 (987)
T ss_pred HHhccHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHH
Confidence 555555554443311 11222211111111112244444444444444331 11333444444444455555555
Q ss_pred HHHHHHHHhcCC---CCchhhHHHHHHHhhcCC-------------------------H---HHHHHHHHHHhcCCCC--
Q 003020 481 WLWFRRFHLAGD---MSSEGYSANIDGYGERGH-------------------------V---LEAERAFICCQEGKKL-- 527 (856)
Q Consensus 481 ~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~-------------------------~---~~A~~~~~~~~~~~~~-- 527 (856)
..+|++.....+ .+......++..|...+. . ..+...+.......|.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~ 475 (987)
T PRK09782 396 ADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSY 475 (987)
T ss_pred HHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCC
Confidence 555555543211 111122234444443333 2 2233444445555566
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 003020 528 TVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVIS 607 (856)
Q Consensus 528 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 607 (856)
+...|..+..++.. +++++|+..|.+.... .|+......+..++...|++++|...++++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 88899999999987 8999999988887765 366555445556667899999999999998664 345556677788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003020 608 SYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKE 687 (856)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 687 (856)
.+.+.|++++|...|++.++.. +.+...+..+.......|++++|...+++..+.. |+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 8999999999999999999865 2233444444445556799999999999999864 578899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 688 AQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 688 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
|+..|++..+..+ .+...++.+..++...|++++|++.++++.+..|.++..+..++.++...|++++|+..++++++.
T Consensus 628 A~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 628 AVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999998542 356678888889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003020 768 GLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 768 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G 822 (856)
.|. +..+....+....+..+++.|.+-+++... +.|+..........+...+
T Consensus 707 ~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~~~a~~~~g~~~~~~~ 758 (987)
T PRK09782 707 IDN-QALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFDSSIGLRSGAMSTANN 758 (987)
T ss_pred CCC-CchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCccchhccccchHhhhcc
Confidence 887 778888999999999999999999988776 4666665555555555444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-25 Score=235.99 Aligned_cols=682 Identities=12% Similarity=0.069 Sum_probs=484.9
Q ss_pred cccccccccccCCcccccccccccccccccccccccCCchhHHHhhccccccH--HHHhhHhhhhcChhHHHHHHHhcCC
Q 003020 96 TWVDVRIGNERRTDVISAVCVNGEVQTKCSTKWARYGGCIPSMLQALDTVKDL--DEALKPWAENLSNKERSIILKEQSS 173 (856)
Q Consensus 96 ~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~al~~~~~~~~~~~~~~~l~~~~~ 173 (856)
+|...+.-|.++|+.++.+..++..+-.+. ..|.+.......++...+-+ ..|...-.+ ....--
T Consensus 43 ~wi~~AleYy~~gk~eefi~iLE~g~~~~~---~~y~d~~~~~~~a~~~laay~s~~a~kek~~----------~~k~e~ 109 (1018)
T KOG2002|consen 43 AWIEIALEYYKQGKTEEFIKILESGLIDAN---EEYADVKSDQMKALDILAAYYSQLAMKEKKK----------DEKDEL 109 (1018)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhccc---chhcchHHHHHHHHHHHHHHHHHHHHHHHhc----------chhHHH
Confidence 799999999999999999999987653331 22222222222222221111 111111000 000112
Q ss_pred HHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHH
Q 003020 174 WERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLE 253 (856)
Q Consensus 174 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 253 (856)
+..|...|+.+.+.....+...++....-....-.+++.|...|..+++..+. |+..+.--.......|+|..|+.+|.
T Consensus 110 ~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk 188 (1018)
T KOG2002|consen 110 FDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYK 188 (1018)
T ss_pred HHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHH
Confidence 45688888877766544444444444433333333468999999988887543 76666666666778899999999999
Q ss_pred HHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHh
Q 003020 254 RMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGK 333 (856)
Q Consensus 254 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 333 (856)
+++...+..-+.....+...+.+.|+.+.|...|+++.+. ++ .++.++-.|.-.-..
T Consensus 189 ~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL----------------------dp-~~v~alv~L~~~~l~ 245 (1018)
T KOG2002|consen 189 KALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQL----------------------DP-TCVSALVALGEVDLN 245 (1018)
T ss_pred HHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc----------------------Ch-hhHHHHHHHHHHHHH
Confidence 9887643322223344456777999999999999988642 11 233333333333222
Q ss_pred c---CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCChH
Q 003020 334 A---GQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCP--PDTRTYNILIFLHAKNDKIS 408 (856)
Q Consensus 334 ~---g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~ 408 (856)
. ..+..++.++...-.... -|+...+.|.+.|.-.|++..+..+...+...... --...|--+..+|-..|+++
T Consensus 246 ~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~e 324 (1018)
T KOG2002|consen 246 FNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFE 324 (1018)
T ss_pred ccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHH
Confidence 2 334566677766655433 36778889999999999999999999888854311 12335777889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcC----ChHHHHHHH
Q 003020 409 MASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAG----MLEKSWLWF 484 (856)
Q Consensus 409 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~ 484 (856)
.|..+|.+........-+..+..+...+...|+.+.+...|+...+.. +.+..|...++..|...+ ..+.|..++
T Consensus 325 kA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 325 KAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred HHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 999999988876422224456677888999999999999999998763 336678888888888875 678888899
Q ss_pred HHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHh-----cCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-
Q 003020 485 RRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQ-----EGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSH- 558 (856)
Q Consensus 485 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 558 (856)
.+.....+.+.++|..++..+....-+.. +..|..+. ...+..+...|.++..+...|++++|...|+.....
T Consensus 404 ~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 404 GKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 99988889999999999988877665555 76666554 233577899999999999999999999999988765
Q ss_pred --CCCCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003020 559 --GAVPD------KCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNV 630 (856)
Q Consensus 559 --~~~p~------~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 630 (856)
...++ ..+-..+...+-..++.+.|.++|..+++.. +.-+..|.-++.+....+...+|...++..+..+
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d- 560 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID- 560 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-
Confidence 12222 2244456667777889999999999998863 2223335555444444578889999999998764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHh
Q 003020 631 EPDVVVYGVLINAFADVGNVKQAQSYFDAMESAG-LPPNAVIYNSLIKLYTK------------VGYLKEAQETYKLLRS 697 (856)
Q Consensus 631 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~ 697 (856)
..++..+..+...+.+...+..|..-|+.+.+.- ..+|+.+.-+|++.|.. .+..++|+++|+++++
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 4577778878888888888888888777775532 23677777788886653 3567889999999888
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHH
Q 003020 698 LEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRES-GLISDLLSY 776 (856)
Q Consensus 698 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~ 776 (856)
..+ -+...-|-++-++...|++.+|..+|.+..+....++.+|..++++|..+|+|..|+++|+...+. ....++...
T Consensus 641 ~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl 719 (1018)
T KOG2002|consen 641 NDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVL 719 (1018)
T ss_pred cCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 543 466777788888999999999999999999887777788999999999999999999999998865 455577889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcC
Q 003020 777 NNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFT-FKSLGAVLMKCG 822 (856)
Q Consensus 777 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~G 822 (856)
..|++++.+.|++.+|.+.....+.. .|...+ .-.+.-++.+.+
T Consensus 720 ~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 720 HYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHHHHH
Confidence 99999999999999999999988874 555443 334444455555
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=227.44 Aligned_cols=434 Identities=13% Similarity=0.170 Sum_probs=361.8
Q ss_pred CCCCCCCCCccchhhhhhhhhccCCccccccccccccccccccCCccccccccccc---ccccccccccccCCchhHHHh
Q 003020 64 HSKFDKPNGVVHEHELKKQSFEQKPHREQSKNTWVDVRIGNERRTDVISAVCVNGE---VQTKCSTKWARYGGCIPSMLQ 140 (856)
Q Consensus 64 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 140 (856)
+++++.+|+|+++++| .++.++.++|.+++.+.+++..+++||++||+ ++|+..+.|+.|
T Consensus 85 sq~e~~RARSv~ERAL--------dvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY--------- 147 (677)
T KOG1915|consen 85 SQKEIQRARSVFERAL--------DVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY--------- 147 (677)
T ss_pred hHHHHHHHHHHHHHHH--------hcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH---------
Confidence 3899999999999999 88899999999999999999999999999999 688888999988
Q ss_pred hccccccHHHHhhHhhhhcChhHHHHHHHhcCCHHHHHHHHH-HhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003020 141 ALDTVKDLDEALKPWAENLSNKERSIILKEQSSWERALEIFE-WFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDE 219 (856)
Q Consensus 141 ~~~~~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~A~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 219 (856)
-.++|.|++ ...|+++|+ ||. +.|+..+|++.|+.-.+.+.++.|+.+|++
T Consensus 148 -----~ymEE~LgN-------------------i~gaRqiferW~~----w~P~eqaW~sfI~fElRykeieraR~IYer 199 (677)
T KOG1915|consen 148 -----IYMEEMLGN-------------------IAGARQIFERWME----WEPDEQAWLSFIKFELRYKEIERARSIYER 199 (677)
T ss_pred -----HHHHHHhcc-------------------cHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566776554 445999998 776 899999999999999999999999999999
Q ss_pred HHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC-CC-CccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcccc
Q 003020 220 MSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEG-GM-EPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLR 297 (856)
Q Consensus 220 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 297 (856)
.+- +.|++.+|....+.-.++|+...|..+|+.+++. |- .-+...+.++...-.++..++.|..+|+-..+
T Consensus 200 fV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld----- 272 (677)
T KOG1915|consen 200 FVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALD----- 272 (677)
T ss_pred Hhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 886 5689999999999999999999999999999875 21 12345677777777789999999999998764
Q ss_pred CCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHH--------HHHHHHCCCCCCHHhHHHHHHHHhcC
Q 003020 298 HGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASET--------FAQMLREGIVPTTVTFNTMIHIYGNN 369 (856)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~g~~p~~~~~~~ll~~~~~~ 369 (856)
+.+.......|..+...--+.|+.....+. |+.+++.+. -|..+|...+......
T Consensus 273 ----------------~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~ 335 (677)
T KOG1915|consen 273 ----------------HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESV 335 (677)
T ss_pred ----------------hcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhc
Confidence 222223356777777777777776544433 566666543 4788999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHH--------ccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH--
Q 003020 370 DQLAEVDSLIKKMEELHCPPDT--RTYNILIFLHA--------KNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYS-- 437 (856)
Q Consensus 370 g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~--------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~-- 437 (856)
|+.+...++|++++ .++||-. ..|...|..+. ...+++.+.++|+..++. ++...+||..+...|+
T Consensus 336 g~~~~Ire~yErAI-anvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~f 413 (677)
T KOG1915|consen 336 GDKDRIRETYERAI-ANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQF 413 (677)
T ss_pred CCHHHHHHHHHHHH-ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHH
Confidence 99999999999999 5667632 34444443332 468899999999999984 6677888888877776
Q ss_pred --hcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHH
Q 003020 438 --IRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAE 515 (856)
Q Consensus 438 --~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 515 (856)
++.+...|.+++...+ |..|-..++...+..-.+.+++|.+..+|++.+.-+|.+..+|...+..-...|+.+.|.
T Consensus 414 eIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 414 EIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHH
Confidence 6789999999999887 678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003020 516 RAFICCQEGKKLT--VLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQ 572 (856)
Q Consensus 516 ~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 572 (856)
.+|+.+...+..+ ...|.+.|+.-...|.++.|..+|+++++.. +...+|-++..
T Consensus 492 aifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~ 548 (677)
T KOG1915|consen 492 AIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAK 548 (677)
T ss_pred HHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHH
Confidence 9999999877554 6789999999999999999999999999862 23334544443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-26 Score=228.93 Aligned_cols=455 Identities=16% Similarity=0.118 Sum_probs=379.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003020 324 YNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAK 403 (856)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 403 (856)
-..|..-..+.|++.+|++.-...-+.+.. +......+-..+....+++....--....+.. +.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 455677778999999999988776655422 33344445566667677776655544444333 4567899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHh-hHHHHHHHHHHcCChHHHHH
Q 003020 404 NDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEY-TQSALTRMYIEAGMLEKSWL 482 (856)
Q Consensus 404 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~ 482 (856)
.|++++|+.+|+.+.+.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+.. ..+.+.......|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 999999999999999865 246789999999999999999999999999875 45544 45566777778999999999
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 003020 483 WFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVP 562 (856)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 562 (856)
.|.+.....|.-..+|..++-.+..+|+...|+..|+++....|.-..+|..++.+|...+.+++|+..|.+.... +|
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998764 45
Q ss_pred C-HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003020 563 D-KCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLI 641 (856)
Q Consensus 563 ~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 641 (856)
+ ...+..+...|..+|..|.|+..+++.++.... =...|+.|..++-..|+..+|+..|++.+... +.-..+.+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 4 566778888889999999999999999886422 24679999999999999999999999999864 23566888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCH
Q 003020 642 NAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDV-YTSNCMIDLYSERSMV 720 (856)
Q Consensus 642 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 720 (856)
..|...|++++|..+|....+.. +--....+.|...|-++|++++|+..|++.++ ++|+. ..|+.++..|-..|+.
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhH
Confidence 99999999999999999998753 33457789999999999999999999999987 66774 4789999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003020 721 RQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKD 791 (856)
Q Consensus 721 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 791 (856)
+.|+..+.+++..+|.-..+.+.|+..|...|+..+|+.-|+++++..|. .+..|.+++.++---.+|.+
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD-fpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD-FPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC-CchhhhHHHHHHHHHhcccc
Confidence 99999999999988888889999999999999999999999999998876 66778777776655444444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-23 Score=219.79 Aligned_cols=625 Identities=14% Similarity=0.075 Sum_probs=463.4
Q ss_pred HHHhcCCHHHHHHHHHHhHHcC-----CCCCCH-HHHHHHHHHHHcc-----------CCHHHHHHHHHHHHhCCCCcCh
Q 003020 167 ILKEQSSWERALEIFEWFKRQE-----CHELNV-IHYNIMLRTLGKA-----------RKWSYVQSLWDEMSVKGIVPIN 229 (856)
Q Consensus 167 ~l~~~~~~~~A~~~~~~~~~~~-----~~~~~~-~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~ 229 (856)
-|..+|+.++.+.+.+...... ..+.+. ..++.+...+... ..+..|..+|+..-..... ..
T Consensus 50 eYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ki~m~-~~ 128 (1018)
T KOG2002|consen 50 EYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADKIDMY-ED 128 (1018)
T ss_pred HHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHHhhcc-Cc
Confidence 3556788888888887665111 011111 2233333333222 1234555566554443222 22
Q ss_pred hhHHHHHHHHHcCCC--HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhh
Q 003020 230 STYGTLIDVCSKGGL--KEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIG 307 (856)
Q Consensus 230 ~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 307 (856)
..+..-...|...|. ++.|...|...++.. +++...+-.-.......+++-.|+.+|..+...
T Consensus 129 ~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~i-------------- 193 (1018)
T KOG2002|consen 129 SHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRI-------------- 193 (1018)
T ss_pred chhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhc--------------
Confidence 222222333444444 589999999998874 234433333333344678999999999997532
Q ss_pred hhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc---CCCHHHHHHHHHHHHh
Q 003020 308 KVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGN---NDQLAEVDSLIKKMEE 384 (856)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~ 384 (856)
.+...+|+. -.+..++.+.|+.+.|+..|.+.++.++ -++.++..|...-.. ...+..+..++...-.
T Consensus 194 ------np~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~ 264 (1018)
T KOG2002|consen 194 ------NPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYK 264 (1018)
T ss_pred ------CcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh
Confidence 233333332 2345778899999999999999998643 133444444333222 3345677777777765
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHh
Q 003020 385 LHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLE--PDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEY 462 (856)
Q Consensus 385 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 462 (856)
.+ +.|+.+.+.|...|.-.|+++.++.+...+...... --..+|..+.++|-..|++++|...|.+..+.....-..
T Consensus 265 ~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l 343 (1018)
T KOG2002|consen 265 EN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL 343 (1018)
T ss_pred hc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc
Confidence 54 568889999999999999999999999988864321 124568889999999999999999999998765433345
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcC----CHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 003020 463 TQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERG----HVLEAERAFICCQEGKKLTVLVFNVMVKA 538 (856)
Q Consensus 463 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 538 (856)
.+..++++|...|+++.+...|+++....|...++...++..|...+ ..+.|..+..+..+..+.+...|-.+...
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 66788999999999999999999999999999999999999998886 67888888889988889999999999999
Q ss_pred HHccCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc---CCCCCh------HhHHHH
Q 003020 539 YGMGRNYDKACNLFDSMT----SHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEA---GLVSDC------IPYCAV 605 (856)
Q Consensus 539 ~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~~~------~~~~~l 605 (856)
+....-+.. +..|.... ..+-.+.+...|.+.......|.++.|...|...... ...+|. .+--.+
T Consensus 424 ~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 877665554 77766544 4455678889999999999999999999999998765 122222 234445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003020 606 ISSYMKLGQLEMAEEVYKDMIRFNVEPD-VVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGY 684 (856)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 684 (856)
...+...++++.|.++|..+++.. |. +..|-.++......+...+|...++...+.+ ..++..++.++..+.+...
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 667777889999999999999863 44 3355555534445678899999999998865 6677888888999999999
Q ss_pred HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 003020 685 LKEAQETYKLLRSL-EASPDVYTSNCMIDLYSE------------RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN 751 (856)
Q Consensus 685 ~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 751 (856)
+..|.+-|....+. ...+|.++...|+..|.+ .+.+++|+++|.++++..|.|..+-+.++.+++..
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEK 659 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhc
Confidence 99999988777662 223688877778876642 34578999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcC
Q 003020 752 GRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQP-DDFTFKSLGAVLMKCG 822 (856)
Q Consensus 752 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~G 822 (856)
|++.+|..+|.++.+.... ...+|.+++.+|..+|+|..|+++|+...+.-.+. +......|..++.+.|
T Consensus 660 g~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred cCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 9999999999999998664 67899999999999999999999999988864444 4556999999999999
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-26 Score=228.93 Aligned_cols=447 Identities=15% Similarity=0.140 Sum_probs=381.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 003020 359 FNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSI 438 (856)
Q Consensus 359 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 438 (856)
...|..-..+.|++.+|++.-...-..+ +.+....-.+-..+.+..+++.....-....+. .+.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 4556666678899999998877665443 223333333346666766776655544443333 23467899999999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHH
Q 003020 439 RRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAF 518 (856)
Q Consensus 439 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 518 (856)
.|++++|+.+|+.+++...+ ....|..+..++...|+.+.|...|...+..+|....+...++..+...|+.++|...|
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 99999999999999986433 56789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC
Q 003020 519 ICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPD-KCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVS 597 (856)
Q Consensus 519 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~ 597 (856)
.++.+..+--..+|..+...+..+|+...|++.|++..+. .|+ ...|-.|...|...+.++.|...+.++.... +.
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn 284 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN 284 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence 9999988888999999999999999999999999999875 555 4679999999999999999999999988754 23
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003020 598 DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPD-VVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLI 676 (856)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 676 (856)
...++..+...|..+|..+-|+..|++.++. .|+ ...|+.|..++-..|++.+|..+|++.+... +......+.|+
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLg 361 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLG 361 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 4566888888999999999999999999986 455 5699999999999999999999999998864 55668899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHH
Q 003020 677 KLYTKVGYLKEAQETYKLLRSLEASPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFE 755 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 755 (856)
..|...|.+++|..+|....+ +.|. ....+.|...|.++|++++|+.-++++++..|.-..+|+.++..|...|+.+
T Consensus 362 ni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 999999999999999999988 4465 4578899999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH
Q 003020 756 EATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF-TFKSLGAVLM 819 (856)
Q Consensus 756 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~ 819 (856)
.|++.|.+++..+|. -...+++|+.+|-..|+..+|++-|++.++ ++||.. .|..++.++.
T Consensus 440 ~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 999999999998876 678999999999999999999999999998 688854 3555555543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-20 Score=214.13 Aligned_cols=435 Identities=13% Similarity=0.025 Sum_probs=234.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003020 322 YTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLH 401 (856)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 401 (856)
..+...+..+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|+..+...++.+ +.+..+|..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34556677777777777777777777653 4566677777777777777777777777777654 44556677777777
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHH
Q 003020 402 AKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSW 481 (856)
Q Consensus 402 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 481 (856)
...|++++|+..|......+. .+......++..+.. ..+.......++.... +......+.. +......+...
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcch
Confidence 777777777777765544321 111111111111111 1222222222222111 1111111111 11111111111
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-C
Q 003020 482 LWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHG-A 560 (856)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~ 560 (856)
.-+.......+.....+..++..+. -....+++++|++.|++..+.+ .
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~-------------------------------e~~~~~~y~~A~~~~~~al~~~~~ 326 (615)
T TIGR00990 278 AGLEDSNELDEETGNGQLQLGLKSP-------------------------------ESKADESYEEAARAFEKALDLGKL 326 (615)
T ss_pred hhhhcccccccccccchHHHHHHHH-------------------------------HhhhhhhHHHHHHHHHHHHhcCCC
Confidence 1111111111111111111110000 0022345666666666666543 1
Q ss_pred CC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003020 561 VP-DKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGV 639 (856)
Q Consensus 561 ~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 639 (856)
.| ....+..+...+...|++++|+..+++.++.. +.....|..+...+...|++++|+..|+++++.. +.+...|..
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~ 404 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYH 404 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 22 23445555556666666666666666666543 2234456666666666677777777777666653 234556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003020 640 LINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSM 719 (856)
Q Consensus 640 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 719 (856)
+...+...|++++|+..|++.++.. |.+...+..++.++.+.|++++|+..|++..+.. +.+...++.++.++...|+
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~ 482 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNK 482 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccC
Confidence 6666666777777777777766653 4455566666666667777777777776666532 1234556666666677777
Q ss_pred HHHHHHHHHHHHhCCCCCHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003020 720 VRQAEEIFEIMKKKGDANEFTY-------AMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDV 792 (856)
Q Consensus 720 ~~~A~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 792 (856)
+++|++.|+++....|.+...+ ...+..+...|++++|+++++++++.+|. +...+..++.++.+.|++++|
T Consensus 483 ~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 7777777777666554322111 11122223356777777777777776655 555667777777777777777
Q ss_pred HHHHHHHHHc
Q 003020 793 IGTFKDMVNA 802 (856)
Q Consensus 793 ~~~~~~~~~~ 802 (856)
+..|++..+.
T Consensus 562 i~~~e~A~~l 571 (615)
T TIGR00990 562 LKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHH
Confidence 7777776663
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-20 Score=209.87 Aligned_cols=427 Identities=13% Similarity=0.038 Sum_probs=275.0
Q ss_pred ccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHH
Q 003020 296 LRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEV 375 (856)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A 375 (856)
....++...++..++...... |+...|..+..+|.+.|++++|++.+++.++.+. .+...|..+..++...|++++|
T Consensus 137 ~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg~~~eA 213 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLGKYADA 213 (615)
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 344566788888888766544 4678899999999999999999999999998642 2566899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 003020 376 DSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGG 455 (856)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 455 (856)
..-|..+...+.. +......++..... ..+........+.. +++..++..+.. |........+..-+....+.
T Consensus 214 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 214 LLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred HHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhccccc
Confidence 9998877654322 22222222222211 22333333333332 233333333332 22222222222222222111
Q ss_pred CCCCCH-hhHHHHHHHH---HHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHH
Q 003020 456 GLEIDE-YTQSALTRMY---IEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLV 531 (856)
Q Consensus 456 ~~~p~~-~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 531 (856)
.+.. ..+..+...+ ...+.+++|...|++....+. ..+.....
T Consensus 287 --~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~-------------------------------~~~~~a~a 333 (615)
T TIGR00990 287 --DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK-------------------------------LGEKEAIA 333 (615)
T ss_pred --ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC-------------------------------CChhhHHH
Confidence 1111 1111111111 112455555555555543221 01223445
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 003020 532 FNVMVKAYGMGRNYDKACNLFDSMTSHGAVP-DKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYM 610 (856)
Q Consensus 532 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 610 (856)
|+.++..+...|++++|+..|++.++. .| ...+|..+...+...|++++|...++++++.. +.+..++..+...+.
T Consensus 334 ~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~ 410 (615)
T TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHF 410 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 555666666666666666666666554 23 24455566666666666666666666666543 335667777788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003020 611 KLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQE 690 (856)
Q Consensus 611 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 690 (856)
..|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..|++.++.. |.+...++.++.++...|++++|++
T Consensus 411 ~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 411 IKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHH
Confidence 8888888888888888764 3356677788888888999999999999888753 5567888888999999999999999
Q ss_pred HHHHHHhCCCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003020 691 TYKLLRSLEASPDVY------TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQM 764 (856)
Q Consensus 691 ~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 764 (856)
.|++..+.....+.. .++..+..+...|++++|.++++++....|.+..++..++.++...|++++|++.|+++
T Consensus 489 ~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 489 KFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999888743221111 12222233445699999999999999988888889999999999999999999999999
Q ss_pred HHcCCC
Q 003020 765 RESGLI 770 (856)
Q Consensus 765 ~~~~~~ 770 (856)
.+....
T Consensus 569 ~~l~~~ 574 (615)
T TIGR00990 569 AELART 574 (615)
T ss_pred HHHhcc
Confidence 987544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-19 Score=208.60 Aligned_cols=425 Identities=11% Similarity=-0.016 Sum_probs=265.5
Q ss_pred CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 003020 355 TTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLY 434 (856)
Q Consensus 355 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 434 (856)
+.......+.+....|+.++|++++.+..... +.+...+..+...+.+.|++++|.++|++.++.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34444455555566666666666666665422 3444456666666666666666666666665542 233444555555
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHH
Q 003020 435 AYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEA 514 (856)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 514 (856)
.+...|++++|+..++++++..+. +.. +..+..++...|+.++|+..++++....|.+...+..++..+...+..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 666666666666666666554221 233 555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----cCCCh---HHHHHH
Q 003020 515 ERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILA-----GADLP---HMAKRY 586 (856)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-----~~~~~---~~A~~~ 586 (856)
++.++.... .| +. ...+ .......++.... ..+++ ++|+..
T Consensus 170 l~~l~~~~~-~p-~~----------------~~~l-------------~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 170 LGAIDDANL-TP-AE----------------KRDL-------------EADAAAELVRLSFMPTRSEKERYAIADRALAQ 218 (765)
T ss_pred HHHHHhCCC-CH-HH----------------HHHH-------------HHHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence 544443332 11 00 0000 0000111111111 11222 566667
Q ss_pred HHHHHHc-CCCCChH-hH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 587 LRKMQEA-GLVSDCI-PY----CAVISSYMKLGQLEMAEEVYKDMIRFNVE-PDVVVYGVLINAFADVGNVKQAQSYFDA 659 (856)
Q Consensus 587 ~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (856)
++.+.+. ...|+.. .+ ...+..+...|++++|+..|+++++.+.+ |+. ....+..+|...|++++|+..|++
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 7776654 1122211 11 11123345668888888888888876532 332 222246678888889999998888
Q ss_pred HHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHHcCCHHH
Q 003020 660 MESAGLPP---NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEA-----------SPD---VYTSNCMIDLYSERSMVRQ 722 (856)
Q Consensus 660 ~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~ 722 (856)
+.+..... .......+..++...|++++|...++.+.+... .|+ ...+..++..+...|++++
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 87643111 134556667778888999999988888876421 123 2345567778889999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 723 AEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 723 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
|++.++++....|.++..+..++.++...|++++|++.++++++..|. +...+...+..+...|++++|..+++++++.
T Consensus 378 A~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 378 AEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999887 7888899999999999999999999999984
Q ss_pred CCCCCHHHHHHHHHHH
Q 003020 803 AIQPDDFTFKSLGAVL 818 (856)
Q Consensus 803 g~~p~~~~~~~l~~~~ 818 (856)
.|+......+-..+
T Consensus 457 --~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 457 --EPQDPGVQRLARAR 470 (765)
T ss_pred --CCCCHHHHHHHHHH
Confidence 78877655555444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=212.10 Aligned_cols=329 Identities=13% Similarity=0.084 Sum_probs=262.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc
Q 003020 500 ANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPD---KCSYNSLIQILAG 576 (856)
Q Consensus 500 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~ 576 (856)
..+..+...|++++|...|.++.+..|.+..++..++..+...|++++|..+++.+...+..++ ..++..++..+..
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3355566778888888888888888777888888889999999999999999998887532222 2457788888999
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHH
Q 003020 577 ADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDV----VVYGVLINAFADVGNVKQ 652 (856)
Q Consensus 577 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~ 652 (856)
.|+++.|..+|.++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999988753 456778899999999999999999999999886544322 245667778889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003020 653 AQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKK 732 (856)
Q Consensus 653 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 732 (856)
|...|+++.+.. +.+...+..++..+.+.|++++|.++|+++.+.+......++..++.+|...|++++|...++++.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 4566788889999999999999999999998754323345678899999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 733 KGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAV---DGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 733 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
..|.+ ..+..++..+.+.|++++|.++++++++.. |+...+..++..+.. .|+.++++.++++|++.+++|++.
T Consensus 278 ~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGA-DLLLALAQLLEEQEGPEAAQALLREQLRRH--PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 86654 455889999999999999999999999875 566778777766664 569999999999999988887776
Q ss_pred HHHHHHHHHHHcCHHHHHhhcchhhHHHHH
Q 003020 810 TFKSLGAVLMKCGLELTRKKNAQSGLQAWM 839 (856)
Q Consensus 810 ~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~ 839 (856)
..|.++|+-...-.+..|..+.|-
T Consensus 355 ------~~c~~cg~~~~~~~~~c~~c~~~~ 378 (389)
T PRK11788 355 ------YRCRNCGFTARTLYWHCPSCKAWE 378 (389)
T ss_pred ------EECCCCCCCCccceeECcCCCCcc
Confidence 447778843333344455544443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-19 Score=204.29 Aligned_cols=335 Identities=7% Similarity=-0.060 Sum_probs=219.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcC
Q 003020 430 RTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERG 509 (856)
Q Consensus 430 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 509 (856)
..++..+.+.|++++|+.+++..+...+. +...+..++......|++++|...++++....|.+..++..++..+...|
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 34455566666666666666666655433 23344444455556677777777777777767777777777777777777
Q ss_pred CHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 003020 510 HVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRK 589 (856)
Q Consensus 510 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~ 589 (856)
++++|+..|+++....|.+...+..++.++...|++++|...++.+...... +...+..+ ..+...|++++|...++.
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 7777777777777766667777777777777777777777777766554222 22222222 335667777777777777
Q ss_pred HHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCC
Q 003020 590 MQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQ----AQSYFDAMESAGL 665 (856)
Q Consensus 590 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~ 665 (856)
+++....++...+..+...+...|++++|+..|+++++.. +.+...+..+...+...|++++ |...|+++....
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 6665433334444455566677777777777777777654 3356666677777777777764 677777777653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003020 666 PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMML 745 (856)
Q Consensus 666 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 745 (856)
|.+...+..++..+...|++++|+..++++.+... .+...+..+..++...|++++|+..++++....|.+...+..++
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 44566777777777777777777777777776432 23445556677777777777777777777776666655555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 746 IMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 746 ~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.++...|++++|+..|+++++..|.
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhChh
Confidence 6777777777777777777776555
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-19 Score=206.43 Aligned_cols=335 Identities=10% Similarity=0.032 Sum_probs=292.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Q 003020 462 YTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGM 541 (856)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 541 (856)
.-...++..+.+.|+.++|..+++.+....|...+++..++......|++++|+..|+++....|.+...+..+...+..
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34555677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 003020 542 GRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEV 621 (856)
Q Consensus 542 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 621 (856)
.|++++|+..|+++.+.. +.+...+..++.++...|++++|...++.+...... +...+..+ ..+...|++++|+..
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999999862 335677888999999999999999999988776533 33334333 347889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHh
Q 003020 622 YKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKE----AQETYKLLRS 697 (856)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~ 697 (856)
++.+++....++...+..+..++...|++++|...++++.... +.+...+..++.++...|++++ |+..|+++.+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9999876544455566666788899999999999999999875 6678888999999999999986 8999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003020 698 LEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYN 777 (856)
Q Consensus 698 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 777 (856)
..+ .+...+..++..+...|++++|+..++++....|.++.++..++.++...|++++|+..++++.+.+|. ++..+.
T Consensus 279 l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~ 356 (656)
T PRK15174 279 FNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNR 356 (656)
T ss_pred hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHH
Confidence 542 356788899999999999999999999999999999999999999999999999999999999998876 555566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 778 NVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 778 ~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
.++.++...|++++|+..|+++++.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6788999999999999999999884
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-19 Score=205.49 Aligned_cols=425 Identities=13% Similarity=0.044 Sum_probs=305.8
Q ss_pred CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003020 316 NGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYN 395 (856)
Q Consensus 316 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 395 (856)
..+.++..-.-.+......|+.++|++++.+..... ..+...+..+..++.+.|++++|..++++.++.. |.+...+.
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~ 87 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQR 87 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 344556666667777889999999999999998632 3345578999999999999999999999998764 55677888
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcC
Q 003020 396 ILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAG 475 (856)
Q Consensus 396 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 475 (856)
.++.++...|++++|+..+++..+.. +.+.. +..+..++...|+.++|+..++++++..+. +...+..++.++...+
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 88899999999999999999998864 34556 888999999999999999999999987543 5556667888888899
Q ss_pred ChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCH---HHHHHHH
Q 003020 476 MLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNY---DKACNLF 552 (856)
Q Consensus 476 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~ 552 (856)
..+.|+..++++.. .|.... .+ ....+.... ...+.......+++ ++|+..+
T Consensus 165 ~~e~Al~~l~~~~~-~p~~~~---~l--------~~~~~~~~~-------------r~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 165 LSAPALGAIDDANL-TPAEKR---DL--------EADAAAELV-------------RLSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred ChHHHHHHHHhCCC-CHHHHH---HH--------HHHHHHHHH-------------HhhcccccChhHHHHHHHHHHHHH
Confidence 99999999887664 221000 00 000000000 00000111112223 6677777
Q ss_pred HHHHhC-CCCCCHH-HHH----HHHHHHHcCCChHHHHHHHHHHHHcCCC-CChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 553 DSMTSH-GAVPDKC-SYN----SLIQILAGADLPHMAKRYLRKMQEAGLV-SDCIPYCAVISSYMKLGQLEMAEEVYKDM 625 (856)
Q Consensus 553 ~~m~~~-~~~p~~~-~~~----~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (856)
+.+.+. ...|+.. .+. ..+.++...|++++|+..|+.+++.+.+ |+. ....+...|...|++++|+..|+++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 777643 1122211 111 1133445667888888888887776532 221 2222466788888888888888887
Q ss_pred HHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHH
Q 003020 626 IRFNVEP---DVVVYGVLINAFADVGNVKQAQSYFDAMESAGL-----------PPN---AVIYNSLIKLYTKVGYLKEA 688 (856)
Q Consensus 626 ~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~A 688 (856)
.+..... .......+..++...|++++|..+++.+..... .|+ ...+..+...+...|++++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 7643221 134455566677888888888888888876421 123 23456777888899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003020 689 QETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESG 768 (856)
Q Consensus 689 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 768 (856)
++.++++....+ .+...+..++..+...|++++|++.++++....|.+...+..++..+...|++++|+++++++++..
T Consensus 379 ~~~l~~al~~~P-~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 379 EMRARELAYNAP-GNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999887542 4467788889999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCH
Q 003020 769 LISDL 773 (856)
Q Consensus 769 ~~p~~ 773 (856)
|. ++
T Consensus 458 Pd-~~ 461 (765)
T PRK10049 458 PQ-DP 461 (765)
T ss_pred CC-CH
Confidence 76 54
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-15 Score=157.47 Aligned_cols=618 Identities=12% Similarity=0.043 Sum_probs=471.3
Q ss_pred CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHH
Q 003020 173 SWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWL 252 (856)
Q Consensus 173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 252 (856)
+...|+-++....+.++.+| ..|-+-.+.--..|++..|..+..+--+. ++-+...|.-.+ +....+.|..+.
T Consensus 266 DikKaR~llKSvretnP~hp--~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETNPKHP--PGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHhcCCCCC--chHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHHH
Confidence 66778888888888764444 44555556666678888888877654443 222555665444 445566677777
Q ss_pred HHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHH
Q 003020 253 ERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYG 332 (856)
Q Consensus 253 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (856)
-.++..-+. .+..|-..... ..+...=.+++.+.++ ..+.++..|...+
T Consensus 339 A~Avr~~P~-Sv~lW~kA~dL---E~~~~~K~RVlRKALe-----------------------~iP~sv~LWKaAV---- 387 (913)
T KOG0495|consen 339 ANAVRFLPT-SVRLWLKAADL---ESDTKNKKRVLRKALE-----------------------HIPRSVRLWKAAV---- 387 (913)
T ss_pred HHHHHhCCC-ChhhhhhHHhh---hhHHHHHHHHHHHHHH-----------------------hCCchHHHHHHHH----
Confidence 777665221 22222222211 1122233344554432 2233556665544
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 003020 333 KAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASR 412 (856)
Q Consensus 333 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 412 (856)
.....++|.-++.+..+. ++.+.. |.-++.+..-|+.|..++....+ .+|.+...|.+-...--.+|+.+...+
T Consensus 388 elE~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred hccChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 456677799999988875 332333 34456677788999999999884 467788888888888888999998888
Q ss_pred HHHHH----HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--HhhHHHHHHHHHHcCChHHHHHHHHH
Q 003020 413 YFWKM----KEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEID--EYTQSALTRMYIEAGMLEKSWLWFRR 486 (856)
Q Consensus 413 ~~~~m----~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~ 486 (856)
+.++- ...|+..+...|..=...|-+.|..--+..+....+..|+.-. ..|+..-...|.+.+.++-++.+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 87654 4578888888898888888888988888888888888776543 35888889999999999999999999
Q ss_pred HHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 003020 487 FHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCS 566 (856)
Q Consensus 487 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 566 (856)
++...|.....|...+..--..|..++-..+|.++....|.....|......+-..|+...|..++....+.... +...
T Consensus 542 alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seei 620 (913)
T KOG0495|consen 542 ALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEI 620 (913)
T ss_pred HHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHH
Confidence 999999999999999999999999999999999999998888999999999999999999999999998886332 6677
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 003020 567 YNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDV-VVYGVLINAFA 645 (856)
Q Consensus 567 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 645 (856)
+-..+.......+++.|..+|.+.... .++..+|.--+....-.++.++|.+++++.++. -|+. ..|..+...+-
T Consensus 621 wlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHH
Confidence 888888888999999999999998875 466677776666667788999999999999885 4554 48888888899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 646 DVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEE 725 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 725 (856)
+.++.+.|...|..-.+. +|..+..|-.+.+.-.+.|.+-.|..++++..-.++ .+...|...+++-.+.|+.+.|..
T Consensus 697 ~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHH
Confidence 999999999988877665 456667888888888889999999999998876553 567788899999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003020 726 IFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQ 805 (856)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 805 (856)
+..++++..|.+...|.--+....+.++-...+..+++.. -|+...-.++..+....+++.|.+.|.+.++. .
T Consensus 775 lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce-----~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d 847 (913)
T KOG0495|consen 775 LMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-----HDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--D 847 (913)
T ss_pred HHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhcc-----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--C
Confidence 9999999889999999888888888887666666555543 37788888999999999999999999999884 6
Q ss_pred CCH-HHHHHHHHHHHHcC----HHHHHhhcchhhH---HHHHHHHhhHhhh
Q 003020 806 PDD-FTFKSLGAVLMKCG----LELTRKKNAQSGL---QAWMSTLSSVIEE 848 (856)
Q Consensus 806 p~~-~~~~~l~~~~~~~G----~~~~~~~~~~~~~---~~~~~~~~~~~~~ 848 (856)
||. .+|..+.......| ..++.++.....| ..|.++..++...
T Consensus 848 ~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i~n~ 898 (913)
T KOG0495|consen 848 PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDIKNW 898 (913)
T ss_pred CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhHHhc
Confidence 665 56888888888999 5556666655444 4677776665544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-16 Score=168.98 Aligned_cols=609 Identities=13% Similarity=0.073 Sum_probs=415.6
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHH
Q 003020 167 ILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKE 246 (856)
Q Consensus 167 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 246 (856)
.+...|++++|..++..+.++. +.+...|-.|...|-.+|+.+.+...|-.+.-.++. |..-|..+.....+.|+++
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHH
Confidence 3555699999999999999885 667788999999999999999999988766665555 7789999999999999999
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHh----
Q 003020 247 EAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSY---- 322 (856)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 322 (856)
+|.-.|.++++..+ ++....---...|.+.|+...|..-|.++... .++.|..
T Consensus 225 qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~----------------------~p~~d~er~~d 281 (895)
T KOG2076|consen 225 QARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQL----------------------DPPVDIERIED 281 (895)
T ss_pred HHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhh----------------------CCchhHHHHHH
Confidence 99999999999853 34445555677889999999999999988632 1111222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCC--------------
Q 003020 323 TYNTLIDTYGKAGQLKEASETFAQMLREG-IVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHC-------------- 387 (856)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------------- 387 (856)
.--.+++.+...++.+.|.+.++.....+ -..+...++.++..+.+...++.|......+.....
T Consensus 282 ~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~ 361 (895)
T KOG2076|consen 282 LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRR 361 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcc
Confidence 22234566777788889999888877632 123445677888888888888888888777665211
Q ss_pred -------------CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 388 -------------PPDTRTYNILIFLHAKNDKISMASRYFWKMKEAN--LEPDIVSYRTLLYAYSIRRMVCEAEELISEM 452 (856)
Q Consensus 388 -------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 452 (856)
.++..++. ++-++.+....+....+...+.+.. +.-+...|.-+..+|...|++.+|+.+|..+
T Consensus 362 ~~~~~~~~~~~~~s~~l~v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i 440 (895)
T KOG2076|consen 362 EEPNALCEVGKELSYDLRVIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI 440 (895)
T ss_pred ccccccccCCCCCCccchhHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 12222211 1222333333344444444444444 3445678889999999999999999999999
Q ss_pred hcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCC-------
Q 003020 453 DGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGK------- 525 (856)
Q Consensus 453 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------- 525 (856)
......-+...|-.++.+|...|.+++|.+.|++++...|.+.++...+...+.+.|+.++|.+.+..+...+
T Consensus 441 ~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~ 520 (895)
T KOG2076|consen 441 TNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEAC 520 (895)
T ss_pred hcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhc
Confidence 9876666788999999999999999999999999999999999999999999999999999999998855332
Q ss_pred --CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----CCC-----------------CHHHHHHHHHHHHcCCChH
Q 003020 526 --KLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHG-----AVP-----------------DKCSYNSLIQILAGADLPH 581 (856)
Q Consensus 526 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p-----------------~~~~~~~ll~~~~~~~~~~ 581 (856)
.+...+.-...+.+.+.|+.++-+.+-..|+... +-| ...+...++.+-.+.++..
T Consensus 521 a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 600 (895)
T KOG2076|consen 521 AWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDN 600 (895)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchH
Confidence 2334455566777888888887666555544321 111 1112222333333333222
Q ss_pred HHHHHHH------HHHHcCCCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHHhcC
Q 003020 582 MAKRYLR------KMQEAGLVSDC--IPYCAVISSYMKLGQLEMAEEVYKDMIRFNV--EPDV---VVYGVLINAFADVG 648 (856)
Q Consensus 582 ~A~~~~~------~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g 648 (856)
...+-.. .....++..+. ..+.-++.++++.+++++|+.+...+..... .++. ..-...+.+.+..+
T Consensus 601 ~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~ 680 (895)
T KOG2076|consen 601 VMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYAR 680 (895)
T ss_pred HhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcC
Confidence 1111111 11111222121 2345667788999999999999999886432 1222 22344566777899
Q ss_pred CHHHHHHHHHHHHHC-CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003020 649 NVKQAQSYFDAMESA-GL---PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAE 724 (856)
Q Consensus 649 ~~~~A~~~~~~~~~~-~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 724 (856)
++..|.+.++.|... +. +.-...|+...+...+.|+-.--.+.+..+.......+...+..-+.-....+.+.-|+
T Consensus 681 d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al 760 (895)
T KOG2076|consen 681 DPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHAL 760 (895)
T ss_pred CHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHH
Confidence 999999999999764 11 12234566556666666554333344333333222222333323344456778899999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 003020 725 EIFEIMKKKGDANEFTYAMMLIMYKRN----------GRFEEATRIAKQMRESGLI-SDLLSYNNVLGLYAVDGRFKDVI 793 (856)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~ 793 (856)
..+-++....|.+|.+-..|+.++... -..-.++.++++..+.... -...++++++++|-..|-..-|+
T Consensus 761 ~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~ 840 (895)
T KOG2076|consen 761 QEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAV 840 (895)
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHH
Confidence 999999888888887666665554321 1234566666666665322 13478999999999999999999
Q ss_pred HHHHHHHHc
Q 003020 794 GTFKDMVNA 802 (856)
Q Consensus 794 ~~~~~~~~~ 802 (856)
.+|++.++.
T Consensus 841 ~YYekvL~~ 849 (895)
T KOG2076|consen 841 SYYEKVLEV 849 (895)
T ss_pred HHHHHHhCC
Confidence 999999984
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-17 Score=184.72 Aligned_cols=461 Identities=10% Similarity=-0.001 Sum_probs=317.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003020 323 TYNTLIDTYGKAGQLKEASETFAQMLREGIVPTT--VTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFL 400 (856)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 400 (856)
.|...| ...+.|+++.|++.|++.++.. |+. ..+ .++..+...|+.++|+..+++.... .+........+...
T Consensus 37 ~y~~ai-i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~l 111 (822)
T PRK14574 37 QYDSLI-IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARA 111 (822)
T ss_pred HHHHHH-HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHH
Confidence 344444 3558999999999999998864 443 234 8888888889999999999998821 12233344444668
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHH
Q 003020 401 HAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKS 480 (856)
Q Consensus 401 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 480 (856)
+...|++++|+++|+++.+..+ .+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHH
Confidence 8888999999999999998753 34667777788889999999999999999875 34455555555555556666668
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 003020 481 WLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGA 560 (856)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 560 (856)
+..++++....|.+.+.+..+...+.+.|-...|.+....-.....+....+- +.+.|.+..+.. .
T Consensus 189 L~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l----------~~~~~a~~vr~a----~ 254 (822)
T PRK14574 189 LQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL----------ERDAAAEQVRMA----V 254 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH----------HHHHHHHHHhhc----c
Confidence 88888888888888888888888888888888887776654433222211110 011111111111 0
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCCChHh----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003020 561 VPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAG--LVSDCIP----YCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDV 634 (856)
Q Consensus 561 ~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 634 (856)
.++..- . .+-.-.+.|+.-++.+...- .++.... ..-.+-++...|++.++++.|+.+...+.+...
T Consensus 255 ~~~~~~-~------~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~ 327 (822)
T PRK14574 255 LPTRSE-T------ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD 327 (822)
T ss_pred cccccc-h------hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH
Confidence 010000 0 00001233444444444321 1111111 122334566777888888888888876655455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------
Q 003020 635 VVYGVLINAFADVGNVKQAQSYFDAMESAG-----LPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEA--------- 700 (856)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------- 700 (856)
.+-..+.++|...+++++|..+|+.+.... .+++......|.-++...+++++|..+++.+.+...
T Consensus 328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~ 407 (822)
T PRK14574 328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP 407 (822)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC
Confidence 567778888888888888888888876532 122333456777888888888888888888776211
Q ss_pred ----CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 701 ----SPDV-YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLS 775 (856)
Q Consensus 701 ----~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 775 (856)
.||- ..+..++..+.-.|++.+|++.++++....|.|...+..++.++...|++.+|++.++.+....|. +..+
T Consensus 408 ~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~ 486 (822)
T PRK14574 408 GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLIL 486 (822)
T ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHH
Confidence 1222 234456677888999999999999999999999999999999999999999999999998888877 7888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003020 776 YNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLG 815 (856)
Q Consensus 776 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 815 (856)
....+.++...|+|++|..+.++.++. .|+...-..|-
T Consensus 487 ~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l~ 524 (822)
T PRK14574 487 ERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQELD 524 (822)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHHH
Confidence 899999999999999999999998884 77766544433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-19 Score=193.70 Aligned_cols=297 Identities=16% Similarity=0.104 Sum_probs=206.4
Q ss_pred HcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHccCCHHHH
Q 003020 473 EAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLT----VLVFNVMVKAYGMGRNYDKA 548 (856)
Q Consensus 473 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A 548 (856)
..|++++|...|+++...+|.+..++..++..+...|++++|...++.+......+ ...+..++..|...|++++|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 33444444444444444444444444444444555555555555555444432211 24566667777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 549 CNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSD----CIPYCAVISSYMKLGQLEMAEEVYKD 624 (856)
Q Consensus 549 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (856)
..+|+++.+. .+++..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|++
T Consensus 127 ~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 127 EELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7777777664 233556677777777777777777777777776543322 12355677778889999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003020 625 MIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDV 704 (856)
Q Consensus 625 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 704 (856)
+.+.. +.+...+..++..+.+.|++++|.++|+++.+.+......++..++.+|...|++++|...++++.+.. |+.
T Consensus 206 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~ 282 (389)
T PRK11788 206 ALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGA 282 (389)
T ss_pred HHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCc
Confidence 98764 335667888889999999999999999999876422224678888999999999999999999988853 565
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 705 YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR---NGRFEEATRIAKQMRESGLISDLL 774 (856)
Q Consensus 705 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 774 (856)
..+..++..+.+.|++++|..+++++.+..|. ...+..++..+.. .|+.++++.+++++++.++.|++.
T Consensus 283 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~-~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 283 DLLLALAQLLEEQEGPEAAQALLREQLRRHPS-LRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcC-HHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 66688889999999999999999999887554 4466666666554 558999999999999877666654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-16 Score=162.60 Aligned_cols=514 Identities=13% Similarity=0.037 Sum_probs=242.2
Q ss_pred HHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003020 210 WSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKK 289 (856)
Q Consensus 210 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 289 (856)
...=.+++.+.++.- +.++..|...+. ..+.+.|+.++.++++.- +... -|.-+|.+..-|+.|..++++
T Consensus 362 ~~~K~RVlRKALe~i-P~sv~LWKaAVe----lE~~~darilL~rAvecc-p~s~----dLwlAlarLetYenAkkvLNk 431 (913)
T KOG0495|consen 362 TKNKKRVLRKALEHI-PRSVRLWKAAVE----LEEPEDARILLERAVECC-PQSM----DLWLALARLETYENAKKVLNK 431 (913)
T ss_pred HHHHHHHHHHHHHhC-CchHHHHHHHHh----ccChHHHHHHHHHHHHhc-cchH----HHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555542 224444544432 234455666666666541 1111 122344455556666666665
Q ss_pred HhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHHhHHHHHHH
Q 003020 290 WSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQM----LREGIVPTTVTFNTMIHI 365 (856)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~g~~p~~~~~~~ll~~ 365 (856)
..+ ..+.+...|-+-...--.+|+.+....+.++- ...|+..+...|..=...
T Consensus 432 aRe-----------------------~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~ 488 (913)
T KOG0495|consen 432 ARE-----------------------IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEA 488 (913)
T ss_pred HHh-----------------------hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHH
Confidence 532 23334555555555555566666666555443 334666666666666666
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 003020 366 YGNNDQLAEVDSLIKKMEELHCPP--DTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVC 443 (856)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 443 (856)
|...|..-.+..+....+..|+.. -..+|+.-...+.+.+.++-|..+|...++-- +-+...|......--..|..+
T Consensus 489 ~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 489 CEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred HhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHH
Confidence 666666666666666666555432 22456666666666666666666666665532 233444544444444455566
Q ss_pred HHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhc
Q 003020 444 EAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQE 523 (856)
Q Consensus 444 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 523 (856)
+-..+|+++...-.+ ....+.....-+-..|+...|+.++.++...+|.+.+.|..-+........++.|..+|.+...
T Consensus 568 sl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 568 SLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 666666665554221 2333333444444455555555555555555555555555555555555555555555544443
Q ss_pred CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhH
Q 003020 524 GKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPD-KCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPY 602 (856)
Q Consensus 524 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 602 (856)
. .++..+|..-+...--.++.++|++++++.++. -|+ ...|..+...+-+.++.+.|...|..-.+. ++..+..|
T Consensus 647 ~-sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLW 722 (913)
T KOG0495|consen 647 I-SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLW 722 (913)
T ss_pred c-CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHH
Confidence 2 233444444444444444555555555444443 222 223333344444444444444444332221 12223334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003020 603 CAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKV 682 (856)
Q Consensus 603 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 682 (856)
..|...-.+.|.+.+|..++++..-.++ .+...|-..|..-.+.|+.+.|..++.+.++. .|.+...|..-|...-+.
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~ 800 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRP 800 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCc
Confidence 4444444444444444444444444432 24444444444444444444444444444443 233334444444443333
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003020 683 GYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAK 762 (856)
Q Consensus 683 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 762 (856)
++-..+...+++. ..|+.....+...+....++++|.+.|+++.+.+|.+..+|..+...+...|.-++-.+++.
T Consensus 801 ~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 801 QRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred ccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3333333222221 12222233333444444444444444444444444444444444444444444444444444
Q ss_pred HHHHcCC
Q 003020 763 QMRESGL 769 (856)
Q Consensus 763 ~~~~~~~ 769 (856)
+.....|
T Consensus 876 ~c~~~EP 882 (913)
T KOG0495|consen 876 KCETAEP 882 (913)
T ss_pred HHhccCC
Confidence 4444333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-15 Score=158.23 Aligned_cols=629 Identities=12% Similarity=0.022 Sum_probs=422.4
Q ss_pred cccccHHHHhhHhhhhc--C------hhHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003020 143 DTVKDLDEALKPWAENL--S------NKERSIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQ 214 (856)
Q Consensus 143 ~~~~~~~~al~~~~~~~--~------~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 214 (856)
...|+.++|...+.+.+ + ..+++.|+..+|+.++++.++-.+.... +.|...|-.+.....++|.+.+|+
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHHHHH
Confidence 34588888888887722 2 3467889999999999999888776553 566689999999999999999999
Q ss_pred HHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHH----HHHHHHHHhcCChhHHHHHHHHH
Q 003020 215 SLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTM----GIVVQMYKKAGEFQKAEEFFKKW 290 (856)
Q Consensus 215 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~g~~~~A~~~~~~~ 290 (856)
-+|.++++..+. +....-.-+..|-+.|+...|..-|.++.+..++.|-.-. -.+++.+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999998655 7777777788899999999999999999988653333322 33455666777789999998877
Q ss_pred hhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH-----------
Q 003020 291 SSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTF----------- 359 (856)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~----------- 359 (856)
... .....+...++.++..|.+..+++.|......+......+|..-+
T Consensus 307 ~s~---------------------~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 307 LSK---------------------EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred Hhh---------------------ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 531 112234467888999999999999999888887762222221111
Q ss_pred ---------------HHHHHHHhcCCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 003020 360 ---------------NTMIHIYGNNDQLAEVDSLIKKMEELHCP--PDTRTYNILIFLHAKNDKISMASRYFWKMKEANL 422 (856)
Q Consensus 360 ---------------~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 422 (856)
..+.-++.+....+....+.....+.+.. -+...|.-+..++...|++.+|+++|..+.....
T Consensus 366 ~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~ 445 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG 445 (895)
T ss_pred ccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence 12223344445555555555555555533 3556888899999999999999999999987655
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--------
Q 003020 423 EPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMS-------- 494 (856)
Q Consensus 423 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------- 494 (856)
-.+...|-.+..+|...|.+++|.+.|++.+...+. +......+...+.+.|+.++|.+.+..+...++.+
T Consensus 446 ~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~ 524 (895)
T KOG2076|consen 446 YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEP 524 (895)
T ss_pred ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccH
Confidence 566789999999999999999999999999876432 45577778888999999999999998876333221
Q ss_pred -chhhHHHHHHHhhcCCHHHHHHHHHHHhcCC-----------------------CCcHHHHHHHHHHHHccCCHHHHHH
Q 003020 495 -SEGYSANIDGYGERGHVLEAERAFICCQEGK-----------------------KLTVLVFNVMVKAYGMGRNYDKACN 550 (856)
Q Consensus 495 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------------~~~~~~~~~li~~~~~~g~~~~A~~ 550 (856)
........+.+.+.|+.++=+..-..+.... +.........+.+-.+.++.....+
T Consensus 525 e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 604 (895)
T KOG2076|consen 525 ERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEK 604 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhh
Confidence 1123445677888888877554433322210 1112222223333333332211111
Q ss_pred H------HHHHHhCCCCCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CChH----hHHHHHHHHHhcCCHHH
Q 003020 551 L------FDSMTSHGAVPDK--CSYNSLIQILAGADLPHMAKRYLRKMQEAGLV-SDCI----PYCAVISSYMKLGQLEM 617 (856)
Q Consensus 551 ~------~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~g~~~~ 617 (856)
- +.....+++..+. ..+.-++..+++.+++++|+.+...+.+...- -+.. .-...+.+.+..+++..
T Consensus 605 ~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~ 684 (895)
T KOG2076|consen 605 ALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGD 684 (895)
T ss_pred cccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHH
Confidence 1 1111122222222 23556777889999999999999988775321 1222 23455666778899999
Q ss_pred HHHHHHHHHHC-CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003020 618 AEEVYKDMIRF-NV---EPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYK 693 (856)
Q Consensus 618 A~~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 693 (856)
|...++.+... +. .--...||...+.+.+.++-.--..++..+.......++......+......+.+.-|+..|-
T Consensus 685 a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ 764 (895)
T KOG2076|consen 685 AFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYM 764 (895)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHH
Confidence 99999999864 11 113446776666666666544444444444333211223333444555667889999999887
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHH----------HcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 003020 694 LLRSLEASPD-VYTSNCMIDLYS----------ERSMVRQAEEIFEIMKKKGDA--NEFTYAMMLIMYKRNGRFEEATRI 760 (856)
Q Consensus 694 ~~~~~~~~p~-~~~~~~l~~~~~----------~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 760 (856)
++.... || +.+--+++.++. +.-..-+++.++.+-.+...+ ...++.+++++|-..|-..-|+.+
T Consensus 765 ra~~~~--pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~Y 842 (895)
T KOG2076|consen 765 RAFRQN--PDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSY 842 (895)
T ss_pred HHHHhC--CCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 776643 44 222223333332 122356677777777766544 566889999999999999999999
Q ss_pred HHHHHHcCCCC---------CH--HHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 761 AKQMRESGLIS---------DL--LSYNNVLGLYAVDGRFKDVIGTFKD 798 (856)
Q Consensus 761 ~~~~~~~~~~p---------~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 798 (856)
|+++++..|.+ |. .+-.++.-.|-..|...-|.+++++
T Consensus 843 YekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 843 YEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 99999985442 11 2335566789999999999988876
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-15 Score=172.84 Aligned_cols=213 Identities=13% Similarity=0.058 Sum_probs=120.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC-----CCChHhHHHHHHH
Q 003020 534 VMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGL-----VSDCIPYCAVISS 608 (856)
Q Consensus 534 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~ 608 (856)
-.+-++...+++.++++.|+.+...+.+....+-..+.++|...+++++|..+++.+..... +++......|.-+
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 34456667778888888888888776655556777777777777888888877777765431 2233334566667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHH
Q 003020 609 YMKLGQLEMAEEVYKDMIRFNVEPD-VVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA-VIYNSLIKLYTKVGYLK 686 (856)
Q Consensus 609 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 686 (856)
|...+++++|..+++++.+. .|- ...| |.. .....||- ..+..++..+...|++.
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~--~p~~~~~~----------~~~-----------~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQ--TPYQVGVY----------GLP-----------GKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred HHhcccHHHHHHHHHHHHhc--CCcEEecc----------CCC-----------CCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 77777777777777777653 110 0000 000 00011222 22233344455555556
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 687 EAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 687 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
+|++.++.+.... +-+......+.+.+...|.+.+|++.++.+....|.+..+....+.++...|++++|..+.+.+.+
T Consensus 434 ~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 434 TAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 6665555554432 134445555555555566666666666555555555555555555555566666666666655555
Q ss_pred cCCC
Q 003020 767 SGLI 770 (856)
Q Consensus 767 ~~~~ 770 (856)
..|+
T Consensus 513 ~~Pe 516 (822)
T PRK14574 513 RSPE 516 (822)
T ss_pred hCCC
Confidence 5544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-17 Score=160.24 Aligned_cols=486 Identities=14% Similarity=0.101 Sum_probs=332.3
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHH-HHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhh
Q 003020 228 INSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTM-GIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMI 306 (856)
Q Consensus 228 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 306 (856)
+-.....+..-|..+..+.+|+..|+-+++...-|+.... ..+.+.+.+..++.+|+.+|+.....
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq------------- 266 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ------------- 266 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh-------------
Confidence 3345556667788888899999999998888777776544 34567788888999999999876531
Q ss_pred hhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 003020 307 GKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELH 386 (856)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 386 (856)
.+..+........+.+...+.+.|++++|+..|+...+. .|+..+-..|+-++..-|+.++..+.|.+|+..-
T Consensus 267 -----vpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip 339 (840)
T KOG2003|consen 267 -----VPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIP 339 (840)
T ss_pred -----ccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCC
Confidence 111122222456677777888999999999999998775 5787765566666667789999999999998642
Q ss_pred CC------------CCHHHHHHHH-----HHHHccCC--hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 003020 387 CP------------PDTRTYNILI-----FLHAKNDK--ISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEE 447 (856)
Q Consensus 387 ~~------------~~~~~~~~li-----~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 447 (856)
.. |+....|.-+ .-+-+.++ .+.++-.--++..--+.|+... -.+-.++
T Consensus 340 ~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle 407 (840)
T KOG2003|consen 340 GEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLE 407 (840)
T ss_pred CCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------ccHHHHH
Confidence 22 3333333222 11111111 1222222222222122222110 0111222
Q ss_pred HHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch-hhHHHHHHHhh--cCCHHHHHHHHHHHhcC
Q 003020 448 LISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSE-GYSANIDGYGE--RGHVLEAERAFICCQEG 524 (856)
Q Consensus 448 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 524 (856)
.++......+..+. -..-.-.+.+.|+++.|.++++-+...+..... +-+.+-..+.- -.++.+|.+.-+.+...
T Consensus 408 ~lk~s~~~~la~dl--ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~ 485 (840)
T KOG2003|consen 408 SLKASQHAELAIDL--EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI 485 (840)
T ss_pred HHHHhhhhhhhhhh--hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc
Confidence 22222111111111 111233467788888888888877765544333 23333222222 33567777777777777
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHH
Q 003020 525 KKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCA 604 (856)
Q Consensus 525 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 604 (856)
..-++.....-...-...|++++|.+.|++.+.....-. .....+...+-..|++++|+..|-++... +..+..+...
T Consensus 486 dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~-ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~q 563 (840)
T KOG2003|consen 486 DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT-EALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQ 563 (840)
T ss_pred cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH-HHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHH
Confidence 777777777777777788999999999999887522211 12233344567789999999988876543 2346777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003020 605 VISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGY 684 (856)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 684 (856)
+.+.|....+...|++++.+.... ++.|+.+...|...|-+.|+-.+|++++-.--.. +|-|..+...|...|....-
T Consensus 564 ianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHH
Confidence 889999999999999999888765 5668889999999999999999999987766554 57889999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 003020 685 LKEAQETYKLLRSLEASPDVYTSNCMIDLY-SERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGR 753 (856)
Q Consensus 685 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 753 (856)
+++|+.+|++..- +.|+..-|..|+..| .+.|++++|.++++...+..|.|...+..|++.+...|-
T Consensus 642 ~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 642 SEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999998765 679999999887665 578999999999999999999999999999998887773
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9e-14 Score=138.31 Aligned_cols=448 Identities=9% Similarity=0.074 Sum_probs=297.5
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHH
Q 003020 191 ELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIV 270 (856)
Q Consensus 191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 270 (856)
..+...|-.....-..++++..|+++|++++..+.. +...|...+.+-.++.....|..++++++..=+..|. .|-..
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY 147 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHH
Confidence 456778888888888899999999999999987755 8889999999999999999999999999987444333 45556
Q ss_pred HHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003020 271 VQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLRE 350 (856)
Q Consensus 271 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 350 (856)
+.+--..|++..|+++|+++. ...|+...|++.|+.-.+...++.|..+|++.+-
T Consensus 148 ~ymEE~LgNi~gaRqiferW~------------------------~w~P~eqaW~sfI~fElRykeieraR~IYerfV~- 202 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWM------------------------EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL- 202 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHH------------------------cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-
Confidence 667778899999999999986 4567889999999999999999999999999876
Q ss_pred CCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HH
Q 003020 351 GIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHC--PPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPD-IV 427 (856)
Q Consensus 351 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~ 427 (856)
+.|++.+|......-.+.|+...|+++|+.+.+.-. .-+...+++....-.++..++.|.-+|+-.++.-++.. ..
T Consensus 203 -~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raee 281 (677)
T KOG1915|consen 203 -VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEE 281 (677)
T ss_pred -ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHH
Confidence 468999999988888899999999999988875311 11233455555555566777777777777665421111 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhh
Q 003020 428 SYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGE 507 (856)
Q Consensus 428 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 507 (856)
.|.....---+.|+.....+..- .+-.-.|++....+|.+.++|...++....
T Consensus 282 L~k~~~~fEKqfGd~~gIEd~Iv---------------------------~KRk~qYE~~v~~np~nYDsWfdylrL~e~ 334 (677)
T KOG1915|consen 282 LYKKYTAFEKQFGDKEGIEDAIV---------------------------GKRKFQYEKEVSKNPYNYDSWFDYLRLEES 334 (677)
T ss_pred HHHHHHHHHHHhcchhhhHHHHh---------------------------hhhhhHHHHHHHhCCCCchHHHHHHHHHHh
Confidence 22222211112222221111100 011123667777888888888888888888
Q ss_pred cCCHHHHHHHHHHHhcCCCCc--HHHHHHHHHH--------HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--
Q 003020 508 RGHVLEAERAFICCQEGKKLT--VLVFNVMVKA--------YGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILA-- 575 (856)
Q Consensus 508 ~g~~~~A~~~~~~~~~~~~~~--~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-- 575 (856)
.|+.+...++|+++....||- -..|.-.|-. -....+.+.+.++|+..++. ++...+||..+--.|+
T Consensus 335 ~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~f 413 (677)
T KOG1915|consen 335 VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQF 413 (677)
T ss_pred cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHH
Confidence 888888888888888776653 2233333222 13456777778888777773 4445556655444333
Q ss_pred --cCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003020 576 --GADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQA 653 (856)
Q Consensus 576 --~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 653 (856)
++.++..|.+++..++. ..|-..++...|..-.+.++++....+|++.++-+ +-+..+|......-...|+.+.|
T Consensus 414 eIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 414 EIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHH
Confidence 45566666666665543 34555556666666666666666666666666654 22555666665555566666666
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 654 QSYFDAMESAG-LPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 654 ~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
..+|+-.+... +......|.+.|+.-...|.++.|..+|+++++
T Consensus 491 RaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 491 RAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 66666665432 111223444555555556666666666666655
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-15 Score=146.18 Aligned_cols=482 Identities=14% Similarity=0.096 Sum_probs=328.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH-HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC----HHHHHH
Q 003020 322 YTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTF-NTMIHIYGNNDQLAEVDSLIKKMEELHCPPD----TRTYNI 396 (856)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ 396 (856)
.+...|..-|..+....+|+..|+-+.+....|+.-.+ ..+.+.+.+...+.+|++.++..+..-...+ ....+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 34445666777788889999999999988777876543 4566788899999999999998885421111 234555
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhH--------HHHH
Q 003020 397 LIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQ--------SALT 468 (856)
Q Consensus 397 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--------~~l~ 468 (856)
+.-.+.+.|+++.|+..|+...+. .|+..+-..|+.++..-|+.++..+.|.+|+.....||..-| ..++
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 566788999999999999998875 488888777888888899999999999999865433332211 1222
Q ss_pred HHHHHcCCh--------HHHHHHHH-HHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 003020 469 RMYIEAGML--------EKSWLWFR-RFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAY 539 (856)
Q Consensus 469 ~~~~~~g~~--------~~a~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 539 (856)
.-..+...+ ..|.+..- ......|.-...|.. -.+-.++.+....- .+.-...-..-...+
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~---------g~dwcle~lk~s~~-~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA---------GCDWCLESLKASQH-AELAIDLEINKAGEL 429 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc---------ccHHHHHHHHHhhh-hhhhhhhhhhHHHHH
Confidence 211111110 11111110 001111111111100 00111111111100 011111222334567
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH
Q 003020 540 GMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQ--ILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEM 617 (856)
Q Consensus 540 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 617 (856)
.++|+++.|+++++-..+..-+.-...-+.|-. .+....++-.|.++-+..+... ..+......-.+.....|++++
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHH
Confidence 899999999999998877644333333333322 2223446667777666665432 2333333333444556799999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 618 AEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 618 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
|.+.|++.+.....-....|| +.-.+-..|+.++|+++|-++-.. +..+..++..+...|....+...|++++-....
T Consensus 509 a~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 999999998754332233444 344567889999999999887553 345778888999999999999999999987765
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003020 698 LEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYN 777 (856)
Q Consensus 698 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 777 (856)
. ++.|+.....|.+.|-+.|+-.+|...+-.--+-.|.|..+..-|+.-|....-+++|+.+|+++.-. .|+..-|.
T Consensus 587 l-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~~kwq 663 (840)
T KOG2003|consen 587 L-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQSKWQ 663 (840)
T ss_pred c-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHHHHH
Confidence 3 44678899999999999999999999988777777999999999999999999999999999998765 46888887
Q ss_pred HHH-HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003020 778 NVL-GLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 778 ~l~-~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G 822 (856)
.++ .++.+.|+|.+|+++|+...+. +.-|..++..|++.+...|
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 765 6667899999999999998775 5667788999999999999
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.5e-13 Score=130.65 Aligned_cols=368 Identities=17% Similarity=0.144 Sum_probs=250.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003020 320 SSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIF 399 (856)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 399 (856)
+..+|..||.+.|+....+.|.++|++......+.+..+||.+|.+-. +..-.+++.+|......||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 457999999999999999999999999988777889999999997654 2333789999999999999999999999
Q ss_pred HHHccCChHHH----HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH-HHHHHHHHhc----CCCCC----CHhhHHH
Q 003020 400 LHAKNDKISMA----SRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCE-AEELISEMDG----GGLEI----DEYTQSA 466 (856)
Q Consensus 400 ~~~~~g~~~~A----~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~-A~~~~~~~~~----~~~~p----~~~~~~~ 466 (856)
...+.|+++.| .+++.+|++.|+.|...+|..+|..+.+.++..+ |..++.+++. ..++| |..-+..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 99999988765 5667889999999999999999999999888765 4444444432 22332 3345666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHH
Q 003020 467 LTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYD 546 (856)
Q Consensus 467 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 546 (856)
.+..|.+..+.+-|.++-.-++.... +...|.. .....-|..+....++....+
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N------------~~~ig~~--------------~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDN------------WKFIGPD--------------QHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCc------------hhhcChH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777665544432110 0000100 011344566777778888899
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 547 KACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMI 626 (856)
Q Consensus 547 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 626 (856)
.-...|+.|...-.-|+..+...++++....+.++-..+++..++..|....... -++++..+.
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil~~L~ 479 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEILMLLA 479 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHHHHHh
Confidence 9999999999888889999999999999999999999999999888664322221 223333333
Q ss_pred HCCCCCCHH---HHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C
Q 003020 627 RFNVEPDVV---VYGVLINAFADVGNVKQAQ-SYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEA-S 701 (856)
Q Consensus 627 ~~~~~~~~~---~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 701 (856)
...+.|+.. -+.....-|+ -++.++. ..-.++.+... .....+.+.-.+.+.|..++|.+++....+.+. -
T Consensus 480 ~~k~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~i 555 (625)
T KOG4422|consen 480 RDKLHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKI 555 (625)
T ss_pred cCCCCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcC
Confidence 333333322 2222221111 1122222 22234444433 344566666677888888888888887755322 2
Q ss_pred CCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 003020 702 PDVYTSN---CMIDLYSERSMVRQAEEIFEIMKKKGDAN 737 (856)
Q Consensus 702 p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 737 (856)
|.....+ -+++.-.+.+..-.|...++-|...+-+.
T Consensus 556 p~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 556 PRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 3333333 55556667778888888888887665333
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-13 Score=136.47 Aligned_cols=223 Identities=12% Similarity=0.064 Sum_probs=178.1
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003020 574 LAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQA 653 (856)
Q Consensus 574 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 653 (856)
+.-.|+.-.|..-|+..++....++ ..|--+..+|....+.++-...|+++.+.++. |..+|..-...+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 3346888888888988888754332 33777778899999999999999999987643 666777777777778899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003020 654 QSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKK 733 (856)
Q Consensus 654 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 733 (856)
..-|++.+..+ |-+...|-.+.-+.-+.++++++...|++..+. ++..+..|+.....+..++++++|.+.|+.+++.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999998875 556677888888888899999999999988773 3345678888899999999999999999999988
Q ss_pred CCC------CHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 734 GDA------NEFTYAMML-IMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 734 ~~~------~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
.|. ++..+..-+ -.+.-.+++..|+.+++++++.+|+ ....|..|+....++|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 765 444332211 1222348899999999999999888 778999999999999999999999999876
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.5e-11 Score=123.27 Aligned_cols=546 Identities=12% Similarity=0.084 Sum_probs=323.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 003020 194 VIHYNIMLRTLGKARKWSYVQSLWDEMSVKGI-VPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQ 272 (856)
Q Consensus 194 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 272 (856)
+..|-..+..+.++|+....+..|++.+..=+ .-....|...+......|-++-++.+|++.++. ++..-.-.+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 56788889999999999999999999876421 123347889999999999999999999999876 3334667778
Q ss_pred HHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHH---HHHHHHHHHHH
Q 003020 273 MYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLK---EASETFAQMLR 349 (856)
Q Consensus 273 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~ 349 (856)
.+++.+++++|.+.+..+.....+. ....+.+...|..+-+...++-+.- ....+++.+..
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~----------------sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~ 241 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFV----------------SKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR 241 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhh----------------hhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc
Confidence 8889999999999998876432111 1122334456666666655543332 22333444433
Q ss_pred CCCCCCH--HhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC---------------------
Q 003020 350 EGIVPTT--VTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDK--------------------- 406 (856)
Q Consensus 350 ~g~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------------------- 406 (856)
.-+|. ..|.+|.+.|.+.|.++.|..++++.... ...+.-|..+-+.|.....
T Consensus 242 --rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~ 317 (835)
T KOG2047|consen 242 --RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDV 317 (835)
T ss_pred --cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhh
Confidence 23453 36778888888888888888888877743 1233333444444433211
Q ss_pred -hHHHHHHHHHHHHcC-----------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHc
Q 003020 407 -ISMASRYFWKMKEAN-----------LEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEA 474 (856)
Q Consensus 407 -~~~A~~~~~~m~~~~-----------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 474 (856)
++-.+.-|+.+...+ -+.++.+|..-... ..|+..+-...|.++.+. +.|..
T Consensus 318 dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~k------------- 381 (835)
T KOG2047|consen 318 DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKK------------- 381 (835)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCccc-------------
Confidence 111222222222211 01122222222211 123334444444444321 11110
Q ss_pred CChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHccCCHHHHHH
Q 003020 475 GMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLT----VLVFNVMVKAYGMGRNYDKACN 550 (856)
Q Consensus 475 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~ 550 (856)
..+.....|..++..|-..|+++.|..+|+++...+-+. ..+|..-...-.+..+++.|++
T Consensus 382 ---------------a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~ 446 (835)
T KOG2047|consen 382 ---------------AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALK 446 (835)
T ss_pred ---------------CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 012223345555566666666666666666555544222 2445555555555556666666
Q ss_pred HHHHHHhCCC-----------C------CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 003020 551 LFDSMTSHGA-----------V------PDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLG 613 (856)
Q Consensus 551 ~~~~m~~~~~-----------~------p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 613 (856)
+.+......- + .+...|+..++.--..|-++....+++++++..+. ++.........+..+.
T Consensus 447 lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~ 525 (835)
T KOG2047|consen 447 LMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHK 525 (835)
T ss_pred HHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhH
Confidence 5555432200 0 12234555666666778888888889988887654 3333333333445566
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCCHHH
Q 003020 614 QLEMAEEVYKDMIRFNVEPDVV-VYGVLINAFAD---VGNVKQAQSYFDAMESAGLPPNAVIYNSL--IKLYTKVGYLKE 687 (856)
Q Consensus 614 ~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~ 687 (856)
-++++.++|++-+..-..|++. .|+..+.-+.+ ..+.+.|..+|++.++ |.||...-+--| ...=.+.|....
T Consensus 526 yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 526 YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 6888999998877664456654 88887777664 3468999999999998 666655322222 222335688889
Q ss_pred HHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHH
Q 003020 688 AQETYKLLRSLEASPD--VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEF--TYAMMLIMYKRNGRFEEATRIAKQ 763 (856)
Q Consensus 688 A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~ 763 (856)
|+++|+++... +++. ...|+..|.--...=-+..-.++|+++++.-|.+.. .....+..-++.|..+.|..+|..
T Consensus 605 amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~ 683 (835)
T KOG2047|consen 605 AMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAH 683 (835)
T ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence 99999987652 2232 335666554333222233456677777766443332 334455666788999999999988
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 764 MRES-GLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 764 ~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
..+. +|..+...|.+.=..-.+.|+ + +.+++|++
T Consensus 684 ~sq~~dPr~~~~fW~twk~FEvrHGn-e---dT~keMLR 718 (835)
T KOG2047|consen 684 GSQICDPRVTTEFWDTWKEFEVRHGN-E---DTYKEMLR 718 (835)
T ss_pred hhhcCCCcCChHHHHHHHHHHHhcCC-H---HHHHHHHH
Confidence 8776 566677888888888889998 3 34455544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-12 Score=126.27 Aligned_cols=414 Identities=15% Similarity=0.162 Sum_probs=247.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH--HhcCCCHHHH-HHHHHHHHhCC----------
Q 003020 320 SSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHI--YGNNDQLAEV-DSLIKKMEELH---------- 386 (856)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~--~~~~g~~~~A-~~~~~~~~~~~---------- 386 (856)
.+++-|.|+.. ..+|.+.++.-+|+.|...|+..+...-..|+.. |.+..++--| .+.|-.|.+.|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 45566666654 4678899999999999999877666554444432 2222222211 12222332222
Q ss_pred ---------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 003020 387 ---------CPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGL 457 (856)
Q Consensus 387 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 457 (856)
.|....++..||.++++--..+.|.+++++-.+...+.+..+||.+|.+-.-. ...+++.+|.....
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhc
Confidence 13344556666666666666666666666655554555566666665543321 12455566665556
Q ss_pred CCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 003020 458 EIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVK 537 (856)
Q Consensus 458 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 537 (856)
.||..|+++++.+..+.|+++.|.
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar-------------------------------------------------------- 293 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDAR-------------------------------------------------------- 293 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHH--------------------------------------------------------
Confidence 666666666665555555554442
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHH-HHHHHHHHHH----cCC----CCChHhHHHHHHH
Q 003020 538 AYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHM-AKRYLRKMQE----AGL----VSDCIPYCAVISS 608 (856)
Q Consensus 538 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-A~~~~~~~~~----~~~----~~~~~~~~~l~~~ 608 (856)
..|.+++.+|.+.|+.|...+|..+|..+++.+++.+ +..++.++.. +.+ +.|...+...+..
T Consensus 294 --------~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~I 365 (625)
T KOG4422|consen 294 --------KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSI 365 (625)
T ss_pred --------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHH
Confidence 2455677778888888888888888887777776644 3333333332 222 2244456666777
Q ss_pred HHhcCCHHHHHHHHHHHHHCC----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003020 609 YMKLGQLEMAEEVYKDMIRFN----VEPDV---VVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTK 681 (856)
Q Consensus 609 ~~~~g~~~~A~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 681 (856)
|....+.+-|.++..-+.... +.|+. .-|..+....|+....+.-+..|+.|.-.-+-|+..+...++++...
T Consensus 366 c~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v 445 (625)
T KOG4422|consen 366 CSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDV 445 (625)
T ss_pred HHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhh
Confidence 777777777777665543211 22332 23455666777777788888888888766667788888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--------------------CHHHHHHH-HHHHHhCCCCCHHH
Q 003020 682 VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERS--------------------MVRQAEEI-FEIMKKKGDANEFT 740 (856)
Q Consensus 682 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------------------~~~~A~~~-~~~~~~~~~~~~~~ 740 (856)
.|.++-.-+++..+...|..-....-..++..+++.. ++.++.+. -.++.+ ..-.+..
T Consensus 446 ~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~-~~~~~t~ 524 (625)
T KOG4422|consen 446 ANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA-QDWPATS 524 (625)
T ss_pred cCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh-ccCChhH
Confidence 8888777777777776554333333223333333222 11111111 112222 2345556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003020 741 YAMMLIMYKRNGRFEEATRIAKQMRESGLI----SDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAA 803 (856)
Q Consensus 741 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 803 (856)
.+..+..+.+.|+.++|.+++..+.+.+-+ |...+...+...-........|+.+++-|...+
T Consensus 525 l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 525 LNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 777888889999999999999988766433 222334456666677888889999998887754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-13 Score=146.06 Aligned_cols=296 Identities=12% Similarity=0.036 Sum_probs=216.7
Q ss_pred HHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHH
Q 003020 504 GYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMA 583 (856)
Q Consensus 504 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A 583 (856)
.....|+++.|.+.+.+..+..+.+...+-....+....|+++.|.+.+.+..+....+...........+...|+++.|
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 44567888888888877777665556666666778888899999999998887653222223334457778889999999
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHH---HHHhcCCHHHHHHHHHH
Q 003020 584 KRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYG-VLIN---AFADVGNVKQAQSYFDA 659 (856)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~g~~~~A~~~~~~ 659 (856)
...++.+.+.. +-++.+...+...+...|++++|.+.+..+.+.+.. +...+. .-.. .....+..+++.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999988875 446677888889999999999999999999987643 333231 1111 11333333444455555
Q ss_pred HHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003020 660 MESAGL---PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYT-SNCMIDLYSERSMVRQAEEIFEIMKKKGD 735 (856)
Q Consensus 660 ~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 735 (856)
+.+... +.+...+..++..+...|++++|.+.+++..+....+.... .....-.....++.+.+.+.+++..+..|
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 554421 24788889999999999999999999999988543222111 11112223345788999999999999999
Q ss_pred CCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 736 ANE--FTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 736 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
.|+ ....++++.+.+.|++++|.+.|+++......|++..+.+++..+.+.|+.++|.++|++.+.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999 888999999999999999999999654444457777788999999999999999999998765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-13 Score=135.63 Aligned_cols=223 Identities=13% Similarity=0.043 Sum_probs=161.9
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHH
Q 003020 436 YSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAE 515 (856)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 515 (856)
+.-.|+.-.|..-|+..+.....++. .|..+..+|....+.++.+..|......+|.++++|...+.++.-.+++++|.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 33457777777778777766544332 26667777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 003020 516 RAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGL 595 (856)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 595 (856)
.-|+++....|.++..|-.+.-+..+.+.++++...|++..++ ++.-+..|+....++..+++++.|.+.|+..++...
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 8888888888888888888877777888888888888888776 444567777788888888888888888887776432
Q ss_pred C-----CCh--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 596 V-----SDC--IPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMES 662 (856)
Q Consensus 596 ~-----~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (856)
. .++ .+.-+++..-. .+++..|+.+++++++.+++ ....|..|...-.+.|+.++|+++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 111 11122222112 27788888888888876432 556778888888888888888888887654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-14 Score=149.81 Aligned_cols=285 Identities=15% Similarity=0.105 Sum_probs=209.8
Q ss_pred CHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCChHHHHHHH
Q 003020 510 HVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGA--VPDKCSYNSLIQILAGADLPHMAKRYL 587 (856)
Q Consensus 510 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~A~~~~ 587 (856)
+..+|...|.........+..+...++.+|...+++++|.++|+.+.+... .-+..+|.+.+-.+-+ +.++.++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 456777777776666566667777788888888888888888888776521 1255566666544322 2233333
Q ss_pred HHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003020 588 RKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPP 667 (856)
Q Consensus 588 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 667 (856)
.+-+-.--+..+.+|.++.++|.-+++++.|++.|+++++.+ +....+|+.+..=+.....+|.|...|+..+... +.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-ch
Confidence 332222234567788888888888888888888888888753 1256688877777777888888888888887653 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003020 668 NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIM 747 (856)
Q Consensus 668 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 747 (856)
+-..|..++..|.++++++.|+-.|+++.+.++ .+.+...+++..+.+.|+.++|+.+++++...+|.|+..-...+..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 446677778888888888888888888887553 3455666777788888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 748 YKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
+...+++++|++.++++.+.-|. +...|..++..|-+.|+.+.|+.-|--+.+.
T Consensus 567 l~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 88888888888888888888776 7788888888888888888888888777763
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.2e-13 Score=141.77 Aligned_cols=286 Identities=9% Similarity=0.059 Sum_probs=221.7
Q ss_pred hhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHcCCChHHH
Q 003020 506 GERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYN--SLIQILAGADLPHMA 583 (856)
Q Consensus 506 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~A 583 (856)
...|+++.|++......+..+.....+.....+..+.|+++.|...|.++.+. .|+..... .....+...|+++.|
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred HhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 34688888887777655543333334444455558899999999999999875 45543332 336688889999999
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 003020 584 KRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDV-------VVYGVLINAFADVGNVKQAQSY 656 (856)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~ 656 (856)
...++.+.+.. +.++.....+...|.+.|++++|..++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998876 446778888999999999999999999999987654222 1233334333444556666677
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 003020 657 FDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA 736 (856)
Q Consensus 657 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 736 (856)
++.+.+. .+.++.....+..++...|+.++|.+.+++..+. .|+.... ++.+....++.+++++..+...+..|.
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 7776443 3568888999999999999999999999998883 3555322 233344569999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 737 NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 737 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
|+..+..++..|.+.+++++|.+.|+++.+.. |+...+..++.++.+.|+.++|.++|++.+.
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999976 5778888999999999999999999998876
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.8e-12 Score=129.58 Aligned_cols=472 Identities=13% Similarity=0.041 Sum_probs=323.2
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003020 319 LSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILI 398 (856)
Q Consensus 319 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 398 (856)
.+..-+..+.+-+..+.++.-|.-+-++....+ -|+.....+.+++.-.|++++|..++..-.-. ..|..+.....
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~ 89 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAA 89 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHH
Confidence 355667777777778888888888888877655 45556667788888889999998888765422 44777778888
Q ss_pred HHHHccCChHHHHHHHHHHHH--cC-----------CCCCHHh-----------HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 003020 399 FLHAKNDKISMASRYFWKMKE--AN-----------LEPDIVS-----------YRTLLYAYSIRRMVCEAEELISEMDG 454 (856)
Q Consensus 399 ~~~~~~g~~~~A~~~~~~m~~--~~-----------~~~~~~~-----------~~~ll~~~~~~g~~~~A~~~~~~~~~ 454 (856)
..+.+..++++|..++..-.. .. +.+|..- +-.-...|....+.++|...|.+.+.
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~ 169 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL 169 (611)
T ss_pred HHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh
Confidence 899999999999998872210 00 1111110 00111234445566777777777665
Q ss_pred CCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCC-HHHHHHHHH--------------
Q 003020 455 GGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGH-VLEAERAFI-------------- 519 (856)
Q Consensus 455 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~-------------- 519 (856)
..+. ....+..++....- ...+-+.+++.+.-. ...+. .+.-...|+
T Consensus 170 ~D~~-c~Ea~~~lvs~~ml--t~~Ee~~ll~~l~~a---------------~~~~ed~e~l~~lyel~~~k~~n~~~~~r 231 (611)
T KOG1173|consen 170 ADAK-CFEAFEKLVSAHML--TAQEEFELLESLDLA---------------MLTKEDVERLEILYELKLCKNRNEESLTR 231 (611)
T ss_pred cchh-hHHHHHHHHHHHhc--chhHHHHHHhcccHH---------------hhhhhHHHHHHHHHHhhhhhhcccccccc
Confidence 4322 11111111111110 001111111110000 00000 000011111
Q ss_pred ---HHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 003020 520 ---CCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLV 596 (856)
Q Consensus 520 ---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 596 (856)
........++.+.....+-+...+++.+..++++.+.+. .++....+-.-|..+...|+..+-..+-.++.+. .|
T Consensus 232 ~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP 309 (611)
T KOG1173|consen 232 NEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YP 309 (611)
T ss_pred CchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CC
Confidence 111111234566666777788889999999999999886 3445555555666888888888777777777775 45
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003020 597 SDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLI 676 (856)
Q Consensus 597 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 676 (856)
....+|-++.-.|...|+..+|.+.|.+....+. .=...|-.+...|+-.|..++|+..+....+. ++-...-+--++
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlg 387 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLG 387 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHH
Confidence 5677899999999999999999999999886532 13458999999999999999999999888663 222222333455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHH
Q 003020 677 KLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG-------DANEFTYAMMLIMYK 749 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~ 749 (856)
.-|.+.+..+.|.++|....... +.|+...+-++-.....+.+.+|..+|+..+..- +.-..+++.|+.+|.
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 66888999999999999987743 2567778888877888899999999999877322 223457899999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003020 750 RNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMK 820 (856)
Q Consensus 750 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 820 (856)
+.+++++|+..+++.+...+. ++.++..++-+|...|+.+.|++.|.+.+- +.|+..+...++.....
T Consensus 467 kl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 999999999999999999988 999999999999999999999999999887 69999776666655443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-11 Score=122.48 Aligned_cols=364 Identities=15% Similarity=0.098 Sum_probs=238.0
Q ss_pred CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHH--HH
Q 003020 317 GSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTR--TY 394 (856)
Q Consensus 317 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~ 394 (856)
...|...+-..+..+.+.|....|+..|...... .+-.-..|..|...+. +.+.+ .... .+.+.|.. .-
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~~e~~----~~l~-~~l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---DIEIL----SILV-VGLPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---hHHHH----HHHH-hcCcccchHHHH
Confidence 3345666666677777888888898888887754 2224445555444332 22222 2222 12222211 11
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--CCCHhhHHHHHHHHH
Q 003020 395 NILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGL--EIDEYTQSALTRMYI 472 (856)
Q Consensus 395 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~ 472 (856)
--+..++....+.+++..-.+.....|.+.+...-+....+...+.++++|+.+|+++.+..+ -.|..+|+.++.+-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 123356666668888888888888888766666556666667788899999999999988742 125567777664433
Q ss_pred HcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHH
Q 003020 473 EAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLF 552 (856)
Q Consensus 473 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 552 (856)
...++. -+-......+..-+++-.-+++.|.-.++.++|...|+++.+.+|....+|+.|+.-|....+...|++-|
T Consensus 311 ~~skLs---~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSKLS---YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHHHH---HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 322211 11122233445566677777888888888999999999999888888889999999998888888899888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003020 553 DSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEP 632 (856)
Q Consensus 553 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 632 (856)
+...+.. +.|-..|..+.++|.-.+.+.-|+-.|+++.+.. +.|...|.+|..+|.+.++.++|++.|.+....| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 8888763 3367777788888888777777777777777653 4567777777777777777777777777777665 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 633 DVVVYGVLINAFADVGNVKQAQSYFDAMES----AGLPPN--AVIYNSLIKLYTKVGYLKEAQETYKLL 695 (856)
Q Consensus 633 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 695 (856)
+...+..+...|-+.++.++|...|++-++ .|...+ ...-.-|..-+.+.+++++|.......
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 556777777777777777777777766654 222211 112222444455666666665544433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=157.09 Aligned_cols=261 Identities=16% Similarity=0.185 Sum_probs=108.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 003020 534 VMVKAYGMGRNYDKACNLFDSMTSHGAVP-DKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKL 612 (856)
Q Consensus 534 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 612 (856)
.+...+...|++++|++++++......+| +...|..+.......++++.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34556666677777777775544332122 3334444555555667777777777777665422 44456666665 677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 613 GQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAG-LPPNAVIYNSLIKLYTKVGYLKEAQET 691 (856)
Q Consensus 613 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 691 (856)
+++++|..++....+. .++...+..++..+...++++++..+++.+.... .+++...|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888776654 3466667777888888888888888888876532 345677788888888888999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 692 YKLLRSLEASP-DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 692 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
|+++++.. | +......++..+...|+.+++.++++......|.|+..+..++.+|...|++++|+.++++..+..|.
T Consensus 169 ~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 98888843 4 46667778888888888888888888887777777788888899999999999999999998888877
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 771 SDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 771 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
|+....+++.++...|+.++|..++++..+
T Consensus 247 -d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 -DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp --HHHHHHHHHHHT-----------------
T ss_pred -cccccccccccccccccccccccccccccc
Confidence 888888999999999999999888887654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.4e-14 Score=146.85 Aligned_cols=291 Identities=12% Similarity=0.075 Sum_probs=197.1
Q ss_pred CHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHH
Q 003020 441 MVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFIC 520 (856)
Q Consensus 441 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 520 (856)
+..+|+..|.++... +.........++.+|...+++++|.++|+.++...|.-.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv------------------------- 387 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRV------------------------- 387 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-------------------------
Confidence 345666666663322 222335556666666666666666666666665444322
Q ss_pred HhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh
Q 003020 521 CQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDS-MTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDC 599 (856)
Q Consensus 521 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 599 (856)
.+..+|.+.+-.+-+ +-++..+.+ +... -+-.+.+|-.+.+.|.-+++.+.|++.|++++... +...
T Consensus 388 ------~~meiyST~LWHLq~----~v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~fa 455 (638)
T KOG1126|consen 388 ------KGMEIYSTTLWHLQD----EVALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFA 455 (638)
T ss_pred ------cchhHHHHHHHHHHh----hHHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-Cccc
Confidence 123334433333211 111222211 1111 12234455555555555555555555555555432 1245
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 600 IPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLY 679 (856)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 679 (856)
.+|+.+..-+.....+|.|...|+.++... +.+-.+|--++-.|.++++++.|.-.|+++.+.+ |.+.+....++..+
T Consensus 456 YayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~ 533 (638)
T KOG1126|consen 456 YAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQ 533 (638)
T ss_pred hhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHH
Confidence 667777777777888999999999887543 2244466667888999999999999999999886 67788888899999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 680 TKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATR 759 (856)
Q Consensus 680 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 759 (856)
.+.|+.++|+.+|+++...+.+ ++..--..+..+...+++++|+..++++.+.-|.+..++..++..|.+.|+.+.|+.
T Consensus 534 ~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 534 HQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred HHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence 9999999999999999886543 333333556777888999999999999999989999999999999999999999999
Q ss_pred HHHHHHHcCCCCC
Q 003020 760 IAKQMRESGLISD 772 (856)
Q Consensus 760 ~~~~~~~~~~~p~ 772 (856)
-|--+.+.+|++.
T Consensus 613 ~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 613 HFSWALDLDPKGA 625 (638)
T ss_pred hhHHHhcCCCccc
Confidence 9999999887744
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-11 Score=122.20 Aligned_cols=377 Identities=12% Similarity=0.051 Sum_probs=211.2
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhh--H
Q 003020 422 LEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGY--S 499 (856)
Q Consensus 422 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~ 499 (856)
...|...+....-.+-+.|...+|++.|...+..- +-....|..+... ..+.+. ...+....+.+..-. .
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~l---it~~e~----~~~l~~~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSEL---ITDIEI----LSILVVGLPSDMHWMKKF 231 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHh---hchHHH----HHHHHhcCcccchHHHHH
Confidence 34555555555555666777777777777665431 1122233322222 122222 122221112111111 1
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHc
Q 003020 500 ANIDGYGERGHVLEAERAFICCQEGK-KLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGA--VPDKCSYNSLIQILAG 576 (856)
Q Consensus 500 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~ 576 (856)
-+..++......+++..-.......+ +.+...-+....+.-...++++|+.+|+++.+... -.|..+|+.++-+-..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 22444555556666666666555543 33444445555555666777777777777776521 1145566665533222
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 577 ADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSY 656 (856)
Q Consensus 577 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 656 (856)
..+ +..+.+-...-.+--+.|...+.+.|.-.++.++|+..|+++++.++ .....|+.|..-|....+...|++.
T Consensus 312 ~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 312 KSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHH
Confidence 111 11111111111123345566666667777777777777777776652 2455677777777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 003020 657 FDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA 736 (856)
Q Consensus 657 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 736 (856)
++..++.+ |.|-..|-.|+++|.-.+...=|+-.|++..+..+ .|...|..|+.+|.+.++.++|+.-|.++...+..
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 77777664 56667777777777777777777777777766432 45667777777777777777777777777766666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 737 NEFTYAMMLIMYKRNGRFEEATRIAKQMRES----GLISDL---LSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 737 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
+..++..|+..|-+.++.++|.+.|++.++. |.. ++ .+..-|+.-+.+.+++++|..+..+.... .+...
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~-~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~e 541 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI-DDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECE 541 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHH
Confidence 6667777777777777777777777766652 222 22 22233555566777777776665555442 44444
Q ss_pred HHHHHHH
Q 003020 810 TFKSLGA 816 (856)
Q Consensus 810 ~~~~l~~ 816 (856)
--++|++
T Consensus 542 eak~LlR 548 (559)
T KOG1155|consen 542 EAKALLR 548 (559)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-11 Score=125.53 Aligned_cols=283 Identities=12% Similarity=0.025 Sum_probs=185.7
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHH
Q 003020 423 EPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANI 502 (856)
Q Consensus 423 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 502 (856)
..+.........-+...+++.+..++++.+.+.. ++....+..-+..+...|+..+-..+-.++....|..+.+|..++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence 3455555555666777888888888888887754 234444444455777778877777777788888888888888888
Q ss_pred HHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHH
Q 003020 503 DGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHM 582 (856)
Q Consensus 503 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 582 (856)
-.|.-.|+..+|++.|.++...++.-...|-..+..|.-.|..|.|+..|...-+. ++-....+--+.--|.+.++...
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 88888888888888888888887777888888888888888888888887776553 11111112223344566677777
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C---C-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 583 AKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFN--V---E-PDVVVYGVLINAFADVGNVKQAQSY 656 (856)
Q Consensus 583 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~---~-~~~~~~~~l~~~~~~~g~~~~A~~~ 656 (856)
|.+.|.++.... +.|+.+.+-+.-.....+.+.+|..+|+..+..- . . --..+++.+..+|.+.+++++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 777777766653 4466666666666666677777777777665210 0 0 0223456666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003020 657 FDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMI 711 (856)
Q Consensus 657 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 711 (856)
+++.+... +-+..++.+++-.|...|.++.|.+.|.+.+. +.|+..+-..++
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL 529 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELL 529 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHH
Confidence 66666542 45666666666666666666666666666554 345544333333
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.3e-09 Score=107.50 Aligned_cols=600 Identities=12% Similarity=0.110 Sum_probs=362.5
Q ss_pred HHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcc--------CCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHH
Q 003020 176 RALEIFEWFKRQECHELNVIHYNIMLRTLGKA--------RKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEE 247 (856)
Q Consensus 176 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 247 (856)
.-..+|+.+.+. ++.+...|...+..-..+ .-|+.....|++.+..-+. -+..|..-+....++|+...
T Consensus 44 ~~~~lYERal~~--lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHk-mpRIwl~Ylq~l~~Q~~iT~ 120 (835)
T KOG2047|consen 44 QRNLLYERALKE--LPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHK-MPRIWLDYLQFLIKQGLITR 120 (835)
T ss_pred HHHHHHHHHHHH--CCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHhcchHHH
Confidence 345566666655 455666666666332211 1233333344443321111 34577777778888888888
Q ss_pred HHHHHHHHHhCC-CCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHH
Q 003020 248 AVCWLERMNEGG-MEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNT 326 (856)
Q Consensus 248 A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (856)
-+..|++++..= +.-....|...+......|-.+.+..+|++.+. .++..-+.
T Consensus 121 tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--------------------------~~P~~~ee 174 (835)
T KOG2047|consen 121 TRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--------------------------VAPEAREE 174 (835)
T ss_pred HHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--------------------------cCHHHHHH
Confidence 888888877541 112234666677777777777888888887652 13345667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHhHHHHHHHHhcCCCHH---HHHHHHHHHHhCCCCCCH--HHHH
Q 003020 327 LIDTYGKAGQLKEASETFAQMLREG------IVPTTVTFNTMIHIYGNNDQLA---EVDSLIKKMEELHCPPDT--RTYN 395 (856)
Q Consensus 327 li~~~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~ll~~~~~~g~~~---~A~~~~~~~~~~~~~~~~--~~~~ 395 (856)
.|..++..+++++|.+.+...+... -+.+...|..+-....+.-+.- ....+++.+... -+|. ..|.
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~ 252 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWC 252 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHH
Confidence 7777888888888888887765431 1223345555555444432222 334444444432 2343 4678
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHHc
Q 003020 396 ILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEI-DEYTQSALTRMYIEA 474 (856)
Q Consensus 396 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 474 (856)
+|.+-|.+.|.++.|.++|++.... ..++.-|..+..+|++-....-+..+= ...+.+..+ +...
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~d----------- 318 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDVD----------- 318 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhhh-----------
Confidence 8888888888888888888877653 234445566666665433221111111 010111111 1111
Q ss_pred CChHHHHHHHHHH------------HhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCC------cHHHHHHHH
Q 003020 475 GMLEKSWLWFRRF------------HLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKL------TVLVFNVMV 536 (856)
Q Consensus 475 g~~~~a~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~li 536 (856)
++-.+..|+.+ +..+|.+.+.|...+..+ .|+..+-...|.++...-.| ....|..+.
T Consensus 319 --l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fa 394 (835)
T KOG2047|consen 319 --LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFA 394 (835)
T ss_pred --HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHH
Confidence 11122223322 234455666665554443 56777777778776654322 256899999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-----------------
Q 003020 537 KAYGMGRNYDKACNLFDSMTSHGAVPD---KCSYNSLIQILAGADLPHMAKRYLRKMQEAGLV----------------- 596 (856)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~----------------- 596 (856)
+.|-..|+.+.|..+|++..+...+.- ..+|-.....-.+..+++.|+++++.+....-.
T Consensus 395 klYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlh 474 (835)
T KOG2047|consen 395 KLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLH 474 (835)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHH
Confidence 999999999999999999987644322 234444455555677888888888776542111
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 003020 597 SDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA-VIYNSL 675 (856)
Q Consensus 597 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l 675 (856)
.+...|...++.-...|-++....+|++++...+- ++.........+-.+.-++++.++|++-+..-..|++ ..|+..
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tY 553 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTY 553 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHH
Confidence 12334566666667778899999999999876643 4444444444555667789999999887665434555 566665
Q ss_pred HHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhCCCCC--HHHHHHHHHHH
Q 003020 676 IKLYTK---VGYLKEAQETYKLLRSLEASPDVYTSNCM--IDLYSERSMVRQAEEIFEIMKKKGDAN--EFTYAMMLIMY 748 (856)
Q Consensus 676 ~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~ 748 (856)
+.-+.+ .-+.+.|..+|+++++ +.+|...-+-.| ...-.+.|....|+++++++...-++. ...|+..+.--
T Consensus 554 Ltkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~ka 632 (835)
T KOG2047|consen 554 LTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKA 632 (835)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 554443 2478999999999998 554554322222 222345688899999999987654332 23555555433
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcC-HH
Q 003020 749 KRNGRFEEATRIAKQMRESGLISDLL-SYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQP--DDFTFKSLGAVLMKCG-LE 824 (856)
Q Consensus 749 ~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~G-~~ 824 (856)
...=-...-..+|+++++.-|..+.. ...-.+..-.+.|..+.|..+|...-+. ..| +...|.+.-..=.+.| .+
T Consensus 633 ae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 633 AEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHH
Confidence 33333456678899999874332222 2344566678899999999999887664 344 3455888888888999 44
Q ss_pred HHH
Q 003020 825 LTR 827 (856)
Q Consensus 825 ~~~ 827 (856)
.++
T Consensus 712 T~k 714 (835)
T KOG2047|consen 712 TYK 714 (835)
T ss_pred HHH
Confidence 443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.7e-11 Score=125.75 Aligned_cols=128 Identities=10% Similarity=0.050 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 003020 672 YNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN 751 (856)
Q Consensus 672 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 751 (856)
|......+.+.+..++|...+.+..... .-....|...+..+...|..++|.+.|..+...+|.++.+..+++.++.+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 4444555555555555555555554422 123344555555555666666666666666666666666666666666666
Q ss_pred CCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 752 GRFEEATR--IAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 752 g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
|+..-|.. ++..+++.+|. ++..|..++.++.+.|+.++|.+.|+-..+
T Consensus 732 G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred CCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 65555555 66666666665 666666666666666666666666666555
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-10 Score=120.91 Aligned_cols=408 Identities=13% Similarity=0.053 Sum_probs=249.0
Q ss_pred CCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 003020 352 IVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRT 431 (856)
Q Consensus 352 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 431 (856)
+..|...|..+.-++...|+++.+.+.|++.... .......|+.+...|...|.-..|..+.++.......|+..+--.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3445555555555566666666666666666522 223344566666666666666666666665544332233222222
Q ss_pred HH-HHHH-hcCCHHHHHHHHHHHhcC--CC--CCCHhhHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCCCC
Q 003020 432 LL-YAYS-IRRMVCEAEELISEMDGG--GL--EIDEYTQSALTRMYIEAG-----------MLEKSWLWFRRFHLAGDMS 494 (856)
Q Consensus 432 ll-~~~~-~~g~~~~A~~~~~~~~~~--~~--~p~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~ 494 (856)
++ ..|. +.+..+++++.-.+++.. +. ...+..+..++-+|...- ...++.+.++++...++.+
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 22 2222 345555555555555441 10 112233333333333221 1334566677777777777
Q ss_pred chhhHHHHHHHhhcCCHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003020 495 SEGYSANIDGYGERGHVLEAERAFICCQEG-KKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQI 573 (856)
Q Consensus 495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 573 (856)
+.+...+.-.|..+++++.|.+...+..+. +..++..|..+.-++...+++.+|+.+.+...+. ...|......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhhh
Confidence 777777777778888888888877777776 4556777888877788888888888777776553 11111111111122
Q ss_pred HHcCCChHHHHHHHHHHHHc---------------------C-------CCCChHhHHHHHHHHHhcC---CHHHHHHHH
Q 003020 574 LAGADLPHMAKRYLRKMQEA---------------------G-------LVSDCIPYCAVISSYMKLG---QLEMAEEVY 622 (856)
Q Consensus 574 ~~~~~~~~~A~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~~~~g---~~~~A~~~~ 622 (856)
-...++.++++.....++.. | ..-.+.++..+..-....+ ..+..
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---- 632 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---- 632 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc----
Confidence 22234444444333332211 0 0001111222111111111 01111
Q ss_pred HHHHHCC--CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 623 KDMIRFN--VEPD------VVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKL 694 (856)
Q Consensus 623 ~~~~~~~--~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 694 (856)
+.+.- ..|+ ...|......+.+.++.++|...+.+..+.. +.....|...+..+...|..++|.+.|..
T Consensus 633 --Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 633 --LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred --cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 11101 1233 2356667778889999999999999988763 66778888888999999999999999999
Q ss_pred HHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 695 LRSLEASPD-VYTSNCMIDLYSERSMVRQAEE--IFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 695 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
....+ |+ +.....+..++.+.|+..-|.. ++..+.+.+|.++..|..++..+.+.|+.+.|.+.|+-+.+....
T Consensus 710 Al~ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 710 ALALD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHhcC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 88744 54 5577889999999998877777 999999999999999999999999999999999999999988765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-12 Score=139.77 Aligned_cols=278 Identities=13% Similarity=0.056 Sum_probs=214.4
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 003020 540 GMGRNYDKACNLFDSMTSHGAVPDK-CSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMA 618 (856)
Q Consensus 540 ~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 618 (856)
...|+++.|.+.+.+..+. .|+. ..+-....+....|+++.|.+.+.++.+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4679999999999988775 3443 344555677888999999999999988764333333445567888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHHH
Q 003020 619 EEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYN-SLIKLY---TKVGYLKEAQETYKL 694 (856)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~---~~~g~~~~A~~~~~~ 694 (856)
...++.+.+.. +.+...+..+...+.+.|++++|.+.+..+.+.++. +...+. .-..++ ...+..+++.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999976 347778889999999999999999999999998744 333332 112222 333344444455555
Q ss_pred HHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003020 695 LRSLEA---SPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTY--AMMLIMYKRNGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 695 ~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 769 (856)
+.+... +.+...+..++..+...|+.++|.+.+++..+..|++.... ..........++.+.+++.+++.++..|
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 555322 13778888999999999999999999999999888776432 2222233446788999999999999988
Q ss_pred CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003020 770 ISDL--LSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 770 ~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G 822 (856)
. |+ ....++++.+.+.|+|++|.+.|++.......|+...+..+...+.+.|
T Consensus 331 ~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g 384 (409)
T TIGR00540 331 D-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAG 384 (409)
T ss_pred C-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcC
Confidence 7 88 7888999999999999999999996444446899999999999999999
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-15 Score=152.52 Aligned_cols=261 Identities=18% Similarity=0.179 Sum_probs=114.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHh-cC-CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003020 500 ANIDGYGERGHVLEAERAFICCQ-EG-KKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGA 577 (856)
Q Consensus 500 ~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 577 (856)
.++..+.+.|++++|.+++.... .. ++.++..|..+.......+++++|+..++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666777777777777775433 33 3556777777777888888888888888888876433 45556666666 688
Q ss_pred CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 578 DLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFN-VEPDVVVYGVLINAFADVGNVKQAQSY 656 (856)
Q Consensus 578 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 656 (856)
+++++|..++....+.. +++..+...+..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887766543 456667778888899999999999999987543 345778888999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 003020 657 FDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA 736 (856)
Q Consensus 657 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 736 (856)
+++..+.. |.|......++..+...|+.+++.++++...+.. +.+...+..+..+|...|++++|+..+++.....|.
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 99999874 5567888899999999999999888888877643 344456778899999999999999999999998899
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 737 NEFTYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 737 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
|+.+...++.++...|+.++|.++++++.+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999999999999988765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.1e-12 Score=133.73 Aligned_cols=122 Identities=11% Similarity=-0.017 Sum_probs=67.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHH
Q 003020 404 NDKISMASRYFWKMKEANLEPDIVS-YRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWL 482 (856)
Q Consensus 404 ~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 482 (856)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|.+.+.++.+.. |+.....
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~----------------- 155 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPV----------------- 155 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHH-----------------
Confidence 577777776666554431 12222 2222333456666677766666665432 2221111
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 003020 483 WFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAV 561 (856)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 561 (856)
.......+...|+++.|...++...+..|.++.....+...|.+.|++++|.+++..+.+.+..
T Consensus 156 ---------------~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~ 219 (398)
T PRK10747 156 ---------------EITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG 219 (398)
T ss_pred ---------------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC
Confidence 0111334444555555555555555555666677777777777777777777777777776544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-11 Score=115.29 Aligned_cols=222 Identities=12% Similarity=0.113 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHH
Q 003020 615 LEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKL-----YTKVGYLKEAQ 689 (856)
Q Consensus 615 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-----~~~~g~~~~A~ 689 (856)
-+.|++++-.+.+. -| ..-..++-.|.+++++++|..+.+.+.-. .|-......+..+ ........-|.
T Consensus 270 gEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 270 GEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQ 343 (557)
T ss_pred CccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 45555555555432 11 22233444566666666666665554211 1222222111111 11112334455
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003020 690 ETYKLLRSLEASPDVY-TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESG 768 (856)
Q Consensus 690 ~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 768 (856)
+.|+.+-+.+...|.. --.++...+.-..++++.+..++.+..-...|...-..++.+++..|++.+|+++|-++....
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ 423 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPE 423 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChh
Confidence 5555443333332222 223444445555566666666666665554444444556666666677777766666655444
Q ss_pred CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcC--------HHHHHhhcchhhHHHH
Q 003020 769 LISDLLSY-NNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFT-FKSLGAVLMKCG--------LELTRKKNAQSGLQAW 838 (856)
Q Consensus 769 ~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~G--------~~~~~~~~~~~~~~~~ 838 (856)
++ +..+| ..++++|.+.|+++-|..++- +..-..+... ...+.+.|.++| ++++- ..+|.|+.|
T Consensus 424 ik-n~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE--~lDP~pEnW 497 (557)
T KOG3785|consen 424 IK-NKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE--ILDPTPENW 497 (557)
T ss_pred hh-hhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--ccCCCcccc
Confidence 44 33444 344566666666666644433 3222223333 444555566666 22221 245666666
Q ss_pred HHHHhhHhhh
Q 003020 839 MSTLSSVIEE 848 (856)
Q Consensus 839 ~~~~~~~~~~ 848 (856)
..-=+.|++.
T Consensus 498 eGKRGACaG~ 507 (557)
T KOG3785|consen 498 EGKRGACAGL 507 (557)
T ss_pred CCccchHHHH
Confidence 6655555554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-11 Score=118.83 Aligned_cols=293 Identities=12% Similarity=0.089 Sum_probs=228.3
Q ss_pred hcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 003020 507 ERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRY 586 (856)
Q Consensus 507 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~ 586 (856)
..|++..|++...+..+..+.....|..-+.+-.+.|+.+.+-.++.+..+.--.++....-+........|+++.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 36777777777777666666667777777777778888888888888887764445555666677777888888888888
Q ss_pred HHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 587 LRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDV-------VVYGVLINAFADVGNVKQAQSYFDA 659 (856)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (856)
+.++.+.+ +.++.+......+|.+.|++.+...++..+.+.+.-.|. .+|+.+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 88888775 345667778888888888888888888888887754443 4666666666666666665667776
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH
Q 003020 660 MESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEF 739 (856)
Q Consensus 660 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 739 (856)
.... ...++..-.+++.-+.+.|+.++|.++.....+.+..|.. +..-.+.+.++...=++..++..+..|.++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 6443 3456667778888899999999999999999887766662 2223456788889999999999988899999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003020 740 TYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD 807 (856)
Q Consensus 740 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 807 (856)
.+.+|+..|.+.+.|.+|.+.++.+++.+ |+..+|+.++.++.+.|+..+|.+++++.+..-..|+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~--~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLR--PSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999888875 6889999999999999999999999999876434443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-09 Score=118.55 Aligned_cols=630 Identities=13% Similarity=0.038 Sum_probs=388.6
Q ss_pred cHHHHhhHhhhhc--C------hhHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003020 147 DLDEALKPWAENL--S------NKERSIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWD 218 (856)
Q Consensus 147 ~~~~al~~~~~~~--~------~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 218 (856)
+...++..|-+.+ + ...++.+++.--+..+|...|+.+.+.+ ..++..+-.....|++..+|+.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3566777665522 2 2245667776668889999999998875 5677889999999999999999998854
Q ss_pred HHHhCCCC-cChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcccc
Q 003020 219 EMSVKGIV-PINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLR 297 (856)
Q Consensus 219 ~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 297 (856)
..-+..+. .-...|..++-.|...++...|+..|+...+..+. |...|..++.+|..+|.+..|.++|.+....
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L---- 625 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL---- 625 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc----
Confidence 43332211 11224555556678899999999999999887543 7789999999999999999999999887531
Q ss_pred CCcchhhhhhhhccCCcCCCCcCHhHHHH--HHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHhHHHHHHHHhcC
Q 003020 298 HGEDTKTMIGKVENGSHVNGSLSSYTYNT--LIDTYGKAGQLKEASETFAQMLREG------IVPTTVTFNTMIHIYGNN 369 (856)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~ll~~~~~~ 369 (856)
+ | ...|.. .....+..|.+.+|+..+......- ..--..++..+...+...
T Consensus 626 ------------------r--P-~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~ 684 (1238)
T KOG1127|consen 626 ------------------R--P-LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAIT 684 (1238)
T ss_pred ------------------C--c-HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 1 1 122222 2233466788899988888765421 111122333333333334
Q ss_pred CCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHH-------------------HH----ccCCh---H---HHHHH
Q 003020 370 DQLAEVDSLIKKMEE-------LHCPPDTRTYNILIFL-------------------HA----KNDKI---S---MASRY 413 (856)
Q Consensus 370 g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~-------------------~~----~~g~~---~---~A~~~ 413 (856)
|=..++...++..++ .....+...|-.+.++ +. +.+.. | -+.+.
T Consensus 685 gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c 764 (1238)
T KOG1127|consen 685 GFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYEC 764 (1238)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHH
Confidence 434444444443332 1111122222222111 11 11111 1 01111
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHh--------cCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHH
Q 003020 414 FWKMKEANLEPDIVSYRTLLYAYSI--------RRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFR 485 (856)
Q Consensus 414 ~~~m~~~~~~~~~~~~~~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 485 (856)
+-.-++ ...+..+|..++.-|.+ ..+...|+..+.+.++.. ..+..+++.+.-. ...|.+.-+...|-
T Consensus 765 ~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfI 840 (1238)
T KOG1127|consen 765 GIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFI 840 (1238)
T ss_pred hhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhh
Confidence 111111 11234566666665554 123346888888887643 2256677766655 66688888888888
Q ss_pred HHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCC
Q 003020 486 RFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTS----HGAV 561 (856)
Q Consensus 486 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~ 561 (856)
+.....|.....|.+++..+.+..+++.|...|.......|.+...|-.........|+.-++..+|..--+ .|-.
T Consensus 841 ks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka 920 (1238)
T KOG1127|consen 841 KSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKA 920 (1238)
T ss_pred hhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcccccc
Confidence 888888999999999999999999999999999999999999999999988888889998888888876222 2333
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHH---------cCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC
Q 003020 562 PDKCSYNSLIQILAGADLPHMAKRYLRKMQE---------AGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRF-NVE 631 (856)
Q Consensus 562 p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~ 631 (856)
|+..-+..........|+.+.-+...+++-. .+.+.+...|..........+.+..|.+...+.+.. ..+
T Consensus 921 ~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k 1000 (1238)
T KOG1127|consen 921 KKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELK 1000 (1238)
T ss_pred chhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555655544433333211 134556677888888888888888888877775421 012
Q ss_pred CCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCC-HH
Q 003020 632 PDVVVYGV----LINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS-LEASPD-VY 705 (856)
Q Consensus 632 ~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~-~~ 705 (856)
-|...|+. +.+.++..|.++.|..-+...... .+...-..-+. ..-.++++++.+.|+++.. .+...| ++
T Consensus 1001 ~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e---vdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vv 1076 (1238)
T KOG1127|consen 1001 LDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME---VDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVV 1076 (1238)
T ss_pred HhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh---HHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhh
Confidence 34445553 344455667777665544332111 11111111111 1447899999999999887 233344 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHH
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSY---NNVLGL 782 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l~~~ 782 (856)
....++-+....+..+.|...+-+.....+++..+...|...+.-..+-..-..+.++..+. +......| ...-..
T Consensus 1077 Ll~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel~kl-~k~e~~~~~~~ll~e~i 1155 (1238)
T KOG1127|consen 1077 LLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEELEKL-LKLEWFCWPPGLLKELI 1155 (1238)
T ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHh-hhhHHhccChhHHHHHH
Confidence 44555556677888889998888888888888887777777666555444444444444332 11011111 233356
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003020 783 YAVDGRFKDVIGTFKDMVNAAIQP-DDFTFKSLG 815 (856)
Q Consensus 783 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 815 (856)
|.++||-.-..+.+++.+-. -| |+..|..|-
T Consensus 1156 ~~~~~r~~~vk~~~qr~~h~--~P~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1156 YALQGRSVAVKKQIQRAVHS--NPGDPALWSLLS 1187 (1238)
T ss_pred HHHhhhhHHHHHHHHHHHhc--CCCChHHHHHHH
Confidence 78889988889999988773 34 444454443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.4e-12 Score=120.22 Aligned_cols=320 Identities=12% Similarity=0.122 Sum_probs=237.6
Q ss_pred hcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCCCh
Q 003020 507 ERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDK------CSYNSLIQILAGADLP 580 (856)
Q Consensus 507 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~~~~ 580 (856)
-..+.++|...|..+.+..+.+..+.-++++.|...|..|.|+.+.+.+.++ ||. .....|..-|...|-+
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 3566778888888888888888888888888998999999999988888775 432 2345566778888999
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 003020 581 HMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDV----VVYGVLINAFADVGNVKQAQSY 656 (856)
Q Consensus 581 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~ 656 (856)
|.|+.+|..+.+.+ ..-......|+..|-...++++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999998888754 223455777888999999999999999998887654432 2455566666677889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 003020 657 FDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA 736 (856)
Q Consensus 657 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 736 (856)
+.+..+.+ +..+..--.+++.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.++...++.++.+..+.
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 99998875 45556666788899999999999999999998765445667888999999999999999999999887533
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003020 737 NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYA---VDGRFKDVIGTFKDMVNAAIQPDDFTFKS 813 (856)
Q Consensus 737 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 813 (856)
+..-..+...-....-.+.|...+.+-+... |+...++-++.... ..|++.+-+.++++|+...++-++ .|
T Consensus 282 -~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~-~Y-- 355 (389)
T COG2956 282 -ADAELMLADLIELQEGIDAAQAYLTRQLRRK--PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKP-RY-- 355 (389)
T ss_pred -ccHHHHHHHHHHHhhChHHHHHHHHHHHhhC--CcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcC-Cc--
Confidence 3334445554445555667776666666553 67777777776654 446688888899999875433222 12
Q ss_pred HHHHHHHcCHHHHHhhcchhhHHHHHH
Q 003020 814 LGAVLMKCGLELTRKKNAQSGLQAWMS 840 (856)
Q Consensus 814 l~~~~~~~G~~~~~~~~~~~~~~~~~~ 840 (856)
-|.+||+..-.-.+..|+.+.|.+
T Consensus 356 ---RC~~CGF~a~~l~W~CPsC~~W~T 379 (389)
T COG2956 356 ---RCQNCGFTAHTLYWHCPSCRAWET 379 (389)
T ss_pred ---eecccCCcceeeeeeCCCcccccc
Confidence 256777665555667777777764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9e-10 Score=115.02 Aligned_cols=433 Identities=15% Similarity=0.169 Sum_probs=278.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003020 322 YTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLH 401 (856)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 401 (856)
.|....+-.+...|+-++|....+.-++.++. +.+.|..+.-.+....++++|++.|..+...+ +.|...+.-+.-.-
T Consensus 42 eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ 119 (700)
T KOG1156|consen 42 ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQ 119 (700)
T ss_pred hhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 44445555566778888888888887776554 66788888777777888888888888888765 56777888777777
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCC-CCCCHhhHHHH------HHHHHHc
Q 003020 402 AKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGG-LEIDEYTQSAL------TRMYIEA 474 (856)
Q Consensus 402 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l------~~~~~~~ 474 (856)
++.|+++........+.+.. +.....|..+..++.-.|++..|..+++...+.. -.|+...+... .....+.
T Consensus 120 ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~ 198 (700)
T KOG1156|consen 120 IQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEA 198 (700)
T ss_pred HHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 78888888877777777653 2345677778888888888888888888876654 23454443322 2344566
Q ss_pred CChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHH-HHHH
Q 003020 475 GMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKAC-NLFD 553 (856)
Q Consensus 475 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~ 553 (856)
|.+++|.+.+......--.....--.-++.+.+.+++++|..++......+|.+...|..+..++.+-.+.-+++ .+|.
T Consensus 199 g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~ 278 (700)
T KOG1156|consen 199 GSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYA 278 (700)
T ss_pred ccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 777777666554432221222222334778888999999999999999888888888888888876333333444 5666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH----HCC
Q 003020 554 SMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMI----RFN 629 (856)
Q Consensus 554 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~ 629 (856)
...+. .+........=+.......-.+..-+++...++.|+++ ++..+.+.|-.-...+--.++.-.+. ..|
T Consensus 279 ~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~ 354 (700)
T KOG1156|consen 279 ILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTG 354 (700)
T ss_pred HHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhccccc
Confidence 55543 11111111111111112333445556677777777654 33344433322221111111111111 111
Q ss_pred ----------CCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 630 ----------VEPDVVVYGV--LINAFADVGNVKQAQSYFDAMESAGLPPNA-VIYNSLIKLYTKVGYLKEAQETYKLLR 696 (856)
Q Consensus 630 ----------~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 696 (856)
-+|....|.. ++..+-+.|+++.|..+++..+.. .|+. ..|..-.+.+.+.|++++|..++++..
T Consensus 355 ~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~ 432 (700)
T KOG1156|consen 355 MFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ 432 (700)
T ss_pred CCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 1456665554 566677899999999999999876 4554 567777788999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CC----HHHHHHH--HHHHHHcCCHHHHHHHHHHH
Q 003020 697 SLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD---AN----EFTYAMM--LIMYKRNGRFEEATRIAKQM 764 (856)
Q Consensus 697 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~----~~~~~~l--~~~~~~~g~~~~A~~~~~~~ 764 (856)
+.+. +|...-..-+.-..++++.++|.++.....+.+. .| .-.|..+ +.+|.++|++-+|++-+..+
T Consensus 433 elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 433 ELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 8664 7776655666667788999999999988877652 11 1134333 56788888887776655444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-10 Score=109.21 Aligned_cols=439 Identities=12% Similarity=0.052 Sum_probs=215.5
Q ss_pred cCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHH
Q 003020 171 QSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVC 250 (856)
Q Consensus 171 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 250 (856)
..++..|+.+++.....+ -+....+-..+...+.+.|++++|...|...... -.|+...+..+.-++.-.|.+.+|..
T Consensus 35 ~rDytGAislLefk~~~~-~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLD-REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred cccchhHHHHHHHhhccc-hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHH
Confidence 356777777777665443 1111223333455666777777777777666553 33466666667666667777777766
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHH
Q 003020 251 WLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDT 330 (856)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 330 (856)
+-.+..+ ++..-..+.+.-.+.++-++-..+.+.+.+ +..---+|...
T Consensus 113 ~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD---------------------------~~EdqLSLAsv 160 (557)
T KOG3785|consen 113 IAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD---------------------------TLEDQLSLASV 160 (557)
T ss_pred HHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh---------------------------hHHHHHhHHHH
Confidence 6555432 222233344455566666666666555432 01112223333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHH-HHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHH
Q 003020 331 YGKAGQLKEASETFAQMLREGIVPTTVTFNTMI-HIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISM 409 (856)
Q Consensus 331 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 409 (856)
....-.+.+|+++|.+.+.. .|+....|..+ -+|.+..-++-+.+++.-.++. ++.++.+-|.......+.=.-..
T Consensus 161 hYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ 237 (557)
T KOG3785|consen 161 HYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRT 237 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccch
Confidence 33344566777777777654 23444444433 2344666666666666666633 34445555555544444322223
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHH
Q 003020 410 ASRYFWKMKEANLEPDIVSYRTLLYAYSIR-----RMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWF 484 (856)
Q Consensus 410 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 484 (856)
|..-...+.+.+-+ . | ..+.-.++. ..-+.|++++--+
T Consensus 238 ae~E~k~ladN~~~-~---~-~f~~~l~rHNLVvFrngEgALqVLP~L-------------------------------- 280 (557)
T KOG3785|consen 238 AEDEKKELADNIDQ-E---Y-PFIEYLCRHNLVVFRNGEGALQVLPSL-------------------------------- 280 (557)
T ss_pred hHHHHHHHHhcccc-c---c-hhHHHHHHcCeEEEeCCccHHHhchHH--------------------------------
Confidence 33333333322110 0 0 111111111 1222333332222
Q ss_pred HHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc-------cCCHHHHHHHHHHHHh
Q 003020 485 RRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGM-------GRNYDKACNLFDSMTS 557 (856)
Q Consensus 485 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~~A~~~~~~m~~ 557 (856)
. ..-+++..+++-.|.+++++.+|..+..... |.++.-|..-.-.+.. .....-|.+.|+-.-+
T Consensus 281 ---~---~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~ 351 (557)
T KOG3785|consen 281 ---M---KHIPEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGE 351 (557)
T ss_pred ---H---hhChHhhhhheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcc
Confidence 2 2334555666667777777777776655443 3333333322222222 2334556666665554
Q ss_pred CCCCCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003020 558 HGAVPDKC-SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVV 636 (856)
Q Consensus 558 ~~~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 636 (856)
.+..-|.. .-.++...+.-..++|+++..+..+..--...|.. -..+..+++..|.+.+|.++|-++....++ |..+
T Consensus 352 Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~ 429 (557)
T KOG3785|consen 352 SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAEELFIRISGPEIK-NKIL 429 (557)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHH
Confidence 44332221 12333444444455666666665555443222332 233556666667777777776655433222 3334
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 637 YG-VLINAFADVGNVKQAQSYFDAMESAGLPPNAVI-YNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 637 ~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
|. .+.++|.+.++++-|+.++-++.. +.+..+ ...+.+-|-+.+.+--|-+.|+.+..
T Consensus 430 Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 430 YKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 43 344556666666666655443321 222222 23334455566666666666665555
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.7e-09 Score=109.82 Aligned_cols=468 Identities=12% Similarity=0.106 Sum_probs=299.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhcc
Q 003020 232 YGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVEN 311 (856)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (856)
|..++++| ..++|...++..+.+++. .+--..+....+-.+...|+-++|.........
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr------------------- 69 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR------------------- 69 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhc-------------------
Confidence 33444444 566777788887777763 222233444444556677888888877765431
Q ss_pred CCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH
Q 003020 312 GSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDT 391 (856)
Q Consensus 312 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 391 (856)
+...+.+.|..++-.+....++++|+..|...+..+. .|...+-.+.-.-...|+++.....-.+..+.. +...
T Consensus 70 ----~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~r 143 (700)
T KOG1156|consen 70 ----NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQR 143 (700)
T ss_pred ----cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhH
Confidence 3344668888888888888888899998888887542 245566655555556677777777766666543 4455
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCHHhHHHHH------HHHHhcCCHHHHHHHHHHHhcCCCCCCHhhH
Q 003020 392 RTYNILIFLHAKNDKISMASRYFWKMKEAN-LEPDIVSYRTLL------YAYSIRRMVCEAEELISEMDGGGLEIDEYTQ 464 (856)
Q Consensus 392 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll------~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 464 (856)
..|..+.-++.-.|++..|..+.+...+.. -.|+...+.... ......|..++|++.+..-... +.......
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~ 222 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFE 222 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHh
Confidence 677888888888888888888888877543 135554444332 2345667778887776654332 11122233
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHH-HHHHHHhcCCCCcHHHHHHHHHHHHccC
Q 003020 465 SALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAE-RAFICCQEGKKLTVLVFNVMVKAYGMGR 543 (856)
Q Consensus 465 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~li~~~~~~g 543 (856)
-.-...+.+.+++++|..++..+...+|.+...+..+..++++-....++. .+|....+..+.....-..=++......
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~ee 302 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEE 302 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcch
Confidence 445677888999999999999999999999888888888887444444444 6676666655433222222222222223
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH----cC----------CCCChHhH--HHHHH
Q 003020 544 NYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQE----AG----------LVSDCIPY--CAVIS 607 (856)
Q Consensus 544 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~----------~~~~~~~~--~~l~~ 607 (856)
-.+..-.++..+.+.|+++-...+.+ .+-.....+-..++...+.. .| -+|....| --++.
T Consensus 303 l~~~vdkyL~~~l~Kg~p~vf~dl~S---Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laq 379 (700)
T KOG1156|consen 303 LKEIVDKYLRPLLSKGVPSVFKDLRS---LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQ 379 (700)
T ss_pred hHHHHHHHHHHHhhcCCCchhhhhHH---HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHH
Confidence 33444456666777777654333333 23222222211122211111 11 13444444 44567
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003020 608 SYMKLGQLEMAEEVYKDMIRFNVEPDVV-VYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLK 686 (856)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 686 (856)
.|-..|+++.|...++.++.. .|+.. .|..-.+.+...|.+++|..++++..+.+ .+|...=.--+.-..++.+.+
T Consensus 380 h~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 380 HYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred HHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccH
Confidence 788899999999999999875 56654 77777788999999999999999999876 566665556777788999999
Q ss_pred HHHHHHHHHHhCCCC--CCHH----HHHHH--HHHHHHcCCHHHHHHHHHHHHhC
Q 003020 687 EAQETYKLLRSLEAS--PDVY----TSNCM--IDLYSERSMVRQAEEIFEIMKKK 733 (856)
Q Consensus 687 ~A~~~~~~~~~~~~~--p~~~----~~~~l--~~~~~~~g~~~~A~~~~~~~~~~ 733 (856)
+|.++.....+.|.. .+.. .|-.+ +.+|.+.|++..|++-|..+.+.
T Consensus 457 eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 457 EAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred HHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999888776541 1111 22222 45677888888888777666543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-10 Score=125.76 Aligned_cols=588 Identities=13% Similarity=0.084 Sum_probs=328.1
Q ss_pred HhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCc
Q 003020 183 WFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEP 262 (856)
Q Consensus 183 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 262 (856)
.+...| ..|+-++|.++|.-|+..|+.+.|- +|.-|.-++.+.+...++.++.+....++.+.+. .|
T Consensus 15 ~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep 81 (1088)
T KOG4318|consen 15 LHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EP 81 (1088)
T ss_pred HHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CC
Confidence 333344 7889999999999999999999888 8988888777778888999998888888777664 56
Q ss_pred cHHHHHHHHHHHHhcCChhH---HHHHHHHHhhhccccCCcc--hhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCH
Q 003020 263 DEVTMGIVVQMYKKAGEFQK---AEEFFKKWSSRESLRHGED--TKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQL 337 (856)
Q Consensus 263 ~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 337 (856)
-..+|..+..+|...||+.- .++.++.+.. .-...+.. ....+..+ ...+..-||.. +.+.-..-.|-+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~-sfs~~Gvgs~e~~fl~k~--~c~p~~lpda~---n~illlv~eglw 155 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILFEVVEQDLESINQ-SFSDHGVGSPERWFLMKI--HCCPHSLPDAE---NAILLLVLEGLW 155 (1088)
T ss_pred chhHHHHHHHHHHhccchHHHHHHHHHHHHHHh-hhhhhccCcHHHHHHhhc--ccCcccchhHH---HHHHHHHHHHHH
Confidence 77899999999999998655 3332222110 00000000 00000000 01122222222 233444455666
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 003020 338 KEASETFAQMLREGIVPTTVTFNTMIHIYGN-NDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWK 416 (856)
Q Consensus 338 ~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 416 (856)
+.+++++..+...... . ++...++-+.. ...+++...+.....+ .|+..+|.++++.-.-.|+.+.|..++.+
T Consensus 156 aqllkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 6676666655332111 1 11112333322 2233333333333332 58999999999999999999999999999
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch
Q 003020 417 MKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSE 496 (856)
Q Consensus 417 m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (856)
|.++|++-+..-|..|+-+ .++..-++.++.-|.+.|+.|+..|+...+..+...|....+.. +.....
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~sq~~h 298 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GSQLAH 298 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------ccchhh
Confidence 9999998888877777766 78888888999999999999999999988887777555322211 111111
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHH------------HH-hcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--C
Q 003020 497 GYSANIDGYGERGHVLEAERAFI------------CC-QEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGA--V 561 (856)
Q Consensus 497 ~~~~l~~~~~~~g~~~~A~~~~~------------~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~ 561 (856)
.+.+-.....-.| ..|.+..+ +. .-.......+|...+.. ..+|.-++..++-..+..--. .
T Consensus 299 g~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s 375 (1088)
T KOG4318|consen 299 GFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDS 375 (1088)
T ss_pred hhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccC
Confidence 2222222222222 11111111 10 00111122444433332 235666666666666543211 1
Q ss_pred C-CHHHHHHHHHHHHcCCChHHHHHHHH--HHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC---
Q 003020 562 P-DKCSYNSLIQILAGADLPHMAKRYLR--KMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRF----NVE--- 631 (856)
Q Consensus 562 p-~~~~~~~ll~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--- 631 (856)
+ +...|..++.-|.+.-+......++. +.++.. .+....-.+.....+. +...+.+-+...... ...
T Consensus 376 ~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~ 452 (1088)
T KOG4318|consen 376 GQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLN--LNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWP 452 (1088)
T ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccch
Confidence 1 22334333333332211111111111 111100 0000000011111111 111111111111100 000
Q ss_pred ----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH
Q 003020 632 ----PDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSL--EASPDVY 705 (856)
Q Consensus 632 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~ 705 (856)
+-...-+.++..++..-+..+++..-++....-+ + ..|..|++-++...+.+.|..++++.... .+..|..
T Consensus 453 ~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~ 529 (1088)
T KOG4318|consen 453 LIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLP 529 (1088)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccH
Confidence 1112334555666666566666654444433221 2 57889999999999999999998887552 2234556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKG---DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGL 782 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 782 (856)
-+..+.+.+.+.+....+..+++++.+.- +....++..+.......|+.+.-.+.++-+...|..- + .-+..+
T Consensus 530 ~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e---t-gPl~~v 605 (1088)
T KOG4318|consen 530 LMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE---T-GPLWMV 605 (1088)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh---c-ccceEE
Confidence 67788889999999999999999887744 2224466677777788888888888888777776552 1 334455
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003020 783 YAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMK 820 (856)
Q Consensus 783 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 820 (856)
..+.++...|.++++...+. ++|.+..-..+-+...+
T Consensus 606 hLrkdd~s~a~ea~e~~~qk-yk~~P~~~e~lcrlv~k 642 (1088)
T KOG4318|consen 606 HLRKDDQSAAQEAPEPEEQK-YKPYPKDLEGLCRLVYK 642 (1088)
T ss_pred EeeccchhhhhhcchHHHHH-hcCChHHHHHHHHHHHh
Confidence 66677777777777665443 45555444444444443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-10 Score=111.59 Aligned_cols=274 Identities=16% Similarity=0.111 Sum_probs=148.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHH
Q 003020 404 NDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLW 483 (856)
Q Consensus 404 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 483 (856)
.++.++|.+.|-+|.+.. +.+..+.-+|...|-+.|..+.|+++.+.+.+.. |. |+..-
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---dl-T~~qr---------------- 106 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---DL-TFEQR---------------- 106 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CC-chHHH----------------
Confidence 355666666666666532 1233444556666666666666666666665431 11 11000
Q ss_pred HHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 003020 484 FRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPD 563 (856)
Q Consensus 484 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 563 (856)
.-+...++.-|...|-++.|+.+|....+.+..-..+...++..|....+|++|+++-+++.+.+-.+.
T Consensus 107 -----------~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 107 -----------LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred -----------HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence 012334556667777777777777777766555677777888888888888888888888777654443
Q ss_pred HH----HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003020 564 KC----SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGV 639 (856)
Q Consensus 564 ~~----~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 639 (856)
.. .|--+...+....+.+.|...+.+..+... ..+..--.+.+.+...|+++.|++.++.+.+.++.--..+...
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 22 233333344445566666666666555431 1222333445555666666666666666665543333445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003020 640 LINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLY 714 (856)
Q Consensus 640 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 714 (856)
|..+|.+.|+.++....+.++.+.. ++...-..+.+.-....-.+.|...+.+-+. -.|+...+..+++.-
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhh
Confidence 6666666666666666666665542 2222223333333333333444444333222 235555555555543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.5e-10 Score=119.21 Aligned_cols=247 Identities=15% Similarity=0.124 Sum_probs=149.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHH
Q 003020 568 NSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFN--VEPDVVVYGVLINAFA 645 (856)
Q Consensus 568 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~ 645 (856)
+.++..|++.-+..+++..-++....-+ ...|..|+.-+....+.+.|....++..... ...|..-+..+.+.+.
T Consensus 463 ~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 463 NQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 3444555555555555543333332211 1458888888888888999998888876432 2345566777888888
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 646 DVGNVKQAQSYFDAMESAG-LPPN-AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQA 723 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 723 (856)
+.+....+..++.++.+.- ..|+ ..++.-+.+.....|+.+.-.+.++-+...|+.-+ .-++....+.++...|
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a 615 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAA 615 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhh
Confidence 8899999999998886631 1232 34555666667778888887777777666554331 1222233344555555
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHH---------------------HHHHcCCHHHHHHHHHHH--HHcC----------CC
Q 003020 724 EEIFEIMKKKGDANEFTYAMMLI---------------------MYKRNGRFEEATRIAKQM--RESG----------LI 770 (856)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~l~~---------------------~~~~~g~~~~A~~~~~~~--~~~~----------~~ 770 (856)
.+.++...+...+.+.....+.. .|.+.|+..+|.++.+.- .-.. +.
T Consensus 616 ~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~ 695 (1088)
T KOG4318|consen 616 QEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIV 695 (1088)
T ss_pred hhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccc
Confidence 55555444444333332222222 245555555555543310 0000 00
Q ss_pred C---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHH
Q 003020 771 S---------DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCGLE 824 (856)
Q Consensus 771 p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G~~ 824 (856)
| +..-..-++..|.+.|+++.|..+|.++. +.|...+...|...|.+.-.+
T Consensus 696 ~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~e 755 (1088)
T KOG4318|consen 696 PLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEE 755 (1088)
T ss_pred cHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchh
Confidence 0 11222347778999999999999999987 799999999999998887733
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-09 Score=118.90 Aligned_cols=561 Identities=11% Similarity=-0.019 Sum_probs=307.7
Q ss_pred CHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHH
Q 003020 209 KWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFK 288 (856)
Q Consensus 209 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 288 (856)
+...|...|-+.++.++. -...|..|+..|+...+...|.+.|+++.+.. ..|..........|....+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 456666677666665544 55678888888887778888888888888764 2256677777888888888888888743
Q ss_pred HHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc
Q 003020 289 KWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGN 368 (856)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 368 (856)
...+.. ....-...|-...-.|...++...|+.-|+..++..++ |...|..++.+|.+
T Consensus 551 ~~~qka---------------------~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~ 608 (1238)
T KOG1127|consen 551 RAAQKA---------------------PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPE 608 (1238)
T ss_pred HHhhhc---------------------hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHh
Confidence 332110 00001122333444455666666666666666665433 55566666666666
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc------CCCCCHHhHHHHHHHHHhcCCH
Q 003020 369 NDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEA------NLEPDIVSYRTLLYAYSIRRMV 442 (856)
Q Consensus 369 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~~~ll~~~~~~g~~ 442 (856)
.|.+..|.++|.++...+ |.+...---..-..+..|++.+|...+...... +...-..++..+...+...|-.
T Consensus 609 sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~ 687 (1238)
T KOG1127|consen 609 SGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQ 687 (1238)
T ss_pred cCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 666666666666655442 111111111223334556666666666554421 0011122333333333333333
Q ss_pred HHHHHHHHHHh-------cCCCCCCHhhHHHHHHH-----------------------HHHcCCh---H---HHHHHHHH
Q 003020 443 CEAEELISEMD-------GGGLEIDEYTQSALTRM-----------------------YIEAGML---E---KSWLWFRR 486 (856)
Q Consensus 443 ~~A~~~~~~~~-------~~~~~p~~~~~~~l~~~-----------------------~~~~g~~---~---~a~~~~~~ 486 (856)
.+|.+.+++.+ ......+...+..+..+ ....+.. | -+.+.+-.
T Consensus 688 ~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~ 767 (1238)
T KOG1127|consen 688 KKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA 767 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH
Confidence 33333332222 11111111111111111 1111111 1 00011100
Q ss_pred HHhcCCCCchhhHHHHHHHhh--------cCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 003020 487 FHLAGDMSSEGYSANIDGYGE--------RGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSH 558 (856)
Q Consensus 487 ~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 558 (856)
- ..-...+..|.+++..|.+ ..+...|+..+.+.......+...||.+.-. ...|++.-|..-|-+....
T Consensus 768 h-lsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s 845 (1238)
T KOG1127|consen 768 H-LSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS 845 (1238)
T ss_pred H-HHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc
Confidence 0 0011235667777655544 2233467777888777777788888888766 6667777777777665554
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCH
Q 003020 559 GAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMI----RFNVEPDV 634 (856)
Q Consensus 559 ~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~ 634 (856)
.+....+|..+.-.+....+++.|...|....... +.+...|......-...|+.-++..+|...- ..|--++.
T Consensus 846 -ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f 923 (1238)
T KOG1127|consen 846 -EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKF 923 (1238)
T ss_pred -cccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchh
Confidence 23366778888888888899999999998887754 3455556666666667788888888877632 22333455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCH
Q 003020 635 VVYGVLINAFADVGNVKQAQSYFDAMES---------AGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS-LEASPDV 704 (856)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~ 704 (856)
.-|-........+|+.++-+...+++.. .+.+.....|...+....+.+.+++|.+...+... ....-+.
T Consensus 924 ~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~ 1003 (1238)
T KOG1127|consen 924 QYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDE 1003 (1238)
T ss_pred hHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5554444445566666654444333322 24456667888888888888888888888876543 1122333
Q ss_pred HHHH----HHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCH-HHHHH
Q 003020 705 YTSN----CMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI-SDL-LSYNN 778 (856)
Q Consensus 705 ~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~-~~~~~ 778 (856)
..|+ .+.+.++..|.++.|...+...... .+..+...- -+..-.|+++++.+.|++++..--. .|. .....
T Consensus 1004 sqynvak~~~gRL~lslgefe~A~~a~~~~~~e--vdEdi~gt~-l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~k 1080 (1238)
T KOG1127|consen 1004 SQYNVAKPDAGRLELSLGEFESAKKASWKEWME--VDEDIRGTD-LTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCK 1080 (1238)
T ss_pred hhhhhhhhhhhhhhhhhcchhhHhhhhcccchh--HHHHHhhhh-HHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHH
Confidence 3333 3445556666666555443322110 111111111 1113456778888888887765221 122 33445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 003020 779 VLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 779 l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
++.+....+..+.|...+-+.+.
T Consensus 1081 va~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1081 VAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHHHHhhcccchHHHHHHHHHHH
Confidence 55556666777777766666555
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.9e-11 Score=119.44 Aligned_cols=200 Identities=12% Similarity=0.103 Sum_probs=168.6
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003020 599 CIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKL 678 (856)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 678 (856)
...+..+...+...|++++|...++++++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..++..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4557778888889999999999999988764 3356788888888999999999999999998764 5567788888899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 679 YTKVGYLKEAQETYKLLRSLEAS-PDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEA 757 (856)
Q Consensus 679 ~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 757 (856)
+...|++++|.+.|+++.+.... .....+..+..++...|++++|...++++....|.+...+..++..+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998874322 23456777888899999999999999999998888888999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 758 TRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 758 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
...++++.+..+. ++..+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQ-TAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988543 677888888999999999999998888765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.6e-10 Score=110.29 Aligned_cols=286 Identities=14% Similarity=0.094 Sum_probs=169.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHH
Q 003020 404 NDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLW 483 (856)
Q Consensus 404 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 483 (856)
.|++..|++...+-.+.+-. ....|..-..+.-+.|+.+.+-+.+.++.+....++.......
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltr---------------- 159 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTR---------------- 159 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHH----------------
Confidence 57777777777776655432 2334444555556667777777766666654323333333333
Q ss_pred HHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 003020 484 FRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPD 563 (856)
Q Consensus 484 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 563 (856)
......+|++..|..-.....+..|..+........+|.+.|++.+...++.++.+.+.-.+
T Consensus 160 ------------------arlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~ 221 (400)
T COG3071 160 ------------------ARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSD 221 (400)
T ss_pred ------------------HHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCCh
Confidence 34444555555555555566666677788888888888888888888888888888876554
Q ss_pred HH-------HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003020 564 KC-------SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVV 636 (856)
Q Consensus 564 ~~-------~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 636 (856)
.. +|..+++-....+..+.-...++..-.. ...++..-.+++.-+..+|+.++|.++..+..+.+..|+.
T Consensus 222 ~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L-- 298 (400)
T COG3071 222 EEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL-- 298 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH--
Confidence 33 4555555544444444433344333221 2334555556666666677777777777776666544441
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003020 637 YGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE 716 (856)
Q Consensus 637 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 716 (856)
..+ -.+.+-++...-++..++-.+. .+.++..+.+|+..|.+.+.|.+|...|+...+ ..|+..+|+.+.+++.+
T Consensus 299 -~~~-~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~ 373 (400)
T COG3071 299 -CRL-IPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQ 373 (400)
T ss_pred -HHH-HhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHH
Confidence 111 1334455555555555555443 244446666666666677777777776665555 34666666666666666
Q ss_pred cCCHHHHHHHHHHHHh
Q 003020 717 RSMVRQAEEIFEIMKK 732 (856)
Q Consensus 717 ~g~~~~A~~~~~~~~~ 732 (856)
.|+..+|.+..++...
T Consensus 374 ~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 374 LGEPEEAEQVRREALL 389 (400)
T ss_pred cCChHHHHHHHHHHHH
Confidence 6666666666665553
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-09 Score=112.36 Aligned_cols=421 Identities=14% Similarity=0.063 Sum_probs=241.2
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHHcCC
Q 003020 398 IFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDE-YTQSALTRMYIEAGM 476 (856)
Q Consensus 398 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 476 (856)
..+.+..|+++.|+..|.+.....+ ++.+.|..-..+|+..|++++|++=-.+-++ +.|+. ..|+..+.++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhccc
Confidence 3566778999999999988887653 5788888888899999999988876666554 35553 478888888888899
Q ss_pred hHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHH---HHHHHHhcCC----CCcHHHHHHHHHHHHcc-------
Q 003020 477 LEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAE---RAFICCQEGK----KLTVLVFNVMVKAYGMG------- 542 (856)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~----~~~~~~~~~li~~~~~~------- 542 (856)
+++|+.-|.+-+...|.+......+.+++.......+.. .++....... ......|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 999999998888888888888888887772211110000 0000000000 00111222222221110
Q ss_pred ---CCHHHHHHHHHHHH-----hCC-------CCC------------C----------HHHHHHHHHHHHcCCChHHHHH
Q 003020 543 ---RNYDKACNLFDSMT-----SHG-------AVP------------D----------KCSYNSLIQILAGADLPHMAKR 585 (856)
Q Consensus 543 ---g~~~~A~~~~~~m~-----~~~-------~~p------------~----------~~~~~~ll~~~~~~~~~~~A~~ 585 (856)
.+...+...+.... ..+ ..| | ..-...++++..+..+++.+++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 00111111110000 000 000 0 0012233444444445555555
Q ss_pred HHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHH
Q 003020 586 YLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGV-------LINAFADVGNVKQAQSYFD 658 (856)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g~~~~A~~~~~ 658 (856)
-+...++.. .+..-++....+|...|.+.+....-...++.|-. ...-|+. +..+|.+.++++.|+..|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 555544433 33333444445555555555544444444433311 1111111 2223334444555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 003020 659 AMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVY-TSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN 737 (856)
Q Consensus 659 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 737 (856)
+....--.|+. ..+....++++.......-. .|... -...-+..+.+.|++..|+..|.+++...|.|
T Consensus 323 kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D 391 (539)
T KOG0548|consen 323 KALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED 391 (539)
T ss_pred HHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch
Confidence 54332111111 11222233333333332221 23221 11222566778999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003020 738 EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAV 817 (856)
Q Consensus 738 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 817 (856)
...|...+.+|.+.|.+..|++-.+..++++|. ....|.--+.++....+|++|.+.|++.++. .|+..-+.--+.-
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRR 468 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 999999999999999999999999999999876 6788888899999999999999999999985 5766544333333
Q ss_pred HHHc--C----HHHHHhhcchhhHHHH
Q 003020 818 LMKC--G----LELTRKKNAQSGLQAW 838 (856)
Q Consensus 818 ~~~~--G----~~~~~~~~~~~~~~~~ 838 (856)
|..+ | .+..++.+.+|..+..
T Consensus 469 c~~a~~~~~~~ee~~~r~~~dpev~~i 495 (539)
T KOG0548|consen 469 CVEAQRGDETPEETKRRAMADPEVQAI 495 (539)
T ss_pred HHHHhhcCCCHHHHHHhhccCHHHHHH
Confidence 3332 2 4455555555555544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-08 Score=100.25 Aligned_cols=299 Identities=13% Similarity=0.054 Sum_probs=195.2
Q ss_pred HhcCCHHHHHHHHHHHhcCC-CCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHH
Q 003020 437 SIRRMVCEAEELISEMDGGG-LEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAE 515 (856)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 515 (856)
+-.++...|..++--+.... ++.+...+..+...+...|+.++|...|++....+|....+....+-.+.+.|++++-.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHH
Confidence 34555555655555443332 44566677888888888888888888888888888887777777777788888888777
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 003020 516 RAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGL 595 (856)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 595 (856)
.+...+......+...|..-+......++++.|+.+-++.++... .+...|-.-..++...+++++|.-.|+.+....
T Consensus 287 ~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 287 ALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 776666655555556666666666677777788777777766422 133444444556667777777777777766542
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003020 596 VSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLI-NAFAD-VGNVKQAQSYFDAMESAGLPPNAVIYN 673 (856)
Q Consensus 596 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~ 673 (856)
+.+...|..|+.+|...|++.+|.-+-+...+. .+.+..+...+. ..+.- ...-++|..++++.+... |.-....+
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~ 442 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVN 442 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHH
Confidence 345666777777777777777776666655543 233444554442 22221 223466777777766542 22234556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH
Q 003020 674 SLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTY 741 (856)
Q Consensus 674 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 741 (856)
.+...+...|.+++++.++++.+. ..||....+.|++.+...+.+++|.+.|..+++.+|.|..+.
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 666777777777777777777665 346777777777777777777777777777777766665443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-11 Score=117.00 Aligned_cols=236 Identities=13% Similarity=0.012 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 565 CSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAF 644 (856)
Q Consensus 565 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 644 (856)
..-+.+...|.+.|.+.+|.+.++..+++. |-+.||..|-..|.+..+++.|+.+|.+-++. .+-|+....-+.+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 344678888999999999999999888864 56667888889999999999999999998875 233555555677788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003020 645 ADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAE 724 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 724 (856)
...++.++|.++|+...+.. +.++....++...|.-.++.+-|+.+|+++++.|+ .+...|+.+.-+|.-.++++-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhH
Confidence 88899999999999998874 66777888888888889999999999999999887 67788889998999999999999
Q ss_pred HHHHHHHhCCC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 725 EIFEIMKKKGD-A--NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 725 ~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
.-|+++..... + -..+|..++......|++..|.+.|+-++..++. +..++++|+-.-.+.|+.++|..+++....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 99998887652 2 2458999999999999999999999999998877 789999999999999999999999998776
Q ss_pred cCCCCCH
Q 003020 802 AAIQPDD 808 (856)
Q Consensus 802 ~g~~p~~ 808 (856)
+-|+.
T Consensus 458 --~~P~m 462 (478)
T KOG1129|consen 458 --VMPDM 462 (478)
T ss_pred --hCccc
Confidence 45654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-08 Score=105.55 Aligned_cols=254 Identities=16% Similarity=0.141 Sum_probs=121.5
Q ss_pred cccccccccCCccccccccccc--ccccccccccccCCchhHHHhhccccccHHHHhhHhhhhcChhHHHHHHHhcCCHH
Q 003020 98 VDVRIGNERRTDVISAVCVNGE--VQTKCSTKWARYGGCIPSMLQALDTVKDLDEALKPWAENLSNKERSIILKEQSSWE 175 (856)
Q Consensus 98 ~~l~~~y~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~ 175 (856)
..-+++|.|.|++..|...... .+..+ ...+..+..++.+..-++.|=..|.+.-+++.....++...-+.
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~d-------e~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~ 691 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLAD-------EEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFG 691 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhcc-------HHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHH
Confidence 5567778888888776653321 12111 01223445555555555555555554444433333333333344
Q ss_pred HHHHHHHHhHHcCCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 003020 176 RALEIFEWFKRQECHELNVIHY-NIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLER 254 (856)
Q Consensus 176 ~A~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 254 (856)
.|.++-..+ +|..+++. ..-..-+...|+++.|+..|-+.. .....+.+......+.+|+.+++.
T Consensus 692 kaielarfa-----fp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildn 757 (1636)
T KOG3616|consen 692 KAIELARFA-----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDN 757 (1636)
T ss_pred HHHHHHHhh-----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHH
Confidence 444443332 22222211 112223334455555555553322 112334444455566666666666
Q ss_pred HHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhc
Q 003020 255 MNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKA 334 (856)
Q Consensus 255 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 334 (856)
+.... .-..-|..+..-|...|+++.|+++|-+. ..++-.|..|.+.
T Consensus 758 iqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~-------------------------------~~~~dai~my~k~ 804 (1636)
T KOG3616|consen 758 IQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA-------------------------------DLFKDAIDMYGKA 804 (1636)
T ss_pred hhhhc--cccccchHHHHHhccchhHHHHHHHHHhc-------------------------------chhHHHHHHHhcc
Confidence 55442 12234455556666666666666666543 2345556666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 003020 335 GQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYF 414 (856)
Q Consensus 335 g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 414 (856)
|++++|.++-.+.. |.......|..-..-+-..|++.+|.+++-.+. .|+. .|.+|-+.|..+..+++.
T Consensus 805 ~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 805 GKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred ccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHH
Confidence 66666666655542 222233344444444455566666655554332 2322 244555555555555444
Q ss_pred HH
Q 003020 415 WK 416 (856)
Q Consensus 415 ~~ 416 (856)
++
T Consensus 874 ~k 875 (1636)
T KOG3616|consen 874 EK 875 (1636)
T ss_pred HH
Confidence 43
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.1e-07 Score=96.96 Aligned_cols=268 Identities=14% Similarity=0.185 Sum_probs=165.1
Q ss_pred HHHHHHHhCCCC--CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 550 NLFDSMTSHGAV--PDKCSYNSLIQILAGADLPHMAKRYLRKMQEAG--LVSDCIPYCAVISSYMKLGQLEMAEEVYKDM 625 (856)
Q Consensus 550 ~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (856)
++.++....+++ .|+...+.-+.++...+-+.+-+++++++.-.. +..+...-+.|+-... .-+..+..+..+++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHh
Confidence 455565555443 356666777788888888888888888865322 1122222333333222 23344555555554
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------CCCCCHHHHHHHHHHHHhcCC
Q 003020 626 IRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESA---------------------GLPPNAVIYNSLIKLYTKVGY 684 (856)
Q Consensus 626 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------------~~~p~~~~~~~l~~~~~~~g~ 684 (856)
-.-+ .|++. ..+...+-+++|..+|++.-.. .--..+..|..+..+-.+.|.
T Consensus 1047 dnyD-a~~ia------~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1047 DNYD-APDIA------EIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred ccCC-chhHH------HHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCc
Confidence 4322 12211 1122233334444443332110 001245678888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003020 685 LKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQM 764 (856)
Q Consensus 685 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 764 (856)
+.+|++-|-+. .|+..|..+++...+.|.|++-..++..+.+.. ..+.+=..|+.+|++.++..+-+++..
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~id~eLi~AyAkt~rl~elE~fi~-- 1190 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV-REPYIDSELIFAYAKTNRLTELEEFIA-- 1190 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCccchHHHHHHHHHhchHHHHHHHhc--
Confidence 88888776542 456677888888888888888888888777654 222333567888888888777655432
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--HHHHHhhcchhhHHHHHHHH
Q 003020 765 RESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG--LELTRKKNAQSGLQAWMSTL 842 (856)
Q Consensus 765 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G--~~~~~~~~~~~~~~~~~~~~ 842 (856)
.|+......+++-|...|.|+.|.-+|...- .|..|...|.+.| ..++-..-...+.+.|...-
T Consensus 1191 -----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1191 -----GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVC 1256 (1666)
T ss_pred -----CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 2677778888888888888888887776533 3788888888888 33333334556789999887
Q ss_pred hhHhhh
Q 003020 843 SSVIEE 848 (856)
Q Consensus 843 ~~~~~~ 848 (856)
..|++.
T Consensus 1257 faCvd~ 1262 (1666)
T KOG0985|consen 1257 FACVDK 1262 (1666)
T ss_pred HHHhch
Confidence 777764
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.4e-10 Score=126.34 Aligned_cols=182 Identities=11% Similarity=-0.008 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 580 PHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDA 659 (856)
Q Consensus 580 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (856)
+++|...++++++.. +.+...+..+...+...|++++|...|+++++.+ +.+...+..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445555555555443 2234445555555555555555555555555543 22344555555555555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH
Q 003020 660 MESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEF 739 (856)
Q Consensus 660 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 739 (856)
+.+.+ |.+...+..++..+...|++++|+..++++.+...+.+...+..+..++...|++++|...++++....|.+..
T Consensus 398 Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~ 476 (553)
T PRK12370 398 CLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLI 476 (553)
T ss_pred HHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHH
Confidence 55543 11222222233334445555555555555544321112333444555555555555555555555444444444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 740 TYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 740 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
..+.+...|...| ++|...++++.+
T Consensus 477 ~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 477 AVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 4455555555554 244444444443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-11 Score=115.62 Aligned_cols=234 Identities=12% Similarity=0.064 Sum_probs=202.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 003020 532 FNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMK 611 (856)
Q Consensus 532 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 611 (856)
-+.+.++|.+.|.+.+|.+.|+..++. .|-+.||..|-.+|.+.+++..|+.++.+-++. ++-|+.....+...+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 366888999999999999999988876 456678888889999999999999999988875 34555556777888899
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 612 LGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQET 691 (856)
Q Consensus 612 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 691 (856)
.++.++|.++|+...+.. +.++.+...+...|.-.++++-|+.+|++++..|+ .++..|..++-+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999999874 44777888888888899999999999999999994 6888999999999999999999999
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003020 692 YKLLRSLEASPD--VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 692 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 769 (856)
|++.+..--.|+ ...|-.+.......|++.-|.+-|+-.+..++.+..+++.|+-.-.+.|+.++|..+++.+....|
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 999887444454 446888888888999999999999999999999999999999999999999999999999988765
Q ss_pred C
Q 003020 770 I 770 (856)
Q Consensus 770 ~ 770 (856)
.
T Consensus 461 ~ 461 (478)
T KOG1129|consen 461 D 461 (478)
T ss_pred c
Confidence 4
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-08 Score=101.64 Aligned_cols=148 Identities=15% Similarity=0.113 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003020 614 QLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFD--------AMESAGLPPNAVIYNSLIKLYTKVGYL 685 (856)
Q Consensus 614 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~ 685 (856)
.+..|..++...-+..+.....+.-.++......|+++.|++++. .+.+.+..|. +...+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCC
Confidence 466777777776655433335566666777778888888888887 5555544443 444566667777766
Q ss_pred HHHHHHHHHHHhC--CCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 686 KEAQETYKLLRSL--EASPDVYTSNC----MIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATR 759 (856)
Q Consensus 686 ~~A~~~~~~~~~~--~~~p~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 759 (856)
+-|..++...... ...+......+ ++..-.+.|+-++|..+++++.+..|+|..+...++.+|+.. +.+.|+.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHH
Confidence 6666666555431 11122222223 233334678888888888888888888888888888888776 5667766
Q ss_pred HHHHH
Q 003020 760 IAKQM 764 (856)
Q Consensus 760 ~~~~~ 764 (856)
+-+++
T Consensus 513 l~k~L 517 (652)
T KOG2376|consen 513 LSKKL 517 (652)
T ss_pred HhhcC
Confidence 65443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-10 Score=128.45 Aligned_cols=202 Identities=13% Similarity=0.114 Sum_probs=159.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 612 LGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQET 691 (856)
Q Consensus 612 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 691 (856)
.+++++|...++++++.+ +.+...+..+...+...|++++|...|+++.+.+ |.+...+..++.++...|++++|+..
T Consensus 317 ~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 356899999999999875 3377888889889999999999999999999875 66678899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 692 YKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG-DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 692 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
++++.+..+. +...+..++..+...|++++|+..++++.... |.++..+..++.++...|++++|...++++....+.
T Consensus 395 ~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 395 INECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 9999985532 22233344555667899999999999998775 557778889999999999999999999998776554
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 003020 771 SDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA-AIQPDDFTFKSLGAVLM 819 (856)
Q Consensus 771 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~ 819 (856)
+....+.+...|...| ++|...++++.+. .-.|....+..++.++.
T Consensus 474 -~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 520 (553)
T PRK12370 474 -GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAH 520 (553)
T ss_pred -hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHH
Confidence 5667788888888888 5888888887762 23444444444444433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.3e-09 Score=108.00 Aligned_cols=460 Identities=13% Similarity=0.022 Sum_probs=259.8
Q ss_pred HHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003020 272 QMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREG 351 (856)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 351 (856)
++.+..|+++.|...|-.... .+ +++.+.|..-..+|...|++++|++--.+-.+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~----------------------l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~-- 64 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIM----------------------LS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR-- 64 (539)
T ss_pred HhhcccccHHHHHHHHHHHHc----------------------cC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--
Confidence 456678999999999987652 22 23778999999999999999999887777666
Q ss_pred CCCCHH-hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHH
Q 003020 352 IVPTTV-TFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYR 430 (856)
Q Consensus 352 ~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 430 (856)
+.|+.. .|+....++.-.|++++|..-|.+-++.. +.|...++.+..++... . .+.+.|. ++..|.
T Consensus 65 l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~---------~p~~~~ 131 (539)
T KOG0548|consen 65 LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFT---------KPYFHE 131 (539)
T ss_pred cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-Hhhhhcc---------CcHHHH
Confidence 467754 89999999999999999999999999775 66778888888877111 0 1111111 111111
Q ss_pred HH-----HHHHHhcCCHHHHHHHHHHHhc---CCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHH
Q 003020 431 TL-----LYAYSIRRMVCEAEELISEMDG---GGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANI 502 (856)
Q Consensus 431 ~l-----l~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 502 (856)
.+ .+.+.....+..-++.+.+-.. .... |+....++.... ..+.. ....-.......+..+. ....
T Consensus 132 ~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~-d~r~m~a~~~l~-~~~~~--~~~~~~~~~~~~~~~p~--~~~~ 205 (539)
T KOG0548|consen 132 KLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN-DPRLMKADGQLK-GVDEL--LFYASGIEILASMAEPC--KQEH 205 (539)
T ss_pred HhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc-cHHHHHHHHHHh-cCccc--cccccccccCCCCCCcc--cccC
Confidence 11 1111111111111111111000 0000 111111111000 00000 00000000000000000 0000
Q ss_pred HHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHH
Q 003020 503 DGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHM 582 (856)
Q Consensus 503 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 582 (856)
...-..++..+-.+. ..-..-...++++..+..+++.|++-+....+.. -+..-++....++...|.+..
T Consensus 206 ~~~~~~~d~~ee~~~--------k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~ 275 (539)
T KOG0548|consen 206 NGFPIIEDNTEERRV--------KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAE 275 (539)
T ss_pred CCCCccchhHHHHHH--------HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHH
Confidence 000000000000000 0011223344555555555666666666555542 233334444455555555555
Q ss_pred HHHHHHHHHHcCCCC--C----hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 583 AKRYLRKMQEAGLVS--D----CIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSY 656 (856)
Q Consensus 583 A~~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 656 (856)
+...-....+.|... + ...+..+..+|.+.++++.|+..|.+.+.....|+. ..+....++++..
T Consensus 276 c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~ 346 (539)
T KOG0548|consen 276 CIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKE 346 (539)
T ss_pred hhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHH
Confidence 555444444433110 0 011222344666778889999999887754333332 2233345566655
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003020 657 FDAMESAGLPPNA-VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD 735 (856)
Q Consensus 657 ~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 735 (856)
.+...-.+ |.. .-...-+..+.+.|++..|+..|.++++.. +.|...|....-+|.+.|.+..|+.-.+..++..|
T Consensus 347 ~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p 423 (539)
T KOG0548|consen 347 AERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP 423 (539)
T ss_pred HHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc
Confidence 55544433 222 333444777889999999999999988865 35677899999999999999999999999999989
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 736 ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKD 798 (856)
Q Consensus 736 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 798 (856)
+....|..=+.++....+|+.|.+.|++.++.+|. +......+.+++..+...+...++.++
T Consensus 424 ~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~-~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 424 NFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS-NAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 88888988888999999999999999999998876 666667777776654333444444444
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-08 Score=103.48 Aligned_cols=449 Identities=13% Similarity=0.057 Sum_probs=266.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 003020 328 IDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKI 407 (856)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 407 (856)
++-+...|++++|.....+++..+ +-+...+..-+-++...+++++|+.+.+.-... ..+.+.+---..+..+.++.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 556778899999999999999875 335556766677888999999999666553311 11111111223445578999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHHcCChHHHHHHHHH
Q 003020 408 SMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEI-DEYTQSALTRMYIEAGMLEKSWLWFRR 486 (856)
Q Consensus 408 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 486 (856)
++|+..++-.. +.+..+...-...+.+.|++++|+++|+.+.+.+.+- +...-..++.+-... .+. +.+.
T Consensus 96 Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~-~~q~ 166 (652)
T KOG2376|consen 96 DEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ-LLQS 166 (652)
T ss_pred HHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH-HHHh
Confidence 99999988332 1344466666788899999999999999998876432 222222222221111 111 2222
Q ss_pred HHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHh--------cCCCCc-------HHHHHHHHHHHHccCCHHHHHHH
Q 003020 487 FHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQ--------EGKKLT-------VLVFNVMVKAYGMGRNYDKACNL 551 (856)
Q Consensus 487 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~ 551 (856)
.......+.+...+.+-.+...|++.+|+++++.+. .....+ ..+--.+.-++...|+.++|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 222223344556667888899999999999998872 111111 12344456677789999999999
Q ss_pred HHHHHhCCCCCCHHH----HHHHHHHHHcCCChH-HHHHHHHHHHHc-----------CCCCChHhHHHHHHHHHhcCCH
Q 003020 552 FDSMTSHGAVPDKCS----YNSLIQILAGADLPH-MAKRYLRKMQEA-----------GLVSDCIPYCAVISSYMKLGQL 615 (856)
Q Consensus 552 ~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~-~A~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~ 615 (856)
|...+..... |... -|.++..-....-++ .++..++..... ........-+.++..| .+..
T Consensus 247 y~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~ 323 (652)
T KOG2376|consen 247 YVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKM 323 (652)
T ss_pred HHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhH
Confidence 9999987543 4322 222222211111111 111122111110 0000111112233333 2333
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 003020 616 EMAEEVYKDMIRFNVEPDVVVYGVLINAFA--DVGNVKQAQSYFDAMESAGLPPN-AVIYNSLIKLYTKVGYLKEAQETY 692 (856)
Q Consensus 616 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 692 (856)
+.+.++-..... ..|. ..+.+++..+. +...+..|.+++....+.. +-+ ..+.-.++......|+++.|++++
T Consensus 324 ~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 324 DQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 444443333221 1222 33444444332 2235777888887776653 333 455666777788999999999999
Q ss_pred H--------HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHHcCCHHHH
Q 003020 693 K--------LLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG-------DANEFTYAMMLIMYKRNGRFEEA 757 (856)
Q Consensus 693 ~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A 757 (856)
. .+.+.+..|..+ ..+...+.+.++.+.|..++.++...- +.-..++.-++..-.+.|+-++|
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 8 555555555544 456677777777666777766554322 11122334444455577999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 758 TRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDM 799 (856)
Q Consensus 758 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 799 (856)
...++++.+..+. |..+...++.+|++. +.+.|..+-+++
T Consensus 478 ~s~leel~k~n~~-d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 478 SSLLEELVKFNPN-DTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHhCCc-hHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999998876 889999999988875 567777665543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-10 Score=119.40 Aligned_cols=251 Identities=16% Similarity=0.220 Sum_probs=176.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHc-----C-CCCChHh-HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CC
Q 003020 566 SYNSLIQILAGADLPHMAKRYLRKMQEA-----G-LVSDCIP-YCAVISSYMKLGQLEMAEEVYKDMIRF-----NV-EP 632 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~ 632 (856)
+...+...|...|+++.|..+++..++. | ..|.+.+ .+.+...|...+++++|..+|++++.. |. .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444555555555555555555554443 1 1222222 334677888899999999999988752 21 12
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC
Q 003020 633 D-VVVYGVLINAFADVGNVKQAQSYFDAMESA-----G-LPPNA-VIYNSLIKLYTKVGYLKEAQETYKLLRSL---EAS 701 (856)
Q Consensus 633 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 701 (856)
. ..+++.|..+|.+.|++++|..++++..+. | ..|.. ..++.++..++..+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2 347788888899999999988888776541 2 12233 34677888899999999999999876651 122
Q ss_pred CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 003020 702 PD----VYTSNCMIDLYSERSMVRQAEEIFEIMKKKG--------DANEFTYAMMLIMYKRNGRFEEATRIAKQMRES-- 767 (856)
Q Consensus 702 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 767 (856)
++ ..+++.|...|...|++++|.++++++++.. +.....++.|+..|.+.+++.+|.++|.+....
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 3488999999999999999999999887654 122347889999999999999999999887654
Q ss_pred --CCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH------cCCCCCHHHHHHHHH
Q 003020 768 --GLI-SDL-LSYNNVLGLYAVDGRFKDVIGTFKDMVN------AAIQPDDFTFKSLGA 816 (856)
Q Consensus 768 --~~~-p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~g~~p~~~~~~~l~~ 816 (856)
||. |+. .+|.+|+.+|.+.|++++|.++.+.... ....|+.........
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLA 499 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhh
Confidence 443 233 6789999999999999999999988874 123455554444433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.6e-07 Score=97.52 Aligned_cols=493 Identities=14% Similarity=0.110 Sum_probs=254.7
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHhHHcCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHH
Q 003020 161 NKERSIILKEQSSWERALEIFEWFKRQEC--HELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDV 238 (856)
Q Consensus 161 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 238 (856)
...++.+..+.|-+.+|++.|........ .+-+...=..++. |...-.+++..+++..|+..+++-|..+.-.+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~-yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVN-YFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33455566667777788877765433210 0000000012333 33334578888888888888887777777777777
Q ss_pred HHcCCCHHHHHHHHHHHHhC-----------CCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhh--------------
Q 003020 239 CSKGGLKEEAVCWLERMNEG-----------GMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSR-------------- 293 (856)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------------- 293 (856)
|..+=-.+.-+++|+..... ++.-|+.+.-..|.+-|+.|++.+.+++.++-.--
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 76665566677777766532 23456667777888889999988888876543110
Q ss_pred -ccccCC------------------cchhhhhhhhccCCcCCCCc-----------CH-hHHHHH------------HHH
Q 003020 294 -ESLRHG------------------EDTKTMIGKVENGSHVNGSL-----------SS-YTYNTL------------IDT 330 (856)
Q Consensus 294 -~~~~~~------------------~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~l------------i~~ 330 (856)
..+.+- +++...++.+-.-..+...| +. ..-+.+ ..-
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~E 847 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEE 847 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHH
Confidence 000000 01112222221111111111 01 111111 122
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHH----------HHHHHHHHhCCC----------CCC
Q 003020 331 YGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEV----------DSLIKKMEELHC----------PPD 390 (856)
Q Consensus 331 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A----------~~~~~~~~~~~~----------~~~ 390 (856)
.-+.++..--...++..++.|.. |..++|.|.+.|...++-.+- ..+=.--.+++. ..|
T Consensus 848 vEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 22333444445556667777776 888999888888654322110 000000000100 001
Q ss_pred H---------HHHHHHHHHHHccCChHHH-----------HHHHHHHHHcCCC--CCHHhHHHHHHHHHhcCCHHHHHHH
Q 003020 391 T---------RTYNILIFLHAKNDKISMA-----------SRYFWKMKEANLE--PDIVSYRTLLYAYSIRRMVCEAEEL 448 (856)
Q Consensus 391 ~---------~~~~~li~~~~~~g~~~~A-----------~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~ 448 (856)
. ..|-....-+.+..+.+-- ..+.++..+.+++ .|+..-..-..++...+-+.+-+++
T Consensus 927 ~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 927 LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHH
Confidence 1 1122222222223332211 2233444443321 2344444556666677777777777
Q ss_pred HHHHhcCCCC-CCHhhHHHH----------------------------HHHHHHcCChHHHHHHHHHHHhcCCCCchhhH
Q 003020 449 ISEMDGGGLE-IDEYTQSAL----------------------------TRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYS 499 (856)
Q Consensus 449 ~~~~~~~~~~-p~~~~~~~l----------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 499 (856)
++++.-.... .....+..+ ...+...+-+++|..+|++.. .+..+..
T Consensus 1007 LEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~----~n~~A~~ 1082 (1666)
T KOG0985|consen 1007 LEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD----MNVSAIQ 1082 (1666)
T ss_pred HHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc----ccHHHHH
Confidence 7776532211 111111111 222333344455555554432 1111211
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 003020 500 ANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADL 579 (856)
Q Consensus 500 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 579 (856)
.++. .-+..+.|.+.-+++ ..+.+|..+..+-.+.|...+|++-|-+. .|+..|..+++...+.|.
T Consensus 1083 VLie---~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~ 1148 (1666)
T KOG0985|consen 1083 VLIE---NIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGK 1148 (1666)
T ss_pred HHHH---HhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCc
Confidence 1111 122333333333332 24678888888888888888888776553 366778888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 580 PHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDA 659 (856)
Q Consensus 580 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (856)
+++-.+++..+.+..-.|.+ -+.|+-+|++.++..+-.+.+ ..||......+.+-|...|.++.|.-+|..
T Consensus 1149 ~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~ 1219 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN 1219 (1666)
T ss_pred HHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH
Confidence 88888888777776655544 356777788887776655443 246666666677777777777776666544
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 660 MESAGLPPNAVIYNSLIKLYTKVGYLKEAQET 691 (856)
Q Consensus 660 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 691 (856)
. ..|..|...+...|++..|...
T Consensus 1220 v---------SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1220 V---------SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred h---------hhHHHHHHHHHHHHHHHHHHHH
Confidence 3 2344445555555555555444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.4e-09 Score=108.86 Aligned_cols=194 Identities=18% Similarity=0.212 Sum_probs=145.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 003020 328 IDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKI 407 (856)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 407 (856)
|.+.....++.+|+.+++.+..+.. -..-|..+...|...|+++.|.++|.+.. .++-.|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 4445566778888888887766422 23356778889999999999999997643 346678899999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHH
Q 003020 408 SMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRF 487 (856)
Q Consensus 408 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 487 (856)
+.|.++-.+.. |.......|.+-..-+-.+|++.+|.++|-.+. .|+ ..+.+|-+.|..++.+.+.++.
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 99998877764 334455667777777888999999998886553 233 3467899999999988888776
Q ss_pred HhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 003020 488 HLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFD 553 (856)
Q Consensus 488 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 553 (856)
+ +..-.++...++.-|...|+...|+.-|-++.+ |..-++.|...+.|++|.++-+
T Consensus 877 h--~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 877 H--GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred C--hhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHHhhhhhhHHHHHHHHh
Confidence 6 233456677788889999999999998876543 7777888888888888876654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-08 Score=98.57 Aligned_cols=299 Identities=12% Similarity=0.031 Sum_probs=138.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHH
Q 003020 467 LTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYD 546 (856)
Q Consensus 467 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 546 (856)
++..+...|++.+|+..|..+.+.+|.+..++...+..|...|+..-|+.-+.+..+..|.-..+-..-...+.++|.++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 34444444555555555555554445555555555555555555555555555555544443444444445555555555
Q ss_pred HHHHHHHHHHhCCCCCCH--------------HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 003020 547 KACNLFDSMTSHGAVPDK--------------CSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKL 612 (856)
Q Consensus 547 ~A~~~~~~m~~~~~~p~~--------------~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 612 (856)
.|..-|+.++.+...... ......+..+...|+...|+.+...+++.. +.|...|..-..+|...
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~ 202 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAE 202 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhc
Confidence 555555555554211100 011122233444555555666655555542 34555555555556666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-H---HHHH---HH------HH
Q 003020 613 GQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAV-I---YNSL---IK------LY 679 (856)
Q Consensus 613 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~---~~~l---~~------~~ 679 (856)
|++..|+.-++.+.+.. ..+...+--+-..+...|+.+.++...++.++.+ |+.. + |..+ .. ..
T Consensus 203 ~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ 279 (504)
T KOG0624|consen 203 GEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQA 279 (504)
T ss_pred CcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655555554432 2234444444455555566666655555555542 3331 1 1111 11 11
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHH
Q 003020 680 TKVGYLKEAQETYKLLRSLEASPDVYT---SNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEE 756 (856)
Q Consensus 680 ~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 756 (856)
...++|.++++..+...+......... +..+-.++...+++.+|+....++++..|.|..++.--+.+|.-...+++
T Consensus 280 ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~ 359 (504)
T KOG0624|consen 280 IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDD 359 (504)
T ss_pred HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHH
Confidence 223444444444444444222111111 11222333344445555555555554444444555555555544445555
Q ss_pred HHHHHHHHHHcCC
Q 003020 757 ATRIAKQMRESGL 769 (856)
Q Consensus 757 A~~~~~~~~~~~~ 769 (856)
|+.-|+++.+.++
T Consensus 360 AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 360 AIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHhcCc
Confidence 5555555554443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-07 Score=100.34 Aligned_cols=530 Identities=12% Similarity=0.132 Sum_probs=291.5
Q ss_pred hcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CC-------C-CcChhhHHHHHHHHH
Q 003020 170 EQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSV-KG-------I-VPINSTYGTLIDVCS 240 (856)
Q Consensus 170 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-------~-~p~~~~~~~l~~~~~ 240 (856)
.-|+.+.|.+.-+.++ +..+|..|.+++.+..+.+-|...+..|.. +| . .|+ .+=....-...
T Consensus 740 tiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAi 811 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAI 811 (1416)
T ss_pred EeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHH
Confidence 3578888877666554 356799999999998888888777766542 11 1 111 22223333446
Q ss_pred cCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcC
Q 003020 241 KGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLS 320 (856)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (856)
..|..++|..+|++-.+. ..+-..|..+|.+++|.++-+.-.. -.-
T Consensus 812 eLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR-------------------------iHL 857 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR-------------------------IHL 857 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc-------------------------eeh
Confidence 789999999999987653 3444567788999999998875321 011
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHH----------HHCCC---------CCCHHhHHHHHHHHhcCCCHHHHHHHHHH
Q 003020 321 SYTYNTLIDTYGKAGQLKEASETFAQM----------LREGI---------VPTTVTFNTMIHIYGNNDQLAEVDSLIKK 381 (856)
Q Consensus 321 ~~~~~~li~~~~~~g~~~~A~~~~~~~----------~~~g~---------~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 381 (856)
..||.....-+-..++.+.|++.|++. +...+ ..|...|......+...|+.+.|+.++..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 246666666666778888888887653 22111 12334455555555667778888777776
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCH
Q 003020 382 MEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDE 461 (856)
Q Consensus 382 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 461 (856)
... |-+++...|-+|+.++|-++-++- .|......|.+.|-..|++.+|..+|-+..
T Consensus 938 A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-------- 994 (1416)
T KOG3617|consen 938 AKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ-------- 994 (1416)
T ss_pred hhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH--------
Confidence 652 456677777788888888776653 355666678888888888888888887764
Q ss_pred hhHHHHHHHHHHcCChHH---------------HHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHH------
Q 003020 462 YTQSALTRMYIEAGMLEK---------------SWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFIC------ 520 (856)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~---------------a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------ 520 (856)
++.+.++.|-..+.-|+ |-..|+... .-....+..|.+.|.+.+|+++--.
T Consensus 995 -afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g-------~~~~~AVmLYHkAGm~~kALelAF~tqQf~a 1066 (1416)
T KOG3617|consen 995 -AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG-------GYAHKAVMLYHKAGMIGKALELAFRTQQFSA 1066 (1416)
T ss_pred -HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc-------hhhhHHHHHHHhhcchHHHHHHHHhhcccHH
Confidence 23334444333332222 222222211 0111224456666666666654211
Q ss_pred ---Hhc-C-CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-C
Q 003020 521 ---CQE-G-KKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEA-G 594 (856)
Q Consensus 521 ---~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~ 594 (856)
+.+ . ...|+...+.-.+.++...++++|..++-...+ |...+..|...+ ..--.++-+.|--. .
T Consensus 1067 L~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd 1136 (1416)
T KOG3617|consen 1067 LDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKD 1136 (1416)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcC
Confidence 111 1 124566666667777777777777776665543 233333333332 22222222222111 0
Q ss_pred CCCCh----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH----------------H
Q 003020 595 LVSDC----IPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQA----------------Q 654 (856)
Q Consensus 595 ~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----------------~ 654 (856)
-.|+. .....+...|.++|.+..|-+-|.++-. + -.-++++.+.|+.++- -
T Consensus 1137 ~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd---K------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAA 1207 (1416)
T KOG3617|consen 1137 DMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD---K------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAA 1207 (1416)
T ss_pred CCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh---H------HHHHHHHHhcCCcceEEEEeeccccceeeeehh
Confidence 11222 2355566677777877777766655421 1 1234555566654431 1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 003020 655 SYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG 734 (856)
Q Consensus 655 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 734 (856)
.+++ ..+...++.+...++..|.+..-++---.+|+...... ...|...-. ..|-.++|..-+.++..+.
T Consensus 1208 NyLQ---tlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqiE----iee~q~ydK---a~gAl~eA~kCl~ka~~k~ 1277 (1416)
T KOG3617|consen 1208 NYLQ---TLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQIE----IEELQTYDK---AMGALEEAAKCLLKAEQKN 1277 (1416)
T ss_pred hhhh---hcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHhh----HHHHhhhhH---HhHHHHHHHHHHHHHHhhc
Confidence 2221 12334455555555555555444444444444333311 111111111 1223344444444444332
Q ss_pred CCCHHHHHHHH----------HHHH-HcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 735 DANEFTYAMML----------IMYK-RNGRFEEATRIAKQMRESGLISD----LLSYNNVLGLYAVDGRFKDVIGTFKDM 799 (856)
Q Consensus 735 ~~~~~~~~~l~----------~~~~-~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 799 (856)
.....++.|- .... -..+..+.++-...+++.-..|| ...|..++..|....+|..|-+.+++|
T Consensus 1278 -~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el 1356 (1416)
T KOG3617|consen 1278 -MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTEL 1356 (1416)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 1111222221 1111 11255555666666666533333 356788889999999999999999999
Q ss_pred HHc
Q 003020 800 VNA 802 (856)
Q Consensus 800 ~~~ 802 (856)
..+
T Consensus 1357 ~~k 1359 (1416)
T KOG3617|consen 1357 QKK 1359 (1416)
T ss_pred hhc
Confidence 875
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.4e-10 Score=110.06 Aligned_cols=200 Identities=19% Similarity=0.169 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 565 CSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAF 644 (856)
Q Consensus 565 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 644 (856)
..+..+...+...|++++|...++++++.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555555432 2334556666677777777777777777777654 33555666777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 645 ADVGNVKQAQSYFDAMESAGL-PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQA 723 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 723 (856)
...|++++|...+++...... +.....+..+..++...|++++|...+++..+... .+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHH
Confidence 777888888888877765421 22345666777778888888888888888777432 2455677777888888888888
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 724 EEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
...++++.+..+.++..+..++..+...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88888887776777777777888888888888888887777654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.1e-08 Score=104.98 Aligned_cols=259 Identities=15% Similarity=0.132 Sum_probs=159.7
Q ss_pred HHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003020 272 QMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREG 351 (856)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 351 (856)
..+...|++++|+..++.... ...............+.+.|+.++|..+|..+++.+
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~-----------------------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN 68 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK-----------------------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN 68 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh-----------------------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 445678899999998876431 122223456777888889999999999999998875
Q ss_pred CCCCHHhHHHH-HHHHhc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHcCCCC
Q 003020 352 IVPTTVTFNTM-IHIYGN-----NDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKI-SMASRYFWKMKEANLEP 424 (856)
Q Consensus 352 ~~p~~~~~~~l-l~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~ 424 (856)
|+...|... ..+..- ..+.+...++++++.+.- |...+...+.-.+.....+ ..+..++..++.+|+|+
T Consensus 69 --Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs 144 (517)
T PF12569_consen 69 --PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS 144 (517)
T ss_pred --CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch
Confidence 555555444 444421 235677788888877542 3333332222222221222 34555666777777643
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcC----C----------CCCCH--hhHHHHHHHHHHcCChHHHHHHHHHHH
Q 003020 425 DIVSYRTLLYAYSIRRMVCEAEELISEMDGG----G----------LEIDE--YTQSALTRMYIEAGMLEKSWLWFRRFH 488 (856)
Q Consensus 425 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~----------~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 488 (856)
+|+.+-..|.......-..+++...... + -.|.. .++..+.+.|...|++++|+...++..
T Consensus 145 ---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI 221 (517)
T PF12569_consen 145 ---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI 221 (517)
T ss_pred ---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4445555555444444444444443321 1 11222 244555666777777777777777777
Q ss_pred hcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 003020 489 LAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGA 560 (856)
Q Consensus 489 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 560 (856)
...|...+.|..-+..+-..|++.+|.+..+.+...+..|-.+-+..+..+.+.|+.++|.+++....+.+.
T Consensus 222 ~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 222 EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 777777777777777777777777777777777777777766667777777777777777777776665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.4e-10 Score=118.41 Aligned_cols=205 Identities=23% Similarity=0.354 Sum_probs=130.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHH
Q 003020 532 FNVMVKAYGMGRNYDKACNLFDSMTSH-----G--AVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCA 604 (856)
Q Consensus 532 ~~~li~~~~~~g~~~~A~~~~~~m~~~-----~--~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 604 (856)
.+.+...|...+++++|..+|++++.. | .+.-..+++.|..+|.+.|++++|...++.+.+
T Consensus 244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~------------ 311 (508)
T KOG1840|consen 244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE------------ 311 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH------------
Confidence 334667777777777777777776543 1 111123444444555555555555544333322
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHH
Q 003020 605 VISSYMKLGQLEMAEEVYKDMIRFNVEPDVV-VYGVLINAFADVGNVKQAQSYFDAMESA---GLPP----NAVIYNSLI 676 (856)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p----~~~~~~~l~ 676 (856)
+++..... ..|.+. .++.++..++..+++++|..++....+. -+.+ -..+++.|.
T Consensus 312 ----------------I~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~ 374 (508)
T KOG1840|consen 312 ----------------IYEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLA 374 (508)
T ss_pred ----------------HHHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 22221101 122332 4455666677778888887777766431 1111 235788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C---CCCHHHHH
Q 003020 677 KLYTKVGYLKEAQETYKLLRSL----EA--SPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKK----G---DANEFTYA 742 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~---~~~~~~~~ 742 (856)
..|.+.|++++|.++|++++.. +. .+. ...++.|...|.+.+++++|.++|.+.... + |....+|.
T Consensus 375 ~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~ 454 (508)
T KOG1840|consen 375 ELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYL 454 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 9999999999999999877652 11 122 346778888899999999998888765432 2 34456899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 003020 743 MMLIMYKRNGRFEEATRIAKQMR 765 (856)
Q Consensus 743 ~l~~~~~~~g~~~~A~~~~~~~~ 765 (856)
.|+.+|..+|++++|+++.+.+.
T Consensus 455 nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 455 NLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 99999999999999999998876
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.2e-08 Score=106.22 Aligned_cols=291 Identities=12% Similarity=0.089 Sum_probs=198.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc----
Q 003020 329 DTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKN---- 404 (856)
Q Consensus 329 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 404 (856)
..+...|++++|++.++.-... +......+......+.+.|+.++|..++..+++.+ |.|..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 4457889999999999886553 43334456677889999999999999999999886 55666667776666222
Q ss_pred -CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHH
Q 003020 405 -DKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMV-CEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWL 482 (856)
Q Consensus 405 -g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 482 (856)
...+...++|+++...- |.......+.-.+.....+ ..+...+..++..|++ .+++.+-..|....+.+-...
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 35677888999887654 4333333332223222223 3455566777777764 455555556665555444445
Q ss_pred HHHHHHhc---------------CCCCchhh--HHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCH
Q 003020 483 WFRRFHLA---------------GDMSSEGY--SANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNY 545 (856)
Q Consensus 483 ~~~~~~~~---------------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 545 (856)
++..+... .++..-.| .-++..|...|++++|++.++++++..|..+..|...+..+-+.|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 55444321 01111123 44577788888999999999888888888888888888899999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHh--------HHHHHHHHHhcCCHHH
Q 003020 546 DKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIP--------YCAVISSYMKLGQLEM 617 (856)
Q Consensus 546 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~ 617 (856)
++|.+.++........ |...-+..+..+.+.|+.++|.+++....+.+..|.... ......+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999888888876443 667777777888888888888888888876654222111 2444567788888888
Q ss_pred HHHHHHHHHH
Q 003020 618 AEEVYKDMIR 627 (856)
Q Consensus 618 A~~~~~~~~~ 627 (856)
|+..|..+.+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 8777776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8e-08 Score=95.10 Aligned_cols=186 Identities=12% Similarity=0.048 Sum_probs=86.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003020 611 KLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQE 690 (856)
Q Consensus 611 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 690 (856)
...+++.|+.+-++.++.+ +.++..+-.-...+...|++++|.-.|+..+... |-+..+|..|+..|...|++.||.-
T Consensus 312 ~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHH
Confidence 3444555555555554432 1233344334444445555555555555544432 2334455555555555555555544
Q ss_pred HHHHHHhCCCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003020 691 TYKLLRSLEASPDVYTSNCMI-DLYS-ERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESG 768 (856)
Q Consensus 691 ~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 768 (856)
.-+...+. +..+..+...++ ..+. ....-++|..++++.++..|.-..+.+.++..|...|++++++.++++.+..-
T Consensus 390 ~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~ 468 (564)
T KOG1174|consen 390 LANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF 468 (564)
T ss_pred HHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence 44333321 112222222221 1111 12223455555555555555555555555555555555555555555555432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 769 LISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 769 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
||....+.|+..+...+.+.+|.+.|..++.
T Consensus 469 --~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 469 --PDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred --cccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3445555555555555555555555555544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-09 Score=110.92 Aligned_cols=226 Identities=15% Similarity=0.082 Sum_probs=144.8
Q ss_pred CChHHHHHHHHHHHHcCC-CC--ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003020 578 DLPHMAKRYLRKMQEAGL-VS--DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQ 654 (856)
Q Consensus 578 ~~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 654 (856)
+..+.++..+.+++.... .| ....|..+...|...|+.++|...|+++++.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 344556666666654321 11 13446677777888888888888888888765 336778888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 003020 655 SYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG 734 (856)
Q Consensus 655 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 734 (856)
..|++..+.. |.+..+|..++.++...|++++|++.|++..+.. |+..........+...++.++|.+.+++.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 8888888764 4456777888888888888888888888887743 332211122223345677888888886655443
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003020 735 DANEFTYAMMLIMYKRNGRFEEATRIAKQMR-------ESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD 807 (856)
Q Consensus 735 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 807 (856)
+++... ........|+..++ +.++.+. +.++. ...+|..++.++...|++++|+..|++.++.. .||
T Consensus 196 ~~~~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~-~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~ 269 (296)
T PRK11189 196 DKEQWG---WNIVEFYLGKISEE-TLMERLKAGATDNTELAER-LCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN 269 (296)
T ss_pred CccccH---HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence 333222 22333345555443 2334443 22222 34678888888888888888888888888753 335
Q ss_pred HHHHHH
Q 003020 808 DFTFKS 813 (856)
Q Consensus 808 ~~~~~~ 813 (856)
.+-+..
T Consensus 270 ~~e~~~ 275 (296)
T PRK11189 270 FVEHRY 275 (296)
T ss_pred HHHHHH
Confidence 444443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.4e-09 Score=95.73 Aligned_cols=208 Identities=11% Similarity=-0.012 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 003020 195 IHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMY 274 (856)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 274 (856)
.+...|.-.|..+|++..|..-+++.++.++. +..+|..+...|.+.|..+.|.+.|++++...+. +-.+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 34566777888999999999999999988766 7778999999999999999999999999887533 566888888889
Q ss_pred HhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003020 275 KKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVP 354 (856)
Q Consensus 275 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 354 (856)
|.+|++++|...|++... .|.......+|..++-+..+.|+++.|.+.|++.++....
T Consensus 114 C~qg~~~eA~q~F~~Al~---------------------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~- 171 (250)
T COG3063 114 CAQGRPEEAMQQFERALA---------------------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ- 171 (250)
T ss_pred HhCCChHHHHHHHHHHHh---------------------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-
Confidence 999999999999988764 4555566788888898888999999999999998886433
Q ss_pred CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhH
Q 003020 355 TTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSY 429 (856)
Q Consensus 355 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 429 (856)
...+...+.....+.|++..|...++.....+ .++..+.-..|..--+.|+.+.|.+.=..+... -|...-|
T Consensus 172 ~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 172 FPPALLELARLHYKAGDYAPARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred CChHHHHHHHHHHhcccchHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 34567777788888888888888888888665 477777777777777888877777665555543 2444433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.5e-09 Score=94.80 Aligned_cols=206 Identities=12% Similarity=0.059 Sum_probs=162.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003020 602 YCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTK 681 (856)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 681 (856)
...|.-.|...|++..|..-++++++.. +.+..+|..+...|.+.|..+.|.+.|++.++.. |.+..+.|..+..+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4556677888899999999998888864 3356688888888888999999999998888864 5566888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003020 682 VGYLKEAQETYKLLRSLEASP-DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRI 760 (856)
Q Consensus 682 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 760 (856)
.|++++|...|++......-+ ...+|..++-+..+.|+.+.|.+.|++.++..|..+.+...+.....+.|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 899999999988887743222 2457778888888889999999999999988888888888888888899999999988
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003020 761 AKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFK 812 (856)
Q Consensus 761 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 812 (856)
+++....+. +...+.-..+..-...|+-+.|-++=.++.+ ..|...-|.
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q 244 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQ 244 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHH
Confidence 888888777 5777777777888888887777666555554 255554443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-07 Score=91.43 Aligned_cols=352 Identities=13% Similarity=0.115 Sum_probs=223.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCH
Q 003020 432 LLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHV 511 (856)
Q Consensus 432 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 511 (856)
+...+..+|++..|+.-|...++.++. +-.++-.-...|...|+-..|+.-+.+++...|.-..+....+..+.++|.+
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 444444455555555555544432111 1112222233444455555555555555555555445555555555556666
Q ss_pred HHHHHHHHHHhcCCCCc---H------------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003020 512 LEAERAFICCQEGKKLT---V------------LVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAG 576 (856)
Q Consensus 512 ~~A~~~~~~~~~~~~~~---~------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 576 (856)
++|..-|+......+.+ . ......+..+...|+...|+.....+++. .+.|...+..-..+|..
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHh
Confidence 66665555555544311 1 12223345566789999999999999987 34588888888999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHH---------HHH
Q 003020 577 ADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVV----YGVL---------INA 643 (856)
Q Consensus 577 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l---------~~~ 643 (856)
.|.+..|+.-++...+.. ..+...+--+-..+...|+.+.++...++.++. .||-.. |-.+ +..
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888877754 234555666677788999999999999999986 455432 2221 122
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC
Q 003020 644 FADVGNVKQAQSYFDAMESAGLPPNAV---IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD-VYTSNCMIDLYSERSM 719 (856)
Q Consensus 644 ~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 719 (856)
....+++.++++-.+..++........ .+..+-.++...|++.+|++...++++. .|+ +.++.--..+|.-..+
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEM 356 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHH
Confidence 345677888888888888764321223 3445556677889999999999999884 455 7788888899999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 720 VRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDM 799 (856)
Q Consensus 720 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 799 (856)
|+.|+.-|+.+.+.++.|..+- +.++-.+++.+..- -.-|+-++.+ -+.-.-.+..+.|.+|
T Consensus 357 YD~AI~dye~A~e~n~sn~~~r--------------eGle~Akrlkkqs~---kRDYYKILGV-kRnAsKqEI~KAYRKl 418 (504)
T KOG0624|consen 357 YDDAIHDYEKALELNESNTRAR--------------EGLERAKRLKKQSG---KRDYYKILGV-KRNASKQEITKAYRKL 418 (504)
T ss_pred HHHHHHHHHHHHhcCcccHHHH--------------HHHHHHHHHHHHhc---cchHHHHhhh-cccccHHHHHHHHHHH
Confidence 9999999999999887775543 23333333433311 1234444433 3344456777778887
Q ss_pred HHcCCCCCHH
Q 003020 800 VNAAIQPDDF 809 (856)
Q Consensus 800 ~~~g~~p~~~ 809 (856)
-.. ..||+.
T Consensus 419 Aqk-WHPDNF 427 (504)
T KOG0624|consen 419 AQK-WHPDNF 427 (504)
T ss_pred HHh-cCCccc
Confidence 664 567654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-06 Score=91.53 Aligned_cols=384 Identities=10% Similarity=0.121 Sum_probs=189.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 003020 331 YGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMA 410 (856)
Q Consensus 331 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 410 (856)
+-..|+.+.|+.+|..... |.++++..|-+|+.++|.++-++.. |....-.|...|-..|++.+|
T Consensus 922 lES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~A 986 (1416)
T KOG3617|consen 922 LESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKA 986 (1416)
T ss_pred HhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHH
Confidence 3345566666666554432 4455555555666666665555422 444555555666666666666
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHH---------------hcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcC
Q 003020 411 SRYFWKMKEANLEPDIVSYRTLLYAYS---------------IRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAG 475 (856)
Q Consensus 411 ~~~~~~m~~~~~~~~~~~~~~ll~~~~---------------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 475 (856)
...|.+... +...|+.|- ...+.-.|-+.|++.- .. +...+..|-+.|
T Consensus 987 v~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~~-----~~~AVmLYHkAG 1049 (1416)
T KOG3617|consen 987 VKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG---GY-----AHKAVMLYHKAG 1049 (1416)
T ss_pred HHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---hh-----hhHHHHHHHhhc
Confidence 666654432 111111111 1122223333444321 11 112334556666
Q ss_pred ChHHHHHHH---------HHHHh--cCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCC
Q 003020 476 MLEKSWLWF---------RRFHL--AGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRN 544 (856)
Q Consensus 476 ~~~~a~~~~---------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 544 (856)
.+.+|+++- +-+.+ ....++.....-.+.+....++++|..++-...+ |...+..|. ..+
T Consensus 1050 m~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~--------~~~AlqlC~-~~n 1120 (1416)
T KOG3617|consen 1050 MIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE--------FSGALQLCK-NRN 1120 (1416)
T ss_pred chHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHh-cCC
Confidence 666665542 11111 1234556666667888888888888777654432 222222222 222
Q ss_pred HHHHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH-
Q 003020 545 YDKACNLFDSMTSH-GAVPDK----CSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMA- 618 (856)
Q Consensus 545 ~~~A~~~~~~m~~~-~~~p~~----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A- 618 (856)
..-..++-+.|... .-.|+. .....+...|.++|.+..|-+-|.++-.+ ...+.++.+.|+.++-
T Consensus 1121 v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~ 1191 (1416)
T KOG3617|consen 1121 VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIR 1191 (1416)
T ss_pred CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEE
Confidence 22222222233211 123333 34666777889999998888777654321 2234556666665542
Q ss_pred ---------------HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003020 619 ---------------EEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVG 683 (856)
Q Consensus 619 ---------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 683 (856)
...++. .+.+.++.+...++..|.+..-++.--.+|+..... ...-|...-.+ .|
T Consensus 1192 FFAn~sRqkEiYImAANyLQt---lDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydKa---~g 1261 (1416)
T KOG3617|consen 1192 FFANTSRQKEIYIMAANYLQT---LDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDKA---MG 1261 (1416)
T ss_pred EEeeccccceeeeehhhhhhh---cccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhHH---hH
Confidence 222221 223445555555555554433333333333322211 11112211111 24
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHH----------HHHHH-HcCCHHHHHHHHHHHHhCCC-----CCHHHHHHHHHH
Q 003020 684 YLKEAQETYKLLRSLEASPDVYTSNCM----------IDLYS-ERSMVRQAEEIFEIMKKKGD-----ANEFTYAMMLIM 747 (856)
Q Consensus 684 ~~~~A~~~~~~~~~~~~~p~~~~~~~l----------~~~~~-~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~ 747 (856)
-.++|-+.+.++...+. ....++.| ++... -..+..+.+.-.+.|..... +-...|..|+..
T Consensus 1262 Al~eA~kCl~ka~~k~~--~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~ 1339 (1416)
T KOG3617|consen 1262 ALEEAAKCLLKAEQKNM--STTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIED 1339 (1416)
T ss_pred HHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHH
Confidence 44555555555544221 11122222 11111 12245555556666665542 224578889999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003020 748 YKRNGRFEEATRIAKQMRESGLISDLLSY 776 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 776 (856)
+....+|..|-+.++++..+.|..|..+|
T Consensus 1340 ~v~~k~y~~AyRal~el~~k~p~~~~s~~ 1368 (1416)
T KOG3617|consen 1340 HVSRKNYKPAYRALTELQKKVPNVDLSTF 1368 (1416)
T ss_pred HHhhhhccHHHHHHHHHhhcCCccchhcc
Confidence 99999999999999999998877665554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-08 Score=103.62 Aligned_cols=118 Identities=12% Similarity=-0.047 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHhcCC-CCCC--HhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHH
Q 003020 441 MVCEAEELISEMDGGG-LEID--EYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERA 517 (856)
Q Consensus 441 ~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 517 (856)
..+.++.-+.+++... ..|+ ...+...+..+...|+.++|...|++.....|.+..+|..++..+...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444555555554321 1111 233444555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 003020 518 FICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSH 558 (856)
Q Consensus 518 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 558 (856)
|+++.+..|.+..+|..++.++...|++++|++.|++..+.
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 55555555555555555555555556666666666555543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-07 Score=100.37 Aligned_cols=304 Identities=11% Similarity=0.010 Sum_probs=175.5
Q ss_pred chhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003020 495 SEGYSANIDGYGERGHVLEAERAFICCQEGKKLT---VLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLI 571 (856)
Q Consensus 495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 571 (856)
..++..++..+...|+.+++...+.......+.+ ..........+...|++++|...+++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 3344444444555555555544444443333222 2223333445566777778877777776652 223333332 1
Q ss_pred HHHH----cCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003020 572 QILA----GADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADV 647 (856)
Q Consensus 572 ~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 647 (856)
..+. ..+..+.+.+.+... ....+........+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 1222 234444444444431 11112223344556667888899999999999988865 33566778888888889
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHHcCCH
Q 003020 648 GNVKQAQSYFDAMESAGL-PPNA--VIYNSLIKLYTKVGYLKEAQETYKLLRSLEA-SPDVYTS-N--CMIDLYSERSMV 720 (856)
Q Consensus 648 g~~~~A~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~g~~ 720 (856)
|++++|..++++...... .|+. ..|..+...+...|++++|..+|++...... .+..... + .++..+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 999999999888876531 1222 3455778888889999999999988765322 1112111 1 223333344433
Q ss_pred HHHHHH---HHHHHhCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcC
Q 003020 721 RQAEEI---FEIMKKKG--DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI--------SDLLSYNNVLGLYAVDG 787 (856)
Q Consensus 721 ~~A~~~---~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------p~~~~~~~l~~~~~~~g 787 (856)
+.+.+. ........ +.........+.++...|+.++|.+.++.+....-. .........+.++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 333222 11111111 122233346777888899999999999888664221 01233455567788999
Q ss_pred CHHHHHHHHHHHHHc
Q 003020 788 RFKDVIGTFKDMVNA 802 (856)
Q Consensus 788 ~~~~A~~~~~~~~~~ 802 (856)
++++|.+.+...+..
T Consensus 322 ~~~~A~~~L~~al~~ 336 (355)
T cd05804 322 NYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988773
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.6e-07 Score=97.07 Aligned_cols=261 Identities=11% Similarity=0.001 Sum_probs=148.3
Q ss_pred HHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH----ccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcC
Q 003020 503 DGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYG----MGRNYDKACNLFDSMTSHGAVPD-KCSYNSLIQILAGA 577 (856)
Q Consensus 503 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~ 577 (856)
..+...|++++|...+++..+..|.+...+.. ...+. ..+..+.+.+.+... ....|+ ......+...+...
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHc
Confidence 34445555556666555555555555544442 22222 233444444444431 112232 33444555677778
Q ss_pred CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCHHHHH
Q 003020 578 DLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVE-PDV--VVYGVLINAFADVGNVKQAQ 654 (856)
Q Consensus 578 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~ 654 (856)
|++++|...+++..+.. +.+...+..+...+...|++++|...+++.+..... ++. ..|..+...+...|++++|.
T Consensus 128 G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 128 GQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 88888888888877764 334566777778888888888888888887765321 222 24556777788888888888
Q ss_pred HHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--H-HHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003020 655 SYFDAMESAGL-PPNAVIY-N--SLIKLYTKVGYLKEAQET--Y-KLLRSLEA-SPDVYTSNCMIDLYSERSMVRQAEEI 726 (856)
Q Consensus 655 ~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~ 726 (856)
.++++...... .+..... + .++.-+...|....+.++ . ........ ............++...|+.++|..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 88888754321 1222211 1 223333344433333332 1 11111100 11112222456677788899999999
Q ss_pred HHHHHhCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 727 FEIMKKKGDA---------NEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 727 ~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
++.+...... ..........++...|++++|.+.+.+++..
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9887664322 2233445566677899999999999988865
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-10 Score=81.00 Aligned_cols=50 Identities=40% Similarity=0.602 Sum_probs=43.7
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc
Q 003020 319 LSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGN 368 (856)
Q Consensus 319 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 368 (856)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57788999999999999999999999999988999999999999888864
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.5e-08 Score=92.55 Aligned_cols=288 Identities=12% Similarity=0.044 Sum_probs=136.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHH
Q 003020 467 LTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYD 546 (856)
Q Consensus 467 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 546 (856)
++..+.+..+++++++++...++..|.+......++.+|....++..|...|++.....|.-..--.--...+.+.+.+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccH
Confidence 33333444444444444444444444444444444444444444444444444444333322222222233444455555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH--HHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 547 KACNLFDSMTSHGAVPDKCSYNSLI--QILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKD 624 (856)
Q Consensus 547 ~A~~~~~~m~~~~~~p~~~~~~~ll--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (856)
+|+.+...|... |+...-..-+ ......+++-.+..++++.-.. .+..+.+.......+.|++++|++-|+.
T Consensus 96 DALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 96 DALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHH
Confidence 555555555432 1111110111 1122344444444444443321 1233333333444556666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCH---------------HHHHHHH
Q 003020 625 MIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLP-------------PNA---------------VIYNSLI 676 (856)
Q Consensus 625 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------------p~~---------------~~~~~l~ 676 (856)
..+.+--.....|+.-+ +..+.|+++.|+++..++++.|+. ||+ ..+|.-.
T Consensus 170 AlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 65543233344555443 233445666666666666554432 111 1122222
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHH
Q 003020 677 KLYTKVGYLKEAQETYKLLRS-LEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFE 755 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 755 (856)
..+.+.|+++.|.+.+..|-- .....|++|...+.-. -..+++.+..+-++-++...|....++..++..||+..-++
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFD 327 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHh
Confidence 233456777777766655532 2223455555444321 12344555556666666666777777777777777777777
Q ss_pred HHHHHHH
Q 003020 756 EATRIAK 762 (856)
Q Consensus 756 ~A~~~~~ 762 (856)
.|..++.
T Consensus 328 lAADvLA 334 (459)
T KOG4340|consen 328 LAADVLA 334 (459)
T ss_pred HHHHHHh
Confidence 7766554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-07 Score=87.49 Aligned_cols=416 Identities=13% Similarity=0.076 Sum_probs=211.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHH
Q 003020 324 YNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNIL-IFLHA 402 (856)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~ 402 (856)
+++.+..+.+..++++|++++....+...+ +....+.|..+|....++..|...++++... .|...-|... ...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 445555555666677777766666554321 5556666666666666666666666666543 3443333322 24445
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH--HHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHH
Q 003020 403 KNDKISMASRYFWKMKEANLEPDIVSYRTLLYA--YSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKS 480 (856)
Q Consensus 403 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 480 (856)
+.+.+.+|+++...|.+. |+...-..-+.+ ....+++..+..++++...
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~-------------------------- 140 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS-------------------------- 140 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC--------------------------
Confidence 556666666666555431 221111111111 1123333334333333321
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 003020 481 WLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLT-VLVFNVMVKAYGMGRNYDKACNLFDSMTSHG 559 (856)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 559 (856)
..+.++....+-...+.|+++.|.+-|..+.+-..-. ...||.- -+..+.|+++.|++...++.++|
T Consensus 141 -----------en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 141 -----------ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred -----------CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhh
Confidence 1223333444444555666666666666555443333 3444433 34446677888888888887776
Q ss_pred CCCCHHH----HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH
Q 003020 560 AVPDKCS----YNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFN-VEPDV 634 (856)
Q Consensus 560 ~~p~~~~----~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 634 (856)
++..+.. -.-.+++- .-|+. ..+.... =+..+|.-...+.+.|+++.|.+.+.+|-.+. ...|+
T Consensus 209 ~r~HPElgIGm~tegiDvr-svgNt---~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDP 277 (459)
T KOG4340|consen 209 IRQHPELGIGMTTEGIDVR-SVGNT---LVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDP 277 (459)
T ss_pred hhcCCccCccceeccCchh-cccch---HHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCc
Confidence 6422110 00000000 00000 0011000 01234555556778899999998888875322 23467
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHH
Q 003020 635 VVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEAS-PDVYTSNCMIDL 713 (856)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~ 713 (856)
+|...+.-.- ..+++.+...-+.-+...+ |-...||..++-.||+..-++-|-.++.+-...... .+...|+ ++++
T Consensus 278 vTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLda 354 (459)
T KOG4340|consen 278 VTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDA 354 (459)
T ss_pred hhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHH
Confidence 7776654222 2345666666666666654 345678999999999999999888886542221110 2233443 3333
Q ss_pred HH-HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003020 714 YS-ERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGR---FEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRF 789 (856)
Q Consensus 714 ~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 789 (856)
+. ..-..++|++-++.+...-..-......-+..-..+++ ...|++-|++.++. -.......++.|+...++
T Consensus 355 LIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy 430 (459)
T KOG4340|consen 355 LITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDY 430 (459)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhcccccc
Confidence 33 34456666655544432110000000000111111111 23445555555554 223445567888999999
Q ss_pred HHHHHHHHHHHH
Q 003020 790 KDVIGTFKDMVN 801 (856)
Q Consensus 790 ~~A~~~~~~~~~ 801 (856)
..+.+.|....+
T Consensus 431 ~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 431 PMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHh
Confidence 999999998887
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.1e-08 Score=102.72 Aligned_cols=245 Identities=12% Similarity=0.038 Sum_probs=172.6
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003020 574 LAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQA 653 (856)
Q Consensus 574 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 653 (856)
+.+.|++.+|.-.|+..+++. +-+...|.-|.......++-..|+..+++.++..+ -|......|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHHH
Confidence 345566666666666666654 33556677777777777777777777777777642 3666777777777777777778
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH-------HHHHhcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 654 QSYFDAMESAGLPPNAVIYNSLI-------KLYTKVGYLKEAQETYKLL-RSLEASPDVYTSNCMIDLYSERSMVRQAEE 725 (856)
Q Consensus 654 ~~~~~~~~~~~~~p~~~~~~~l~-------~~~~~~g~~~~A~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 725 (856)
+.+++.-+...+ |-...-..-. ..+.....+....++|-.+ ...+..+|......|+-.|--.|++++|+.
T Consensus 373 l~~L~~Wi~~~p-~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 373 LKMLDKWIRNKP-KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHhCc-cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 777777654321 1000000000 0111112233444445444 345545777778889989999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-
Q 003020 726 IFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAI- 804 (856)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~- 804 (856)
.|+.++...|.|...|+.|+..++...+.++|+..|++++++.|. -..++++|+-.|+..|.|+||.+.|=.++...-
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999876 668889999999999999999999988766210
Q ss_pred --------CCCHHHHHHHHHHHHHcC
Q 003020 805 --------QPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 805 --------~p~~~~~~~l~~~~~~~G 822 (856)
.++...|..|-.++...+
T Consensus 531 s~~~~~~~~~se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 531 SRNHNKAPMASENIWQTLRLALSAMN 556 (579)
T ss_pred ccccccCCcchHHHHHHHHHHHHHcC
Confidence 122346777777777777
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.8e-10 Score=79.86 Aligned_cols=49 Identities=35% Similarity=0.497 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 003020 389 PDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYS 437 (856)
Q Consensus 389 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 437 (856)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666777777777777777777777777777777777777777776665
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.6e-08 Score=103.34 Aligned_cols=232 Identities=14% Similarity=0.084 Sum_probs=145.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHH
Q 003020 468 TRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDK 547 (856)
Q Consensus 468 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 547 (856)
+.-+.+.|++.+|.-.|+.....+|...++|..++......++-..|+..+.++.+..|.+..+.-.|.-.|...|.-.+
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 44456778888888888888888899999999999999999999999999999999988889999999999999998889
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 003020 548 ACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMI- 626 (856)
Q Consensus 548 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 626 (856)
|+..++..+....+ |..+..+ ...++++.- +-.++.. .+....++|-++.
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~~~----------~s~~~~~-------------~l~~i~~~fLeaa~ 422 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSA-GENEDFENT----------KSFLDSS-------------HLAHIQELFLEAAR 422 (579)
T ss_pred HHHHHHHHHHhCcc-----chhcccc-CccccccCC----------cCCCCHH-------------HHHHHHHHHHHHHH
Confidence 99998888765322 0000000 000000000 0001111 1222233333333
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-H
Q 003020 627 RFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDV-Y 705 (856)
Q Consensus 627 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~ 705 (856)
..+..+|..+...|.-.|--.|.+++|...|+.++... |.|..+||-|+..+....+.++|++.|+++++ +.|.- .
T Consensus 423 ~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR 499 (579)
T KOG1125|consen 423 QLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVR 499 (579)
T ss_pred hCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeee
Confidence 22223555556666666666666666666666666553 44556666666666666666666666666666 33442 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMK 731 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 731 (856)
....|+-.|...|.+++|.+.|-+++
T Consensus 500 ~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 500 VRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred eehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 33344555666666666666665444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.1e-09 Score=104.14 Aligned_cols=252 Identities=11% Similarity=0.057 Sum_probs=143.5
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH
Q 003020 540 GMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAE 619 (856)
Q Consensus 540 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 619 (856)
.-.|++..++.-.+ ........+......+.+++...|+++.++. .+.+.. .|.......+...+...++-+.++
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34566666665444 1111111122334445566666666554332 222222 444444444444333333445555
Q ss_pred HHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003020 620 EVYKDMIRFNVEPDVVVY-GVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSL 698 (856)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 698 (856)
.-+++.......++..++ ......+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 555444332222222222 22233455678888888776542 35566667778888888888888888888774
Q ss_pred CCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 699 EASPDVYTSNCMIDLYS----ERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLL 774 (856)
Q Consensus 699 ~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 774 (856)
..|.... .+..++. -...+.+|..+|+++.+..++++.+++.++.++...|++++|.++++++++.++. ++.
T Consensus 161 --~eD~~l~-qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d 236 (290)
T PF04733_consen 161 --DEDSILT-QLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPD 236 (290)
T ss_dssp --SCCHHHH-HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHH
T ss_pred --CCcHHHH-HHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHH
Confidence 3444332 3333332 2336888888888887777778888888888888888888888888888887776 778
Q ss_pred HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCH
Q 003020 775 SYNNVLGLYAVDGRF-KDVIGTFKDMVNAAIQPDD 808 (856)
Q Consensus 775 ~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~ 808 (856)
+..+++.+....|+. +.+.+++.++... .|+.
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h 269 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNH 269 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTS
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCC
Confidence 888888888888887 5566677776663 4543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.3e-05 Score=78.45 Aligned_cols=149 Identities=12% Similarity=0.175 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHH
Q 003020 545 YDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVS-DCIPYCAVISSYMKLGQLEMAEEVYK 623 (856)
Q Consensus 545 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 623 (856)
.+.....+++++..-...-..+|-..++...+..-+..|..+|.++.+.+..+ ++.++++++..|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 34444444444443222223344455555555555555666666655554444 4445555555444 345555566655
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 624 DMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA--VIYNSLIKLYTKVGYLKEAQETYKLL 695 (856)
Q Consensus 624 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 695 (856)
--++. ...+..--...++.+...++-..|..+|++....+++|+. ..|..++..=..-|+...++++-+++
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 54443 1223333344555555555555566666665555444333 45555555555556655555555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.95 E-value=0.00015 Score=79.96 Aligned_cols=219 Identities=16% Similarity=0.128 Sum_probs=143.3
Q ss_pred cCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHH
Q 003020 171 QSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVC 250 (856)
Q Consensus 171 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 250 (856)
.+++..|++-.+...++.|..+-..++.++. +.|.|+.++|..+++..-..+.. |..|...+-.+|...|+.++|..
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 3577789999998888753333334444443 66899999999999887665555 88899999999999999999999
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHHhcCChhH----HHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHH
Q 003020 251 WLERMNEGGMEPDEVTMGIVVQMYKKAGEFQK----AEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNT 326 (856)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (856)
+|+++.+. .|.......+..+|.+-+++.+ |.++++..++ .+..+=+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk---------------------------~~yyfWs 149 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK---------------------------RAYYFWS 149 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---------------------------ccchHHH
Confidence 99999876 5567777778888888777654 5555654332 2333333
Q ss_pred HHHHHHhcC-C---------HHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHhcCCCHHHHHHHHH-HHHhCCCCCCHHHH
Q 003020 327 LIDTYGKAG-Q---------LKEASETFAQMLREG-IVPTTVTFNTMIHIYGNNDQLAEVDSLIK-KMEELHCPPDTRTY 394 (856)
Q Consensus 327 li~~~~~~g-~---------~~~A~~~~~~~~~~g-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~ 394 (856)
+++...+.- . ..-|...++.+.+.+ .--+..-...-...+..+|.+++|..++. ...+.-.+-+...-
T Consensus 150 V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~ 229 (932)
T KOG2053|consen 150 VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLE 229 (932)
T ss_pred HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHH
Confidence 344333321 1 123555566666543 11122222333345556788888888883 33333333344455
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcC
Q 003020 395 NILIFLHAKNDKISMASRYFWKMKEAN 421 (856)
Q Consensus 395 ~~li~~~~~~g~~~~A~~~~~~m~~~~ 421 (856)
+--+..+...+++.+-.++-.++..+|
T Consensus 230 ~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 230 NKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 566677788888888888888887765
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.4e-06 Score=101.67 Aligned_cols=269 Identities=14% Similarity=0.072 Sum_probs=164.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC---C--ChHhHHHH
Q 003020 535 MVKAYGMGRNYDKACNLFDSMTSHGAVPDK----CSYNSLIQILAGADLPHMAKRYLRKMQEAGLV---S--DCIPYCAV 605 (856)
Q Consensus 535 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~---~--~~~~~~~l 605 (856)
+...+...|++++|...+++....-...+. ...+.+...+...|+++.|...+.+.....-. + ...++..+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 334555677888888887776653111121 23445555666788888888877776543111 1 12234555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC--CHHHHHH
Q 003020 606 ISSYMKLGQLEMAEEVYKDMIRF----NVE--P-DVVVYGVLINAFADVGNVKQAQSYFDAMESA--GLPP--NAVIYNS 674 (856)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p--~~~~~~~ 674 (856)
...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 66677788888888887776542 111 1 1233445555666778888888888776542 1112 2334455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH----HHHHH
Q 003020 675 LIKLYTKVGYLKEAQETYKLLRSLEA-SPDVYTS-----NCMIDLYSERSMVRQAEEIFEIMKKKGDANEF----TYAMM 744 (856)
Q Consensus 675 l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~l 744 (856)
+...+...|++++|...++.+..... ......+ ...+..+...|+.+.|.+.+.......+.... .+..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 66677788888888888877754211 1111111 11223445578888888887765543222221 24567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003020 745 LIMYKRNGRFEEATRIAKQMRES----GLISD-LLSYNNVLGLYAVDGRFKDVIGTFKDMVNAA 803 (856)
Q Consensus 745 ~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 803 (856)
+.++...|++++|...++++... +..++ ..++..++.++.+.|+.++|...+.++++..
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77888888999998888888764 22111 2456777888889999999999998888753
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-06 Score=90.15 Aligned_cols=218 Identities=9% Similarity=-0.006 Sum_probs=155.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--HHH
Q 003020 577 ADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLG-QLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNV--KQA 653 (856)
Q Consensus 577 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A 653 (856)
.+..++|+....++++.. +-+..+|+....++...| ++++++..++++.+.++ .+..+|+.....+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhHHH
Confidence 445566666666666643 223334555555555666 57888888888887653 3666777666556666653 677
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CC----HHHHHHH
Q 003020 654 QSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSER---SM----VRQAEEI 726 (856)
Q Consensus 654 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~~ 726 (856)
+.+++++++.+ +-|..+|+....++...|+++++++.++++++.++ .+...|+....++... |. .++++++
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 88888888775 56788888888888888889999999988888654 3455566655555443 22 3567888
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---------------
Q 003020 727 FEIMKKKGDANEFTYAMMLIMYKRN----GRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDG--------------- 787 (856)
Q Consensus 727 ~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------------- 787 (856)
..+++...|.|..+|+.+..++... ++..+|.+.+.++...++. ++.....|+..|+...
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~ 284 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDTLAE 284 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence 8888888899999999999998873 4456798999888887776 7788889999988643
Q ss_pred ---CHHHHHHHHHHH
Q 003020 788 ---RFKDVIGTFKDM 799 (856)
Q Consensus 788 ---~~~~A~~~~~~~ 799 (856)
..++|.++++.+
T Consensus 285 ~~~~~~~a~~~~~~l 299 (320)
T PLN02789 285 ELSDSTLAQAVCSEL 299 (320)
T ss_pred ccccHHHHHHHHHHH
Confidence 235677777776
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2e-07 Score=88.77 Aligned_cols=127 Identities=7% Similarity=0.006 Sum_probs=95.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-HHcCC--HHHHH
Q 003020 682 VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY-KRNGR--FEEAT 758 (856)
Q Consensus 682 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~ 758 (856)
.++.++++..++...+.. +.+...|..++..|...|++++|...++++.+..|.+...+..++.++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 556677777777766644 256677778888888888888888888888888888888888888764 56666 48888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003020 759 RIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTF 811 (856)
Q Consensus 759 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 811 (856)
++++++++.+|. ++.++..++..+.+.|++++|+..|+++++. ..|+...+
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~ 181 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRT 181 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHH
Confidence 888888888877 7788888888888888888888888888775 24444333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-07 Score=100.42 Aligned_cols=221 Identities=17% Similarity=0.150 Sum_probs=176.7
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003020 561 VPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVL 640 (856)
Q Consensus 561 ~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 640 (856)
+|--..-..+...+.+.|-...|..+++++.. |..++.+|...|+..+|..+..+-++. +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 34344445566778888888888888887643 677788899999999999988888773 6788899888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 003020 641 INAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMV 720 (856)
Q Consensus 641 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 720 (856)
++......-+++|.++++..... .-..+.....+.++++++.+.|+...+... .-..+|-.+.-+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhh
Confidence 88887777788888888765432 112222233447899999999988777432 3456777788888889999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 721 RQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMV 800 (856)
Q Consensus 721 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 800 (856)
+.|.+.|.......|.+...|+++..+|.+.|+-.+|...++++++.+-. +...|.+.+......|.+++|++.++++.
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998844 77889888889999999999999999987
Q ss_pred H
Q 003020 801 N 801 (856)
Q Consensus 801 ~ 801 (856)
+
T Consensus 615 ~ 615 (777)
T KOG1128|consen 615 D 615 (777)
T ss_pred H
Confidence 7
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.9e-07 Score=90.63 Aligned_cols=207 Identities=14% Similarity=0.141 Sum_probs=167.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-
Q 003020 608 SYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVG-NVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYL- 685 (856)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~- 685 (856)
.+...++.++|+.+..++++.++ -+..+|+....++...| ++++++..++++.+.+ +.+..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 34456789999999999998753 35668887777777777 6799999999999875 56777888777777777763
Q ss_pred -HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc---CCH----HHH
Q 003020 686 -KEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN---GRF----EEA 757 (856)
Q Consensus 686 -~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A 757 (856)
++++.+++++++... -+...|+....++...|++++|++.++++++.++.|..+|+....++.+. |.. +++
T Consensus 124 ~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 124 ANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred hHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 678999999988553 45778888888999999999999999999999999999999999888765 323 578
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH
Q 003020 758 TRIAKQMRESGLISDLLSYNNVLGLYAVD----GRFKDVIGTFKDMVNAAIQPD-DFTFKSLGAVLMK 820 (856)
Q Consensus 758 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~ 820 (856)
+.+..++++..|. +...|+.+..++... ++..+|.+.+.+..+. .|+ ...+..|+..+..
T Consensus 203 l~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCCcHHHHHHHHHHHHh
Confidence 8888899999998 889999999999873 4567799999887774 444 4558888888875
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-07 Score=85.83 Aligned_cols=114 Identities=9% Similarity=-0.099 Sum_probs=84.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003020 690 ETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 690 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 769 (856)
..|++.++ ..|+. +..+...+...|++++|...|+.+....|.+..+|..++.++...|++++|+..|+++++.+|
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 44555555 22443 345666777788888888888888887788888888888888888888888888888888777
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 770 ISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFT 810 (856)
Q Consensus 770 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 810 (856)
. ++..+..++.++...|++++|+..|++.++. .|+...
T Consensus 90 ~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~ 127 (144)
T PRK15359 90 S-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADAS 127 (144)
T ss_pred C-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChH
Confidence 6 7788888888888888888888888887773 565443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.9e-06 Score=101.25 Aligned_cols=335 Identities=13% Similarity=0.021 Sum_probs=195.1
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---------CchhhHHHHHHHh
Q 003020 436 YSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDM---------SSEGYSANIDGYG 506 (856)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~ 506 (856)
....|+++.+...+..+.......++.........+...|+++++..+++.+...... ...........+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3345666665555554421111112223333444555667777777766655432110 0111222344556
Q ss_pred hcCCHHHHHHHHHHHhcCCCC-c----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHc
Q 003020 507 ERGHVLEAERAFICCQEGKKL-T----VLVFNVMVKAYGMGRNYDKACNLFDSMTSHGA---VP--DKCSYNSLIQILAG 576 (856)
Q Consensus 507 ~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p--~~~~~~~ll~~~~~ 576 (856)
..|++++|...++......+. + ....+.+...+...|++++|...+.+...... .+ ...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 777888888777776543221 1 23455666677788888888888887764311 11 12344556667778
Q ss_pred CCChHHHHHHHHHHHHc----CCC--C-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHH
Q 003020 577 ADLPHMAKRYLRKMQEA----GLV--S-DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFN--VEP--DVVVYGVLINAFA 645 (856)
Q Consensus 577 ~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~~~ 645 (856)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 88888888888776542 211 1 12234455566777789999988888776431 111 2334455666777
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCCCHH--HH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHH
Q 003020 646 DVGNVKQAQSYFDAMESA--GLPPNAV--IY--NSLIKLYTKVGYLKEAQETYKLLRSLEASPD---VYTSNCMIDLYSE 716 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~--~~~p~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~ 716 (856)
..|++++|...+++.... ....... .. ...+..+...|+.+.|..++........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 888999998888777442 1111111 00 1122344557888888888766543211111 1113456667788
Q ss_pred cCCHHHHHHHHHHHHhCC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 717 RSMVRQAEEIFEIMKKKG-----D-ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 717 ~g~~~~A~~~~~~~~~~~-----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.|++++|...++++.... + ....+...++.++...|+.++|...+.++++....
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 889999988888876543 1 12346667788888999999999999998876543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.9e-08 Score=96.33 Aligned_cols=250 Identities=14% Similarity=0.081 Sum_probs=163.7
Q ss_pred hcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 003020 507 ERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRY 586 (856)
Q Consensus 507 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~ 586 (856)
-.|.+..++.-.+...............+.+++...|+++.++. ++... -.|.......+...+...++.+.+..-
T Consensus 13 y~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 13 YLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp CTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred HhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHHHHH
Confidence 34555555543331111111234555666778888888775443 33332 256666665555555444555555555
Q ss_pred HHHHHHcCCC-CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003020 587 LRKMQEAGLV-SDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGL 665 (856)
Q Consensus 587 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 665 (856)
++........ .+.........++...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.+
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~- 161 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID- 161 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 5444333322 23333344445667789999999887653 366777778889999999999999999998753
Q ss_pred CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH
Q 003020 666 PPNAVIYNSLIKLYT----KVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTY 741 (856)
Q Consensus 666 ~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 741 (856)
.|. +...+..++. ..+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.++++++...+|.++.++
T Consensus 162 -eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 -EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp -CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred -CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 343 3444444443 234799999999998763 457888889999999999999999999999998889999999
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHcCCC
Q 003020 742 AMMLIMYKRNGRF-EEATRIAKQMRESGLI 770 (856)
Q Consensus 742 ~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~ 770 (856)
..++.+....|+. +.+.+.+.++....|.
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 9999999999988 6788899998887665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-06 Score=99.42 Aligned_cols=135 Identities=10% Similarity=0.049 Sum_probs=105.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHH
Q 003020 665 LPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAM 743 (856)
Q Consensus 665 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 743 (856)
++.++..+..|.....+.|.+++|..+++.+.+ +.|| ......++.++.+.+++++|+..+++.....|.+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 456677788888888888888888888888877 3455 3355567777888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 744 MLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 744 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
++.++.+.|++++|+.+|++++..+|. ++.++..++.++...|+.++|...|++.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888888876655 5778888888888888888888888888773
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.1e-07 Score=90.12 Aligned_cols=186 Identities=12% Similarity=-0.007 Sum_probs=120.0
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HH
Q 003020 597 SDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVE-PD-VVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA---VI 671 (856)
Q Consensus 597 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~ 671 (856)
.....+..++..+...|++++|...|+++....+. |. ..++..+..++...|++++|...++++.+.. |.+. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence 34555666777777778888888888877765321 11 1356667777777788888888888777653 2122 24
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHH
Q 003020 672 YNSLIKLYTKV--------GYLKEAQETYKLLRSLEASPDVY-TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYA 742 (856)
Q Consensus 672 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 742 (856)
+..++.++... |++++|.+.|+.+.+.. |+.. .+..+..... ..... .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~-------------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL-------------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH-------------HHHHH
Confidence 55555555544 56777777777776632 3321 1211111100 00000 01123
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 743 MMLIMYKRNGRFEEATRIAKQMRESGLI-S-DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 743 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
.++..+.+.|++++|+..++++++..|. | .+..+..++.++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5677889999999999999999988664 2 3578999999999999999999999888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.84 E-value=7e-07 Score=84.14 Aligned_cols=164 Identities=13% Similarity=0.092 Sum_probs=134.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003020 633 DVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMID 712 (856)
Q Consensus 633 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 712 (856)
|... ..+-..+...|+-+....+....... .+.+.......+....+.|++.+|+..+++..... ++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3334 55667777888888888887776544 25566677778888899999999999999888754 377888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003020 713 LYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDV 792 (856)
Q Consensus 713 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 792 (856)
+|.+.|+.++|..-|.++.+..+.++.+.++|+..+.-.|+++.|..++......++. |...-.++..+....|++++|
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHH
Confidence 9999999999999999999988999999999999999999999999999998887766 778888888888999999999
Q ss_pred HHHHHHHH
Q 003020 793 IGTFKDMV 800 (856)
Q Consensus 793 ~~~~~~~~ 800 (856)
..+...-+
T Consensus 222 ~~i~~~e~ 229 (257)
T COG5010 222 EDIAVQEL 229 (257)
T ss_pred Hhhccccc
Confidence 87765543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.7e-07 Score=82.21 Aligned_cols=125 Identities=8% Similarity=-0.100 Sum_probs=103.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 003020 655 SYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG 734 (856)
Q Consensus 655 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 734 (856)
.++++.+.. .|+ .+..++.++...|++++|...|+.+....+ .+...|..++.++...|++++|...|+++....
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 455666554 244 355677888899999999999999888543 467788889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003020 735 DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAV 785 (856)
Q Consensus 735 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 785 (856)
|.++.++..++.++...|++++|+..|+++++..|. ++..|...+.+...
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~~~~~ 138 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQNAQIM 138 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887 77888777766543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.00041 Score=72.10 Aligned_cols=186 Identities=15% Similarity=0.164 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 615 LEMAEEVYKDMIRFNVEPDVVVYGVLINAFADV---GNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQET 691 (856)
Q Consensus 615 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 691 (856)
.+++..++++....-...+..+|..+...--.. ++.+.....++++...-...-..+|...++.-.+..-++.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 456677777766432233444444443321111 13556667777776542222235677788888888889999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 692 YKLLRSLEASP-DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 692 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
|.++.+.+..+ ++..+++++.-+| .++.+-|.++|+-=++..+.++.--...+.-+...|+-.-|..+|++++..+..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 99999876666 6778888887666 578899999999988888888888888888888999999999999999988555
Q ss_pred CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 771 SD--LLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 771 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
|+ ...|..++..-..-|+...++++-+++..
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 44 37899999988899999999999888766
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.6e-06 Score=87.67 Aligned_cols=222 Identities=15% Similarity=0.149 Sum_probs=160.5
Q ss_pred CCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 003020 457 LEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMV 536 (856)
Q Consensus 457 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 536 (856)
.+|-...-..+...+.+.|-...|..+|+++. .|...+.+|...|+..+|..+..+..+ .++++..|..++
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 44555566777788888888888888888875 577778888888888888888777777 677888888888
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHH
Q 003020 537 KAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLE 616 (856)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 616 (856)
++.....-+++|.++++..... .-..+.....+.++++++.+.++...+.. +.-..+|-.+..+..+.+++.
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 8888777788888887764332 11222222334677777877777766654 335566777777777788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 617 MAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLR 696 (856)
Q Consensus 617 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 696 (856)
.|.+.|....... +-+...||.+-.+|.+.++-.+|...+.+..+-+ ..+...|...+-...+.|.+++|++.+.++.
T Consensus 537 ~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 537 AAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 8888888877642 2245588888888888888888888888887766 4455666666666777888888888887776
Q ss_pred h
Q 003020 697 S 697 (856)
Q Consensus 697 ~ 697 (856)
.
T Consensus 615 ~ 615 (777)
T KOG1128|consen 615 D 615 (777)
T ss_pred H
Confidence 5
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-05 Score=74.77 Aligned_cols=187 Identities=14% Similarity=0.157 Sum_probs=131.4
Q ss_pred CCHHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003020 613 GQLEMAEEVYKDMIR---FN-VEPDVV-VYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKE 687 (856)
Q Consensus 613 g~~~~A~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 687 (856)
.+.++.++++..++. .| ..++.. .|..++-+....|+.+.|..+++.+... +|-+...-..-...+...|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 356666666666653 22 344443 4555666667778888888888887765 34344444444445566788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 688 AQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 688 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
|+++|+..++.+ +.|.+++-.-+...-..|+.-+|++-+....+..+.|..+|.-+...|...|+++.|.-.+++++-.
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 888888887755 3455566655666666777778888888888888888888888888888888888888888888888
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHc
Q 003020 768 GLISDLLSYNNVLGLYAVDGR---FKDVIGTFKDMVNA 802 (856)
Q Consensus 768 ~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~ 802 (856)
.|. ++..+..++..+.-.|- .+-|.++|.+.++.
T Consensus 184 ~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 QPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred CCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 776 77777777777766653 45677788877763
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.9e-07 Score=81.23 Aligned_cols=120 Identities=12% Similarity=0.066 Sum_probs=96.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 691 TYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 691 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.|+.+.+... .+......++..+...|++++|.+.++.+...+|.++..|..++..+...|++++|..+++++++.+|.
T Consensus 5 ~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 5 TLKDLLGLDS-EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hHHHHHcCCh-hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4555555332 234455677778888999999999999998888889999999999999999999999999999988876
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 771 SDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSL 814 (856)
Q Consensus 771 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 814 (856)
++..+..++.+|...|++++|+..+++.++. .|+...+..+
T Consensus 84 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 84 -DPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHH
Confidence 7888899999999999999999999998884 5666554433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.4e-06 Score=81.43 Aligned_cols=151 Identities=12% Similarity=0.131 Sum_probs=120.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003020 606 ISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYL 685 (856)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 685 (856)
+-.|...|+++.+....+.+.. |. ..+...++.+++...+++..+.+ |.+...|..++..|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3457888888876555433321 11 01223667788888888888775 78889999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCC--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003020 686 KEAQETYKLLRSLEASPDVYTSNCMIDL-YSERSM--VRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAK 762 (856)
Q Consensus 686 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 762 (856)
++|...|++..+... .+...+..+..+ +...|+ .++|.++++++.+.+|.++.++..++..+...|++++|+..|+
T Consensus 90 ~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999988553 356677777776 467777 5999999999999999999999999999999999999999999
Q ss_pred HHHHcCCC
Q 003020 763 QMRESGLI 770 (856)
Q Consensus 763 ~~~~~~~~ 770 (856)
++++..+.
T Consensus 169 ~aL~l~~~ 176 (198)
T PRK10370 169 KVLDLNSP 176 (198)
T ss_pred HHHhhCCC
Confidence 99998765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.1e-06 Score=78.47 Aligned_cols=157 Identities=13% Similarity=0.037 Sum_probs=132.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003020 668 NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIM 747 (856)
Q Consensus 668 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 747 (856)
|... ..+-..+...|+-+.+..+....... ...|.......+....+.|++.+|+..+.++....|+|..+|+.++.+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 4444 66677788889888888887765432 234556666788899999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-HHHH
Q 003020 748 YKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG-LELT 826 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G-~~~~ 826 (856)
|.+.|++++|..-|.++++..+. ++...++++..|.-.|+.+.|..++......+ .-|...-..|..+....| +.+.
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHH
Confidence 99999999999999999999988 89999999999999999999999999998854 335566778888888999 4444
Q ss_pred Hh
Q 003020 827 RK 828 (856)
Q Consensus 827 ~~ 828 (856)
++
T Consensus 222 ~~ 223 (257)
T COG5010 222 ED 223 (257)
T ss_pred Hh
Confidence 43
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.5e-06 Score=93.13 Aligned_cols=149 Identities=11% Similarity=0.091 Sum_probs=67.7
Q ss_pred CCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003020 493 MSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQ 572 (856)
Q Consensus 493 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 572 (856)
.+..+|..++..+...+++++|.++.+...+..|.....|..++..+.+.++++++..+ .+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--------------- 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID--------------- 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh---------------
Confidence 34444455555555555555555555544444444444444444444444444443333 1111
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003020 573 ILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQ 652 (856)
Q Consensus 573 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 652 (856)
......++.....+...+.+. ..+...+..+..+|-+.|+.++|..+|+++++.. +.|+.+.|.+...|... +.++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 111112222222222222221 1222344555555555555555555555555554 23555555555555555 5555
Q ss_pred HHHHHHHHHH
Q 003020 653 AQSYFDAMES 662 (856)
Q Consensus 653 A~~~~~~~~~ 662 (856)
|.+++.+...
T Consensus 168 A~~m~~KAV~ 177 (906)
T PRK14720 168 AITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.0014 Score=72.47 Aligned_cols=94 Identities=21% Similarity=0.259 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 707 SNCMIDLYSERSMV---RQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783 (856)
Q Consensus 707 ~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 783 (856)
-+.|++.|.+.++. -+|+-+++.-....|.|..+-..+++.|+--|-+..|.++|+.+.-+.+..|...|. +...+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~ 517 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA 517 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence 34556666665553 356666666666667777777777777777777777777777666555554433332 23445
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 003020 784 AVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 784 ~~~g~~~~A~~~~~~~~~ 801 (856)
...|++..+...++....
T Consensus 518 ~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HhcccchhHHHHHHHHHH
Confidence 566777777666666555
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.7e-06 Score=84.87 Aligned_cols=188 Identities=13% Similarity=0.045 Sum_probs=137.4
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-C-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHH
Q 003020 562 PDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLV-S-DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDV--VVY 637 (856)
Q Consensus 562 p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~ 637 (856)
.....+..++..+...|+++.|...++++.+.... | ...++..+..++.+.|++++|...++++++..+.... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35667888888999999999999999999886422 1 1246788889999999999999999999986543222 245
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003020 638 GVLINAFADV--------GNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNC 709 (856)
Q Consensus 638 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 709 (856)
..+..++... |++++|.+.|+++.... |.+...+..+..... .... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~------~~--------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR------LA--------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH------HH--------HHHHH
Confidence 5566666654 78899999999998863 333333332222111 1110 00 01225
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003020 710 MIDLYSERSMVRQAEEIFEIMKKKGDA---NEFTYAMMLIMYKRNGRFEEATRIAKQMRESG 768 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 768 (856)
+...+...|++++|+..++++.+..|. .+..+..++.++...|++++|..+++.+....
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 667789999999999999999988644 45789999999999999999999998887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-05 Score=90.67 Aligned_cols=217 Identities=13% Similarity=0.097 Sum_probs=110.9
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCC-----cHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003020 482 LWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKL-----TVLVFNVMVKAYGMGRNYDKACNLFDSMT 556 (856)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 556 (856)
+-|+++...+|.++-.|...+....+.++.+.|+++++++.....+ -..+|.++++....-|.-+...++|+++.
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 3345555555666666666666666666666666666655543311 13455555555555555555556666555
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHH
Q 003020 557 SHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEP-DVV 635 (856)
Q Consensus 557 ~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~ 635 (856)
+. -..-..|..|...|.+.+++++|.++++.|.+.- .-...+|...+..+.++.+-++|..++.++++.-++. .+.
T Consensus 1525 qy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1525 QY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred Hh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 43 1112334555555555555555555555555442 2344455555555555555555555555555431110 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASP 702 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 702 (856)
...-.+..-.+.|+.+++..+|+..... .|--...|+..++.-.++|+.+.+..+|+++...++.|
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 2233333334455555555555555544 23344555555555555555555555555555544433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2e-05 Score=90.19 Aligned_cols=242 Identities=10% Similarity=0.039 Sum_probs=156.7
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 003020 516 RAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGL 595 (856)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 595 (856)
+-|++.....|.+...|-..+......++.++|.+++++.+.. +.+. ++.
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~R-----------------Eee------------ 1494 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFR-----------------EEE------------ 1494 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcc-----------------hhH------------
Confidence 3444444455555666666666666666666666666665543 1110 000
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003020 596 VSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSL 675 (856)
Q Consensus 596 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 675 (856)
--...|.++++.-..-|.-+...++|+++.+. -.....|..|...|.+.+++++|.++++.|.+. +......|...
T Consensus 1495 -EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y 1570 (1710)
T KOG1070|consen 1495 -EKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMY 1570 (1710)
T ss_pred -HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHH
Confidence 01123555555555566677778888888763 223446777888888888888888888888765 34566778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH
Q 003020 676 IKLYTKVGYLKEAQETYKLLRSLEAS-PDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRF 754 (856)
Q Consensus 676 ~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 754 (856)
+..+.++.+-+.|..+++++++.-++ -........+..-.+.|+.+.+..+|+..+...|.-...|+..++.-.++|+.
T Consensus 1571 ~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~ 1650 (1710)
T KOG1070|consen 1571 ADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDI 1650 (1710)
T ss_pred HHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCH
Confidence 88888888888888888877763211 12333444555566788888888888888887777778888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHH
Q 003020 755 EEATRIAKQMRESGLISDL--LSYNNVLGLYAVDGRFKD 791 (856)
Q Consensus 755 ~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 791 (856)
+.+..+|++++++++.|-- ..|.-.+..--..|+-+.
T Consensus 1651 ~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1651 KYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred HHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 8888888888888776533 233444433334455433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.8e-05 Score=89.43 Aligned_cols=133 Identities=11% Similarity=0.087 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003020 633 DVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMID 712 (856)
Q Consensus 633 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 712 (856)
+...+..|.....+.|.+++|..+++...+.. |.+......++..+.+.+++++|+..+++...... .+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHHH
Confidence 34444444445555555555555555554432 22334444444445555555555555554444221 12223334444
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 713 LYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 713 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
++.+.|++++|.++|+++...+|.++.++..++.++...|+.++|...|+++++.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555555555555555444444455555555555555555555555555443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.4e-05 Score=70.90 Aligned_cols=173 Identities=14% Similarity=0.134 Sum_probs=128.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003020 602 YCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTK 681 (856)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 681 (856)
|..++-+....|+.+-|...++.+...- +-+..+-..-.-.+-..|++++|+++++.+++.+ |.|.+++---+...-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 4444555566778888888888877652 2222222222223556788899999999988876 6777788777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC---CHHHHH
Q 003020 682 VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG---RFEEAT 758 (856)
Q Consensus 682 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~ 758 (856)
+|+.-+|++-+....+. +..|...|.-+...|...|++++|.--++++.-..|.++..+..++..+...| +.+-|.
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88888888888777764 34788889999999999999999999999999888999988888888877665 577889
Q ss_pred HHHHHHHHcCCCCCHHHHHH
Q 003020 759 RIAKQMRESGLISDLLSYNN 778 (856)
Q Consensus 759 ~~~~~~~~~~~~p~~~~~~~ 778 (856)
++|.+.++..+. +...+..
T Consensus 212 kyy~~alkl~~~-~~ral~G 230 (289)
T KOG3060|consen 212 KYYERALKLNPK-NLRALFG 230 (289)
T ss_pred HHHHHHHHhChH-hHHHHHH
Confidence 999999998764 5444433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.7e-05 Score=80.04 Aligned_cols=148 Identities=16% Similarity=0.123 Sum_probs=118.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHH
Q 003020 643 AFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD-VYTSNCMIDLYSERSMVR 721 (856)
Q Consensus 643 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 721 (856)
.+...|++++|+..++.+++. .|.|+..+....+.+...++.++|.+.++++.... |+ ....-.+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChH
Confidence 455678899999999998876 36677777788888999999999999999988843 55 556667888899999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 722 QAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 722 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+|+.+++......|.|+..|..|+.+|...|+..+|...+ +..|...|+|++|+..+....+
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999888999999999999999999887776544 3456778999999999988877
Q ss_pred cCCCCCHHHHH
Q 003020 802 AAIQPDDFTFK 812 (856)
Q Consensus 802 ~g~~p~~~~~~ 812 (856)
. ++++..+|.
T Consensus 454 ~-~~~~~~~~a 463 (484)
T COG4783 454 Q-VKLGFPDWA 463 (484)
T ss_pred h-ccCCcHHHH
Confidence 5 355555543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.9e-05 Score=73.22 Aligned_cols=244 Identities=12% Similarity=0.083 Sum_probs=150.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH-H
Q 003020 542 GRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAE-E 620 (856)
Q Consensus 542 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~ 620 (856)
.|.+..++..-....... .+...-.-+.++|...|++.....- +.... .|.......+......-++.+.-+ +
T Consensus 21 ~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred hhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchhHHHHHH
Confidence 455665555444433221 2333334455566666655433221 11111 233333333333333334433333 3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003020 621 VYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEA 700 (856)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 700 (856)
+.+.+.......+......-...|++.|++++|+...+... +......=+..+.+..+.+-|.+.+++|.+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 34444433333333333334456888899999998877621 2233333345566778888899999888873
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003020 701 SPDVYTSNCMIDLYSE----RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSY 776 (856)
Q Consensus 701 ~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 776 (856)
.+..+.+.|..++.+ .+.+.+|.-+|+++.++.+|++.+.+.++.++...|++++|..+++.++...++ ++.+.
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL 244 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETL 244 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHH
Confidence 344566666666643 457889999999999888999999999999999999999999999999999887 88888
Q ss_pred HHHHHHHHhcCCHHHHH-HHHHHHHH
Q 003020 777 NNVLGLYAVDGRFKDVI-GTFKDMVN 801 (856)
Q Consensus 777 ~~l~~~~~~~g~~~~A~-~~~~~~~~ 801 (856)
.+++.+-...|+..++. +...++..
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 88887777778775543 44444444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0019 Score=65.91 Aligned_cols=263 Identities=13% Similarity=0.086 Sum_probs=146.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHcCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHH--
Q 003020 165 SIILKEQSSWERALEIFEWFKRQECHELN----VIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDV-- 238 (856)
Q Consensus 165 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-- 238 (856)
+.++..++++.+|..+|.++-+.....|. ....+.++++|.. .+.+.....+....+.. | ...|..+..+
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~ 88 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALV 88 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHH
Confidence 56788899999999999987654311221 3446678888875 44666666666555532 2 3455555554
Q ss_pred HHcCCCHHHHHHHHHHHHhC--CCC------------ccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhh
Q 003020 239 CSKGGLKEEAVCWLERMNEG--GME------------PDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKT 304 (856)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~~--~~~------------~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 304 (856)
+.+.+.+.+|++.+..-... +.. +|-..-+..++.+...|++.+++.+++++..+
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~----------- 157 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER----------- 157 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-----------
Confidence 56889999999998877654 222 12333456677888999999999999988532
Q ss_pred hhhhhccCCcCCCCcCHhHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHC------CCCCCHHhHHHHH
Q 003020 305 MIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQ---------------LKEASETFAQMLRE------GIVPTTVTFNTMI 363 (856)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------------~~~A~~~~~~~~~~------g~~p~~~~~~~ll 363 (856)
...+....++.+||.++-.+.+.=- ++.+.-...+|... .+.|.......++
T Consensus 158 -------llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~im 230 (549)
T PF07079_consen 158 -------LLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIM 230 (549)
T ss_pred -------HhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHH
Confidence 1133344677888886655544311 11122222222211 1223333333333
Q ss_pred HHHhcC-----CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcCCC----CCHHhHHHHH
Q 003020 364 HIYGNN-----DQLAEVDSLIKKMEELHCPPDT-RTYNILIFLHAKNDKISMASRYFWKMKEANLE----PDIVSYRTLL 433 (856)
Q Consensus 364 ~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~ll 433 (856)
....-. .-+-.+.+.++. .-+.|+. .+...++..+.+ +.+++..+-+.+....+. .-..++..++
T Consensus 231 qhlfi~p~e~l~~~mq~l~~We~---~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~L 305 (549)
T PF07079_consen 231 QHLFIVPKERLPPLMQILENWEN---FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLL 305 (549)
T ss_pred HHHHhCCHhhccHHHHHHHHHHh---hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 332211 111123333322 2233433 233444444444 444444444433322111 1245677788
Q ss_pred HHHHhcCCHHHHHHHHHHHhc
Q 003020 434 YAYSIRRMVCEAEELISEMDG 454 (856)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~ 454 (856)
....+.++..+|.+.+.-+.-
T Consensus 306 s~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 306 SFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHh
Confidence 888888888888888776654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.7e-05 Score=86.87 Aligned_cols=236 Identities=10% Similarity=0.023 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcc
Q 003020 463 TQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMG 542 (856)
Q Consensus 463 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 542 (856)
.+..++..+...+++++|..+.+......|.....|..++..+.+.++..++..+ .+++.....
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l~~~~~~ 96 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL----------------NLIDSFSQN 96 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh----------------hhhhhcccc
Confidence 4444555555555555555555544445555555555555555555554333222 333444444
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 003020 543 RNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVY 622 (856)
Q Consensus 543 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 622 (856)
.++.-...++..|.+. .-+...+..+..+|-+.|+.+++..+++++++.. +-|+.+.|.+...|... ++++|.+++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 5554444444455543 2344466667777777777777777777777765 44666677777777777 777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 003020 623 KDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASP 702 (856)
Q Consensus 623 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 702 (856)
.+++.. +...+++..+.++|.++.... +.+...+..+.+..... .+..-
T Consensus 173 ~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~---------------~~~~~ 221 (906)
T PRK14720 173 KKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGH---------------REFTR 221 (906)
T ss_pred HHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhh---------------hccch
Confidence 776542 455556677777777776653 22333332222222111 11111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003020 703 DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYK 749 (856)
Q Consensus 703 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 749 (856)
-+.++-.+...|...++++++..+++.+++..+.|..+..-++.+|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 22234444455666666677777777777666666666666666665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00016 Score=68.31 Aligned_cols=155 Identities=15% Similarity=0.125 Sum_probs=88.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 003020 606 ISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTK---- 681 (856)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---- 681 (856)
...|+..|++++|++...... ..+....+ ...+.+..+.+-|...+++|.+.+ +..|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 344556666666666555421 11222222 223445556666666666666532 44555555555543
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHH-HHHH
Q 003020 682 VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEE-ATRI 760 (856)
Q Consensus 682 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~ 760 (856)
.+++.+|.-+|++|.+. ..|+..+.+-...++...|++++|..+++.++.+.+.++.++..++.+-...|...+ -.+.
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 24566666666666552 336666666666666667777777777777777666666666666666666665433 3455
Q ss_pred HHHHHHcCCC
Q 003020 761 AKQMRESGLI 770 (856)
Q Consensus 761 ~~~~~~~~~~ 770 (856)
..++....|+
T Consensus 265 l~QLk~~~p~ 274 (299)
T KOG3081|consen 265 LSQLKLSHPE 274 (299)
T ss_pred HHHHHhcCCc
Confidence 5566555544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.45 E-value=9e-06 Score=72.98 Aligned_cols=113 Identities=11% Similarity=-0.018 Sum_probs=89.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003020 656 YFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD 735 (856)
Q Consensus 656 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 735 (856)
.++++.... +.+......++..+...|++++|.+.|+.+...+. .+...+..+...+...|++++|...++.+....|
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455555543 33445666777788888889999888888877542 4566777888888888999999999998888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 736 ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 736 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.++..+..++.++...|++++|.+.++++++..|.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 88888888999999999999999999999888765
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.3e-06 Score=73.02 Aligned_cols=96 Identities=10% Similarity=-0.052 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAV 785 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 785 (856)
..-.+...+...|++++|..+|+.+...+|.+...|..|+.++...|++++|+..|.++...+|. |+..+.+++.++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 33455666778999999999999999999999999999999999999999999999999999987 99999999999999
Q ss_pred cCCHHHHHHHHHHHHHc
Q 003020 786 DGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 786 ~g~~~~A~~~~~~~~~~ 802 (856)
.|+.+.|.+.|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999998884
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.4e-06 Score=82.18 Aligned_cols=112 Identities=16% Similarity=0.009 Sum_probs=69.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHH
Q 003020 676 IKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFE 755 (856)
Q Consensus 676 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 755 (856)
+.-..+.++|.+|+..|..+++... -|.+-|..-..+|.+.|.++.|++-.+..+..+|....+|..|+.+|...|+++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 4445566667777777766666431 344555556666677777777777777776666666667777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003020 756 EATRIAKQMRESGLISDLLSYNNVLGLYAVDGRF 789 (856)
Q Consensus 756 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 789 (856)
+|++.|+++++.+|. +.....+|-.+--+.+..
T Consensus 167 ~A~~aykKaLeldP~-Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 167 EAIEAYKKALELDPD-NESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHHHHhhhccCCC-cHHHHHHHHHHHHHhcCC
Confidence 777777777766655 444445554444444433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.9e-05 Score=77.67 Aligned_cols=186 Identities=15% Similarity=0.055 Sum_probs=135.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003020 632 PDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMI 711 (856)
Q Consensus 632 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 711 (856)
|+...+...+.+......-..+..++.+..+ +-.........-.+...|.+++|+..++.++... +.++..+....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4555555555554433333333333333222 1122223333334557899999999999988743 35567777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003020 712 DLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKD 791 (856)
Q Consensus 712 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 791 (856)
+.+...++.++|.+.++++....|.....+..++.+|.+.|++.+|++++++.....|. |+..|..|+.+|..+|+..+
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 348 DILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHH
Confidence 89999999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcC
Q 003020 792 VIGTFKDMVNAAIQPDDF-TFKSLGAVLMKCG 822 (856)
Q Consensus 792 A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~G 822 (856)
|...+.++....-.++.. .+-....-..+.|
T Consensus 427 a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~ 458 (484)
T COG4783 427 ALLARAEGYALAGRLEQAIIFLMRASQQVKLG 458 (484)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhccCC
Confidence 999998887743233332 2333333344444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.2e-05 Score=76.56 Aligned_cols=90 Identities=12% Similarity=-0.041 Sum_probs=56.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHH
Q 003020 679 YTKVGYLKEAQETYKLLRSLE---ASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFE 755 (856)
Q Consensus 679 ~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 755 (856)
..+.|.+..|.+.|.+.+... ..|+...|.....+..+.|+.++|+.-.+++...++.-...+..-+.++...++|+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777666532 22344455555556666777777777777777665555555555566666667777
Q ss_pred HHHHHHHHHHHcC
Q 003020 756 EATRIAKQMRESG 768 (856)
Q Consensus 756 ~A~~~~~~~~~~~ 768 (856)
+|.+-++++.+..
T Consensus 339 ~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 339 EAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHhhc
Confidence 7777777776654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-05 Score=83.50 Aligned_cols=125 Identities=17% Similarity=0.199 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR 750 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 750 (856)
....++..+...++++.|+++|+++.+.. |+.. ..++..+...++-.+|++++++.++..|.+...+..-+..|..
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 34455566666777788888887777643 4433 3466667677777788888888887777777777777777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 751 NGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMV 800 (856)
Q Consensus 751 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 800 (856)
.++++.|+++.+++.+..|. +..+|..|+.+|.+.|++++|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888888887776 77788888888888888888877776553
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.1e-07 Score=56.76 Aligned_cols=31 Identities=39% Similarity=0.504 Sum_probs=13.8
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 003020 387 CPPDTRTYNILIFLHAKNDKISMASRYFWKM 417 (856)
Q Consensus 387 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (856)
+.||..+||+||++|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.4e-07 Score=56.21 Aligned_cols=32 Identities=41% Similarity=0.494 Sum_probs=14.2
Q ss_pred CCCcChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 003020 224 GIVPINSTYGTLIDVCSKGGLKEEAVCWLERM 255 (856)
Q Consensus 224 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 255 (856)
|+.||..||++++.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.6e-05 Score=76.73 Aligned_cols=131 Identities=17% Similarity=0.122 Sum_probs=102.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC
Q 003020 641 INAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD-VYTSNCMIDLYSERSM 719 (856)
Q Consensus 641 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 719 (856)
..-+.+.+++++|+..|.+.++.. |.|.+-|..-..+|++.|.++.|++-.+..+.. .|. ..+|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCc
Confidence 455677889999999999999875 677888888899999999999999998888874 354 5589999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHH
Q 003020 720 VRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFE---EATRIAKQMRESGLISDLL 774 (856)
Q Consensus 720 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~ 774 (856)
+++|++.|++.++..|.|...+..|-.+-.+.+... .+..-++-....|..|+..
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~ 222 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSR 222 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccch
Confidence 999999999999999999877777776666665554 4444455455555445543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00024 Score=71.39 Aligned_cols=174 Identities=14% Similarity=0.046 Sum_probs=114.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-------------HHHHH
Q 003020 645 ADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYT-------------SNCMI 711 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-------------~~~l~ 711 (856)
.-.|++++|.+.--.+++.+ +.+......-..++--.++.+.|...|++.+..+ |+... +..-+
T Consensus 180 ~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhh
Confidence 34555566655555554443 2233332222333334455556666665555432 33221 11112
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003020 712 DLYSERSMVRQAEEIFEIMKKKGDA----NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDG 787 (856)
Q Consensus 712 ~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 787 (856)
.-..+.|++..|.+.|.+.+...|. +...|...+.+..+.|+.++|+.--+.++++++. -...|..-+.++...+
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le 335 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALE 335 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHH
Confidence 3345789999999999999998864 4556888888999999999999999999998654 4466777788899999
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcC
Q 003020 788 RFKDVIGTFKDMVNAAIQPD-DFTFKSLGAVLMKCG 822 (856)
Q Consensus 788 ~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~G 822 (856)
+|++|++-|++..+..-.+. ..++.....+|.++-
T Consensus 336 ~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSK 371 (486)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhh
Confidence 99999999999988543333 345666666666544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.6e-05 Score=82.10 Aligned_cols=97 Identities=13% Similarity=0.009 Sum_probs=70.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003020 711 IDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFK 790 (856)
Q Consensus 711 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 790 (856)
+..+...|++++|++.|+++++..|.+...|..++.+|...|++++|+..++++++..|. ++..|..++.+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 344556677777777777777777777777777777777777777777777777777765 6677777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHH
Q 003020 791 DVIGTFKDMVNAAIQPDDFT 810 (856)
Q Consensus 791 ~A~~~~~~~~~~g~~p~~~~ 810 (856)
+|+..|+++++ +.|+...
T Consensus 88 eA~~~~~~al~--l~P~~~~ 105 (356)
T PLN03088 88 TAKAALEKGAS--LAPGDSR 105 (356)
T ss_pred HHHHHHHHHHH--hCCCCHH
Confidence 77777777776 3555444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.4e-05 Score=68.10 Aligned_cols=126 Identities=12% Similarity=0.182 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSLEASP--DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN---EFTYAMML 745 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~ 745 (856)
.|..++..+ ..++...+...++.+.+..... .....-.+...+...|++++|...|+.+....+.+ ..+...|+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 3667777777777776632211 12233345566777788888888888877765332 23555677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 746 IMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDM 799 (856)
Q Consensus 746 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 799 (856)
.++...|++++|+..++..... ...+..+...+.+|.+.|++++|...|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7788888888888887663221 224456677788888888888888888764
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.5e-05 Score=64.91 Aligned_cols=94 Identities=18% Similarity=0.206 Sum_probs=75.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003020 707 SNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVD 786 (856)
Q Consensus 707 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 786 (856)
+..++..+...|++++|...++++.+..|.+..++..++.++...|++++|.+.++++.+..+. +..++..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 4456667777888888888888888777777777888888888888888888888888887766 557788888888888
Q ss_pred CCHHHHHHHHHHHHH
Q 003020 787 GRFKDVIGTFKDMVN 801 (856)
Q Consensus 787 g~~~~A~~~~~~~~~ 801 (856)
|++++|...+++.++
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 888888888887765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.8e-05 Score=64.72 Aligned_cols=96 Identities=11% Similarity=-0.019 Sum_probs=63.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 003020 707 SNCMIDLYSERSMVRQAEEIFEIMKKKGDAN---EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS--DLLSYNNVLG 781 (856)
Q Consensus 707 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~ 781 (856)
+..++..+.+.|++++|.+.++.+.+..|.+ ..++..++.++...|++++|.+.++++....|.. .+.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3455556666777777777777776655443 3456667777777777777777777777665442 2456667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 003020 782 LYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 782 ~~~~~g~~~~A~~~~~~~~~~ 802 (856)
++.+.|++++|...++++++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 777777777777777777664
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.1e-06 Score=67.05 Aligned_cols=81 Identities=12% Similarity=0.134 Sum_probs=61.8
Q ss_pred cCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003020 717 RSMVRQAEEIFEIMKKKGDA--NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIG 794 (856)
Q Consensus 717 ~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 794 (856)
.|+++.|+.+++++.+..|. +...+..++.+|.+.|++++|+.++++ .+.++. ++.....++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 57888899999888887764 455666788899999999999999888 555444 45666677888999999999998
Q ss_pred HHHHH
Q 003020 795 TFKDM 799 (856)
Q Consensus 795 ~~~~~ 799 (856)
++++.
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 88763
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00017 Score=65.23 Aligned_cols=126 Identities=13% Similarity=0.208 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHH
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESAGLPPN---AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDV--YTSNCM 710 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l 710 (856)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......|.. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 334444444 4677788888888887753 333 233344557777888888888888888875532321 234456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003020 711 IDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQM 764 (856)
Q Consensus 711 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 764 (856)
..++...|++++|+..++... ..+..+..+..++.+|...|++++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777888888888888886643 23455667778888888899999998888875
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00013 Score=71.11 Aligned_cols=100 Identities=7% Similarity=-0.018 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003020 702 PDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG---RFEEATRIAKQMRESGLISDLLSYNN 778 (856)
Q Consensus 702 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~ 778 (856)
.|...|-.|...|...|+++.|...|.++.+..|+|+..+..++.++..+. ...++..++++++..++. |+.+...
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 577888888889999999999999999988888888888888888876554 467888889999988887 8888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 779 VLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 779 l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
|+..++.+|++.+|...|+.|++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 888899999999999999998885
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0002 Score=62.49 Aligned_cols=105 Identities=13% Similarity=0.048 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEAS-P-DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN---EFTYAMM 744 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l 744 (856)
.++..++..+...|++++|.+.|+.+.+.... + ....+..++.++...|++++|...++.+....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34566677777888888888888877763321 1 13455567778888888888888888887765443 5567788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 745 LIMYKRNGRFEEATRIAKQMRESGLISDLLS 775 (856)
Q Consensus 745 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 775 (856)
+.++...|++++|.+.++++++..|. +..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPG-SSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcC-ChhH
Confidence 88888888888888888888888765 4433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00019 Score=75.71 Aligned_cols=105 Identities=8% Similarity=-0.147 Sum_probs=84.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHH
Q 003020 676 IKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFE 755 (856)
Q Consensus 676 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 755 (856)
+..+...|++++|++.|+++++... .+...|..+..+|...|++++|+..+++++...|.+...|..++.+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 4556678888899988888887543 356677788888888899999999999998888888888989999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003020 756 EATRIAKQMRESGLISDLLSYNNVLGL 782 (856)
Q Consensus 756 ~A~~~~~~~~~~~~~p~~~~~~~l~~~ 782 (856)
+|+..|+++++.+|. ++.....+..+
T Consensus 88 eA~~~~~~al~l~P~-~~~~~~~l~~~ 113 (356)
T PLN03088 88 TAKAALEKGASLAPG-DSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 999999999988877 66665555444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00022 Score=63.05 Aligned_cols=98 Identities=9% Similarity=-0.109 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYK 749 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 749 (856)
...-.+...+...|++++|..+|+.+....+ -+..-|..|.-++...|++++|+..|..+....|.|+..+..++.++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4455666677789999999999998887442 345566788888889999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcC
Q 003020 750 RNGRFEEATRIAKQMRESG 768 (856)
Q Consensus 750 ~~g~~~~A~~~~~~~~~~~ 768 (856)
..|+.+.|.+.|+.++...
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999888763
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.1e-05 Score=59.69 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 003020 737 NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDG-RFKDVIGTFKDMVN 801 (856)
Q Consensus 737 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 801 (856)
++.+|..++..+...|++++|+..|+++++.+|. ++..|..++.+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4567777778888888888888888888887776 7777888888888887 67888888877766
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00035 Score=65.47 Aligned_cols=83 Identities=19% Similarity=0.218 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD--VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY 748 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 748 (856)
.+..++..+...|++++|...|++..+....+. ...+..++.++...|++++|...++++.+..|.+...+..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344444555555555555555555544221111 233444444445555555555555555544444444444444444
Q ss_pred HHcCC
Q 003020 749 KRNGR 753 (856)
Q Consensus 749 ~~~g~ 753 (856)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00015 Score=59.99 Aligned_cols=97 Identities=23% Similarity=0.225 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 003020 672 YNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN 751 (856)
Q Consensus 672 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 751 (856)
+..++..+...|++++|...++.+.+... .+...+..+..++...+++++|.+.++......|.+..++..++..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45566677777888888888887776432 23355666777777888888888888888877777777888888888888
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 003020 752 GRFEEATRIAKQMRESGL 769 (856)
Q Consensus 752 g~~~~A~~~~~~~~~~~~ 769 (856)
|++++|...++++.+..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 888888888888776543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00017 Score=67.27 Aligned_cols=97 Identities=11% Similarity=-0.025 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA---NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVL 780 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 780 (856)
...|..++..+...|++++|+..++++....+. .+.++..++.++...|++++|+..++++++..+. ...++..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 344556666677777788888877777665432 2346777888888888888888888888877655 456666666
Q ss_pred HHHH-------hcCCHHHHHHHHHHHHH
Q 003020 781 GLYA-------VDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 781 ~~~~-------~~g~~~~A~~~~~~~~~ 801 (856)
.++. ..|++++|+..+++.+.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence 6666 77777766666555433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00036 Score=65.40 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESAGLPPN--AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDL 713 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 713 (856)
.+..+...+...|++++|...|++..+....+. ...+..++.++.+.|++++|+..++++.+... .+...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 445555555556666666666666554321111 24555555566666666666666665555321 123344444555
Q ss_pred HHHcCCHHHHHH
Q 003020 714 YSERSMVRQAEE 725 (856)
Q Consensus 714 ~~~~g~~~~A~~ 725 (856)
+...|+...+..
T Consensus 116 ~~~~g~~~~a~~ 127 (172)
T PRK02603 116 YHKRGEKAEEAG 127 (172)
T ss_pred HHHcCChHhHhh
Confidence 555555444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00033 Score=70.12 Aligned_cols=155 Identities=18% Similarity=0.128 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH----HHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CCHH
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAM----ESAGL-PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS----LEAS-PDVY 705 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~ 705 (856)
.|..+...|.-.|+++.|+..-+.- .+.|- ......+..+.+++.-.|.++.|.+.|+.... .|-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555555666677666554322 12221 11234566777777777777777777765432 2211 1223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CCHH
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKG------DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI-----SDLL 774 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~ 774 (856)
+...|...|.-..++++|+.++.+-+... .....++.+|+.++...|..++|+.+.++-++...+ -...
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 44466677777777777777776543221 334557777888888888888887777666543211 1123
Q ss_pred HHHHHHHHHHhcCCHH
Q 003020 775 SYNNVLGLYAVDGRFK 790 (856)
Q Consensus 775 ~~~~l~~~~~~~g~~~ 790 (856)
.-.++...-...|..+
T Consensus 357 ar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 357 ARDNLSDLILELGQED 372 (639)
T ss_pred hhhhhHHHHHHhCCCc
Confidence 3445555555555543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.4e-05 Score=57.96 Aligned_cols=57 Identities=11% Similarity=0.202 Sum_probs=36.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 744 MLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 744 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
++..+...|++++|++.|+++++..|. ++..+..++.++...|++++|+.+|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666666666666666655 666666666666666666666666666665
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0002 Score=74.88 Aligned_cols=116 Identities=12% Similarity=0.017 Sum_probs=67.4
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHH
Q 003020 438 IRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERA 517 (856)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 517 (856)
..++++.|+.+|+++.+.. |+ ....++..+...++..+|.+++.+.....|.+.+....-+..+.+.++++.|+.+
T Consensus 181 ~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred hcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3444444444444444332 12 2222344444444444555555555544455555555556666666777777777
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 003020 518 FICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTS 557 (856)
Q Consensus 518 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 557 (856)
.+++....|.+..+|..|..+|...|+++.|+..++.+.-
T Consensus 257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 257 AKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7777777677777777777777777777777777776653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00024 Score=66.36 Aligned_cols=95 Identities=18% Similarity=0.070 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASP--DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLI 746 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 746 (856)
...|..++..+...|++++|+..|++.......+ ...++..+..++...|++++|+..++++....|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4556666777777788888888887776643222 23467777778888888888888888888777777777777777
Q ss_pred HHH-------HcCCHHHHHHHHHH
Q 003020 747 MYK-------RNGRFEEATRIAKQ 763 (856)
Q Consensus 747 ~~~-------~~g~~~~A~~~~~~ 763 (856)
++. ..|++++|+..+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 776 66676644444443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.8e-05 Score=57.31 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=54.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 710 MIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
++..+...|++++|++.|+.+++..|.++.++..++.++...|++++|+..|+++++..|.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4567889999999999999999999999999999999999999999999999999988765
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0015 Score=61.72 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=80.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHHcC
Q 003020 679 YTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG------DANEFTYAMMLIMYKRNG 752 (856)
Q Consensus 679 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g 752 (856)
+...|.+.-....+.++++...+.++.....|++.-.+.|+.+.|...|++..+.. ..+..+.......|.-++
T Consensus 187 llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~n 266 (366)
T KOG2796|consen 187 LLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQN 266 (366)
T ss_pred HhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheeccc
Confidence 33334444444444444443333334444444444444444444444444332211 122223333444555566
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCHHHHHhhcc
Q 003020 753 RFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVL-MKCGLELTRKKNA 831 (856)
Q Consensus 753 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~G~~~~~~~~~ 831 (856)
++..|...+.++.+.++. ++..-|+-+-++.-.|+..+|++..+.|++ ..|...+-++++--+ .-..+++.+.+..
T Consensus 267 n~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~~nL~tmyEL~Ys~~~~~ 343 (366)
T KOG2796|consen 267 NFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVLFNLTTMYELEYSRSMQK 343 (366)
T ss_pred chHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHHHHHHHHHHHHhhhhhhH
Confidence 666777777777666665 666666666666666777777777777766 356655544433333 2333555555555
Q ss_pred hhhHHHHH
Q 003020 832 QSGLQAWM 839 (856)
Q Consensus 832 ~~~~~~~~ 839 (856)
...+..|.
T Consensus 344 k~~l~~~i 351 (366)
T KOG2796|consen 344 KQALLEAV 351 (366)
T ss_pred HHHHHHHH
Confidence 55555553
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0034 Score=56.10 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=103.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCHHHHHH
Q 003020 666 PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD--ANEFTYAM 743 (856)
Q Consensus 666 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~ 743 (856)
.|+...-..|..+....|++.||...|++...--+..|....-.+.++....++...|...++++.+-.| .++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 5777777788888999999999999999888755667777777888888889999999999998887663 23344556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 744 MLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 744 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+++.+...|++.+|+..|+.++..-|.|...+|+ +..+.++|+.++|..-+....+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y--~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIYY--AEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHH--HHHHHHhcchhHHHHHHHHHHH
Confidence 7888899999999999999999887655555544 5567888888877665555544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0012 Score=72.74 Aligned_cols=101 Identities=12% Similarity=0.197 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 721 RQAEEIFEIMKKK--GDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKD 798 (856)
Q Consensus 721 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 798 (856)
+.+.+..++.... .+.++.++..++..+...|++++|...++++++.++ +...|..++.++...|+.++|.+.+++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444555554443 466677888888777788999999999999988874 677888889999999999999999998
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCHHH
Q 003020 799 MVNAAIQPDDFTFKSLGAVLMKCGLEL 825 (856)
Q Consensus 799 ~~~~g~~p~~~~~~~l~~~~~~~G~~~ 825 (856)
+.. +.|...||...-+.-..+.++.
T Consensus 479 A~~--L~P~~pt~~~~~~~~f~~~~~~ 503 (517)
T PRK10153 479 AFN--LRPGENTLYWIENLVFQTSVET 503 (517)
T ss_pred HHh--cCCCCchHHHHHhccccccHHH
Confidence 887 4677666654444444444333
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.7e-05 Score=57.83 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCC
Q 003020 703 DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG-RFEEATRIAKQMRESGL 769 (856)
Q Consensus 703 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 769 (856)
+...|..++..+...|++++|+..|+++++..|.++.+|..++.+|...| ++++|++.++++++..|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45678888999999999999999999999999999999999999999999 79999999999998764
|
... |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.1e-05 Score=50.15 Aligned_cols=34 Identities=56% Similarity=0.812 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003020 323 TYNTLIDTYGKAGQLKEASETFAQMLREGIVPTT 356 (856)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 356 (856)
+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7899999999999999999999999999988873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.9e-05 Score=61.27 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=49.5
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003020 682 VGYLKEAQETYKLLRSLEAS-PDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRI 760 (856)
Q Consensus 682 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 760 (856)
.|++++|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+.++.+......++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777777663321 2334444567777777777777777766 333344555555667777777777777777
Q ss_pred HHH
Q 003020 761 AKQ 763 (856)
Q Consensus 761 ~~~ 763 (856)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00011 Score=56.47 Aligned_cols=63 Identities=13% Similarity=0.291 Sum_probs=38.7
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 749 KRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSL 814 (856)
Q Consensus 749 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 814 (856)
...|++++|++.++++.+..|. +...+..++.+|.+.|++++|.+++++++.. .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 3456666666666666666665 6666666666666666666666666666663 5554444433
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.06 Score=54.27 Aligned_cols=253 Identities=15% Similarity=0.126 Sum_probs=165.0
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH
Q 003020 540 GMGRNYDKACNLFDSMTSHGAVPDKC--SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEM 617 (856)
Q Consensus 540 ~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 617 (856)
.-.|+++.|.+-|+.|... |... -...|.-.-.+.|..+.|.++-+..-+.- +.-...+...+...+..|+++.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 4568888888888888763 2211 23333334456788888888777766543 2223456777888888899999
Q ss_pred HHHHHHHHHHCC-CCCCHH--HHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 003020 618 AEEVYKDMIRFN-VEPDVV--VYGVLINAFAD---VGNVKQAQSYFDAMESAGLPPNAV-IYNSLIKLYTKVGYLKEAQE 690 (856)
Q Consensus 618 A~~~~~~~~~~~-~~~~~~--~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~ 690 (856)
|+++.+.-.... +.++.. .-..|+.+-.. ..+...|...-.+..+. .|+-. .-..-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhh
Confidence 999888766432 334433 22233332221 23566666666665553 44432 23344577889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH---HHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 691 TYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFE---IMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 691 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
+++.+-+....|+.. . +..+.+.|+ .++.-++ ++....|.|......+..+-...|++..|..-.+.+...
T Consensus 285 ilE~aWK~ePHP~ia--~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 285 ILETAWKAEPHPDIA--L--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHHhcCCChHHH--H--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 999998865445432 1 223344554 3333333 344445888889999999999999999999988888876
Q ss_pred CCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCC
Q 003020 768 GLISDLLSYNNVLGLYAV-DGRFKDVIGTFKDMVNAAIQP 806 (856)
Q Consensus 768 ~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~g~~p 806 (856)
. |-...|-.|.++-.. .|+-.++...+-+.++..-.|
T Consensus 359 ~--pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 359 A--PRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred C--chhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 5 455777777777654 499999999999988854444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.097 Score=56.64 Aligned_cols=208 Identities=13% Similarity=0.118 Sum_probs=127.3
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCc--------ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 003020 190 HELNVIHYNIMLRTLGKARKWSYVQSLWDEMSV-KGIVP--------INSTYGTLIDVCSKGGLKEEAVCWLERMNEGGM 260 (856)
Q Consensus 190 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 260 (856)
..|.+..|..+.......-.++-|+..|-+.-. .|++. +...-..=+. .--|.+++|.++|-+|-++.
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh-
Confidence 357788899888877776777888877755332 11110 0011111122 23478888888887776542
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHH
Q 003020 261 EPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEA 340 (856)
Q Consensus 261 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 340 (856)
..+..+.+.|++-+..++++.-.. ..+...-..+|+.+...+.....+++|
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~---------------------d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGS---------------------DDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCC---------------------CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235567777888887777754221 111122246888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 003020 341 SETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEA 420 (856)
Q Consensus 341 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 420 (856)
.+.|..-. +. ...+.++.+..++++...+.+.+ |.+....-.+..++.+.|.-++|.+.|-+--.
T Consensus 816 ~~yY~~~~------~~---e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~- 880 (1189)
T KOG2041|consen 816 AKYYSYCG------DT---ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL- 880 (1189)
T ss_pred HHHHHhcc------ch---HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC-
Confidence 88887642 11 23456666666666655555443 34555666777888888888888777644321
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 421 NLEPDIVSYRTLLYAYSIRRMVCEAEELISEM 452 (856)
Q Consensus 421 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 452 (856)
|. ..+..|...+++.+|.++-++.
T Consensus 881 ---pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 881 ---PK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred ---cH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 22 2345566667777777765543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.065 Score=57.93 Aligned_cols=205 Identities=14% Similarity=0.116 Sum_probs=117.4
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCC--------CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 003020 388 PPDTRTYNILIFLHAKNDKISMASRYFWKMKEA-NLEP--------DIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLE 458 (856)
Q Consensus 388 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~--------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 458 (856)
.|....|..+.......-.++-|...|-+...- |++. +...-.+=+.+ --|.+++|+++|-+|.+.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence 577788888887777767777777777655431 2110 00111111222 24889999999888766543
Q ss_pred CCHhhHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 003020 459 IDEYTQSALTRMYIEAGMLEKSWLWFRRFHLA--GDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMV 536 (856)
Q Consensus 459 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 536 (856)
.+.++.+.|++-...++++.-... +..-..+|..++..+.....+++|.+.|..... ....+
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ 829 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQI 829 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHH
Confidence 355666777776555554432111 112235777888888888888888887765442 12344
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHH
Q 003020 537 KAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLE 616 (856)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 616 (856)
.++.+...+++-..+-..+ +.+....-.+..++.+.|.-++|.+.+-+. +. | ...+..|...+++.
T Consensus 830 ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWG 895 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHH
Confidence 5555555555544444433 234455556667777777777776655332 11 1 22345566666677
Q ss_pred HHHHHHHHH
Q 003020 617 MAEEVYKDM 625 (856)
Q Consensus 617 ~A~~~~~~~ 625 (856)
+|.++-++.
T Consensus 896 ~avelaq~~ 904 (1189)
T KOG2041|consen 896 EAVELAQRF 904 (1189)
T ss_pred HHHHHHHhc
Confidence 776665544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.003 Score=64.51 Aligned_cols=186 Identities=16% Similarity=0.203 Sum_probs=89.2
Q ss_pred ccHHHHhhHhhhhcChhHHHHHHHhcCCHHHHHHHHHHhHHc----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003020 146 KDLDEALKPWAENLSNKERSIILKEQSSWERALEIFEWFKRQ----ECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMS 221 (856)
Q Consensus 146 ~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 221 (856)
.++++|...|.+ .+..++..++|++|.+.|..+... +....-...|......|.+ .++++|+..+++..
T Consensus 29 ~~~e~Aa~~y~~------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~ 101 (282)
T PF14938_consen 29 PDYEEAADLYEK------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAI 101 (282)
T ss_dssp HHHHHHHHHHHH------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHH
Confidence 477888888876 455678888888888888866432 2111112344444444433 36777777666654
Q ss_pred hCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhc-CChhHHHHHHHHHhhhccccCCc
Q 003020 222 VKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKA-GEFQKAEEFFKKWSSRESLRHGE 300 (856)
Q Consensus 222 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~ 300 (856)
. .|...|++..|-..+.++ ...|... |+++.|.+.|++....
T Consensus 102 ~---------------~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~------- 144 (282)
T PF14938_consen 102 E---------------IYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAEL------- 144 (282)
T ss_dssp H---------------HHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHH-------
T ss_pred H---------------HHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHH-------
Confidence 3 333444444443333332 2223333 4455555544443210
Q ss_pred chhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHH-hHHHHHHHHhcCCCHHH
Q 003020 301 DTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIV-----PTTV-TFNTMIHIYGNNDQLAE 374 (856)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-----p~~~-~~~~ll~~~~~~g~~~~ 374 (856)
++... ....-...+..+...+.+.|++++|+++|++....-.. .+.. .|...+-++...|++..
T Consensus 145 --------y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~ 214 (282)
T PF14938_consen 145 --------YEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVA 214 (282)
T ss_dssp --------HHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHH
T ss_pred --------HHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHH
Confidence 00000 00011234455566666666777777776666553221 1111 22223334445566666
Q ss_pred HHHHHHHHHhC
Q 003020 375 VDSLIKKMEEL 385 (856)
Q Consensus 375 A~~~~~~~~~~ 385 (856)
|...+++....
T Consensus 215 A~~~~~~~~~~ 225 (282)
T PF14938_consen 215 ARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHGTT
T ss_pred HHHHHHHHHhh
Confidence 66666666543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0018 Score=63.41 Aligned_cols=115 Identities=14% Similarity=0.122 Sum_probs=93.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh
Q 003020 656 YFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE---RSMVRQAEEIFEIMKK 732 (856)
Q Consensus 656 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 732 (856)
-++.-+..+ |-|...|..|+.+|...|+++.|...|.+..+... ++...+..+..++.. ..+..++..++++++.
T Consensus 144 ~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 144 RLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 334444443 77889999999999999999999999999988432 445556666666543 3357889999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003020 733 KGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISD 772 (856)
Q Consensus 733 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 772 (856)
.+|.|+.+...|+..+..+|++.+|...|+.|++..|.-+
T Consensus 222 ~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999977633
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.66 E-value=8e-05 Score=47.77 Aligned_cols=33 Identities=36% Similarity=0.606 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003020 322 YTYNTLIDTYGKAGQLKEASETFAQMLREGIVP 354 (856)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 354 (856)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888988998888888877
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0034 Score=69.17 Aligned_cols=68 Identities=7% Similarity=-0.107 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 702 PDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 702 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.+...|..+.-.....|++++|...++++....| +...|..++.++...|+.++|...++++...+|.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3456666666666677899999999999998876 6788889999999999999999999999888776
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0011 Score=58.84 Aligned_cols=89 Identities=9% Similarity=-0.075 Sum_probs=79.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003020 712 DLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKD 791 (856)
Q Consensus 712 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 791 (856)
.-+...|++++|..+|+-+...++.|+.-|..|+.++-..+++++|+..|..+...++. |+..+...+.+|...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 34457899999999999998888899999999999999999999999999999888876 88888899999999999999
Q ss_pred HHHHHHHHHH
Q 003020 792 VIGTFKDMVN 801 (856)
Q Consensus 792 A~~~~~~~~~ 801 (856)
|...|+..++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999999887
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00015 Score=55.62 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=52.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003020 715 SERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNN 778 (856)
Q Consensus 715 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 778 (856)
...|++++|++.|+++....|.+..++..++.+|.+.|++++|.++++++....|. ++..+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~-~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD-NPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT-HHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-HHHHHHH
Confidence 46788999999999999988999999999999999999999999999999988765 4444433
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.015 Score=57.43 Aligned_cols=57 Identities=11% Similarity=-0.042 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 743 MMLIMYKRNGRFEEATRIAKQMRESGLIS--DLLSYNNVLGLYAVDGRFKDVIGTFKDM 799 (856)
Q Consensus 743 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 799 (856)
.++.-|.+.|++..|+.-++.+++.-|.. ...+...++.+|...|..++|.++...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 45566777888888888888888775542 2356677778888888888887766554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0017 Score=64.65 Aligned_cols=102 Identities=14% Similarity=0.062 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN---EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS--DLLSYNNVL 780 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~ 780 (856)
.|...+..+.+.|++++|+..|+.+.+..|.+ +.++..++.+|...|++++|+..|+++++..|.. .+.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 44444444455677777777777777776655 3567777777777788888888887777665441 235566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 781 GLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 781 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
.++...|++++|..+|++.++. .|+..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 7777778888888888777764 45443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.60 E-value=8.1e-05 Score=48.11 Aligned_cols=33 Identities=39% Similarity=0.485 Sum_probs=16.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 003020 393 TYNILIFLHAKNDKISMASRYFWKMKEANLEPD 425 (856)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 425 (856)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344555555555555555555555555444444
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0043 Score=53.03 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=21.3
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 714 YSERSMVRQAEEIFEIMKKKGDAN---EFTYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 714 ~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
+-..|+.++|+.+|++....+... ...+..++..+...|++++|+.++++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444433111 12333344444444444444444444443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00048 Score=53.72 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=37.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 746 IMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFT 810 (856)
Q Consensus 746 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 810 (856)
..|.+.+++++|+++++++++.+|. ++..|...+.++...|++++|.+.+++.++. .|+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHH
Confidence 3455666666666666666666655 5566666666666666666666666666653 444443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.097 Score=49.90 Aligned_cols=228 Identities=10% Similarity=0.112 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----------CCCCH----HHHH-HHHH--HHHcCCChHHHHHHHHHH
Q 003020 529 VLVFNVMVKAYGMGRNYDKACNLFDSMTSHG-----------AVPDK----CSYN-SLIQ--ILAGADLPHMAKRYLRKM 590 (856)
Q Consensus 529 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~p~~----~~~~-~ll~--~~~~~~~~~~A~~~~~~~ 590 (856)
...|+.-+.++.+.+..++|..-+....+.+ +-|+. +.|. .++. +....|.+.+.+.-+..+
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 5667777778888888887776665554331 11211 1111 1111 222345555554444433
Q ss_pred HHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003020 591 QEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAV 670 (856)
Q Consensus 591 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 670 (856)
+.. ...++.-+......+..++.|++-. ....+.++..+.-.|.+.-.+.++++.++...+.++.
T Consensus 149 ~~~--------V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~ 213 (366)
T KOG2796|consen 149 KTV--------VSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQ 213 (366)
T ss_pred HHH--------HHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHH
Confidence 321 1222222333333355566665533 2244566777777888888999999999987777888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSN-----CMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMML 745 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 745 (856)
....+++.-.+.|+.+.|...|+...+..-..+..+.+ .....+.-++++..|...+.+++..++.++...+.-+
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKA 293 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKA 293 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHH
Confidence 99999999999999999999999776633233333333 3334566788999999999999999999999998888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003020 746 IMYKRNGRFEEATRIAKQMRESGLIS 771 (856)
Q Consensus 746 ~~~~~~g~~~~A~~~~~~~~~~~~~p 771 (856)
-+..-.|+..+|++..+.+.+..|.|
T Consensus 294 LcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 294 LCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 88888999999999999999987765
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00017 Score=46.19 Aligned_cols=32 Identities=38% Similarity=0.461 Sum_probs=16.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 003020 393 TYNILIFLHAKNDKISMASRYFWKMKEANLEP 424 (856)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 424 (856)
+|+.++.++++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555544443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.015 Score=59.44 Aligned_cols=95 Identities=15% Similarity=0.179 Sum_probs=43.8
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHhCC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----CH-
Q 003020 707 SNCMIDLYSER-SMVRQAEEIFEIMKKKG--DAN----EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-----DL- 773 (856)
Q Consensus 707 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~- 773 (856)
+..+...|... |++++|++.|+++.+.. ... ...+..++..+.+.|++++|+++|+++....... +.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 33444445444 55666666665554432 111 1234455555666666666666666655432221 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 774 LSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 774 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
..+...+-++...|++..|...+++...
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1222333455555666666666666544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.003 Score=63.50 Aligned_cols=284 Identities=15% Similarity=0.065 Sum_probs=156.4
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHh--c--CCC-CCCHhhHHHHHH
Q 003020 399 FLHAKNDKISMASRYFWKMKEANLEPDI----VSYRTLLYAYSIRRMVCEAEELISEMD--G--GGL-EIDEYTQSALTR 469 (856)
Q Consensus 399 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~--~--~~~-~p~~~~~~~l~~ 469 (856)
.-+++.|+......+|+..++.|- .|. ..|..|..+|.-.+++++|++....=+ . .|- .-...+-..+.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 345666666666666666666552 232 345555666666667777766543211 0 010 011223334555
Q ss_pred HHHHcCChHHHHHHHHHHH----hcC--CCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccC
Q 003020 470 MYIEAGMLEKSWLWFRRFH----LAG--DMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGR 543 (856)
Q Consensus 470 ~~~~~g~~~~a~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 543 (856)
.+--.|.+++|.....+-+ +.+ -....++.+++..|...|+.-.- ..|.+...++.=+. .
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~---------~~pee~g~f~~ev~-----~ 169 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL---------EAPEEKGAFNAEVT-----S 169 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC---------CChhhcccccHHHH-----H
Confidence 5555666776655443322 111 12334556666666665543110 00101111111100 0
Q ss_pred CHHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHH----HcCCC-CChHhHHHHHHHHHhcC
Q 003020 544 NYDKACNLFDSMTS----HGA-VPDKCSYNSLIQILAGADLPHMAKRYLRKMQ----EAGLV-SDCIPYCAVISSYMKLG 613 (856)
Q Consensus 544 ~~~~A~~~~~~m~~----~~~-~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g 613 (856)
.++.|.+.|.+=++ .|- -.....|..|.+.|.-.|+++.|+..++.-+ +.|-. .....+..+.+++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 12334444433211 110 0122356677777778899999988776533 22311 12335778888899999
Q ss_pred CHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcC
Q 003020 614 QLEMAEEVYKDMIR----FNV-EPDVVVYGVLINAFADVGNVKQAQSYFDAMESA-----GLPPNAVIYNSLIKLYTKVG 683 (856)
Q Consensus 614 ~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g 683 (856)
+++.|.+.|+.... .|- .....+.-++...|.-...+++|+.++.+-+.. +..-....+.+|..++...|
T Consensus 250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 99999999887653 221 223446667888888888899999888765431 11234567888999999999
Q ss_pred CHHHHHHHHHHHHh
Q 003020 684 YLKEAQETYKLLRS 697 (856)
Q Consensus 684 ~~~~A~~~~~~~~~ 697 (856)
..++|+.+.+..++
T Consensus 330 ~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 330 EHRKALYFAELHLR 343 (639)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999887765544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.043 Score=54.29 Aligned_cols=80 Identities=8% Similarity=-0.054 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhh---HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 003020 193 NVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINST---YGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGI 269 (856)
Q Consensus 193 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 269 (856)
++..+-.....+...|++++|+..|+++....+.+ ..+ ...++.++.+.+++++|+..|++.++..+.....-+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 34333345556667899999999999988865442 222 35667788899999999999999988754433333333
Q ss_pred HHHH
Q 003020 270 VVQM 273 (856)
Q Consensus 270 ll~~ 273 (856)
...+
T Consensus 110 Y~~g 113 (243)
T PRK10866 110 YMRG 113 (243)
T ss_pred HHHH
Confidence 3333
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.21 Score=51.52 Aligned_cols=133 Identities=14% Similarity=0.192 Sum_probs=86.0
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 003020 599 CIPYCAVISSYMKLGQLEMAEEVYKDMIRFN-VEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVI-YNSLI 676 (856)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~ 676 (856)
..+|...++.-.+..-.+.|..+|-++.+.+ +.+++.++++++..++ .|++.-|..+|+--... -||... -.-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456666666666667778888888887776 5667777777777654 46777777777766554 234333 34455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003020 677 KLYTKVGYLKEAQETYKLLRSLEASPD--VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD 735 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 735 (856)
..+...++-+.|..+|+...+. +..+ ...|..+++--..-|+...+..+-+++.+..|
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 5666777777777777754431 1112 34677777766677777777777777766554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0011 Score=51.61 Aligned_cols=60 Identities=17% Similarity=0.095 Sum_probs=54.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 711 IDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 711 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
...|.+.+++++|.+.++.+....|.++..|...+.++...|++++|.+.++++++.+|.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 356788999999999999999999999999999999999999999999999999998876
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0039 Score=63.36 Aligned_cols=130 Identities=6% Similarity=-0.080 Sum_probs=84.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCCchhhHHHHHHHh
Q 003020 428 SYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIE-AGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYG 506 (856)
Q Consensus 428 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 506 (856)
+|..++...-+.+..+.|..+|.+.++.+ ..+...|...+.+-.. .++.+.|..+|+...+..+.+.+.|...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 46666666666666777777777776432 2234455555555444 344455777777777777777777777777777
Q ss_pred hcCCHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 003020 507 ERGHVLEAERAFICCQEGKKLT---VLVFNVMVKAYGMGRNYDKACNLFDSMTSH 558 (856)
Q Consensus 507 ~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 558 (856)
..++.+.|..+|+++....+.+ ..+|...++.-.+.|+.+.+.++.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777664433 357888888777888888888877777764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.23 Score=51.23 Aligned_cols=135 Identities=17% Similarity=0.190 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHH
Q 003020 633 DVVVYGVLINAFADVGNVKQAQSYFDAMESAG-LPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTS-NCM 710 (856)
Q Consensus 633 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l 710 (856)
=..+|...+..-.+..-.+.|..+|-+..+.+ +.+++..+++++..++ .|+..-|.++|+.-...- ||...| ...
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHH
Confidence 34577778888778888899999999999888 5678888888888765 678888999998665532 443333 345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 711 IDLYSERSMVRQAEEIFEIMKKKGDAN--EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 711 ~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
+.-+...++-..|..+|+....+-..+ ..+|..++.--..-|+...+..+-+++.+.-|.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 566778899999999999766554333 567888888888889999998888888887554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.21 Score=50.56 Aligned_cols=286 Identities=14% Similarity=0.075 Sum_probs=144.3
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHH--HHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHH
Q 003020 438 IRRMVCEAEELISEMDGGGLEIDEYTQSALTRM--YIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAE 515 (856)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 515 (856)
..|+-..|.++-.+..+. +..|...+..++.+ -.-.|+++.|.+-|+.|......-.-....+.-.-.+.|..+.|+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 356666676666554321 23344444444433 233566666666666665332222222222222233445555555
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 003020 516 RAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGL 595 (856)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 595 (856)
..-+...+.-+.-.-.+...+...+..|+|+.|+++.+.-....+ +
T Consensus 175 ~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v----------------------------------i 220 (531)
T COG3898 175 HYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV----------------------------------I 220 (531)
T ss_pred HHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh----------------------------------h
Confidence 555444444444445555555555555555555555554333211 1
Q ss_pred CCChHh--HHHHHHH--HH-hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003020 596 VSDCIP--YCAVISS--YM-KLGQLEMAEEVYKDMIRFNVEPDVV-VYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA 669 (856)
Q Consensus 596 ~~~~~~--~~~l~~~--~~-~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 669 (856)
.++..- -..|+.+ .. -.-+...|...-.+..+ +.||.. .-..-..++.+.|+..++-.+++.+-+....|+
T Consensus 221 e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~- 297 (531)
T COG3898 221 EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD- 297 (531)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-
Confidence 111111 0111111 01 11245555555555554 345544 223344667788888888888888877643333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRS-LEASPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIM 747 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 747 (856)
.+.. ..+.+.|+ .++.-+++..+ ...+|+ ......+..+-...|++..|..--+.+... .|....|..|.+.
T Consensus 298 -ia~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~-~pres~~lLlAdI 371 (531)
T COG3898 298 -IALL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE-APRESAYLLLADI 371 (531)
T ss_pred -HHHH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh-CchhhHHHHHHHH
Confidence 3222 12234443 34444443333 123343 445556666777778887777766666544 3445566666666
Q ss_pred HHHc-CCHHHHHHHHHHHHHc
Q 003020 748 YKRN-GRFEEATRIAKQMRES 767 (856)
Q Consensus 748 ~~~~-g~~~~A~~~~~~~~~~ 767 (856)
-... |+-.++...+-+.++.
T Consensus 372 eeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 372 EEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HhhccCchHHHHHHHHHHhcC
Confidence 5444 8888888888888765
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0032 Score=66.31 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003020 562 PDKCSYNSLIQILAGADLPHMAKRYLRKMQEAG--LVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGV 639 (856)
Q Consensus 562 p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 639 (856)
.+...+..+++.+....+.+.+..++.+..... ...-..|..++++.|.+.|..+.++.+++.=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 344444455555555555555555555544431 111122333555555555555555555555555555555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 640 LINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLY 679 (856)
Q Consensus 640 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 679 (856)
+++.+.+.|++..|.++...|...+...+..|+...+.+|
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 5555555555555555555554444444444444444333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00025 Score=44.27 Aligned_cols=31 Identities=52% Similarity=0.775 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003020 322 YTYNTLIDTYGKAGQLKEASETFAQMLREGI 352 (856)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 352 (856)
++||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0043 Score=63.12 Aligned_cols=96 Identities=8% Similarity=-0.029 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003020 705 YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYA 784 (856)
Q Consensus 705 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 784 (856)
.++..+.-+|.+.+++.+|++..++.+..+|+|+..+..-+.+|...|+++.|+..|+++++..|. |-.+-..++.+--
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 456778888999999999999999999999999999999999999999999999999999999887 7677777776666
Q ss_pred hcCCHHH-HHHHHHHHHH
Q 003020 785 VDGRFKD-VIGTFKDMVN 801 (856)
Q Consensus 785 ~~g~~~~-A~~~~~~~~~ 801 (856)
+..++.+ ..++|..|..
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 5555544 4778888876
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.072 Score=47.94 Aligned_cols=133 Identities=20% Similarity=0.178 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHH
Q 003020 631 EPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLE---ASPDVYTS 707 (856)
Q Consensus 631 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~ 707 (856)
.|++..--.+..++...|++.+|...|++...--+..|....-.+.++....+++.+|...++.+-+.+ -+||..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~-- 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH-- 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch--
Confidence 456666666777777777888888777777664455667777777777777777777777777766632 234433
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 708 NCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 708 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
-.+.+.+...|++++|+..|+.+.... |++..-......+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y-pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY-PGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC-CCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 345677777788888888887777653 3344444445566677776666555544433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0047 Score=64.42 Aligned_cols=65 Identities=9% Similarity=-0.064 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 703 DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEF---TYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 703 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
+...++.+..+|...|++++|+..|+++++..|.+.. +|++++.+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3556667777777777777777777777777666653 4777777777777777777777777765
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.2 Score=49.57 Aligned_cols=222 Identities=16% Similarity=0.107 Sum_probs=149.1
Q ss_pred ChHHHHHHHHHHHHcCCC-CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 579 LPHMAKRYLRKMQEAGLV-SDCIPYCAVISSYMKLGQLEMAEEVYKDMIRF-NVEPDVVVYGVLINAFADVGNVKQAQSY 656 (856)
Q Consensus 579 ~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 656 (856)
....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444443221 12455666666777777788877777777642 2234555666667777777778888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003020 657 FDAMESAGLPPNAVIYNSLIK-LYTKVGYLKEAQETYKLLRSLEA--SPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKK 733 (856)
Q Consensus 657 ~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 733 (856)
+.........+ ......... .+...|+++.|...|++...... ......+......+...++++.|...+.++...
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 88877653222 222222233 67788888888888888755221 122334444444566788889999999888888
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 734 GDA-NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 734 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
.+. ....+..+...+...++++.|...+.......+. ....+..+...+...|.++++...+++....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777 6788888888888888999999999998887654 4566666666666777788998888888774
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0016 Score=68.51 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=71.7
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003020 319 LSSYTYNTLIDTYGKAGQLKEASETFAQMLRE--GIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNI 396 (856)
Q Consensus 319 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 396 (856)
.++.....+++.+....+.+++..++-+.... ....-..|..++++.|...|..+.+..++..=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34555566666666666666666666666543 1111223455666777777777777777666666666677777777
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 003020 397 LIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYS 437 (856)
Q Consensus 397 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 437 (856)
||+.+.+.|++..|.++...|...+...+..|+...+.+|.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 77777777777777776666655444445455544444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0031 Score=64.09 Aligned_cols=130 Identities=12% Similarity=-0.007 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhh-cCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 003020 462 YTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGE-RGHVLEAERAFICCQEGKKLTVLVFNVMVKAYG 540 (856)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 540 (856)
.+|..+++...+.+..+.|+.+|.++..........|...+.+... .++.+.|..+|+...+..+.+...|...++.+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3567777888888888889999998887777778888888888555 455555888888888888888888888888888
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 003020 541 MGRNYDKACNLFDSMTSHGAVPDK---CSYNSLIQILAGADLPHMAKRYLRKMQE 592 (856)
Q Consensus 541 ~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 592 (856)
..++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++..++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888765 32222 2455555555555555555555555544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.054 Score=57.97 Aligned_cols=101 Identities=13% Similarity=0.144 Sum_probs=73.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 003020 425 DIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDG 504 (856)
Q Consensus 425 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 504 (856)
+..+...+...+-+...+.-|-++|.+|-.. ..++++....+++++|..+-++.. ....++|...+..
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP---e~~~dVy~pyaqw 813 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP---EFKDDVYMPYAQW 813 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc---cccccccchHHHH
Confidence 4445555555566677788888888887532 346778888899999987776654 4556677778888
Q ss_pred HhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 003020 505 YGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSH 558 (856)
Q Consensus 505 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 558 (856)
+....++++|.+.|. +.|+-.+|.++++++...
T Consensus 814 LAE~DrFeEAqkAfh---------------------kAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFH---------------------KAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhhHHHHHHHHH---------------------HhcchHHHHHHHHHhhhh
Confidence 888888888877664 557788999999887654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0089 Score=54.20 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 003020 740 TYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN-----AAIQPDDFTFK 812 (856)
Q Consensus 740 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~ 812 (856)
+...++..+...|++++|++.+++++..+|- +...|..++.+|...|+..+|++.|+++.+ .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4556777888899999999999999999987 889999999999999999999999988755 58899887643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.016 Score=60.76 Aligned_cols=101 Identities=9% Similarity=0.054 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 719 MVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKD 798 (856)
Q Consensus 719 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 798 (856)
+..+|.++.+++.+.++.|+.+...++.++...++++.|...|+++...+|. .+.+|...+..+.-.|+.++|.+.+++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556677777777777777777777777777777777777777777777766 667777777777777777777777777
Q ss_pred HHHcCCCCCH---HHHHHHHHHHHHcC
Q 003020 799 MVNAAIQPDD---FTFKSLGAVLMKCG 822 (856)
Q Consensus 799 ~~~~g~~p~~---~~~~~l~~~~~~~G 822 (856)
.++ +.|-. ......+..|+..+
T Consensus 398 alr--LsP~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 398 SLQ--LEPRRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred Hhc--cCchhhHHHHHHHHHHHHcCCc
Confidence 666 24432 22334444566666
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.025 Score=48.47 Aligned_cols=90 Identities=19% Similarity=0.120 Sum_probs=45.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHH
Q 003020 606 ISSYMKLGQLEMAEEVYKDMIRFNVEPD--VVVYGVLINAFADVGNVKQAQSYFDAMESAGLPP---NAVIYNSLIKLYT 680 (856)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~ 680 (856)
..++-..|+.++|+.+|++.+..|+... ...+-.+...+...|++++|..++++..... |. +......+..++.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHH
Confidence 3344555666666666666666554432 2244445555666666666666666655431 11 1122222333445
Q ss_pred hcCCHHHHHHHHHHHH
Q 003020 681 KVGYLKEAQETYKLLR 696 (856)
Q Consensus 681 ~~g~~~~A~~~~~~~~ 696 (856)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5566666666554433
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.067 Score=57.32 Aligned_cols=100 Identities=18% Similarity=0.151 Sum_probs=57.8
Q ss_pred CchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003020 494 SSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQI 573 (856)
Q Consensus 494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 573 (856)
..++.......+.+...+.-|.++|.++.. ...+++.....++|++|..+-++..+- .||. |..-.+-
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dV--y~pyaqw 813 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDV--YMPYAQW 813 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCccc--cccc--cchHHHH
Confidence 344444455555556666667777766543 235667777788888888887776653 3332 2233333
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 574 LAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIR 627 (856)
Q Consensus 574 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 627 (856)
++...++++|.+ +|.+.|+..+|.++++++..
T Consensus 814 LAE~DrFeEAqk----------------------AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 814 LAENDRFEEAQK----------------------AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhhhHHHHHH----------------------HHHHhcchHHHHHHHHHhhh
Confidence 444445444443 34556666677777666643
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0052 Score=50.35 Aligned_cols=78 Identities=17% Similarity=0.302 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHhHHHHHHHHhcCC--------CHHHHHHHHHHHHhCCCCCCHHH
Q 003020 323 TYNTLIDTYGKAGQLKEASETFAQMLREGI-VPTTVTFNTMIHIYGNND--------QLAEVDSLIKKMEELHCPPDTRT 393 (856)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~ 393 (856)
+....|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+++.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 444556667777889999999999998888 888889988888776532 11233444444444444444444
Q ss_pred HHHHHHH
Q 003020 394 YNILIFL 400 (856)
Q Consensus 394 ~~~li~~ 400 (856)
|+.++..
T Consensus 107 Ynivl~~ 113 (120)
T PF08579_consen 107 YNIVLGS 113 (120)
T ss_pred HHHHHHH
Confidence 4444433
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0098 Score=59.24 Aligned_cols=101 Identities=12% Similarity=0.044 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD--VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN---EFTYAMM 744 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l 744 (856)
..|...+..+.+.|++++|+..|+.+++..+... ...+..++.+|...|++++|...|+.+.+..|.+ +.++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3444444444556777777777777766322111 2345566777777777777777777777665443 4455556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 745 LIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 745 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
+.++...|++++|.++|+++++..|.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 77777778888888888888777665
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0011 Score=52.42 Aligned_cols=64 Identities=19% Similarity=0.325 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 738 EFTYAMMLIMYKRNGRFEEATRIAKQMRES----GLI-SD-LLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 738 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
..+++.++.+|...|++++|+..++++++. |.. |+ ..++..++.+|...|++++|++++++.++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346788888999999999999999888754 222 12 46788999999999999999999998875
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00072 Score=42.10 Aligned_cols=29 Identities=41% Similarity=0.496 Sum_probs=14.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 003020 231 TYGTLIDVCSKGGLKEEAVCWLERMNEGG 259 (856)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 259 (856)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44555555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.011 Score=48.46 Aligned_cols=80 Identities=16% Similarity=0.340 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 003020 742 AMMLIMYKRNGRFEEATRIAKQMRESGL-ISDLLSYNNVLGLYAVDG--------RFKDVIGTFKDMVNAAIQPDDFTFK 812 (856)
Q Consensus 742 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~g~~p~~~~~~ 812 (856)
...+.-+...+++...-.+|+.+...|+ .|+..+|+.++....+.. +.-+.+.+|+.|+..+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455666677889999999999988888 788889988887766443 3456789999999999999999999
Q ss_pred HHHHHHHHc
Q 003020 813 SLGAVLMKC 821 (856)
Q Consensus 813 ~l~~~~~~~ 821 (856)
.++..|.+.
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 999988764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.66 Score=50.20 Aligned_cols=123 Identities=12% Similarity=0.060 Sum_probs=75.5
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHH-HHH
Q 003020 460 DEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVM-VKA 538 (856)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-i~~ 538 (856)
+..++...+.--...|+.+.....|+++........+.|...+......|+.+-|..++....+...++......+ ...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3456777777778888888888888888877677777777777777777887777777766555443332222222 222
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCChHHHH
Q 003020 539 YGMGRNYDKACNLFDSMTSHGAVPDKC-SYNSLIQILAGADLPHMAK 584 (856)
Q Consensus 539 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~A~ 584 (856)
.-..|+++.|..+++.+...- |+.. .-..-+....+.|..+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 334567788888887777652 4322 1122223334455555554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.054 Score=52.12 Aligned_cols=54 Identities=20% Similarity=0.186 Sum_probs=22.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 644 FADVGNVKQAQSYFDAMESAGL--PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 644 ~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
+...|++.+|...|+.+...-. +--....-.++.++.+.|++++|...++..++
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555443210 01112333444444455555555555544444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.13 Score=49.48 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=19.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHcCCHH
Q 003020 711 IDLYSERSMVRQAEEIFEIMKKKGDANEF---TYAMMLIMYKRNGRFE 755 (856)
Q Consensus 711 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~ 755 (856)
++.|.+.|.+..|..-++.+++..|.... ++..++.+|.+.|..+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 34444445555555555555444443332 2333444444444444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.67 Score=48.18 Aligned_cols=149 Identities=8% Similarity=0.089 Sum_probs=85.8
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCcCh------hhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH--H
Q 003020 203 TLGKARKWSYVQSLWDEMSVKGIVPIN------STYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQM--Y 274 (856)
Q Consensus 203 ~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~ 274 (856)
.+.+++++.+|..+|.++.... ..+. ..-+.++++|... +.+.....+....+. .| ...|-.+..+ .
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 4567899999999999987642 2122 2345677777543 445444444444443 22 2233333333 4
Q ss_pred HhcCChhHHHHHHHHHhhhcc----ccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003020 275 KKAGEFQKAEEFFKKWSSRES----LRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLRE 350 (856)
Q Consensus 275 ~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 350 (856)
.+.+++.+|.+.+..+..... .-...++... -+|-..=+..++.+...|++.++..+++++...
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l------------~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQL------------FSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHH------------hhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 578999999999988864210 0000011000 012233355677778888888888888887654
Q ss_pred CCC----CCHHhHHHHHHHHhc
Q 003020 351 GIV----PTTVTFNTMIHIYGN 368 (856)
Q Consensus 351 g~~----p~~~~~~~ll~~~~~ 368 (856)
=++ -+..+|+.++-.+++
T Consensus 158 llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 158 LLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HhhhhhcccHHHHHHHHHHHhH
Confidence 322 567777776655543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.036 Score=48.32 Aligned_cols=93 Identities=13% Similarity=0.091 Sum_probs=67.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHH
Q 003020 710 MIDLYSERSMVRQAEEIFEIMKKKGDAN---EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDL--LSYNNVLGLYA 784 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~ 784 (856)
-.....+.|++++|.+.|+.+....|.. ..+...|+.+|.+.|++++|+..+++.+++.|.-.- ..+...+-++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3444557899999999999998887544 456778899999999999999999999999877222 34444454455
Q ss_pred hcCC---------------HHHHHHHHHHHHHc
Q 003020 785 VDGR---------------FKDVIGTFKDMVNA 802 (856)
Q Consensus 785 ~~g~---------------~~~A~~~~~~~~~~ 802 (856)
.+.. ..+|..-|+++++.
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 5544 56677777777663
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.91 Score=49.19 Aligned_cols=207 Identities=8% Similarity=0.014 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHHHHCC---C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003020 614 QLEMAEEVYKDMIRFN---V----EPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLK 686 (856)
Q Consensus 614 ~~~~A~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 686 (856)
...+....|+.-++.- + +++..+|...+..-...|+.+.+.-+|++..-- +..-...|--.+.-....|+.+
T Consensus 270 ~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~ 348 (577)
T KOG1258|consen 270 EEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVS 348 (577)
T ss_pred hHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchh
Confidence 3444455555544431 1 235568888888888889999988888887532 1222344545555555568888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHH---HHHHH
Q 003020 687 EAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEAT---RIAKQ 763 (856)
Q Consensus 687 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~ 763 (856)
-|..++....+...+..+.+--.-.......|+++.|..+++.+.+.-|.....-..-+....+.|+.+.+. .++..
T Consensus 349 ~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~ 428 (577)
T KOG1258|consen 349 LANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSS 428 (577)
T ss_pred HHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHH
Confidence 888888777765443333332222223445778999999999988877555555555666677888888877 33333
Q ss_pred HHHcCCCCC--HHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003020 764 MRESGLISD--LLSYNNVLG-LYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 764 ~~~~~~~p~--~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G 822 (856)
..+....+. ...+...++ .+.-.++.+.|..++.++.+. +.++...|..+++.....+
T Consensus 429 ~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 429 IYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 332221111 122222332 234567788888888888885 3444455777777776666
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.036 Score=49.55 Aligned_cols=92 Identities=11% Similarity=-0.004 Sum_probs=74.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHH
Q 003020 467 LTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYD 546 (856)
Q Consensus 467 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 546 (856)
...-+...|++++|..+|+-+...++.+.+-|..++.++...+++++|+..|..+....+.|+....-...+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 34445677888888888888888888888888888888888888888888888777776777777777888888888888
Q ss_pred HHHHHHHHHHhC
Q 003020 547 KACNLFDSMTSH 558 (856)
Q Consensus 547 ~A~~~~~~m~~~ 558 (856)
.|...|....+.
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 888888887763
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.021 Score=53.19 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=39.4
Q ss_pred CCHHhHHHHHHHHh-----cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003020 354 PTTVTFNTMIHIYG-----NNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAK 403 (856)
Q Consensus 354 p~~~~~~~ll~~~~-----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 403 (856)
.+..+|..++..|. +.|..+-+...+..|.+.|+..|..+|+.|++.+=+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 46677777777775 457788888888888888888888899888887654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.21 Score=51.85 Aligned_cols=162 Identities=16% Similarity=0.155 Sum_probs=76.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003020 604 AVISSYMKLGQLEMAEEVYKDMIRFN---VEPDVVVYGVLINAFAD---VGNVKQAQSYFDAMESAGLPPNAVIYNSLIK 677 (856)
Q Consensus 604 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 677 (856)
.++-+|....+++..+++.+.+.... +......-..+.-++.+ .|+.++|+.++..+....-.+++.+|..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33444666666666666666665431 11111222233334444 6666666666666444334566666666665
Q ss_pred HHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH----HHHHHH---H-HHHhCC----CC
Q 003020 678 LYTK---------VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVR----QAEEIF---E-IMKKKG----DA 736 (856)
Q Consensus 678 ~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~-~~~~~~----~~ 736 (856)
.|-. ....++|+..|.+.-+ +.|+..+--.++..+...|.-. +..++- . .+.+++ ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5421 1125566666666544 2344433223333333333211 111111 1 111111 23
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 737 NEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 737 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
+-+.+.+++.++.-.|++++|.+.++++.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4445555666666666666666666666655
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.026 Score=47.36 Aligned_cols=90 Identities=17% Similarity=0.061 Sum_probs=68.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHHhcCC
Q 003020 713 LYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRES-GLISDL---LSYNNVLGLYAVDGR 788 (856)
Q Consensus 713 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~---~~~~~l~~~~~~~g~ 788 (856)
+....|+.+.|++.|.+.+...|..+.+|+.-..++.-+|+.++|+.-++++++. |+. .. .+|..-+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 4567788888888888888777888888888888888888888888888888876 333 22 345666677778888
Q ss_pred HHHHHHHHHHHHHcC
Q 003020 789 FKDVIGTFKDMVNAA 803 (856)
Q Consensus 789 ~~~A~~~~~~~~~~g 803 (856)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888887777655
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.38 Score=49.98 Aligned_cols=169 Identities=14% Similarity=0.176 Sum_probs=113.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003020 638 GVLINAFADVGNVKQAQSYFDAMESAG---LPPNAVIYNSLIKLYTK---VGYLKEAQETYKLLRSLEASPDVYTSNCMI 711 (856)
Q Consensus 638 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 711 (856)
..++-+|....+++.-+++++.+.... +......-....-++.+ .|+.++|++++..+......+++.+|..++
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 345557889999999999999997641 22233333345556667 899999999999976655668888998888
Q ss_pred HHHHH---------cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH----HHHHHHH----HHHHHcCC---CC
Q 003020 712 DLYSE---------RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRF----EEATRIA----KQMRESGL---IS 771 (856)
Q Consensus 712 ~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~----~~~~~~~~---~p 771 (856)
+.|-. ....++|+..|.+..+.. ++...=.+++..+...|.. .+..++- ..+.++|. ..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~-~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIE-PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCC-ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 87742 224789999999988876 3333222333334444432 2333333 22223332 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 772 DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 772 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
+-..+.+++.+..-.|++++|.+..++|... .|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l--~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL--KPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCcch
Confidence 4455678889999999999999999999985 45544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.74 Score=45.31 Aligned_cols=228 Identities=18% Similarity=0.079 Sum_probs=159.4
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCChHhHHHHHHHHHhcCCHHHHH
Q 003020 542 GRNYDKACNLFDSMTSHGAV-PDKCSYNSLIQILAGADLPHMAKRYLRKMQEA-GLVSDCIPYCAVISSYMKLGQLEMAE 619 (856)
Q Consensus 542 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 619 (856)
.+....+...+......... .....+......+...+....+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555566666665554222 13466667777777888888888777776652 23345556667777777788888898
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 620 EVYKDMIRFNVEPDVVVYGVLIN-AFADVGNVKQAQSYFDAMESAGL--PPNAVIYNSLIKLYTKVGYLKEAQETYKLLR 696 (856)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 696 (856)
..+.........+ ......... .+...|+++.|...+.+...... ......+......+...++++++...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888888654332 222222333 68888999999999998866321 1234455555555778889999999999888
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 697 SLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 697 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
..........+..+...+...++++.|...+.......+.....+..+...+...+.++++...+.+..+..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 74321135677788888888899999999999999887766666777777777777899999999999887654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0047 Score=48.79 Aligned_cols=61 Identities=20% Similarity=0.191 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC---C-C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKG---D-A---NEFTYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
+++.+..+|...|++++|+..++++.+.. + . -..++..++.++...|++++|+++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666666666666666666655332 1 1 134667777777778888888877777765
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.021 Score=53.23 Aligned_cols=89 Identities=20% Similarity=0.282 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHc-----cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc----------------CCHHHHH
Q 003020 388 PPDTRTYNILIFLHAK-----NDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIR----------------RMVCEAE 446 (856)
Q Consensus 388 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------g~~~~A~ 446 (856)
..+..+|..++..|.+ .|.++-....+..|.+-|+..|..+|+.|+..+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4577888888888764 578899999999999999999999999999986432 2446699
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHHcCC
Q 003020 447 ELISEMDGGGLEIDEYTQSALTRMYIEAGM 476 (856)
Q Consensus 447 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 476 (856)
+++++|...|+.||..|+..+++.+.+.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 999999999999999999999999977664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.045 Score=53.90 Aligned_cols=151 Identities=9% Similarity=0.030 Sum_probs=88.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HH--HHHHHHHHHcCCHHH
Q 003020 647 VGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVY--TS--NCMIDLYSERSMVRQ 722 (856)
Q Consensus 647 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~--~~l~~~~~~~g~~~~ 722 (856)
.|+..+|...++++++. .|.|...+.-.-.+|.-.|+.+.-...++++... ..+|.. +| ..+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45666666666666654 4556666666666666666666666666665542 112221 22 222233446677777
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 723 AEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI---SDLLSYNNVLGLYAVDGRFKDVIGTFKDM 799 (856)
Q Consensus 723 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 799 (856)
|++..++..+.++.|..+-.++...+...|++.++.++..+-...=-. .-...|-+.+-.+...+.++.|+++|++=
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 777777777777777777777777777777777777765554322000 01123444555566667777777777653
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.17 Score=53.37 Aligned_cols=115 Identities=13% Similarity=0.072 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003020 684 YLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQ 763 (856)
Q Consensus 684 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 763 (856)
...+|.+.-++..+.+. .|......++.+..-.++++.|...|+++...+|....+|...+..+...|+.++|.+.+++
T Consensus 319 ~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 319 AAQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34566777777777553 56777777777777788899999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 764 MRESGLISDLLS-YNNVLGLYAVDGRFKDVIGTFKDMV 800 (856)
Q Consensus 764 ~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~ 800 (856)
+++..|.--... ....+..|+.. ..++|+.+|-+-.
T Consensus 398 alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 434 (458)
T PRK11906 398 SLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYKET 434 (458)
T ss_pred HhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhhcc
Confidence 988876532222 23333456654 4577777765533
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0056 Score=41.76 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003020 740 TYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVL 780 (856)
Q Consensus 740 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 780 (856)
++..++.+|...|++++|+++++++++..|. |+..|..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 4556666666666666666666666666665 656555554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.025 Score=51.22 Aligned_cols=72 Identities=17% Similarity=0.186 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCCCHHHHH
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMR-----ESGLISDLLSYN 777 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~ 777 (856)
....++..+...|++++|...++++....|.+...|..++.+|...|+..+|+++|+++. +.|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 345667778899999999999999999999999999999999999999999999999885 468888876543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.031 Score=58.48 Aligned_cols=66 Identities=14% Similarity=0.020 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003020 666 PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDV----YTSNCMIDLYSERSMVRQAEEIFEIMKKK 733 (856)
Q Consensus 666 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 733 (856)
|.+...++.++.+|...|++++|+..|++.++.. |+. ..|..+..+|...|+.++|++.++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556778888888888888888888888877743 442 34777788888888888888888888765
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.028 Score=57.38 Aligned_cols=122 Identities=12% Similarity=0.062 Sum_probs=87.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 003020 674 SLIKLYTKVGYLKEAQETYKLLRSL-EASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG 752 (856)
Q Consensus 674 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 752 (856)
.-++.|.+.|++..|...|+++... .. .+.-+.++..... ..-..++.+|+.+|.+.+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~--------------~~~~~~ee~~~~~-------~~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEY--------------RRSFDEEEQKKAE-------ALKLACHLNLAACYLKLK 271 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhc--------------cccCCHHHHHHHH-------HHHHHHhhHHHHHHHhhh
Confidence 4466677777777777777776551 10 0000011111111 112235778999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003020 753 RFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLM 819 (856)
Q Consensus 753 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 819 (856)
++.+|++..++.++.++. ++....--+.+|...|+++.|...|+++++ +.|++.....=+..|.
T Consensus 272 ~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLK 335 (397)
T ss_pred hHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHH
Confidence 999999999999999987 999999999999999999999999999999 6898876544443333
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.42 E-value=1.4 Score=45.43 Aligned_cols=101 Identities=13% Similarity=0.081 Sum_probs=45.6
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCCh
Q 003020 398 IFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGML 477 (856)
Q Consensus 398 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 477 (856)
|.-+...|+...|.++-.+.. -|+..-|...+.+++..+++++-.++-.. . -.+.-|-.++.+|.+.|..
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHHHHHCCCH
Confidence 333444455444444443332 14555555555555555555544443221 0 1223444445555555555
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHH
Q 003020 478 EKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERA 517 (856)
Q Consensus 478 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 517 (856)
.+|..+..++. ...-+..|.+.|.+.+|.+.
T Consensus 254 ~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 254 KEASKYIPKIP---------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHH
Confidence 55544444421 13334555555555555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.16 Score=50.70 Aligned_cols=226 Identities=13% Similarity=0.009 Sum_probs=128.7
Q ss_pred ccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChHHHHHHHHH----HHHcC-CCCChHhHHHHHHHHHhcC
Q 003020 541 MGRNYDKACNLFDSMTSH--GAVPDKCSYNSLIQILAGADLPHMAKRYLRK----MQEAG-LVSDCIPYCAVISSYMKLG 613 (856)
Q Consensus 541 ~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~~g 613 (856)
...+.++|+..+.+.+.+ ....-..++..+..+.+..|.+++++..--. +.+.. -..-...|..+..++.+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554433 0111123444555566666666555433211 11110 0001223555556666666
Q ss_pred CHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC
Q 003020 614 QLEMAEEVYKDMIRF-NVEP---DVVVYGVLINAFADVGNVKQAQSYFDAMESAG-----LPPNAVIYNSLIKLYTKVGY 684 (856)
Q Consensus 614 ~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~ 684 (856)
++.+++.+-..-... |..| ......++..++...+.++++++.|+...+.. ....-.++..|...|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 666666655544432 1111 11334456677777788899999998886531 11223578888999999999
Q ss_pred HHHHHHHHHHHHh----CCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHhCC--CC----CHHHHHHHHHHHH
Q 003020 685 LKEAQETYKLLRS----LEASPDVYTSN-----CMIDLYSERSMVRQAEEIFEIMKKKG--DA----NEFTYAMMLIMYK 749 (856)
Q Consensus 685 ~~~A~~~~~~~~~----~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~--~~----~~~~~~~l~~~~~ 749 (856)
+++|+-+..+..+ .++..-..-|. .|.-++...|...+|.+..++..+.. .. .......+++.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 9998877655543 33322222233 33345667788888888877766543 22 3345567888999
Q ss_pred HcCCHHHHHHHHHHHHH
Q 003020 750 RNGRFEEATRIAKQMRE 766 (856)
Q Consensus 750 ~~g~~~~A~~~~~~~~~ 766 (856)
..|+.+.|..-|+++..
T Consensus 258 ~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQAMG 274 (518)
T ss_pred hcccHhHHHHHHHHHHH
Confidence 99999999888887754
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.3 Score=45.28 Aligned_cols=93 Identities=13% Similarity=-0.073 Sum_probs=69.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCC
Q 003020 164 RSIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGG 243 (856)
Q Consensus 164 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 243 (856)
.+.++...|-++.|+--|..++... |.-+.+||.+.--+...|+++.|.+.|+...+.++. ...+...-+-++.-.|
T Consensus 71 RGvlYDSlGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~g 147 (297)
T COG4785 71 RGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGG 147 (297)
T ss_pred hcchhhhhhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecC
Confidence 3455666778888888898888764 344577898888888999999999999999998766 3344444444555678
Q ss_pred CHHHHHHHHHHHHhCC
Q 003020 244 LKEEAVCWLERMNEGG 259 (856)
Q Consensus 244 ~~~~A~~~~~~~~~~~ 259 (856)
+++-|.+-|-+.-+..
T Consensus 148 R~~LAq~d~~~fYQ~D 163 (297)
T COG4785 148 RYKLAQDDLLAFYQDD 163 (297)
T ss_pred chHhhHHHHHHHHhcC
Confidence 9999988777776653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.20 E-value=1.2 Score=50.00 Aligned_cols=180 Identities=17% Similarity=0.163 Sum_probs=98.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcCh--hhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 003020 196 HYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPIN--STYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQM 273 (856)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 273 (856)
....-+..+.+...+.-|+.+-.. .+..++. ......++-+.+.|++++|...|-+.+.. ++|.. ++.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHH
Confidence 344566777777777777776543 2222221 23344445567788888888888776643 23322 2233
Q ss_pred HHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003020 274 YKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIV 353 (856)
Q Consensus 274 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 353 (856)
|....++..--.+++.+.. ..-.+...-..|+.+|.+.++.+.-.++.+... .|..
T Consensus 407 fLdaq~IknLt~YLe~L~~-----------------------~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~ 462 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHK-----------------------KGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW 462 (933)
T ss_pred hcCHHHHHHHHHHHHHHHH-----------------------cccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce
Confidence 3333333333334444321 112234455678888888888877666655443 2211
Q ss_pred CCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 003020 354 PTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMK 418 (856)
Q Consensus 354 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 418 (856)
..-....+..+.+.+-+++|..+-.+... +......+ +-..+++++|++.+..+.
T Consensus 463 --~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 463 --FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred --eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 11234455666666777777666655442 33333333 334677888888887764
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0069 Score=38.42 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=22.5
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003020 761 AKQMRESGLISDLLSYNNVLGLYAVDGRFKDVI 793 (856)
Q Consensus 761 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 793 (856)
|+++++..|. ++.+|+.++.+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 5666677766 7777777777777777777764
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.13 Score=49.99 Aligned_cols=96 Identities=18% Similarity=0.154 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANE---FTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS--DLLSYNNVL 780 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~ 780 (856)
.|+.-++.+ ..|++..|...|...++..|.+. .++.-|+.++..+|++++|..+|..+.+.-|.. -+..+.-|+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 465555433 55668888888888777775543 356667788888888888888888777765441 346777778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 003020 781 GLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 781 ~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
.+..+.|+.++|..+|++.++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8888888888888888887774
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.8 Score=43.51 Aligned_cols=203 Identities=13% Similarity=0.140 Sum_probs=107.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003020 567 YNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFAD 646 (856)
Q Consensus 567 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 646 (856)
|.....+|....++++|...+.+..+. ...+... +-....++.|.-+.+++.+. .--+..|+--...|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrsl-------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSL-------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccH-------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444445666677777777766665531 1111111 11123345555555555542 2223355555666777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHHcCCHH
Q 003020 647 VGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSL---EA--SPDVYTSNCMIDLYSERSMVR 721 (856)
Q Consensus 647 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~p~~~~~~~l~~~~~~~g~~~ 721 (856)
+|.++.|-..+++.-+. ....++++|+++|++.... +- ..-...+....+.+.+...++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 77777766666655331 1233445555555544331 10 011224455556666777777
Q ss_pred HHHHHHHHHHhCC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHH
Q 003020 722 QAEEIFEIMKKKG------DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI---SDLLSYNNVLGLYAVDGRFKDV 792 (856)
Q Consensus 722 ~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A 792 (856)
+|-..+.+-.... +.-...+...+-.+....++..|.+.++..-..+-. -+..+...|+.+| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 7766655432211 222234566666777777888888888876554211 1446677777765 45676666
Q ss_pred HHHH
Q 003020 793 IGTF 796 (856)
Q Consensus 793 ~~~~ 796 (856)
..++
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 5443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.071 Score=48.18 Aligned_cols=99 Identities=11% Similarity=-0.013 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--
Q 003020 721 RQAEEIFEIMKKKGDANEFTYAMMLIMYKRN----------GRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGR-- 788 (856)
Q Consensus 721 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-- 788 (856)
+.|.+.++.....+|.|...++..+.++... .-+++|+.-|++++..+|. ...++..++.+|...+.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhc
Confidence 4444455544444555555554444443322 1234455555555555554 44666666666654443
Q ss_pred ---------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003020 789 ---------FKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 789 ---------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G 822 (856)
+++|...|+++.+ ..|+..+|+.-+....++-
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~kap 127 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAKAP 127 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHTHH
T ss_pred CChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHhhH
Confidence 3445555555554 3677776666655554433
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.5 Score=51.91 Aligned_cols=117 Identities=16% Similarity=0.062 Sum_probs=78.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHcCCHHH
Q 003020 682 VGYLKEAQETYKLLRSLEASPDVYTSNC-MIDLYSERSMVRQAEEIFEIMKKKG----DANEFTYAMMLIMYKRNGRFEE 756 (856)
Q Consensus 682 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 756 (856)
....+.|.++++.+.+. -|+...|.. -.+.+...|+.++|++.++++.... ......+.-+++.+.-..+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34567777888777763 356554432 3455667788888888888765422 2234456677888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCH-------HHHHHHHHHHHH
Q 003020 757 ATRIAKQMRESGLISDLLSY-NNVLGLYAVDGRF-------KDVIGTFKDMVN 801 (856)
Q Consensus 757 A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~-------~~A~~~~~~~~~ 801 (856)
|...+.++.+..-. +...| +..+.++...|+. ++|.+++++...
T Consensus 324 A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88888888876543 33333 4445666677877 788888877654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.28 Score=53.82 Aligned_cols=148 Identities=15% Similarity=0.108 Sum_probs=99.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHH----HcCCHHHHHHHHHHHHhCCCCCHHHHHH
Q 003020 674 SLIKLYTKVGYLKEAQETYKLLRSL-EASPDV-----YTSNCMIDLYS----ERSMVRQAEEIFEIMKKKGDANEFTYAM 743 (856)
Q Consensus 674 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-----~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 743 (856)
.++....-.|+-+.+++.+....+. ++.-.. ..|..++..++ .....+.|.++++.+....|........
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 3444445556666666666655542 221111 12222232222 3567899999999999998988888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH
Q 003020 744 MLIMYKRNGRFEEATRIAKQMRESG---LISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLG-AVLM 819 (856)
Q Consensus 744 l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~-~~~~ 819 (856)
-++.+...|+.++|++.++++.+.. +.....++.-+++++.-.++|++|...|.++.+.. ..+..+|.-+. .++.
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHH
Confidence 8999999999999999999877532 11234677889999999999999999999999853 33444444333 3334
Q ss_pred HcC
Q 003020 820 KCG 822 (856)
Q Consensus 820 ~~G 822 (856)
..|
T Consensus 352 ~l~ 354 (468)
T PF10300_consen 352 MLG 354 (468)
T ss_pred hhc
Confidence 444
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=2.1 Score=41.56 Aligned_cols=53 Identities=23% Similarity=0.175 Sum_probs=25.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHH
Q 003020 710 MIDLYSERSMVRQAEEIFEIMKKKGDANE---FTYAMMLIMYKRNGRFEEATRIAK 762 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~ 762 (856)
+.+-|.+.|.+-.|..-++.|.+..+... ..+..|..+|...|-.++|.+.-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 34445555555555555555555443222 233344455555555555555444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.029 Score=38.22 Aligned_cols=41 Identities=7% Similarity=0.035 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLI 746 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 746 (856)
++..+...|...|++++|+++++++++..|.|+..|..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 46678888888999999999999999888888888877654
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.63 E-value=2.2 Score=41.20 Aligned_cols=120 Identities=19% Similarity=0.175 Sum_probs=55.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCC---hHhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCC--CCHHHHHHHHHHHHhcC
Q 003020 577 ADLPHMAKRYLRKMQEAGLVSD---CIPYCAVISSYMKLGQLEMAEEVYKDMIR---FNVE--PDVVVYGVLINAFADVG 648 (856)
Q Consensus 577 ~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~--~~~~~~~~l~~~~~~~g 648 (856)
...+++|+.-|.+.++...... -.....++..+.+.|++++.+..|.+++. ..+. -+..+.|++++......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3456666666666655432211 22234445556666666666666666542 1111 12334555555444444
Q ss_pred CHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 649 NVKQAQSYFDAMESA-----GLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLR 696 (856)
Q Consensus 649 ~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 696 (856)
+.+--..+|+.-++. +-..--.|-+-++..|...|.+..-.++++++.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 444444444433221 000111222345555555555555555555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.32 Score=47.47 Aligned_cols=93 Identities=14% Similarity=0.069 Sum_probs=41.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHHcCCH
Q 003020 646 DVGNVKQAQSYFDAMESAGLPP---NAVIYNSLIKLYTKVGYLKEAQETYKLLRS-LEASPD-VYTSNCMIDLYSERSMV 720 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~ 720 (856)
+.|++.+|...|...++.. |- ....+..|+.++...|++++|..+|..+.+ .+-.|. +..+-.|..+..+.|+.
T Consensus 153 ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 3444555555555555431 11 112334455555555555555555544444 111121 23333444444455555
Q ss_pred HHHHHHHHHHHhCCCCCHH
Q 003020 721 RQAEEIFEIMKKKGDANEF 739 (856)
Q Consensus 721 ~~A~~~~~~~~~~~~~~~~ 739 (856)
++|...|+++.+..|....
T Consensus 232 d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 232 DEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHHHHHCCCCHH
Confidence 5555555555554444433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.58 E-value=1.5 Score=43.29 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=76.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003020 643 AFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQ 722 (856)
Q Consensus 643 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 722 (856)
.....|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+-...-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4456677777777777766653 334455556666777777777777776654321111111111122333334333333
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHH
Q 003020 723 AEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRES--GLISDLLSYNNVLGLYAVDGRFK 790 (856)
Q Consensus 723 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~ 790 (856)
...+-.++- .+|.|...-..++..+...|+.++|.+.+-.+++. +.. |...-..++..+..-|..+
T Consensus 222 ~~~l~~~~a-adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 222 IQDLQRRLA-ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 333333332 23666666666777777777777776666655544 232 4445555555555555333
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.36 Score=40.83 Aligned_cols=92 Identities=16% Similarity=0.023 Sum_probs=74.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCcChh---hHHHHHHHHH
Q 003020 165 SIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVK-GIVPINS---TYGTLIDVCS 240 (856)
Q Consensus 165 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~---~~~~l~~~~~ 240 (856)
+..+.+.|+++.|++.|.+++.. .+.+..+||.-..++.-+|+.++|..-+++.++. |.. ... +|..-...|.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHH
Confidence 45577889999999999998876 3677889999999999999999999999998874 322 222 4555566788
Q ss_pred cCCCHHHHHHHHHHHHhCC
Q 003020 241 KGGLKEEAVCWLERMNEGG 259 (856)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~ 259 (856)
..|+-+.|+.-|+.+-+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 8999999999999998877
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.18 Score=46.11 Aligned_cols=94 Identities=17% Similarity=0.020 Sum_probs=74.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 003020 677 KLYTKVGYLKEAQETYKLLRSLEASPD----VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG 752 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 752 (856)
+-+...|++++|..-|..+++.-.+.. ...|..-..++.+.+.++.|++-..++++.+|....++..-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 445678899999999988887432211 3356666667788899999999999999988888888888888899999
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 003020 753 RFEEATRIAKQMRESGLI 770 (856)
Q Consensus 753 ~~~~A~~~~~~~~~~~~~ 770 (856)
.+++|+.-|+++++..|.
T Consensus 183 k~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPS 200 (271)
T ss_pred hHHHHHHHHHHHHHhCcc
Confidence 999999999999998766
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.48 E-value=2.4 Score=40.41 Aligned_cols=205 Identities=13% Similarity=0.077 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 003020 195 IHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMY 274 (856)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 274 (856)
..|..-..+|....+++.|...+.+..+ +...|..-|+ . ...++.|.-+.+++.+. .--+..++.....|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 4455556677777888888888877664 1221222222 1 12344455555555443 11223455555667
Q ss_pred HhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 003020 275 KKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLRE---G 351 (856)
Q Consensus 275 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g 351 (856)
..+|..+.|-..+++... ....-++++|+++|++...- +
T Consensus 102 ~E~GspdtAAmaleKAak--------------------------------------~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK--------------------------------------ALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHhCCcchHHHHHHHHHH--------------------------------------HhhcCCHHHHHHHHHHHHHHHhcc
Confidence 777777777766666532 11334556666666654321 1
Q ss_pred C--CCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCC----CCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcC---
Q 003020 352 I--VPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELH----CPPDT-RTYNILIFLHAKNDKISMASRYFWKMKEAN--- 421 (856)
Q Consensus 352 ~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--- 421 (856)
- +.-...+....+.+.+...+++|-..+.+-.... --++. ..|-+.|-.|.-..++..|.+.++.--+.+
T Consensus 144 dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~ 223 (308)
T KOG1585|consen 144 DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL 223 (308)
T ss_pred chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc
Confidence 0 0011123333444555555555544443322110 01111 234444445555566666666666633221
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 003020 422 LEPDIVSYRTLLYAYSIRRMVCEAEEL 448 (856)
Q Consensus 422 ~~~~~~~~~~ll~~~~~~g~~~~A~~~ 448 (856)
-+.+..+...|+.+| ..|+.+++..+
T Consensus 224 ~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 224 KSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred ChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 122444555566555 34555544443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.45 E-value=2.7 Score=40.78 Aligned_cols=55 Identities=15% Similarity=0.065 Sum_probs=27.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 744 MLIMYKRNGRFEEATRIAKQMRESGLISD--LLSYNNVLGLYAVDGRFKDVIGTFKD 798 (856)
Q Consensus 744 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 798 (856)
+++-|.+.|.+..|..-++++++.-+... ...+..+..+|...|-.++|.+.-+-
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 34455555555555555555555532211 13344444555555555555554333
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.42 Score=47.95 Aligned_cols=226 Identities=10% Similarity=0.077 Sum_probs=140.9
Q ss_pred cCCChHHHHHHHHHHHHcC--CCCChHhHHHHHHHHHhcCCHHHHHHH----HHHHHHCC-CCCCHHHHHHHHHHHHhcC
Q 003020 576 GADLPHMAKRYLRKMQEAG--LVSDCIPYCAVISSYMKLGQLEMAEEV----YKDMIRFN-VEPDVVVYGVLINAFADVG 648 (856)
Q Consensus 576 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~~-~~~~~~~~~~l~~~~~~~g 648 (856)
...+.+.|+..+.+.+..- ...-..++..+..+.+..|.+++++.. .+...+.. ...-...|..+.+++.+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666665544321 011223456667777788877776543 22222211 0011235556666666666
Q ss_pred CHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C--CC--CHHHHHHHHHHHHHcCC
Q 003020 649 NVKQAQSYFDAMESA-GLPP---NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLE-A--SP--DVYTSNCMIDLYSERSM 719 (856)
Q Consensus 649 ~~~~A~~~~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~--~p--~~~~~~~l~~~~~~~g~ 719 (856)
++.+++.+-..-... |..| .-....++..++...+.++++++.|+...+.. - .| ....+..|...|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 666666655544331 2122 11334457778888889999999999877621 1 11 23467889999999999
Q ss_pred HHHHHHHHHHHHhCC----CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHH
Q 003020 720 VRQAEEIFEIMKKKG----DANE------FTYAMMLIMYKRNGRFEEATRIAKQMRES----GLIS-DLLSYNNVLGLYA 784 (856)
Q Consensus 720 ~~~A~~~~~~~~~~~----~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~ 784 (856)
+++|.-+..++.+.- -.|. .+...|.-++...|+.-+|.+.-+++.+. |-.+ -..+...++++|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 999998887665432 1222 24567788899999999998888887654 3221 2245678899999
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003020 785 VDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 785 ~~g~~~~A~~~~~~~~~ 801 (856)
..|+.+.|..-|+.+..
T Consensus 258 ~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQAMG 274 (518)
T ss_pred hcccHhHHHHHHHHHHH
Confidence 99999999888887544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.37 E-value=2 Score=42.49 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=94.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003020 608 SYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKE 687 (856)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 687 (856)
.....|++.+|...|......... +...-..++.+|...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345678888888888888876433 4556667788888888888888888877543212222233334455555555555
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 688 AQETYKLLRSLEASP-DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG--DANEFTYAMMLIMYKRNGRFEEATR 759 (856)
Q Consensus 688 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 759 (856)
...+-+..-. .| |...-..+...+...|+.++|.+.+=.+++.+ -.|..+-..|+..+.-.|..+.+..
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHH
Confidence 4444444433 24 56666677888888899999988877777665 4555666666666666664444333
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.02 Score=36.32 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=29.0
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 727 FEIMKKKGDANEFTYAMMLIMYKRNGRFEEATR 759 (856)
Q Consensus 727 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 759 (856)
|+++++..|.|+.+|+.++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 567788889999999999999999999999863
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.33 E-value=4.1 Score=42.05 Aligned_cols=109 Identities=16% Similarity=0.033 Sum_probs=69.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhh
Q 003020 428 SYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGE 507 (856)
Q Consensus 428 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 507 (856)
+.+..+.-+...|+...|.++-.+.. .||..-|...+.+++..+++++-..+... ..++-.|...+..+.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLK 249 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHH
Confidence 44445556666777777766655542 35666777777777777777766554321 3345667777777777
Q ss_pred cCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003020 508 RGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDS 554 (856)
Q Consensus 508 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 554 (856)
.|+..+|.....++. +..-+..|.+.|++.+|.+.--+
T Consensus 250 ~~~~~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP---------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777665522 24556677777777777665433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.20 E-value=7.3 Score=44.20 Aligned_cols=152 Identities=16% Similarity=0.129 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003020 322 YTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTV--TFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIF 399 (856)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 399 (856)
.....-+....+...++.|+.+-+.- +..++.. .......-+.+.|++++|...+-+.+.. +.| ..+|.
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 34455677778888888888776543 2222221 2333345556789999999888777632 223 23455
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-CCCHhhHHHHHHHHHHcCChH
Q 003020 400 LHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGL-EIDEYTQSALTRMYIEAGMLE 478 (856)
Q Consensus 400 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~ 478 (856)
-|....+..+-..+++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+.-. .|. ..| ....+..+.+.+-.+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLD 480 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHH
Confidence 56666677777788888888886 455666788999999999988887776654 221 112 233455566666666
Q ss_pred HHHHHHHHH
Q 003020 479 KSWLWFRRF 487 (856)
Q Consensus 479 ~a~~~~~~~ 487 (856)
+|..+-.+.
T Consensus 481 ~a~~LA~k~ 489 (933)
T KOG2114|consen 481 EAELLATKF 489 (933)
T ss_pred HHHHHHHHh
Confidence 665544433
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.26 Score=45.11 Aligned_cols=96 Identities=8% Similarity=0.094 Sum_probs=80.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003020 711 IDLYSERSMVRQAEEIFEIMKKKGDANE-----FTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAV 785 (856)
Q Consensus 711 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 785 (856)
+.-+...|++++|..-|..++..-|+.+ ..|..-+.++.+.+.++.|+.-..++++++|. ...+..--+.+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 3456789999999999999998876543 35667778889999999999999999999887 66667777889999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 786 DGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 786 ~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
..++++|++=|+++++. .|...
T Consensus 181 ~ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred hhhHHHHHHHHHHHHHh--CcchH
Confidence 99999999999999984 66554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.09 E-value=7.7 Score=43.88 Aligned_cols=247 Identities=15% Similarity=0.073 Sum_probs=144.3
Q ss_pred HccCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 003020 540 GMGRNYDKACNLFDSMTS-------HGAVPDKCSYNSLIQILAGAD-----LPHMAKRYLRKMQEAGLVSDCIPYCAVIS 607 (856)
Q Consensus 540 ~~~g~~~~A~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 607 (856)
....+.+.|+..|+.+.+ .+ .......+..+|.+.. +.+.|..++.+.-+.|. |+.......+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~ 335 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLY 335 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 355677777777777766 44 2334555666666643 56678888888887763 33333322222
Q ss_pred HHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003020 608 SYMK-LGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFA----DVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKV 682 (856)
Q Consensus 608 ~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 682 (856)
.... ..+...|.++|..+.+.|. +.++-.+..+|. ...+...|..++.+..+.| .|...--...+..+..
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV- 410 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-
Confidence 2222 2457889999999988773 222222332222 2347888999999998887 3333222333334444
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HH----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc----
Q 003020 683 GYLKEAQETYKLLRSLEASPDVYTSNCMIDLY---SE----RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN---- 751 (856)
Q Consensus 683 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 751 (856)
+.++.+.-.+..+.+.+.+.....-..++... .. ..+...+...+.+.... .+......|...|...
T Consensus 411 ~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~~~a~~~lgd~y~~g~g~~ 488 (552)
T KOG1550|consen 411 GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ--GNADAILKLGDYYYYGLGTG 488 (552)
T ss_pred ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhc--cCHHHHhhhcceeeecCCCC
Confidence 77888877777776655422111111111111 11 22556677777766654 4556666777766544
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 003020 752 GRFEEATRIAKQMRESGLISDLLSYNNVLGLYAV----DGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 752 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 802 (856)
.+++.|...|.+..+.+ .....+++..+.. .. +..|.+++++..+.
T Consensus 489 ~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 489 RDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEE 538 (552)
T ss_pred CChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhc
Confidence 35888888888888775 4555566655542 22 67788888877664
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.97 E-value=2 Score=36.62 Aligned_cols=64 Identities=23% Similarity=0.335 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 707 SNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 707 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
....++.+..+|+-+.-.++++.+.+.+.+++.....++.+|.+.|+..++.++++++-+.|.+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3444555666666666666666666555666666666666666666666666666666666643
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.96 E-value=2.1 Score=45.53 Aligned_cols=143 Identities=12% Similarity=0.131 Sum_probs=77.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003020 611 KLGQLEMAEEVYKDMIRFNVEPDVV-VYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQ 689 (856)
Q Consensus 611 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 689 (856)
+..++..-++.-+++++. .||-. .|..| +--......+|..++++..+.|- ..+..- ......|..-
T Consensus 180 RERnp~aRIkaA~eALei--~pdCAdAYILL--AEEeA~Ti~Eae~l~rqAvkAgE----~~lg~s-~~~~~~g~~~--- 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEI--NPDCADAYILL--AEEEASTIVEAEELLRQAVKAGE----ASLGKS-QFLQHHGHFW--- 247 (539)
T ss_pred hcCCHHHHHHHHHHHHHh--hhhhhHHHhhc--ccccccCHHHHHHHHHHHHHHHH----Hhhchh-hhhhcccchh---
Confidence 444555555565666553 34433 33222 22234557788888887766541 111000 0001112111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 690 ETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA--NEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 690 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
+........|-...-..+..++.+.|+.++|++.++++.+..|. +..+...|+.++...+.+.++..++.+-.+.
T Consensus 248 ---e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 248 ---EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred ---hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11111112222333345666667788888888888888776544 3446778888888888888888888887654
Q ss_pred C
Q 003020 768 G 768 (856)
Q Consensus 768 ~ 768 (856)
.
T Consensus 325 ~ 325 (539)
T PF04184_consen 325 S 325 (539)
T ss_pred c
Confidence 3
|
The molecular function of this protein is uncertain. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.68 Score=46.01 Aligned_cols=151 Identities=14% Similarity=0.017 Sum_probs=88.1
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCH
Q 003020 575 AGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVV----VYGVLINAFADVGNV 650 (856)
Q Consensus 575 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~ 650 (856)
...|++.+|-..++++++. ++.|...+.-.-++|.-.|+.+.-...++++... ..+|.. .-..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3466667777777777664 4556666666667777777777777777777643 123332 223334445567777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHHcCCHHHHHHH
Q 003020 651 KQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEAS-PD---VYTSNCMIDLYSERSMVRQAEEI 726 (856)
Q Consensus 651 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~---~~~~~~l~~~~~~~g~~~~A~~~ 726 (856)
++|.+.-++..+.+ +.|.-.-.++...+...|++.++.++..+-... .+ .+ ...|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 77777777776654 445555566666677777777777765443220 00 00 11111222334455777777777
Q ss_pred HHH
Q 003020 727 FEI 729 (856)
Q Consensus 727 ~~~ 729 (856)
|++
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 764
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.72 E-value=1.7 Score=38.19 Aligned_cols=52 Identities=23% Similarity=0.273 Sum_probs=25.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 645 ADVGNVKQAQSYFDAMESAGLPP---NAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
.+.|++++|.+.|+.+... .|. ....--.++.+|.+.|++++|...+++.++
T Consensus 21 l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3445555555555555443 111 123334445555555555555555555555
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.61 E-value=2.6 Score=36.06 Aligned_cols=139 Identities=14% Similarity=0.158 Sum_probs=80.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 645 ADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS-LEASPDVYTSNCMIDLYSERSMVRQA 723 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A 723 (856)
.-.|..++..++..+.... .+..-+|.++--....-+-+-..++++.+-+ .++.+- .-...++.+|...|..
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~~--- 85 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNKL--- 85 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcch---
Confidence 3467777888888777663 3455555555444444444444444444332 111111 0112344445444432
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003020 724 EEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAA 803 (856)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 803 (856)
.......+..+..+|+-+.-.++++.+.+. -.+++.....++.+|.+.|+..++-+++.++-+.|
T Consensus 86 --------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 86 --------------SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred --------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 233445567788899999999999998863 34689999999999999999999999999999988
Q ss_pred CC
Q 003020 804 IQ 805 (856)
Q Consensus 804 ~~ 805 (856)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 64
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.55 E-value=13 Score=44.02 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=12.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 742 AMMLIMYKRNGRFEEATRIAKQMR 765 (856)
Q Consensus 742 ~~l~~~~~~~g~~~~A~~~~~~~~ 765 (856)
..|+.-+..+++.-+|-++..+..
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh
Confidence 344455555555555555554444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.5 Score=51.12 Aligned_cols=154 Identities=14% Similarity=0.149 Sum_probs=87.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHH
Q 003020 207 ARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEF 286 (856)
Q Consensus 207 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 286 (856)
.|+++++.++...-.-. +.-...-.+.+++.+-+.|.++.|+++-..-. .-.....+.|+++.|.++
T Consensus 274 ~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEI 340 (443)
T ss_dssp TT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHH
T ss_pred cCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHH
Confidence 67777766665411100 00123346777777888888888877644321 123345567888888776
Q ss_pred HHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 003020 287 FKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIY 366 (856)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 366 (856)
.++.. +...|..|.....++|+++-|.+.|.+... |..|+-.|
T Consensus 341 a~~~~----------------------------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy 383 (443)
T PF04053_consen 341 AKELD----------------------------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLY 383 (443)
T ss_dssp CCCCS----------------------------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHH
T ss_pred HHhcC----------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHH
Confidence 64332 456788888888888888888888877532 45555566
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 003020 367 GNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWK 416 (856)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 416 (856)
.-.|+.+...++.+.....| -+|....++.-.|++++..+++.+
T Consensus 384 ~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 384 SSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 67777777777777766554 133444444555666666666544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.45 E-value=2.4 Score=37.77 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=16.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003020 606 ISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFAD 646 (856)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 646 (856)
+..+...+.+......++.+...+ ..+....+.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 333333344444444444444333 1233344444444443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.43 E-value=11 Score=42.39 Aligned_cols=111 Identities=13% Similarity=0.117 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYK 749 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 749 (856)
.+.+--+.-+...|+..+|.++-++. .+ ||-..|-.-+.++...+++++-+++-++.. .|.-|.-...+|.
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~F---ki-pdKr~~wLk~~aLa~~~kweeLekfAkskk-----sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDF---KI-PDKRLWWLKLTALADIKKWEELEKFAKSKK-----SPIGYLPFVEACL 755 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhc---CC-cchhhHHHHHHHHHhhhhHHHHHHHHhccC-----CCCCchhHHHHHH
Confidence 34555566677889989998876553 34 787777777888999999988777765543 2556777888999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 750 RNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKD 798 (856)
Q Consensus 750 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 798 (856)
++|+.++|.+++-+.-.. . ....+|.+.|++.+|.++--+
T Consensus 756 ~~~n~~EA~KYiprv~~l------~---ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL------Q---EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccCCh------H---HHHHHHHHhccHHHHHHHHHH
Confidence 999999999988765321 1 567889999999998776544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.35 E-value=2.7 Score=45.56 Aligned_cols=156 Identities=17% Similarity=0.153 Sum_probs=85.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003020 610 MKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQ 689 (856)
Q Consensus 610 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 689 (856)
.-.++++++.++.+.-.-. +..+....+.++..+.+.|.++.|+.+... +. .-.+...+.|+++.|.
T Consensus 272 v~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIAL 338 (443)
T ss_dssp HHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHH
T ss_pred HHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHH
Confidence 3456777766665411100 111244566777777777777777765432 21 2234456677777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003020 690 ETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 690 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 769 (856)
++.+ ..++...|..|.+...++|+++-|++.+++... +..|+..|.-.|+.+.-.++.+.+.+.|-
T Consensus 339 ~~a~------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 339 EIAK------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHCC------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHH------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 6622 235666788888888888888888877777652 55667777777777777777666665542
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 770 ISDLLSYNNVLGLYAVDGRFKDVIGTFKD 798 (856)
Q Consensus 770 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 798 (856)
++....++.-.|+.++.++++.+
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333444555666665555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=8.3 Score=40.60 Aligned_cols=37 Identities=8% Similarity=0.073 Sum_probs=21.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHH
Q 003020 784 AVDGRFKDVIGTFKDMVNAAIQPDDFT--FKSLGAVLMK 820 (856)
Q Consensus 784 ~~~g~~~~A~~~~~~~~~~g~~p~~~~--~~~l~~~~~~ 820 (856)
....++..|+++|+++.+-+-..+++| ...-+.++.+
T Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (831)
T PRK15180 787 MHLRDYTQALQYWQRLEKVNGPTEPVTRQISTCITALQK 825 (831)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHhh
Confidence 455678899999998877432333333 4444444443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.11 Score=32.78 Aligned_cols=27 Identities=15% Similarity=0.393 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 775 SYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 775 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+|..++.+|...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.19 E-value=7.3 Score=39.60 Aligned_cols=62 Identities=19% Similarity=0.036 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCChH---HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003020 566 SYNSLIQILAGADLPH---MAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRF 628 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 628 (856)
++..++.++...+..+ +|..+++.+.... +..+.++..-+..+.+.++.+++.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3444555555554443 2333333333221 222333434444444455566666666666543
|
It is also involved in sporulation []. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=94.13 E-value=11 Score=43.37 Aligned_cols=88 Identities=8% Similarity=0.065 Sum_probs=37.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCChHhHHHHHHHHHhc--
Q 003020 536 VKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGL-VSDCIPYCAVISSYMKL-- 612 (856)
Q Consensus 536 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-- 612 (856)
..++.-.|.++.|++.+-+. .+...+.+.+...+..+ |-+......-..++.... .|...-+..||..|.+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 34555678889888887761 12233444444433322 211111111122221110 01114466777777663
Q ss_pred -CCHHHHHHHHHHHHHC
Q 003020 613 -GQLEMAEEVYKDMIRF 628 (856)
Q Consensus 613 -g~~~~A~~~~~~~~~~ 628 (856)
.++.+|.+.|--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 5778888887766543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.57 Score=46.50 Aligned_cols=79 Identities=15% Similarity=0.108 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRE-----SGLISDLLSYNN 778 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~ 778 (856)
..++..++..+...|+++.+.+.++++....|.+...|..++.+|.+.|+...|+..|+++.+ .|+.|.+.+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345556666677777777777777777777777777777777777777777777777766654 455555555544
Q ss_pred HHHH
Q 003020 779 VLGL 782 (856)
Q Consensus 779 l~~~ 782 (856)
+..+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.59 Score=46.43 Aligned_cols=81 Identities=16% Similarity=0.206 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 003020 739 FTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN-----AAIQPDDFTFKS 813 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~ 813 (856)
.++..++..+...|+++.+...++++++..|- +...|..++.+|.+.|+...|+..|+++.+ .|+.|.......
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35667788888889999999999999998887 888899999999999999999999888765 688898888777
Q ss_pred HHHHHHH
Q 003020 814 LGAVLMK 820 (856)
Q Consensus 814 l~~~~~~ 820 (856)
....+..
T Consensus 233 y~~~~~~ 239 (280)
T COG3629 233 YEEILRQ 239 (280)
T ss_pred HHHHhcc
Confidence 7777433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.26 Score=48.85 Aligned_cols=95 Identities=16% Similarity=0.081 Sum_probs=50.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 003020 641 INAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMV 720 (856)
Q Consensus 641 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 720 (856)
.+-|.++|++++|+.+|...+... +-|++++..-..+|.+..++..|..-....+..+- .-...|..-+.+-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhH
Confidence 445666666666666666665542 33666666666666666666666555554444210 1122333334444445555
Q ss_pred HHHHHHHHHHHhCCCCC
Q 003020 721 RQAEEIFEIMKKKGDAN 737 (856)
Q Consensus 721 ~~A~~~~~~~~~~~~~~ 737 (856)
.+|.+-++..++..|.+
T Consensus 182 ~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHhHHHHHhhCccc
Confidence 55555555555555443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.11 Score=33.35 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 775 SYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 775 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+|..|+.+|.+.|+|++|+++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467888888888888888888888654
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.91 E-value=2.5 Score=38.98 Aligned_cols=92 Identities=7% Similarity=0.087 Sum_probs=65.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003020 710 MIDLYSERSMVRQAEEIFEIMKKKGDAN---EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVD 786 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 786 (856)
+...+...+++++|+..++..+....+. ..+-..|.+.....|.+|+|+..++...+.+. .+.....-++++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 3455677888888888888777543211 12334567778888889999888887766432 334456678888899
Q ss_pred CCHHHHHHHHHHHHHcC
Q 003020 787 GRFKDVIGTFKDMVNAA 803 (856)
Q Consensus 787 g~~~~A~~~~~~~~~~g 803 (856)
|+.++|...|++.++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999888864
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.83 E-value=27 Score=44.92 Aligned_cols=149 Identities=13% Similarity=-0.024 Sum_probs=93.0
Q ss_pred HHHHHHccCChHHHHHHHHHH----HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH
Q 003020 397 LIFLHAKNDKISMASRYFWKM----KEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYI 472 (856)
Q Consensus 397 li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 472 (856)
+..+-.+++.+.+|...++.- .+.. ....-|-.+-..|..-+++|...-+...-.. ++ .+..-+....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~-sl~~qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DP-SLYQQILEHE 1460 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Cc-cHHHHHHHHH
Confidence 334556778888888888773 2110 1122333344478888888877666553111 11 2233445566
Q ss_pred HcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHH-HHHHHccCCHHHHHHH
Q 003020 473 EAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVM-VKAYGMGRNYDKACNL 551 (856)
Q Consensus 473 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~ 551 (856)
..|++..|...|+++...+|.....+..........|.+...+...+.......+...-|+.+ +.+--+.++++.....
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 778899999999999888888888888887777778888887776666555555555555544 3333556666655554
Q ss_pred HH
Q 003020 552 FD 553 (856)
Q Consensus 552 ~~ 553 (856)
..
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 44
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.65 E-value=4 Score=35.96 Aligned_cols=71 Identities=11% Similarity=0.061 Sum_probs=38.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003020 717 RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGR 788 (856)
Q Consensus 717 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 788 (856)
.++.+++..++..+.-..|..+..-..-++.+...|+|++|+++++++.+.++. .+..-..++.++...|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~-~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA-PPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC-chHHHHHHHHHHHhcCC
Confidence 556666666666666655555555555555566666666666666666655443 23333333334444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.61 E-value=5.2 Score=35.96 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=26.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH
Q 003020 681 KVGYLKEAQETYKLLRSLEASPDVYT-SNCMIDLYSERSMVRQAEEIFEIMKKKGDANEF 739 (856)
Q Consensus 681 ~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 739 (856)
+.++.+++..+++.+.-.. |.... -..-+..+...|++.+|+.+++++....+..+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred ccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH
Confidence 4455555555555555422 22211 111223344555566666666555544443333
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.60 E-value=17 Score=41.85 Aligned_cols=188 Identities=10% Similarity=0.090 Sum_probs=110.5
Q ss_pred HHHHHHHHhHHcCCCCCCH--HHHHHHHHHHH-ccCCHHHHHHHHHHHHhCCCCcChh-----hHHHHHHHHHcCCCHHH
Q 003020 176 RALEIFEWFKRQECHELNV--IHYNIMLRTLG-KARKWSYVQSLWDEMSVKGIVPINS-----TYGTLIDVCSKGGLKEE 247 (856)
Q Consensus 176 ~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~g~~~~ 247 (856)
.|+..++.+.+....+|.. .++-.++..+. ...++++|+..+++.....-.++.. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 4788888777654445544 56667777777 5688999999999876543222222 2345566777777666
Q ss_pred HHHHHHHHHhCC----CCccHHHHHHH-HHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHh
Q 003020 248 AVCWLERMNEGG----MEPDEVTMGIV-VQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSY 322 (856)
Q Consensus 248 A~~~~~~~~~~~----~~~~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (856)
|...+++.++.- ..+-...+..+ +..+...+++..|.+.++.+..... ....+...
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~-------------------~~~d~~~~ 178 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN-------------------QRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh-------------------hcCCHHHH
Confidence 999988887642 12222333333 2233334788889998887753210 01122234
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHHHHCCC---------CCCHHhHHHHHHHHh--cCCCHHHHHHHHHHHH
Q 003020 323 TYNTLIDTYG--KAGQLKEASETFAQMLREGI---------VPTTVTFNTMIHIYG--NNDQLAEVDSLIKKME 383 (856)
Q Consensus 323 ~~~~li~~~~--~~g~~~~A~~~~~~~~~~g~---------~p~~~~~~~ll~~~~--~~g~~~~A~~~~~~~~ 383 (856)
.+-.++.+.. +.+..+++.+.++++..... .|-..+|..+++.++ ..|+++.+...++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444433 45667778777777643211 234556777766554 5677777766666554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.57 E-value=6.5 Score=41.99 Aligned_cols=82 Identities=12% Similarity=0.124 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH
Q 003020 740 TYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF--TFKSLGA 816 (856)
Q Consensus 740 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~ 816 (856)
+-..|+.++.+.|+.++|++.++++++..|.. ......+|+.+|...+++.++..++.+--+.. -|... +|+..+-
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaALL 339 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAALL 339 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHHH
Confidence 44568888899999999999999999876553 34688999999999999999999999965433 34443 4766554
Q ss_pred HHHHcC
Q 003020 817 VLMKCG 822 (856)
Q Consensus 817 ~~~~~G 822 (856)
.....|
T Consensus 340 kaRav~ 345 (539)
T PF04184_consen 340 KARAVG 345 (539)
T ss_pred HHHhhc
Confidence 443333
|
The molecular function of this protein is uncertain. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.2 Score=31.58 Aligned_cols=32 Identities=22% Similarity=0.115 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 739 FTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.+|..++.+|...|++++|+..++++++..|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46888889999999999999999999887654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.21 Score=31.42 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=12.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003020 741 YAMMLIMYKRNGRFEEATRIAKQMRESG 768 (856)
Q Consensus 741 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 768 (856)
|..++.++...|++++|++.++++++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4444444444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.50 E-value=1.7 Score=37.64 Aligned_cols=48 Identities=6% Similarity=0.058 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHH
Q 003020 666 PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS-LEASPDVYTSNCMIDL 713 (856)
Q Consensus 666 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~ 713 (856)
.|+..+..+++.+|+..|++..|+++.+...+ .+++-+...|..|+.-
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34555555555555555555555555554444 3344444455555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.074 Score=34.25 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 740 TYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 740 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
+|..|+.+|.+.|++++|+++|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.18 Score=31.75 Aligned_cols=33 Identities=15% Similarity=0.317 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003020 773 LLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD 807 (856)
Q Consensus 773 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 807 (856)
+..|..++.+|...|++++|++.|++.++. .|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l--~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL--DPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CcC
Confidence 357889999999999999999999999984 554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.24 E-value=5.1 Score=35.70 Aligned_cols=35 Identities=9% Similarity=-0.033 Sum_probs=16.4
Q ss_pred cCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcc
Q 003020 508 RGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMG 542 (856)
Q Consensus 508 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 542 (856)
.+........++.+...++.++...+.++..|++.
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 34444444444444444334445555555555543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.15 E-value=18 Score=40.89 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHhCC
Q 003020 543 RNYDKACNLFDSMTSHG 559 (856)
Q Consensus 543 g~~~~A~~~~~~m~~~~ 559 (856)
.+.+.|..++++.-+.|
T Consensus 378 r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCHHHHHHHHHHHHHcc
Confidence 34555555555555554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.13 E-value=6.4 Score=35.53 Aligned_cols=124 Identities=14% Similarity=0.137 Sum_probs=65.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHHcCC
Q 003020 644 FADVGNVKQAQSYFDAMESAGLPPNAV-IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSN---CMIDLYSERSM 719 (856)
Q Consensus 644 ~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~ 719 (856)
+.+.++.++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-..--. .-.-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 355666777777777777665432221 11222334456677777777777665533333322100 11123345666
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 720 VRQAEEIFEIMKKKG-DANEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 720 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
|++.....+.+...+ |.-...-..|+.+-.+.|++.+|.+.|+++...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 666666655554333 223334455666666666666666666666553
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.04 E-value=1.6 Score=37.91 Aligned_cols=27 Identities=4% Similarity=-0.065 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIM 730 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 730 (856)
..++..++.++++.|+.+....++++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~ 28 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSV 28 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 445666666677777776666666655
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=92.99 E-value=7 Score=44.78 Aligned_cols=68 Identities=6% Similarity=0.041 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCC-------HHHHHHHHHHHHhCCCCccH
Q 003020 195 IHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGL-------KEEAVCWLERMNEGGMEPDE 264 (856)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~ 264 (856)
.+| .+|-.+.|+|.+++|.++..+... ........+...+..|....+ -+....-|++..+.....|+
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 345 466677888888888888844332 233355567777777765432 23455556666655442244
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.51 Score=46.92 Aligned_cols=95 Identities=18% Similarity=0.054 Sum_probs=81.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 003020 674 SLIKLYTKVGYLKEAQETYKLLRSLEASP-DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG 752 (856)
Q Consensus 674 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 752 (856)
--++-|.++|++++|+..|..... ..| +.+++..-..+|.+...+..|+.-.+.+...+..-..+|..-+.+-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 347789999999999999988776 445 77888888889999999999999999888877666778888888888889
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 003020 753 RFEEATRIAKQMRESGLI 770 (856)
Q Consensus 753 ~~~~A~~~~~~~~~~~~~ 770 (856)
+..+|.+-++.++++.|.
T Consensus 180 ~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK 197 (536)
T ss_pred hHHHHHHhHHHHHhhCcc
Confidence 999999999999998776
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.47 E-value=22 Score=40.04 Aligned_cols=111 Identities=13% Similarity=0.123 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYS 715 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 715 (856)
+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.++...+++++-+++-+.... +.-|.-.+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHH
Confidence 33444455666777777777665543 46777777777888888888776665444322 234555677788
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003020 716 ERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQM 764 (856)
Q Consensus 716 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 764 (856)
+.|+.++|..++.+.... . -...+|.+.|++.+|.+..-+-
T Consensus 756 ~~~n~~EA~KYiprv~~l----~----ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL----Q----EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hcccHHHHhhhhhccCCh----H----HHHHHHHHhccHHHHHHHHHHh
Confidence 888888888887766532 1 3566777888888887765443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.44 E-value=25 Score=40.59 Aligned_cols=193 Identities=15% Similarity=0.124 Sum_probs=102.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHH-HHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 003020 610 MKLGQLEMAEEVYKDMIRFNVEPDV-------VVYGVLINA-FADVGNVKQAQSYFDAMESA----GLPPNAVIYNSLIK 677 (856)
Q Consensus 610 ~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~ 677 (856)
....++++|..+..++...-..|+. ..|+.+-.. ....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3456777777777776543222211 234433222 23467888888887777553 12244566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHH--HHHHHHcCCH--HHHHHHHHHHHhCC----CCCH---HHHHH
Q 003020 678 LYTKVGYLKEAQETYKLLRSLEASPDVYT---SNCM--IDLYSERSMV--RQAEEIFEIMKKKG----DANE---FTYAM 743 (856)
Q Consensus 678 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l--~~~~~~~g~~--~~A~~~~~~~~~~~----~~~~---~~~~~ 743 (856)
+..-.|++++|..+.+...+..-.-++.. |..+ ...+..+|+. ++.+..+....... +... .+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 78888899988888776655322233332 2222 2335566733 33333343333221 2222 23344
Q ss_pred HHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 744 MLIMYKR-NGRFEEATRIAKQMRESGLISDLLSY--NNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 744 l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
+.+++.+ .+...+|..-++-.....+.|-.... ..++.++...|+.++|.....++...
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4444443 12222333333333333344322222 36788888899999998888888763
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.18 E-value=15 Score=37.39 Aligned_cols=222 Identities=16% Similarity=0.155 Sum_probs=117.4
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHhcC-CHHHHHHHHHHHHHC--------CCCCCH----
Q 003020 611 KLGQLEMAEEVYKDMIRFN--VEPDV------VVYGVLINAFADVG-NVKQAQSYFDAMESA--------GLPPNA---- 669 (856)
Q Consensus 611 ~~g~~~~A~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--------~~~p~~---- 669 (856)
+.|+.+.|..++.++.... ..|+. ..|+. +......+ ++++|..++++..+. ...|+.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~-G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNI-GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4555666666665554321 12221 12222 22233344 676666666555332 112332
Q ss_pred -HHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003020 670 -VIYNSLIKLYTKVGYLK---EAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMML 745 (856)
Q Consensus 670 -~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 745 (856)
.++..++.+|...+..+ +|.++.+.+.... ...+..+..-+..+.+.++.+++.+.+.+|...-......+...+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 45667777777776654 4555555554422 122344445566666688899999999999887643444444444
Q ss_pred HHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHH--hcCC------HHHHHHHHHHHHH-cCCCCCHHHH
Q 003020 746 IMYK--RNGRFEEATRIAKQMRESGLISDLLSYN---NVLGLYA--VDGR------FKDVIGTFKDMVN-AAIQPDDFTF 811 (856)
Q Consensus 746 ~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~--~~g~------~~~A~~~~~~~~~-~g~~p~~~~~ 811 (856)
..+. .......|...+..++...+.|....|. .+...+. ..++ .+....+++...+ .+-+.+..+-
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 4442 2233456777777777655554443121 1112222 2222 3444444553333 3445567788
Q ss_pred HHHHHHHHHcCHHHHHhhcchhh
Q 003020 812 KSLGAVLMKCGLELTRKKNAQSG 834 (856)
Q Consensus 812 ~~l~~~~~~~G~~~~~~~~~~~~ 834 (856)
.+++..+++.|-.......+.-.
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A 265 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEA 265 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHH
Confidence 89999999999555554444444
|
It is also involved in sporulation []. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.02 E-value=2.5 Score=45.72 Aligned_cols=130 Identities=11% Similarity=0.126 Sum_probs=94.7
Q ss_pred hHHHhhccccccHHHHhhHhhhhcChhHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003020 136 PSMLQALDTVKDLDEALKPWAENLSNKERSIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQS 215 (856)
Q Consensus 136 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 215 (856)
+.++.-+..+|..++||+. ..+++..-.+.-+.|+++.|.++...+. +..-|..|..+....|++..|.+
T Consensus 618 t~va~Fle~~g~~e~AL~~---s~D~d~rFelal~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~E 687 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQALEL---STDPDQRFELALKLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASE 687 (794)
T ss_pred hhHHhHhhhccchHhhhhc---CCChhhhhhhhhhcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHH
Confidence 3566667778888888876 4456566666677888888888776553 46779999999999999999999
Q ss_pred HHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003020 216 LWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKW 290 (856)
Q Consensus 216 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 290 (856)
+|.+... |..|+-.+...|+.+.-..+-....+.|.. |....+|...|+++++.+++..-
T Consensus 688 C~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 688 CFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 9977543 446666777778777666666666665532 33345677789999999988654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.84 E-value=34 Score=40.85 Aligned_cols=127 Identities=21% Similarity=0.245 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCCHHHH
Q 003020 648 GNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVY----TSNCMIDLYSERSMVRQA 723 (856)
Q Consensus 648 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A 723 (856)
++++.|+..+.++-. ..|.-..+.-.+.|.+.+|+.+|. |+.. .|....+-+.+.+.+++|
T Consensus 894 ~ry~~AL~hLs~~~~-------~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~A 958 (1265)
T KOG1920|consen 894 KRYEDALSHLSECGE-------TYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEA 958 (1265)
T ss_pred HHHHHHHHHHHHcCc-------cccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHH
Confidence 455666555544431 122333344456666666666543 3322 233333444455666666
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 724 EEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLL--SYNNVLGLYAVDGRFKDVIGTFKDMV 800 (856)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 800 (856)
.-+|+..-+. .--+.+|..+|+|.+|..+..++..-. |.. .-..|..-+..++++-+|-++..+..
T Consensus 959 al~Ye~~Gkl--------ekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 959 ALMYERCGKL--------EKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccH--------HHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 6666554321 123445666666776666666554311 211 11445555555666655555555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.33 E-value=2.7 Score=40.99 Aligned_cols=64 Identities=20% Similarity=0.238 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003020 759 RIAKQMRESGLISDLLSYNNVLGLYAVD----------------GRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 759 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G 822 (856)
..++.|.+.|+.-|..+|..|++++-+. .+-+-+++++++|...|+.||..+-..|++++++.|
T Consensus 93 ~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 93 TALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 3344455555555555555555443221 123668999999999999999999999999999999
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.27 E-value=13 Score=34.98 Aligned_cols=186 Identities=18% Similarity=0.114 Sum_probs=105.7
Q ss_pred HHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChH
Q 003020 502 IDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPH 581 (856)
Q Consensus 502 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 581 (856)
+..|-..|-..-|+--|.......|.-+.+||-++--+...|+++.|.+.|+...+....-+ .+...-.-++.-.|+++
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYK 150 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchH
Confidence 44566677777788888888888888889999999888999999999999999888643322 22222222344467888
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHH-HhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 582 MAKRYLRKMQEAGLVSDCIPYCAVISSY-MKLGQLEMAEEVY-KDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDA 659 (856)
Q Consensus 582 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (856)
.|.+-+...-+.. +.|+ |.++--.. ...-++.+|..-+ ++.. ..|..-|...|-.|.- |+.. ...++++
T Consensus 151 LAq~d~~~fYQ~D-~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yL-gkiS-~e~l~~~ 221 (297)
T COG4785 151 LAQDDLLAFYQDD-PNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYL-GKIS-EETLMER 221 (297)
T ss_pred hhHHHHHHHHhcC-CCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHH-hhcc-HHHHHHH
Confidence 8877666655543 2222 22221111 1223555655433 3333 2344455444433322 1111 1122333
Q ss_pred HHHCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003020 660 MESAGLPPN-------AVIYNSLIKLYTKVGYLKEAQETYKLLRSL 698 (856)
Q Consensus 660 ~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 698 (856)
+... -..+ ..||--+++-+...|+.++|..+|+-....
T Consensus 222 ~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 222 LKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3221 1111 245666777777777777777777766653
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.25 E-value=11 Score=34.09 Aligned_cols=123 Identities=14% Similarity=0.125 Sum_probs=71.4
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCChHh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH--HHHHHhcCCH
Q 003020 575 AGADLPHMAKRYLRKMQEAGLVSDCIP-YCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVV-VYGVL--INAFADVGNV 650 (856)
Q Consensus 575 ~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~g~~ 650 (856)
.+.+..++|+.-|..+.+.|...-+.. ...........|+...|+..|.++-.....|-+. -...+ .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 445566666666666666554332221 1222334556677777888887776544333322 11111 1234567777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 651 KQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 651 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
++.....+.+...+-+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77777777766555444445556666666777888888887777665
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.15 E-value=12 Score=34.74 Aligned_cols=118 Identities=11% Similarity=0.050 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 003020 652 QAQSYFDAMESAGLPPNAVIYNS--LIKLYTKVGYLKEAQETYKLLRSLEASPD--VYTSNCMIDLYSERSMVRQAEEIF 727 (856)
Q Consensus 652 ~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 727 (856)
+.....+++...+......++.. +...+...|++++|+.-++.........+ ...--.|.+.....|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44455555555421222223332 34567788999999998887765321111 122234566778889999999998
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 728 EIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 728 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
+.....+ -.......-++++...|+-++|..-|++.++.+..
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 7765431 12233455678899999999999999999998744
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.12 E-value=30 Score=38.90 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=31.7
Q ss_pred CCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003020 350 EGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLH 401 (856)
Q Consensus 350 ~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 401 (856)
....|| |..+.++|.-..+.+.+.++++++.+.. ....+|..-.+.+
T Consensus 207 ~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e~--~~llayQIAFDL~ 253 (929)
T KOG2062|consen 207 KLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKED--DLLLAYQIAFDLY 253 (929)
T ss_pred cCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhcc--hhhhHHHHHHHHh
Confidence 345566 5667788888999999999999998632 2334454444444
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.04 E-value=20 Score=36.72 Aligned_cols=155 Identities=16% Similarity=0.140 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----C-
Q 003020 649 NVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTK----VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSER-----S- 718 (856)
Q Consensus 649 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g- 718 (856)
+..+|..+|..+.+.|. ......|...|.. ..+..+|..+|+++.+.|..+-......+...|... -
T Consensus 92 ~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 35556666665555442 2222334444433 236666777776666655433222233333333332 1
Q ss_pred -CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC------
Q 003020 719 -MVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR----NGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDG------ 787 (856)
Q Consensus 719 -~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------ 787 (856)
+...|...+.++...+ ++.....++..|.. ..+.++|...|+++.+.|. ......++ .+...|
T Consensus 169 ~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~ 242 (292)
T COG0790 169 YDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKA 242 (292)
T ss_pred HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhh
Confidence 2236777777777665 55556666666543 3378888888888888874 45555555 555555
Q ss_pred ---------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 003020 788 ---------RFKDVIGTFKDMVNAAIQPDDFTFK 812 (856)
Q Consensus 788 ---------~~~~A~~~~~~~~~~g~~p~~~~~~ 812 (856)
+...|...+......|.........
T Consensus 243 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 243 AFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred hhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 5666666666666655444444333
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.91 E-value=1.8 Score=42.09 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC----------------ChHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 003020 370 DQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKND----------------KISMASRYFWKMKEANLEPDIVSYRTLL 433 (856)
Q Consensus 370 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------~~~~A~~~~~~m~~~~~~~~~~~~~~ll 433 (856)
+.++-....++.|.+.|+..|..+|+.|+..+=+.. +-+-+++++++|...|+.||-.+-..|+
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 344444444445555555555555555554433211 1234566666666666666666666666
Q ss_pred HHHHhcCC
Q 003020 434 YAYSIRRM 441 (856)
Q Consensus 434 ~~~~~~g~ 441 (856)
.++.+.+-
T Consensus 166 n~FGr~~~ 173 (406)
T KOG3941|consen 166 NAFGRWNF 173 (406)
T ss_pred HHhccccc
Confidence 66655554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.88 E-value=7.3 Score=36.31 Aligned_cols=62 Identities=11% Similarity=0.193 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA--VIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
.+..+...|++.|+.++|++.|.++.+....+.. ..+-.++......|++..+.....++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4445555555666666666666555554322222 3344455555555555555555544443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.63 E-value=3.9 Score=38.12 Aligned_cols=63 Identities=22% Similarity=0.235 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD--VYTSNCMIDLYSERSMVRQAEEIFEIMKK 732 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 732 (856)
..+..+++.|.+.|+.++|++.|.++.+....+. ...+-.+++.....+++..+...+.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566777777777777777777777766443333 23455666666667777777766665554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.39 E-value=39 Score=38.94 Aligned_cols=170 Identities=12% Similarity=0.017 Sum_probs=102.1
Q ss_pred CcCHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHH-----hHHHHHHHHhcCCCHHHHHHHHHHHHhCC----C
Q 003020 318 SLSSYTYNTLIDTYG-KAGQLKEASETFAQMLREGIVPTTV-----TFNTMIHIYGNNDQLAEVDSLIKKMEELH----C 387 (856)
Q Consensus 318 ~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~g~~p~~~-----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~ 387 (856)
...+.++-.+...+. ...++++|...+++.....-.++.. ....++..+.+.+... |...+++.++.- .
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~ 134 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH 134 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence 334567777777777 6789999999999875543233322 2345567777776666 888888876531 1
Q ss_pred CCCHHHHHHH-HHHHHccCChHHHHHHHHHHHHcC---CCCCHHhHHHHHHHHH--hcCCHHHHHHHHHHHhcCCC----
Q 003020 388 PPDTRTYNIL-IFLHAKNDKISMASRYFWKMKEAN---LEPDIVSYRTLLYAYS--IRRMVCEAEELISEMDGGGL---- 457 (856)
Q Consensus 388 ~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~~---- 457 (856)
.+-...+.-+ +..+...+++..|.+.++.+...- ..|-...+-.++.+.. +.+..+++++.++++.....
T Consensus 135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~ 214 (608)
T PF10345_consen 135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQL 214 (608)
T ss_pred hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhccc
Confidence 1222333333 333434489999999998876421 1233444444444433 55667777777777633211
Q ss_pred -----CCCHhhHHHHHHHHH--HcCChHHHHHHHHHHH
Q 003020 458 -----EIDEYTQSALTRMYI--EAGMLEKSWLWFRRFH 488 (856)
Q Consensus 458 -----~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 488 (856)
.|-..++..++..++ ..|+++.+...++++.
T Consensus 215 ~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 215 DPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 223445666665554 4677777777766654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=90.12 E-value=3 Score=38.10 Aligned_cols=109 Identities=13% Similarity=0.069 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHhhc----------CCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCC---
Q 003020 478 EKSWLWFRRFHLAGDMSSEGYSANIDGYGER----------GHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRN--- 544 (856)
Q Consensus 478 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 544 (856)
+.|++.++.....+|.+.+.++..+.++... ..+++|+.-|+.+...+|....++..++.+|...+.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 3344444444444555555444443333222 123445555555555556556666666665544321
Q ss_pred --------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 003020 545 --------YDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAG 594 (856)
Q Consensus 545 --------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 594 (856)
+++|...|++... ..|+..+|+.-+.... +|-+++.++.+++
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 3455555555544 3577777777666543 3556666665554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.90 E-value=20 Score=37.33 Aligned_cols=136 Identities=5% Similarity=0.017 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 003020 686 KEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR---NGRFEEATRIAK 762 (856)
Q Consensus 686 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~ 762 (856)
+.-+.+|+++++.+. .+......++..+.+.-+.++..+.++++....|.+...|...+..... .-.++....+|.
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 455667777776532 4455666777777777777888888888888777788877777666544 224666666666
Q ss_pred HHHHc------CC------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH------HHHHHHHHH
Q 003020 763 QMRES------GL------ISD-----LLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAI-QPDDF------TFKSLGAVL 818 (856)
Q Consensus 763 ~~~~~------~~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~------~~~~l~~~~ 818 (856)
+.+.. +. .++ ...+..+...+...|-.+.|+.+++-+++..+ .|+.. .....+..|
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~~~~~~~fe~F 206 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLSSSSFSERLESFEEF 206 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence 66532 11 011 12334445556788999999999999998654 34432 223455566
Q ss_pred HHcC
Q 003020 819 MKCG 822 (856)
Q Consensus 819 ~~~G 822 (856)
..+|
T Consensus 207 WeS~ 210 (321)
T PF08424_consen 207 WESE 210 (321)
T ss_pred hCcC
Confidence 6665
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.60 E-value=0.8 Score=30.37 Aligned_cols=29 Identities=17% Similarity=0.488 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 773 LLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 773 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
..+++.++.+|...|++++|..+++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788899999999999999999998876
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.42 E-value=34 Score=36.77 Aligned_cols=242 Identities=12% Similarity=0.140 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC------ChHHHHHHHHHHHHcC-C-CCChHhHHHHHHHHHhcCCHHH
Q 003020 546 DKACNLFDSMTSHGAVPDKCSYNSLIQILAGAD------LPHMAKRYLRKMQEAG-L-VSDCIPYCAVISSYMKLGQLEM 617 (856)
Q Consensus 546 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~ 617 (856)
+....+|++..+. .|+...+...|..|...- ....-..+++...+.+ . +.....|..+.-.++......+
T Consensus 299 s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~ 376 (568)
T KOG2396|consen 299 SRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE 376 (568)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH
Confidence 3344666666553 345555666666655422 3333444555544432 1 2233446666555555544333
Q ss_pred -HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHH--HH
Q 003020 618 -AEEVYKDMIRFNVEPDVVVYGVLINAFADVG-NVKQA-QSYFDAMESAGLPPNAVIYNSLIKLYTKVGY-LKEAQ--ET 691 (856)
Q Consensus 618 -A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A-~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~--~~ 691 (856)
|+.+..+. +..+...|..-+....+.. +.+-- ..+|......-..+....|+... .|+ ..... .+
T Consensus 377 ~a~~l~~e~----f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~I 447 (568)
T KOG2396|consen 377 VAVKLTTEL----FRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLI 447 (568)
T ss_pred HHHHhhHHH----hcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHH
Confidence 33333233 3456666766655555332 21111 12222333221122333344333 222 22221 12
Q ss_pred HHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHc-
Q 003020 692 YKLLRSLEASPDVYT-SNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR--NGRFEEATRIAKQMRES- 767 (856)
Q Consensus 692 ~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~- 767 (856)
+...... ..|+..+ -+.+++.+.+.|-+.+|...+.++....|++...+..++..-.. .-+..-+.+.|+.+...
T Consensus 448 i~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~f 526 (568)
T KOG2396|consen 448 ISALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREF 526 (568)
T ss_pred HHHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHh
Confidence 2333332 2355554 35677888889999999999999999989998888887765332 22377788899888765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 768 GLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 768 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
| .|+..|......-...|+.+-+-.++.++.+
T Consensus 527 g--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 527 G--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred C--CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 5 4888898888777789999998888888776
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.38 E-value=7 Score=37.36 Aligned_cols=104 Identities=8% Similarity=-0.114 Sum_probs=76.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHH
Q 003020 677 KLYTKVGYLKEAQETYKLLRSLEASPDVY-TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFE 755 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 755 (856)
+-|....+++.|+..|.+.+. +.|+.. -|..-+.++.+..+++.+..--.++++..|........++.++.....++
T Consensus 18 nk~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 345666788888888877766 446664 44566667778888888888888888887777778888888888888899
Q ss_pred HHHHHHHHHHHc----CCCCCHHHHHHHHHH
Q 003020 756 EATRIAKQMRES----GLISDLLSYNNVLGL 782 (856)
Q Consensus 756 ~A~~~~~~~~~~----~~~p~~~~~~~l~~~ 782 (856)
+|+..++++... .+.+....+..|..+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 999888888543 233344566666554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.05 E-value=33 Score=36.21 Aligned_cols=65 Identities=15% Similarity=0.080 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 633 DVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPP---NAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 633 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
...+|..++..+.+.|.++.|...+..+...+..+ .+.....-.+..-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777777777888888887777776543111 223333445556667777777777766655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.90 E-value=34 Score=36.13 Aligned_cols=117 Identities=12% Similarity=-0.007 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-C-C-----
Q 003020 667 PNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASP---DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG-D-A----- 736 (856)
Q Consensus 667 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~-~----- 736 (856)
....+|..+...+.+.|.++.|...+..+...+..+ .+.....-+......|+..+|+..++...... . .
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 445678889999999999999999999887743211 23333345667778899999999988777621 0 0
Q ss_pred --------------------C-------HHHHHHHHHHHHHc------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 737 --------------------N-------EFTYAMMLIMYKRN------GRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783 (856)
Q Consensus 737 --------------------~-------~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 783 (856)
+ ..++..++.-+... +..+++.+.|+++.+..+. ....|..++..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~k~~~~~a~~~ 302 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS-WEKAWHSWALFN 302 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh-HHHHHHHHHHHH
Confidence 0 11233344444445 7788888888888887765 556777666655
Q ss_pred H
Q 003020 784 A 784 (856)
Q Consensus 784 ~ 784 (856)
.
T Consensus 303 ~ 303 (352)
T PF02259_consen 303 D 303 (352)
T ss_pred H
Confidence 4
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.68 E-value=31 Score=35.31 Aligned_cols=147 Identities=13% Similarity=0.324 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCC--
Q 003020 651 KQAQSYFDAMESAGLPPNAVIYNSLIKLYTK--V----GYLKEAQETYKLLRSLEA---SPDVYTSNCMIDLYSERSM-- 719 (856)
Q Consensus 651 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~-- 719 (856)
++.+.+++.|.+.|+.-+..+|-+..-.... . ....+|..+|+.|.+..+ .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455667777777777666555443322222 1 234567788888887432 2344444444332 2222
Q ss_pred --HHHHHHHHHHHHhCC--CCCH-HHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003020 720 --VRQAEEIFEIMKKKG--DANE-FTYAMMLIMYKRNGR--FEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDV 792 (856)
Q Consensus 720 --~~~A~~~~~~~~~~~--~~~~-~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 792 (856)
.+.++..|+.+.+.+ ..|. .....++..+..... ...+.++++.+.+.+.++....|..+|-.-.-.+..++.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~ 236 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKI 236 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHH
Confidence 355667777777755 3343 333333333322222 457788888888888886666666555433333333244
Q ss_pred HHHHHHH
Q 003020 793 IGTFKDM 799 (856)
Q Consensus 793 ~~~~~~~ 799 (856)
..-+.++
T Consensus 237 ~~~i~ev 243 (297)
T PF13170_consen 237 VEEIKEV 243 (297)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.45 E-value=0.77 Score=28.83 Aligned_cols=27 Identities=19% Similarity=0.481 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 775 SYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 775 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+|..++.+|...|++++|...|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555555555555555555555544
|
... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.35 E-value=52 Score=37.51 Aligned_cols=172 Identities=15% Similarity=0.103 Sum_probs=98.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcC
Q 003020 163 ERSIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKG 242 (856)
Q Consensus 163 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 242 (856)
+.-..+-+.+.|++|+.+-+......+-......+..+|..+.-.|++++|-...-.|... +..-|.-.+..+...
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 3444566678899999888766543211113467889999999999999999999888875 667787777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHh
Q 003020 243 GLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSY 322 (856)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (856)
++...-..+ +.......++..|..++..+.. .+...=.++...+... +... .......+.....+. .+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~--Lys~---l~iisa~~~q~~q~S-e~~~ 506 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGH--LYSV---LTIISATEPQIKQNS-ESTA 506 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChh--hhhh---hHHHhhcchHHHhhc-cchh
Confidence 765443222 2222222456677777777766 3333322333222210 0000 000000000001111 1123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 323 TYNTLIDTYGKAGQLKEASETFAQML 348 (856)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~~~ 348 (856)
.-..|+..|...+++..|+..+-..+
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhcc
Confidence 34447888888888888888887764
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.19 E-value=18 Score=32.05 Aligned_cols=51 Identities=12% Similarity=-0.151 Sum_probs=25.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 003020 474 AGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEG 524 (856)
Q Consensus 474 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 524 (856)
.++.+++..+++.+....|...+.-.--+-.+...|++++|.++|+...+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 455555555555555544544444444444444555555555555544443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.18 E-value=0.84 Score=48.06 Aligned_cols=107 Identities=12% Similarity=0.016 Sum_probs=78.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003020 713 LYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDV 792 (856)
Q Consensus 713 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 792 (856)
.....+.++.|+.++.++++..|.....|..-..++.+.+++..|+.=+.++++..|. -...|.--+.++.+.+++.+|
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHHHH
Confidence 3445567778888888888777777766666667777888888888888888877755 456676677777777778888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003020 793 IGTFKDMVNAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 793 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G 822 (856)
+..|+.... +.|+..-....+.-+.+..
T Consensus 92 ~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 92 LLDLEKVKK--LAPNDPDATRKIDECNKIV 119 (476)
T ss_pred HHHHHHhhh--cCcCcHHHHHHHHHHHHHH
Confidence 777777666 5777777777777666666
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.84 E-value=7.2 Score=35.10 Aligned_cols=53 Identities=13% Similarity=-0.114 Sum_probs=27.0
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 003020 472 IEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEG 524 (856)
Q Consensus 472 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 524 (856)
...++.+++..++..+....|...+.-..-+..+..+|++.+|+++|+.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34455555555555555555544444444444455555555555555554443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.76 E-value=44 Score=36.02 Aligned_cols=180 Identities=13% Similarity=0.196 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003020 563 DKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLIN 642 (856)
Q Consensus 563 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 642 (856)
|.....+++..+....+..-...+..+|+.-| .+-..|..++.+|... ..+.-..+|+++.+..+. |++.-..+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 34444455555555555555555555555543 3444555566666555 345555666655554322 3333333443
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHH
Q 003020 643 AFADVGNVKQAQSYFDAMESAGLPP--N---AVIYNSLIKLYTKVGYLKEAQETYKLLRS-LEASPDVYTSNCMIDLYSE 716 (856)
Q Consensus 643 ~~~~~g~~~~A~~~~~~~~~~~~~p--~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~ 716 (856)
-|-+ ++.+.+..+|.++...-++. + ...|.-+...- ..+.+.-+.+...+.. .|..--.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333 55566666666554432210 1 12333333211 2344444555444443 3333333444444455666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003020 717 RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYK 749 (856)
Q Consensus 717 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 749 (856)
..++.+|++++..+++.+..|..+-..++.-+.
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 666777777777666666556555555554443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.64 E-value=35 Score=36.44 Aligned_cols=119 Identities=13% Similarity=0.071 Sum_probs=86.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC-CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCCCCC----
Q 003020 713 LYSERSMVRQAEEIFEIMKKKG-DA--------NEFTYAMMLIMYKRNGRFEEATRIAKQMRE-------SGLISD---- 772 (856)
Q Consensus 713 ~~~~~g~~~~A~~~~~~~~~~~-~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~---- 772 (856)
.+...|++.+|.+++...--.. +. ....|+.|+..+.+.|.+..+..+|.+++. .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 4556899999999886543222 11 233568899999999999999999988874 344432
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----HHHHHhhcch
Q 003020 773 ------LLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG----LELTRKKNAQ 832 (856)
Q Consensus 773 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G----~~~~~~~~~~ 832 (856)
-...++.+-.|...|++-.|.+.|.+.+.- +.-++-.|-.+..+|..+- .++.+..+.+
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~ 397 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMALQKGLLEEGNSSLSR 397 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHhhhhhhhhccCCccc
Confidence 244567888999999999999999998874 5667788988888887654 5555544444
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.51 E-value=4.5 Score=43.91 Aligned_cols=131 Identities=14% Similarity=0.057 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003020 322 YTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLH 401 (856)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 401 (856)
..-+.+++.+-++|..++|+++ .+|...-. ....+.|+++.|.++..+.. +..-|..|.++.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF---elal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALEL---------STDPDQRF---ELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhc---------CCChhhhh---hhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 4566778888888888888654 23433222 23346789999988877754 677899999999
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHH
Q 003020 402 AKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSW 481 (856)
Q Consensus 402 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 481 (856)
.+.|++..|.+.|.+... |..|+..+...|+.+.-..+-....+.|.. +....+|...|+++++.
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECL 741 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHH
Confidence 999999999998877653 445666677777766555554444444432 23334555666766665
Q ss_pred HHHH
Q 003020 482 LWFR 485 (856)
Q Consensus 482 ~~~~ 485 (856)
+++.
T Consensus 742 ~lLi 745 (794)
T KOG0276|consen 742 ELLI 745 (794)
T ss_pred HHHH
Confidence 5543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.49 E-value=1 Score=27.86 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 776 YNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 776 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+..++.++.+.|++++|.+.|+++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44555666666666666666666655
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.01 E-value=23 Score=36.22 Aligned_cols=130 Identities=13% Similarity=0.247 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--CC----ChHHHHHHHHHHHHcCCC---CChHhHHHHHHHHHhcCC--
Q 003020 546 DKACNLFDSMTSHGAVPDKCSYNSLIQILAG--AD----LPHMAKRYLRKMQEAGLV---SDCIPYCAVISSYMKLGQ-- 614 (856)
Q Consensus 546 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~-- 614 (856)
++.+.+++.|.+.|++-+..+|-+....... .. ....+..+++.|.+..+- ++-.++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4556778888888888777666553333322 11 233556666666665321 222333333322 1222
Q ss_pred --HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003020 615 --LEMAEEVYKDMIRFNVEPDV--VVYGVLINAFADVGN--VKQAQSYFDAMESAGLPPNAVIYNSLIK 677 (856)
Q Consensus 615 --~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 677 (856)
.+.+...|+.+.+.|...+- .....++..+..... ..++.++++.+.+.|+++....|..++-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 23445555555554543322 122222221111111 3345555666666665555555554443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.26 E-value=10 Score=36.38 Aligned_cols=86 Identities=9% Similarity=-0.043 Sum_probs=70.0
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHH
Q 003020 471 YIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACN 550 (856)
Q Consensus 471 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 550 (856)
|....+++.|+..|.+....+|.....|..-+-++.+..+++.+..-..+..+..+..+.....+..+......+++|+.
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 33445677777888888888888888888888888888888888888888888877778888888888888888999988
Q ss_pred HHHHHH
Q 003020 551 LFDSMT 556 (856)
Q Consensus 551 ~~~~m~ 556 (856)
.+.+..
T Consensus 100 ~Lqra~ 105 (284)
T KOG4642|consen 100 VLQRAY 105 (284)
T ss_pred HHHHHH
Confidence 888763
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=86.03 E-value=1.4 Score=27.25 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 740 TYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 740 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
++..++.++.+.|++++|.+.|+++++.-|.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3556777888888888888888888877653
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.00 E-value=1.5 Score=27.45 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003020 739 FTYAMMLIMYKRNGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 769 (856)
.+|..++..|...|++++|.+.|+++++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4677888888888888888888888887654
|
... |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=85.59 E-value=22 Score=30.81 Aligned_cols=66 Identities=5% Similarity=-0.071 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 736 ANEFTYAMMLIMYKRNGR---FEEATRIAKQMRE-SGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 736 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
++..+...+++++.+..+ ..+.+.+++.+.+ ..|.-.....+-|+-++.+.|+|++++++.+.+++
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 344445555555555443 3445555555554 22222224445555556666666666666666665
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.36 E-value=2.9 Score=45.02 Aligned_cols=100 Identities=11% Similarity=-0.031 Sum_probs=51.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 680 TKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATR 759 (856)
Q Consensus 680 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 759 (856)
.-.|+...|...+..+.-.......+....|.......|...+|-.++...+......+.++..+++++....+.+.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 34455566666555544321111112223444444455555556666655555544445555566666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHH
Q 003020 760 IAKQMRESGLISDLLSYNNVL 780 (856)
Q Consensus 760 ~~~~~~~~~~~p~~~~~~~l~ 780 (856)
.+++++++.++ ++.+-+.|.
T Consensus 698 ~~~~a~~~~~~-~~~~~~~l~ 717 (886)
T KOG4507|consen 698 AFRQALKLTTK-CPECENSLK 717 (886)
T ss_pred HHHHHHhcCCC-ChhhHHHHH
Confidence 66666666555 555444443
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.31 E-value=0.56 Score=46.95 Aligned_cols=90 Identities=11% Similarity=-0.008 Sum_probs=49.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003020 717 RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTF 796 (856)
Q Consensus 717 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 796 (856)
.|.+++|++.+...+...|+....|..-..++.+.+++..|++=+..++++++. ....|-.-+.+....|+|++|...+
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHHHH
Confidence 345555555555555555555555555555555555666666655555555443 3334444444455556666666666
Q ss_pred HHHHHcCCCCC
Q 003020 797 KDMVNAAIQPD 807 (856)
Q Consensus 797 ~~~~~~g~~p~ 807 (856)
....+.++.++
T Consensus 206 ~~a~kld~dE~ 216 (377)
T KOG1308|consen 206 ALACKLDYDEA 216 (377)
T ss_pred HHHHhccccHH
Confidence 55555544443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.16 E-value=50 Score=34.36 Aligned_cols=89 Identities=6% Similarity=-0.083 Sum_probs=48.9
Q ss_pred HHHHHhcCCCCchhhHHHHHHHhhcC------------CHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 003020 484 FRRFHLAGDMSSEGYSANIDGYGERG------------HVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNL 551 (856)
Q Consensus 484 ~~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 551 (856)
|++....+|.+.++|..++..--..- -.+.-+.+++++.+.++.+...+..++..+.+..+.++..+.
T Consensus 8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~ 87 (321)
T PF08424_consen 8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK 87 (321)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34444455666666655544322211 123445566666666666667777777777666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHH
Q 003020 552 FDSMTSHGAVPDKCSYNSLIQI 573 (856)
Q Consensus 552 ~~~m~~~~~~p~~~~~~~ll~~ 573 (856)
+++++... +-+...|...+..
T Consensus 88 we~~l~~~-~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 88 WEELLFKN-PGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHC-CCChHHHHHHHHH
Confidence 66666642 1134445444443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.81 E-value=2.3 Score=28.02 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 739 FTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
.+++.|+..|...|++++|+.+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788889999999999999998888764
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=84.37 E-value=33 Score=31.40 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 323 TYNTLIDTYGKAGQLKEASETFAQM 347 (856)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~~ 347 (856)
.+..++..+...|++-+|+.+.+..
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 3455555566666666666665553
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.01 E-value=48 Score=33.01 Aligned_cols=58 Identities=10% Similarity=0.002 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 708 NCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMR 765 (856)
Q Consensus 708 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 765 (856)
+.....|..+|.+.+|.++.++..+.+|.+...+..|+..+...|+--.|.+.|+++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445667777788888888887777777777777777777877777777777776664
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.86 E-value=12 Score=37.35 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=62.1
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC---CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003020 559 GAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAG---LVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVV 635 (856)
Q Consensus 559 ~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 635 (856)
|......+...++..-....+++.++..+-++.... ..++...+ +.+..+ -.-++++++.++..=++-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 444445555555555555667777777666665431 11111111 112222 2235667777777777778888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESA 663 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (856)
+++.+++.+.+.+++.+|..+.-.|+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888887777666544
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.66 E-value=7.2 Score=36.69 Aligned_cols=76 Identities=9% Similarity=0.007 Sum_probs=61.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHH
Q 003020 707 SNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS--DLLSYNNVLGL 782 (856)
Q Consensus 707 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~ 782 (856)
.+.-+..+.+.+..++|+.+.+.-.+..|.|...-..+...++-.|+|++|..-++-+-+..+.- ....|.+++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34456677788899999999998888889998888899999999999999999998888876652 23567776654
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=83.65 E-value=16 Score=29.52 Aligned_cols=39 Identities=10% Similarity=0.184 Sum_probs=18.6
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 762 KQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 762 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
++.++.+|. |......++..+...|++++|++.+-++++
T Consensus 12 ~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 12 EAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444444 445555555555555555555555555544
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=83.54 E-value=16 Score=35.20 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCH-------HHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003020 740 TYAMMLIMYKRNGRF-------EEATRIAKQMRESGLIS-----DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQP 806 (856)
Q Consensus 740 ~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 806 (856)
.+..+++.|...|+. ..|.+.|+++.+....| +......++....+.|++++|.+.|.+++..+-.+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 455667777777763 34555555555543222 23566778888888899999999998888854333
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=83.46 E-value=82 Score=35.94 Aligned_cols=65 Identities=17% Similarity=0.032 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 003020 446 EELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEG 524 (856)
Q Consensus 446 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 524 (856)
....+.++..-+-.+......++..|.+.|-.+.+..+++.+. .-+.+.|++.+|+..|.++...
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~--------------~~~~~~~~~g~AL~~~~ra~d~ 454 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILG--------------QRLLKEGRYGEALSWFIRAGDY 454 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH--------------HHHHHCCCHHHHHHHHHHCCCH
Confidence 4455555554444456666777777888887777777766553 3344556666666666655543
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=82.80 E-value=6.6 Score=27.86 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 776 YNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSL 814 (856)
Q Consensus 776 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 814 (856)
...++-++.+.|++++|.+..+.+++ +.|+......|
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 34455566666666666666666666 36665554444
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.34 E-value=11 Score=35.37 Aligned_cols=72 Identities=8% Similarity=0.006 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHH
Q 003020 721 RQAEEIFEIMKKKG-DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESG---LISDLLSYNNVLGLYAVDGRFKDVI 793 (856)
Q Consensus 721 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~ 793 (856)
++|.+.|-.+...+ -.++.....|+.-|. ..+.++|++++.++++.. -.+|+..+..|+..|.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 55666666665554 344555555554444 556777777777777652 2356777777777777777777763
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.19 E-value=1e+02 Score=35.37 Aligned_cols=168 Identities=14% Similarity=0.129 Sum_probs=90.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCc---ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhc
Q 003020 201 LRTLGKARKWSYVQSLWDEMSVKGIVP---INSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKA 277 (856)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 277 (856)
|..+.+.+.+++|..+-+.... ..| ....+...+..+...|++++|-...-+|... +..-|--.+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 4556677888888887765433 333 3346778888888889999998888887653 333333333323222
Q ss_pred CChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003020 278 GEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTV 357 (856)
Q Consensus 278 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 357 (856)
++..... .-.+..+...+...|..++..+.. .+ ..-|.+..+. -+..
T Consensus 437 ~~l~~Ia-------------------------~~lPt~~~rL~p~vYemvLve~L~-~~----~~~F~e~i~~---Wp~~ 483 (846)
T KOG2066|consen 437 DQLTDIA-------------------------PYLPTGPPRLKPLVYEMVLVEFLA-SD----VKGFLELIKE---WPGH 483 (846)
T ss_pred cccchhh-------------------------ccCCCCCcccCchHHHHHHHHHHH-HH----HHHHHHHHHh---CChh
Confidence 2222211 111222334567788888887766 22 2223333321 1222
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 003020 358 TFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKE 419 (856)
Q Consensus 358 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 419 (856)
.|..+-..-+-.. -+++- .-+...-..|+..|...++++.|.+++-....
T Consensus 484 Lys~l~iisa~~~-------q~~q~-----Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 484 LYSVLTIISATEP-------QIKQN-----SESTALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred hhhhhHHHhhcch-------HHHhh-----ccchhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 3333221111111 11111 11223334488899999999999998877663
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=82.14 E-value=2 Score=25.10 Aligned_cols=22 Identities=5% Similarity=-0.019 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 003020 776 YNNVLGLYAVDGRFKDVIGTFK 797 (856)
Q Consensus 776 ~~~l~~~~~~~g~~~~A~~~~~ 797 (856)
...++.++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445555556666666555543
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=81.49 E-value=1.1e+02 Score=35.38 Aligned_cols=138 Identities=11% Similarity=0.035 Sum_probs=72.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 003020 331 YGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMA 410 (856)
Q Consensus 331 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 410 (856)
..+.|++..+..+..++...-+ .....|..+..... ....+++...+++.. +.|.....-...+..+.+.+++...
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La~~~~w~~~ 118 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANP--TLPPARSLQSRFVNELARREDWRGL 118 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHccCHHHH
Confidence 3467888888777776642211 12223333332221 224555555555532 1122233334444556667777766
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChH
Q 003020 411 SRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLE 478 (856)
Q Consensus 411 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 478 (856)
.+.+.. .+.+...-.....+....|+.++|......+=..|.. .+.....++..+.+.|.+.
T Consensus 119 ~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 119 LAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCC
Confidence 653211 1345555566677788888888887777766444422 3445555666665555443
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.27 E-value=30 Score=33.39 Aligned_cols=99 Identities=14% Similarity=-0.027 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh------CCCCCCHH-----------HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 003020 672 YNSLIKLYTKVGYLKEAQETYKLLRS------LEASPDVY-----------TSNCMIDLYSERSMVRQAEEIFEIMKKKG 734 (856)
Q Consensus 672 ~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~p~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 734 (856)
...-++-+.+.|++.+|...|+.++- ..-+|... .+..+-.++...|++-++++...+++...
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 33344455667777777766654321 11122211 23334456667889999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 735 DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 735 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
|.|..+|..-+.+....=+.++|..-+.++++.+|.
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 999999999999998888999999999999998655
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.24 E-value=68 Score=32.81 Aligned_cols=148 Identities=16% Similarity=0.075 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----C-
Q 003020 614 QLEMAEEVYKDMIRFNVEPDVVVYGVLINAFAD----VGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKV-----G- 683 (856)
Q Consensus 614 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g- 683 (856)
+..+|...|..+.+.| .......|...|.. ..+..+|..+|+++.+.|.++...+...+...|..- -
T Consensus 92 ~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 3555666666554433 22222223333333 225666677777666666433222233344443332 1
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC------
Q 003020 684 -YLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE----RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG------ 752 (856)
Q Consensus 684 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 752 (856)
+...|...|.++...+ +......+...|.. ..+.++|...|.+..+.+. ......+. .+...|
T Consensus 169 ~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~ 242 (292)
T COG0790 169 YDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKA 242 (292)
T ss_pred HHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhh
Confidence 2236777777766654 23333344444432 3477888888888877765 44444455 444444
Q ss_pred ---------CHHHHHHHHHHHHHcCCC
Q 003020 753 ---------RFEEATRIAKQMRESGLI 770 (856)
Q Consensus 753 ---------~~~~A~~~~~~~~~~~~~ 770 (856)
+...|...+......++.
T Consensus 243 ~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 243 AFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred hhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 666677777777766655
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.16 E-value=12 Score=35.25 Aligned_cols=141 Identities=11% Similarity=0.038 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN---EFTYAMMLIM 747 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~ 747 (856)
|.+..++.+.+.+...+|+...+.-.+..+ .|...-..++..++-.|++++|..-++-+-+..|.+ ...|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345566778889999999999877666432 345556678899999999999999998887766543 3455555543
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHH-HHHH-HhcC-CHHHHHHHHHHHHHcCCCC----CHHHHHHHH
Q 003020 748 YKRNGRFEEATRIAKQMRESGLIS-----DLLSYNNV-LGLY-AVDG-RFKDVIGTFKDMVNAAIQP----DDFTFKSLG 815 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l-~~~~-~~~g-~~~~A~~~~~~~~~~g~~p----~~~~~~~l~ 815 (856)
- .+-++...-+..| ++..|... ..+. ++.+ .-+.+..+.+...+.+-.| +.-.+..+.
T Consensus 82 e----------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~~~gg~fawia 151 (273)
T COG4455 82 E----------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGHADGGSFAWIA 151 (273)
T ss_pred H----------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcccCCcchhhhh
Confidence 2 2223333333222 12334332 2222 3333 4444556666666643222 333455555
Q ss_pred HHHHHcC
Q 003020 816 AVLMKCG 822 (856)
Q Consensus 816 ~~~~~~G 822 (856)
..=.+.|
T Consensus 152 DsD~Rlg 158 (273)
T COG4455 152 DSDDRLG 158 (273)
T ss_pred hcccccC
Confidence 5555555
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.79 E-value=88 Score=33.83 Aligned_cols=92 Identities=9% Similarity=-0.066 Sum_probs=67.9
Q ss_pred HHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCC-CHHHHHHHHHHH
Q 003020 177 ALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGG-LKEEAVCWLERM 255 (856)
Q Consensus 177 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 255 (856)
-..+|..+..+ +..|+..|...+..+.+.+.+.+.-.+|.+|+...+. ++..|.........-+ +.+.|+.+|.+.
T Consensus 90 Iv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 90 IVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 34556666555 6779999999999888888899999999999997544 7778887777655544 499999999999
Q ss_pred HhCCCCccHHHHHHHHH
Q 003020 256 NEGGMEPDEVTMGIVVQ 272 (856)
Q Consensus 256 ~~~~~~~~~~~~~~ll~ 272 (856)
++..+. .+..|....+
T Consensus 167 LR~npd-sp~Lw~eyfr 182 (568)
T KOG2396|consen 167 LRFNPD-SPKLWKEYFR 182 (568)
T ss_pred hhcCCC-ChHHHHHHHH
Confidence 887432 3344444333
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=80.36 E-value=20 Score=28.93 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=45.2
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH
Q 003020 725 EIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-DLLSYNNVLGLYAVDGRFK 790 (856)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 790 (856)
.-++.....+|.|......++..+...|++++|++.+-+++..++.. +...-..++.++...|.-+
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 34455555668888888889999999999999999988888876553 3456666777776666644
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=80.35 E-value=20 Score=29.17 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHH
Q 003020 173 SWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWL 252 (856)
Q Consensus 173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 252 (856)
+.++|..+-+|....+. ....+--.-+..+..+|+|++|..+.+.+ +.||...|..+- -.+.|..+.+...+
T Consensus 20 cHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHH
Confidence 68899999999986541 12233333445678899999999988654 578998887764 35778888888888
Q ss_pred HHHHhCC
Q 003020 253 ERMNEGG 259 (856)
Q Consensus 253 ~~~~~~~ 259 (856)
.++-..|
T Consensus 92 ~rla~sg 98 (115)
T TIGR02508 92 NRLAASG 98 (115)
T ss_pred HHHHhCC
Confidence 8887776
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 87.2 bits (215), Expect = 1e-17
Identities = 89/581 (15%), Positives = 190/581 (32%), Gaps = 148/581 (25%)
Query: 37 LEKKIETQTLLNNSNSER-VKRLSKVHN-HSKFDKPNGVVHE---HELKKQSFEQKPHRE 91
L I+T+ + + +++ +++N + F K N V +L++ E +P +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-VSRLQPYLKLRQALLELRPAK- 151
Query: 92 QSKNTWVDVR----IGNERRTDVISAVCVNGEVQTKCSTK--WARYGGC-----IPSMLQ 140
V + G +T V VC++ +VQ K K W C + MLQ
Sbjct: 152 -----NVLIDGVLGSG---KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 141 ALDTVKDLDEALKPWAENLSNKERSIILKEQSSWERALEIFEWFKRQECHELNVIHYNIM 200
L + P + S+ +I L+ S + + + C L ++
Sbjct: 204 KLLYQ------IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--L------LV 249
Query: 201 LRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGM 260
L + + W+ ++ + + + + + D S ++ + +
Sbjct: 250 LLNV-----QN--AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL----DHHSMTL 298
Query: 261 EPDEVTMGIVVQMYKKAGEFQKAEEFFKKW--SSRESLRHGEDTKT------MIGKV--- 309
PDE + K+ + L E T +I +
Sbjct: 299 TPDE------------------VKSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRD 339
Query: 310 -----ENGSHVNG----SLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGI-VPTTVTF 359
+N HVN ++ + N L + + ++ + + + +PT +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVL-----EPAEYRKMFDRLS-VFPPSAHIPTIL-- 391
Query: 360 NTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKE 419
+ + + ++V + + +LH + L+ K IS+ S Y +
Sbjct: 392 ---LSLIWFDVIKSDVMVV---VNKLH----KYS---LVEKQPKESTISIPSIYLELKVK 438
Query: 420 ANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEK 479
E + +R+++ Y+I + + + +D Y S + E+
Sbjct: 439 LENEYAL--HRSIVDHYNIPKTFDSDDLIPPYLDQ-------YFYSHIGHHLKNIEHPER 489
Query: 480 SWLWFR------RFHLAGDMSSEGYSANIDGYGERG-HVLEAERAFICCQEGKKLTVLVF 532
L FR RF L + + + N G L+ + +IC + K +
Sbjct: 490 MTL-FRMVFLDFRF-LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK------Y 541
Query: 533 NVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQI 573
+V A + D + Y L++I
Sbjct: 542 ERLVNA------------ILDFLPKIEENLICSKYTDLLRI 570
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 1e-10
Identities = 89/600 (14%), Positives = 169/600 (28%), Gaps = 190/600 (31%)
Query: 373 AEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKI-------SMASRYFWKMKEANLEPD 425
E+D +I + T + L +K +++ + Y + M E
Sbjct: 49 EEIDHIIMSK-----DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 426 IVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEA-----GML--E 478
S T +Y R+ ++ ++ + L+ + AL + G+L
Sbjct: 104 QPSMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 479 KSWL-------------------W--FRRFHLAGDM----------SSEGYSANIDG--- 504
K+W+ W + + + +++ D
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 505 YGERGHVLEAE-RAFICCQEGKK-LTVL--VFNV-MVKAYGMG-------RNYDKACNLF 552
R H ++AE R + + + L VL V N A+ + R L
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 553 DSMTSH--------GAVPDK--------------------CSYNSLIQILAGADLPHMAK 584
+ T+H PD+ + N + +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 585 R--YLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAE--EVYKDMIRFNVEPDVVV-YGV 639
+ + +C +I L LE AE +++ + F P + +
Sbjct: 343 TWDNWKHV-------NCDKLTTIIE--SSLNVLEPAEYRKMFDRLSVF--PPSAHIPTIL 391
Query: 640 LINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLE 699
L + DV D M N + SL++ K + T +
Sbjct: 392 LSLIWFDV-------IKSDVMVVV----NKLHKYSLVEKQPK-------ESTISI----- 428
Query: 700 ASPDVY---TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFT------YAMMLIMY-- 748
P +Y + RS+V + I K D+++ Y I +
Sbjct: 429 --PSIYLELKVKLENEYALHRSIVDH----YNIPKTF-DSDDLIPPYLDQYFYSHIGHHL 481
Query: 749 ---KRNGRFEEATR-------IAKQMRESGL-------ISDLLSYNNVLGLYAVDGRFKD 791
+ R + +++R I + L L Y D
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL---QQLKFY--KPYICD 536
Query: 792 VIGTFKDMVNAAIQPDDFTFKSLGAVLMKCGLELTRKKNA---QSGLQAWMSTLSSVIEE 848
++ +VNA + DF L K L K + L M+ ++ EE
Sbjct: 537 NDPKYERLVNAIL---DF--------LPKIEENLICSKYTDLLRIAL---MAEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 8e-10
Identities = 111/741 (14%), Positives = 207/741 (27%), Gaps = 258/741 (34%)
Query: 118 GEVQTKCSTKWARYGGCIPSMLQALDTVKDLD-----EALKPWAENLSNKERSIILKEQS 172
GE Q + Y + A V + D + K LS +E I+ +
Sbjct: 12 GEHQYQ-------YKDILSVFEDAF--VDNFDCKDVQDMPKSI---LSKEEIDHIIMSKD 59
Query: 173 SWERALEIFEWFKRQ----------ECHELN------VIHYNIMLRTLGKARKWSYVQSL 216
+ L +F + E +N I ++ L
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 217 WDEMSV--KGIVPINSTYGTL---------------------------IDVCSKGGLKEE 247
+++ V K V Y L +DVC ++ +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 248 ---AVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKT 304
+ WL N E + ++ ++ + W+SR H + K
Sbjct: 180 MDFKIFWL---NLKNCNSPETVLEMLQKLLYQ---------IDPNWTSRSD--HSSNIKL 225
Query: 305 MIGKVENGSHVNGSLSSYTY-NTLI---DTYGKAGQLKEASETFA---QML---REGIVP 354
I ++ + L S Y N L+ + +A F ++L R V
Sbjct: 226 RIHSIQA--ELRRLLKSKPYENCLLVLLNVQNA-----KAWNAFNLSCKILLTTRFKQVT 278
Query: 355 TTVTFNTMIHIYGNNDQL----AEVDSLIKK-----MEELHCPPDTRTYN---ILIFLHA 402
++ T HI ++ + EV SL+ K ++L P + T N + I +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--PREVLTTNPRRLSIIAES 336
Query: 403 KNDKISMASRY----FWKMKEA------NLEPDIVSYRTLLYAYSIRRMVCEAEELISEM 452
D ++ + K+ LEP YR + S+
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE--YRKMFDRLSV-------------- 380
Query: 453 DGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVL 512
+I +L +W D+ + V+
Sbjct: 381 ----FPPS---------AHIPTILLSL--IW-------FDVIKS----------DVMVVV 408
Query: 513 -EAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLI 571
+ + + ++ K+ T+ + L + H ++ D YN
Sbjct: 409 NKLHKYSLVEKQPKESTI---------SIPSIYLELKVKLENEYALHRSIVDH--YN--- 454
Query: 572 QILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMK--LGQLEMAEE------VYK 623
I D + YL + Y S++ L +E E V+
Sbjct: 455 -IPKTFDSDDLIPPYLDQ------------Y---FYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 624 DMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVG 683
D RF +E + NA + N Q +K Y
Sbjct: 499 DF-RF-LEQKIRHDSTAWNASGSILNTLQ-----Q-----------------LKFYKP-- 532
Query: 684 YLKEAQETY-KLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYA 742
Y+ + Y +L+ ++ N + Y+ ++R A
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYT--DLLRIA------------------- 571
Query: 743 MMLIMYKRNGRFEEATRIAKQ 763
+M + FEEA + ++
Sbjct: 572 ---LMAEDEAIFEEAHKQVQR 589
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.5 bits (189), Expect = 1e-14
Identities = 29/311 (9%), Positives = 72/311 (23%), Gaps = 28/311 (9%)
Query: 132 GGCIPSMLQALDTVKDLDEALKPWAENLSNKERSIILKEQSSWERALEIFEWFKRQECHE 191
+ WA+ L K++ + L++ +
Sbjct: 3 HHHHHHRKVQMGAKDATPVPCGRWAKIL-EKDKRTQQMRMQRLKAKLQMPFQSGEFKALT 61
Query: 192 LNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCW 251
+ R L K P L+ +
Sbjct: 62 R---RLQVEPRLLSKQMAGCLEDC----TRQAPESPWEEQLARLLQEAPGKLSLDVEQAP 114
Query: 252 LERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVEN 311
+ ++ + + + + + A + R
Sbjct: 115 SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL--------- 165
Query: 312 GSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQ 371
YN ++ + + G KE + G+ P +++ + G DQ
Sbjct: 166 ----------DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215
Query: 372 LAE-VDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYR 430
A ++ +++M + +L+ + + + P V+
Sbjct: 216 DAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTS 275
Query: 431 TLLYAYSIRRM 441
LL +
Sbjct: 276 KLLRDVYAKDG 286
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.5 bits (189), Expect = 1e-14
Identities = 24/205 (11%), Positives = 61/205 (29%), Gaps = 4/205 (1%)
Query: 548 ACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVIS 607
A L D P + L+Q G + + + +A L A
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 608 SYMKLGQLEMAEEV---YKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAG 664
+ QL +A + + + + +Y ++ +A G K+ ++ AG
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 665 LPPNAVIYNSLIKLYTKVGYLKEAQETY-KLLRSLEASPDVYTSNCMIDLYSERSMVRQA 723
L P+ + Y + ++ + E + + + ++ ++++
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 724 EEIFEIMKKKGDANEFTYAMMLIMY 748
++ L+
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRD 280
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 70.2 bits (170), Expect = 2e-12
Identities = 25/180 (13%), Positives = 48/180 (26%), Gaps = 5/180 (2%)
Query: 640 LINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLE 699
L+ ++ Q+ A L + K L A +
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157
Query: 700 AS---PDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG-DANEFTYAMMLIMYKRNGRFE 755
+ N ++ ++ + ++ + ++K G + +YA L R +
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
Query: 756 EA-TRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSL 814
R +QM + GL L +L K V P L
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 68.7 bits (166), Expect = 6e-12
Identities = 33/257 (12%), Positives = 76/257 (29%), Gaps = 12/257 (4%)
Query: 498 YSANIDGYGERGHVLEAERAFICC----QEGKKLTVLVFNVMVKAYGMGRNYDKACNLFD 553
A + A + Q+ K LT+ ++N ++ + + + +
Sbjct: 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189
Query: 554 SMTSHGAVPDKCSYNSLIQILAGAD-LPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKL 612
+ G PD SY + +Q + D +R L +M + GL + ++S +
Sbjct: 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249
Query: 613 GQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIY 672
L+ +V P V L+ P +
Sbjct: 250 TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHL-------PLKTLQC 302
Query: 673 NSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKK 732
+L+ ++ K + + + E+++ R E +++
Sbjct: 303 LFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLER 362
Query: 733 KGDANEFTYAMMLIMYK 749
+ F+ L +
Sbjct: 363 EVYEGRFSLYPFLCLLD 379
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.0 bits (146), Expect = 1e-09
Identities = 25/173 (14%), Positives = 49/173 (28%), Gaps = 5/173 (2%)
Query: 653 AQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMID 712
A D A P L++ L Q + S
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 713 LYSERSMVRQAEEIFEIMKKKGDANEF----TYAMMLIMYKRNGRFEEATRIAKQMRESG 768
+ A + + + + Y +++ + R G F+E + ++++G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 769 LISDLLSYNNVLGLYAVDGRFKDVIGT-FKDMVNAAIQPDDFTFKSLGAVLMK 820
L DLLSY L + I + M ++ L + +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.4 bits (121), Expect = 1e-06
Identities = 20/164 (12%), Positives = 51/164 (31%), Gaps = 11/164 (6%)
Query: 696 RSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG-DANEFTYAMMLIMYKRNGRF 754
R SP ++ + + + + + +
Sbjct: 84 RQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQL 143
Query: 755 EEATRI---AKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTF 811
A + R+ + L YN V+ +A G FK+++ + +A + PD ++
Sbjct: 144 PLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203
Query: 812 KSLGAVLMKCGLELTRKKNAQSGLQAWMSTLSSVIEECDDDYNN 855
A ++C + R+ ++ + +S + +
Sbjct: 204 ----AAALQC---MGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.4 bits (116), Expect = 5e-06
Identities = 17/185 (9%), Positives = 49/185 (26%), Gaps = 4/185 (2%)
Query: 338 KEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNIL 397
+ A + P ++ L + + + +
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 398 IFLHAKNDKISMASRY---FWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDG 454
D++ +A ++ + Y ++ ++ + E ++ +
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 455 GGLEIDEYTQSALTRMYIEAGMLEKS-WLWFRRFHLAGDMSSEGYSANIDGYGERGHVLE 513
GL D + +A + + + G ++A + +R VL+
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 514 AERAF 518
A
Sbjct: 254 AVHKV 258
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 22/164 (13%), Positives = 62/164 (37%), Gaps = 13/164 (7%)
Query: 609 YMKLGQLEMAEEVYKDMIRFNVEPDVVV----YGVLINAFADVGNVKQAQSYFD-AMESA 663
+ + ++A+E Y+ + + YG + ++A A +
Sbjct: 81 FQTEMEPKLADEEYRKALASD--SRNARVLNNYG---GFLYEQKRYEEAYQRLLEASQDT 135
Query: 664 GLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD-VYTSNCMIDLYSERSMVRQ 722
P + ++ +L + ++ +A+E ++ +SL + + + M DL +
Sbjct: 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFE--KSLRLNRNQPSVALEMADLLYKEREYVP 193
Query: 723 AEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRE 766
A + +++ + G N + + + + K + A Q++
Sbjct: 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 7e-09
Identities = 28/196 (14%), Positives = 60/196 (30%), Gaps = 15/196 (7%)
Query: 609 YMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQS---YFDAMESAGL 665
Y L + A+E YK+ + + + + L++ + + +
Sbjct: 210 YTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDA 268
Query: 666 PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEE 725
+Y + + L+ A++ + LE S D+ C D RS
Sbjct: 269 AFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL--LCKADTLFVRSRFIDVLA 326
Query: 726 IFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS----DLLSYNNVLG 781
I + + N Y + L +G + I+ L+ +++ V
Sbjct: 327 ITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISND-----LVDRHPEKAVTWLAVGI 381
Query: 782 LYAVDGRFKDVIGTFK 797
Y + + F
Sbjct: 382 YYLCVNKISEARRYFS 397
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 64/530 (12%), Positives = 150/530 (28%), Gaps = 104/530 (19%)
Query: 246 EEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSR------------ 293
+ A E++ + + + + Q+Y G++ +A+ K
Sbjct: 101 KCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158
Query: 294 ---------ESLRHGEDTKTMIGKVENG-----SHVNGSLSSYTYNTLIDTYGKAGQLKE 339
+L +T +N L + Y
Sbjct: 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218
Query: 340 ASETFAQMLREGIVPTTV-TFNTMI--HIYGNNDQLAEVDSLIKKMEELHCPPDTRT-YN 395
A E + + L + F+ ++ H+ +++ V L R+ Y
Sbjct: 219 AKECYKEALM--VDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276
Query: 396 ILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGG 455
+ + + D++ A Y LE +R + + +++
Sbjct: 277 LKLNKTSHEDELRRAEDYL--SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI--- 331
Query: 456 GLEIDEYTQSALTRM---YIEAGMLEKSWLWFRRFHLAGDM---SSEGYSA--NIDGYGE 507
LEID Y E+G K + + D + + A Y
Sbjct: 332 -LEIDPYNLDVYPLHLASLHESGEKNKL---YLISNDLVDRHPEKAVTWLAVGIY--YLC 385
Query: 508 RGHVLEAERAFICCQEGKKLTVL------VFNVMVKAYGMGRNYDKACNLFDSMTSHGAV 561
+ EA R F K + + + ++ + +D+A +
Sbjct: 386 VNKISEARRYF------SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAIS----------- 428
Query: 562 PDKCSYNSLIQILAGADLPH----MAKRYLRKMQEAGLV---------SDCIPYCAVISS 608
+Y + ++ G LP+ M L + A D + +
Sbjct: 429 ----AYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVV 484
Query: 609 YMKLGQLEMAEEVYKDMIRFNVEPDVV------VYGVLINAFADVGNVKQAQSYFD-AME 661
++ A +++ + + + L +A+ + A + +
Sbjct: 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544
Query: 662 SAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMI 711
+ +A ++ ++ +Y A SL SP+ ++ ++
Sbjct: 545 LS--TNDANVHTAIALVYLHKKIPGLAITHLH--ESLAISPNEIMASDLL 590
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 13/164 (7%)
Query: 609 YMKLGQLEMAEEVYKDMIRFNVEPDVVV----YGVLINAFADVGNVKQAQSYFD-AMESA 663
Y L + A+E ++ + PD YG + + ++ +YFD A+
Sbjct: 52 YQYLKVNDKAQESFRQALSIK--PDSAEINNNYGWFL--CGRLNRPAESMAYFDKALADP 107
Query: 664 GLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD-VYTSNCMIDLYSERSMVRQ 722
P + + K G A+ K RSL A P + +
Sbjct: 108 TYPTPYIANLNKGICSAKQGQFGLAEAYLK--RSLAAQPQFPPAFKELARTKMLAGQLGD 165
Query: 723 AEEIFE-IMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMR 765
A+ F+ + + + K G + A Q++
Sbjct: 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 7e-07
Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 20/162 (12%)
Query: 609 YMKLGQLEMAEEVYKDMIRFNVEP-DVVVYGVLINAFADVGNVKQAQSYFD-AME----- 661
Y ++AE + + P D V + G K A+ +F A+E
Sbjct: 169 YGLTNNSKLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI 226
Query: 662 --SAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD---VYTSNCMIDLYSE 716
+ + N+L + K+ EA + ++ ++L P Y + + ++S
Sbjct: 227 GNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR--QALVLIPQNASTY--SAIGYIHSL 282
Query: 717 RSMVRQAEEIFEI-MKKKGDANEFTYAMMLIMYKRNGRFEEA 757
A + F + + D + F+ M+ + EA
Sbjct: 283 MGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDSEA 323
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 44/226 (19%), Positives = 82/226 (36%), Gaps = 27/226 (11%)
Query: 608 SYMKLGQLEMAEEVYKDMIRFNVEPD-VVVYGVLINAFADVGNVKQAQSYFD-AMESAGL 665
+ G E AE + R PD V +L + + ++ + A++
Sbjct: 8 REYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-- 63
Query: 666 PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTS-NCMIDLYSERSMVRQAE 724
P A Y++L +Y + G L+EA E Y+ +L PD + + A
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYR--HALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 725 EIFE--IMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS----DLLSYNN 778
+ + + + + + K GR EEA + I ++++N
Sbjct: 122 QAYVSALQYNPDLYC--VRSDLGNLLKALGRLEEAKACYLKA-----IETQPNFAVAWSN 174
Query: 779 VLG-LYAVDGRFKDVIGTFKDMVNAAIQPDDF-TFKSLGAVLMKCG 822
LG ++ G I F+ V + P+ + +LG VL +
Sbjct: 175 -LGCVFNAQGEIWLAIHHFEKAV--TLDPNFLDAYINLGNVLKEAR 217
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 13/154 (8%)
Query: 609 YMKLGQLEMAEEVYKDMIRFNVEPDVV-VYGVLINAFADVGNVKQA-QSYFDAMESAGLP 666
Y + GQL+ A E Y+ +R PD + Y L A G+++ A Q+Y A++ P
Sbjct: 77 YKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--P 132
Query: 667 PNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTS-NCMIDLYSERSMVRQAEE 725
+ + L L +G L+EA+ Y +++E P+ + + + +++ + + A
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYL--KAIETQPNFAVAWSNLGCVFNAQGEIWLAIH 190
Query: 726 IFE--IMKKKGDANEFTYAMMLIMYKRNGRFEEA 757
FE + + Y + + K F+ A
Sbjct: 191 HFEKAVTLDPNFLD--AYINLGNVLKEARIFDRA 222
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 38/221 (17%), Positives = 99/221 (44%), Gaps = 19/221 (8%)
Query: 609 YMKLGQLEMAEEVYKDMIRFNVEPD-VVVYGVLINAFADVGNVKQAQSYFD-AMESAGLP 666
+ G++ +A ++ + + P+ + Y L N + +A + + A+ + P
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--P 234
Query: 667 PNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTS-NCMIDLYSERSMVRQAEE 725
+AV++ +L +Y + G + A +TY+ R++E P + + + E+ V +AE+
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYR--RAIELQPHFPDAYCNLANALKEKGSVAEAED 292
Query: 726 IFE--IMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDL-LSYNNVLGL 782
+ + A+ + + + + G EEA R+ ++ E + + +++N+ +
Sbjct: 293 CYNTALRLCPTHAD--SLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASV 348
Query: 783 YAVDGRFKDVIGTFKDMVNAAIQPDDF-TFKSLGAVLMKCG 822
G+ ++ + +K+ + I P + ++G L +
Sbjct: 349 LQQQGKLQEALMHYKEAI--RISPTFADAYSNMGNTLKEMQ 387
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 28/206 (13%), Positives = 62/206 (30%), Gaps = 35/206 (16%)
Query: 605 VISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADV----GNVKQAQSYFD-A 659
+ A + + IR N + + + +L + + + + A
Sbjct: 181 ASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEA 239
Query: 660 MESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTS-NCMIDLYSER- 717
+E A P + S K Y + +A E K ++LE P+ + Y +
Sbjct: 240 LEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLK--KALEYIPNNAYLHCQIGCCYRAKV 295
Query: 718 ------------------SMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATR 759
++ A + + D +++ ++ ++EEA
Sbjct: 296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEY 355
Query: 760 -----IAKQMRESGLISDLLSYNNVL 780
+K++ L Y N
Sbjct: 356 YFQKEFSKELTPVAKQLLHLRYGNFQ 381
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 30/289 (10%), Positives = 79/289 (27%), Gaps = 33/289 (11%)
Query: 575 AGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPD- 633
L + + + + GQ E A E + +
Sbjct: 27 GENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA 86
Query: 634 -------VVVYGVLINAFADVGNVKQAQSYFDAME-------SAGLPPNAVIYNSLIKLY 679
+V +G + +G + Q Y D ++ S + +
Sbjct: 87 DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTR 146
Query: 680 TKVG--YLKEAQETYKLLRSLEASPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA 736
K G + A+ ++ ++LE P ++ + ++ + +++
Sbjct: 147 LKCGGNQNERAKVCFE--KALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204
Query: 737 N-EFTYAMMLI------MYKRNGRFEEATRIAKQMRESGLISDLLS-YNNVLGLYAVDGR 788
N + Y +L+ M + E ++ ++ E + + Y
Sbjct: 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE--KAPGVTDVLRSAAKFYRRKDE 262
Query: 789 FKDVIGTFKDMVNAAIQPDD-FTFKSLGAVLMKCGLELTRKKNAQSGLQ 836
I K + P++ + +G ++ + +
Sbjct: 263 PDKAIELLKKALE--YIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 3e-06
Identities = 22/202 (10%), Positives = 61/202 (30%), Gaps = 10/202 (4%)
Query: 609 YMKLGQLEMAEEVYKDMIRFNVEP-DVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPP 667
+ + + +V+ + + + + N A +
Sbjct: 75 LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGD------ 128
Query: 668 NAVIYNSLIKLYTKVGYLKEAQETYKLLRSL-EASPDVYTSNCMIDLYSERSMVRQAEEI 726
+ +++ K+ L A++ K ++ E + + + L + ++ A I
Sbjct: 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYI 188
Query: 727 FEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVD 786
F+ M K + GR+E A + ++ + + N++ L
Sbjct: 189 FQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHL 247
Query: 787 GRFKDVIGTFKDMVNAAIQPDD 808
G+ +V + +
Sbjct: 248 GKPPEVTNRYLSQL-KDAHRSH 268
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 4e-06
Identities = 25/169 (14%), Positives = 56/169 (33%), Gaps = 22/169 (13%)
Query: 607 SSYMKLGQLEMAEEVYKDMIRFN---------------VEPDVVVYGVLINAFADVGNVK 651
S+ ++ GQ A ++ I N E + L A+ N
Sbjct: 12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYD 71
Query: 652 QAQSYFD-AMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD-VYTSNC 709
+A ++ ++ A P N + ++ G K+A Y+ + L+ D + +
Sbjct: 72 KAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYE--KILQLEADNLAANIF 127
Query: 710 MIDLYSERS-MVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEA 757
+ + Y + ++ E ++ + R+E+A
Sbjct: 128 LGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKA 176
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 36/219 (16%), Positives = 69/219 (31%), Gaps = 40/219 (18%)
Query: 609 YMKLGQLEMAEEVYKDMIRFNVEPD-VVVYGVLINAFADVGNVKQA-QSYFDAMESAGLP 666
++ G L A +++ ++ + P + + L A+ A + +E P
Sbjct: 74 RLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK--P 129
Query: 667 PNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEI 726
N +L +T ++A E + L +P A +
Sbjct: 130 DNQTALMALAVSFTNESLQRQACEILR--DWLRYTPA------------------YAHLV 169
Query: 727 FEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLL---SYNNVLG-L 782
+ G A +L + F E + L + LG L
Sbjct: 170 TPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR--LDPTSIDPDVQCG-LGVL 226
Query: 783 YAVDGRFKDVIGTFKDMVNAAIQ--PDDF-TFKSLGAVL 818
+ + G + + F AA+ P+D+ + LGA L
Sbjct: 227 FNLSGEYDKAVDCF----TAALSVRPNDYLLWNKLGATL 261
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 9e-06
Identities = 34/223 (15%), Positives = 64/223 (28%), Gaps = 42/223 (18%)
Query: 609 YMKLGQLEMAEEVYKDMIRFNVEPD-VVVYGVLINAFADVGNVKQA-QSYFDAMESAGLP 666
+KL L A ++ + + P+ + L A+ A + A L
Sbjct: 31 MLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARM---LD 85
Query: 667 PN-AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEE 725
P ++ +L +T A + + L + P L S
Sbjct: 86 PKDIAVHAALAVSHTNEHNANAALASLR--AWLLSQPQYE------QLGSVNLQADV--- 134
Query: 726 IFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS--DLLSYNNVLG-L 782
D ++ + + E + E ++ D + + LG L
Sbjct: 135 ---------DIDDLNVQSEDFFFAAPNEYRECRTLLHAALE---MNPNDAQLHAS-LGVL 181
Query: 783 YAVDGRFKDVIGTFKDMVNAAIQ--PDDF-TFKSLGAVLMKCG 822
Y + + A++ PDD + LGA L
Sbjct: 182 YNLSNNYDSAAANL----RRAVELRPDDAQLWNKLGATLANGN 220
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 6/150 (4%)
Query: 609 YMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPN 668
A E K I P V Y + AD + + +YFD N
Sbjct: 247 KFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNN 303
Query: 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD-VYTSNCMIDLYSERSMVRQAEEIF 727
+ +Y ++ + +A + + ++ E P+ ++ + L + E +F
Sbjct: 304 SSVYYHRGQMNFILQNYDQAGKDFD--KAKELDPENIFPYIQLACLAYRENKFDDCETLF 361
Query: 728 EIMKKKGDANEFTYAMMLIMYKRNGRFEEA 757
K+K + F++A
Sbjct: 362 SEAKRKFPEAPEVPNFFAEILTDKNDFDKA 391
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 49/226 (21%), Positives = 79/226 (34%), Gaps = 45/226 (19%)
Query: 607 SSYMKLGQLEMAEEVYKDMIRFNVE------PDV-VVYGVLINAFADVGNVKQAQSYFD- 658
Y G+ E+A + K + + PDV + +L + D K A + +
Sbjct: 35 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLND 94
Query: 659 --AMESAGLPPN----AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEAS--------PDV 704
A+ L + A N+L LY K G KEA+ K R+LE PDV
Sbjct: 95 ALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK--RALEIREKVLGKDHPDV 152
Query: 705 YTS-NCMIDLYSERSMVRQAEEIFE----IMKKK-GD-----ANEFTYAMMLIMYKRNGR 753
N + L + + E ++ I + K G A T + Y + G+
Sbjct: 153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAK--TKNNLASCYLKQGK 210
Query: 754 FEEA----TRIAKQMRESGLISD----LLSYNNVLGLYAVDGRFKD 791
F++A I + E S + + G+ KD
Sbjct: 211 FKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD 256
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 21/156 (13%), Positives = 44/156 (28%), Gaps = 12/156 (7%)
Query: 608 SYMKLGQLEMAEEVYKDMIRFNVEPD-VVVYGVLINAFADVGNVKQAQSYFDAMESAGL- 665
K A EV+ + + +Y + ++ AQ + S
Sbjct: 12 FLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA 69
Query: 666 -PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMI-DLYSERSMVRQA 723
+ + K+ K G A + Y+ +++ I + + A
Sbjct: 70 TKAKSADFEYYGKILMKKGQDSLAIQQYQ--AAVDRDTTRLDMYGQIGSYFYNKGNFPLA 127
Query: 724 EEIFE--IMKKKGDANEFTYAMMLIMYKRNGRFEEA 757
+ E I D + + Y N + +A
Sbjct: 128 IQYMEKQIRPTTTDPK--VFYELGQAYYYNKEYVKA 161
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 9e-05
Identities = 25/165 (15%), Positives = 55/165 (33%), Gaps = 21/165 (12%)
Query: 608 SYMKLGQLEMAEEVYKDMIRFNVEPD-VVVYGVLINAFADVGNVKQA-QSYFDAMESAGL 665
+K G L + + I + P + L A+ N + A + +E
Sbjct: 74 KRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-- 129
Query: 666 PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD-----------VYTSNCMIDLY 714
P N +L YT + ++A E K ++ +P + M
Sbjct: 130 PNNLKALMALAVSYTNTSHQQDACEALK--NWIKQNPKYKYLVKNKKGSPGLTRRMSKSP 187
Query: 715 SERSMVRQAEEIFE--IMKKKGDANEFTYAMMLIMYKRNGRFEEA 757
+ S++ +E++ + + + +++ +G F A
Sbjct: 188 VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRA 232
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 20/231 (8%), Positives = 62/231 (26%), Gaps = 23/231 (9%)
Query: 608 SYMKLGQLEMAEEVYKDMIRFNVEPD-VVVYGVLINAFADVGNVKQAQSYFD-AMESAGL 665
+ A + Y+ I + P+ V Y + + G++++ + A+E +
Sbjct: 34 HFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALE---I 88
Query: 666 PPN-AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAE 724
P+ + +G +A +L + ++++M E
Sbjct: 89 KPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNE 148
Query: 725 EIFEIMKKKGDAN-----------EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDL 773
+ + + F + + + ++ A + + +
Sbjct: 149 NLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD 208
Query: 774 LSYNNVLGLYAVD-GRFKDVIGTFKDMVNAAIQPDDF-TFKSLGAVLMKCG 822
Y L + ++ + ++ + G
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTV--DDPLRENAALALCYTGIFHFLKN 257
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 19/159 (11%), Positives = 43/159 (27%), Gaps = 10/159 (6%)
Query: 609 YMKLGQLEMAEEVYKDMIRFNVEPD-VVVYGVLINAFADVGNVKQAQSYFD-AMESAGLP 666
+ +G E + + + P L +A A ++A P
Sbjct: 33 ELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA--P 88
Query: 667 PNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD-VYTSNCMIDLYSERSMVRQAEE 725
+ I L G + A Y R+ + P+ Y + +++ R +
Sbjct: 89 EHPGIALWLGHALEDAGQAEAAAAAYT--RAHQLLPEEPYITAQLLNWRRRLCDWRALDV 146
Query: 726 IFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQM 764
+ ++ + + E A+
Sbjct: 147 LSAQVRAAVAQGVGAVEPFAFLS-EDASAAEQLACARTR 184
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 602 YCAVISSYMKLGQLEMAEEVYKDMIRFNVEPD-VVVYGVLINAFADVGNVKQA-QSYFDA 659
Y G LE A V KD R N P ++ +A +G +A S A
Sbjct: 87 YRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQA 144
Query: 660 MESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD 703
+ L I ++L +LY +G L EA Y ++LE +P
Sbjct: 145 LA---LEDTPEIRSALAELYLSMGRLDEALAQYA--KALEQAPK 183
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 32/202 (15%), Positives = 61/202 (30%), Gaps = 26/202 (12%)
Query: 609 YMKLGQLEMAEEVYKDMIRF----NVEPDVVVYGVLINAFADVGNVKQAQSYFDAMES-- 662
+ G + AE + K + +V VL G + ++ + E
Sbjct: 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 83
Query: 663 --AGLPPNAVI-YNSLIKLYTKVGYLKEAQETY-KLLRSLEA-----SPDV-YTSNCMID 712
+ A+ ++ G+L+ A ET K + + P +
Sbjct: 84 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ 143
Query: 713 LYSERSMVRQAEEIF----EIMKKKGDANEFTYAMMLI-MYKRNGRFEEATRIAKQ---- 763
L + + +AE E++ + MLI G + A +
Sbjct: 144 LLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203
Query: 764 MRESGLISDLLSY-NNVLGLYA 784
+ SD +S N V +Y
Sbjct: 204 LGNGKYHSDWISNANKVRVIYW 225
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 23/224 (10%), Positives = 51/224 (22%), Gaps = 25/224 (11%)
Query: 609 YMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPN 668
L ++ V E VV + V+ ++ GL P
Sbjct: 116 KQALETVQRLLPVLCQAHGLTPE-QVVAIASHDGGKQALETVQALLPVLC--QAHGLTPE 172
Query: 669 -AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD-VYTSNCMIDLYSERSMVRQAEEI 726
V S + ++ ++ +P V V++ +
Sbjct: 173 QVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASNGGGKQALETVQRLLPV 230
Query: 727 F----EIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDL-LSYNNVLG 781
+ ++ A A + + + + GL ++ + G
Sbjct: 231 LCQAHGLTPQQVVA----IASNGGGKQALETVQRL--LPVLCQAHGLTPQQVVAIASNSG 284
Query: 782 LYAVDGRFKDVIGTFKDMVNAAI--QPDDF-TFKSLGAVLMKCG 822
+ ++ A P S G
Sbjct: 285 GKQALETVQRLLPVL----CQAHGLTPQQVVAIASNGGGKQALE 324
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 6e-04
Identities = 41/222 (18%), Positives = 71/222 (31%), Gaps = 41/222 (18%)
Query: 609 YMKLGQLEMAEEVYKDMIRFNVE------PDVVV-YGVLINAFADVGNVKQAQSYFD--- 658
L A + K + + PDV +L + D K+A +
Sbjct: 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDAL 70
Query: 659 AMESAGLPPN----AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEAS--------PDVYT 706
A+ L + A N+L LY K G KEA+ K R+LE PDV
Sbjct: 71 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK--RALEIREKVLGKFHPDVAK 128
Query: 707 S-NCMIDLYSERSMVRQAEEIFE----IMKKKGDANEFTYAMML----IMYKRNGRFEEA 757
N + L + + E + I + ++ A Y + G++++A
Sbjct: 129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188
Query: 758 TRIAKQ----MRESGLISD----LLSYNNVLGLYAVDGRFKD 791
+ K+ E S + + + +D
Sbjct: 189 ETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRD 230
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 8e-04
Identities = 39/322 (12%), Positives = 99/322 (30%), Gaps = 48/322 (14%)
Query: 127 KWARYGGCIPSMLQALDTVKDLDEALKPWAENLSNKERSIILKEQSSWERALEIFE---- 182
+ + G P++ + L+T++ + L + S R + +Q + A+ +
Sbjct: 70 EPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEK 129
Query: 183 -WFKRQECHELNVIHYNI--MLRTLGKARK--WSYVQSLWDEMSVKGI---VPINSTYGT 234
+ E H+ + + + + +Q+L ++ + +
Sbjct: 130 ELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL--DIYQNHPLYSIRTIQSLFV 187
Query: 235 LIDVCSKGGLKEEAV----CWLERMNEGGMEPDEVT----MGIVVQMYKKAGEFQKAEEF 286
+ ++A+ LE + + + Y ++G+ Q A E
Sbjct: 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANS---YDRSGDDQMAVEH 244
Query: 287 FKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQ 346
F+K + + + L L T KAGQ ++A + +
Sbjct: 245 FQK-----AAKVSREK-------------VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEE 286
Query: 347 ML----REGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDT-RTYNILIFLH 401
L F + +Y ++ L+ E+ + +
Sbjct: 287 GLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346
Query: 402 AKNDKISMASRYFWKMKEANLE 423
+ A+ ++ K+ +A +
Sbjct: 347 ESSCHFEQAAAFYRKVLKAQED 368
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 856 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.72 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.71 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.71 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.69 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.67 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.66 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.64 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.64 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.63 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.62 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.62 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.62 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.59 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.58 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.58 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.54 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.54 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.53 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.5 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.49 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.48 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.45 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.44 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.44 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.44 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.42 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.4 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.39 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.38 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.33 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.31 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.29 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.29 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.28 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.25 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.23 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.22 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.21 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.21 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.19 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.19 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.18 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.16 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.16 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.16 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.15 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.15 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.13 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.13 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.12 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.12 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.1 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.09 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.08 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.06 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.05 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.05 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.04 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.03 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.01 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.01 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.98 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.98 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.97 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.95 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.95 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.94 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.93 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.92 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.92 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.92 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.89 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.89 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.89 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.88 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.86 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.86 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.84 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.84 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.83 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.83 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.82 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.82 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.8 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.79 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.78 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.78 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.77 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.76 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.75 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.75 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.74 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.74 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.73 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.73 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.73 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.71 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.7 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.7 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.7 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.69 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.69 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.68 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.67 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.67 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.66 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.63 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.61 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.61 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.6 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.59 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.59 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.59 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.58 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.57 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.56 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.54 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.54 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.53 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.51 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.48 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.47 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.45 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.45 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.45 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.45 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.44 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.44 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.44 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.42 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.41 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.41 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.41 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.4 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.39 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.37 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.35 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.29 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.27 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.27 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.27 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.26 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.23 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.17 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.15 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.14 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.13 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.13 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.07 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.04 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.03 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.0 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.97 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.95 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.87 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.78 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.67 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.61 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.54 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.52 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.52 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.5 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.35 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.2 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.09 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.08 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.99 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.98 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.83 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.81 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.75 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.64 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.62 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.62 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.48 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.1 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.84 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.78 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.66 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.13 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.93 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.91 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.91 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.52 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.32 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.26 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.11 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.04 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.32 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.11 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.94 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.33 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.9 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.02 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.83 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.16 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.63 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.49 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 85.91 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 85.57 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 85.47 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 83.97 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.8 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 82.79 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 82.39 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 81.88 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.13 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=383.65 Aligned_cols=521 Identities=10% Similarity=-0.005 Sum_probs=317.6
Q ss_pred HhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHH
Q 003020 169 KEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEA 248 (856)
Q Consensus 169 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 248 (856)
...|....+...|+.+. .+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|
T Consensus 64 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS-----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccCccCCCCCccccch-----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHH
Confidence 34455555555555332 35678889999999999999999999988885 456778888888899999999999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhcc----CCcCCCCcCHhHH
Q 003020 249 VCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVEN----GSHVNGSLSSYTY 324 (856)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 324 (856)
+.+|+++... +++..+++.++.+|.+.|++++|..+|++..... ...... ......+.+..+|
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 203 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR-----------KDEKNANKLLMQDGGIKLEASMC 203 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------------CCCSSCCHHHHHH
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcc-----------ccccccccccccccccchhHHHH
Confidence 9999887654 5677888888888888999999888887432100 000000 0000112234455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 003020 325 NTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKN 404 (856)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 404 (856)
+.++.+|.+.|++++|++.|++|.+.+.. +...+..+...+...+..+.+.
T Consensus 204 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~---------------------------- 254 (597)
T 2xpi_A 204 YLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDL---------------------------- 254 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHH----------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHH----------------------------
Confidence 55555555555555555555555443211 2223333333222221111100
Q ss_pred CChHHHHHH-HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHH
Q 003020 405 DKISMASRY-FWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLW 483 (856)
Q Consensus 405 g~~~~A~~~-~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 483 (856)
+..+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..++..++.+|.+.|++++|..+
T Consensus 255 -----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (597)
T 2xpi_A 255 -----VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAI 327 (597)
T ss_dssp -----HHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----HHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 0000 222222222233334444455555555555555555555443 24555555555555555555555555
Q ss_pred HHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 003020 484 FRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPD 563 (856)
Q Consensus 484 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 563 (856)
|+++...+|.+..++..++..+.+.|++++|..+|+.+....+.+..+|+.++..|.+.|++++|.++|+++.
T Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------- 400 (597)
T 2xpi_A 328 TTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS------- 400 (597)
T ss_dssp HHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------
T ss_pred HHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH-------
Confidence 5555444444444444444444444444444444444443334444444444444444444444444444443
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003020 564 KCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINA 643 (856)
Q Consensus 564 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 643 (856)
+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+
T Consensus 401 ----------------------------~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 401 ----------------------------TMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp ----------------------------HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred ----------------------------HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 322 2345567777777777777888888887777654 3467778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHc
Q 003020 644 FADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSL----EASPD--VYTSNCMIDLYSER 717 (856)
Q Consensus 644 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~ 717 (856)
|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 888888888888888887654 557788888888888888888888888887764 55676 67888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003020 718 SMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYA 784 (856)
Q Consensus 718 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 784 (856)
|++++|.+.++++.+..|.++.+|..++.+|...|++++|.+.++++++..|. ++..+..++.+|.
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKRALE 595 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888877 7788888777664
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=375.98 Aligned_cols=491 Identities=10% Similarity=-0.008 Sum_probs=324.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCC
Q 003020 164 RSIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGG 243 (856)
Q Consensus 164 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 243 (856)
....+...|++++|+.+|+.+... .|+..++..++.+|.+.|++++|+.+|+++.. ..++..+++.++.+|.+.|
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 90 WRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHHHHHHh
Confidence 344567789999999999999864 46778999999999999999999999999865 3568999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCC-----hhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCC
Q 003020 244 LKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGE-----FQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGS 318 (856)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (856)
++++|+.+|+++... +.. ...+.+.++ ...+...+... ......++...++..++.+...+ +
T Consensus 165 ~~~~A~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~-p 231 (597)
T 2xpi_A 165 DWQGALNLLGETNPF----RKD-----EKNANKLLMQDGGIKLEASMCYLRG---QVYTNLSNFDRAKECYKEALMVD-A 231 (597)
T ss_dssp CHHHHHHHHCSSCTT----C---------------CCCSSCCHHHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred hHHHHHHHHhccCCc----ccc-----ccccccccccccccchhHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 999999999963221 110 111111121 12222222211 11222345667777777665543 2
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHH--H-HHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003020 319 LSSYTYNTLIDTYGKAGQLKEASE--T-FAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYN 395 (856)
Q Consensus 319 ~~~~~~~~li~~~~~~g~~~~A~~--~-~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 395 (856)
.+...+..++..+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 309 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLL 309 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHH
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHH
Confidence 345666666665544433322221 1 445544444444556666677777777778888887777654 56777777
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcC
Q 003020 396 ILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAG 475 (856)
Q Consensus 396 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 475 (856)
.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.++.+.|++++|.++++++.+.. +.+..++..++.+|.+.
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~- 386 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCV- 386 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHh-
Confidence 777777777777777777777776542 356677777777777777777777777766432 22444555555555554
Q ss_pred ChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003020 476 MLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSM 555 (856)
Q Consensus 476 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 555 (856)
|++++|.+.|+++.+..+.+..+|+.++.+|.+.|++++|+++|+++
T Consensus 387 ---------------------------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 387 ---------------------------------NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp ---------------------------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ---------------------------------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555545666778888888888888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003020 556 TSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVV 635 (856)
Q Consensus 556 ~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 635 (856)
.+.+ | .+..++..++.+|.+.|++++|.++|+++.+.. +.+..
T Consensus 434 ~~~~--~----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 476 (597)
T 2xpi_A 434 ARLF--Q----------------------------------GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPL 476 (597)
T ss_dssp HHTT--T----------------------------------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHH
T ss_pred HHhC--c----------------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 7652 1 234445555566666666666666666666543 23566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESA----GLPPN--AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNC 709 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 709 (856)
+|+.++..|.+.|++++|..+|+++.+. +..|+ ..+|..++.+|.+.|++++|++.|+++.+.+ +.+..+|..
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 555 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTA 555 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 6666666666667777777666666553 44555 6677777777777777777777777777644 246677777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003020 710 MIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY 748 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 748 (856)
++.+|...|++++|.+.++++.+..|.++.++..+..+|
T Consensus 556 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 556 IALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 777777778888888888777777777777777776655
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-28 Score=265.80 Aligned_cols=184 Identities=14% Similarity=0.125 Sum_probs=93.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 600 IPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLY 679 (856)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 679 (856)
..+..+...+...|++++|+..|+++++.. +.+..++..++.++...|++++|...|+++.+.+ |.+..+|..++.++
T Consensus 204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 204 DAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 334444444455555555555555554432 1234455555555555555555555555555442 33344555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 680 TKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATR 759 (856)
Q Consensus 680 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 759 (856)
.+.|++++|++.|+++.+.. +.+..++..++..+...|++++|.+.++++.+..|.+..++..++.++.+.|++++|++
T Consensus 282 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 282 KEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555555432 13344455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003020 760 IAKQMRESGLISDLLSYNNVLGLYAVDG 787 (856)
Q Consensus 760 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g 787 (856)
.++++++..|. ++..|..++.++...|
T Consensus 361 ~~~~a~~~~p~-~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 361 HYKEAIRISPT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHTTCTT-CHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhCCC-CHHHHHhHHHHHHHcc
Confidence 55555555444 4455555555544443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-28 Score=266.51 Aligned_cols=381 Identities=15% Similarity=0.127 Sum_probs=312.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHH
Q 003020 433 LYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVL 512 (856)
Q Consensus 433 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 512 (856)
...+.+.|++++|++.+.++.+..+ .+...+..+...+...|++++|...++......|.+..+|..++..+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 3445556666666666666655422 234455556666666677777777777776667777777777777777777777
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 003020 513 EAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQE 592 (856)
Q Consensus 513 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 592 (856)
+|+..|+++....|.+..+|..++.++...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77777777777777777888888888888888888888888887753 22455667777888888888888888888887
Q ss_pred cCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003020 593 AGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIY 672 (856)
Q Consensus 593 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 672 (856)
.. +.+..+|..+...+...|++++|...|+++++.+ +.+...|..+...+...|++++|...|++..... |.+..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 64 3457789999999999999999999999999875 3467899999999999999999999999998864 5578899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 003020 673 NSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG 752 (856)
Q Consensus 673 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 752 (856)
..++.++...|++++|++.|+++.+... .+...|..++.++.+.|++++|.+.++++.+..|.+..++..++.++...|
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Confidence 9999999999999999999999998542 356789999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcC
Q 003020 753 RFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDD-FTFKSLGAVLMKCG 822 (856)
Q Consensus 753 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~G 822 (856)
++++|++.++++++..|. +..++..++.+|.+.|++++|+..|+++++ +.|+. ..|..+...+...|
T Consensus 320 ~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp CHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 999999999999998876 889999999999999999999999999998 46764 45778877776654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-25 Score=249.00 Aligned_cols=454 Identities=11% Similarity=0.026 Sum_probs=286.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003020 321 SYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFL 400 (856)
Q Consensus 321 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 400 (856)
+..|......+.+.|++++|+..|+++++.+ |+..+|..+..++...|++++|...++++.+.+ |.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4677888899999999999999999999865 789999999999999999999999999999875 6677899999999
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHH
Q 003020 401 HAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKS 480 (856)
Q Consensus 401 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 480 (856)
+.+.|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+......-.............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999998763 455555555555554444444444443333322222221111100000000000000
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc---cCCHHHHHHHHHHHHh
Q 003020 481 WLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGM---GRNYDKACNLFDSMTS 557 (856)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 557 (856)
..+...+.. +...... . .-..+.+...+......+.. .|++++|+..|+++.+
T Consensus 162 ~~~~~~~~~---------------~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 217 (514)
T 2gw1_A 162 TSMASFFGI---------------FKPELTF----A-----NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217 (514)
T ss_dssp HHHHHHHTT---------------SCCCCCC----S-----SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh---------------cCHHHHH----H-----HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 000000000 0000000 0 00002224444444444443 6666666666666665
Q ss_pred -----CCC--------CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 558 -----HGA--------VPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKD 624 (856)
Q Consensus 558 -----~~~--------~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (856)
... +.+..++..+...+...|++++|...++++.+.... ..++..+...+...|++++|...+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp HHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred HhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 211 112345666666677777777777777776665432 66667777777777777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003020 625 MIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDV 704 (856)
Q Consensus 625 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 704 (856)
+.+.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..++..+...|++++|+..|+.+.+... .+.
T Consensus 296 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 372 (514)
T 2gw1_A 296 ALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAP 372 (514)
T ss_dssp HHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCS
T ss_pred HhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCH
Confidence 77653 3355667777777777777777777777777654 44556777777777777777777777777766432 234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 705 YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANE------FTYAMMLIMYKR---NGRFEEATRIAKQMRESGLISDLLS 775 (856)
Q Consensus 705 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~ 775 (856)
..+..++..+...|++++|...++++.+..|.+. .++..++.++.. .|++++|++.++++++..|. ++.+
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~ 451 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQA 451 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHH
Confidence 5666777777777777777777777766554443 367777777777 77777777777777777665 6677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 776 YNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFT 810 (856)
Q Consensus 776 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 810 (856)
+..++.+|...|++++|...|+++++. .|+...
T Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~ 484 (514)
T 2gw1_A 452 KIGLAQMKLQQEDIDEAITLFEESADL--ARTMEE 484 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHH
Confidence 777777777777777777777777773 555544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-24 Score=244.65 Aligned_cols=426 Identities=11% Similarity=-0.003 Sum_probs=295.4
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 003020 356 TVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYA 435 (856)
Q Consensus 356 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 435 (856)
...+......+.+.|++++|...|+++.+.+ |+..+|..+..++.+.|++++|+..|+++.+.+ +.+..+|..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3455666666777777777777777777653 566777777777777777777777777776654 2345666777777
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHH
Q 003020 436 YSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAE 515 (856)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 515 (856)
+...|++++|+..|+++.+.+. ++......++..+........+...+..+. .+.
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------------~~~ 137 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDID------------------------TAT 137 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHH
Confidence 7777777777777777766543 233333333322222211111111111110 000
Q ss_pred HHHHHHhcCCCCcHHHH--HHHHHHHHccCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHc---CCChHHHH
Q 003020 516 RAFICCQEGKKLTVLVF--NVMVKAYGMGRNYDKACNLFDSMTSH------GAVPDKCSYNSLIQILAG---ADLPHMAK 584 (856)
Q Consensus 516 ~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~ll~~~~~---~~~~~~A~ 584 (856)
.. ++..... ...............+...+...... ..+.+...+......+.. .|++++|.
T Consensus 138 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 209 (514)
T 2gw1_A 138 AT--------PTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKAD 209 (514)
T ss_dssp ---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHH
T ss_pred Hh--------hhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 00 0000000 00000000001111111111110000 001224555555555555 89999999
Q ss_pred HHHHHHHH-----cCC--------CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003020 585 RYLRKMQE-----AGL--------VSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVK 651 (856)
Q Consensus 585 ~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 651 (856)
..++++.+ ... +.+..++..+...+...|++++|...|+++.+..+ +...+..+...+...|+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~ 287 (514)
T 2gw1_A 210 ESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDST 287 (514)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCT
T ss_pred HHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHH
Confidence 99999988 311 22355788899999999999999999999998753 3889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 652 QAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMK 731 (856)
Q Consensus 652 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 731 (856)
+|...++++.+.. +.+..++..++..+...|++++|+..|+++.+... .+...+..++..+...|++++|...++++.
T Consensus 288 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 288 EYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp TGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998874 56778999999999999999999999999998543 356678889999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcC
Q 003020 732 KKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISD-----LLSYNNVLGLYAV---DGRFKDVIGTFKDMVNAA 803 (856)
Q Consensus 732 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g 803 (856)
+..|.++.++..++.++...|++++|++.++++++..+... ..+|..++.+|.. .|++++|+..++++++..
T Consensus 366 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 366 RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 99899999999999999999999999999999998866521 3489999999999 999999999999999852
Q ss_pred CCCCHHHHHHHHHHHHHcC
Q 003020 804 IQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 804 ~~p~~~~~~~l~~~~~~~G 822 (856)
..+...+..+..++.+.|
T Consensus 446 -~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 446 -PRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp -TTCHHHHHHHHHHHHHTT
T ss_pred -cccHHHHHHHHHHHHHhc
Confidence 334567899999999999
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-26 Score=250.47 Aligned_cols=187 Identities=13% Similarity=0.134 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCC---------HHHHHHHHHHHHhCCCCccHH
Q 003020 195 IHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGL---------KEEAVCWLERMNEGGMEPDEV 265 (856)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---------~~~A~~~~~~~~~~~~~~~~~ 265 (856)
..++.+|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.+. .++|.++|++|.+.|+.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~- 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE- 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH-
Confidence 34556666666666666666666666666666666666666666655443 34455555555555555554
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 003020 266 TMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFA 345 (856)
Q Consensus 266 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (856)
.+||+||.+|++.|++++|.++|+
T Consensus 106 --------------------------------------------------------~tyn~lI~~~~~~g~~~~A~~l~~ 129 (501)
T 4g26_A 106 --------------------------------------------------------ATFTNGARLAVAKDDPEMAFDMVK 129 (501)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --------------------------------------------------------HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 555555555555555555555555
Q ss_pred HHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 003020 346 QMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPD 425 (856)
Q Consensus 346 ~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 425 (856)
+|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+
T Consensus 130 ~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 130 QMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred HHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhHHHHHHHHHh
Q 003020 426 IVSYRTLLYAYSI 438 (856)
Q Consensus 426 ~~~~~~ll~~~~~ 438 (856)
..||+.++..|..
T Consensus 210 ~~T~~~l~~~F~s 222 (501)
T 4g26_A 210 KSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhc
Confidence 5555555555543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9e-26 Score=248.09 Aligned_cols=189 Identities=16% Similarity=0.204 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC---------hHHHHHHHHHHHHcCCCCCh
Q 003020 529 VLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADL---------PHMAKRYLRKMQEAGLVSDC 599 (856)
Q Consensus 529 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~ 599 (856)
...++.+|++|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. .+.|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 457889999999999999999999999999999999999999999987664 68899999999999999999
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 600 IPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLY 679 (856)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 679 (856)
.+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++|+.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003020 680 TKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSER 717 (856)
Q Consensus 680 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 717 (856)
++.|++++|.++|++|.+.+..|+..||+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999988753
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-23 Score=235.43 Aligned_cols=435 Identities=11% Similarity=0.043 Sum_probs=283.8
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003020 320 SSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIF 399 (856)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 399 (856)
....|..+...+.+.|++++|+..|+++++..+ .+..++..+..++...|++++|...++++.+.+ |.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 356788899999999999999999999998753 377899999999999999999999999999876 667889999999
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCC------CCCCHhhHHHHHHHHHH
Q 003020 400 LHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGG------LEIDEYTQSALTRMYIE 473 (856)
Q Consensus 400 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~ 473 (856)
++...|++++|+..|+.+ .. .|+. ....+..+...+...+|...+++++... ..|+. ..+..+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHH
Confidence 999999999999999633 22 2332 2223445666677788999999987642 22333 23344555
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhh--------cCCHHHHHHHHHHHhcCCCCcHH-------HHHHHHHH
Q 003020 474 AGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGE--------RGHVLEAERAFICCQEGKKLTVL-------VFNVMVKA 538 (856)
Q Consensus 474 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~-------~~~~li~~ 538 (856)
..+.+.+...+.+.....+........+...+.. .|++++|...|+.+.+..|.+.. ++..+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHH
Confidence 5665555444433322222222222333322222 24677777777777776666543 35555566
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 003020 539 YGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMA 618 (856)
Q Consensus 539 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 618 (856)
+...|++++|+..|+++.+. .|+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 66777777777777777764 3446666667777777777777777777776654 33556677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003020 619 EEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSL 698 (856)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 698 (856)
...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|+..|+++.+.
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 77777776654 2245566667777777777777777777776653 445566667777777777777777777766552
Q ss_pred CCC-----CCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003020 699 EAS-----PDVYTSNCMIDLYSER----------SMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQ 763 (856)
Q Consensus 699 ~~~-----p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 763 (856)
... .....+..+..++... |++++|...++++.+..|.+..++..++.+|...|++++|++.+++
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 110 1112233444555555 7777777777777766666777777777777777777777777777
Q ss_pred HHHcCCC
Q 003020 764 MRESGLI 770 (856)
Q Consensus 764 ~~~~~~~ 770 (856)
+++..|.
T Consensus 488 al~~~~~ 494 (537)
T 3fp2_A 488 SAILART 494 (537)
T ss_dssp HHHHC--
T ss_pred HHHhCCC
Confidence 7776655
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-23 Score=228.26 Aligned_cols=362 Identities=12% Similarity=0.049 Sum_probs=255.1
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 003020 409 MASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFH 488 (856)
Q Consensus 409 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 488 (856)
.+...+.+..... +.+...+..++..+.+.|++++|+.+|+++++.. +.+..++..++.++...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444332 3455667777777777777777777777776542 2256666667777777777777777777776
Q ss_pred hcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 003020 489 LAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTV---LVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKC 565 (856)
Q Consensus 489 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 565 (856)
...|....++..++..|...|++++|...|+.+....+.+. ..+..++..+...
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------- 144 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ----------------------- 144 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------
Confidence 66666666666666666666666666666666666555555 5555554442111
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003020 566 SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFA 645 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 645 (856)
.+..+...+...|++++|...++++.+.. +.+..++..++.+|.+.|++++|...|+++.+.. +.+..+|..++..|.
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 222 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYY 222 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 11223344666777777777777777653 3466777788888888888888888888887653 346778888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHH
Q 003020 646 DVGNVKQAQSYFDAMESAGLPPNAVIYNSL------------IKLYTKVGYLKEAQETYKLLRSLEASPD-----VYTSN 708 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~ 708 (856)
..|++++|+..|+++.... +.+...+..+ +..+.+.|++++|+..|+++.+.. |+ ...+.
T Consensus 223 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~ 299 (450)
T 2y4t_A 223 QLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKE 299 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHH
Confidence 8888888888888887653 4455555444 888999999999999999998843 43 44788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH------
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGL------ 782 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~------ 782 (856)
.++.++.+.|++++|+..++++.+..|.+..+|..++.+|...|++++|+..++++++..|. ++..+..++.+
T Consensus 300 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 300 RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhc
Confidence 88999999999999999999999888999999999999999999999999999999998887 88888888844
Q ss_pred ------HHhcC-----CHHHHHHHHHH-HHH
Q 003020 783 ------YAVDG-----RFKDVIGTFKD-MVN 801 (856)
Q Consensus 783 ------~~~~g-----~~~~A~~~~~~-~~~ 801 (856)
|...| +.+++.+.|++ .++
T Consensus 379 ~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~ 409 (450)
T 2y4t_A 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQ 409 (450)
T ss_dssp HHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH
T ss_pred ccchhHHHHhCCCccCCHHHHHHHHHHHHHH
Confidence 44445 56777888886 444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-23 Score=234.07 Aligned_cols=438 Identities=11% Similarity=0.031 Sum_probs=344.1
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 003020 356 TVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYA 435 (856)
Q Consensus 356 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 435 (856)
...+..+...+.+.|++++|...|+++.+.. |.+..++..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567888889999999999999999999875 6688999999999999999999999999999875 3578899999999
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc---hhhHHHHHHHhhcCCHH
Q 003020 436 YSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSS---EGYSANIDGYGERGHVL 512 (856)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 512 (856)
+...|++++|+..|+ .......+.. ..+..+...+...+|...++++....|... ......+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDFDG----ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhcCCCCCh----HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999997 4433222222 223345555666788888888876543222 22234455566677777
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcc--------CCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHcC
Q 003020 513 EAERAFICCQEGKKLTVLVFNVMVKAYGMG--------RNYDKACNLFDSMTSHGAVPD-------KCSYNSLIQILAGA 577 (856)
Q Consensus 513 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~-------~~~~~~ll~~~~~~ 577 (856)
.+...+.......+........+...+... |++++|+.+|+++.+.... + ..++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhc
Confidence 776666555544444445556665555443 4889999999999876322 2 23567777888999
Q ss_pred CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003020 578 DLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYF 657 (856)
Q Consensus 578 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 657 (856)
|++++|...++++.+.. |+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999875 557889999999999999999999999999875 447889999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 003020 658 DAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN 737 (856)
Q Consensus 658 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 737 (856)
+++.+.. +.+...+..++.++...|++++|+..|+++.+... .+...+..++.++...|++++|.+.++++.+..|.+
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 9998864 55678899999999999999999999999988542 456678889999999999999999999998765332
Q ss_pred ------HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 738 ------EFTYAMMLIMYKRN----------GRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 738 ------~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
...+..++.++... |++++|+..++++++..|. ++.++..++.+|...|++++|...|+++++
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 23355667888888 9999999999999999887 889999999999999999999999999999
Q ss_pred cCCCCCHH
Q 003020 802 AAIQPDDF 809 (856)
Q Consensus 802 ~g~~p~~~ 809 (856)
. .|+..
T Consensus 491 ~--~~~~~ 496 (537)
T 3fp2_A 491 L--ARTMD 496 (537)
T ss_dssp H--C--CH
T ss_pred h--CCCcH
Confidence 5 45433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=9.8e-23 Score=225.52 Aligned_cols=390 Identities=11% Similarity=0.062 Sum_probs=287.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 373 AEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEM 452 (856)
Q Consensus 373 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 452 (856)
..+...+.+..... |.+...+..+...+.+.|++++|+.+|+++.+.. +.+..+|..++.++...|++++|+..|+++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34455555555443 5677899999999999999999999999999764 457889999999999999999999999999
Q ss_pred hcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc---hhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcH
Q 003020 453 DGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSS---EGYSANIDGYGERGHVLEAERAFICCQEGKKLTV 529 (856)
Q Consensus 453 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 529 (856)
++.++. +..++..++.+|...|++++|...|+++....|.+. ..+..++..+..
T Consensus 87 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------- 143 (450)
T 2y4t_A 87 IQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM---------------------- 143 (450)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----------------------
T ss_pred HhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----------------------
Confidence 987533 678899999999999999999999999998888877 777777555321
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 003020 530 LVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSY 609 (856)
Q Consensus 530 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 609 (856)
..+..++..+...|++++|+..|+++.+.. +.+..++..++.++...|++++|...++++.+.. +.+..++..++.+|
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLY 221 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 123334455566677777777777776642 2356667777777777777777777777776653 34566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHH
Q 003020 610 MKLGQLEMAEEVYKDMIRFNVEPDVVVYGVL------------INAFADVGNVKQAQSYFDAMESAGLPPN----AVIYN 673 (856)
Q Consensus 610 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~ 673 (856)
...|++++|+..|+++.+.. +.+...+..+ +..+.+.|++++|..+|+++.+.. +.+ ...+.
T Consensus 222 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~ 299 (450)
T 2y4t_A 222 YQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKE 299 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHH
Confidence 77888888888887777653 2244444444 788889999999999999998753 223 34788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH------
Q 003020 674 SLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIM------ 747 (856)
Q Consensus 674 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~------ 747 (856)
.++.++.+.|++++|+..++++.+.. +.+...|..++.+|...|++++|...++++.+..|.++.++..+..+
T Consensus 300 ~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 300 RICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 88899999999999999999988743 24678888999999999999999999999999889998888888844
Q ss_pred ------HHHcC-----CHHHHHHHHHH-HHHcCCC--CCH-------HHHHHHHHHHHhcCCHHHH
Q 003020 748 ------YKRNG-----RFEEATRIAKQ-MRESGLI--SDL-------LSYNNVLGLYAVDGRFKDV 792 (856)
Q Consensus 748 ------~~~~g-----~~~~A~~~~~~-~~~~~~~--p~~-------~~~~~l~~~~~~~g~~~~A 792 (856)
|...| +.+++.+.|++ .++..|. |+. ..+..+..+|...|+.+.+
T Consensus 379 ~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred ccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 33344 56778888886 5665544 222 2566677777776665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-20 Score=199.91 Aligned_cols=326 Identities=12% Similarity=0.054 Sum_probs=205.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcc
Q 003020 463 TQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMG 542 (856)
Q Consensus 463 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 542 (856)
.+..++..+...|++++|...|+++....|.+..++..++..+...|++++|+..|+++....|.+..++..++.++...
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 44445555555555555555555555555555566666666666666666666666666665555666666666666667
Q ss_pred CCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 003020 543 RNYDKACNLFDSMTSHGAVP----DKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMA 618 (856)
Q Consensus 543 g~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 618 (856)
|++++|+..|+++.+. .| +...+..+..... ...+..+...+...|++++|
T Consensus 85 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp TCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHHH
Confidence 7777777777766654 23 1222222211100 01123344556666777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003020 619 EEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSL 698 (856)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 698 (856)
...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|...|+++.+.
T Consensus 140 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 140 ITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777766653 3355666666677777777777777777776653 456666777777777777777777777766663
Q ss_pred CCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHH
Q 003020 699 EASPDVYTSN------------CMIDLYSERSMVRQAEEIFEIMKKKGDANEF----TYAMMLIMYKRNGRFEEATRIAK 762 (856)
Q Consensus 699 ~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~ 762 (856)
.. .+...+. .++..+...|++++|...++++.+..|.++. .+..++.++...|++++|+..++
T Consensus 218 ~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 296 (359)
T 3ieg_A 218 DQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICS 296 (359)
T ss_dssp CT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Cc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 32 1222221 2355677788888888888888777766653 34557778888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Q 003020 763 QMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDD-FTFKSLGAVLM 819 (856)
Q Consensus 763 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~ 819 (856)
++++..|. ++.+|..++.+|...|++++|...|+++++. .|+. ..+..+..+..
T Consensus 297 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 297 EVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred HHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 88887766 7778888888888888888888888888773 5553 33555554443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-20 Score=196.35 Aligned_cols=286 Identities=13% Similarity=0.073 Sum_probs=211.8
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003020 496 EGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILA 575 (856)
Q Consensus 496 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 575 (856)
+.+..++..+...|++++|+..|+.+....|.++.++..++.++...|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 66 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL----------------- 66 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------
Confidence 344455555555666666666665555555555555555555555555555555555555543
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHH------------HHH
Q 003020 576 GADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVE--PDVVVYG------------VLI 641 (856)
Q Consensus 576 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~------------~l~ 641 (856)
. +.+...+..+...+...|++++|...|+++.+..+. .+...+. .+.
T Consensus 67 ------------------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 127 (359)
T 3ieg_A 67 ------------------K-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQA 127 (359)
T ss_dssp ------------------C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------C-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHH
Confidence 2 123344444555555555555555555555543210 1222332 236
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 003020 642 NAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVR 721 (856)
Q Consensus 642 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 721 (856)
..+...|++++|+.+++++.+.. +.+...+..++..+...|++++|+..++++.+.. +.+...+..++..+...|+++
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 78899999999999999998874 6788999999999999999999999999999854 356788999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHh
Q 003020 722 QAEEIFEIMKKKGDANEFTYAM------------MLIMYKRNGRFEEATRIAKQMRESGLISDL----LSYNNVLGLYAV 785 (856)
Q Consensus 722 ~A~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~ 785 (856)
+|...++++.+..|.+...+.. ++..+...|++++|+..++++++..|. ++ ..+..++.+|..
T Consensus 206 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~ 284 (359)
T 3ieg_A 206 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSK 284 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHH
Confidence 9999999999998888876653 377799999999999999999999877 55 346678999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcC
Q 003020 786 DGRFKDVIGTFKDMVNAAIQP-DDFTFKSLGAVLMKCG 822 (856)
Q Consensus 786 ~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~G 822 (856)
.|++++|+..++++++. .| +...+..+..++.+.|
T Consensus 285 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g 320 (359)
T 3ieg_A 285 DEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEE 320 (359)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcC
Confidence 99999999999999985 45 5678999999999999
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-17 Score=187.54 Aligned_cols=639 Identities=11% Similarity=0.076 Sum_probs=408.3
Q ss_pred ccccccccccccccCCcccccccccccc-----------cccc------ccccc-ccCCchhHHHhhccccccHHHHhhH
Q 003020 93 SKNTWVDVRIGNERRTDVISAVCVNGEV-----------QTKC------STKWA-RYGGCIPSMLQALDTVKDLDEALKP 154 (856)
Q Consensus 93 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~-----------~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~al~~ 154 (856)
++.+.+++++...+.|.+.+.+++-.+. ++.. |--+. .--+-++.+..-|.+++. .+-++.
T Consensus 724 d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~-~~~ie~ 802 (1630)
T 1xi4_A 724 DPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNL-QKYIEI 802 (1630)
T ss_pred ChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCc-hhHHHH
Confidence 3446799999999999998887765541 1000 00000 000112333333333333 344566
Q ss_pred hhhhcChh----HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChh
Q 003020 155 WAENLSNK----ERSIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINS 230 (856)
Q Consensus 155 ~~~~~~~~----~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 230 (856)
|-+..+|. .++.++...++-+.-..+...+. +..+ -.-|+...-+.++..--...++.-+..|.. ++.
T Consensus 803 yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~--~~~~-----~~~lv~~~ekrnrLkll~p~LE~~~~~g~~-~~~ 874 (1630)
T 1xi4_A 803 YVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVR--GQFS-----TDELVAEVEKRNRLKLLLPWLEARIHEGCE-EPA 874 (1630)
T ss_pred HHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhc--cCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHH
Confidence 65555544 34444433333333333333331 2122 345777777888888888888888888877 899
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhc
Q 003020 231 TYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVE 310 (856)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (856)
++|.+++.|...++-.+.. +.. |..-=..++.-||...|..-|.-.|++-. +.++.+.+-.
T Consensus 875 ~hnalakiyid~n~npe~f------L~~----n~~yd~~~vgkyce~rDp~la~iay~~g~---------~d~eli~vt~ 935 (1630)
T 1xi4_A 875 THNALAKIYIDSNNNPERF------LRE----NPYYDSRVVGKYCEKRDPHLACVAYERGQ---------CDLELINVCN 935 (1630)
T ss_pred HHHHHHHHHhccCCCHHHH------hhc----cCcccHHHHHHHHHhcCcchHHHHhcccC---------CcHHHHHHHh
Confidence 9999999998766443321 111 11111122333444444444444443210 0000000000
Q ss_pred cC-C------cCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHhcCCCHHHHHHHHHH
Q 003020 311 NG-S------HVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGI--VPTTVTFNTMIHIYGNNDQLAEVDSLIKK 381 (856)
Q Consensus 311 ~~-~------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 381 (856)
+. . ---...|...|..++.- +-+-=.++.++.....+ .-++.--...+++|...|.+.+|.+++++
T Consensus 936 ~n~l~k~~arylv~r~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEK 1010 (1630)
T 1xi4_A 936 ENSLFKSLSRYLVRRKDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEK 1010 (1630)
T ss_pred cchhHHHHHHHHHHhcCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHH
Confidence 00 0 00001134455544411 11111122222221111 12333445667888899999999999999
Q ss_pred HHhCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 003020 382 MEELHC--PPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEI 459 (856)
Q Consensus 382 ~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p 459 (856)
+.-.+- ..+....+.++....+. +..+..++..+... .+ ..-+...+...|.+++|..+|++...
T Consensus 1011 ivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~----~d---~~eIA~Iai~lglyEEAf~IYkKa~~----- 1077 (1630)
T 1xi4_A 1011 IVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN----YD---APDIANIAISNELFEEAFAIFRKFDV----- 1077 (1630)
T ss_pred HHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh----cc---HHHHHHHHHhCCCHHHHHHHHHHcCC-----
Confidence 883321 12445667777776666 55666666666542 12 33367778889999999999998631
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 003020 460 DEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAY 539 (856)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 539 (856)
.......+ +...+++++|.+.++++ ..+.+|..++.++...|++++|+..|.++ .+...|..++.++
T Consensus 1078 ~~~A~~VL---ie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~ 1144 (1630)
T 1xi4_A 1078 NTSAVQVL---IEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAA 1144 (1630)
T ss_pred HHHHHHHH---HHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHH
Confidence 11122222 33778899999888876 45889999999999999999999999775 5688888999999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH
Q 003020 540 GMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAE 619 (856)
Q Consensus 540 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 619 (856)
.+.|++++|++.|...++.. ++....+.++.+|++.+++++...+ ++ .++...+..+...|...|++++|.
T Consensus 1145 ~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A 1145 NTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred HHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999887764 3333344588899999888854433 22 346667778999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003020 620 EVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLE 699 (856)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 699 (856)
..|..+ ..|..++.++.+.|++++|.+.+++. .+..+|..+..+|...|++..|......
T Consensus 1216 ~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~----- 1275 (1630)
T 1xi4_A 1216 LLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH----- 1275 (1630)
T ss_pred HHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----
Confidence 999885 38889999999999999999999876 3568899999999999999999887653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCC-----CCC
Q 003020 700 ASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN--GRFEEATRIAKQMRESGL-----ISD 772 (856)
Q Consensus 700 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~-----~p~ 772 (856)
+..+...+..++..|.+.|.+++|+.+++..+...+.+...|.-|+.+|.+. ++..++++.|..-....+ . +
T Consensus 1276 Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e-~ 1354 (1630)
T 1xi4_A 1276 IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAE-Q 1354 (1630)
T ss_pred hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHH-H
Confidence 2245556678899999999999999999999988888888887777777765 467777777775554322 2 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003020 773 LLSYNNVLGLYAVDGRFKDVIGTF-------------KDMVNAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 773 ~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~g~~p~~~~~~~l~~~~~~~G 822 (856)
...|..+...|.+.|+|+.|+... +..+.. ..+...|-..+..|...+
T Consensus 1355 ~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1355 AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHHhhC
Confidence 677999999999999999998322 222211 345566666666666555
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-16 Score=181.96 Aligned_cols=588 Identities=10% Similarity=0.118 Sum_probs=318.3
Q ss_pred ccCCchhHHHhhccccccHHHHhhHhhhhcChhHHHHHHHhcCCHHHHHHHHHHhHHcC-CCCCCHHHHHHHHHHHHccC
Q 003020 130 RYGGCIPSMLQALDTVKDLDEALKPWAENLSNKERSIILKEQSSWERALEIFEWFKRQE-CHELNVIHYNIMLRTLGKAR 208 (856)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g 208 (856)
.-|.+-..++..-+.++.+..--..+-+.-++.....||.....+. +++.+|..... +-..++.--...+..|...|
T Consensus 922 ~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~R--R~Lidqv~a~aL~e~~~PeeVs~~vKaf~~ag 999 (1630)
T 1xi4_A 922 ERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYR--RPLIDQVVQTALSETQDPEEVSVTVKAFMTAD 999 (1630)
T ss_pred cccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHH--HHHHHHHHHhhcccccCHHHhHHHHHHHHhCC
Confidence 3355666666666666666544444444455555566664433222 23334322210 01222333345566777788
Q ss_pred CHHHHHHHHHHHHhCCC--CcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHH
Q 003020 209 KWSYVQSLWDEMSVKGI--VPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEF 286 (856)
Q Consensus 209 ~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 286 (856)
.+.+|++++++....+- .-+....+.++....+. +..+..+..++.... + ..-+...+...|.+++|..+
T Consensus 1000 lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~I 1071 (1630)
T 1xi4_A 1000 LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAI 1071 (1630)
T ss_pred CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHH
Confidence 88888888888773311 01334455555554444 334444444443211 1 22355667777778888888
Q ss_pred HHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 003020 287 FKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIY 366 (856)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 366 (856)
|++... .....+.++. ..+++++|.++.++. -+..+|..+..++
T Consensus 1072 YkKa~~---------------------------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAq 1115 (1630)
T 1xi4_A 1072 FRKFDV---------------------------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQ 1115 (1630)
T ss_pred HHHcCC---------------------------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHH
Confidence 776531 1112222222 556677777776654 1355666777777
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 003020 367 GNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAE 446 (856)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 446 (856)
...|++++|...|.+. .|...|..++..+.+.|++++|.+.|....+.. ++....+.++.+|++.+++++..
T Consensus 1116 l~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1116 LQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred HhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHH
Confidence 7777777777777553 356666667777777777777777776655543 33223334666777776666433
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 003020 447 ELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKK 526 (856)
Q Consensus 447 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 526 (856)
.+. . .++...+..++..|...|++++|...|.++ ..|..++.++.+.|++++|.+.++++.
T Consensus 1188 ~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~---- 1248 (1630)
T 1xi4_A 1188 EFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN---- 1248 (1630)
T ss_pred HHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC----
Confidence 332 1 234455556777777777777777777664 366667777777777777777776652
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 003020 527 LTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVI 606 (856)
Q Consensus 527 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 606 (856)
+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+... +-....|+-+.
T Consensus 1249 -n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELa 1321 (1630)
T 1xi4_A 1249 -STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 1321 (1630)
T ss_pred -CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHH
Confidence 4567777777777777777776655432 2345555666777777777777777776665443 22334455555
Q ss_pred HHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHHCCC
Q 003020 607 SSYMKL--GQLEMAEEVYKDMIRFNVEP------DVVVYGVLINAFADVGNVKQAQSYF-------------DAMESAGL 665 (856)
Q Consensus 607 ~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~ 665 (856)
..|++. ++..++.+.|..-.. ++| +...|..+.-.|.+.|+++.|.... ...+. -
T Consensus 1322 iLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--k 1397 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--K 1397 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--c
Confidence 555543 344455555543322 222 3456666777777777777666221 11111 1
Q ss_pred CCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHH-------------HHhCCCCCCHHHHHHHHHHHHHc
Q 003020 666 PPNAVIYNSLIKLYTKVG---------------YLKEAQETYKL-------------LRSLEASPDVYTSNCMIDLYSER 717 (856)
Q Consensus 666 ~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~-------------~~~~~~~p~~~~~~~l~~~~~~~ 717 (856)
..|+..|...+..|.... +++++.++|.+ +.. ..+...-..+.+.+...
T Consensus 1398 v~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~---~n~~~Vneal~el~iee 1474 (1630)
T 1xi4_A 1398 VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN---HNNKSVNESLNNLFITE 1474 (1630)
T ss_pred cccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHH---hcchhhhHHHHHHhcCc
Confidence 345555555555555444 44555444442 221 11222223334444444
Q ss_pred CCHHHHHHHH------------HHHHhCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003020 718 SMVRQAEEIF------------EIMKKKGDANEFTYAMML-IMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYA 784 (856)
Q Consensus 718 g~~~~A~~~~------------~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 784 (856)
.+++.-.... +++.+ ....-+..++ ..|.+.|+|+.|.+++++.. .|.-.+.+..
T Consensus 1475 ed~~~Lr~si~~~~nfd~~~La~~lek---heLl~frrIAa~ly~~n~~~~~ai~l~k~d~---------l~~dAm~~a~ 1542 (1630)
T 1xi4_A 1475 EDYQALRTSIDAYDNFDNISLAQRLEK---HELIEFRRIAAYLFKGNNRWKQSVELCKKDS---------LYKDAMQYAS 1542 (1630)
T ss_pred cchHHHHHHHhhccCcCHHHHHHHhhh---hhHHHHHHHHHHHHHhcCcHHHHHHHHHhcc---------CHHHHHHHHH
Confidence 4433211111 11111 1111123333 34455588888888877532 2444566777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003020 785 VDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLM 819 (856)
Q Consensus 785 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 819 (856)
+.|+.+.+.+++.-..+.| +...|...+..|.
T Consensus 1543 ~S~d~e~~e~ll~~F~~~~---~~E~f~a~Ly~cy 1574 (1630)
T 1xi4_A 1543 ESKDTELAEELLQWFLQEE---KRECFGACLFTCY 1574 (1630)
T ss_pred HcCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHh
Confidence 7888888877777777642 3344444443333
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.1e-18 Score=187.26 Aligned_cols=339 Identities=16% Similarity=0.107 Sum_probs=170.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHH----cC
Q 003020 404 NDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSI----RRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIE----AG 475 (856)
Q Consensus 404 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 475 (856)
.+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| ++..+..+..+|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 444444444444444432 33344444444444 444444444444444432 33333444444444 34
Q ss_pred ChHHHHHHHHHHHhcCCCCchhhHHHHHHHhh----cCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc----cCCHHH
Q 003020 476 MLEKSWLWFRRFHLAGDMSSEGYSANIDGYGE----RGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGM----GRNYDK 547 (856)
Q Consensus 476 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 547 (856)
++++|..+|++....+ +..++..++..|.. .++.++|.+.|+++.+. .++..+..+...|.. .+++++
T Consensus 130 ~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHH
Confidence 4444444444443221 23333334444433 34444444444444432 234455555555554 555666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHH
Q 003020 548 ACNLFDSMTSHGAVPDKCSYNSLIQILAG----ADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMK----LGQLEMAE 619 (856)
Q Consensus 548 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 619 (856)
|+..|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+
T Consensus 206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~ 279 (490)
T 2xm6_A 206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKAL 279 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHH
Confidence 666666555542 34444455555543 455555555555555443 33444445555554 55666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHH
Q 003020 620 EVYKDMIRFNVEPDVVVYGVLINAFADV-----GNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVG---YLKEAQET 691 (856)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~ 691 (856)
..|++..+.+ +...+..+...|... +++++|+.+|++..+.| +...+..+...|...| ++++|+++
T Consensus 280 ~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~ 353 (490)
T 2xm6_A 280 EWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEW 353 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 6666655432 344455555555554 56666666666665543 3344555555555444 55566666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 003020 692 YKLLRSLEASPDVYTSNCMIDLYSE----RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR----NGRFEEATRIAKQ 763 (856)
Q Consensus 692 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 763 (856)
|++..+. .+...+..+...|.. .+++++|.+.|+++.+.+ ++.++..|+..|.. .+++++|...|++
T Consensus 354 ~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 354 FRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 6655553 234455555555555 556666666666655543 45555556666655 5566666666666
Q ss_pred HHHcCC
Q 003020 764 MRESGL 769 (856)
Q Consensus 764 ~~~~~~ 769 (856)
+.+.++
T Consensus 429 A~~~~~ 434 (490)
T 2xm6_A 429 ASTNDM 434 (490)
T ss_dssp HHHHHC
T ss_pred HHHCCC
Confidence 666553
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-19 Score=189.59 Aligned_cols=290 Identities=12% Similarity=-0.043 Sum_probs=182.1
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 003020 461 EYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYG 540 (856)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 540 (856)
...+...+..+...|++++|..+|+++....|.+...+..++..+...|++++|...+.++....+.++.+|..++
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~---- 97 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG---- 97 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH----
Confidence 3344444444455555555555555554444444444444444444444444444444444444344444444444
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH
Q 003020 541 MGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGAD-LPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAE 619 (856)
Q Consensus 541 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 619 (856)
..+...| ++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 98 -------------------------------~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 145 (330)
T 3hym_B 98 -------------------------------CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAM 145 (330)
T ss_dssp -------------------------------HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHH
T ss_pred -------------------------------HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHH
Confidence 4444444 4444444444444332 223455666666777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003020 620 EVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLE 699 (856)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 699 (856)
..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|+..++++.+..
T Consensus 146 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 146 AAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 7777776653 2244556667777777777777777777777654 5566777777777777888888888777776521
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003020 700 --------ASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS 771 (856)
Q Consensus 700 --------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 771 (856)
.+.....+..++.++...|++++|...++++.+..|.+..++..++.++...|++++|.+.++++++..|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 302 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD- 302 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-
Confidence 12334567777888888888888888888888777778888888888888888888888888888887776
Q ss_pred CHHHHHHHHHHH-HhcCCH
Q 003020 772 DLLSYNNVLGLY-AVDGRF 789 (856)
Q Consensus 772 ~~~~~~~l~~~~-~~~g~~ 789 (856)
++..+..++.++ ...|+.
T Consensus 303 ~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 303 DTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CHHHHHHHHHHHHTTTTC-
T ss_pred chHHHHHHHHHHHHHhCch
Confidence 777788888777 344543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.1e-17 Score=180.57 Aligned_cols=366 Identities=14% Similarity=0.115 Sum_probs=315.6
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHH----cCChHHHH
Q 003020 410 ASRYFWKMKEANLEPDIVSYRTLLYAYSI----RRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIE----AGMLEKSW 481 (856)
Q Consensus 410 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 481 (856)
+.+.+....+. .++..+..+...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 34555555553 477788888888887 899999999999998874 67788899999999 99999999
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHhh----cCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc----cCCHHHHHHHHH
Q 003020 482 LWFRRFHLAGDMSSEGYSANIDGYGE----RGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGM----GRNYDKACNLFD 553 (856)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~ 553 (856)
.+|++....+ ++.++..++..|.. .+++++|+..|+++.+.. ++..+..+...|.. .+++++|+..|+
T Consensus 100 ~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 100 IWYKKAALKG--LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9999998653 67888889999988 899999999999988753 67788889999987 889999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 003020 554 SMTSHGAVPDKCSYNSLIQILAG----ADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMK----LGQLEMAEEVYKDM 625 (856)
Q Consensus 554 ~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 625 (856)
+..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++.
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 999874 67888889999988 899999999999999875 66778888888886 78999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHH
Q 003020 626 IRFNVEPDVVVYGVLINAFAD----VGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKV-----GYLKEAQETYKLLR 696 (856)
Q Consensus 626 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~ 696 (856)
.+.+ +...+..+...|.. .+++++|+.+|++..+.| +...+..+...|... +++++|+..|++..
T Consensus 250 ~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 250 AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 8754 56677778888887 899999999999998765 567788888888887 89999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Q 003020 697 SLEASPDVYTSNCMIDLYSERS---MVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR----NGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 697 ~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 769 (856)
+.+ +...+..+...|...| ++++|++.++++.+. .++..+..|+..|.. .+++++|+..|+++.+.+
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~- 397 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG- 397 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence 854 4566778888888766 899999999999987 578899999999999 899999999999999975
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC
Q 003020 770 ISDLLSYNNVLGLYAV----DGRFKDVIGTFKDMVNAAIQ 805 (856)
Q Consensus 770 ~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~ 805 (856)
++..+..++.+|.. .+++++|...|++..+.+..
T Consensus 398 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 398 --LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 67899999999998 89999999999999997533
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-17 Score=186.06 Aligned_cols=429 Identities=11% Similarity=0.061 Sum_probs=280.8
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 003020 344 FAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLE 423 (856)
Q Consensus 344 ~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 423 (856)
|++.++..+ -+...|..++.. .+.|++++|+.+|+++.+.. |.+...|..++..+.+.|++++|..+|++++...
T Consensus 2 le~al~~~P-~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEENP-YDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhCC-CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 455555432 266688888874 67788888888888888653 6677788888888888888888888888888753
Q ss_pred CCHHhHHHHHHH-HHhcCCHHHHHH----HHHHHhcC-CCCC-CHhhHHHHHHHHHH---------cCChHHHHHHHHHH
Q 003020 424 PDIVSYRTLLYA-YSIRRMVCEAEE----LISEMDGG-GLEI-DEYTQSALTRMYIE---------AGMLEKSWLWFRRF 487 (856)
Q Consensus 424 ~~~~~~~~ll~~-~~~~g~~~~A~~----~~~~~~~~-~~~p-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~ 487 (856)
|+...|...+.. ....|+.++|.+ +|++.+.. |..| +...+...+..... .|+++.|..+|+++
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 577677666643 234566666554 66665542 4333 34455555554443 45666666666666
Q ss_pred HhcCCCCc--hhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH------HhCC
Q 003020 488 HLAGDMSS--EGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSM------TSHG 559 (856)
Q Consensus 488 ~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~~ 559 (856)
.. .|... ..|..........|. ..+ ..++. ...++++.|..++..+ .+..
T Consensus 157 l~-~P~~~~~~~~~~~~~~e~~~~~-~~~------------------~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CV-NPMINIEQLWRDYNKYEEGINI-HLA------------------KKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TT-SCCTTHHHHHHHHHHHHHHHCH-HHH------------------HHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred Hh-chhhhHHHHHHHHHHHHHhhch-hHH------------------HHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 55 22211 112111111100000 000 00000 1234566677666652 2221
Q ss_pred ---CCCC--------HHHHHHHHHHHHcC----CCh----HHHHHHHHHHHHcCCCCChHhHHHHHHHHHh-------cC
Q 003020 560 ---AVPD--------KCSYNSLIQILAGA----DLP----HMAKRYLRKMQEAGLVSDCIPYCAVISSYMK-------LG 613 (856)
Q Consensus 560 ---~~p~--------~~~~~~ll~~~~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g 613 (856)
++|+ ...|...+...... ++. +.+..+|++++... +.+...|..++..+.+ .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 2333 13444444333221 222 36677888877753 4467778888777765 68
Q ss_pred CHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCH
Q 003020 614 QLE-------MAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA-VIYNSLIKLYTKVGYL 685 (856)
Q Consensus 614 ~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 685 (856)
+++ +|..+|++.++.-.+.+...|..++..+.+.|++++|..+|+++++.. +.+. ..|...+..+.+.|++
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~ 372 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGI 372 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCH
Confidence 876 889999998862124467888888888888999999999999998853 2233 5788888888888999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003020 686 KEAQETYKLLRSLEASPDVYTSNCMIDL-YSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQM 764 (856)
Q Consensus 686 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 764 (856)
++|.++|++..+... .+...|...+.. +...|++++|..+|+++++..|.++..|..++..+.+.|+.++|..+|+++
T Consensus 373 ~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 373 KSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 999999998887432 222233222222 335889999999999988888888889999999888899999999999999
Q ss_pred HHcCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 765 RESGLI-S--DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 765 ~~~~~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
+...+. | ....|...+......|+.+.+..+++++++.
T Consensus 452 l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 887654 1 2347888888888889999999999888873
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-17 Score=183.82 Aligned_cols=429 Identities=8% Similarity=-0.019 Sum_probs=295.1
Q ss_pred HHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 003020 181 FEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGM 260 (856)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 260 (856)
|+.+.+.. |.+..+|..++. +.+.|++++|+.+|+++++..+. +...|...+..+.+.|++++|..+|+++++..
T Consensus 2 le~al~~~--P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~- 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV- 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-
T ss_pred hhhHhhhC--CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Confidence 45555553 568889999998 47889999999999999987544 78899999999999999999999999999874
Q ss_pred CccHHHHHHHHHH-HHhcCChhHHHH----HHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHh--
Q 003020 261 EPDEVTMGIVVQM-YKKAGEFQKAEE----FFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGK-- 333 (856)
Q Consensus 261 ~~~~~~~~~ll~~-~~~~g~~~~A~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 333 (856)
|+...|...+.. ....|+++.|.+ +|++.... -...+.+...|...+....+
T Consensus 77 -p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~--------------------~g~~~~~~~~w~~~~~~~~~~~ 135 (530)
T 2ooe_A 77 -LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK--------------------IGMEIMSYQIWVDYINFLKGVE 135 (530)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH--------------------TTTSTTCHHHHHHHHHHHHHSC
T ss_pred -CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH--------------------CCCCcccHHHHHHHHHHHhcCC
Confidence 566677777753 345688887776 66654321 00112356788888887665
Q ss_pred -------cCCHHHHHHHHHHHHHCCCCCCH---HhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003020 334 -------AGQLKEASETFAQMLREGIVPTT---VTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAK 403 (856)
Q Consensus 334 -------~g~~~~A~~~~~~~~~~g~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 403 (856)
.|++++|..+|++.++. |+. ..|..........|. .+...++. .+
T Consensus 136 ~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~ 190 (530)
T 2ooe_A 136 AVGSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DR 190 (530)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TT
T ss_pred CcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--Hh
Confidence 78899999999999873 332 233322221100110 00111110 12
Q ss_pred cCChHHHHHHHHHHH------HcC---CCCC--------HHhHHHHHHHHHhc----CCH----HHHHHHHHHHhcCCCC
Q 003020 404 NDKISMASRYFWKMK------EAN---LEPD--------IVSYRTLLYAYSIR----RMV----CEAEELISEMDGGGLE 458 (856)
Q Consensus 404 ~g~~~~A~~~~~~m~------~~~---~~~~--------~~~~~~ll~~~~~~----g~~----~~A~~~~~~~~~~~~~ 458 (856)
.++++.|..++.++. +.. ++|+ ...|...+...... ++. ..+..+|++++... +
T Consensus 191 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p 269 (530)
T 2ooe_A 191 SRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-G 269 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-T
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-C
Confidence 234455555544421 111 2232 13444433222211 222 36667777776642 2
Q ss_pred CCHhhHHHHHHHHHH-------cCChH-------HHHHHHHHHHh-cCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhc
Q 003020 459 IDEYTQSALTRMYIE-------AGMLE-------KSWLWFRRFHL-AGDMSSEGYSANIDGYGERGHVLEAERAFICCQE 523 (856)
Q Consensus 459 p~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 523 (856)
.++..+..++..+.. .|+++ +|..+|++... ..|.+...|..++..+.+.|++++|..+|+++..
T Consensus 270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~ 349 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 349 (530)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 356667777766665 57766 78888888886 5777888888888888888899999999988888
Q ss_pred CCCCcH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCChHHHHHHHHHHHHcCCCCChHh
Q 003020 524 GKKLTV-LVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQI-LAGADLPHMAKRYLRKMQEAGLVSDCIP 601 (856)
Q Consensus 524 ~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 601 (856)
..+.+. .+|..++..+.+.|++++|..+|++..+.. +.+...+...+.. +...|++++|..+|+..++.. +.++..
T Consensus 350 ~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~ 427 (530)
T 2ooe_A 350 IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEY 427 (530)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHH
T ss_pred ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHH
Confidence 777664 588888888888899999999999988752 2233333332222 335899999999999988764 346788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003020 602 YCAVISSYMKLGQLEMAEEVYKDMIRFNV-EP--DVVVYGVLINAFADVGNVKQAQSYFDAMESA 663 (856)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (856)
|..++..+.+.|+.++|..+|++++..+. .| ....|...+......|+.+.+..++.++.+.
T Consensus 428 ~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 428 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999999999999988642 22 3558888888888899999999999988775
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-18 Score=183.16 Aligned_cols=289 Identities=14% Similarity=0.077 Sum_probs=239.2
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 003020 526 KLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAV 605 (856)
Q Consensus 526 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 605 (856)
+.++..+..++..+...|++++|+.+|+++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3445566666777777777777777777776652 2244455566677777788888888888877754 3467788899
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003020 606 ISSYMKLG-QLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGY 684 (856)
Q Consensus 606 ~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 684 (856)
...+...| ++++|...|+++.+.. +.+...|..+...+...|++++|+..++++.+.. +.+...+..++..+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999999875 3467789999999999999999999999998874 4566778889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---------CCCHHHHHHHHHHHHHcCCHH
Q 003020 685 LKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG---------DANEFTYAMMLIMYKRNGRFE 755 (856)
Q Consensus 685 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~ 755 (856)
+++|...|+++.+... .+...+..++..+...|++++|...++++.+.. +.+..++..++.++...|+++
T Consensus 175 ~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999998542 457888999999999999999999999998754 556789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH-HHcC
Q 003020 756 EATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD-DFTFKSLGAVL-MKCG 822 (856)
Q Consensus 756 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~-~~~G 822 (856)
+|+..++++++..|. ++..+..++.+|...|++++|...++++++. .|+ ...+..+..++ ...|
T Consensus 254 ~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g 319 (330)
T 3hym_B 254 EALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIG 319 (330)
T ss_dssp HHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhC
Confidence 999999999999887 8899999999999999999999999999874 564 55677777777 4455
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-19 Score=191.41 Aligned_cols=307 Identities=9% Similarity=-0.074 Sum_probs=184.7
Q ss_pred HHHcCChHHHHH-HHHHHHhcCCCC----chhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCH
Q 003020 471 YIEAGMLEKSWL-WFRRFHLAGDMS----SEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNY 545 (856)
Q Consensus 471 ~~~~g~~~~a~~-~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 545 (856)
+...|++++|.. .|++.....+.+ ...+..++..+...|++++|+..|+++....|.+..+|..++.++...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 344455555555 555444333222 234455555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 546 DKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDM 625 (856)
Q Consensus 546 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (856)
++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.... +...+..+... . ..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~-------~~ 178 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------A-------GG 178 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------h-------hh
Confidence 55555555554432 123444444444444444444444444444443211 11111000000 0 00
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003020 626 IRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPP--NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD 703 (856)
Q Consensus 626 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 703 (856)
..+ ...+..+.. +...|++++|...|+++.+.. +. +..++..++..+...|++++|+..|+++.+.. +.+
T Consensus 179 ----~~~-~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 179 ----AGL-GPSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp ------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred ----hcc-cHHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 000 001112333 337788888888888887764 33 57888888888888899999998888888743 245
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------CH
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS----------DL 773 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----------~~ 773 (856)
...+..++.++...|++++|+..++++.+..|.+..++..++.+|...|++++|+..++++++..|.. ..
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 67788888888889999999999998888888888889999999999999999999999888876652 16
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 774 LSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 774 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
.+|..++.+|...|++++|..++++.++
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 7888899999999999998888775443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-18 Score=191.24 Aligned_cols=382 Identities=13% Similarity=-0.049 Sum_probs=168.8
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-----C-
Q 003020 356 TVTFNTMIHIYGNNDQLAEVDSLIKKMEEL--------HCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEA-----N- 421 (856)
Q Consensus 356 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~- 421 (856)
...|+.|..++...|++++|++.|++.++. ..+....+|+.+..+|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345666666666677777777776665532 11223445666666666666666666666655431 0
Q ss_pred -CCCCHHhHHHHHHHHHhc--CCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHH---HHcCChHHHHHHHHHHHhcCCCCc
Q 003020 422 -LEPDIVSYRTLLYAYSIR--RMVCEAEELISEMDGGGLEIDEYTQSALTRMY---IEAGMLEKSWLWFRRFHLAGDMSS 495 (856)
Q Consensus 422 -~~~~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~ 495 (856)
......++..+..++... +++++|++.|++.++..+. ++..+..+..++ ...++.++|+..+++....+|.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 001233444444333332 3455555555555543221 223333333222 223444445555555544444444
Q ss_pred hhhHHHHHHHh----hcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003020 496 EGYSANIDGYG----ERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLI 571 (856)
Q Consensus 496 ~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 571 (856)
.++..++..+. ..+++++|.+.++++....+....++..++..|.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~------------------------------- 258 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR------------------------------- 258 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH-------------------------------
Confidence 44443332222 2233344444444444444444444444444444
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003020 572 QILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVK 651 (856)
Q Consensus 572 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 651 (856)
..|++++|...+.++.+.. +.+..++..+..+|...+....+.. . ..........+.++
T Consensus 259 ----~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~----------~------~~~~~~~~~~~~~~ 317 (472)
T 4g1t_A 259 ----RKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLR----------E------NGMYGKRKLLELIG 317 (472)
T ss_dssp ----HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHH
T ss_pred ----HcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHH----------H------HHHHHHHHHHhhHH
Confidence 4444444444444444332 1123333333333321110000000 0 00000001112245
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHH
Q 003020 652 QAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVY--TSNCMID-LYSERSMVRQAEEIFE 728 (856)
Q Consensus 652 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~~~~ 728 (856)
+|...+++..+.. +.+..++..++..+...|++++|+..|+++++....+... .+..+.. .....|++++|+..++
T Consensus 318 ~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ 396 (472)
T 4g1t_A 318 HAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI 396 (472)
T ss_dssp HHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5666666655543 3344455566666666666666666666666543222111 1222222 1234566666666666
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 729 IMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 729 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
++++..|.+.... +..+.+.+++++.++.+|. ++.+|..++.+|...|++++|++.|+++++.
T Consensus 397 kal~i~~~~~~~~----------~~~~~l~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 397 EGVKINQKSREKE----------KMKDKLQKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHSCCCCHHHH----------HHHHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHhcCcccHHHH----------HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6666655543321 1223445556666666665 6667777777777777777777777777663
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.5e-18 Score=189.24 Aligned_cols=369 Identities=9% Similarity=-0.028 Sum_probs=216.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHc--------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCC-----
Q 003020 390 DTRTYNILIFLHAKNDKISMASRYFWKMKEA--------NLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGG----- 456 (856)
Q Consensus 390 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----- 456 (856)
....||.|...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|+..++++++..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456777777777777777777777766431 112234566667777777777777777666654310
Q ss_pred -CCC-CHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHH
Q 003020 457 -LEI-DEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNV 534 (856)
Q Consensus 457 -~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 534 (856)
..+ ...++...+.++...| .+++++|+..|+++.+..|.++..+..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~--------------------------------~~~y~~A~~~~~kal~~~p~~~~~~~~ 177 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCG--------------------------------GNQNERAKVCFEKALEKKPKNPEFTSG 177 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHC--------------------------------TTHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHc--------------------------------cccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 000 1223333332222221 223455555555555544555555444
Q ss_pred HHHHH---HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 003020 535 MVKAY---GMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAG----ADLPHMAKRYLRKMQEAGLVSDCIPYCAVIS 607 (856)
Q Consensus 535 li~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 607 (856)
+..++ ...++.++|++.|++..+.. +.+..++..+...+.. .+++++|.+.+++..+.. +.+..++..+..
T Consensus 178 ~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~ 255 (472)
T 4g1t_A 178 LAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAK 255 (472)
T ss_dssp HHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHH
Confidence 44432 23455566666666665542 1234444444433333 345666777777666653 345566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003020 608 SYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKE 687 (856)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 687 (856)
.|...|++++|+..|+++++.. +.+..++..+..+|...+... .... . ..........+.+++
T Consensus 256 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~---------~~~~-~------~~~~~~~~~~~~~~~ 318 (472)
T 4g1t_A 256 FYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQV---------MNLR-E------NGMYGKRKLLELIGH 318 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHH
T ss_pred HHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHh---------hhHH-H------HHHHHHHHHHhhHHH
Confidence 7888888888888888877754 235556666665553221111 0100 0 000111122344688
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH---HHHHHHHH-HHHcCCHHHHHHHHHH
Q 003020 688 AQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEF---TYAMMLIM-YKRNGRFEEATRIAKQ 763 (856)
Q Consensus 688 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~-~~~~g~~~~A~~~~~~ 763 (856)
|...|++..+... .+...+..++..+...|++++|++.|+++++..+++.. .+..++.. +...|++++|+..|++
T Consensus 319 A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~k 397 (472)
T 4g1t_A 319 AVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE 397 (472)
T ss_dssp HHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999888542 34456778999999999999999999999988765443 33444433 4578999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003020 764 MRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 764 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G 822 (856)
+++..+. +... .+....+..++++.++.. ..+..+|..++.++...|
T Consensus 398 al~i~~~-~~~~----------~~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g 444 (472)
T 4g1t_A 398 GVKINQK-SREK----------EKMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNE 444 (472)
T ss_dssp HHHSCCC-CHHH----------HHHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHH
T ss_pred HHhcCcc-cHHH----------HHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 9998766 3221 122244556667766642 334567999999999999
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9.4e-19 Score=187.68 Aligned_cols=309 Identities=14% Similarity=-0.003 Sum_probs=240.6
Q ss_pred HHHhcCCHHHHHH-HHHHHhcCCCC-C--CHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCC
Q 003020 435 AYSIRRMVCEAEE-LISEMDGGGLE-I--DEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGH 510 (856)
Q Consensus 435 ~~~~~g~~~~A~~-~~~~~~~~~~~-p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 510 (856)
++...|++++|++ .|++....... | +...+..++..+...|++++|...|+++....|.+..++..++..+...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5667799999999 88877654322 1 356788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 003020 511 VLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKM 590 (856)
Q Consensus 511 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 590 (856)
+++|+..|+++....|.+..++..++.++...|++++|+..|+++...... +...+..+... .. .
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h
Confidence 999999999999998999999999999999999999999999999986422 22222111000 00 0
Q ss_pred HHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003020 591 QEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEP-DVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA 669 (856)
Q Consensus 591 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 669 (856)
..+ ...+..+...+ ..|++++|...|+++.+..+.. +..++..+...+...|++++|+..|+++.+.. +.+.
T Consensus 179 ----~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 179 ----AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred ----hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 000 11112223333 7899999999999998864322 57899999999999999999999999998864 5678
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----------H
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN-----------E 738 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~ 738 (856)
.++..++.++...|++++|+..|+++.+... .+...+..++.+|...|++++|...++++.+..|.+ .
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 8999999999999999999999999988542 457788899999999999999999999998877666 7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 739 FTYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
.+|..++.+|...|++++|..++++.++
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 8999999999999999999999876543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=186.94 Aligned_cols=264 Identities=10% Similarity=-0.040 Sum_probs=162.0
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003020 497 GYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAG 576 (856)
Q Consensus 497 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 576 (856)
.+...+..+.+.|++++|+..|+++....|.+..+|..++.+|...|++++|+..|+++.+.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------ 128 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL------------------ 128 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------------------
Confidence 34444555555555555555555555444444555555555555555555555555554443
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHhc
Q 003020 577 ADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVE---------PDVVVYGVLINAFADV 647 (856)
Q Consensus 577 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~ 647 (856)
. +.+..++..+..+|...|++++|+..|+++++..+. .....+..+...+...
T Consensus 129 -----------------~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (365)
T 4eqf_A 129 -----------------Q-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS 190 (365)
T ss_dssp -----------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CC
T ss_pred -----------------C-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh
Confidence 2 123344444555555555555555555555443110 0122334456677777
Q ss_pred CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 648 GNVKQAQSYFDAMESAGLPP--NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEE 725 (856)
Q Consensus 648 g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 725 (856)
|++++|..+|+++.+.. +. +..++..++..+...|++++|+..|+++.+... .+..+|..++.+|...|++++|++
T Consensus 191 g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 191 SVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp HHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 78888888888777653 33 577777788888888888888888887777432 356677788888888888888888
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHH
Q 003020 726 IFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-----------DLLSYNNVLGLYAVDGRFKDVIG 794 (856)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~ 794 (856)
.++++.+..|.+..++..++.+|...|++++|+..++++++..|.. +...|..++.++...|+.+.+..
T Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 269 AYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8888887777778888888888888888888888888887765431 24677888888888888877776
Q ss_pred HHHH
Q 003020 795 TFKD 798 (856)
Q Consensus 795 ~~~~ 798 (856)
+.++
T Consensus 349 ~~~~ 352 (365)
T 4eqf_A 349 ANLG 352 (365)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 6654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-18 Score=184.42 Aligned_cols=254 Identities=9% Similarity=-0.012 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 565 CSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAF 644 (856)
Q Consensus 565 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 644 (856)
..+..+...+.+.|++++|...++++++.. +.+..++..+..+|...|++++|+..|+++++.. +.+..+|..++.+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 346666666777777777777777776654 3467788999999999999999999999999875 44688999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHH
Q 003020 645 ADVGNVKQAQSYFDAMESAGLPPN----------AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEAS-PDVYTSNCMIDL 713 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~ 713 (856)
...|++++|...|+++.+.. +.+ ...+..++..+...|++++|+..|+++.+.... ++...+..++..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 99999999999999998753 111 233445688999999999999999999985432 268899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003020 714 YSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVI 793 (856)
Q Consensus 714 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 793 (856)
+...|++++|++.++++.+..|.++.+|..++.+|...|++++|++.++++++..|. ++.+|..++.+|...|++++|+
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887 8899999999999999999999
Q ss_pred HHHHHHHHcC--C-CC--------CHHHHHHHHHHHHHcC
Q 003020 794 GTFKDMVNAA--I-QP--------DDFTFKSLGAVLMKCG 822 (856)
Q Consensus 794 ~~~~~~~~~g--~-~p--------~~~~~~~l~~~~~~~G 822 (856)
..|+++++.. . .| +...|..+..++...|
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 9999998831 0 11 2466899999999999
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=180.60 Aligned_cols=387 Identities=14% Similarity=0.126 Sum_probs=154.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCC
Q 003020 164 RSIILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGG 243 (856)
Q Consensus 164 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 243 (856)
+..++...|++++|.++++.+. + +.+|..++.++.+.|++++|+..|.+. +|..+|..++.++...|
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~~-----~--~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERCN-----E--PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhCC-----C--hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCC
Confidence 3445667788999999999872 2 248999999999999999999999653 47779999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhH
Q 003020 244 LKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYT 323 (856)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (856)
++++|+..++.+++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----------------------------~pn~~a 124 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-----------------------------GPNNAH 124 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-----------------------------CC----
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----------------------------CCcHHH
Confidence 999999988877774 4457788889999999999988887763 134468
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003020 324 YNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAK 403 (856)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 403 (856)
|+.++..|...|++++|...|..+ ..|..++.++.+.|++++|.+.+.++. ++.+|..++.+|..
T Consensus 125 ~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 125 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVD 189 (449)
T ss_dssp ------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHH
Confidence 888999999999999999998876 368888888888888888888888872 67888888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHc--CChHHHH
Q 003020 404 NDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEA--GMLEKSW 481 (856)
Q Consensus 404 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~a~ 481 (856)
.|+++.|......+. ..+.-...++..|.+.|.+++|+.+++..+... .-....++-+..+|++- +++.+.+
T Consensus 190 ~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl 263 (449)
T 1b89_A 190 GKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHL 263 (449)
T ss_dssp TTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888866554422 233334457777888888888888888877554 33444555555555543 3333333
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHH-------
Q 003020 482 LWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDS------- 554 (856)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------- 554 (856)
+.|..-....+ .++.. .....|..++-.|.+.++++.|....-+
T Consensus 264 ~~~~~~ini~k---------------------~~~~~--------~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~ 314 (449)
T 1b89_A 264 ELFWSRVNIPK---------------------VLRAA--------EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWK 314 (449)
T ss_dssp HHHSTTSCHHH---------------------HHHHH--------HTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCC
T ss_pred HHHHHHhcCcH---------------------HHHHH--------HHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhh
Confidence 33322211111 00000 1234455555555555555554442221
Q ss_pred ------HHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003020 555 ------MTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRF 628 (856)
Q Consensus 555 ------m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 628 (856)
+... ..+...|...+..|. +....++.-+...+... .| .+..+..+.+.|...-+...+..+...
T Consensus 315 ~~~f~~~~~k--v~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~--ld---~~r~v~~~~~~~~l~l~~~yl~~v~~~ 385 (449)
T 1b89_A 315 EGQFKDIITK--VANVELYYRAIQFYL--EFKPLLLNDLLMVLSPR--LD---HTRAVNYFSKVKQLPLVKPYLRSVQNH 385 (449)
T ss_dssp HHHHHHHHHH--CSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGG--CC---HHHHHHHHHHTTCTTTTHHHHHHHHTT
T ss_pred hHHHHHHHhc--hhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhc--cC---cHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 1111 234555666666665 22222222222222111 11 244555666777777777777666643
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 629 NVEPDVVVYGVLINAFADVGNVKQAQSY 656 (856)
Q Consensus 629 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 656 (856)
+ +..+=.++-..|....+++.-..-
T Consensus 386 n---~~~vnealn~l~ieeed~~~lr~s 410 (449)
T 1b89_A 386 N---NKSVNESLNNLFITEEDYQALRTS 410 (449)
T ss_dssp C---CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred h---HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 2 344444555556666666554433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-17 Score=168.24 Aligned_cols=252 Identities=10% Similarity=0.050 Sum_probs=153.8
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 003020 541 MGRNYDKACNLFDSMTSHGAVPDK--CSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMA 618 (856)
Q Consensus 541 ~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 618 (856)
..|++..|+..++++... .|+. .....+.+++...|+++.|+..++. .-+|+..++..+...+...|+.++|
T Consensus 11 ~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 345555555555544322 2221 2334445556666666666554432 1234455566666666666677777
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 619 EEVYKDMIRFNVEP-DVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 619 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
++.+++++..+..| +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|.+.|+++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777766554323 445555666666777777777776665 45666667777777777777777777777766
Q ss_pred CCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 698 LEASPDVYTS---NCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLL 774 (856)
Q Consensus 698 ~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 774 (856)
.. |+.... ..++..+...|++++|..+|+++.+..|.++..++.++.++.+.|++++|++.++++++..|. ++.
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~ 235 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPE 235 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH
Confidence 43 332211 112233334467777777777777777777777777777777777777777777777777766 777
Q ss_pred HHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHH
Q 003020 775 SYNNVLGLYAVDGRFKD-VIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 775 ~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g~~p~~~ 809 (856)
++..++.++...|++++ +.++++++++. .|+..
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~ 269 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP 269 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh
Confidence 77777777777777765 45677777663 55544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-17 Score=172.90 Aligned_cols=237 Identities=12% Similarity=0.082 Sum_probs=88.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHH
Q 003020 206 KARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEE 285 (856)
Q Consensus 206 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 285 (856)
+.|+.++|.+.++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5678899999998872 3358999999999999999999999763 477788888989999999999999
Q ss_pred HHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 003020 286 FFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHI 365 (856)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 365 (856)
+++...+ ..+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..
T Consensus 83 yl~~ark------------------------~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~ 131 (449)
T 1b89_A 83 YLQMARK------------------------KARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDR 131 (449)
T ss_dssp --------------------------------------------------CHHHHTTTTT-------CC-----------
T ss_pred HHHHHHH------------------------hCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHH
Confidence 7776542 12345778888999999999998888775 3677789999999
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 003020 366 YGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEA 445 (856)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A 445 (856)
|...|.+++|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|
T Consensus 132 ~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 132 CYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA 196 (449)
T ss_dssp -----CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHH
Confidence 99999999999999876 36888889999999999999988887 3778889999999999999888
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 003020 446 EELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGY 505 (856)
Q Consensus 446 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 505 (856)
......+ ...+.-...++..|.+.|++++|..++++.....+.....|+.++-.|
T Consensus 197 ~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~ 251 (449)
T 1b89_A 197 QMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 251 (449)
T ss_dssp HHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 5544432 223333445566666666666666666665544444444444443333
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-17 Score=173.20 Aligned_cols=280 Identities=13% Similarity=0.006 Sum_probs=192.9
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003020 496 EGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILA 575 (856)
Q Consensus 496 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 575 (856)
..+...+..+...|++++|...|+++....+.+..++..++.++...|++++|...|+++.+.. +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 4455566666666666666666666666656666666666666666666666666666665542 223444555555555
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHhcCCHHHH
Q 003020 576 GADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVL-IN-AFADVGNVKQA 653 (856)
Q Consensus 576 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~A 653 (856)
..|++++|...++++.+.... +...+..+... .|+......+ .. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 555555555555555443211 11111111000 0111111122 22 36677888999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003020 654 QSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKK 733 (856)
Q Consensus 654 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 733 (856)
...++++.+.. +.+..++..++..+...|++++|+..++++.+... .+...+..++..+...|++++|...++++.+.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999988764 55788888999999999999999999998887542 45778888999999999999999999999988
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 734 GDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-----------DLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 734 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
.|.+..++..++.++...|++++|++.++++++..|.. +..+|..++.+|...|++++|..++++.++
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 236 NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999887653 467889999999999999999998876544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-16 Score=162.75 Aligned_cols=275 Identities=12% Similarity=0.104 Sum_probs=209.2
Q ss_pred HHhhcCCHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHH
Q 003020 504 GYGERGHVLEAERAFICCQEGKKLT-VLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHM 582 (856)
Q Consensus 504 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 582 (856)
.....|++..|+..++......|.+ ......+..+|...|++++|+..++. .-+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3445566666666666554443333 34556667888888888888876654 134566777888888888888888
Q ss_pred HHHHHHHHHHcCC-CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 583 AKRYLRKMQEAGL-VSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAME 661 (856)
Q Consensus 583 A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 661 (856)
|++.++++...+. +.+...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|...|+++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888887764 34566677778889999999999999887 4577888899999999999999999999998
Q ss_pred HCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH
Q 003020 662 SAGLPPNAVIY---NSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANE 738 (856)
Q Consensus 662 ~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 738 (856)
+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.++.++...|++++|++.++++++..|.++
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 764 443211 223344455689999999999998863 36788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003020 739 FTYAMMLIMYKRNGRFEE-ATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTF 796 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 796 (856)
.++..++..+...|+.++ +.++++++++..|. ++.+.. ...+.+.++++..-|
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~-~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS-HPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-ChHHHH----HHHHHHHHHHHHHHc
Confidence 999999999999999876 57899999999887 665443 345555555555433
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.8e-17 Score=169.83 Aligned_cols=281 Identities=12% Similarity=-0.015 Sum_probs=229.8
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 003020 460 DEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAY 539 (856)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 539 (856)
+...+...+..+...|++++|...|+++....|.+..++..++..+...|++++|...|+++....+.+..++..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 44567788899999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHH--HHHhcCCHHH
Q 003020 540 GMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVIS--SYMKLGQLEM 617 (856)
Q Consensus 540 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~ 617 (856)
...|++++|+..|+++.+.... +...+..+... .++......+.. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 9999999999999999986322 22222221110 011111222212 3667788999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 618 AEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 618 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|+..|+++.+
T Consensus 157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998865 3478889999999999999999999999998764 56788899999999999999999999999888
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 698 LEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA------------NEFTYAMMLIMYKRNGRFEEATRIAKQMR 765 (856)
Q Consensus 698 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 765 (856)
... .+...+..++.++...|++++|.+.++++.+..|. +..+|..++.++...|++++|..++++.+
T Consensus 235 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 INP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 542 45778889999999999999999999999888777 68899999999999999999999987665
Q ss_pred H
Q 003020 766 E 766 (856)
Q Consensus 766 ~ 766 (856)
+
T Consensus 314 ~ 314 (327)
T 3cv0_A 314 E 314 (327)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-15 Score=152.36 Aligned_cols=224 Identities=14% Similarity=0.074 Sum_probs=169.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHHH
Q 003020 566 SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVE--PD----VVVYGV 639 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~~ 639 (856)
.+..+...+...|++++|...++++++.. .+..++..+..+|...|++++|+..|+++.+..+. ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44555555556666666666666655554 45566666666777777777777777776653211 11 467777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003020 640 LINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSM 719 (856)
Q Consensus 640 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 719 (856)
+...+...|++++|...|+++.+. .|+. ..+...|++++|...++.+..... .+...+..++..+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcC
Confidence 788888888888888888888774 3443 345666778888888888887431 245577788888899999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 720 VRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDM 799 (856)
Q Consensus 720 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 799 (856)
+++|+..++++.+..|.++.++..++.++...|++++|++.++++++..|. ++.+|..++.+|...|++++|...++++
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999888889999999999999999999999999999998877 7889999999999999999999999998
Q ss_pred HHc
Q 003020 800 VNA 802 (856)
Q Consensus 800 ~~~ 802 (856)
++.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 874
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.7e-16 Score=150.31 Aligned_cols=200 Identities=15% Similarity=0.059 Sum_probs=160.4
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003020 596 VSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSL 675 (856)
Q Consensus 596 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 675 (856)
+++...+..+...+.+.|++++|+..|+++++.. +.+...+..+..++.+.|++++|+..|++..+.. |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4566778888888889999999999999988865 3477888888889999999999999999988865 5677888888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003020 676 IKLYTKV-----------GYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMM 744 (856)
Q Consensus 676 ~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 744 (856)
+.++... |++++|+..|++..+..+ .+...+..+..++...|++++|+..|+++.+.. .++..+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHH
Confidence 9999888 999999999999988542 356788889999999999999999999999988 889999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 745 LIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMV 800 (856)
Q Consensus 745 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 800 (856)
+.+|...|++++|+..++++++..|. ++..+..++.++...|++++|+..+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999887 88999999999999999999999988764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-15 Score=152.43 Aligned_cols=239 Identities=13% Similarity=0.024 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC--CC----hHhH
Q 003020 529 VLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLV--SD----CIPY 602 (856)
Q Consensus 529 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~ 602 (856)
...|..++..+...|++++|+..|+++.+.. .+..++..+..++...|++++|...++++.+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567777777888888888888888877765 67777888888888888888888888887764321 12 4678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003020 603 CAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKV 682 (856)
Q Consensus 603 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 682 (856)
..+...|...|++++|...|+++.+. .|+. ..+...|++++|...++++.... +.+...+..++..+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88899999999999999999999885 3443 34666788999999999998864 45667889999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003020 683 GYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAK 762 (856)
Q Consensus 683 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 762 (856)
|++++|+..|+++.+... .+...+..++.++...|++++|+..++++.+..|.++.+|..++.++...|++++|.+.++
T Consensus 153 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999988543 4677888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcC------CCCCHHHHHHHHH
Q 003020 763 QMRESG------LISDLLSYNNVLG 781 (856)
Q Consensus 763 ~~~~~~------~~p~~~~~~~l~~ 781 (856)
++++.. |. +...+..+..
T Consensus 232 ~a~~~~~~~~~~p~-~~~~~~~l~~ 255 (258)
T 3uq3_A 232 AARTKDAEVNNGSS-AREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHTTTT-HHHHHHHHHH
T ss_pred HHHHhChhhcCCCc-hHHHHHHHHH
Confidence 999887 44 4455555543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-15 Score=166.14 Aligned_cols=346 Identities=12% Similarity=0.030 Sum_probs=197.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHH
Q 003020 397 LIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMV---CEAEELISEMDGGGLEIDEYTQSALTRMYIE 473 (856)
Q Consensus 397 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 473 (856)
+...+.+.|++++|.+.|++..+.| +...+..|...|...|+. ++|+..|++..+. ++..+..+..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4445555666666666666665543 223334444445555555 5666666555532 33344444443333
Q ss_pred cC-----ChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCH---
Q 003020 474 AG-----MLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNY--- 545 (856)
Q Consensus 474 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--- 545 (856)
.+ ++++|..+|++.. +.+.++ .+..+...|...+..
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa----------------------------------~~g~~~--A~~~Lg~~y~~~~~~~~~ 125 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAF----------------------------------ANGEGN--TLIPLAMLYLQYPHSFPN 125 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHH----------------------------------HTTCSS--CHHHHHHHHHHCGGGCTT
T ss_pred CCCCCCcCHHHHHHHHHHHH----------------------------------HCCCHH--HHHHHHHHHHhCCCCCCC
Confidence 33 3444555554444 432222 344444444433322
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC---CHHHHHHHH
Q 003020 546 DKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLG---QLEMAEEVY 622 (856)
Q Consensus 546 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~ 622 (856)
.++.+.+....+.| +......+...+...+.++.+......+.+.-...++..+..|...|...| ++++|+..|
T Consensus 126 ~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~ 202 (452)
T 3e4b_A 126 VNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQM 202 (452)
T ss_dssp CCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHH
Confidence 23444444444433 233455556666666644444443333322222234447777777787788 788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHH
Q 003020 623 KDMIRFNVEPDVVVYGVLINAFADV----GNVKQAQSYFDAMESAGLPPNAVIYNSLIKL-Y--TKVGYLKEAQETYKLL 695 (856)
Q Consensus 623 ~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~ 695 (856)
++..+.| .++...+..+...|... +++++|+.+|++.. . -+...+..+... + ...+++++|+++|++.
T Consensus 203 ~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~A 277 (452)
T 3e4b_A 203 EAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNG 277 (452)
T ss_dssp HHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHH
T ss_pred HHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 8888776 44555556666666544 67888888888876 3 355666666666 3 4578888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 003020 696 RSLEASPDVYTSNCMIDLYSERS-----MVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR----NGRFEEATRIAKQMRE 766 (856)
Q Consensus 696 ~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 766 (856)
.+.+ +...+..|...|. .| ++++|++.|+++. +.++.++..|+..|.. ..++++|.+.|+++.+
T Consensus 278 a~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 278 RAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 7754 5556667777776 44 8888888888877 6677788888877776 3488888888888887
Q ss_pred cCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 003020 767 SGLISDLLSYNNVLGLYAV----DGRFKDVIGTFKDMVNAA 803 (856)
Q Consensus 767 ~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 803 (856)
.| ++.....++.+|.. ..++++|..+|++..+.|
T Consensus 351 ~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 351 NG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred hC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 65 45667778877764 457888888888888766
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-14 Score=154.23 Aligned_cols=246 Identities=9% Similarity=0.021 Sum_probs=165.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 566 SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQ-LEMAEEVYKDMIRFNVEPDVVVYGVLINAF 644 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 644 (856)
.|..+..++...|++++|+..++++++.. +.+..+|..+..++...|+ +++|+..|+++++..+ .+...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 34445555555555666666666555543 2345556666677777775 7777777777776542 3666777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHH
Q 003020 645 ADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE-RSMVRQA 723 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A 723 (856)
...|++++|+..|+++++.+ +.+...|..++.++...|++++|+..|+++++... .+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHH
Confidence 77777777777777777664 55667777777777777777777777777777442 345667777777777 4554555
Q ss_pred -----HHHHHHHHhCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---------
Q 003020 724 -----EEIFEIMKKKGDANEFTYAMMLIMYKRNG--RFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDG--------- 787 (856)
Q Consensus 724 -----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------- 787 (856)
++.+++++...|.+..+|..++.++...| ++++|++.++++ +..+. ++..+..++.+|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~-~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS-SPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC-CHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC-CHHHHHHHHHHHHHHhcccccchHH
Confidence 47777887777888888888888887777 577888887777 55554 6677788888887764
Q ss_pred CHHHHHHHHHHH-HHcCCCCCHH-HHHHHHHHHH
Q 003020 788 RFKDVIGTFKDM-VNAAIQPDDF-TFKSLGAVLM 819 (856)
Q Consensus 788 ~~~~A~~~~~~~-~~~g~~p~~~-~~~~l~~~~~ 819 (856)
.+++|+++|+++ ++ +.|... .|..+...+.
T Consensus 333 ~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 333 ILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 247788888887 55 456544 3555555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-14 Score=147.30 Aligned_cols=246 Identities=10% Similarity=0.025 Sum_probs=182.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 003020 567 YNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEP--DVVVYGVLINAF 644 (856)
Q Consensus 567 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~ 644 (856)
+......+...|++++|+..++++++.. +.+...+..+..+|...|++++|+..|+++++....+ ...+|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445566667777777777777776653 2344567777778888888888888888887733222 234577888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003020 645 ADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAE 724 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 724 (856)
...|++++|+..|++..+.. +.+..++..++..|...|++++|+..|+++.+.. +.+...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887764 5566788888888999999999999988887753 245666777773444456999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcC---CCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 003020 725 EIFEIMKKKGDANEFTYAMMLIMYKRNGR---FEEATRIAKQMRESG---LISD----LLSYNNVLGLYAVDGRFKDVIG 794 (856)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~g~~~~A~~ 794 (856)
+.++++.+..|.+...+..++.++...|+ +++|+..++++++.. +.++ ..+|..++.+|...|++++|+.
T Consensus 163 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 163 SSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999998888888888889999988888 888999998888763 2221 2578888999999999999999
Q ss_pred HHHHHHHcCCCCCHHH-HHHHHHH
Q 003020 795 TFKDMVNAAIQPDDFT-FKSLGAV 817 (856)
Q Consensus 795 ~~~~~~~~g~~p~~~~-~~~l~~~ 817 (856)
.++++++. .|+... +..+...
T Consensus 243 ~~~~al~~--~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 243 AWKNILAL--DPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHH--CTTCHHHHHHHC--
T ss_pred HHHHHHhc--CccHHHHHHHhhhh
Confidence 99999884 566544 4444433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-14 Score=142.58 Aligned_cols=209 Identities=13% Similarity=0.042 Sum_probs=173.0
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003020 599 CIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKL 678 (856)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 678 (856)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3456777778888888888888888888764 3467788888888888999999999998887764 5577888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 679 YTKVGYLKEAQETYKLLRSLEASP-DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEA 757 (856)
Q Consensus 679 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 757 (856)
+...|++++|++.|+++.+.+..| +...+..++.++...|++++|.+.++++.+..|.+..++..++.++...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998887733334 4567778888889999999999999999988888889999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003020 758 TRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFK 812 (856)
Q Consensus 758 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 812 (856)
...++++++..+. +...+..++.++...|++++|.+.++++++. .|+...+.
T Consensus 195 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~ 246 (252)
T 2ho1_A 195 RQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHH
T ss_pred HHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHH
Confidence 9999999988776 7788888999999999999999999999884 56555443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-14 Score=142.45 Aligned_cols=199 Identities=18% Similarity=0.110 Sum_probs=149.5
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003020 562 PDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLI 641 (856)
Q Consensus 562 p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 641 (856)
++...+..+...+...|++++|...++++++.. +.+...+..+...+.+.|++++|+..|+++++.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 445566666666667777777777777766653 3456667777777778888888888888877764 33666777777
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003020 642 NAFADV-----------GNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCM 710 (856)
Q Consensus 642 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 710 (856)
.++... |++++|+..|++..+.. |.+...+..++.++...|++++|+..|+++.+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 778777 99999999999998864 5677889999999999999999999999999866 678888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 711 IDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMR 765 (856)
Q Consensus 711 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 765 (856)
+.++...|++++|+..++++.+..|.++.++..++.++...|++++|+..+++.-
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.9e-14 Score=136.87 Aligned_cols=212 Identities=10% Similarity=-0.012 Sum_probs=178.7
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003020 598 DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIK 677 (856)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 677 (856)
+...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45567788888889999999999999988764 3467788888999999999999999999988764 567788889999
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHH
Q 003020 678 LYTKV-GYLKEAQETYKLLRSLEASPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFE 755 (856)
Q Consensus 678 ~~~~~-g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 755 (856)
.+... |++++|+..++++.+.+..|+ ...+..++.++...|++++|+..++++.+..|.+..++..++.++...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 99999 999999999999887333343 5678888899999999999999999999988889999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003020 756 EATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKS 813 (856)
Q Consensus 756 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 813 (856)
+|.+.++++++..|..++..+..++..+...|+.++|..+++.+.+. .|+......
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~ 220 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 99999999999887237888888888999999999999999998874 566554433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-14 Score=151.76 Aligned_cols=254 Identities=10% Similarity=0.073 Sum_probs=210.5
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHcCCCCChHhHHH
Q 003020 526 KLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADL-PHMAKRYLRKMQEAGLVSDCIPYCA 604 (856)
Q Consensus 526 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~ 604 (856)
+....+|+.+..++...|++++|+..|+++++.. +-+..+|..+..++...|+ +++|+..++++++.. +.+...|..
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~ 171 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 3446778888888888888999999988888753 2256778888888888886 999999999888865 346778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cC
Q 003020 605 VISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTK-VG 683 (856)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g 683 (856)
+..++...|++++|+..|+++++.. +.+...|..+..++.+.|++++|+..|+++++.+ +.+...|+.++.++.. .|
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999876 3478899999999999999999999999999875 6688999999999998 66
Q ss_pred CHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC----
Q 003020 684 YLKEA-----QETYKLLRSLEASPDVYTSNCMIDLYSERS--MVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG---- 752 (856)
Q Consensus 684 ~~~~A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 752 (856)
..++| +..|+++++... .+...|..+..++...| ++++|++.++++ +..|.+..++..++.+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccc
Confidence 65777 588888888542 35678888888888888 689999999998 777999999999999999874
Q ss_pred -----CHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhc
Q 003020 753 -----RFEEATRIAKQM-RESGLISDLLSYNNVLGLYAVD 786 (856)
Q Consensus 753 -----~~~~A~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~ 786 (856)
.+++|+++++++ .+.+|. ....|..++..+...
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQSK 366 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHH
Confidence 358999999999 888776 667888888776543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-14 Score=144.65 Aligned_cols=253 Identities=14% Similarity=0.048 Sum_probs=124.0
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003020 497 GYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAG 576 (856)
Q Consensus 497 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 576 (856)
.+...+..+...|++++|+..|+.+.+..|.+..++..++.++...|++++|+..|++..+....|+.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------ 72 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA------------ 72 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH------------
Confidence 34444555555555555555555555555555555555555556666666666666655552211110
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 577 ADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSY 656 (856)
Q Consensus 577 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 656 (856)
....|..+...+...|++++|+..|+++.+.. +.+..+|..+...+...|++++|+..
T Consensus 73 ---------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 130 (272)
T 3u4t_A 73 ---------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQY 130 (272)
T ss_dssp ---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHH
Confidence 11124444444444455555555555544432 12334455555555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhC
Q 003020 657 FDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSM---VRQAEEIFEIMKKK 733 (856)
Q Consensus 657 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~ 733 (856)
|++..+.. +.+...+..++..+...+++++|++.|+++.+... .+...+..+..++...|+ +++|...++++.+.
T Consensus 131 ~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 131 MEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 55554432 33444444444222233355555555555554321 223444445555555554 45555555554443
Q ss_pred C---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003020 734 G---DA-----NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVD 786 (856)
Q Consensus 734 ~---~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 786 (856)
. |. ...+|..++..|...|++++|++.++++++..|. ++..+..+.......
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT-NKKAIDGLKMKLEHH 268 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHC------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-HHHHHHHhhhhhccc
Confidence 2 11 1135556666666666666666666666666665 666666555544433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-14 Score=157.29 Aligned_cols=347 Identities=12% Similarity=0.029 Sum_probs=154.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCH---HHHHHHHHH
Q 003020 270 VVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQL---KEASETFAQ 346 (856)
Q Consensus 270 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~ 346 (856)
+...+.+.|++++|...|++.... + +..++..|...|...|+. ++|+..|++
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~----------------------g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~ 63 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL----------------------G---YSEAQVGLADIQVGTRDPAQIKQAEATYRA 63 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------------------T---CCTGGGTCC---------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC----------------------C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHH
Confidence 344555666777777777665421 1 223444455555556666 677777777
Q ss_pred HHHCCCCCCHHhHHHHHHHHhcCC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHH---HHHHHHHHH
Q 003020 347 MLREGIVPTTVTFNTMIHIYGNND-----QLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISM---ASRYFWKMK 418 (856)
Q Consensus 347 ~~~~g~~p~~~~~~~ll~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~ 418 (856)
..+. +...+..+...+...+ ++++|...|++..+.|. ...+..|...|...+..+. +.+.+....
T Consensus 64 A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~ 136 (452)
T 3e4b_A 64 AADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQ 136 (452)
T ss_dssp -----------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHH
T ss_pred HHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 6643 4445555555344333 56677777777766542 2255555556655444332 333333333
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCCc
Q 003020 419 EANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAG---MLEKSWLWFRRFHLAGDMSS 495 (856)
Q Consensus 419 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~ 495 (856)
..| +...+..+...|...+.++++......+.+.-...++..+..+..+|...| +.++|+.+|++....++...
T Consensus 137 ~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a 213 (452)
T 3e4b_A 137 AAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA 213 (452)
T ss_dssp HHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH
T ss_pred HCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH
Confidence 332 334455555555555533333322222111111112235555555555555 55555555555555554444
Q ss_pred hhhHHHHHHHhhc----CCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003020 496 EGYSANIDGYGER----GHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLI 571 (856)
Q Consensus 496 ~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 571 (856)
..+..++..|... +++++|...|+++. +.++..+..+...|
T Consensus 214 ~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~-------------------------------- 258 (452)
T 3e4b_A 214 QRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLL-------------------------------- 258 (452)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHH--------------------------------
Confidence 4444444444333 44444544444444 23334444444431
Q ss_pred HHH--HcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 572 QIL--AGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLG-----QLEMAEEVYKDMIRFNVEPDVVVYGVLINAF 644 (856)
Q Consensus 572 ~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 644 (856)
+ ...+++++|...|++..+.| +...+..|...|. .| ++++|...|++.. +-+...+..+...|
T Consensus 259 --~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 259 --YDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIY 328 (452)
T ss_dssp --HHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHH
T ss_pred --HhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHH
Confidence 2 23445555555555544443 3444444444444 33 5566666665554 22444555555444
Q ss_pred Hh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 003020 645 AD----VGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTK----VGYLKEAQETYKLLRSLE 699 (856)
Q Consensus 645 ~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 699 (856)
.. ..++++|..+|++..+.|. ......|...|.. ..++++|..+|+...+.|
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 44 2256666666666655542 2233444444442 235666666666665544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.8e-13 Score=136.27 Aligned_cols=223 Identities=17% Similarity=0.074 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003020 564 KCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMK----LGQLEMAEEVYKDMIRFNVEPDVVVYGV 639 (856)
Q Consensus 564 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 639 (856)
..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +..++..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344445555555555555555555555552 234455566666666 777777777777777653 5666677
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003020 640 LINAFAD----VGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTK----VGYLKEAQETYKLLRSLEASPDVYTSNCMI 711 (856)
Q Consensus 640 l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 711 (856)
+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 7777777 777777777777777654 56677777777777 777888888877777744 455566677
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 712 DLYSE----RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR----NGRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783 (856)
Q Consensus 712 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 783 (856)
..|.. .+++++|+..++++.+.+ ++.++..++.+|.. .+++++|+..++++.+.+ ++..+..++.+|
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 77776 778888888888877663 56677778888888 888888888888888775 367778888888
Q ss_pred Hh----cCCHHHHHHHHHHHHHcC
Q 003020 784 AV----DGRFKDVIGTFKDMVNAA 803 (856)
Q Consensus 784 ~~----~g~~~~A~~~~~~~~~~g 803 (856)
.. .|++++|+..|++.++.|
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HcCCCcccCHHHHHHHHHHHHHcC
Confidence 87 888888888888887754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-14 Score=143.16 Aligned_cols=206 Identities=14% Similarity=0.149 Sum_probs=157.7
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003020 598 DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIK 677 (856)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 677 (856)
....+..+...+...|++++|...|+++++.. +.+...+..+...+...|++++|+..++++.+.. +.+..++..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44556777778888888999999888888764 3467788888888889999999999999888764 557788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 678 LYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEA 757 (856)
Q Consensus 678 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 757 (856)
.+...|++++|++.|+++.+... .+...+..++..+...|++++|...++++.+..|.+..++..++.++...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999988887542 45677888888899999999999999999888888889999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 758 TRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 758 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
+..++++++..+. ++.++..++.+|...|++++|...++++++. .|+..
T Consensus 179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 227 (243)
T 2q7f_A 179 LSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHM 227 (243)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchH
Confidence 9999999988876 7888999999999999999999999999884 55543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=8e-13 Score=134.59 Aligned_cols=227 Identities=13% Similarity=0.030 Sum_probs=185.8
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCChHhH
Q 003020 527 LTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAG----ADLPHMAKRYLRKMQEAGLVSDCIPY 602 (856)
Q Consensus 527 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 602 (856)
.++.++..+...+...|++++|+..|++..+. .+..++..+...+.. .+++++|...+++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 35666777777777777888888888877763 345667777777777 888888888888887765 66778
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003020 603 CAVISSYMK----LGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFAD----VGNVKQAQSYFDAMESAGLPPNAVIYNS 674 (856)
Q Consensus 603 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 674 (856)
..+...|.. .+++++|+..|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 888888888 889999999999988864 77788888888888 899999999999998875 5677788
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003020 675 LIKLYTK----VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE----RSMVRQAEEIFEIMKKKGDANEFTYAMMLI 746 (856)
Q Consensus 675 l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 746 (856)
+...|.. .+++++|+..|++..+.+ +...+..+..+|.. .+++++|++.++++.+.++ +..+..++.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~ 226 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGA 226 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 8888888 899999999999988853 45677788888988 9999999999999988754 678888999
Q ss_pred HHHH----cCCHHHHHHHHHHHHHcCCC
Q 003020 747 MYKR----NGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 747 ~~~~----~g~~~~A~~~~~~~~~~~~~ 770 (856)
+|.. .+++++|++.++++.+.++.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 9998 99999999999999998754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.62 E-value=7.2e-14 Score=132.78 Aligned_cols=174 Identities=14% Similarity=0.122 Sum_probs=149.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003020 633 DVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMID 712 (856)
Q Consensus 633 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 712 (856)
+..+|..+...|...|++++|+..|++.++.. |.+..++..++.+|...|++++|+..++.+..... .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 56788888888888899999999998888765 56778888888899999999999999988877442 45666777888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003020 713 LYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDV 792 (856)
Q Consensus 713 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 792 (856)
.+...++++.|.+.++++....|.+..++..++.+|...|++++|++.|+++++..|. ++.+|..++.+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence 8889999999999999999888999999999999999999999999999999999887 889999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHH
Q 003020 793 IGTFKDMVNAAIQPDDFTF 811 (856)
Q Consensus 793 ~~~~~~~~~~g~~p~~~~~ 811 (856)
+..|+++++ +.|+...|
T Consensus 161 ~~~~~~al~--~~p~~a~~ 177 (184)
T 3vtx_A 161 VKYFKKALE--KEEKKAKY 177 (184)
T ss_dssp HHHHHHHHH--TTHHHHHH
T ss_pred HHHHHHHHh--CCccCHHH
Confidence 999999988 46665443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.5e-16 Score=172.91 Aligned_cols=151 Identities=13% Similarity=0.125 Sum_probs=125.5
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003020 320 SSYTYNTLIDTYGKAGQLKEASETFAQMLR---EGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNI 396 (856)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 396 (856)
...|||+||++|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 357999999999999999999999988764 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCh-HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC------HhhHHHHHH
Q 003020 397 LIFLHAKNDKI-SMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEID------EYTQSALTR 469 (856)
Q Consensus 397 li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~ 469 (856)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+. ..++..+++ ..++.|+ ..+...+..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 78999999999999999999999998765544 344444444 3344443 334444555
Q ss_pred HHHHcC
Q 003020 470 MYIEAG 475 (856)
Q Consensus 470 ~~~~~g 475 (856)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=4.5e-14 Score=141.01 Aligned_cols=215 Identities=15% Similarity=0.095 Sum_probs=152.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003020 566 SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFA 645 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 645 (856)
++..+...+...|++++|...++++++.. +.+...+..+...+...|++++|...|+++.+.. +.+..++..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 34444445555555555555555555432 2345566677777777788888888888777654 336777888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 646 DVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEE 725 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 725 (856)
..|++++|...++++.+.. +.+...+..++..+...|++++|+..++++.+... .+...+..++..+...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888887764 55677888888888888999999988888877432 456778888888999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003020 726 IFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAV 785 (856)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 785 (856)
.++++.+..|.+..++..++.+|...|++++|.+.++++++..|. ++..+..+......
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHHHTC----
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHHHHHHHhh
Confidence 999998888888899999999999999999999999999998887 77777766554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-14 Score=143.55 Aligned_cols=245 Identities=11% Similarity=-0.011 Sum_probs=151.4
Q ss_pred cCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 003020 542 GRNYDKACNLFDSMTSHGAV---PDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMA 618 (856)
Q Consensus 542 ~g~~~~A~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 618 (856)
.|++++|+..|+++.+.... .+..++..+...+...|++++|...++++++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 34555555555555543211 123345555555555666666666665555543 23455666677777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003020 619 EEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSL 698 (856)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 698 (856)
...|+++++.. +.+..++..+...+...|++++|...|+++.+.. |+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 77777777653 2356677777777777777777777777776643 33333333344445667778888877666653
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 699 EASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD----ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLL 774 (856)
Q Consensus 699 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 774 (856)
.. ++...+ .++..+...++.++|...++++....+ .+..++..++.+|...|++++|+..++++++..|. +.
T Consensus 174 ~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~- 249 (275)
T 1xnf_A 174 SD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NF- 249 (275)
T ss_dssp SC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC-
T ss_pred CC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH-
Confidence 22 233333 355566667777778888877765543 23567888888888888888888888888887654 32
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 003020 775 SYNNVLGLYAVDGRFKDVIGTF 796 (856)
Q Consensus 775 ~~~~l~~~~~~~g~~~~A~~~~ 796 (856)
...+.++...|++++|++.+
T Consensus 250 --~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 --VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHhhHHHH
Confidence 33356777788888887766
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=6.6e-13 Score=133.39 Aligned_cols=207 Identities=15% Similarity=0.084 Sum_probs=158.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003020 566 SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFA 645 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 645 (856)
.+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+...+.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 34445555555566666666666555543 3345667777777888888888888888887764 336778888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003020 646 DVGNVKQAQSYFDAMESAGLPP-NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAE 724 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 724 (856)
..|++++|..+++++.+.+..| +...+..++.++...|++++|...|+++.+... .+...+..++..+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888887732233 557788888888899999999999988887542 35677888888999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003020 725 EIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSY 776 (856)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 776 (856)
..++++.+..|.+...+..++..+...|++++|.+.++++.+..|. ++...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 246 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG-SLEYQ 246 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-SHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-CHHHH
Confidence 9999999888888889999999999999999999999999988766 55443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.8e-14 Score=152.38 Aligned_cols=292 Identities=12% Similarity=0.048 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHc----CCC-CChH
Q 003020 530 LVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPD----KCSYNSLIQILAGADLPHMAKRYLRKMQEA----GLV-SDCI 600 (856)
Q Consensus 530 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~ 600 (856)
..+...+..+...|++++|+..|+++.+.... + ..++..+...+...|++++|...++++++. +.. ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 33444444455555555555555554443111 1 123444445555555555555555544322 101 1133
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 003020 601 PYCAVISSYMKLGQLEMAEEVYKDMIRFNVE-PD----VVVYGVLINAFADVGN--------------------VKQAQS 655 (856)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~ 655 (856)
++..+...|...|++++|...++++++.... ++ ..++..+...+...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4556666666777777777776666542100 11 3366667777777777 777777
Q ss_pred HHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 003020 656 YFDAMESA----GLP-PNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLE-ASPD----VYTSNCMIDLYSERSMVRQAEE 725 (856)
Q Consensus 656 ~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~~ 725 (856)
.+++..+. +.. ....++..++..+...|++++|+..++++.+.. -.++ ...+..++.++...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 77766431 111 123467777888888888888888888776521 1122 2367778888888888888888
Q ss_pred HHHHHHhCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHHHHH
Q 003020 726 IFEIMKKKGDAN------EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-D----LLSYNNVLGLYAVDGRFKDVIG 794 (856)
Q Consensus 726 ~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~ 794 (856)
.++++.+..+.. ..++..++..|...|++++|++.++++++..+.. + ..++..++.+|...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888877654222 5577888888889999999999888887653221 1 4577888888899999999999
Q ss_pred HHHHHHHc----CCCCC-HHHHHHHHHHHHHcC
Q 003020 795 TFKDMVNA----AIQPD-DFTFKSLGAVLMKCG 822 (856)
Q Consensus 795 ~~~~~~~~----g~~p~-~~~~~~l~~~~~~~G 822 (856)
.+++.++. +..+. ..++..+...+...|
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 88887762 22222 234667777777777
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.9e-11 Score=136.62 Aligned_cols=459 Identities=8% Similarity=-0.012 Sum_probs=300.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC---hHHHHH
Q 003020 336 QLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDK---ISMASR 412 (856)
Q Consensus 336 ~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~ 412 (856)
...+-+..|++.+..+. -|..+|..++..+.+.+.++.++.+|+++... .|.....|...+..-.+.|. ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 34455666677766654 38889999999888888999999999998865 36677888888888888888 899999
Q ss_pred HHHHHHHcC-CCCCHHhHHHHHHHHHhcCCH--------HHHHHHHHHHhc-CCC-CCC-HhhHHHHHHHHH--------
Q 003020 413 YFWKMKEAN-LEPDIVSYRTLLYAYSIRRMV--------CEAEELISEMDG-GGL-EID-EYTQSALTRMYI-------- 472 (856)
Q Consensus 413 ~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~--------~~A~~~~~~~~~-~~~-~p~-~~~~~~l~~~~~-------- 472 (856)
+|++.+... .+|++..|...+.-..+.++. +...++|+..+. .|. .++ ...+...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999988653 137777777776655555443 334467776654 354 443 345555554332
Q ss_pred -HcCChHHHHHHHHHHHhcCCCCc-hhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHH
Q 003020 473 -EAGMLEKSWLWFRRFHLAGDMSS-EGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACN 550 (856)
Q Consensus 473 -~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 550 (856)
..++++.+..+|++++....... ..|..........+.. .+.+.+.. ...+++.|..
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~-~a~~~~~e--------------------~~~~y~~Ar~ 263 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQL-TARRHIGE--------------------LSAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTT-THHHHHHH--------------------HHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcc-hHHHHHHH--------------------hhHHHHHHHH
Confidence 23345666677777663211111 1222111111100000 01111100 0123344445
Q ss_pred HHHHHHhC--CC----C-----------C-----C---HHHHHHHHHHHHcCC-------ChHHHHHHHHHHHHcCCCCC
Q 003020 551 LFDSMTSH--GA----V-----------P-----D---KCSYNSLIQILAGAD-------LPHMAKRYLRKMQEAGLVSD 598 (856)
Q Consensus 551 ~~~~m~~~--~~----~-----------p-----~---~~~~~~ll~~~~~~~-------~~~~A~~~~~~~~~~~~~~~ 598 (856)
.+.++... ++ + | + ...|...+..--..+ ..+.+..+|++++.. ++..
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~ 342 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFA 342 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTC
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCC
Confidence 44443211 11 0 1 0 123444443322222 123455678887775 3557
Q ss_pred hHhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------CCC
Q 003020 599 CIPYCAVISSYMKLGQLEMAE-EVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAG----------LPP 667 (856)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------~~p 667 (856)
...|...+..+...|+.++|. .+|++.+.. .+.+...|..++....+.|++++|.++|+++++.. .|.
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 788888888888899999997 999999875 35577788888888999999999999999987631 121
Q ss_pred -----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCC
Q 003020 668 -----------NAVIYNSLIKLYTKVGYLKEAQETYKLLRSL-EASPDVYTSNCMIDLYSER-SMVRQAEEIFEIMKKKG 734 (856)
Q Consensus 668 -----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 734 (856)
...+|...+....+.|..+.|..+|.++.+. +. +....|...+..-.+. ++.+.|..+|+..++..
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYF 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence 1346788888888899999999999999885 22 2233343333333333 45899999999999988
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003020 735 DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS--DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFK 812 (856)
Q Consensus 735 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 812 (856)
|.++..|...+......|+.+.|..+|++++...+.+ ....|...+..-...|+.+.+.++.+++.+. .|+.....
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~ 578 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLE 578 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHH
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHH
Confidence 9899999889998889999999999999999887632 3367888888888999999999999999985 56655555
Q ss_pred HHHHHHHHcC
Q 003020 813 SLGAVLMKCG 822 (856)
Q Consensus 813 ~l~~~~~~~G 822 (856)
.+.+-|.-.+
T Consensus 579 ~f~~ry~~~~ 588 (679)
T 4e6h_A 579 EFTNKYKVLD 588 (679)
T ss_dssp HHHHHTCBTT
T ss_pred HHHHHhcCCc
Confidence 5555444444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-11 Score=136.23 Aligned_cols=465 Identities=9% Similarity=0.036 Sum_probs=290.9
Q ss_pred HHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCC---HHHHHHHH
Q 003020 176 RALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGL---KEEAVCWL 252 (856)
Q Consensus 176 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~ 252 (856)
+-+..|+...... +.|..+|..++..+.+.+.++.+..+|++++..-+ .....|...+....+.|+ ++.+..+|
T Consensus 50 d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP-~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP-LMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3555667666664 67899999999999999999999999999998743 377889999999999999 99999999
Q ss_pred HHHHhCCC-CccHHHHHHHHHHHHhcCCh--------hHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhH
Q 003020 253 ERMNEGGM-EPDEVTMGIVVQMYKKAGEF--------QKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYT 323 (856)
Q Consensus 253 ~~~~~~~~-~~~~~~~~~ll~~~~~~g~~--------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (856)
++.+...+ +|++..|...+....+.++. +...++|+.+... + ..-...+...
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~---------------v----G~~d~~s~~i 187 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK---------------C----AIFEPKSIQF 187 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH---------------T----TTTCSSCHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---------------h----CcccccchHH
Confidence 99998742 47888888888776666654 3345777765431 0 0001224567
Q ss_pred HHHHHHHHH---------hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 003020 324 YNTLIDTYG---------KAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTY 394 (856)
Q Consensus 324 ~~~li~~~~---------~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 394 (856)
|...+.... .+++++.+..+|++.+......-..+|..........+ ...+.+++.+.
T Consensus 188 W~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~------------ 254 (679)
T 4e6h_A 188 WNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL------------ 254 (679)
T ss_dssp HHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH------------
T ss_pred HHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh------------
Confidence 888887654 23456778888888875211111122222211110000 01122221111
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHH--cCCC---CCH-HhHHHHHHHHHhcC-CHHHHHHHHHHHh---c-CCCCCCHhh
Q 003020 395 NILIFLHAKNDKISMASRYFWKMKE--ANLE---PDI-VSYRTLLYAYSIRR-MVCEAEELISEMD---G-GGLEIDEYT 463 (856)
Q Consensus 395 ~~li~~~~~~g~~~~A~~~~~~m~~--~~~~---~~~-~~~~~ll~~~~~~g-~~~~A~~~~~~~~---~-~~~~p~~~~ 463 (856)
..+++.|...+.++.. .++. |.. .+.+ . ...-..+ .....+.++.+.+ + .+...+...
T Consensus 255 ---------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~-~-~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~ 323 (679)
T 4e6h_A 255 ---------SAQYMNARSLYQDWLNITKGLKRNLPITLNQAT-E-SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDL 323 (679)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC-T-TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHH
T ss_pred ---------hHHHHHHHHHHHHHHHHHHhHhhccccccccch-h-ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchh
Confidence 1123334444443321 1110 000 0000 0 0000000 0001111111111 0 010001000
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHH-HHHHHHhcCCCCcHHHHHHHHHHHHcc
Q 003020 464 QSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAE-RAFICCQEGKKLTVLVFNVMVKAYGMG 542 (856)
Q Consensus 464 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~li~~~~~~ 542 (856)
..+.+..+|++++...|..++.|...+..+...|+.++|. .+|+++....|.+...|...+......
T Consensus 324 ------------~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~ 391 (679)
T 4e6h_A 324 ------------HKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELN 391 (679)
T ss_dssp ------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred ------------hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 1234456778888888888888888888888888888886 888888877777788888888888888
Q ss_pred CCHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHh
Q 003020 543 RNYDKACNLFDSMTSHG---------AVPD------------KCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIP 601 (856)
Q Consensus 543 g~~~~A~~~~~~m~~~~---------~~p~------------~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 601 (856)
|++++|.++|++++... ..|+ ..+|...+....+.|..+.|..+|..+++.-.......
T Consensus 392 ~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~l 471 (679)
T 4e6h_A 392 TKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDI 471 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHH
Confidence 88888888888877531 0132 23577777777788888999999999887611223344
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 003020 602 YCAVISSYMKLG-QLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPP--NAVIYNSLIKL 678 (856)
Q Consensus 602 ~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~ 678 (856)
|...+..-.+.+ +.+.|..+|+..++. .+.+...|..++......|+.+.|..+|++......++ ....|...+..
T Consensus 472 yi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~f 550 (679)
T 4e6h_A 472 YLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFF 550 (679)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 444443334444 589999999998876 34467778888888888899999999999988764222 34678888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 003020 679 YTKVGYLKEAQETYKLLRSLE 699 (856)
Q Consensus 679 ~~~~g~~~~A~~~~~~~~~~~ 699 (856)
-...|+.+.+.++++++.+.-
T Consensus 551 E~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 551 ESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 888899999999999988844
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-15 Score=167.38 Aligned_cols=118 Identities=11% Similarity=0.107 Sum_probs=68.2
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003020 599 CIPYCAVISSYMKLGQLEMAEEVYKDMIR---FNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSL 675 (856)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 675 (856)
..+|+++|++|++.|+.++|.++|++|.+ .|+.||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34556666666666666666666655432 245556666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003020 676 IKLYTKVGY-LKEAQETYKLLRSLEASPDVYTSNCMIDLYSE 716 (856)
Q Consensus 676 ~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 716 (856)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 666666555 34555666666665666666666555544443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-13 Score=139.49 Aligned_cols=227 Identities=14% Similarity=0.059 Sum_probs=190.0
Q ss_pred HcCCChHHHHHHHHHHHHcCCC---CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003020 575 AGADLPHMAKRYLRKMQEAGLV---SDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVK 651 (856)
Q Consensus 575 ~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 651 (856)
...|++++|+..++++++.... .+..++..+...+...|++++|...|+++++.. +.+..+|..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3457899999999999986421 245678899999999999999999999999875 347889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 652 QAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMK 731 (856)
Q Consensus 652 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 731 (856)
+|...|+++.+.. +.+..++..++.++...|++++|...|+++.+.. |+.......+..+...|++++|...++++.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999864 5578899999999999999999999999998844 444444445555677899999999999998
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003020 732 KKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS---DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDD 808 (856)
Q Consensus 732 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 808 (856)
...|++...+. ++..+...++.++|+..++++.+..+.. ++.+|..++.+|...|++++|...|+++++. .|+.
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 88877766655 7777888889999999999998765431 2578899999999999999999999999984 5643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-12 Score=128.12 Aligned_cols=208 Identities=10% Similarity=-0.012 Sum_probs=144.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003020 566 SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFA 645 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 645 (856)
.+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.+.. +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34444444444555555555555444432 2234556666677777777777777777777653 335667777777777
Q ss_pred hc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 646 DV-GNVKQAQSYFDAMESAGLPP-NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQA 723 (856)
Q Consensus 646 ~~-g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 723 (856)
.. |++++|...++++.+.+..| +...+..++.++...|++++|+..|+++.+... .+...+..++.++...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 78 88888888888777622223 356777788888888888888888888777432 3466777888888888888888
Q ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003020 724 EEIFEIMKKKGD-ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYN 777 (856)
Q Consensus 724 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 777 (856)
.+.++++.+..| .+...+..+...+...|+.++|..+++.+.+..|. ++....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~ 220 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY-SEELQT 220 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 888888888777 78888888888888888888888888888877665 554443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.55 E-value=6e-14 Score=152.66 Aligned_cols=270 Identities=10% Similarity=0.020 Sum_probs=179.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHc----C-CCCChHhH
Q 003020 532 FNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDK----CSYNSLIQILAGADLPHMAKRYLRKMQEA----G-LVSDCIPY 602 (856)
Q Consensus 532 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~ 602 (856)
+..+...+...|++++|+..|+++.+.... +. ..+..+...+...|++++|...++++++. + .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334444555555555555555555543211 11 23444555555555555555555554432 1 01123446
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHH
Q 003020 603 CAVISSYMKLGQLEMAEEVYKDMIRFN-----VEPDVVVYGVLINAFADVGN-----------------VKQAQSYFDAM 660 (856)
Q Consensus 603 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~ 660 (856)
..+...|...|++++|...|+++++.. .+....++..+...|...|+ +++|+..+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 666677777777777777777765431 11123467777777888888 88888877776
Q ss_pred HHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003020 661 ESA----GL-PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEA-SPD----VYTSNCMIDLYSERSMVRQAEEIFEIM 730 (856)
Q Consensus 661 ~~~----~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 730 (856)
.+. +. +....++..++..+...|++++|+..|++..+... .++ ...+..++.+|...|++++|.+.++++
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 442 11 11235778888889999999999999988766211 122 236778888999999999999999988
Q ss_pred HhCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 731 KKKGDA------NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-----DLLSYNNVLGLYAVDGRFKDVIGTFKDM 799 (856)
Q Consensus 731 ~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 799 (856)
....+. ...++..++.+|...|++++|+..++++++..... ...++..++.+|...|++++|...++++
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 765532 25678889999999999999999999998753221 1357888999999999999999999999
Q ss_pred HHc
Q 003020 800 VNA 802 (856)
Q Consensus 800 ~~~ 802 (856)
++.
T Consensus 370 l~~ 372 (411)
T 4a1s_A 370 LQL 372 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 884
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=4e-14 Score=153.62 Aligned_cols=301 Identities=15% Similarity=0.086 Sum_probs=192.6
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 003020 461 EYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYG 540 (856)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 540 (856)
...+...+..+...|++++|...|+++....+.+.... ..++..++..+.
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------~~~~~~l~~~~~ 58 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTL------------------------------SAIYSQLGNAYF 58 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHH------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHH------------------------------HHHHHHHHHHHH
Confidence 33444555555566666666666655554444332100 234444455555
Q ss_pred ccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----hHhHHHHHHHHH
Q 003020 541 MGRNYDKACNLFDSMTSH----GAVP-DKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLV-SD----CIPYCAVISSYM 610 (856)
Q Consensus 541 ~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~ 610 (856)
..|++++|+..|++.... +..| ...++..+...+...|++++|...+.++++.... .+ ..++..+...|.
T Consensus 59 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 138 (406)
T 3sf4_A 59 YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 138 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 555555555555443321 1111 1234455555555566666666555554432100 11 335667777777
Q ss_pred hcCC--------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003020 611 KLGQ--------------------LEMAEEVYKDMIRF----NVEP-DVVVYGVLINAFADVGNVKQAQSYFDAMESAGL 665 (856)
Q Consensus 611 ~~g~--------------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 665 (856)
..|+ +++|...+++..+. +..+ ...++..+...+...|++++|...+++..+...
T Consensus 139 ~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 139 AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 7777 88888887776542 1111 234778888889999999999999988865210
Q ss_pred -CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003020 666 -PPN----AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEA-SPD----VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD 735 (856)
Q Consensus 666 -~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 735 (856)
.++ ..++..++..+...|++++|...+++..+... .++ ..++..++..|...|++++|.+.++++.+..+
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 112 24788889999999999999999988775211 112 45778889999999999999999998876542
Q ss_pred --CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHH
Q 003020 736 --AN----EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-----DLLSYNNVLGLYAVDGRFKD 791 (856)
Q Consensus 736 --~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~ 791 (856)
.+ ..++..++.+|...|++++|.+.++++++..... ...++..++.++...|+...
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 22 5688899999999999999999999988752211 24678889999998887643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=145.10 Aligned_cols=268 Identities=12% Similarity=0.036 Sum_probs=177.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHc----CCC-CChHhHHH
Q 003020 534 VMVKAYGMGRNYDKACNLFDSMTSHGAVPD----KCSYNSLIQILAGADLPHMAKRYLRKMQEA----GLV-SDCIPYCA 604 (856)
Q Consensus 534 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~ 604 (856)
..+..+...|++++|+..|+++.+.... + ...+..+...+...|++++|...++++.+. +.. ....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3344444555555555555555443111 1 233444555555555555555555544322 111 12334666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 003020 605 VISSYMKLGQLEMAEEVYKDMIRFNV-EPD----VVVYGVLINAFADVGN--------------------VKQAQSYFDA 659 (856)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~ 659 (856)
+...|...|++++|...++++.+... .++ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 67777777777777777777654211 012 3366777777777787 8888888777
Q ss_pred HHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003020 660 MESA----GL-PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEA-SPD----VYTSNCMIDLYSERSMVRQAEEIFEI 729 (856)
Q Consensus 660 ~~~~----~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 729 (856)
.... +. +....++..++..+...|++++|...++++.+... .++ ...+..++..+...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6432 11 11235678888888999999999999988765211 122 33677888889999999999999998
Q ss_pred HHhCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 730 MKKKGDAN------EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI-SD----LLSYNNVLGLYAVDGRFKDVIGTFKD 798 (856)
Q Consensus 730 ~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 798 (856)
+....+.. ..++..++.++...|++++|...++++++..+. .+ ..++..++.+|...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 87654222 567888999999999999999999998875322 12 35788999999999999999999999
Q ss_pred HHHc
Q 003020 799 MVNA 802 (856)
Q Consensus 799 ~~~~ 802 (856)
+++.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 9884
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.7e-13 Score=145.87 Aligned_cols=201 Identities=9% Similarity=0.020 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003020 615 LEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNV-KQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYK 693 (856)
Q Consensus 615 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 693 (856)
+++++..+++..... +.+...+..+...+...|++ ++|+..|++..+.. +.+...|..++.+|...|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444433321 22444555555555555555 55555555554442 3334555555555555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc--------CCHHH
Q 003020 694 LLRSLEASPDVYTSNCMIDLYSER---------SMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN--------GRFEE 756 (856)
Q Consensus 694 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 756 (856)
++.+.. |+...+..+..++... |++++|++.++++.+..|.+..+|..++.+|... |++++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 555422 3344445555555555 5555555555555555555555555555555555 55555
Q ss_pred HHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcC
Q 003020 757 ATRIAKQMRESGL---ISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD-DFTFKSLGAVLMKCG 822 (856)
Q Consensus 757 A~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~G 822 (856)
|++.|+++++..| . ++..|..++.+|...|++++|+..|+++++. .|+ ...+..+..++...|
T Consensus 240 A~~~~~~al~~~p~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASS-NPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLS 306 (474)
T ss_dssp HHHHHHHHHHHCGGGGG-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence 5555555555544 3 4555555555555555555555555555542 333 223445555555555
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-12 Score=123.63 Aligned_cols=170 Identities=15% Similarity=0.094 Sum_probs=153.8
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003020 598 DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIK 677 (856)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 677 (856)
+..+|..+...|...|++++|+..|+++++.. +-+..++..+..+|.+.|++++|+..+....... +.+...+..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56789999999999999999999999999875 3478899999999999999999999999998764 567788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 678 LYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEA 757 (856)
Q Consensus 678 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 757 (856)
.+...++++.|...+++..+... .+...+..++.++...|++++|++.|+++.+..|.++.+|..++.+|...|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999888542 45778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 003020 758 TRIAKQMRESGLI 770 (856)
Q Consensus 758 ~~~~~~~~~~~~~ 770 (856)
++.|+++++..|.
T Consensus 161 ~~~~~~al~~~p~ 173 (184)
T 3vtx_A 161 VKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHTTHH
T ss_pred HHHHHHHHhCCcc
Confidence 9999999997643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-13 Score=147.91 Aligned_cols=213 Identities=12% Similarity=0.047 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 581 HMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQL-EMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDA 659 (856)
Q Consensus 581 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 659 (856)
+.+...++..... .+.+...+..+...|...|++ ++|+..|+++++.. +.+...|..+..+|...|++++|...|++
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444555544433 234666777788888888888 88888888888764 33677888888888888899999998888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CCHHH
Q 003020 660 MESAGLPPNAVIYNSLIKLYTKV---------GYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSER--------SMVRQ 722 (856)
Q Consensus 660 ~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~ 722 (856)
..+.. |+...+..+..++... |++++|++.|+++.+... .+...|..++.+|... |++++
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 88764 6678888888888888 999999999999888542 4577888888888888 99999
Q ss_pred HHHHHHHHHhCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 723 AEEIFEIMKKKGD---ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDM 799 (856)
Q Consensus 723 A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 799 (856)
|++.|+++.+..| .++.+|..++.+|...|++++|++.|+++++..|. ++..+..++.++...|++++|+..+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999888 89999999999999999999999999999999987 8889999999999999999998876544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=148.85 Aligned_cols=238 Identities=15% Similarity=0.072 Sum_probs=157.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC-----CCCChH
Q 003020 531 VFNVMVKAYGMGRNYDKACNLFDSMTSH----GA-VPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAG-----LVSDCI 600 (856)
Q Consensus 531 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~ 600 (856)
++..++..|...|++++|+..|++..+. +. .....++..+...+...|++++|...++++++.. .+....
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 167 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 3444444444445555555444443321 00 1122344455555555555555555555544321 011233
Q ss_pred hHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003020 601 PYCAVISSYMKLGQ-----------------LEMAEEVYKDMIRF----NVEP-DVVVYGVLINAFADVGNVKQAQSYFD 658 (856)
Q Consensus 601 ~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 658 (856)
++..+...|...|+ +++|+..+++..+. +..+ ...++..+...+...|++++|...++
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 56677777777777 78887777776542 1111 23477788888999999999999998
Q ss_pred HHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003020 659 AMESAGL-PPN----AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEA-SPD----VYTSNCMIDLYSERSMVRQAEEIFE 728 (856)
Q Consensus 659 ~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~ 728 (856)
+..+... .++ ..++..++.+|...|++++|+..|+++.+... ..+ ...+..+..++...|++++|.+.++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8865310 012 23788889999999999999999988776211 111 4577888899999999999999999
Q ss_pred HHHhCC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003020 729 IMKKKG------DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESG 768 (856)
Q Consensus 729 ~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 768 (856)
++.... +....++..++.+|...|++++|.+.++++++..
T Consensus 328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 887654 1224578889999999999999999999999874
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-11 Score=126.86 Aligned_cols=218 Identities=11% Similarity=0.036 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHHHH-------hcCCH-------HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 003020 581 HMAKRYLRKMQEAGLVSDCIPYCAVISSYM-------KLGQL-------EMAEEVYKDMIR-FNVEPDVVVYGVLINAFA 645 (856)
Q Consensus 581 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 645 (856)
+.|...|+++++.. +.++..|..++..+. +.|++ ++|..+|++.++ .. +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34445555555432 334445555555443 34664 788888888887 33 335668888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHH
Q 003020 646 DVGNVKQAQSYFDAMESAGLPPNAV-IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYS-ERSMVRQA 723 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A 723 (856)
..|++++|..+|+++++.. +.+.. .|..++..+.+.|++++|..+|+++.+... ++...|...+.... ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888753 22333 788888888888888888888888887543 33344443333322 26888888
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 724 EEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESG-LIS--DLLSYNNVLGLYAVDGRFKDVIGTFKDMV 800 (856)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 800 (856)
..+|+++++..|.++..|..++..+.+.|++++|..+|+++++.. ..| ....|..++..+.+.|++++|..++++++
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888863 222 45678888888888888888888888888
Q ss_pred Hc
Q 003020 801 NA 802 (856)
Q Consensus 801 ~~ 802 (856)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.8e-13 Score=139.48 Aligned_cols=268 Identities=15% Similarity=0.102 Sum_probs=170.5
Q ss_pred HHHHhhcCCHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 003020 502 IDGYGERGHVLEAERAFICCQEGKKLT----VLVFNVMVKAYGMGRNYDKACNLFDSMTSH----GAVP-DKCSYNSLIQ 572 (856)
Q Consensus 502 ~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~ 572 (856)
+..+...|++++|+..|+++....+.+ ..++..++..+...|++++|+..+++..+. +..| ...++..+..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 333444444444444444444333333 234455555555555555555555554322 1111 1334555556
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCC-CC----hHhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH
Q 003020 573 ILAGADLPHMAKRYLRKMQEAGLV-SD----CIPYCAVISSYMKLGQ--------------------LEMAEEVYKDMIR 627 (856)
Q Consensus 573 ~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~ 627 (856)
.+...|++++|...+.+..+.... ++ ..++..+...|...|+ +++|...+++...
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 666666666666666665442110 11 2356667777777777 7888877777653
Q ss_pred C----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 628 F----NVEP-DVVVYGVLINAFADVGNVKQAQSYFDAMESA----GLP-PNAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 628 ~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
. +..+ ...++..+...+...|++++|...+++..+. +.+ ....++..++..+...|++++|...+++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 1111 2347777888888999999999999887653 101 1124788888999999999999999988765
Q ss_pred CCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 698 LEA-SPD----VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD--A----NEFTYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 698 ~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
... .++ ...+..+...+...|++++|...++++.+..+ . ...++..++.+|...|++++|...++++++
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 211 112 45677888899999999999999998876541 1 245788899999999999999999999998
Q ss_pred cCC
Q 003020 767 SGL 769 (856)
Q Consensus 767 ~~~ 769 (856)
...
T Consensus 332 ~~~ 334 (338)
T 3ro2_A 332 ISR 334 (338)
T ss_dssp C--
T ss_pred HHH
Confidence 753
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-12 Score=146.76 Aligned_cols=166 Identities=17% Similarity=0.086 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003020 633 DVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMID 712 (856)
Q Consensus 633 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 712 (856)
+..+|+.+...+.+.|++++|+..|++.++.. +-+..+|..++.+|.+.|++++|++.|+++++... .+...|..++.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45688899999999999999999999998864 55678899999999999999999999999988542 34778899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003020 713 LYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDV 792 (856)
Q Consensus 713 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 792 (856)
+|...|++++|++.|+++++..|.+..+|..++.+|...|++++|++.|+++++..|. ++..|..++.+|...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988 889999999999999999999
Q ss_pred HHHHHHHHH
Q 003020 793 IGTFKDMVN 801 (856)
Q Consensus 793 ~~~~~~~~~ 801 (856)
.+.++++++
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998876
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.2e-13 Score=137.72 Aligned_cols=247 Identities=15% Similarity=0.135 Sum_probs=125.5
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC
Q 003020 526 KLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSH-------GAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSD 598 (856)
Q Consensus 526 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 598 (856)
+....++..++..+...|++++|+.+|+++.+. ..+....++..+...+...|++++|...++++++..
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---- 99 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR---- 99 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----
Confidence 344677788888888888888888888877652 111123344445555555555555555555444320
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHH
Q 003020 599 CIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESA------GL-PPNAVI 671 (856)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~p~~~~ 671 (856)
+.......+....++..+...+...|++++|...++++.+. +. +....+
T Consensus 100 ------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 100 ------------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp ------------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ------------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 00000000112234444555555555555555555554432 11 112244
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---------C
Q 003020 672 YNSLIKLYTKVGYLKEAQETYKLLRSL------EASPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKKG---------D 735 (856)
Q Consensus 672 ~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~ 735 (856)
+..++..+...|++++|+++|+++.+. +..|. ...+..++.+|...|++++|.+.++++.+.. +
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 555555666666666666666555442 11121 2345555666666666666666666655421 1
Q ss_pred C------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 736 A------NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 736 ~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
. ....+..+...+...+.+.+|...+++.....+. ...++..++.+|...|++++|..+++++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 1122333344445556667777777777765544 567788888888888888888888888776
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.4e-12 Score=135.60 Aligned_cols=229 Identities=10% Similarity=0.000 Sum_probs=171.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHc----CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-----CHHHHH
Q 003020 570 LIQILAGADLPHMAKRYLRKMQEA----GLVS-DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVE-P-----DVVVYG 638 (856)
Q Consensus 570 ll~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-----~~~~~~ 638 (856)
....+...|++++|...++++.+. +..+ ...++..+...|...|++++|+..++++++.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 555677788888888888887764 1111 2346788888889999999999999888753111 1 235788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHH
Q 003020 639 VLINAFADVGNVKQAQSYFDAMESA----GLPP-NAVIYNSLIKLYTKVGYLKEAQETYKLLRSL----EA-SPDVYTSN 708 (856)
Q Consensus 639 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~ 708 (856)
.+...|...|++++|...|++..+. +-++ ...++..++.+|...|++++|+..|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888999999999999999888653 1111 1247888999999999999999999888762 22 23356788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKKG-----DANEFTYAMMLIMYKRNGR---FEEATRIAKQMRESGLIS-DLLSYNNV 779 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l 779 (856)
.++.++...|++++|.+.++++.+.. +.....+..++..+...|+ +++|+.++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 89999999999999999999887653 2223346778888889998 77777777766 2222 23577889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 003020 780 LGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 780 ~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+.+|...|++++|...++++++
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999877
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=7.9e-11 Score=122.01 Aligned_cols=221 Identities=12% Similarity=0.031 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------cCCCh-------HHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 003020 546 DKACNLFDSMTSHGAVPDKCSYNSLIQILA-------GADLP-------HMAKRYLRKMQEAGLVSDCIPYCAVISSYMK 611 (856)
Q Consensus 546 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 611 (856)
++|+.+|++.+... +.+...|..++..+. ..|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555555555431 223444444444443 34554 6777777777763123345567777788888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 003020 612 LGQLEMAEEVYKDMIRFNVEPDVV-VYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYT-KVGYLKEAQ 689 (856)
Q Consensus 612 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~ 689 (856)
.|++++|..+|+++++..+. +.. +|..++..+.+.|++++|..+|++..+.+ +++...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888875321 333 78888888888888888888888887764 444555544433322 368888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 690 ETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG--D--ANEFTYAMMLIMYKRNGRFEEATRIAKQMR 765 (856)
Q Consensus 690 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 765 (856)
.+|+++++... .+...|..++..+.+.|++++|..+|+++.... + .....|..++..+...|+.++|..++++++
T Consensus 190 ~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888877432 356777888888888888888888888888852 3 256788888888888888888888888888
Q ss_pred HcCCC
Q 003020 766 ESGLI 770 (856)
Q Consensus 766 ~~~~~ 770 (856)
+..|.
T Consensus 269 ~~~p~ 273 (308)
T 2ond_A 269 TAFRE 273 (308)
T ss_dssp HHTTT
T ss_pred HHccc
Confidence 87765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-11 Score=116.79 Aligned_cols=165 Identities=16% Similarity=0.072 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003020 635 VVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLY 714 (856)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 714 (856)
..+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456667777788888888888888877653 4567778888888888888888888888887743 24566777888888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003020 715 SERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIG 794 (856)
Q Consensus 715 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 794 (856)
...|++++|.+.++++.+..|.+...+..++.++...|++++|+..++++++..+. ++.++..++.++...|++++|..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHH
Confidence 88899999999998888888888888888999999999999999999999888776 78888899999999999999999
Q ss_pred HHHHHHHc
Q 003020 795 TFKDMVNA 802 (856)
Q Consensus 795 ~~~~~~~~ 802 (856)
.++++++.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99988773
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-11 Score=120.93 Aligned_cols=202 Identities=13% Similarity=0.091 Sum_probs=138.7
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003020 597 SDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLI 676 (856)
Q Consensus 597 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 676 (856)
.|+..+......+...|++++|+..|+++++..++++...+..+..++...|++++|+..|++..+.. |.+...+..++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 34566667777777777777777777777776543566666667777777888888888887777764 44556777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHH
Q 003020 677 KLYTKVGYLKEAQETYKLLRSLEASPDV-------YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA--NEFTYAMMLIM 747 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 747 (856)
.++...|++++|+..|++..+... .+. ..|..+...+...|++++|++.++++.+..|. ++.+|..++.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 778888888888888877776432 223 34667777777888888888888888877777 67778888877
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 748 YKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFT 810 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 810 (856)
|...| ..+++++...+.. +...|... .....|.+++|+..+++.++. .|+...
T Consensus 163 ~~~~~-----~~~~~~a~~~~~~-~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l--~p~~~~ 215 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLASS-NKEKYASE--KAKADAAFKKAVDYLGEAVTL--SPNRTE 215 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTTT-CHHHHHHH--HHHHHHHHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHH-----HHHHHHHHhcccC-CHHHHHHH--HHHHHHHHHHHHHHHHHHhhc--CCCCHH
Confidence 76544 3445555555544 44444333 234556678888888888874 565544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.6e-13 Score=140.03 Aligned_cols=250 Identities=15% Similarity=0.152 Sum_probs=149.2
Q ss_pred CCCchhhHHHHHHHhhcCCHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----
Q 003020 492 DMSSEGYSANIDGYGERGHVLEAERAFICCQE--------GKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSH----- 558 (856)
Q Consensus 492 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 558 (856)
|....++..++..+...|++++|...|+++.. ..+....++..++..|...|++++|+..|++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 44556788899999999999999999999887 34556788999999999999999999999998763
Q ss_pred -CCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003020 559 -GAVP-DKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVV 636 (856)
Q Consensus 559 -~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 636 (856)
+..| ...++..+...+...|++++|...++++.+.. +.......+....+
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLGKDHPDVAKQ 155 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHCTTCHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhcCCCChHHHHH
Confidence 1111 23344445555555555555555554443320 00000000112334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC
Q 003020 637 YGVLINAFADVGNVKQAQSYFDAMESA------G-LPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSL-------EASP 702 (856)
Q Consensus 637 ~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p 702 (856)
+..+...+...|++++|..+++++.+. + .+....++..++.++...|++++|...|+++.+. ...+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 555555666666666666666655442 1 1112345666666666677777777766666542 1111
Q ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003020 703 D-------VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 703 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 769 (856)
. ...+..+...+...+.+.+|...++......|.+..++..++.+|...|++++|++.++++++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 1 112223333444566667777778877777677788899999999999999999999999987643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-11 Score=131.44 Aligned_cols=299 Identities=11% Similarity=0.036 Sum_probs=164.7
Q ss_pred HHhcCCHHHHHHHHHHHHHC--CCCCCH--HhHHHHHHH--HhcCCCHHHHH-----------HHHHHHHhCCCCCCHH-
Q 003020 331 YGKAGQLKEASETFAQMLRE--GIVPTT--VTFNTMIHI--YGNNDQLAEVD-----------SLIKKMEELHCPPDTR- 392 (856)
Q Consensus 331 ~~~~g~~~~A~~~~~~~~~~--g~~p~~--~~~~~ll~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~- 392 (856)
+.+.+++++|..+++++.+. .+..|. ..|..++.. ..-.++++.+. +.++.+... +.+..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence 34689999999999998664 232333 333333322 11223333333 555555432 11111
Q ss_pred -----HHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-C--
Q 003020 393 -----TYNILIFLHAKNDKISMASRYFWKMKEA----NLEP-DIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLE-I-- 459 (856)
Q Consensus 393 -----~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p-- 459 (856)
.+......+...|++++|+..|++..+. +-++ ...+|..+...|...|++++|+..+.+.++.-.. +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 1222445667778888888888877652 1111 2356777777778888888888877777542111 1
Q ss_pred ---CHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 003020 460 ---DEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMV 536 (856)
Q Consensus 460 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 536 (856)
...++..++.+|...|++++|...|+++....+...+ .+....++..++
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------------~~~~~~~~~~lg 231 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ----------------------------PQLMGRTLYNIG 231 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------------------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC----------------------------hHHHHHHHHHHH
Confidence 1235556666666666666666666655422111000 001123555555
Q ss_pred HHHHccCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC----CCCChHhHHHHHH
Q 003020 537 KAYGMGRNYDKACNLFDSMTSH----GA-VPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAG----LVSDCIPYCAVIS 607 (856)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~ 607 (856)
.+|...|++++|+..|++..+. +. +....++..+...+...|++++|...+++.++.. .+.....+..+..
T Consensus 232 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ 311 (383)
T 3ulq_A 232 LCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKS 311 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666666666665555441 11 2234455556666666666666666666554421 1111222455666
Q ss_pred HHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 608 SYMKLGQ---LEMAEEVYKDMIRFNVEPD-VVVYGVLINAFADVGNVKQAQSYFDAMES 662 (856)
Q Consensus 608 ~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 662 (856)
.|...|+ +++|+.++++. +..|+ ...+..+...|...|++++|...|++..+
T Consensus 312 ~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 312 LYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6777777 66666666655 22222 33666777778888888888888877754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.8e-11 Score=119.26 Aligned_cols=157 Identities=11% Similarity=-0.036 Sum_probs=130.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003020 632 PDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMI 711 (856)
Q Consensus 632 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 711 (856)
.|+..+......+...|++++|+..|++..+...+++...+..++.++...|++++|+..|++..+... .+...+..++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 466788888889999999999999999998875337888888899999999999999999999988542 2456788889
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 003020 712 DLYSERSMVRQAEEIFEIMKKKGDANE-------FTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-DLLSYNNVLGLY 783 (856)
Q Consensus 712 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 783 (856)
.++...|++++|++.++++.+..|.++ .+|..++..+...|++++|++.++++++..|.. ++..|..++.+|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 999999999999999999999888888 568888999999999999999999999875420 247888888888
Q ss_pred HhcCCH
Q 003020 784 AVDGRF 789 (856)
Q Consensus 784 ~~~g~~ 789 (856)
...|+.
T Consensus 164 ~~~~~~ 169 (228)
T 4i17_A 164 YNNGAD 169 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-10 Score=123.41 Aligned_cols=269 Identities=14% Similarity=0.035 Sum_probs=174.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----hHhHH
Q 003020 533 NVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKC----SYNSLIQILAGADLPHMAKRYLRKMQEAGLV-SD----CIPYC 603 (856)
Q Consensus 533 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~ 603 (856)
......+...|++++|...+++........+.. ++..+...+...|++++|...+++..+.... .+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334445556666666666666665543222221 3445555666667777777766665542110 11 12245
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHH
Q 003020 604 AVISSYMKLGQLEMAEEVYKDMIRF----NVE--P-DVVVYGVLINAFADVGNVKQAQSYFDAMESAGLP----PNAVIY 672 (856)
Q Consensus 604 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~ 672 (856)
.+...+...|++++|...+++.++. +.. | ....+..+...+...|++++|...+++....... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6667778888888888888877653 111 2 2345666777888888888888888887653211 123567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C-HHHHH----HHHHHHHHcCCHHHHHHHHHHHHhCCCCC----HHHHH
Q 003020 673 NSLIKLYTKVGYLKEAQETYKLLRSLEASP-D-VYTSN----CMIDLYSERSMVRQAEEIFEIMKKKGDAN----EFTYA 742 (856)
Q Consensus 673 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~ 742 (856)
..+...+...|++++|...+++.......+ . ..... ..+..+...|++++|...++++....+.+ ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 778888888899999999888876531111 1 11111 23344678899999999988887655332 33567
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 743 MMLIMYKRNGRFEEATRIAKQMRESGLI----SDL-LSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 743 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
.++.++...|++++|...++++.+.... ++. ..+..++.++...|++++|...+++.++
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7888889999999999999888764221 122 3677788889999999999999988876
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=6.4e-11 Score=112.09 Aligned_cols=168 Identities=17% Similarity=0.080 Sum_probs=148.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 600 IPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLY 679 (856)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 679 (856)
..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 346677888889999999999999988764 3477889999999999999999999999998764 56788899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 680 TKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATR 759 (856)
Q Consensus 680 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 759 (856)
...|++++|.+.++++.+... .+...+..++.++...|++++|.+.++++.+..|.++.++..++.++...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999888542 5677888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCC
Q 003020 760 IAKQMRESGLI 770 (856)
Q Consensus 760 ~~~~~~~~~~~ 770 (856)
.++++++..|.
T Consensus 166 ~~~~~~~~~~~ 176 (186)
T 3as5_A 166 HFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHcCCC
Confidence 99999987655
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.2e-11 Score=137.07 Aligned_cols=167 Identities=10% Similarity=0.083 Sum_probs=151.3
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003020 598 DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIK 677 (856)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 677 (856)
+..+++.|...|.+.|++++|+..|+++++.. +-+..+|..+..+|.+.|++++|+..|++.++.+ +.+...|..++.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45678999999999999999999999999875 3367899999999999999999999999998875 567889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 678 LYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEA 757 (856)
Q Consensus 678 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 757 (856)
++...|++++|++.|+++++... .+...|..++.+|...|++++|++.|+++++..|.+..++..++.++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 99999999999999999998542 35778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc
Q 003020 758 TRIAKQMRES 767 (856)
Q Consensus 758 ~~~~~~~~~~ 767 (856)
.+.++++++.
T Consensus 165 ~~~~~kal~l 174 (723)
T 4gyw_A 165 DERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998864
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-10 Score=123.99 Aligned_cols=196 Identities=9% Similarity=0.052 Sum_probs=110.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 003020 602 YCAVISSYMKLGQLEMAEEVYKDMIRFNV-----EP-DVVVYGVLINAFADVGNVKQAQSYFDAMESA----GLPP-NAV 670 (856)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~ 670 (856)
+..+...|...|+++.|...++++++... .+ ...+++.+...|...|++++|...|++..+. +.++ ...
T Consensus 144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 223 (378)
T 3q15_A 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 44445555555555555555555443110 00 1235555666666666666666666655431 1111 124
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCHHH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRS-----LEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG-----DANEFT 740 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~ 740 (856)
++..++.+|...|++++|+..|++..+ ... ....++..++.++...|++++|...++++.+.. +.....
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 566666667777777777777666655 221 224556666677777777777777777666543 222334
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 741 YAMMLIMYKRNGR---FEEATRIAKQMRESGLISD-LLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 741 ~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+..+...+...|+ +++|+..+++. +..|+ ...+..++..|...|++++|...|+++++
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555566666666 66666666552 21112 24556777777788888888777777765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.7e-10 Score=120.04 Aligned_cols=165 Identities=11% Similarity=-0.108 Sum_probs=114.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHhHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CC---C-CHH
Q 003020 324 YNTLIDTYGKAGQLKEASETFAQMLREGI-VPT----TVTFNTMIHIYGNNDQLAEVDSLIKKMEELH--CP---P-DTR 392 (856)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~---~-~~~ 392 (856)
|-..+..+...|++++|+..|++..+... .++ ..++..+..+|...|+++.|...+.+..+.. .. + ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 44456667788999999999999876411 122 3477888888889999999998888877531 11 1 234
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCHh
Q 003020 393 TYNILIFLHAKNDKISMASRYFWKMKEA----NLE-PDIVSYRTLLYAYSIRRMVCEAEELISEMDG-----GGLEIDEY 462 (856)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~ 462 (856)
+++.+...|...|++++|.+.|++..+. +.+ ....++..+..+|...|++++|++.|++.++ .... ...
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHH
Confidence 6777888888888888888888877642 111 1234677777888888888888888888765 3222 255
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003020 463 TQSALTRMYIEAGMLEKSWLWFRRFHL 489 (856)
Q Consensus 463 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 489 (856)
++..++.++.+.|++++|...+++...
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666667777777777777777766654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-09 Score=117.24 Aligned_cols=167 Identities=12% Similarity=0.028 Sum_probs=87.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCC----ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHH--
Q 003020 567 YNSLIQILAGADLPHMAKRYLRKMQEAGLVS----DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPD--VVVYG-- 638 (856)
Q Consensus 567 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~-- 638 (856)
+..+...+...|++++|...+++.++..... ...++..+...+...|++++|...+++.......++ .....
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 217 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 217 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHH
Confidence 3344445555555555555555544332111 123455566666666666666666666654211111 11111
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHH
Q 003020 639 --VLINAFADVGNVKQAQSYFDAMESAGLPP---NAVIYNSLIKLYTKVGYLKEAQETYKLLRSL----EASPDV-YTSN 708 (856)
Q Consensus 639 --~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~ 708 (856)
..+..+...|++++|...+++.......+ ....+..+..++...|++++|...++.+... +..++. ..+.
T Consensus 218 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 297 (373)
T 1hz4_A 218 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 297 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 12233556677777777776665432111 1234556666777777777777777665441 211122 2455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKK 733 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~ 733 (856)
.+..++...|+.++|...++++...
T Consensus 298 ~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 298 LLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5666677777777777777776654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-11 Score=124.19 Aligned_cols=227 Identities=13% Similarity=0.100 Sum_probs=158.1
Q ss_pred HcCCChHHHHHHHHHHHHc-------CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHH
Q 003020 575 AGADLPHMAKRYLRKMQEA-------GLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRF------NV-EPDVVVYGVL 640 (856)
Q Consensus 575 ~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 640 (856)
...|++++|+..+++.++. ..+....++..+...|...|++++|+..|+++++. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777888777776652 22234556888888999999999999999998764 21 2234578888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHH
Q 003020 641 INAFADVGNVKQAQSYFDAMESA------G-LPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSL------EASP-DVYT 706 (856)
Q Consensus 641 ~~~~~~~g~~~~A~~~~~~~~~~------~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~ 706 (856)
...|...|++++|...++++.+. . .+....++..++..+...|++++|+..|+++.+. +..| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88999999999999999988764 1 1234567888889999999999999999888764 1123 2457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC---------CCCCHHHHHHHHHHHHHcCCHHHHHH------HHHHHHHcCCCC
Q 003020 707 SNCMIDLYSERSMVRQAEEIFEIMKKK---------GDANEFTYAMMLIMYKRNGRFEEATR------IAKQMRESGLIS 771 (856)
Q Consensus 707 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~------~~~~~~~~~~~p 771 (856)
+..++.+|...|++++|...++++.+. .+.....|..+...+...+....+.. .++......+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT- 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH-
Confidence 778888999999999999999888764 23333455555555554443333322 22221111111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 772 DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 772 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
...++..++.+|...|++++|..+++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3467899999999999999999999998863
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-10 Score=110.63 Aligned_cols=139 Identities=13% Similarity=0.046 Sum_probs=110.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 003020 673 NSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG 752 (856)
Q Consensus 673 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 752 (856)
..++.++...|++++|+..|++.++..+ .+...+..++.++...|++++|+..|+++++..|.++.+|..++.+|...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 3488899999999999999999988542 457788899999999999999999999999999999999999999987766
Q ss_pred C--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003020 753 R--FEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGA 816 (856)
Q Consensus 753 ~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 816 (856)
+ .+.+...++++.. +.|....+...+.++...|++++|+..|+++++ +.|+......+.+
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 4 4456666666542 333334667788889999999999999999988 5888765554444
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.1e-10 Score=112.78 Aligned_cols=172 Identities=13% Similarity=0.126 Sum_probs=104.3
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHH
Q 003020 599 CIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPD---VVVYGVLINAFADVGNVKQAQSYFDAMESAGL--PPNAVIYN 673 (856)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~ 673 (856)
...+..+...+.+.|++++|+..|+++++..+. + ...+..+..++.+.|++++|+..|+++++... +.....+.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344444445555555555555555555543211 2 33444455555555555555555555544311 01123344
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHH-----
Q 003020 674 SLIKLYTK--------VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFT----- 740 (856)
Q Consensus 674 ~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----- 740 (856)
.++.++.. .|++++|+..|+++++ ..|.+...
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-----------------------------------~~p~~~~~~~a~~ 138 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFID-----------------------------------RYPNHELVDDATQ 138 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH-----------------------------------HCTTCTTHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHH-----------------------------------HCcCchhHHHHHH
Confidence 44444444 5555555555555444 44333322
Q ss_pred ------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHH
Q 003020 741 ------------YAMMLIMYKRNGRFEEATRIAKQMRESGLIS--DLLSYNNVLGLYAVD----------GRFKDVIGTF 796 (856)
Q Consensus 741 ------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~ 796 (856)
+..++.+|...|++++|+..|+++++..|.. .+..+..++.+|... |++++|+..|
T Consensus 139 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~ 218 (261)
T 3qky_A 139 KIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY 218 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence 3678899999999999999999999987763 246788899999876 8999999999
Q ss_pred HHHHHcCCCCCH
Q 003020 797 KDMVNAAIQPDD 808 (856)
Q Consensus 797 ~~~~~~g~~p~~ 808 (856)
+++++. .|+.
T Consensus 219 ~~~~~~--~p~~ 228 (261)
T 3qky_A 219 ERLLQI--FPDS 228 (261)
T ss_dssp HHHHHH--CTTC
T ss_pred HHHHHH--CCCC
Confidence 999884 5654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.22 E-value=8.3e-09 Score=113.33 Aligned_cols=344 Identities=10% Similarity=-0.056 Sum_probs=194.9
Q ss_pred CCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHhC-CCC-cChhhHHHHHHHHH----cCCC
Q 003020 172 SSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARK-WSYVQSLWDEMSVK-GIV-PINSTYGTLIDVCS----KGGL 244 (856)
Q Consensus 172 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~-~~~-p~~~~~~~l~~~~~----~~g~ 244 (856)
|+++.+..+|+.+... .|++..|...+....+.+. .+....+|+.++.. |.. ++...|...+..+. .+|+
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 4567788888877763 4688889888888877763 35567788877763 322 26677888887764 2467
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHh-------------cCChhHHHHHHHHHhhhccccCCcchhhhhhhhcc
Q 003020 245 KEEAVCWLERMNEGGMEPDEVTMGIVVQMYKK-------------AGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVEN 311 (856)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (856)
.+.+..+|++++...+..-...|......-.. .+.+..|+.+++..... +.
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~---------------~~- 168 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPL---------------IR- 168 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HH-
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHH---------------Hh-
Confidence 78889999999874221112233222221111 12333444444443210 00
Q ss_pred CCcCCCCcCHhHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 003020 312 GSHVNGSLSSYTYNTLIDTYGKAGQ-------LKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEE 384 (856)
Q Consensus 312 ~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 384 (856)
..+...|...+..-...+. .+.+..+|++++... +.+...|...+..+.+.|+.+.|..++++...
T Consensus 169 ------~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 169 ------GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp ------TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0133466666655433211 344667888887753 33566777777777788888888888888887
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC----------C--CCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 385 LHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANL----------E--PDIVSYRTLLYAYSIRRMVCEAEELISEM 452 (856)
Q Consensus 385 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 452 (856)
. |.+...|... ....+.++. ++.+.+.-. . .....|...+....+.+..+.|..+|+++
T Consensus 242 ~--P~~~~l~~~y----~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 242 M--SDGMFLSLYY----GLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp H--CCSSHHHHHH----HHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C--CCcHHHHHHH----HhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 6 4444433322 221112221 233222100 0 01234445555555666777777777777
Q ss_pred hcCCCCCCHhhHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHH
Q 003020 453 DGGGLEIDEYTQSALTRMYIEAG-MLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLV 531 (856)
Q Consensus 453 ~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 531 (856)
+. ...+...+...+..-...+ +.+.|..+|+......|..++.|...++.....|+.+.|..+|+++. .....
T Consensus 313 -~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~l 386 (493)
T 2uy1_A 313 -GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRM 386 (493)
T ss_dssp -TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHH
T ss_pred -hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHH
Confidence 22 1123334433333333333 57777777777776666666666666666666777777777777662 24666
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 003020 532 FNVMVKAYGMGRNYDKACNLFDSMT 556 (856)
Q Consensus 532 ~~~li~~~~~~g~~~~A~~~~~~m~ 556 (856)
|...+..-...|+.+.+..++++..
T Consensus 387 w~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 387 WDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666666667666666666654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.1e-11 Score=109.75 Aligned_cols=143 Identities=9% Similarity=0.002 Sum_probs=101.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 003020 675 LIKLYTKVGYLKEAQETYKLLRSLEASPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGR 753 (856)
Q Consensus 675 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 753 (856)
|+..+...|++++|+..++..... .|+ ...+..+..+|...|++++|++.|+++++..|.++.+|..++.+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 445556667778888877776542 233 33455677778888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCH-HHHHHHHHHHHHcC
Q 003020 754 FEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGT-FKDMVNAAIQPDD-FTFKSLGAVLMKCG 822 (856)
Q Consensus 754 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~g~~p~~-~~~~~l~~~~~~~G 822 (856)
+++|+..|+++++.+|. ++.+|..++.+|.+.|++++|.+. ++++++. .|+. ..|......+...|
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 88888888888888777 778888888888888888776654 4777773 5554 44666666665555
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=3.4e-10 Score=116.06 Aligned_cols=166 Identities=13% Similarity=0.050 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC-CC----H
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESA----GLPP-NAVIYNSLIKLYTKV-GYLKEAQETYKLLRSLEAS-PD----V 704 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-p~----~ 704 (856)
+|+.+..+|...|++++|+..|++.++. |-.. -..++..++.+|... |++++|+..|++.++.... .+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4444444444444444444444444321 1000 023556666666664 7777777776666552110 11 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----H
Q 003020 705 YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEF-------TYAMMLIMYKRNGRFEEATRIAKQMRESGLISD----L 773 (856)
Q Consensus 705 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~ 773 (856)
.++..++..+...|++++|++.++++.+..|.+.. .|..++.++...|++++|+..++++++..|... .
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 34666677777777777777777777766543321 456667777777777777777777776554311 1
Q ss_pred HHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 003020 774 LSYNNVLGLYA--VDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 774 ~~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 801 (856)
..+..++.++. ..+++++|+..|++++.
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 12344455553 34567777777766543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=118.96 Aligned_cols=158 Identities=18% Similarity=0.187 Sum_probs=120.8
Q ss_pred HHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------CC-CcChhhHHHHHHHHHcCCCHHHHH
Q 003020 177 ALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVK------GI-VPINSTYGTLIDVCSKGGLKEEAV 249 (856)
Q Consensus 177 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~p~~~~~~~l~~~~~~~g~~~~A~ 249 (856)
|++.++.+.... .+....++..+...+...|++++|+..|++++.. +- +....++..++.+|...|++++|+
T Consensus 27 al~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 27 ALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 666666655332 2344678999999999999999999999998864 22 224568999999999999999999
Q ss_pred HHHHHHHhC------CCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHh
Q 003020 250 CWLERMNEG------GMEP-DEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSY 322 (856)
Q Consensus 250 ~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (856)
..|+++++. ...| ...++..+...+...|++++|...|++.... .+....++.+....
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI---------------YATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---------------HHHHSCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHHhcCCCCHHHHH
Confidence 999999875 1123 3568888999999999999999999987532 00111122333467
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003020 323 TYNTLIDTYGKAGQLKEASETFAQMLRE 350 (856)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 350 (856)
++..+...+...|++++|...|++..+.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8899999999999999999999998763
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=6.5e-11 Score=107.55 Aligned_cols=146 Identities=10% Similarity=0.007 Sum_probs=120.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003020 640 LINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSM 719 (856)
Q Consensus 640 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 719 (856)
|...+...|++++|+..++...... +.+...+..+...|...|++++|++.|+++++..+ .+...|..++.+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCc
Confidence 3445556778889999888886642 33345667888999999999999999999988542 457788899999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003020 720 VRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRI-AKQMRESGLISDLLSYNNVLGLYAVDGR 788 (856)
Q Consensus 720 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 788 (856)
+++|+..|+++.+..|.++.+|..++.+|.+.|++++|.+. ++++++..|. ++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999877665 5899999988 88999999888888875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-10 Score=117.69 Aligned_cols=196 Identities=9% Similarity=-0.035 Sum_probs=90.5
Q ss_pred HHHHHcCCChHHHHHHHHHHHHc----CCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 003020 571 IQILAGADLPHMAKRYLRKMQEA----GLVSD-CIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVE-PD----VVVYGVL 640 (856)
Q Consensus 571 l~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l 640 (856)
+..+...|++++|...|.+..+. +.+++ ..+|+.+..+|...|++++|+..|++.++.... .+ ..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44455555666555555554432 11111 234555555555555666665555555532110 01 2345555
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHH
Q 003020 641 INAFADV-GNVKQAQSYFDAMESAGLP-PN----AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDV------YTSN 708 (856)
Q Consensus 641 ~~~~~~~-g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~ 708 (856)
...|... |++++|+..|++..+.... .+ ..++..++..+...|++++|+..|+++.+....... ..|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 5555553 5666666555555442100 00 234555555555556666666665555553221111 1344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHH
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKKGDANEF-----TYAMMLIMYK--RNGRFEEATRIAKQMRE 766 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 766 (856)
.++.++...|++++|...+++..+..|.... .+..++.++. ..+++++|++.|+++..
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 4555555555666666665555554432221 2233333332 23445555555554443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-09 Score=97.09 Aligned_cols=130 Identities=16% Similarity=0.193 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR 750 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 750 (856)
.+..++..+...|++++|..+++++.+... .+...+..++..+...|++++|...++++....|.+...+..++..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 456677777888888888888888776432 3566677778888888888888888888888778888888888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 751 NGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 751 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
.|++++|++.++++.+..+. +...+..++.++...|++++|...++++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888888888888888766 6788888888888888888888888888774
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.1e-10 Score=106.44 Aligned_cols=162 Identities=12% Similarity=0.058 Sum_probs=122.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 003020 637 YGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDL-YS 715 (856)
Q Consensus 637 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~ 715 (856)
+......+...|++++|...|++..+.. |.+...+..++.++...|++++|+..|+++.+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3445566777788888888887776653 4566777777888888888888888887766533 343333222212 12
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 003020 716 ERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-DLLSYNNVLGLYAVDGRFKDVIG 794 (856)
Q Consensus 716 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 794 (856)
..+...+|+..++++.+..|.++..+..++.++...|++++|+..++++++..|.+ +...+..++.++...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 22233457889999999999999999999999999999999999999999998764 46789999999999999999999
Q ss_pred HHHHHHH
Q 003020 795 TFKDMVN 801 (856)
Q Consensus 795 ~~~~~~~ 801 (856)
.|++.+.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-08 Score=103.25 Aligned_cols=229 Identities=9% Similarity=0.012 Sum_probs=172.4
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCH
Q 003020 580 PHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLG--QLEMAEEVYKDMIRFNVEPDVVVYGVLINAF----ADV---GNV 650 (856)
Q Consensus 580 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~ 650 (856)
.++|+...+.++... +-+..+|+.-...+...| ++++++..++.++..+++ +..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 356666676666653 223444666666666677 888888888888876533 666666655555 444 678
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC------HHH
Q 003020 651 KQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLK--EAQETYKLLRSLEASPDVYTSNCMIDLYSERSM------VRQ 722 (856)
Q Consensus 651 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 722 (856)
++++.+++++.+.. +-|..+|+.-.-++.+.|.++ ++++.++++++.++ -+...|+....++...+. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHH
Confidence 88899998888765 668888888888888888888 88888888888653 456677776666666666 899
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 723 AEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEE-ATRIAKQMRESG---LISDLLSYNNVLGLYAVDGRFKDVIGTFKD 798 (856)
Q Consensus 723 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 798 (856)
+++.+++++...|.|..+|+.+...+.+.|+..+ +..+.+++.+.+ +. ++..+..++.+|.+.|+.++|+++++.
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT-SSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999999999999999999999999999988444 556777777655 54 788999999999999999999999999
Q ss_pred HHHcCCCCCHH-HHHHH
Q 003020 799 MVNAAIQPDDF-TFKSL 814 (856)
Q Consensus 799 ~~~~g~~p~~~-~~~~l 814 (856)
+.+. +.|... .|...
T Consensus 284 l~~~-~Dpir~~yW~~~ 299 (306)
T 3dra_A 284 LKSK-YNPIRSNFWDYQ 299 (306)
T ss_dssp HHHT-TCGGGHHHHHHH
T ss_pred HHhc-cChHHHHHHHHH
Confidence 8763 455443 34433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-10 Score=131.79 Aligned_cols=174 Identities=9% Similarity=-0.062 Sum_probs=131.5
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003020 610 MKLGQLEMAEEVYKDMI--------RFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTK 681 (856)
Q Consensus 610 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 681 (856)
...|++++|++.+++++ +.. +.+...+..+..++...|++++|+..|+++.+.+ +.+...|..++.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55677788888887777 432 3356677777788888888888888888887764 5567788888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003020 682 VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIA 761 (856)
Q Consensus 682 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 761 (856)
.|++++|++.|+++.+... .+...+..+..++...|++++ ++.|+++.+..|.+..+|..++.++...|++++|++.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888888877442 245667778888888888888 88888888888888888888888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003020 762 KQMRESGLISDLLSYNNVLGLYAVDGR 788 (856)
Q Consensus 762 ~~~~~~~~~p~~~~~~~l~~~~~~~g~ 788 (856)
+++++.+|. +...+..++.++...|+
T Consensus 558 ~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 888887766 66778888888766555
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.1e-09 Score=108.22 Aligned_cols=211 Identities=10% Similarity=0.023 Sum_probs=156.7
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC---hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHH
Q 003020 562 PDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSD---CIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVE-PD-VVV 636 (856)
Q Consensus 562 p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~ 636 (856)
.+...+..+...+...|++++|+..|+++++.... + ...+..+..+|.+.|++++|+..|+++++..+. |. ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45677888899999999999999999999987522 3 567888999999999999999999999986432 22 457
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003020 637 YGVLINAFAD--------VGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSN 708 (856)
Q Consensus 637 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 708 (856)
+..+..++.. .|++++|+..|+++++.. |.+......+.......+ .+ ...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~-------~~-----------~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRA-------KL-----------ARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHH-------HH-----------HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHH-------HH-----------HHHHH
Confidence 7788888888 999999999999998863 333333322211111000 00 11255
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCC--H
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKKGDA---NEFTYAMMLIMYKRN----------GRFEEATRIAKQMRESGLISD--L 773 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~--~ 773 (856)
.++.+|...|++++|+..|+++.+..|. .+.++..++.+|... |++++|+..++++++..|... .
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 7788889999999999999999887765 456788888888866 889999999999999887622 2
Q ss_pred HHHHHHHHHHHhcCCHHHH
Q 003020 774 LSYNNVLGLYAVDGRFKDV 792 (856)
Q Consensus 774 ~~~~~l~~~~~~~g~~~~A 792 (856)
.+...+..++...|+++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 4455566666666655543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.15 E-value=4.9e-09 Score=104.75 Aligned_cols=177 Identities=11% Similarity=0.007 Sum_probs=85.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 618 AEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGL-PPNAVIYNSLIKLYTKVGYLKEAQETYKLLR 696 (856)
Q Consensus 618 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 696 (856)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555554433 23444444555555555666666666655544431 1233455555555666666666666666555
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 697 SLEASP-----DVYTSNCMIDL--YSERS--MVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 697 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
+. .| +..+...++.+ ....| ++++|..+|+++.+..| +...-..+..++.+.|++++|.+.++.+.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p-~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP-TWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC-SHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 52 23 12333333333 22222 55666666666544432 2111112222555566666666666554443
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 768 ----------GLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 768 ----------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+|. ++.++.+++.+....|+ +|.++++++.+
T Consensus 241 ~p~~~~k~~~~p~-~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 241 YYSVEQKENAVLY-KPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHTTTCHHHHSS-HHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred cccccccccCCCC-CHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 133 45555455544444554 55555655555
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.3e-09 Score=103.11 Aligned_cols=186 Identities=11% Similarity=-0.058 Sum_probs=121.3
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHH
Q 003020 598 DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEP-D-VVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA---VIY 672 (856)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~ 672 (856)
+...+..+...+.+.|++++|+..|+++++..+.. . ...+..++.++.+.|++++|+..|+++.+.. |.+. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 34455666677778888888888888887653321 1 3466777778888888888888888887653 2222 245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH-----------
Q 003020 673 NSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTY----------- 741 (856)
Q Consensus 673 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------- 741 (856)
..++.++...|.. .++ .|..+...+...|++++|+..|+++.+..|.++.++
T Consensus 82 ~~~g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH
Confidence 5555555442210 000 011112222334555566666666655555544333
Q ss_pred ------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 742 ------AMMLIMYKRNGRFEEATRIAKQMRESGLISDL---LSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 742 ------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
..++..|...|++++|+..|+++++..|. ++ ..+..++.+|.+.|++++|++.++++...
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 45678889999999999999999999876 43 57899999999999999999999998875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-08 Score=101.21 Aligned_cols=223 Identities=13% Similarity=0.068 Sum_probs=157.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 003020 531 VFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYM 610 (856)
Q Consensus 531 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 610 (856)
...-+.++|...|+++.. ..-.|....+..+...+ ..+ ++..+++..+.+ .++..++..+..++.
T Consensus 47 ~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~ 111 (310)
T 3mv2_B 47 LLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQA 111 (310)
T ss_dssp HHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 333445666666666531 11233433444333333 222 677777776655 455666678888899
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHH--HHhc
Q 003020 611 KLGQLEMAEEVYKDMIRFNV-EPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPP-----NAVIYNSLIKL--YTKV 682 (856)
Q Consensus 611 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~--~~~~ 682 (856)
..|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+...+..+ ....
T Consensus 112 ~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~ 189 (310)
T 3mv2_B 112 ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFAT 189 (310)
T ss_dssp HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHh
Confidence 99999999999999877654 235668888889999999999999999999875 45 35556666655 3333
Q ss_pred C--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----------CCCCHHHHHHHHHHHHH
Q 003020 683 G--YLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKK----------GDANEFTYAMMLIMYKR 750 (856)
Q Consensus 683 g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~ 750 (856)
| ++.+|..+|+++.+.. |+..+...++.++...|++++|.+.++.+.+. .|.|+.++..++.....
T Consensus 190 g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~ 267 (310)
T 3mv2_B 190 NKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALM 267 (310)
T ss_dssp TCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHH
Confidence 4 8999999999987633 55333334445888999999999999977664 37788888788877777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 751 NGRFEEATRIAKQMRESGLISDLLS 775 (856)
Q Consensus 751 ~g~~~~A~~~~~~~~~~~~~p~~~~ 775 (856)
.|+ +|.++++++.+..|. ++.+
T Consensus 268 lgk--~a~~l~~qL~~~~P~-hp~i 289 (310)
T 3mv2_B 268 QGL--DTEDLTNQLVKLDHE-HAFI 289 (310)
T ss_dssp TTC--TTHHHHHHHHHTTCC-CHHH
T ss_pred hCh--HHHHHHHHHHHhCCC-ChHH
Confidence 887 889999999999877 6544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-09 Score=111.80 Aligned_cols=168 Identities=10% Similarity=0.007 Sum_probs=143.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-H
Q 003020 631 EPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSN-C 709 (856)
Q Consensus 631 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~ 709 (856)
+.+...+..+...+...|++++|...|+++.... |.+...+..++.++...|++++|...++++... .|+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 4455677788888999999999999999998875 667889999999999999999999999988764 35544333 3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 003020 710 MIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-DLLSYNNVLGLYAVDGR 788 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 788 (856)
....+...++.++|++.++++....|.+...+..++.++...|++++|+..++++++..|.. +...+..++.+|...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 33346677888899999999999999999999999999999999999999999999998872 26889999999999999
Q ss_pred HHHHHHHHHHHHH
Q 003020 789 FKDVIGTFKDMVN 801 (856)
Q Consensus 789 ~~~A~~~~~~~~~ 801 (856)
.++|...|++.+.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999998765
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.6e-09 Score=101.68 Aligned_cols=176 Identities=8% Similarity=0.029 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 003020 617 MAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVG----YLKEAQETY 692 (856)
Q Consensus 617 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~ 692 (856)
+|.+.|++..+.| +..++..+...|...+++++|+.+|++..+.| ++..+..+...|.. + ++++|+++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4667777777643 66777777777777888888888888887765 56677777777776 6 788888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 003020 693 KLLRSLEASPDVYTSNCMIDLYSE----RSMVRQAEEIFEIMKKKGDA--NEFTYAMMLIMYKR----NGRFEEATRIAK 762 (856)
Q Consensus 693 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~A~~~~~ 762 (856)
++..+.+ +...+..|...|.. .+++++|++.|+++.+.++. ++.++..|+..|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887643 45566677777766 77888888888888877653 37788888888888 788899999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCC
Q 003020 763 QMRESGLISDLLSYNNVLGLYAVD-G-----RFKDVIGTFKDMVNAAI 804 (856)
Q Consensus 763 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g~ 804 (856)
++.+.+ .++.++..|+.+|... | ++++|+.+|++..+.|.
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888872 2556788888888754 3 78899999998888763
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.10 E-value=4.4e-09 Score=93.08 Aligned_cols=133 Identities=19% Similarity=0.198 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYS 715 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 715 (856)
.|..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|...++++.+... .+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 45667777777888888888888877654 45667777788888888888888888888777442 45667777888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 716 ERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 716 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
..|++++|...++++.+..|.+..++..++.++...|++++|...++++++..|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888888888888888888888899999999999999999988887653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.4e-10 Score=128.27 Aligned_cols=172 Identities=7% Similarity=-0.083 Sum_probs=151.8
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003020 645 ADVGNVKQAQSYFDAME--------SAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE 716 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~--------~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 716 (856)
...|++++|++.+++.. +.. +.+...+..++.++...|++++|++.|+++.+... .+...|..++.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 67899999999999998 543 56678899999999999999999999999998542 467788899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003020 717 RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTF 796 (856)
Q Consensus 717 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 796 (856)
.|++++|++.|+++.+..|.+...|..++.++...|++++ ++.|+++++.+|. +...|..++.+|.+.|++++|+..|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999 9999999999988 8899999999999999999999999
Q ss_pred HHHHHcCCCCCHH-HHHHHHHHHHHcC
Q 003020 797 KDMVNAAIQPDDF-TFKSLGAVLMKCG 822 (856)
Q Consensus 797 ~~~~~~g~~p~~~-~~~~l~~~~~~~G 822 (856)
+++++ +.|+.. .+..+..++...|
T Consensus 558 ~~al~--l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 558 DEVPP--TSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HTSCT--TSTTHHHHHHHHHHHTC---
T ss_pred Hhhcc--cCcccHHHHHHHHHHHHccC
Confidence 99887 478754 4777777775544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-09 Score=98.70 Aligned_cols=106 Identities=11% Similarity=0.010 Sum_probs=95.9
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 701 SPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNV 779 (856)
Q Consensus 701 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 779 (856)
.|+ ...+..++..+.+.|++++|+..|+++....|.++..|..++.+|...|++++|+..|+++++..|. ++..|..+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~l 110 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHT 110 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHH
Confidence 343 4467788889999999999999999999999999999999999999999999999999999999988 88999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 780 LGLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 780 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
+.+|...|++++|+..|+++++. .||..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 99999999999999999999984 57765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.7e-09 Score=93.29 Aligned_cols=108 Identities=9% Similarity=0.052 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003020 705 YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYA 784 (856)
Q Consensus 705 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 784 (856)
..+...+..|.+.|++++|++.|+++++..|.++.+|..++.+|...|++++|+..++++++.+|. ++..|..++.+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 356677778888888888888888888888888888888888888888888888888888888776 7788888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHH
Q 003020 785 VDGRFKDVIGTFKDMVNAAIQPDDFT-FKSLG 815 (856)
Q Consensus 785 ~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~ 815 (856)
..|++++|++.|++.++. .|+... +..|.
T Consensus 93 ~~~~~~~A~~~~~~al~l--~P~~~~a~~~l~ 122 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV--DPSNEEAREGVR 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH--CcCCHHHHHHHH
Confidence 888888888888888873 565443 44443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4e-09 Score=119.60 Aligned_cols=165 Identities=9% Similarity=0.017 Sum_probs=122.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 612 LGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQET 691 (856)
Q Consensus 612 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 691 (856)
.|++++|+..|+++++.. +.+...|..+...+...|++++|...|++..+.. +.+...+..++.+|...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478889999999888764 3367788888889999999999999999998874 56778888899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcC
Q 003020 692 YKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN---GRFEEATRIAKQMRESG 768 (856)
Q Consensus 692 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 768 (856)
|++..+... .+...+..+..++...|++++|.+.++++.+..|.+..++..++.++... |++++|.+.++++++.+
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 998888542 45678888888999999999999999999988888888999999999999 99999999999999988
Q ss_pred CCCCHHHHHHHH
Q 003020 769 LISDLLSYNNVL 780 (856)
Q Consensus 769 ~~p~~~~~~~l~ 780 (856)
+. +...|..++
T Consensus 159 p~-~~~~~~~l~ 169 (568)
T 2vsy_A 159 VG-AVEPFAFLS 169 (568)
T ss_dssp CC-CSCHHHHTT
T ss_pred Cc-ccChHHHhC
Confidence 76 555555554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.3e-08 Score=95.60 Aligned_cols=177 Identities=14% Similarity=0.058 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 003020 582 MAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVG----NVKQAQSYF 657 (856)
Q Consensus 582 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 657 (856)
+|.+.|++..+.| ++..+..+...|...+++++|+..|++..+.+ +...+..+...|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4666777777764 67788888888888999999999999998864 67777888888777 6 899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 003020 658 DAMESAGLPPNAVIYNSLIKLYTK----VGYLKEAQETYKLLRSLEAS-PDVYTSNCMIDLYSE----RSMVRQAEEIFE 728 (856)
Q Consensus 658 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 728 (856)
++..+.| +...+..+...|.. .+++++|+++|++..+.+.. .....+..|...|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9998765 67788888888877 78999999999998875521 026677788888888 889999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHcCC
Q 003020 729 IMKKKGDANEFTYAMMLIMYKRN-G-----RFEEATRIAKQMRESGL 769 (856)
Q Consensus 729 ~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 769 (856)
+..+. +.++.++..|+.+|... | ++++|+..|+++.+.|.
T Consensus 154 ~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99887 55667888899988764 3 89999999999999874
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.04 E-value=3.4e-07 Score=100.43 Aligned_cols=378 Identities=9% Similarity=-0.046 Sum_probs=212.6
Q ss_pred cCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-HHHH
Q 003020 368 NND-QLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRM-VCEA 445 (856)
Q Consensus 368 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~A 445 (856)
+.| +++.|+.+|+.+.+. -|. |+++.+..+|++.+.. .|++..|...+.-..+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 377888888887754 232 8888888888888874 3688888877776666553 3456
Q ss_pred HHHHHHHhcC-CCCC-CHhhHHHHHHHHH----HcCChHHHHHHHHHHHhcCCCCch-hhHHHHHHHhhcCCHHHHHHHH
Q 003020 446 EELISEMDGG-GLEI-DEYTQSALTRMYI----EAGMLEKSWLWFRRFHLAGDMSSE-GYSANIDGYGERGHVLEAERAF 518 (856)
Q Consensus 446 ~~~~~~~~~~-~~~p-~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~ 518 (856)
..+|+..+.. |..| +...+...+..+. ..++.+.+..+|+++........+ .|......-. ......+..+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~-~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL-ELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH-HHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH-HhccccHHHHH
Confidence 6677766543 3322 4455555554432 234566677777777653221111 1111111111 11111122111
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC--CC-----hHHHHHHHHHHH
Q 003020 519 ICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGA--DL-----PHMAKRYLRKMQ 591 (856)
Q Consensus 519 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~-----~~~A~~~~~~~~ 591 (856)
... .+.+..|..+++.+...-...+...|...+.--... +- .+.+..+|++++
T Consensus 147 ~~~--------------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al 206 (493)
T 2uy1_A 147 GDT--------------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYIL 206 (493)
T ss_dssp HHH--------------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHH--------------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHH
Confidence 111 112333444444433210001233444444432221 11 234566777777
Q ss_pred HcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------
Q 003020 592 EAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESA-------- 663 (856)
Q Consensus 592 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------- 663 (856)
... +.+...|...+..+.+.|+.++|..+|++++.. +.+...|.. |......++. ++.+.+.
T Consensus 207 ~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~ 276 (493)
T 2uy1_A 207 DSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAES 276 (493)
T ss_dssp HHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC------
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccch
Confidence 653 445677777777778888888888888888876 334333332 2221111121 2222211
Q ss_pred -CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCH
Q 003020 664 -GL---PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE-RSMVRQAEEIFEIMKKKGDANE 738 (856)
Q Consensus 664 -~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~ 738 (856)
+. ......|...+....+.+..+.|..+|+++ +.. ..+...|...+..-.. .++.+.|..+|+...+..|.++
T Consensus 277 ~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~ 354 (493)
T 2uy1_A 277 AEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST 354 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH
T ss_pred hhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH
Confidence 00 011245666667766778889999999888 322 2344444332222222 3468899999998888777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 739 FTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
..|...+......|+.+.|..+|+++. . ....|...+..-...|+.+.+..+++++.+
T Consensus 355 ~~~~~yid~e~~~~~~~~aR~l~er~~----k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 355 LLKEEFFLFLLRIGDEENARALFKRLE----K-TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSC----C-BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----H-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777788899999999888872 2 567788888777788998888888888775
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-07 Score=95.80 Aligned_cols=229 Identities=8% Similarity=0.001 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHcCCCCChHhHHHHHHHH----Hhc---CCH
Q 003020 546 DKACNLFDSMTSHGAVP-DKCSYNSLIQILAGAD--LPHMAKRYLRKMQEAGLVSDCIPYCAVISSY----MKL---GQL 615 (856)
Q Consensus 546 ~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~ 615 (856)
++|+.+++.++.. .| +...|+.-..++...+ .+++++..++.++... +-+..+|+.-...+ ... +++
T Consensus 50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3444444444443 12 2233444444444444 4555555555544432 12233333333333 333 677
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHH
Q 003020 616 EMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVK--QAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGY------LKE 687 (856)
Q Consensus 616 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 687 (856)
++++..++++++.. +.+..+|+.-.-.+.+.|.++ ++++.++++++.+ +-|...|+....++...|. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 88888888888765 347888888777777888877 8888888888775 5677888887777777776 888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003020 688 AQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQ-AEEIFEIMKKKG---DANEFTYAMMLIMYKRNGRFEEATRIAKQ 763 (856)
Q Consensus 688 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 763 (856)
+++.++.++...+ -|...|+.+...+.+.|+..+ +.++.+++.+.+ +.++.++..++.+|.+.|+.++|+++++.
T Consensus 205 El~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 8888888887543 567778888888887777444 556777766554 77888999999999999999999999999
Q ss_pred HHH-cCCCCCHHHHHHHHH
Q 003020 764 MRE-SGLISDLLSYNNVLG 781 (856)
Q Consensus 764 ~~~-~~~~p~~~~~~~l~~ 781 (856)
+.+ .+|. ....|+..+.
T Consensus 284 l~~~~Dpi-r~~yW~~~~~ 301 (306)
T 3dra_A 284 LKSKYNPI-RSNFWDYQIS 301 (306)
T ss_dssp HHHTTCGG-GHHHHHHHHH
T ss_pred HHhccChH-HHHHHHHHHh
Confidence 887 5665 5566665543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.01 E-value=8.6e-09 Score=90.07 Aligned_cols=111 Identities=9% Similarity=-0.058 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYK 749 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 749 (856)
..+...+..|.+.|++++|++.|+++++..+ .+...|..++.+|...|++++|++.++++++..|.++.+|..++.++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 5677888999999999999999999888542 467788889999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003020 750 RNGRFEEATRIAKQMRESGLISDLLSYNNVLGL 782 (856)
Q Consensus 750 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 782 (856)
..|++++|++.|+++++..|. +...+..+..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPS-NEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcC-CHHHHHHHHHh
Confidence 999999999999999999988 88888777664
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.01 E-value=3e-08 Score=97.01 Aligned_cols=189 Identities=15% Similarity=0.043 Sum_probs=132.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 003020 563 DKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSD--CIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDV--VVYG 638 (856)
Q Consensus 563 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 638 (856)
+...+..+...+...|++++|+..|+++++...... ...+..+..+|.+.|++++|+..|+++++..+.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 455667778889999999999999999998653221 356888899999999999999999999986543221 2455
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003020 639 VLINAFAD------------------VGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEA 700 (856)
Q Consensus 639 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 700 (856)
.+..++.. .|++++|+..|+++++.. |-+...+....... .+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHHH----
Confidence 55555554 345555666665555542 22222221111000 0000000
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 701 SPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANE---FTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 701 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.....++..|...|++++|+..|+++.+..|.++ .++..++.+|.+.|++++|++.++++...+|.
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 0113566788899999999999999999888776 57889999999999999999999999988765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=9.4e-09 Score=116.51 Aligned_cols=165 Identities=11% Similarity=0.060 Sum_probs=108.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 577 ADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSY 656 (856)
Q Consensus 577 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 656 (856)
.|++++|...++++++.. +.+...+..+...|...|++++|...|++.++.. +.+...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467777888887777653 3356677777788888888888888888887764 33567777788888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhC
Q 003020 657 FDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSER---SMVRQAEEIFEIMKKK 733 (856)
Q Consensus 657 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 733 (856)
+++..+.. +.+...+..++.++...|++++|++.|+++.+... .+...+..+..++... |++++|.+.++++.+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 88877764 55667777888888888888888888887777432 3456677777777777 8888888888888877
Q ss_pred CCCCHHHHHHHH
Q 003020 734 GDANEFTYAMML 745 (856)
Q Consensus 734 ~~~~~~~~~~l~ 745 (856)
+|.+...+..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 776665555444
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-08 Score=96.94 Aligned_cols=125 Identities=13% Similarity=0.071 Sum_probs=81.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 003020 672 YNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN 751 (856)
Q Consensus 672 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 751 (856)
+..++..+...|++++|+..|+++. .|+...+..++.++...|++++|++.++++.+..|.+..++..++.+|...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 3445555666666666666666542 345566666666666666777777766666666666666666677777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 752 GRFEEATRIAKQMRESGLISDL----------------LSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 752 g~~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
|++++|++.++++++..+. +. ..+..++.+|...|++++|...|+++++
T Consensus 85 ~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777777777776665544 22 5666677777777777777777777666
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.9e-09 Score=109.02 Aligned_cols=158 Identities=13% Similarity=0.103 Sum_probs=76.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHH
Q 003020 607 SSYMKLGQLEMAEEVYKDMIRFNV----EP-DVVVYGVLINAFADVGNVKQAQSYFDAMESA----GLPP-NAVIYNSLI 676 (856)
Q Consensus 607 ~~~~~~g~~~~A~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~ 676 (856)
..|...|++++|...|.++.+... .+ -..+|+.+...|...|++++|+..|++.++. |-+. ...++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556666666666666553210 00 1235555555566666666666666555432 1000 123455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--C----HHHHHHHH
Q 003020 677 KLYTKVGYLKEAQETYKLLRSLEASP-D----VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA--N----EFTYAMML 745 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~----~~~~~~l~ 745 (856)
.+|.. |++++|+..|++..+..... + ..++..+..+|...|++++|++.++++.+..+. + ...+..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 55555 55555555555554411000 0 234445555555555555555555555443211 1 12344444
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 003020 746 IMYKRNGRFEEATRIAKQMR 765 (856)
Q Consensus 746 ~~~~~~g~~~~A~~~~~~~~ 765 (856)
.++...|++++|+..+++++
T Consensus 203 ~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 45555555555555555555
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.95 E-value=6.9e-09 Score=107.12 Aligned_cols=157 Identities=10% Similarity=0.045 Sum_probs=69.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CCC--HHHHHHHHH
Q 003020 643 AFADVGNVKQAQSYFDAMESA----GLPP-NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLE--A-SPD--VYTSNCMID 712 (856)
Q Consensus 643 ~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p~--~~~~~~l~~ 712 (856)
.|...|++++|...|.+..+. +-++ -..+|+.++.+|...|++++|+..|++.++.. . .+. ..++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555444321 1000 02344455555555555555555555443310 0 011 224444445
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHH
Q 003020 713 LYSERSMVRQAEEIFEIMKKKGDAN------EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-D----LLSYNNVLG 781 (856)
Q Consensus 713 ~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~ 781 (856)
+|.. |++++|++.++++....+.. ..++..++.+|...|++++|+..++++++..+.. + ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 5544 55555555555544432111 2344455555555555555555555555432110 0 123444444
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 003020 782 LYAVDGRFKDVIGTFKDMV 800 (856)
Q Consensus 782 ~~~~~g~~~~A~~~~~~~~ 800 (856)
++...|++++|+..|++.+
T Consensus 204 ~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 5555555555555555544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-08 Score=103.11 Aligned_cols=167 Identities=6% Similarity=-0.084 Sum_probs=134.8
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHH
Q 003020 596 VSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVI-YNS 674 (856)
Q Consensus 596 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~ 674 (856)
+.+...+..+...+...|++++|...|+++++.. +.+...+..+...+...|++++|...++++.... |+... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3445567777888888999999999999998865 3367788889999999999999999999887653 44433 333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHcC
Q 003020 675 LIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN--EFTYAMMLIMYKRNG 752 (856)
Q Consensus 675 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 752 (856)
....+...++.++|+..|++..+..+ .+...+..+..++...|++++|++.++++.+..|.+ ..++..++.++...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 33346677888889999988887542 457778889999999999999999999999988776 788999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 003020 753 RFEEATRIAKQMRE 766 (856)
Q Consensus 753 ~~~~A~~~~~~~~~ 766 (856)
+.++|...|++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999988764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-08 Score=97.53 Aligned_cols=57 Identities=7% Similarity=-0.039 Sum_probs=26.7
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 003020 501 NIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTS 557 (856)
Q Consensus 501 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 557 (856)
++..|...|++++|+..|+++.+..|.++.+|..++.++...|++++|+..|++.++
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.4e-09 Score=95.80 Aligned_cols=109 Identities=7% Similarity=-0.040 Sum_probs=91.4
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003020 691 TYKLLRSLEASP-DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 691 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 769 (856)
.|+++.+ ..| +...+..++..+...|++++|+..|+++....|.++..|..++.+|...|++++|+..|+++++..|
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3444444 234 3446677788888999999999999999988899999999999999999999999999999999888
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 770 ISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 770 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
. ++..+..++.+|...|++++|+..|++.++.
T Consensus 87 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 X-EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp T-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7 8888999999999999999999999998873
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-07 Score=95.57 Aligned_cols=166 Identities=11% Similarity=-0.025 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--
Q 003020 635 VVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNA------VIYNSLIKLYTKVGYLKEAQETYKLLRSLEA---SPD-- 703 (856)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-- 703 (856)
..+...+..+...|++++|.+.+++..+.. +... ..+..++..+...|++++|+..|++..+... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 344556677788888999988888887653 2222 2244566677888899999999998876321 122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIMKK---KGDANE----FTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS----- 771 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----- 771 (856)
..+++.++..|...|++++|+..++++.+ ..+.+. .++..++.+|...|++++|+..++++++.....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 44788899999999999999999998873 334432 588999999999999999999999998753211
Q ss_pred CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 003020 772 DLLSYNNVLGLYAVDGRFKDV-IGTFKDMVN 801 (856)
Q Consensus 772 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 801 (856)
-..+|..++.+|...|++++| ...+++++.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 157899999999999999999 787888776
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-07 Score=96.92 Aligned_cols=162 Identities=12% Similarity=0.009 Sum_probs=124.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHH
Q 003020 640 LINAFADVGNVKQAQSYFDAMESAGL-PPNA----VIYNSLIKLYTKVGYLKEAQETYKLLRSLEA-SPD----VYTSNC 709 (856)
Q Consensus 640 l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~ 709 (856)
.+..+...|++++|..++++..+... .|+. ..+..++..+...|++++|+..|+++.+... .++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45667888999999999998876421 1221 1334567777788899999999999887322 223 336888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CC-HHHHH
Q 003020 710 MIDLYSERSMVRQAEEIFEIMKKKG-------DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI----SD-LLSYN 777 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~-~~~~~ 777 (856)
++.+|...|++++|+..++++.+.. +....++..++.+|...|++++|+..++++++..+. +. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999888421 223347889999999999999999999999875322 12 57899
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHH
Q 003020 778 NVLGLYAVDGR-FKDVIGTFKDMVN 801 (856)
Q Consensus 778 ~l~~~~~~~g~-~~~A~~~~~~~~~ 801 (856)
.++.+|...|+ +++|+..+++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999999876
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.2e-08 Score=90.56 Aligned_cols=130 Identities=12% Similarity=-0.068 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYK 749 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 749 (856)
..+..++..+...|++++|...|++..+... .+...+..++.++...|++++|.+.++++.+..|.++.++..++.++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4567777888888999999999988877432 357778888888999999999999999999888889999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHH
Q 003020 750 RNGRFEEATRIAKQMRESGLISDLLSYNNVLG--LYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 750 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~ 801 (856)
..|++++|++.++++++..|. +...+..+.. .+...|++++|+..+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999998877 6666644444 47888999999999887654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=7e-07 Score=91.16 Aligned_cols=226 Identities=11% Similarity=0.029 Sum_probs=162.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-CHHHHHH
Q 003020 579 LPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLG-QLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADV-G-NVKQAQS 655 (856)
Q Consensus 579 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~ 655 (856)
..++|+++++.++... +-+..+|+.-...+...| .+++++..++.++..++ .+..+|+.-...+.+. + +++++++
T Consensus 69 ~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3456666666666653 224445666666666667 48888888888887763 3777888777777666 6 7888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-------H
Q 003020 656 YFDAMESAGLPPNAVIYNSLIKLYTKVGYLK--------EAQETYKLLRSLEASPDVYTSNCMIDLYSERSM-------V 720 (856)
Q Consensus 656 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~ 720 (856)
+++++.+.. +-|..+|+...-++.+.|.++ ++++.++++++..+ -+...|+....++...+. +
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHH
Confidence 888888765 667788887777777666666 88888888888553 466778777777777765 7
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHcC-----CCCCHHH
Q 003020 721 RQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRF--------------------EEATRIAKQMRESG-----LISDLLS 775 (856)
Q Consensus 721 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~p~~~~ 775 (856)
+++++.+++++...|.|..+|+.+...+.+.|+. ........++.... ..+++..
T Consensus 225 ~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 225 QDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 8999999999999999999999998888887764 23333333333222 0247788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 776 YNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 776 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
+..++.+|...|+.++|.++++.+.+. ..|-..
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~ 337 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRA 337 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHH
Confidence 999999999999999999999998753 455443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-08 Score=94.98 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=42.3
Q ss_pred chhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 003020 495 SEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSH 558 (856)
Q Consensus 495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 558 (856)
.+.+...+..+...|++++|+..|+++....|.+...+..+..++...|++++|+..|++....
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 69 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc
Confidence 3445555666666666666766666666666666777777777777777777777777766543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.6e-08 Score=87.15 Aligned_cols=108 Identities=10% Similarity=0.085 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------HHHHHH
Q 003020 705 YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISD------LLSYNN 778 (856)
Q Consensus 705 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~ 778 (856)
..+..++..+.+.|++++|++.|+++++..|.++.+|..++.+|...|++++|++.++++++..|... ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999998765421 247888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 779 VLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSL 814 (856)
Q Consensus 779 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 814 (856)
++.++...|++++|++.|++.++. .||+.+...|
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 999999999999999999999884 6777665554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.6e-08 Score=94.70 Aligned_cols=121 Identities=5% Similarity=0.018 Sum_probs=90.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHHcCCH--HH
Q 003020 680 TKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIM-YKRNGRF--EE 756 (856)
Q Consensus 680 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 756 (856)
...|++++|+..++...+... .+...+..++.+|...|++++|+..++++.+..|.++..+..++.+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345777777777777766432 4566777777888888888888888888887777788888888888 7778887 88
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 757 ATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 757 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
|+..++++++..|. ++..+..++.+|...|++++|+..|+++++.
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888888776 7778888888888888888888888888774
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.86 E-value=4.9e-08 Score=101.91 Aligned_cols=131 Identities=14% Similarity=-0.055 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD--------------VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD 735 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 735 (856)
..+..++..+.+.|++++|+..|+++++...... ...|..+..+|...|++++|+..++++++..|
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444555555555555555555555554321111 46788899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 003020 736 ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDV-IGTFKDMVN 801 (856)
Q Consensus 736 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 801 (856)
.+..+|..++.+|...|++++|+..|+++++..|. +..++..++.++...|++++| ..+|++|..
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887 888999999999999999998 557777765
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.8e-08 Score=85.41 Aligned_cols=98 Identities=12% Similarity=0.019 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 783 (856)
...+..++..+...|++++|+..|+++.+..|.++.+|..++.++...|++++|+..++++++.+|. ++..|..++.+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 3456677788888899999999999988888888889999999999999999999999999998887 788889999999
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 003020 784 AVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 784 ~~~g~~~~A~~~~~~~~~~ 802 (856)
...|++++|+..|+++++.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 9999999999999988874
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-07 Score=82.15 Aligned_cols=113 Identities=15% Similarity=0.194 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003020 705 YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYA 784 (856)
Q Consensus 705 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 784 (856)
..+..++..+...|++++|.+.++++.+..|.+..++..++.++...|++++|+..++++.+..+. ++.++..++.+|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHH
Confidence 345555555666666666666666666555555666666666666666666666666666665554 5556666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH
Q 003020 785 VDGRFKDVIGTFKDMVNAAIQPD-DFTFKSLGAVLMK 820 (856)
Q Consensus 785 ~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~ 820 (856)
..|++++|...++++++. .|+ ...+..+...+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHh
Confidence 666666666666666553 232 3334444444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=5.2e-08 Score=85.51 Aligned_cols=119 Identities=15% Similarity=-0.078 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY 748 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 748 (856)
...+..++..+...|++++|+..|+++.+... .+...+..++.++...|++++|.+.++++.+..|.++.++..++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34455555556666666666666665555321 23445555566666666666666666666665566666666666666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003020 749 KRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRF 789 (856)
Q Consensus 749 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 789 (856)
...|++++|++.++++++..|. +...+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 6666666666666666666554 555666666666655553
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-07 Score=81.73 Aligned_cols=117 Identities=18% Similarity=0.150 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY 748 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 748 (856)
...+..++..+...|++++|.+.|+++.+... .+...+..++..+...|++++|...++++.+..|.+..++..++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 46677788888888888888888888877432 45667778888888888999999999888888888888888899999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003020 749 KRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDG 787 (856)
Q Consensus 749 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 787 (856)
...|++++|...++++++..|. ++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcc
Confidence 9999999999999999888876 7788888887776654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.83 E-value=4.2e-07 Score=93.00 Aligned_cols=164 Identities=10% Similarity=-0.019 Sum_probs=126.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHH
Q 003020 604 AVISSYMKLGQLEMAEEVYKDMIRFNV-EPDV----VVYGVLINAFADVGNVKQAQSYFDAMESAGLP-PN----AVIYN 673 (856)
Q Consensus 604 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~ 673 (856)
..+..+...|++++|...+++..+... .|+. ..+..+...+...|++++|+..|+++.+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999987432 1221 13334666677788999999999999874222 22 34789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCHHHH
Q 003020 674 SLIKLYTKVGYLKEAQETYKLLRS----L-EASPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKKG------DANEFTY 741 (856)
Q Consensus 674 ~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~ 741 (856)
.++.+|...|++++|+..|+++.+ . +..+. ..++..++.+|...|++++|++.++++.+.. ..-..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999998874 1 11122 3378889999999999999999999887654 1226789
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHc
Q 003020 742 AMMLIMYKRNGR-FEEATRIAKQMRES 767 (856)
Q Consensus 742 ~~l~~~~~~~g~-~~~A~~~~~~~~~~ 767 (856)
..++.+|...|+ +++|++.++++++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999995 69999999998763
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.7e-08 Score=85.19 Aligned_cols=116 Identities=8% Similarity=-0.081 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYK 749 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 749 (856)
..+..++..+...|++++|+..|+++.+... .+...+..++.++...|++++|+..++++.+..|.+..++..++.++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 4444444445555555555555554444221 233444444444555555555555555555444445555555555555
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003020 750 RNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDG 787 (856)
Q Consensus 750 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 787 (856)
..|++++|++.++++++..|. +...+..++.++...|
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 555555555555555554443 3344444444444433
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-07 Score=90.38 Aligned_cols=129 Identities=15% Similarity=0.031 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003020 637 YGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE 716 (856)
Q Consensus 637 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 716 (856)
+..+...+...|++++|+..|++.. .|+...+..++.++...|++++|+..|+++.+.. +.+...+..++.++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4445566667777777777777653 4566777777777777777777777777777643 2345667777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 717 RSMVRQAEEIFEIMKKKGDANE----------------FTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 717 ~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.|++++|++.++++.+..|.+. .++..++.+|...|++++|++.++++++..|.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 8888888888887777665554 78888888888899999999999988888765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.80 E-value=4e-08 Score=88.07 Aligned_cols=98 Identities=8% Similarity=-0.090 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 783 (856)
...+..+...+...|++++|+..|+++....|.++..|..++.+|...|++++|+..|+++++.+|. ++..+..++.+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 3455667778888899999999999998888889999999999999999999999999999998887 788888899999
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 003020 784 AVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 784 ~~~g~~~~A~~~~~~~~~~ 802 (856)
...|++++|+..|+++++.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988873
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=9.2e-08 Score=84.30 Aligned_cols=118 Identities=8% Similarity=0.009 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003020 702 PDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLG 781 (856)
Q Consensus 702 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 781 (856)
.+...+..++..+...|++++|.+.++++.+..|.+..++..++.++...|++++|++.++++++..+. ++..+..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 346678889999999999999999999999999999999999999999999999999999999999887 8899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcC
Q 003020 782 LYAVDGRFKDVIGTFKDMVNAAIQPDD-FTFKSLGAVLMKCG 822 (856)
Q Consensus 782 ~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~G 822 (856)
+|...|++++|+..++++++. .|+. ..+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 999999999999999999885 4543 45666666665544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=2e-07 Score=81.67 Aligned_cols=117 Identities=9% Similarity=0.047 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003020 703 DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGL 782 (856)
Q Consensus 703 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 782 (856)
+...+..++..+...|++++|...++++....|.+..++..++.++...|++++|++.++++++..|. ++..+..++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 34567788889999999999999999999998999999999999999999999999999999999877 78999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcC
Q 003020 783 YAVDGRFKDVIGTFKDMVNAAIQP-DDFTFKSLGAVLMKCG 822 (856)
Q Consensus 783 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~G 822 (856)
|...|++++|...++++++. .| +...+..+..++.+.|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHh
Confidence 99999999999999999985 44 4556777777777665
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=5.5e-06 Score=84.24 Aligned_cols=195 Identities=8% Similarity=0.002 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 003020 615 LEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVG--NVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGY-LKEAQET 691 (856)
Q Consensus 615 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~ 691 (856)
+++++..++.++..+ +.+..+|+.-...+...| .+++++.+++++.+.. +-|..+|+.-.-++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 567788888887765 347778887777777777 3788888888888765 6677888887777777787 5888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc------
Q 003020 692 YKLLRSLEASPDVYTSNCMIDLYSER--------------SMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN------ 751 (856)
Q Consensus 692 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 751 (856)
++.+++..+ -+...|+....++... +.++++++.+.+++...|.|..+|+.+-..+...
T Consensus 168 ~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 168 TDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 888887553 4566666666655544 4588999999999998999999998777777665
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHH
Q 003020 752 -----GRFEEATRIAKQMRESGLISDLLSYNNVLGL---YAVDGRFKDVIGTFKDMVNAAIQPDDFT-FKSLG 815 (856)
Q Consensus 752 -----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~ 815 (856)
+.++++++.++++++..|. +.-++..++.. ....|..+++...+.++++ +.|...- |.-+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLR 316 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHHH
Confidence 4588999999999998876 54443333322 2246778889999999887 4676543 44443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.1e-08 Score=90.51 Aligned_cols=113 Identities=11% Similarity=-0.092 Sum_probs=95.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003020 656 YFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD 735 (856)
Q Consensus 656 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 735 (856)
.|+++.... +.+...+..++..+...|++++|+..|+.+..... .+...|..+..+|...|++++|+..|+++....|
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 455555443 34556778888899999999999999999888542 4677888899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 736 ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 736 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.++.++..++.+|...|++++|++.|+++++..|.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999998765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-06 Score=88.06 Aligned_cols=193 Identities=7% Similarity=0.069 Sum_probs=157.6
Q ss_pred HhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003020 610 MKLGQLE-MAEEVYKDMIRFNVEPDVVVYGVLINAFADVGN----------VKQAQSYFDAMESAGLPPNAVIYNSLIKL 678 (856)
Q Consensus 610 ~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 678 (856)
.+.|.++ +|+..++.++..++ -+..+|+.--..+...+. +++++.+++.+.... |-+..+|+.-..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455544 78999999888653 366677765555544443 678999999998875 6788999999888
Q ss_pred HHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc----
Q 003020 679 YTKVG--YLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSM-VRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN---- 751 (856)
Q Consensus 679 ~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 751 (856)
+...| .+++++.+++++.+... -+...|+.-..++...|. ++++++.++++++..|.|..+|+....++...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 88888 48999999999998653 567788888888888888 69999999999999999999999999888776
Q ss_pred ----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCH
Q 003020 752 ----------GRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVD-----------GRFKDVIGTFKDMVNAAIQPDD 808 (856)
Q Consensus 752 ----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~g~~p~~ 808 (856)
+.++++++.+++++...|. |..+|+.+-..+... +.++++++.++++++. .||.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~ 271 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN 271 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc
Confidence 4589999999999999998 999998777777666 4688999999999984 7776
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=6.4e-08 Score=83.77 Aligned_cols=98 Identities=11% Similarity=-0.001 Sum_probs=86.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003020 707 SNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVD 786 (856)
Q Consensus 707 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 786 (856)
+..++..+.+.|++++|+..++++.+..|.+...|..++.++...|++++|+..++++++..|. ++..+..++.+|...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 4566778889999999999999999999999999999999999999999999999999999988 889999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC
Q 003020 787 GRFKDVIGTFKDMVNAAIQPD 807 (856)
Q Consensus 787 g~~~~A~~~~~~~~~~g~~p~ 807 (856)
|++++|+..++++++. .|+
T Consensus 99 g~~~~A~~~~~~al~~--~P~ 117 (121)
T 1hxi_A 99 HNANAALASLRAWLLS--QPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHh--CcC
Confidence 9999999999998873 554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.75 E-value=6.3e-08 Score=87.20 Aligned_cols=102 Identities=12% Similarity=0.008 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003020 668 NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIM 747 (856)
Q Consensus 668 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 747 (856)
+...+..++..+.+.|++++|+..|+++.+..+ .+...|..++.+|...|++++|++.|+++.+..|.++.+|..++.+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 456788888899999999999999999988542 4677888999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC
Q 003020 748 YKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
|...|++++|+..|+++++..+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999998754
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.7e-07 Score=81.79 Aligned_cols=113 Identities=10% Similarity=-0.126 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY 748 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 748 (856)
...+..++..+...|++++|+..|++.++... .+...|..++.++...|++++|+..++++.+..|.++.+|..++.++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45677888888999999999999998888542 45778888999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHH
Q 003020 749 KRNGRFEEATRIAKQMRESG------LISDLLSYNNVLGLY 783 (856)
Q Consensus 749 ~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~ 783 (856)
...|++++|+..++++++.. |. +...+..+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~-~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSS-AREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchh-HHHHHHHHHHHH
Confidence 99999999999999999887 54 555666555544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.3e-07 Score=85.49 Aligned_cols=97 Identities=10% Similarity=0.006 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 783 (856)
...+..+...+...|++++|++.|+++++..|.+...|..++.+|...|++++|+..++++++..|. ++..|..++.+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3455566666667777777777777777666667777777777777777777777777777777665 666777777777
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 003020 784 AVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 784 ~~~g~~~~A~~~~~~~~~ 801 (856)
...|++++|+..|+++++
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 777777777777777666
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.73 E-value=4.4e-08 Score=99.45 Aligned_cols=195 Identities=11% Similarity=-0.054 Sum_probs=134.6
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003020 598 DCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIK 677 (856)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 677 (856)
+...+..+...+...|++++|+..|+++++.. +.+...|..+..++.+.|++++|...+++..+.. +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567777888888899999999999888764 3377888888888999999999999999988764 567788888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 678 LYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEA 757 (856)
Q Consensus 678 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 757 (856)
++...|++++|+..|+++.+..... ...+...+....+ ..++...........+.+......+...+ .|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQ-RLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT-TCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccc-hhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHH
Confidence 9999999999999998877632110 0001111111111 12222222222233466666655554443 6889999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 003020 758 TRIAKQMRESGLISDLLSYNNVLGLYAVD-GRFKDVIGTFKDMVN 801 (856)
Q Consensus 758 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 801 (856)
++.++++++..|. +......+...+.+. +++++|.++|.++.+
T Consensus 155 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999998887765 555666666666665 778899999988765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.6e-07 Score=78.27 Aligned_cols=98 Identities=12% Similarity=0.060 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 783 (856)
...+..++..+...|++++|...++++....|.++..+..++.++...|++++|+..++++++..|. ++..+..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 3455566667777777777777777777777777777777777777777777777777777777665 677777777777
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 003020 784 AVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 784 ~~~g~~~~A~~~~~~~~~~ 802 (856)
...|++++|...+++.++.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 7777777777777777763
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.73 E-value=4e-07 Score=89.78 Aligned_cols=199 Identities=9% Similarity=-0.027 Sum_probs=144.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHH------------CCCC-----
Q 003020 611 KLGQLEMAEEVYKDMIRFNVEPDVVVYGVL-------INAFADVGNVKQAQSYFDAMES------------AGLP----- 666 (856)
Q Consensus 611 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~------------~~~~----- 666 (856)
..++...|.+.|.++.+..+ -....|..+ ..++...++..+++..+..... .|+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 57889999999999988653 366788877 4566666666666666665544 1110
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--HHHH
Q 003020 667 ---PNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN--EFTY 741 (856)
Q Consensus 667 ---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~ 741 (856)
.-....-.+..++...|++++|.+.|+.+...+ |+......+...+.+.+++++|+..|+......++. ..++
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~ 174 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAG 174 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHH
Confidence 002334456677889999999999998876533 544355566678889999999999998665543221 3478
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 742 AMMLIMYKRNGRFEEATRIAKQMRESGLISD--LLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSL 814 (856)
Q Consensus 742 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 814 (856)
..++.++...|++++|+..|+++......|. +......+.++.+.|+.++|...|++++.. .|+...+..|
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 8899999999999999999999985432143 357888999999999999999999999984 6773334443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-07 Score=88.67 Aligned_cols=131 Identities=14% Similarity=-0.038 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSLEAS-P--------------DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD 735 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 735 (856)
.+..++..+...|++++|+..|++..+.... | ....+..+..+|...|++++|+..++++.+..|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3444555555555555555555555542211 1 025677788888889999999999999888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHc
Q 003020 736 ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVI-GTFKDMVNA 802 (856)
Q Consensus 736 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 802 (856)
.+..++..++.+|...|++++|++.|+++++..|. +...+..++.++...|+.+++. ..+..+...
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC------------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88889999999999999999999999999988877 7888888888888888887776 556666553
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.70 E-value=4.9e-07 Score=83.19 Aligned_cols=130 Identities=13% Similarity=0.054 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003020 635 VVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLY 714 (856)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 714 (856)
..+..+...+...|++++|...|++..+.. +.+..++..++.++...|++++|+..|++..+... .+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 456667777778888888888888887754 55677888888888888888888888888877532 4566777888888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHH
Q 003020 715 SERSMVRQAEEIFEIMKKKGDANEFTYAMMLIM--YKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 715 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 766 (856)
...|++++|.+.++++.+..|.+...+..+..+ +...|++++|++.+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888999999999988888888887777444444 7788889999888887654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.70 E-value=3.2e-07 Score=81.41 Aligned_cols=99 Identities=8% Similarity=-0.036 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003020 702 PDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLG 781 (856)
Q Consensus 702 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 781 (856)
.+...+..++..+...|++++|+..|+++....|.++.+|..++.++...|++++|+..++++++..|. ++..|..++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 456677788888888888888888888888888888888888888888888888888888888888877 7888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 003020 782 LYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 782 ~~~~~g~~~~A~~~~~~~~~ 801 (856)
+|...|++++|+..|+++++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 88888888888888888877
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-07 Score=90.01 Aligned_cols=155 Identities=8% Similarity=-0.014 Sum_probs=101.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCH
Q 003020 646 DVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS----LEASP-DVYTSNCMIDLYSERSMV 720 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~ 720 (856)
..|++++|.+.++.+... ......++..+...+...|++++|+..+++..+ .+..+ ....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456667776644444331 123445666777777777777777777766655 11111 234566777777788888
Q ss_pred HHHHHHHHHHHhC---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHhcCC
Q 003020 721 RQAEEIFEIMKKK---GDAN----EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI-SDL----LSYNNVLGLYAVDGR 788 (856)
Q Consensus 721 ~~A~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~----~~~~~l~~~~~~~g~ 788 (856)
++|.+.+++..+. .+.+ ..++..++.++...|++++|+..++++++.... .++ .++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888888776654 2322 345778888888888888888888888754211 122 346788889999999
Q ss_pred HHHHHHHHHHHHH
Q 003020 789 FKDVIGTFKDMVN 801 (856)
Q Consensus 789 ~~~A~~~~~~~~~ 801 (856)
+++|...+++.++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888876
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=4.9e-06 Score=84.93 Aligned_cols=208 Identities=11% Similarity=0.041 Sum_probs=165.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-CHHH
Q 003020 611 KLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVG-NVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKV-G-YLKE 687 (856)
Q Consensus 611 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-~~~~ 687 (856)
+.+..++|++++++++..++ -+..+|+.-...+...| .+++++.+++.++... |-+..+|+.-..++... + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 34556789999999998763 37788999888888888 5999999999999875 67889999988888887 7 8999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC------
Q 003020 688 AQETYKLLRSLEASPDVYTSNCMIDLYSERSMVR--------QAEEIFEIMKKKGDANEFTYAMMLIMYKRNGR------ 753 (856)
Q Consensus 688 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 753 (856)
++++++++++... -+...|+.-..++...|.++ ++++.++++.+..|.|..+|+....++.+.++
T Consensus 144 EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 9999999988543 46667777666666666665 99999999999999999999999999998887
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcC-----CCCC
Q 003020 754 -FEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRF--------------------KDVIGTFKDMVNAA-----IQPD 807 (856)
Q Consensus 754 -~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~g-----~~p~ 807 (856)
++++++.+++++...|. |...|+.+...+.+.|+. .+......++...+ -.+.
T Consensus 223 ~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 79999999999999998 999999999999888875 23333333333221 1356
Q ss_pred HHHHHHHHHHHHHcC
Q 003020 808 DFTFKSLGAVLMKCG 822 (856)
Q Consensus 808 ~~~~~~l~~~~~~~G 822 (856)
...+..|...+...|
T Consensus 302 ~~al~~l~d~~~~~~ 316 (349)
T 3q7a_A 302 PLALEYLADSFIEQN 316 (349)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC
Confidence 677888999998888
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=6.7e-08 Score=86.56 Aligned_cols=102 Identities=12% Similarity=-0.086 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003020 668 NAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIM 747 (856)
Q Consensus 668 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 747 (856)
+...+..++..+...|++++|+..|+.+....+ .+...|..+..++...|++++|+..|+++....|.++..+..++.+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 445677778888899999999999999888542 4677788889999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC
Q 003020 748 YKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
|...|++++|++.++++++..|.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999988765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-06 Score=86.81 Aligned_cols=167 Identities=10% Similarity=-0.044 Sum_probs=127.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 003020 601 PYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPD-----VVVYGVLINAFADVGNVKQAQSYFDAMESAGL---PPN--AV 670 (856)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~ 670 (856)
.+...+..+...|++++|.+.+.+.++...... ...+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 345567778889999999999998887543211 12344466667788999999999999876321 122 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC------CCH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSL-EASPD-----VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD------ANE 738 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~ 738 (856)
+++.++..|...|++++|+..|+++.+. ...|+ ..++..++.+|...|++++|++.++++.+..+ .-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8899999999999999999999988731 11122 25788999999999999999999998876431 126
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHHHc
Q 003020 739 FTYAMMLIMYKRNGRFEEA-TRIAKQMRES 767 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 767 (856)
.+|..++.+|...|++++| ...+++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7889999999999999999 7878888753
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.8e-07 Score=87.48 Aligned_cols=124 Identities=10% Similarity=0.070 Sum_probs=96.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCH--H
Q 003020 645 ADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDL-YSERSMV--R 721 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~ 721 (856)
...|++++|...+++..+.. +.+...+..++.+|...|++++|+..|+++.+... .+...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 34577788888888877654 56777888888888888888888888888877432 356667777777 7788888 8
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 722 QAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 722 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
+|...++++.+..|.+..++..++.+|...|++++|+..++++++..|.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 9999999988888888888999999999999999999999999988766
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=7e-07 Score=76.43 Aligned_cols=112 Identities=13% Similarity=0.001 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY 748 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 748 (856)
...+..++..+...|++++|...|++..+... .+...+..++.++...|++++|...++++.+..|.++..+..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45667777888888888888888888877432 35667778888888888889998888888888888888888889999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003020 749 KRNGRFEEATRIAKQMRESGLISDLLSYNNVLGL 782 (856)
Q Consensus 749 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 782 (856)
...|++++|.+.++++++.+|. ++..+..++.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHh
Confidence 9999999999999999888776 66777666654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.66 E-value=3e-07 Score=80.57 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CC----HHHHHH
Q 003020 705 YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI--SD----LLSYNN 778 (856)
Q Consensus 705 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~~ 778 (856)
..+..++..+...|++++|...++++....|.++.++..++.++...|++++|+..++++++..+. ++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 456677777888888888888888888877888888888888888888888888888888877553 11 677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 779 VLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVL 818 (856)
Q Consensus 779 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 818 (856)
++.+|...|++++|...|+++++. .|+...+..+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 888888888888888888888874 45655555554443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.63 E-value=7e-07 Score=88.02 Aligned_cols=126 Identities=11% Similarity=-0.000 Sum_probs=54.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC--ChHhHHHHHHHHHhc
Q 003020 535 MVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVS--DCIPYCAVISSYMKL 612 (856)
Q Consensus 535 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 612 (856)
+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .| ....+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 3344444444444444444443321 222233333334444444444444444332211 00 012344445555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003020 613 GQLEMAEEVYKDMIRFNVEPD--VVVYGVLINAFADVGNVKQAQSYFDAMESA 663 (856)
Q Consensus 613 g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 663 (856)
|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 555555555555543221122 223444444555555555555555555554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-06 Score=79.01 Aligned_cols=108 Identities=10% Similarity=-0.056 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPD----VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMM 744 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 744 (856)
...+..++..+...|++++|+..|++..+.. |+ ...+..+..+|...|++++|+..++++.+..|.+...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3444444445555555555555555544422 33 23444444444445555555555555444444444444455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 745 LIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNV 779 (856)
Q Consensus 745 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 779 (856)
+.++...|++++|++.++++++..|. +...+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 139 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEAL 139 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHH
Confidence 55555555555555555555544443 33333333
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.1e-07 Score=83.75 Aligned_cols=111 Identities=11% Similarity=-0.046 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003020 667 PNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLI 746 (856)
Q Consensus 667 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 746 (856)
.+...+..++..+...|++++|+..|++.++... .+...|..+..+|...|++++|+..++++++..|.+..+|..++.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456788888889999999999999998888542 367788889999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 747 MYKRNGRFEEATRIAKQMRESGLISDLLSYNNV 779 (856)
Q Consensus 747 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 779 (856)
+|...|++++|++.|+++++..|. +...|...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~ 119 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGN-GGSDAMKR 119 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSS-SCCHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 999999999999999999998877 54544333
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.60 E-value=7.1e-07 Score=85.38 Aligned_cols=157 Identities=11% Similarity=0.087 Sum_probs=108.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCC
Q 003020 610 MKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMES----AGLP-PNAVIYNSLIKLYTKVGY 684 (856)
Q Consensus 610 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~g~ 684 (856)
...|++++|.+.++.+.. .+.....++..+...+...|++++|...+++... .+.+ ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 346778888875554433 2223456777788888888888888888887765 1112 234567788888888899
Q ss_pred HHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCH----HHHHHHHHHHHHcC
Q 003020 685 LKEAQETYKLLRSL----EASP--DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKG--DANE----FTYAMMLIMYKRNG 752 (856)
Q Consensus 685 ~~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~l~~~~~~~g 752 (856)
+++|...+++..+. +..| ....+..+...+...|++++|...+++..... ..+. .++..++.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99998888877652 1111 13457778888888999999999988877543 2222 34678889999999
Q ss_pred CHHHHHHHHHHHHHc
Q 003020 753 RFEEATRIAKQMRES 767 (856)
Q Consensus 753 ~~~~A~~~~~~~~~~ 767 (856)
++++|.+.++++++.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-06 Score=78.80 Aligned_cols=112 Identities=10% Similarity=-0.036 Sum_probs=98.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003020 702 PDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN---EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNN 778 (856)
Q Consensus 702 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 778 (856)
.+...+..++..+...|++++|++.++++.+..|.+ ..++..++.+|...|++++|+..++++++..|. ++..+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 456788889999999999999999999999988776 789999999999999999999999999999887 8899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 003020 779 VLGLYAVDGRFKDVIGTFKDMVNAAIQPDD-FTFKSLGA 816 (856)
Q Consensus 779 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~ 816 (856)
++.+|...|++++|...|++.++. .|+. ..+..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 141 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHH
Confidence 999999999999999999999985 5654 34444433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-06 Score=77.55 Aligned_cols=101 Identities=13% Similarity=-0.006 Sum_probs=72.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC-------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CC
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKKGDA-------N-----EFTYAMMLIMYKRNGRFEEATRIAKQMRES-------GL 769 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~ 769 (856)
..+..+...|++++|++.|+++++..|. + ...|..++.++.+.|++++|+..++++++. +|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3344444555555555555555544443 3 338888888888888888888888888888 77
Q ss_pred CCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 003020 770 ISDLLSY----NNVLGLYAVDGRFKDVIGTFKDMVN-----AAIQPDDFT 810 (856)
Q Consensus 770 ~p~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~ 810 (856)
. +...| +..+.++...|++++|+..|++.++ .|+.+....
T Consensus 96 d-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 96 D-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp T-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred c-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 6 77788 8999999999999999999998877 345555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-07 Score=95.02 Aligned_cols=196 Identities=9% Similarity=0.011 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003020 563 DKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLIN 642 (856)
Q Consensus 563 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 642 (856)
+...+..+...+...|++++|+..++++++.. +.+...+..+..+|.+.|++++|+..++++++.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556666667777777777777777776653 3366778888888888888888888888888764 336778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003020 643 AFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQ 722 (856)
Q Consensus 643 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 722 (856)
++...|++++|...|++..+.+ +.+...+...+....+. .++... ..........+......+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 8888999999998888876642 11111111111111111 111111 222223333444444444333 2688999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc
Q 003020 723 AEEIFEIMKKKGDANEFTYAMMLIMYKRN-GRFEEATRIAKQMRES 767 (856)
Q Consensus 723 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 767 (856)
|++.++++.+..|.+......+...+.+. +.+++|.++|.++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999888888877777777777666 6788999999888764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.58 E-value=5e-07 Score=82.94 Aligned_cols=72 Identities=14% Similarity=0.090 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 735 DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 735 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
|.+..+|..++.+|.+.|++++|+..++++++.+|. ++..|..++.+|...|++++|+..|++.++. .|+..
T Consensus 60 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 60 RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 334456666666666667777777777776666665 6666666667777777777777777666663 45443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-06 Score=76.44 Aligned_cols=98 Identities=8% Similarity=-0.070 Sum_probs=73.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKKGDANE---FTYAMMLIMYKRNGRFEEATRIAKQMRESGLISD---LLSYNNVLGL 782 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~ 782 (856)
.++..+...|++++|...++++.+..|.++ .++..++.++...|++++|+..++++++..|. + +.++..++.+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 455667777888888888888777766666 57777888888888888888888888877766 4 5677778888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 783 YAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 783 ~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
|...|++++|+..|+++++. .|+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~--~p~~~ 110 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ--YPGSD 110 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTSH
T ss_pred HHHcCCHHHHHHHHHHHHHH--CCCCh
Confidence 88888888888888887774 45543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.6e-07 Score=89.71 Aligned_cols=142 Identities=8% Similarity=-0.010 Sum_probs=109.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH----------------HH
Q 003020 677 KLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANE----------------FT 740 (856)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~ 740 (856)
......|.++++.+.|+...+.. ......+..++..+...|++++|+..|+++.+..|.++ .+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33445566777766665322210 01244677888899999999999999999999877665 88
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003020 741 YAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD-DFTFKSLGAVLM 819 (856)
Q Consensus 741 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~ 819 (856)
+..++.+|...|++++|+..++++++..|. ++.++..++.+|...|++++|+..|++.++. .|+ ...+..+..++.
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999887 8899999999999999999999999999985 554 455777777777
Q ss_pred HcC
Q 003020 820 KCG 822 (856)
Q Consensus 820 ~~G 822 (856)
..|
T Consensus 168 ~~~ 170 (198)
T 2fbn_A 168 KLK 170 (198)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-06 Score=91.26 Aligned_cols=150 Identities=13% Similarity=-0.006 Sum_probs=113.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHH
Q 003020 614 QLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPN---------------AVIYNSLIKL 678 (856)
Q Consensus 614 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---------------~~~~~~l~~~ 678 (856)
++++|...|+...+.. +.+...+..+...+.+.|++++|+..|++.+... +.+ ..+|..+..+
T Consensus 128 ~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333221 1134566667777777777777777777776653 222 5788899999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHH-
Q 003020 679 YTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEA- 757 (856)
Q Consensus 679 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A- 757 (856)
|.+.|++++|+..|+++++... .+...|..+..+|...|++++|+..|+++++..|.+..++..++.++...|++++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988542 46778889999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHH
Q 003020 758 TRIAKQMRE 766 (856)
Q Consensus 758 ~~~~~~~~~ 766 (856)
...|++|..
T Consensus 285 ~~~~~~~~~ 293 (336)
T 1p5q_A 285 KKLYANMFE 293 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456776654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-06 Score=77.56 Aligned_cols=104 Identities=10% Similarity=-0.134 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003020 666 PPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMML 745 (856)
Q Consensus 666 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 745 (856)
+.+...+..++..+...|++++|+..|+...+... .+...+..++.++...|++++|+..++++.+..|.++.++..++
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45678888889999999999999999998887542 45778888899999999999999999999998899999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 746 IMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 746 ~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.++...|++++|+..++++++..|.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 9999999999999999999887544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-06 Score=75.95 Aligned_cols=105 Identities=11% Similarity=0.037 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-------HHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN-------EFTYA 742 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~ 742 (856)
..+..++..+.+.|++++|++.|+++++..+ .+...|..++.+|...|++++|++.++++++..|.+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4566777778888888888888887777432 346677777888888888888888888777655322 23677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003020 743 MMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYN 777 (856)
Q Consensus 743 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 777 (856)
.++.++...|++++|++.|+++++..+ ++....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~--~~~~~~ 120 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFR--DPELVK 120 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSC--CHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc--CHHHHH
Confidence 888888899999999999999888654 544443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.51 E-value=8.3e-07 Score=96.85 Aligned_cols=97 Identities=11% Similarity=-0.076 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 783 (856)
...|..+..+|.+.|++++|+..++++++..|.+..+|..++.+|...|++++|+..|+++++..|. +..++..++.++
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~ 395 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4577788888999999999999999999988999999999999999999999999999999998877 778888999999
Q ss_pred HhcCCHHHHH-HHHHHHHH
Q 003020 784 AVDGRFKDVI-GTFKDMVN 801 (856)
Q Consensus 784 ~~~g~~~~A~-~~~~~~~~ 801 (856)
...|++++|. ..+++|..
T Consensus 396 ~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 396 KKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999888776 34555544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=3.1e-07 Score=81.25 Aligned_cols=104 Identities=13% Similarity=0.003 Sum_probs=85.8
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003020 715 SERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRF----------EEATRIAKQMRESGLISDLLSYNNVLGLYA 784 (856)
Q Consensus 715 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 784 (856)
.+.+.+++|++.+++..+..|.++..|..++.++...+++ ++|+..|+++++.+|. +..+|+.++.+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3456688888999998888888999998888888888765 5999999999999988 8899999999998
Q ss_pred hcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003020 785 VDG-----------RFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLMKC 821 (856)
Q Consensus 785 ~~g-----------~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 821 (856)
..| ++++|++.|+++++ +.|+...|...+...-+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ka 137 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTAKA 137 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHhC
Confidence 875 89999999999998 588887776665544443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.3e-07 Score=79.75 Aligned_cols=84 Identities=11% Similarity=0.035 Sum_probs=52.2
Q ss_pred cCCHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003020 717 RSMVRQAEEIFEIMKKKG---DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVI 793 (856)
Q Consensus 717 ~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 793 (856)
.|++++|+..|+++++.+ |.+..++..++.+|...|++++|+..++++++..|. ++..+..++.+|...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 455666666666666653 445556666666666666666666666666666665 5666666666666666666666
Q ss_pred HHHHHHHH
Q 003020 794 GTFKDMVN 801 (856)
Q Consensus 794 ~~~~~~~~ 801 (856)
..+++.++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666665
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-06 Score=74.43 Aligned_cols=98 Identities=9% Similarity=-0.128 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 003020 705 YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI-SDLLSYNNVLGLY 783 (856)
Q Consensus 705 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~ 783 (856)
..+..++..+...|++++|...++++.+..|.+..++..++.++...|++++|++.++++++..+. .+...+..++.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 345566666777777777777777777766777777777777777777777777777777776543 1356677777777
Q ss_pred Hhc-CCHHHHHHHHHHHHHc
Q 003020 784 AVD-GRFKDVIGTFKDMVNA 802 (856)
Q Consensus 784 ~~~-g~~~~A~~~~~~~~~~ 802 (856)
... |++++|++.+++.++.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 777 7777777777777664
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-06 Score=80.57 Aligned_cols=115 Identities=13% Similarity=-0.010 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CC--------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSL--------EA--------S-PDVYTSNCMIDLYSERSMVRQAEEIFEIMKK 732 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~--------~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 732 (856)
..+...+..+.+.|++++|+..|++.++. .. . .+...|..+..+|...|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555566666666666666666665553 00 1 2245788889999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh
Q 003020 733 KGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDL-LSYNNVLGLYAV 785 (856)
Q Consensus 733 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~ 785 (856)
..|.++.+|..++.+|...|++++|+..++++++..|. ++ .....+..+...
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA-AASVVAREMKIVTER 144 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877 65 445555544433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=1.4e-06 Score=75.28 Aligned_cols=99 Identities=10% Similarity=-0.128 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR 750 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 750 (856)
.+..++..+.+.|++++|+..|+++++... .+...|..+..++...|++++|+..++++.+..|.+..++..++.++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 345667788899999999999999888542 3677888889999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCC
Q 003020 751 NGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 751 ~g~~~~A~~~~~~~~~~~~~ 770 (856)
.|++++|+..++++++..|.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCcC
Confidence 99999999999999987654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=5.6e-06 Score=92.27 Aligned_cols=174 Identities=6% Similarity=-0.014 Sum_probs=142.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003020 614 QLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGN----------VKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVG 683 (856)
Q Consensus 614 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 683 (856)
..++|++.+++++..++ .+..+|+.-..++...|+ +++++..++++.+.. |-+..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 45677888988888753 367788877777777776 889999999998875 667888888888888888
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc---------
Q 003020 684 --YLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERS-MVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN--------- 751 (856)
Q Consensus 684 --~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 751 (856)
+++++++.++++.+.+. -+...|+....++...| .++++++.++++.+..|.|..+|+....++...
T Consensus 122 ~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 122 EPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 67999999999988553 46777888777888888 889999999999998899999999888888774
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003020 752 -----GRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKD 791 (856)
Q Consensus 752 -----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 791 (856)
+.+++|++.++++++..|. |..+|+.+...+.+.|++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5578999999999999888 88999999999888888555
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.6e-06 Score=73.27 Aligned_cols=104 Identities=12% Similarity=-0.014 Sum_probs=93.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CHHHHHHH
Q 003020 667 PNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA--NEFTYAMM 744 (856)
Q Consensus 667 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l 744 (856)
.+...+..++..+...|++++|+..|+++.+... .+...+..++.++...|++++|.+.++++.+..|. +..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 3556778889999999999999999999988542 45778889999999999999999999999999998 99999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHcCCCC
Q 003020 745 LIMYKRN-GRFEEATRIAKQMRESGLIS 771 (856)
Q Consensus 745 ~~~~~~~-g~~~~A~~~~~~~~~~~~~p 771 (856)
+.++... |++++|++.++++.+..|.+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 9999999 99999999999999988763
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-06 Score=75.90 Aligned_cols=113 Identities=14% Similarity=0.099 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-------HHHH
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN-------EFTY 741 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~ 741 (856)
...+..++..+...|++++|+..|+++.+.. +.+...+..++.++...|++++|...++++....|.+ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456677777777888888888887777643 2356667777778888888888888888877765444 7788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003020 742 AMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYA 784 (856)
Q Consensus 742 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 784 (856)
..++.++...|++++|.+.++++++..+ ++..+..+..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR--TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 8888888899999999999998888764 5666666655544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=5.1e-06 Score=92.60 Aligned_cols=170 Identities=9% Similarity=0.014 Sum_probs=146.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003020 648 GNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGY----------LKEAQETYKLLRSLEASPDVYTSNCMIDLYSER 717 (856)
Q Consensus 648 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 717 (856)
...++|++.+++++..+ |-+..+|+.-..++...|+ ++++++.++.+.+... -+...|+.-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 34578899999999875 6677889988888888887 9999999999998543 4567888888888899
Q ss_pred C--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------
Q 003020 718 S--MVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG-RFEEATRIAKQMRESGLISDLLSYNNVLGLYAVD-------- 786 (856)
Q Consensus 718 g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------- 786 (856)
+ +++++++.++++.+.+|.|..+|+....++.+.| .++++++.++++++.+|. +..+|+..+.++...
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 9 7799999999999999999999999999999999 899999999999999998 999999999998874
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcC
Q 003020 787 ------GRFKDVIGTFKDMVNAAIQPDDF-TFKSLGAVLMKCG 822 (856)
Q Consensus 787 ------g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~G 822 (856)
++++++++.+++++.. .|+.. .|..+...+.+.|
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCC
T ss_pred cccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCC
Confidence 5689999999999984 66654 5777777777766
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.7e-07 Score=77.76 Aligned_cols=94 Identities=12% Similarity=0.029 Sum_probs=75.9
Q ss_pred hcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003020 681 KVGYLKEAQETYKLLRSLEA--SPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEAT 758 (856)
Q Consensus 681 ~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 758 (856)
..|++++|+..|+++++.+. +.+...+..++.+|...|++++|+..++++.+..|.++.++..++.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46788899999999888531 2235578888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHH
Q 003020 759 RIAKQMRESGLISDLLS 775 (856)
Q Consensus 759 ~~~~~~~~~~~~p~~~~ 775 (856)
..++++++..|. ++..
T Consensus 82 ~~~~~al~~~p~-~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSD-DETI 97 (117)
T ss_dssp HHHHHHHHHHCC-CHHH
T ss_pred HHHHHHHHhCCC-cHHH
Confidence 999999998776 5543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.41 E-value=7.4e-06 Score=71.43 Aligned_cols=106 Identities=11% Similarity=-0.035 Sum_probs=80.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHH
Q 003020 673 NSLIKLYTKVGYLKEAQETYKLLRSLEASPD--VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDAN---EFTYAMMLIM 747 (856)
Q Consensus 673 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~ 747 (856)
..++..+...|++++|...|+.+.+...... ...+..++.++...|++++|...++++.+..|.+ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3456677788888888888888877432111 1466677888888899999999998888887777 7778888899
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 748 YKRNGRFEEATRIAKQMRESGLISDLLSYNNV 779 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 779 (856)
+...|++++|+..++++++..|. ++......
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~a~ 116 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPG-SDAARVAQ 116 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-SHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-ChHHHHHH
Confidence 99999999999999999888765 54444433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.3e-06 Score=90.13 Aligned_cols=90 Identities=11% Similarity=-0.120 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 704 VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783 (856)
Q Consensus 704 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 783 (856)
...|..+..+|.+.|++++|++.++++++..|.+..+|..++.+|...|++++|++.++++++..|. +...+..+..++
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~ 351 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4567777778888888888888888888877888888888888888888888888888888888776 777777888887
Q ss_pred HhcCCHHHHHH
Q 003020 784 AVDGRFKDVIG 794 (856)
Q Consensus 784 ~~~g~~~~A~~ 794 (856)
...++.+++.+
T Consensus 352 ~~~~~~~~a~k 362 (370)
T 1ihg_A 352 QKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776643
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.4e-06 Score=79.60 Aligned_cols=132 Identities=9% Similarity=-0.008 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CC----H
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEA-SPD----VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGD--AN----E 738 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~----~ 738 (856)
.++..++..+...|++++|+..+++..+... .++ ...+..+...+...|++++|.+.++++.+..+ .+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3455666666667777777776666554210 011 13566677777777888888887777665431 11 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 739 FTYAMMLIMYKRNGRFEEATRIAKQMRESGLI-S----DLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
.++..++.++...|++++|++.++++++.... . ...++..++.+|...|++++|.+.+++.++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 46778888889999999999999888765211 1 135678889999999999999999998876
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.40 E-value=7.4e-07 Score=97.68 Aligned_cols=122 Identities=12% Similarity=-0.055 Sum_probs=102.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 003020 674 SLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGR 753 (856)
Q Consensus 674 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 753 (856)
.++..+.+.|++++|++.|+++.+... .+...|..+..+|.+.|++++|++.++++.+..|.+..++..++.+|...|+
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 344556778999999999999888532 3577888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 003020 754 FEEATRIAKQMRESGLISDLLSYNNVLGL--YAVDGRFKDVIGTFK 797 (856)
Q Consensus 754 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 797 (856)
+++|++.++++++..|. +...+..++.+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999887 66778778777 888999999999998
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=7.2e-06 Score=89.12 Aligned_cols=194 Identities=9% Similarity=-0.010 Sum_probs=119.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-
Q 003020 608 SYMKLGQLEMAEEVYKDMIRFNVEPD----------------VVVYGVLINAFADVGNVKQAQSYFDAMESAG-LPPNA- 669 (856)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~- 669 (856)
.+.+.|++++|++.|..+++...... ..++..++..|...|++++|.+++..+.+.- ..++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 34555666666666666665322110 1235667777777777777777777665421 01111
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------C
Q 003020 670 ---VIYNSLIKLYTKVGYLKEAQETYKLLRS----LEASPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKKG------D 735 (856)
Q Consensus 670 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~ 735 (856)
.+.+.+...+...|++++|..+++.... .+..+. ..++..++..|...|++++|..+++++.... +
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 2233444445556777888777766544 222222 3466677778888888888888877765432 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 736 ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESG---LISD---LLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 736 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
....++..++..|...|++++|..++++++... +.|. ...+..++..+...|++++|...|.++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 234467777888888888888888887776542 1111 24566677777788888888877777655
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.37 E-value=2.1e-06 Score=76.12 Aligned_cols=101 Identities=12% Similarity=-0.026 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASP------DV-----YTSNCMIDLYSERSMVRQAEEIFEIMKKK----- 733 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 733 (856)
..+...+..+.+.|++++|+..|++.++..... +. ..|..+..++...|++++|+..++++++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345556666777777888877777777633220 22 37888888899999999999999999888
Q ss_pred --CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 734 --GDANEFTY----AMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 734 --~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.|.+...| ...+.++...|++++|+..|+++++..|.
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 89999999 99999999999999999999999988655
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.35 E-value=6.6e-07 Score=93.35 Aligned_cols=149 Identities=8% Similarity=-0.011 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003020 634 VVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDL 713 (856)
Q Consensus 634 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 713 (856)
...+..+...+.+.|++++|+..|++.+... |+... +...|+++++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4567777777788888888888888877652 33321 223344444433221 1267788889
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHH
Q 003020 714 YSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGL-YAVDGRFKDV 792 (856)
Q Consensus 714 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A 792 (856)
|.+.|++++|+..++++++..|.+..+|..++.+|...|++++|+..|+++++..|. +...+..+..+ ....+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988877 77788888777 4456777888
Q ss_pred HHHHHHHHHc
Q 003020 793 IGTFKDMVNA 802 (856)
Q Consensus 793 ~~~~~~~~~~ 802 (856)
..+|++|+..
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8999998763
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.29 E-value=5.7e-06 Score=70.59 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 722 QAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 722 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+|++.++++.+..|.++..+..++.+|...|++++|+..++++++..|. +...|..++.+|...|++++|...|++.++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5778888888888889999999999999999999999999999998877 788899999999999999999999998877
Q ss_pred cC-CCCCHHHHHHHHHHHHHcC
Q 003020 802 AA-IQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 802 ~g-~~p~~~~~~~l~~~~~~~G 822 (856)
.. -.++......+...+.+.|
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhc
Confidence 31 1133444445544444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.27 E-value=8.4e-06 Score=88.88 Aligned_cols=113 Identities=9% Similarity=0.055 Sum_probs=86.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003020 707 SNCMIDLYSERSMVRQAEEIFEIMKKKGDAN---------------EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS 771 (856)
Q Consensus 707 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 771 (856)
+..+...+.+.|++++|+..|+++++..|.+ ..+|..++.+|.+.|++++|+..++++++..|.
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~- 349 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA- 349 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-
Confidence 3344444444444444444444444443333 578999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcC
Q 003020 772 DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF-TFKSLGAVLMKCG 822 (856)
Q Consensus 772 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~G 822 (856)
++.+|..++.+|...|++++|+..|+++++ +.|+.. .+..+..++.+.|
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAK 399 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999998 467654 5778888888887
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.27 E-value=8.8e-06 Score=85.70 Aligned_cols=131 Identities=8% Similarity=-0.074 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYK 749 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 749 (856)
..+..++..+.+.|++++|+..|+++++.- +.. .. ....+......|.+..+|..++.+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~-------~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RA-------AAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HH-------HSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------cc-------ccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666555410 000 00 00111222244667789999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcC
Q 003020 750 RNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD-DFTFKSLGAVLMKCG 822 (856)
Q Consensus 750 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~G 822 (856)
+.|++++|++.++++++..|. ++.+|..++.+|...|++++|+..|+++++. .|+ ...+..+..++.+.|
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999887 8899999999999999999999999999985 564 455777777777777
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.27 E-value=4e-06 Score=91.85 Aligned_cols=117 Identities=13% Similarity=0.057 Sum_probs=64.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003020 644 FADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQA 723 (856)
Q Consensus 644 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 723 (856)
+.+.|++++|+..|++..+.. +.+..+|..++.+|.+.|++++|++.|+++.+... .+...+..++.+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 444555666666666555542 33455566666666666666666666666655431 2344555666666666666666
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 003020 724 EEIFEIMKKKGDANEFTYAMMLIM--YKRNGRFEEATRIAK 762 (856)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 762 (856)
++.++++.+..|.+..++..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666555555555555555 555666666666666
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.9e-05 Score=83.24 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=17.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCC
Q 003020 536 VKAYGMGRNYDKACNLFDSMTSHG 559 (856)
Q Consensus 536 i~~~~~~g~~~~A~~~~~~m~~~~ 559 (856)
...+.+.|++++|++.|..+.+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~ 34 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKD 34 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC
Confidence 455677788888888888877753
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-06 Score=74.29 Aligned_cols=95 Identities=8% Similarity=0.030 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------HHHH
Q 003020 703 DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISD------LLSY 776 (856)
Q Consensus 703 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~ 776 (856)
+...+..++..+...|++++|++.++++.+..|.++.++..++.++...|++++|++.++++++..|. + ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 34566677778888888888888888888888888888888888888888888888888888887766 4 5667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 003020 777 NNVLGLYAVDGRFKDVIGTFKD 798 (856)
Q Consensus 777 ~~l~~~~~~~g~~~~A~~~~~~ 798 (856)
..++.++...|++++|+..+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 7777888777777776655543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.17 E-value=8e-06 Score=67.54 Aligned_cols=87 Identities=16% Similarity=0.152 Sum_probs=65.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHH
Q 003020 734 GDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAA-IQPDDFTFK 812 (856)
Q Consensus 734 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~ 812 (856)
.|.++.++..++.+|...|++++|++.++++++.+|. ++..|..++.+|...|++++|+..|++.++.. -.++.....
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 4778888888888888999999999999999888877 77888888999999999999999888887631 134555555
Q ss_pred HHHHHHHHc
Q 003020 813 SLGAVLMKC 821 (856)
Q Consensus 813 ~l~~~~~~~ 821 (856)
.+...+.+.
T Consensus 82 ~l~~~l~~~ 90 (100)
T 3ma5_A 82 ELQDAKLKA 90 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 555554443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.15 E-value=2.4e-05 Score=63.03 Aligned_cols=80 Identities=13% Similarity=0.066 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAV 785 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 785 (856)
.+..+...+...|++++|+..++++.+..|.+..++..++.++...|++++|+..++++++..|. ++..+..++.++..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHh
Confidence 44445555555555555555555555555555555555555555555555555555555555544 45555555555544
Q ss_pred c
Q 003020 786 D 786 (856)
Q Consensus 786 ~ 786 (856)
.
T Consensus 90 ~ 90 (91)
T 1na3_A 90 Q 90 (91)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-05 Score=73.21 Aligned_cols=132 Identities=17% Similarity=0.112 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HH
Q 003020 636 VYGVLINAFADVGNVKQAQSYFDAMESAGL-PPN----AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEA-SPD----VY 705 (856)
Q Consensus 636 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~ 705 (856)
++..+...+...|++++|...+++..+... .++ ..++..++..+...|++++|...+++..+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 444555555556666666666655543210 011 13566666677777777777777766554110 011 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC--C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKG--D----ANEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
.+..+..++...|++++|.+.++++.+.. . ....++..++..+...|++++|.+.++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 56667777777888888888777766542 1 12346778888888999999999998888765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.5e-05 Score=86.59 Aligned_cols=104 Identities=13% Similarity=0.013 Sum_probs=57.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhC-----C-CCccH-HHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchh
Q 003020 231 TYGTLIDVCSKGGLKEEAVCWLERMNEG-----G-MEPDE-VTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTK 303 (856)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 303 (856)
+++.++.+|..+|++++|..+++++++. | -+|+. .+++.+...|..+|++++|+.+|++....
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i---------- 422 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI---------- 422 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------
Confidence 4555555555555555555555554432 2 12232 35566666666666666666666655432
Q ss_pred hhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 304 TMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLR 349 (856)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 349 (856)
.+....++++....+.+.+..++...+.+++|..+|.++.+
T Consensus 423 -----~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 423 -----LLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp -----HHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112334444455666677777777777777777777754
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.7e-05 Score=84.56 Aligned_cols=123 Identities=10% Similarity=-0.065 Sum_probs=88.9
Q ss_pred HHhcCCHHHHHHHHHHHHhC---CCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCH---HHHHH
Q 003020 679 YTKVGYLKEAQETYKLLRSL---EAS---PD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKK-----GDANE---FTYAM 743 (856)
Q Consensus 679 ~~~~g~~~~A~~~~~~~~~~---~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~---~~~~~ 743 (856)
+..+|++++|+.++++.++. -+. |+ ..+++.|+.+|...|++++|+.++++++.. ++.++ .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667777777777766542 111 22 346777888888888888888888776543 33333 46788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 744 MLIMYKRNGRFEEATRIAKQMRE-----SGLISDL---LSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 744 l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
|+.+|..+|++++|+.+++++++ .|+. .+ .+...+..++...|++++|..+|+++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999988875 3655 44 34577788888999999999999998773
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=7.9e-05 Score=65.73 Aligned_cols=111 Identities=10% Similarity=-0.057 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 003020 683 GYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR----NGRFEEAT 758 (856)
Q Consensus 683 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 758 (856)
+++++|+++|++..+.+. |+.. +...|...+.+++|++.|++..+. .++.++..|+..|.. .+++++|+
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 356677777777766552 3333 556666666677777777777765 466677777777777 67788888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 003020 759 RIAKQMRESGLISDLLSYNNVLGLYAV----DGRFKDVIGTFKDMVNAA 803 (856)
Q Consensus 759 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 803 (856)
+.|+++.+.+ ++.++..|+..|.. .+++++|+.+|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 8888877764 66777777777777 777888888888877765
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.04 E-value=9.5e-06 Score=84.48 Aligned_cols=152 Identities=13% Similarity=0.029 Sum_probs=88.3
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003020 599 CIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKL 678 (856)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 678 (856)
...+..+...+.+.|++++|+..|++++.. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 455778888899999999999999999875 344332 223344444443221 1378888999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-HHcCCHHHH
Q 003020 679 YTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY-KRNGRFEEA 757 (856)
Q Consensus 679 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A 757 (856)
|.+.|++++|+..|+++++... .+...|..+..+|...|++++|+..|+++.+..|.+..++..+..+. ...+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988542 45778889999999999999999999999988888888888888774 455678888
Q ss_pred HHHHHHHHHcCCC
Q 003020 758 TRIAKQMRESGLI 770 (856)
Q Consensus 758 ~~~~~~~~~~~~~ 770 (856)
.+.|++++...|.
T Consensus 319 ~~~~~~~l~~~p~ 331 (338)
T 2if4_A 319 KEMYKGIFKGKDE 331 (338)
T ss_dssp -------------
T ss_pred HHHHHHhhCCCCC
Confidence 9999999887665
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.03 E-value=4.5e-05 Score=61.40 Aligned_cols=83 Identities=17% Similarity=0.270 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 003020 737 NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD-DFTFKSLG 815 (856)
Q Consensus 737 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 815 (856)
+...+..++..+...|++++|+..++++++..|. ++..+..++.+|...|++++|+..+++.++. .|+ ...+..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 4668889999999999999999999999999887 8899999999999999999999999999985 454 55677787
Q ss_pred HHHHHcC
Q 003020 816 AVLMKCG 822 (856)
Q Consensus 816 ~~~~~~G 822 (856)
.++.+.|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 7777655
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.7e-05 Score=70.15 Aligned_cols=89 Identities=12% Similarity=0.009 Sum_probs=65.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 003020 681 KVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSM----------VRQAEEIFEIMKKKGDANEFTYAMMLIMYKR 750 (856)
Q Consensus 681 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 750 (856)
+.+.+++|++.++...+... .+...|..+..++...++ +++|+..|+++++..|.+..+|+.++.+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 33445555555555555331 244455555555554443 5799999999999999999999999999988
Q ss_pred cC-----------CHHHHHHHHHHHHHcCCC
Q 003020 751 NG-----------RFEEATRIAKQMRESGLI 770 (856)
Q Consensus 751 ~g-----------~~~~A~~~~~~~~~~~~~ 770 (856)
.| ++++|++.|+++++.+|.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 75 899999999999999876
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.97 E-value=3.2e-05 Score=65.77 Aligned_cols=95 Identities=7% Similarity=-0.005 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 687 EAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 687 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
+|+..|+++.+... .+...+..++.+|...|++++|+..++++.+..|.+..+|..++.+|...|++++|+..++++++
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46777777777442 45677888888888999999999999999888888888999999999999999999999999887
Q ss_pred cCCC-CCHHHHHHHHHH
Q 003020 767 SGLI-SDLLSYNNVLGL 782 (856)
Q Consensus 767 ~~~~-p~~~~~~~l~~~ 782 (856)
..+. .+......+...
T Consensus 82 ~~~~~~~~~~~~~l~~~ 98 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVF 98 (115)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHH
Confidence 6543 233344444333
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.95 E-value=5.2e-05 Score=63.75 Aligned_cols=83 Identities=12% Similarity=0.002 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------H
Q 003020 737 NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDD-------F 809 (856)
Q Consensus 737 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-------~ 809 (856)
+...+..++..+...|++++|++.++++++..|. ++..|..++.+|...|++++|+..++++++. .|+. .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 4567889999999999999999999999999887 8999999999999999999999999999984 6664 3
Q ss_pred HHHHHHHHHHHcC
Q 003020 810 TFKSLGAVLMKCG 822 (856)
Q Consensus 810 ~~~~l~~~~~~~G 822 (856)
.+..+..++...|
T Consensus 80 ~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 80 LQYRLELAQGAVG 92 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00048 Score=60.60 Aligned_cols=111 Identities=10% Similarity=0.018 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 003020 648 GNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE----RSMVRQA 723 (856)
Q Consensus 648 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 723 (856)
+++++|+.+|++..+.| .|... +...|...+.+++|+++|++..+. .+...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL---NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35677888888887776 34443 666777777778888888887775 355666777777777 7888888
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 003020 724 EEIFEIMKKKGDANEFTYAMMLIMYKR----NGRFEEATRIAKQMRESG 768 (856)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 768 (856)
++.|++..+. .++.++..|+..|.. .+++++|++.|+++.+.|
T Consensus 81 ~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 8888888876 467778888888888 788899999999888876
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.78 E-value=9.6e-05 Score=60.87 Aligned_cols=84 Identities=15% Similarity=0.084 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 003020 702 PDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI-SDLLSYNNVL 780 (856)
Q Consensus 702 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~ 780 (856)
.+...+..++.+|...|++++|++.|+++.+..|.++.+|..++.+|...|++++|++.++++++..+. ++......+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 356677888888999999999999999999888888889999999999999999999999998876432 2444444444
Q ss_pred HHHHh
Q 003020 781 GLYAV 785 (856)
Q Consensus 781 ~~~~~ 785 (856)
..+..
T Consensus 85 ~~l~~ 89 (100)
T 3ma5_A 85 DAKLK 89 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.67 E-value=9.9e-05 Score=60.57 Aligned_cols=82 Identities=12% Similarity=0.106 Sum_probs=58.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003020 710 MIDLYSERSMVRQAEEIFEIMKKKGDANEF-TYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGR 788 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 788 (856)
.+..+...|++++|++.++++.+..|.+.. .+..++.+|...|++++|++.|+++++..|. +...+.. +.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~--------~~ 76 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH--------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH--------HH
Confidence 455667778888888888888887777877 8888888888888888888888888888776 5444422 44
Q ss_pred HHHHHHHHHHHH
Q 003020 789 FKDVIGTFKDMV 800 (856)
Q Consensus 789 ~~~A~~~~~~~~ 800 (856)
+.++...|++..
T Consensus 77 ~~~a~~~~~~~~ 88 (99)
T 2kc7_A 77 VMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHHHHHh
Confidence 455555555443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00042 Score=55.69 Aligned_cols=68 Identities=10% Similarity=0.054 Sum_probs=52.8
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 734 GDANEFTYAMMLIMYKRNGR---FEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 734 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
.|.++..+..++.++...++ .++|..+++++++.+|. ++.....++..+.+.|++++|+..|+++++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36677777777777765554 67888888888888877 7788888888888888888888888888774
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00087 Score=68.20 Aligned_cols=87 Identities=11% Similarity=0.177 Sum_probs=72.9
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003020 732 KKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTF 811 (856)
Q Consensus 732 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 811 (856)
...|.++.++..++..+...|++++|+..+++++..+ |+...|..++.++.-.|++++|.+.|++++. +.|...||
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 3448899999999988888899999999999999997 5778888999999999999999999999998 48888887
Q ss_pred HHHHHHHHHcC
Q 003020 812 KSLGAVLMKCG 822 (856)
Q Consensus 812 ~~l~~~~~~~G 822 (856)
...-+....+.
T Consensus 347 ~~~~~l~F~sn 357 (372)
T 3ly7_A 347 YWIENGIFQTS 357 (372)
T ss_dssp HHHHHSSSCCC
T ss_pred HHHhCceeecc
Confidence 65544443333
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00039 Score=74.09 Aligned_cols=83 Identities=14% Similarity=0.084 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHhC-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCH---HHHHHHHH
Q 003020 718 SMVRQAEEIFEIMKKK-----GDANE---FTYAMMLIMYKRNGRFEEATRIAKQMRES-----GLISDL---LSYNNVLG 781 (856)
Q Consensus 718 g~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~---~~~~~l~~ 781 (856)
|++++|+.++++.++. ++.++ .+++.|+.+|..+|++++|+.+++++++. |+. .+ .++++|+.
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-SLNVASMWLKLGR 390 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-ChHHHHHHHHHHH
Confidence 4555555555554432 23333 35677777788888888888888777643 444 33 56888899
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 003020 782 LYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 782 ~~~~~g~~~~A~~~~~~~~~ 801 (856)
+|..+|++++|+.+++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999888876
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0013 Score=70.17 Aligned_cols=88 Identities=14% Similarity=0.026 Sum_probs=61.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC-----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCH---HHH
Q 003020 713 LYSERSMVRQAEEIFEIMKKKG-----DANE---FTYAMMLIMYKRNGRFEEATRIAKQMRES-----GLISDL---LSY 776 (856)
Q Consensus 713 ~~~~~g~~~~A~~~~~~~~~~~-----~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~---~~~ 776 (856)
.+...|++++|+++++++++.. +.++ .+++.|+.+|..+|++++|+.+++++++. |+. .+ .++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-Hp~~a~~l 374 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-HPVRGVQV 374 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-ChHHHHHH
Confidence 3445667777777777776542 3333 35677777788888888888888777643 433 33 467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 777 NNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 777 ~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
+.|+.+|..+|++++|+.+++++++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8888888888888888888888766
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00054 Score=59.79 Aligned_cols=93 Identities=11% Similarity=0.059 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 720 VRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG---RFEEATRIAKQMRESG-LISDLLSYNNVLGLYAVDGRFKDVIGT 795 (856)
Q Consensus 720 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 795 (856)
...+.+.|++....++++..+...+++++.+.+ +.++++.+++++.+.+ |.-...+++.++-+|.+.|++++|.++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456677777777777888888889999999888 5668999999988876 321457888888899999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHH
Q 003020 796 FKDMVNAAIQPDDFTFKSL 814 (856)
Q Consensus 796 ~~~~~~~g~~p~~~~~~~l 814 (856)
++++++ +.|+..--..|
T Consensus 94 ~~~lL~--ieP~n~QA~~L 110 (152)
T 1pc2_A 94 VRGLLQ--TEPQNNQAKEL 110 (152)
T ss_dssp HHHHHH--HCTTCHHHHHH
T ss_pred HHHHHh--cCCCCHHHHHH
Confidence 999988 47876544443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00047 Score=73.46 Aligned_cols=85 Identities=13% Similarity=-0.007 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHhHHc-----CCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCC-Cc-ChhhHHHHHHH
Q 003020 172 SSWERALEIFEWFKRQ-----ECHELNV-IHYNIMLRTLGKARKWSYVQSLWDEMSV-----KGI-VP-INSTYGTLIDV 238 (856)
Q Consensus 172 ~~~~~A~~~~~~~~~~-----~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~-~p-~~~~~~~l~~~ 238 (856)
|+|++|+.+++.++.. ++.+|++ .+++.+..+|..+|+|++|+.++++++. .|. .| ...+++.++..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4455555555544332 2223333 4455555555555555555555554432 111 11 12234444444
Q ss_pred HHcCCCHHHHHHHHHHHH
Q 003020 239 CSKGGLKEEAVCWLERMN 256 (856)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~ 256 (856)
|..+|++++|+.+|++++
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 444444444444444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0018 Score=51.92 Aligned_cols=70 Identities=11% Similarity=-0.068 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 701 SPDVYTSNCMIDLYSERSM---VRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 701 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
+++...+..+..++...++ .++|..+++++++.+|.++.++..++..+...|++++|+..|+++++..|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3566777777777765444 799999999999999999999999999999999999999999999998766
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0037 Score=50.79 Aligned_cols=63 Identities=13% Similarity=0.257 Sum_probs=56.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003020 743 MMLIMYKRNGRFEEATRIAKQMRESGLISDLL-SYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDD 808 (856)
Q Consensus 743 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 808 (856)
..+..+...|++++|++.++++++..|. ++. .|..++.+|...|++++|+..|+++++. .|+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 68 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDS 68 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCc
Confidence 4677888999999999999999999887 888 9999999999999999999999999985 4543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0014 Score=69.97 Aligned_cols=88 Identities=9% Similarity=-0.074 Sum_probs=42.6
Q ss_pred HhcCCHHHHHHHHHHhHHc-----CCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCC-Cc-ChhhHHHH
Q 003020 169 KEQSSWERALEIFEWFKRQ-----ECHELNV-IHYNIMLRTLGKARKWSYVQSLWDEMSV-----KGI-VP-INSTYGTL 235 (856)
Q Consensus 169 ~~~~~~~~A~~~~~~~~~~-----~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~-~p-~~~~~~~l 235 (856)
..+|++++|+..++.++.. ++.+|++ .+++.++.+|..+|+|++|+.++++++. .|. .| ...+++.+
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 3455566666666555432 1122222 4555555555555666665555555443 111 11 12245555
Q ss_pred HHHHHcCCCHHHHHHHHHHHH
Q 003020 236 IDVCSKGGLKEEAVCWLERMN 256 (856)
Q Consensus 236 ~~~~~~~g~~~~A~~~~~~~~ 256 (856)
+..|..+|++++|+.+|++++
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHH
Confidence 555555555555555555544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0057 Score=62.23 Aligned_cols=74 Identities=7% Similarity=-0.109 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003020 701 SPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYN 777 (856)
Q Consensus 701 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 777 (856)
+.+...|..+...+...|++++|...+++++..+ ++...|..++..+.-.|++++|.+.|++++..+|. ..+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~--~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG--ANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS--HHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--cChHH
Confidence 4567777777777777799999999999999887 57778888899999999999999999999998764 34443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0038 Score=60.68 Aligned_cols=90 Identities=10% Similarity=0.053 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHH
Q 003020 720 VRQAEEIFEIMKKKGDA--NEFTYAMMLIMYKRN-----GRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVD-GRFKD 791 (856)
Q Consensus 720 ~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~ 791 (856)
...|..+++++++.+|. +...|..|+..|... |+.++|.+.|+++++.+|.-+..++..++..++.. |++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45666667777766665 556777777777663 77777777777777776653466677777777663 77777
Q ss_pred HHHHHHHHHHcCCC--CCHH
Q 003020 792 VIGTFKDMVNAAIQ--PDDF 809 (856)
Q Consensus 792 A~~~~~~~~~~g~~--p~~~ 809 (856)
|.+.+++.+..... |+..
T Consensus 259 a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHHcCCCCCCCChh
Confidence 77777777775444 4443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.83 E-value=5.7e-05 Score=77.79 Aligned_cols=257 Identities=12% Similarity=0.143 Sum_probs=143.7
Q ss_pred HHHhhccccccHHHHhhHhhhhcChhHHHH---HHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003020 137 SMLQALDTVKDLDEALKPWAENLSNKERSI---ILKEQSSWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYV 213 (856)
Q Consensus 137 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~---~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 213 (856)
.++.+....+.+.+|+..|-+.-+|..+.. +..+.|++++-..++.-+++.. .++..=+.|+-+|++.++..+.
T Consensus 59 ~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~ayAk~~rL~el 135 (624)
T 3lvg_A 59 QLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAEL 135 (624)
T ss_dssp SHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHHTSCSSSTT
T ss_pred HHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHHHHhhCcHHHH
Confidence 667777777888888887766444432222 2223445555555554443321 1222234555566665554443
Q ss_pred HHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhh
Q 003020 214 QSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSR 293 (856)
Q Consensus 214 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 293 (856)
++.+ -.||..-...++.-|...|.|+.|.-+|..+.. |..|...+.+.|++..|...-++
T Consensus 136 Eefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaArK---- 195 (624)
T 3lvg_A 136 EEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARK---- 195 (624)
T ss_dssp TSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTTT----
T ss_pred HHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHHh----
Confidence 3222 123444445555555555555555444443221 12222233344444444333222
Q ss_pred ccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHH
Q 003020 294 ESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLA 373 (856)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~ 373 (856)
. .++.||..+-.+|...+.+.-|.-.--.+.- .|| -...++..|...|.++
T Consensus 196 ---------------------A---ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ 246 (624)
T 3lvg_A 196 ---------------------A---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFE 246 (624)
T ss_dssp ---------------------C---CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCT
T ss_pred ---------------------c---CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHH
Confidence 2 2567999999999999998877555444432 222 3445677888999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH-HcCCC------CCHHhHHHHHHHHHhcCCHHHHH
Q 003020 374 EVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMK-EANLE------PDIVSYRTLLYAYSIRRMVCEAE 446 (856)
Q Consensus 374 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~------~~~~~~~~ll~~~~~~g~~~~A~ 446 (856)
+.+.+++..+... ......|+-|.-.|+|-. .++-++-++... +.+++ -....|.-+...|....+++.|.
T Consensus 247 ELIsLlEaglglE-rAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 247 ELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TSTTTHHHHTTST-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhCCC-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 9999999887432 456778888888888763 343333332211 11221 13456888888888888888765
Q ss_pred H
Q 003020 447 E 447 (856)
Q Consensus 447 ~ 447 (856)
.
T Consensus 325 l 325 (624)
T 3lvg_A 325 I 325 (624)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.015 Score=47.74 Aligned_cols=62 Identities=10% Similarity=0.000 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKK-------GDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.|+..+...|+++.|...++.+.+. +.....++..|+.++.+.|++++|+..++++++..|.
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 4444444444444444444444332 1223445555555555555555555555555555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.012 Score=48.38 Aligned_cols=72 Identities=7% Similarity=0.007 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 737 NEFTYAMMLIMYKRNGRFEEATRIAKQMRESG------LISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFT 810 (856)
Q Consensus 737 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 810 (856)
++.-+..|+..+...|+++.|+..++++++.. ..+.+..+..++.+|.+.|++++|+.+++++++ +.|+...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHH
Confidence 55667889999999999999999999998752 112567899999999999999999999999998 4777644
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.64 E-value=1.5 Score=50.50 Aligned_cols=171 Identities=10% Similarity=0.073 Sum_probs=79.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHHcCCHH
Q 003020 645 ADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSN---CMIDLYSERSMVR 721 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~ 721 (856)
.-.|+.+-...++..+.+.. ..+..-...+.-++...|+.+.+..+.+.+.... .| ..-|. .+.-+|+..|+..
T Consensus 501 vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHH
T ss_pred cccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHH
Confidence 34455555555555555431 1111222222233335566666666666665421 12 12222 2233455666665
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 003020 722 QAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRF-KDVIGTFKDMV 800 (856)
Q Consensus 722 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 800 (856)
....++..+.+....+......++-++...|+.+.+.++++.+.+.+ .|....-..++-+....|.. .+|+.++..+.
T Consensus 578 aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 578 AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 55556666665433333333333334444555555555555444432 12222222233333333333 56667777765
Q ss_pred HcCCCCCHHHHHHHHHHHHHcC
Q 003020 801 NAAIQPDDFTFKSLGAVLMKCG 822 (856)
Q Consensus 801 ~~g~~p~~~~~~~l~~~~~~~G 822 (856)
. .+|..+-...+.++..-|
T Consensus 657 ~---D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 657 K---DPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp T---CSSHHHHHHHHHHHHHHS
T ss_pred c---CCCHHHHHHHHHHHHHHh
Confidence 4 556666555555555555
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.01 Score=49.70 Aligned_cols=98 Identities=10% Similarity=0.030 Sum_probs=72.3
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHH
Q 003020 715 SERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEE---ATRIAKQMRESG-LISDLLSYNNVLGLYAVDGRFK 790 (856)
Q Consensus 715 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~ 790 (856)
........+.+.|.+....++++..+-..+++++.+..+... ++.+++.+.+.+ |.-.....+.++-++.+.|+|+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 334445666777777766677888888888999988887666 888888887765 2213467788888999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 791 DVIGTFKDMVNAAIQPDDFTFKSL 814 (856)
Q Consensus 791 ~A~~~~~~~~~~g~~p~~~~~~~l 814 (856)
+|.+.++.+++ +.|+..--..|
T Consensus 92 ~A~~~~~~lL~--~eP~n~QA~~L 113 (126)
T 1nzn_A 92 KALKYVRGLLQ--TEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHHHH--hCCCCHHHHHH
Confidence 99999999988 47765443333
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.016 Score=50.54 Aligned_cols=85 Identities=11% Similarity=0.055 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 685 LKEAQETYKLLRSLEASPDVYTSNCMIDLYSERS---MVRQAEEIFEIMKKKG-D-ANEFTYAMMLIMYKRNGRFEEATR 759 (856)
Q Consensus 685 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~ 759 (856)
...+.+-|.+..+.+. ++..+...+..++++.+ +.++++.+++.+.+.. | .+...+..|+-+|.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3455566666555544 66777667777787777 6668888888888776 3 245677788888888888888888
Q ss_pred HHHHHHHcCCC
Q 003020 760 IAKQMRESGLI 770 (856)
Q Consensus 760 ~~~~~~~~~~~ 770 (856)
.++++++..|.
T Consensus 93 y~~~lL~ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHhcCCC
Confidence 88888888775
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.48 E-value=1.9 Score=49.72 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=16.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHH
Q 003020 394 YNILIFLHAKNDKISMASRYFWKMKE 419 (856)
Q Consensus 394 ~~~li~~~~~~g~~~~A~~~~~~m~~ 419 (856)
|..++.++.+.++.+.+.++|.++.+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555666677777777776653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.27 Score=57.61 Aligned_cols=98 Identities=18% Similarity=0.181 Sum_probs=55.5
Q ss_pred HccCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 003020 540 GMGRNYDKACN-LFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMA 618 (856)
Q Consensus 540 ~~~g~~~~A~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 618 (856)
...+++++|.+ ++..+ |+......++..+.+.|.++.|.++.+. .. .-.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHH
Confidence 34667777765 44211 1122235566666677777776655421 11 112234556777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 619 EEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAME 661 (856)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 661 (856)
.++.+.+ .+...|..+...+.+.|+++.|..+|.++.
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 7664332 356677777777777777777777776653
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0005 Score=71.00 Aligned_cols=214 Identities=11% Similarity=0.116 Sum_probs=156.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003020 321 SYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFL 400 (856)
Q Consensus 321 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 400 (856)
+..|..|..+....+++.+|++.|-+. -|+..|..++.+..+.|.+++-...+....+. ..+...=+.|+.+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 457889999999999888887766432 36667888999999999999998888877654 3455566788999
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcC--------------------CCCCC
Q 003020 401 HAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGG--------------------GLEID 460 (856)
Q Consensus 401 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------------------~~~p~ 460 (856)
|++.+++.+-.+++ . .|+..-...+..-|...|.++.|.-+|..+..- .-..+
T Consensus 126 yAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99998876543332 1 366666667777777777777777666554210 11246
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 003020 461 EYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYG 540 (856)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 540 (856)
+.||..+..+|...+.+.-|...--.+. ..++-...++..|...|.+++-+.+++............|+-|.-.|+
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniI----vhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYs 274 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 274 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHH----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhc----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 7789999999999998877755544443 233344567888999999999999999999888888999999998888
Q ss_pred ccCCHHHHHHHHHH
Q 003020 541 MGRNYDKACNLFDS 554 (856)
Q Consensus 541 ~~g~~~~A~~~~~~ 554 (856)
+- ++++..+.++.
T Consensus 275 KY-~PeKlmEHlkl 287 (624)
T 3lvg_A 275 KF-KPQKMREHLEL 287 (624)
T ss_dssp SS-CTTHHHHHHTT
T ss_pred hc-CHHHHHHHHHH
Confidence 76 34544444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.05 Score=52.94 Aligned_cols=110 Identities=10% Similarity=-0.041 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcC-CCHH
Q 003020 173 SWERALEIFEWFKRQECHELNVIHYNIMLRTLGK-----ARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKG-GLKE 246 (856)
Q Consensus 173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~ 246 (856)
....|...++++.+.++.-.+...|..++..|.+ .|+.++|+++|++.++.++.-+..++......++.. |+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4567899999999876333346789999999998 499999999999999976543588999999999885 9999
Q ss_pred HHHHHHHHHHhCCCC--ccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003020 247 EAVCWLERMNEGGME--PDEVTMGIVVQMYKKAGEFQKAEEFFKKW 290 (856)
Q Consensus 247 ~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 290 (856)
+|...+++++...+. |+....+.+ .-++|..+++++
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~ 295 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHh
Confidence 999999999998766 554444433 234555555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.19 Score=59.09 Aligned_cols=102 Identities=11% Similarity=0.004 Sum_probs=63.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 003020 325 NTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKN 404 (856)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 404 (856)
..++..+.+.|.+++|+++.+... . -.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~---------~---~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD---------Q---KFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH---------H---HHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc---------h---heehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 666777777888888876653211 1 122334568888887775442 3667888888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003020 405 DKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMD 453 (856)
Q Consensus 405 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 453 (856)
|+++.|.+.|.++.. |..+...+...|+.+...++-+...
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888877642 3344444555566555444444333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.13 E-value=1.2 Score=37.19 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=80.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003020 610 MKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQ 689 (856)
Q Consensus 610 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 689 (856)
.-.|..++..++..+..+. .+..-+|.+|--....-+-+-..+.++.+-+. + |. ...|......
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--Di----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--Cc----------HhhhcHHHHH
Confidence 3346666666666666652 35555555555555544555555555544321 0 10 1234444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003020 690 ETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 690 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 769 (856)
..|-.+ ..+.......++.+..+|+-++-.+++..+....++++.....++.+|.+.|+..+|.+++.++-+.|.
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 443331 123344455666677777777777777776655677777777777777777777777777777777775
Q ss_pred C
Q 003020 770 I 770 (856)
Q Consensus 770 ~ 770 (856)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.85 Score=40.78 Aligned_cols=101 Identities=19% Similarity=0.212 Sum_probs=67.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003020 643 AFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQ 722 (856)
Q Consensus 643 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 722 (856)
...+.|+++.|.++.+++ .+...|..|++.....|+++-|.+.|++... +..+.-.|...|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345678888888877654 3677888888888888888888888877543 3344555666777776
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003020 723 AEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQ 763 (856)
Q Consensus 723 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 763 (856)
-.++-+.....+. ++.....+...|+++++++++.+
T Consensus 79 L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666655554432 23334445567888888877654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.85 Score=40.78 Aligned_cols=128 Identities=13% Similarity=0.143 Sum_probs=76.7
Q ss_pred HHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003020 273 MYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSLSSYTYNTLIDTYGKAGQLKEASETFAQMLREGI 352 (856)
Q Consensus 273 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 352 (856)
.....|+++.|.++.+.+. +...|..|.......|+++-|.+.|.+..
T Consensus 14 LAL~lg~l~~A~e~a~~l~----------------------------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---- 61 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLN----------------------------DSITWERLIQEALAQGNASLAEMIYQTQH---- 61 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHC----------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHTT----
T ss_pred HHHhcCCHHHHHHHHHHhC----------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHhC----
Confidence 3456778888888776653 35678888888888888888888887753
Q ss_pred CCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHH
Q 003020 353 VPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTL 432 (856)
Q Consensus 353 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 432 (856)
| +..+.-.|.-.|+.+...++-+.....| -++.....+.-.|+++++.++|.+.-. -|..
T Consensus 62 --D---~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------ 121 (177)
T 3mkq_B 62 --S---FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------ 121 (177)
T ss_dssp --C---HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------
T ss_pred --C---HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------
Confidence 2 3344444555677776666665555443 133444455567777777777754432 1111
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 003020 433 LYAYSIRRMVCEAEELISEM 452 (856)
Q Consensus 433 l~~~~~~g~~~~A~~~~~~~ 452 (856)
.......|..+.|.++.+++
T Consensus 122 ~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 122 YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHcCcHHHHHHHHHHh
Confidence 11112245566666666555
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.26 Score=42.21 Aligned_cols=64 Identities=13% Similarity=0.177 Sum_probs=43.8
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003020 716 ERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVL 780 (856)
Q Consensus 716 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 780 (856)
..++.++|.++|+.+.+....=..+|...+.--.++|+.+.|.+++.+++..++. +...+...+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~ 135 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIAL 135 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHH
Confidence 3467777888887776554333667777777777788888888888888888777 334444433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.36 Score=40.32 Aligned_cols=90 Identities=9% Similarity=-0.003 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCCHHHH
Q 003020 683 GYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQ---AEEIFEIMKKKGDA--NEFTYAMMLIMYKRNGRFEEA 757 (856)
Q Consensus 683 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 757 (856)
.....+.+-|......+. ++..+-..+..++.+..+... ++.+++.+...+.| .......|+-++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 334445555555544343 555555566667766665544 77778777776522 344667778888888888888
Q ss_pred HHHHHHHHHcCCCCCHH
Q 003020 758 TRIAKQMRESGLISDLL 774 (856)
Q Consensus 758 ~~~~~~~~~~~~~p~~~ 774 (856)
.+.++.+++..|. +..
T Consensus 94 ~~~~~~lL~~eP~-n~Q 109 (126)
T 1nzn_A 94 LKYVRGLLQTEPQ-NNQ 109 (126)
T ss_dssp HHHHHHHHHHCTT-CHH
T ss_pred HHHHHHHHHhCCC-CHH
Confidence 8888888888776 443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.17 Score=57.00 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=41.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 745 LIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDM 799 (856)
Q Consensus 745 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 799 (856)
+.-|...|+++-|+++.+++...-|. +..+|..|+.+|...|+|+.|+-.+.-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34455677888888888888887776 7788888888888888888888777665
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.26 E-value=0.38 Score=40.35 Aligned_cols=80 Identities=5% Similarity=-0.107 Sum_probs=60.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 733 KGDANEFTYAMMLIMYKRNGRF---EEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 733 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
.+.+++.+-..+++++.+..+. .+++.+++.+.+.++.-....+..++-++.+.|++++|.+..+.+++ +.|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 3567778888888888887754 46888888888776542457778888888899999999988888888 477765
Q ss_pred HHHHH
Q 003020 810 TFKSL 814 (856)
Q Consensus 810 ~~~~l 814 (856)
-...|
T Consensus 113 QA~~L 117 (134)
T 3o48_A 113 QVGAL 117 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.11 E-value=0.52 Score=40.43 Aligned_cols=61 Identities=7% Similarity=-0.047 Sum_probs=29.9
Q ss_pred CChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHH
Q 003020 475 GMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVM 535 (856)
Q Consensus 475 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 535 (856)
++.++|+++|+.+...+..-...|...+..-.++|++..|.+++..+....+.+...+.+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 4555555555555433332344444445555555555555555555555444444443333
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.04 E-value=1 Score=38.29 Aligned_cols=78 Identities=5% Similarity=-0.098 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003020 735 DANEFTYAMMLIMYKRNGRF---EEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTF 811 (856)
Q Consensus 735 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 811 (856)
.++..+-..+++++.+..+. .+++.+++.+...++.-.....+.++-++.+.|+|++|.++.+.+++ +.|+..--
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHH
Confidence 56777777888888877754 46788888888776653446777888888888888888888888888 47766444
Q ss_pred HHH
Q 003020 812 KSL 814 (856)
Q Consensus 812 ~~l 814 (856)
..|
T Consensus 114 ~~L 116 (144)
T 1y8m_A 114 GAL 116 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.32 E-value=5.4 Score=42.31 Aligned_cols=151 Identities=12% Similarity=0.074 Sum_probs=80.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCH----H
Q 003020 672 YNSLIKLYTKVGYLKEAQETYKLLRS--LEASPD---VYTSNCMIDLYSERSMVRQAEEIFEIMKKKG---DANE----F 739 (856)
Q Consensus 672 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~ 739 (856)
...|...+...|++.+|..+++.+.. .+..+. ...+..-++.|...+++..|..+++++.... ++++ .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 34566777777888888777776654 222222 2355566677777788888877777764311 2222 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 740 TYAMMLIMYKRNGRFEEATRIAKQMRESG-LISDLLSY----NNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSL 814 (856)
Q Consensus 740 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 814 (856)
.+..++..+...++|.+|-+.|.++.+.. ...|+..+ ..++.+..-.+..++--.+..+......-++...+..|
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 45566777777788888777777775431 11122222 22222222222222222233333222223455567777
Q ss_pred HHHHHHcC
Q 003020 815 GAVLMKCG 822 (856)
Q Consensus 815 ~~~~~~~G 822 (856)
+.+|...-
T Consensus 300 ~k~f~~~~ 307 (445)
T 4b4t_P 300 VKLFTTNE 307 (445)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhch
Confidence 77776554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.11 E-value=3.4 Score=34.60 Aligned_cols=138 Identities=9% Similarity=0.038 Sum_probs=59.9
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCCc
Q 003020 240 SKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGSL 319 (856)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (856)
.-.|..++..++..+..... +..-+|-++--....-+-+-..++++.+.+.-++..-+++.+.+.-.-.. ..
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~-----n~ 89 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN-----NT 89 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT-----TC
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh-----cc
Confidence 34566666666666665532 33334444433333444444444444443322111111111111000000 01
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 003020 320 SSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELH 386 (856)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 386 (856)
+..-.+..++.+..+|+-++-.+++..++. +.+|++.....+..+|.+.|+..+|.+++.++-+.|
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 223344445555555555555555555433 234445555555555555555555555555555544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.61 Score=48.73 Aligned_cols=74 Identities=11% Similarity=0.079 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHHH
Q 003020 742 AMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN-----AAIQPDDFTFKSLGA 816 (856)
Q Consensus 742 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~l~~ 816 (856)
..++.++...|++++|+..+.++....|- +...|..++.+|.+.|+..+|++.|+++.+ .|+.|...+-...-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34566677778888888888887777776 777788888888888888888888777654 477887776444433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.33 E-value=0.64 Score=40.78 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003020 772 DLLSYNNVLGLYAVDGRFKDVIGTFKDMV 800 (856)
Q Consensus 772 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 800 (856)
+...-..++.+|.+.|++++|+.+++.+.
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 34566779999999999999999988653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.90 E-value=1.4 Score=46.06 Aligned_cols=77 Identities=8% Similarity=0.013 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCCCHHHHHHHHH
Q 003020 707 SNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMR-----ESGLISDLLSYNNVLG 781 (856)
Q Consensus 707 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~l~~ 781 (856)
...++..+...|++++|+..+..+....|.+...|..++.++.+.|+..+|++.|+++. +.|+.|++.+-...-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34567778899999999999999999999999999999999999999999999999875 4688888766544433
Q ss_pred HH
Q 003020 782 LY 783 (856)
Q Consensus 782 ~~ 783 (856)
.+
T Consensus 254 il 255 (388)
T 2ff4_A 254 IL 255 (388)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.02 E-value=22 Score=37.65 Aligned_cols=96 Identities=10% Similarity=0.191 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCH--
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKG--DAN----EFTYAMMLIMYKRNGRFEEATRIAKQMRE----SGLISDL-- 773 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~-- 773 (856)
....|...+...|++.+|..++..+.... ..+ ...+...++.|...+++..|..+++++.. ..+.|+.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 34567889999999999999999886422 222 34677788899999999999999998753 2222222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 774 LSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 774 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
..+...+..+...++|.+|...|.++.+
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4567788899999999999999988866
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.83 E-value=5.5 Score=45.00 Aligned_cols=49 Identities=8% Similarity=-0.061 Sum_probs=26.5
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003020 715 SERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQ 763 (856)
Q Consensus 715 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 763 (856)
...|+++-|+++.+++....|.+..+|..|+.+|...|+++.|+-.++-
T Consensus 348 l~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 3445555555555555555555555555555555555555555555443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.16 E-value=13 Score=45.10 Aligned_cols=184 Identities=11% Similarity=0.055 Sum_probs=113.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 003020 639 VLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERS 718 (856)
Q Consensus 639 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 718 (856)
.++..+...+.++-+.++..- .+.++..--.++.++...|++++|.+.|++... ++..+.... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~ 880 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------A 880 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------S
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------h
Confidence 355556666666666554322 233444445566777777788888777766432 121111000 0
Q ss_pred CHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHH
Q 003020 719 MVRQAEEIFEIMKKKG---DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDL----LSYNNVLGLYAVDGRFKD 791 (856)
Q Consensus 719 ~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~ 791 (856)
.... +..+.... ..-+.-|..++..+.+.|.++.++++.+.+++.....+. ..|..+.+.+...|+|++
T Consensus 881 ~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 881 VLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred hhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 0000 11111111 223456788888999999999999999998876543233 257888899999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-HHHHHhhcchhhHHHHHHHHhh
Q 003020 792 VIGTFKDMVNAAIQPDDFTFKSLGAVLMKCG-LELTRKKNAQSGLQAWMSTLSS 844 (856)
Q Consensus 792 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~G-~~~~~~~~~~~~~~~~~~~~~~ 844 (856)
|...+-.+.+...+ ...+..|+..++..| .+.+...++..-.+.--++|.+
T Consensus 957 Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~ 1008 (1139)
T 4fhn_B 957 AHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLER 1008 (1139)
T ss_dssp GGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHH
Confidence 99999888775443 456888888888888 6666666655444444444443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.63 E-value=26 Score=34.61 Aligned_cols=27 Identities=26% Similarity=0.063 Sum_probs=17.3
Q ss_pred CCchhhHHHHHHHhhcCCHHHHHHHHH
Q 003020 493 MSSEGYSANIDGYGERGHVLEAERAFI 519 (856)
Q Consensus 493 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 519 (856)
.+++....++..|.+.|++.+|+.-|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 345556666667777777777766654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.49 E-value=8 Score=32.42 Aligned_cols=70 Identities=11% Similarity=0.033 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 701 SPDVYTSNCMIDLYSERSM---VRQAEEIFEIMKKKGDA-NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 701 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+|. ....+..|+-++.+.|++++|.+..+.+++..|.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3555555555556655543 44677777777766543 3446667777778888888888888888777665
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=85.91 E-value=46 Score=36.72 Aligned_cols=136 Identities=10% Similarity=0.015 Sum_probs=69.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 003020 332 GKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMAS 411 (856)
Q Consensus 332 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 411 (856)
.+.|+++.+..+...+... .-.....|..+...+ .....+++...+.+.. +.+.....-+..+..+.+.+++...+
T Consensus 17 ~~~~~~~~~~~l~~~l~~~-pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~--~~p~~~~Lr~~~l~~l~~~~~w~~~l 92 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLKDY-PLYPYLEYRQITDDL-MNQPAVTVTNFVRANP--TLPPARTLQSRFVNELARREDWRGLL 92 (618)
T ss_dssp HHTTCHHHHHHHSGGGTTS-TTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHhhcCC-CcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCC--CChhHHHHHHHHHHHHHhCCCHHHHH
Confidence 3567777777766655322 111222444333222 1224555555554422 11222233344456666777777666
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCCh
Q 003020 412 RYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGML 477 (856)
Q Consensus 412 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 477 (856)
..+.. .+.+...-.....+....|+..+|......+=..|.. .+.....++..+.+.|.+
T Consensus 93 ~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 93 AFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCS
T ss_pred HhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCC
Confidence 54432 2334444455666777788887777777776554422 344445556666655544
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=85.57 E-value=35 Score=35.07 Aligned_cols=58 Identities=19% Similarity=0.110 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh--CCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 674 SLIKLYTKVGYLKEAQETYKLLRS--LEASPD---VYTSNCMIDLYSERSMVRQAEEIFEIMK 731 (856)
Q Consensus 674 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 731 (856)
-++..|...|++.+|.+++..+.+ ...... ...+..-+..|...+++.++...+..+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344555555555555555554444 111111 1123333444555555555555554443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.47 E-value=4.4 Score=35.56 Aligned_cols=129 Identities=9% Similarity=-0.063 Sum_probs=70.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHH-HHHH
Q 003020 640 LINAFADVGNVKQAQSYFDAMESA-GLPPN-------AVIYNSLIKLYTKVGYLKEAQETYKLLRSL-EASPDVY-TSNC 709 (856)
Q Consensus 640 l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~-~~~~ 709 (856)
-+..+...|.++.|.-+.+.+... +..|+ ..++..+++++...|++.+|...|++.++. ..-+... ....
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 345566778888888777765431 11233 135667778888888888888888876551 1111111 1111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003020 710 MIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGL 782 (856)
Q Consensus 710 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 782 (856)
+. ....... . . ..+.+...-.-+..+|.+.|++++|+.+++.+-...- ++..--.|++.
T Consensus 106 ~~----~~ss~p~------s-~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R--t~kvnm~LakL 164 (167)
T 3ffl_A 106 TG----NSASTPQ------S-Q-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR--TPKINMLLANL 164 (167)
T ss_dssp -----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC--CHHHHHHHHHH
T ss_pred cc----ccCCCcc------c-c-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc--CHHHHHHHHHH
Confidence 10 0000000 0 0 0133455667789999999999999999886533221 34444444443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=83.97 E-value=36 Score=33.89 Aligned_cols=82 Identities=13% Similarity=0.075 Sum_probs=45.8
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 003020 526 KLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAV 605 (856)
Q Consensus 526 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 605 (856)
..++.....+...|.+.+++.+|...|- .|-.+...++..++--+...+...++ +...-.+
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRa- 193 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARA- 193 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHH-
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHH-
Confidence 4457777778888888888888877762 13333345665555544444332221 1111222
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 003020 606 ISSYMKLGQLEMAEEVYKDMI 626 (856)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~ 626 (856)
+-.|.-.++...|..+|+...
T Consensus 194 VL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 194 VLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 223555677787777666554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.80 E-value=6.6 Score=37.59 Aligned_cols=53 Identities=23% Similarity=0.218 Sum_probs=35.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003020 644 FADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRS 697 (856)
Q Consensus 644 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 697 (856)
..+.|+.++|++....-++.. |.|...-..++..+|-.|++++|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445666777777666666654 55666666667777777777777776666665
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=82.79 E-value=3.7 Score=39.33 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=62.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHcCCH
Q 003020 678 LYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEF---TYAMMLIMYKRNGRF 754 (856)
Q Consensus 678 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~ 754 (856)
...+.|.+++|++....-++..+ -|...-..++..+|-.|+++.|..-++.+.+..|.... .|..++
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI--------- 75 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV--------- 75 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH---------
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH---------
Confidence 34566777777777766655432 45555566777777777777777777777766544332 222222
Q ss_pred HHHHHHHHHHHHcCCCC----CHHHH-HHHHHHH--HhcCCHHHHHHHHHHHHH
Q 003020 755 EEATRIAKQMRESGLIS----DLLSY-NNVLGLY--AVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 755 ~~A~~~~~~~~~~~~~p----~~~~~-~~l~~~~--~~~g~~~~A~~~~~~~~~ 801 (856)
.|+..-.++..-+-.| .+..| ..++.++ ...|+.++|..+..++.+
T Consensus 76 -~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 76 -KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp -HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 2223333333322221 12223 3333333 355788888877777766
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.39 E-value=12 Score=39.51 Aligned_cols=61 Identities=15% Similarity=0.065 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSL--EASPDVYTSNCMIDLYSERSMVRQAEEIFEIMK 731 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 731 (856)
+...+++.|.+.|++++|.+.|.++... +...-...+-..++.+...+++..+...++++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4556667777777777777777776652 222223455555666666666666666666554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=81.88 E-value=30 Score=41.90 Aligned_cols=51 Identities=20% Similarity=0.094 Sum_probs=25.9
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003020 570 LIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDM 625 (856)
Q Consensus 570 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (856)
++..+...+.++.+.++... .+.++...-.+..+|...|++++|...|.+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44445555555555443322 1223333344555566666666666666554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.13 E-value=13 Score=29.13 Aligned_cols=78 Identities=18% Similarity=0.130 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcChhhHHHHHHHHHcCCCHHHHHHHH
Q 003020 173 SWERALEIFEWFKRQECHELNVIHYNIMLRTLGKARKWSYVQSLWDEMSVKGIVPINSTYGTLIDVCSKGGLKEEAVCWL 252 (856)
Q Consensus 173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 252 (856)
+.++|..+-+|....+. ...+--.-+..+..+|+|++|..+.+.. +.||...|..+- -.+.|..+++...+
T Consensus 22 ~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHH
Confidence 78999999999997652 2233333345677899999999887543 478998887764 45778899999998
Q ss_pred HHHHhCC
Q 003020 253 ERMNEGG 259 (856)
Q Consensus 253 ~~~~~~~ 259 (856)
.++-..|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 8887776
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 856 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-10 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.1 bits (144), Expect = 5e-10
Identities = 53/389 (13%), Positives = 133/389 (34%), Gaps = 28/389 (7%)
Query: 444 EAEELISEMDGGGLEIDEYTQSALTRM---YIEAGMLEKSWLWFRRFHLAGDMSSEGYSA 500
AE ++ + L + + + L++S + + +
Sbjct: 17 AAERHCMQL----WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTL-------AIKQNPL 65
Query: 501 NIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGA 560
+ Y G+V + E + + + + Y A +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 561 VPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISS-----YMKLGQL 615
+ + + +L R + P AV S + G++
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 616 EMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSL 675
+A ++ + + + Y L N + +A + + S P +AV++ +L
Sbjct: 186 WLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNL 243
Query: 676 IKLYTKVGYLKEAQETYKLLRSLEASPDVYTS-NCMIDLYSERSMVRQAEEIFEIMKKKG 734
+Y + G + A +TY+ R++E P + + + E+ V +AE+ + +
Sbjct: 244 ACVYYEQGLIDLAIDTYR--RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Query: 735 DANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIG 794
+ + + + + G EEA R+ ++ E +++N+ + G+ ++ +
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALM 360
Query: 795 TFKDMVNAAIQPDDF-TFKSLGAVLMKCG 822
+K+ + I P + ++G L +
Sbjct: 361 HYKEAI--RISPTFADAYSNMGNTLKEMQ 387
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 856 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.7 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.65 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.39 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.35 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.26 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.25 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.25 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.22 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.2 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.2 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.14 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.95 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.94 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.89 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.86 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.82 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.81 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.77 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.74 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.73 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.72 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.71 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.69 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.68 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.66 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.54 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.49 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.48 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.47 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.47 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.47 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.42 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.41 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.4 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.37 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.34 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.29 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.23 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.21 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.16 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.15 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.9 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.89 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.89 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.81 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.78 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.74 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.52 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.51 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.28 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.88 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.15 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.96 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.85 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.96 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.68 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.63 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.02 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.3e-23 Score=224.44 Aligned_cols=380 Identities=16% Similarity=0.130 Sum_probs=259.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHH
Q 003020 434 YAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLE 513 (856)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 513 (856)
..+.+.|++++|++.|+++++..+ -+...+..++.+|...|++++|...|+++...+|.+..++..++..|...|++++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccc
Confidence 334455555555555555554321 1344555555555556666666666666665566666666666666666666666
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 003020 514 AERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEA 593 (856)
Q Consensus 514 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 593 (856)
|+..+.......+.....+..........+....+............ ................+....+...+......
T Consensus 86 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHhhcc
Confidence 66666666666666665555555555555555555555555444322 23344444555566666777777766666654
Q ss_pred CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003020 594 GLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYN 673 (856)
Q Consensus 594 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 673 (856)
. +.+...+..+...+...|++++|...++++++.. +.+..+|..+...+...|++++|+..+++....+ +.+...+.
T Consensus 165 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 3 3345566777777777888888888888877654 2356677778888888888888888888877654 55667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 003020 674 SLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGR 753 (856)
Q Consensus 674 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 753 (856)
.++..+.+.|++++|+..|+++.+... .+...+..++.++...|++++|++.++.+....|.+...+..++.++...|+
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCC
Confidence 788888888888888888888777432 3456777778888888888888888888887778888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcC
Q 003020 754 FEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDD-FTFKSLGAVLMKCG 822 (856)
Q Consensus 754 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~G 822 (856)
+++|++.++++++..|. ++.++..++.+|...|++++|+..|+++++ +.|+. ..|..++.+|.+.|
T Consensus 321 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 321 IEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence 88888888888887776 777888888888888888888888888877 46653 45777777777655
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.5e-23 Score=222.35 Aligned_cols=384 Identities=13% Similarity=0.051 Sum_probs=269.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 003020 362 MIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRM 441 (856)
Q Consensus 362 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 441 (856)
+...+.+.|++++|.+.++++.+.. |.+..++..+..+|.+.|++++|+..|++..+.. +.+..+|..+..+|...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 3444556666666666666666543 3455566666666666666666666666666543 2345556666666666666
Q ss_pred HHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHH
Q 003020 442 VCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICC 521 (856)
Q Consensus 442 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 521 (856)
+++|+..+..+.+.... +..............+....+........
T Consensus 83 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 128 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSAL--------------------------------- 128 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHH---------------------------------
T ss_pred ccccccccccccccccc-ccccccccccccccccccccccccccccc---------------------------------
Confidence 66666666666554322 22333333333333344433333333333
Q ss_pred hcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHh
Q 003020 522 QEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIP 601 (856)
Q Consensus 522 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 601 (856)
....................+....+...+....... +.+...+..+...+...|+++.|...+.+.++.. +.+...
T Consensus 129 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T d1w3ba_ 129 -QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp -HHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred -ccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHH
Confidence 3333334444444555555555666666555555432 2244555566666666666667766666666543 335566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003020 602 YCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTK 681 (856)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 681 (856)
+..+...+...|++++|+..+++....+ +.+...+..+...+.+.|++++|+..|+++.+.. |.+..++..++.++..
T Consensus 206 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 283 (388)
T d1w3ba_ 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHH
T ss_pred HHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 7778888888888899988888888764 4467788888888999999999999999988874 5677889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003020 682 VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIA 761 (856)
Q Consensus 682 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 761 (856)
.|++++|++.++...... +.+...+..++.++...|++++|++.++++.+..|.++.++..++.+|...|++++|++.|
T Consensus 284 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 362 (388)
T d1w3ba_ 284 KGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp HSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999887743 3567788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003020 762 KQMRESGLISDLLSYNNVLGLYAVDGR 788 (856)
Q Consensus 762 ~~~~~~~~~p~~~~~~~l~~~~~~~g~ 788 (856)
+++++..|. ++.+|..++.+|.+.|+
T Consensus 363 ~~al~l~P~-~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 363 KEAIRISPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 999999887 88999999999998875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=7.6e-15 Score=151.39 Aligned_cols=262 Identities=14% Similarity=0.064 Sum_probs=175.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 003020 534 VMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLG 613 (856)
Q Consensus 534 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 613 (856)
..+..+.+.|++++|+..|+++++.. +-+..+|..+..++...|++++|...+.++++.. +.+...+..++.+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45666677777777777777777652 2245566666677777777777777777766653 234555666666666777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003020 614 QLEMAEEVYKDMIRFNVEPDVVVY-GVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETY 692 (856)
Q Consensus 614 ~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 692 (856)
++++|.+.++++.... |+.... ....... ...+.......+..+...+.+.+|.+.|
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHH
Confidence 7777777776666542 221100 0000000 0000011111222334556677888888
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003020 693 KLLRSLE-ASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS 771 (856)
Q Consensus 693 ~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 771 (856)
+++.+.. ..++...+..++..+...|++++|+..++++....|.++.+|..++.+|...|++++|++.++++++..|.
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~- 238 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG- 238 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhc-
Confidence 8777633 23456777888888889999999999999998888888999999999999999999999999999988877
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------------HHHHHHHHHHHHHcC
Q 003020 772 DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPD------------DFTFKSLGAVLMKCG 822 (856)
Q Consensus 772 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~------------~~~~~~l~~~~~~~G 822 (856)
++.+|..++.+|...|++++|+..|+++++. .|+ ...|..+..++...|
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~~~~l~~al~~~~ 299 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLG 299 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcChhhhhhhHHHHHHHHHHHHHHHHHcC
Confidence 7888999999999999999999999988872 221 223556666666666
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.6e-14 Score=147.26 Aligned_cols=275 Identities=9% Similarity=-0.043 Sum_probs=195.3
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003020 498 YSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAGA 577 (856)
Q Consensus 498 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 577 (856)
....+..+.+.|++++|+..|+++.+..|.++.+|..++.++...|++++|+..|++..+.. +-+...+..++..+...
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 34556667777777777777777777777777777777777878888888888887777642 22566677777778888
Q ss_pred CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003020 578 DLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYF 657 (856)
Q Consensus 578 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 657 (856)
|++++|.+.++.+.... |+............. ..+.......+..+...+.+.+|...|
T Consensus 101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHH
Confidence 88888888887777643 221111000000000 001111111222334456677888888
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 003020 658 DAMESAG-LPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA 736 (856)
Q Consensus 658 ~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 736 (856)
.+..+.. -.++..++..++..+...|++++|+..|++...... .+...|..++.++...|++++|++.++++.+..|.
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 238 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 238 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHhhc
Confidence 8876643 234677888899999999999999999999887542 35778889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhcCCHHHHHHH
Q 003020 737 NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS----------DLLSYNNVLGLYAVDGRFKDVIGT 795 (856)
Q Consensus 737 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~A~~~ 795 (856)
++.+|..++.+|.+.|++++|++.|+++++..|.- ....|..+..++...|+.+.+...
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999865441 123567777888888887765443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=6.6e-11 Score=119.92 Aligned_cols=214 Identities=9% Similarity=0.020 Sum_probs=118.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 566 SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLG-QLEMAEEVYKDMIRFNVEPDVVVYGVLINAF 644 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 644 (856)
.++.+...+.+.+.+++|+..++++++.. +-+..+|+....++...| ++++|+..++++++.. +-+..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 44455555556666666666666666643 223444555555555554 3566666666665543 22555666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-----
Q 003020 645 ADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSM----- 719 (856)
Q Consensus 645 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----- 719 (856)
.+.|++++|+..++++++.. |.+...|..++..+...|++++|++.|+++++.++ .+...|+.+..++...+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchhh
Confidence 66666666666666666543 44556666666666666666666666666665332 234455555554444333
Q ss_pred -HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 003020 720 -VRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-DLLSYNNVLGLYA 784 (856)
Q Consensus 720 -~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 784 (856)
+++|++.+.++++..|.+..+|..++..+... ..+++.+.++++.+..+.+ ++..+..++.+|.
T Consensus 201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 45566666666666666666666555554333 3455556666665554443 2334444555443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=7.3e-11 Score=119.58 Aligned_cols=216 Identities=10% Similarity=0.074 Sum_probs=170.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003020 601 PYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVG-NVKQAQSYFDAMESAGLPPNAVIYNSLIKLY 679 (856)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 679 (856)
.++.+...+.+.+.+++|+..++++++.++ -+..+|+....++...| ++++|+..+++.++.. |-+..+|..++..+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 456666677788889999999999988753 37778888888888766 4899999999988765 66788899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC------
Q 003020 680 TKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGR------ 753 (856)
Q Consensus 680 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 753 (856)
.+.|++++|++.++++++... .+...|..++.++...|++++|++.++++++.+|.+..+|+.++.++.+.++
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhh
Confidence 999999999999998888542 4577888888889999999999999999999889999999888888877665
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHc
Q 003020 754 FEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQP-DDFTFKSLGAVLMKC 821 (856)
Q Consensus 754 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 821 (856)
+++|++.+.++++..|. +...|+.++..+... ..+++.+.+++.++....+ +...+..+...+...
T Consensus 202 ~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~ 268 (315)
T d2h6fa1 202 LEREVQYTLEMIKLVPH-NESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 268 (315)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHhCCC-chHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence 57888999999998887 888888888775544 4678888888887743222 344566666666554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=6.8e-10 Score=115.05 Aligned_cols=266 Identities=13% Similarity=0.033 Sum_probs=132.8
Q ss_pred HHHHhhcCCHHHHHHHHHHHhcCCCCc-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHH
Q 003020 502 IDGYGERGHVLEAERAFICCQEGKKLT-----VLVFNVMVKAYGMGRNYDKACNLFDSMTSHGA-VPD----KCSYNSLI 571 (856)
Q Consensus 502 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll 571 (856)
+..+...|++++|++.++++....|.+ ..++..++.++...|++++|+..|++..+... .++ ..++..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 344445555555555555544433322 23455566666666777777766666544210 011 12334444
Q ss_pred HHHHcCCChHHHHHHHHHHHHc----CCCCC---hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHH
Q 003020 572 QILAGADLPHMAKRYLRKMQEA----GLVSD---CIPYCAVISSYMKLGQLEMAEEVYKDMIRFNV----EPDVVVYGVL 640 (856)
Q Consensus 572 ~~~~~~~~~~~A~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l 640 (856)
..+...|++..+...+...... ..... ...+..+...+...|+++.+...+........ ......+...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 5555566666666655554331 11111 11234445556666666666666666554211 1123344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHH
Q 003020 641 INAFADVGNVKQAQSYFDAMESA--GLPPN----AVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASP---DVYTSNCMI 711 (856)
Q Consensus 641 ~~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~ 711 (856)
...+...++..++...+.+.... ..... ...+..+...+...|++++|...++...+..... ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 55555566666666655554321 11111 1234444555556666666666665554422111 123344455
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 712 DLYSERSMVRQAEEIFEIMKKKG------DANEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 712 ~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
.++...|++++|...++++.... +....++..++.+|...|++++|++.++++++.
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56666666666666666554221 223345556666666666666666666665543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=6.7e-11 Score=116.72 Aligned_cols=201 Identities=14% Similarity=0.052 Sum_probs=127.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003020 601 PYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYT 680 (856)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 680 (856)
++..+..+|.+.|++++|+..|++.++.. +.+..+|+.+..++.+.|++++|+..|+++.+.. |.+..++..++.++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 45666777888888888888888888764 3367788888888888888888888888887764 445677778888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHH
Q 003020 681 KVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR----NGRFEE 756 (856)
Q Consensus 681 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 756 (856)
..|++++|++.|+...+..+ .+......+...+...+..+.+..+........+.+. .+. ++..+.. .+..+.
T Consensus 117 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~ 193 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW-GWN-IVEFYLGNISEQTLMER 193 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST-HHH-HHHHHTTSSCHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh-hhh-HHHHHHHHHHHHHHHHH
Confidence 88888888888888777432 3344444444455555555555555555554433222 111 1122211 122333
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003020 757 ATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 757 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 809 (856)
+...+.......+. ...+|..++.+|...|++++|+..|++.+.. .|+..
T Consensus 194 ~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~ 243 (259)
T d1xnfa_ 194 LKADATDNTSLAEH-LSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNF 243 (259)
T ss_dssp HHHHCCSHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTC
T ss_pred HHHHHHHhhhcCcc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCH
Confidence 33333333333222 3356777888888888888888888888873 56543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.25 E-value=1.6e-11 Score=126.43 Aligned_cols=170 Identities=5% Similarity=-0.079 Sum_probs=75.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003020 607 SSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLK 686 (856)
Q Consensus 607 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 686 (856)
..+...+.+++|+..++.+++.++ -+..+|+.+..++.+.|++++|...+....+.. |+. ..+...+...+..+
T Consensus 152 ~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~---~~~~~~~~~l~~~~ 225 (334)
T d1dcea1 152 VAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--LKE---LELVQNAFFTDPND 225 (334)
T ss_dssp HHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--HHH---HHHHHHHHHHCSSC
T ss_pred HHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--HHH---HHHHHHHHHhcchh
Confidence 334444555555555555544432 244455555555555555544443333222210 110 11112223334444
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003020 687 EAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRE 766 (856)
Q Consensus 687 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 766 (856)
++...+........ +....+..++..+...+++++|...+.+.....|.+..++..++.++...|++++|++.++++++
T Consensus 226 ~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 226 QSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp SHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45554444444221 22223333444444445555555555555555444555555555555555555555555555555
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 003020 767 SGLISDLLSYNNVLGLYA 784 (856)
Q Consensus 767 ~~~~p~~~~~~~l~~~~~ 784 (856)
.+|. +...|..+...+.
T Consensus 305 ldP~-~~~y~~~L~~~~~ 321 (334)
T d1dcea1 305 VDPM-RAAYLDDLRSKFL 321 (334)
T ss_dssp HCGG-GHHHHHHHHHHHH
T ss_pred HCcc-cHHHHHHHHHHHh
Confidence 5443 3344444444433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=2.1e-09 Score=111.17 Aligned_cols=273 Identities=13% Similarity=0.027 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----h
Q 003020 529 VLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPD----KCSYNSLIQILAGADLPHMAKRYLRKMQEAGLV-SD----C 599 (856)
Q Consensus 529 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~ 599 (856)
..........+...|++++|+.++++.++.....+ ..++..+..++...|++++|...++++.+.... ++ .
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 91 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 91 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 34445556778899999999999999988632222 245777888999999999999999998764211 11 2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC
Q 003020 600 IPYCAVISSYMKLGQLEMAEEVYKDMIRF----NVE--PD-VVVYGVLINAFADVGNVKQAQSYFDAMESA----GLPPN 668 (856)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~ 668 (856)
..+..+...+...|++..|...+.+.... ... +. ...+..+...+...|+++.+...+...... +....
T Consensus 92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (366)
T d1hz4a_ 92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 171 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH
Confidence 34666777888999999999999887642 111 11 235666778889999999999999888653 22233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CH
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSL--EASPD----VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDA----NE 738 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~ 738 (856)
...+......+...|.+.++...+...... ..... ...+..+...+...|++++|...+++.....+. ..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 251 (366)
T d1hz4a_ 172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 251 (366)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHH
Confidence 466777778888999999999998776551 11121 234556677888999999999999988776533 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 739 FTYAMMLIMYKRNGRFEEATRIAKQMRES----GLIS-DLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
..+..++.++...|++++|...+++++.. +..| ...++..++.+|...|++++|++.+++.++
T Consensus 252 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 252 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56778899999999999999999998743 3222 236788999999999999999999999876
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.22 E-value=2.7e-11 Score=124.78 Aligned_cols=264 Identities=7% Similarity=-0.082 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHH----------HHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccC--CH
Q 003020 478 EKSWLWFRRFHLAGDMSSEGYSANID----------GYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGR--NY 545 (856)
Q Consensus 478 ~~a~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~ 545 (856)
++|+.+++++...+|.+..+|..... .+...|.+++|+..|+.+....|.+...|..+..++...+ ++
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~ 125 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccH
Confidence 55555566555555555555543322 2334455778888888888888888888888887776655 47
Q ss_pred HHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 546 DKACNLFDSMTSHGAVPDKCSY-NSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKD 624 (856)
Q Consensus 546 ~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (856)
++|+..+.++.+... ++...+ ......+...+.++.|+..++.+++.. +.+...|..+...+.+.|++++|...+..
T Consensus 126 ~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~ 203 (334)
T d1dcea1 126 ARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (334)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred HHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 888888888887632 244443 445567777888899998888888765 34677788888889999988888766655
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003020 625 MIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDV 704 (856)
Q Consensus 625 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 704 (856)
..+. .|+. ..+...+...+..+++...+....... +++...+..++..+...|++++|...+.+..+..+ .+.
T Consensus 204 ~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~ 276 (334)
T d1dcea1 204 PENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENK-WCL 276 (334)
T ss_dssp CHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH-HHH
T ss_pred hHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc-hHH
Confidence 4432 1111 122334556677788888888887764 55666677778888888999999999988776331 245
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 003020 705 YTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR 750 (856)
Q Consensus 705 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 750 (856)
..+..++.++...|++++|++.++++.+.+|.+...|..|...+.-
T Consensus 277 ~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 277 LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 5778888899999999999999999999988888888888777664
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=2.6e-09 Score=107.91 Aligned_cols=189 Identities=12% Similarity=0.064 Sum_probs=155.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003020 613 GQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETY 692 (856)
Q Consensus 613 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 692 (856)
+..++|..+|++.++...+.+...|..++..+...|++++|..+|+++++........+|...+..+.+.|.+++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45688999999998765566777889899999999999999999999988643333567899999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-
Q 003020 693 KLLRSLEASPDVYTSNCMIDL-YSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI- 770 (856)
Q Consensus 693 ~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 770 (856)
+++++... .+...|...+.. +...|+.+.|..+|+.+....|.++..|...+..+...|+++.|..+|+++++..+.
T Consensus 158 ~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 99988553 233344333333 345689999999999999988999999999999999999999999999999997653
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003020 771 S--DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNA 802 (856)
Q Consensus 771 p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 802 (856)
| ....|...+..-...|+.+.+..+++++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 2357888888888999999999999999873
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=2.2e-10 Score=112.94 Aligned_cols=199 Identities=11% Similarity=-0.003 Sum_probs=118.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003020 566 SYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFA 645 (856)
Q Consensus 566 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 645 (856)
++..+..++.+.|++++|+..|++.++.. +.++.+|..+..+|.+.|++++|+..|+++++..+ .+..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-hhhhhHHHHHHHHH
Confidence 44555556666666666666666666543 33556677777777777777777777777776542 24556667777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHH
Q 003020 646 DVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE----RSMVR 721 (856)
Q Consensus 646 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 721 (856)
..|++++|...|++..+.. +.+......+...+.+.+..+.+..+..........+. .+. ++..+.. .+..+
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW--GWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST--HHH-HHHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh--hhh-HHHHHHHHHHHHHHHH
Confidence 7777777777777776653 34454444444455555555555555555444322121 111 1122211 11223
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 722 QAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 722 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
.+...+.......|....+|..++..|...|++++|++.|++++...|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 3333333322222444567888899999999999999999999988765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.14 E-value=4.1e-09 Score=106.43 Aligned_cols=218 Identities=7% Similarity=-0.084 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc--------------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003020 338 KEASETFAQMLREGIVPTTVTFNTMIHIYGN--------------NDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAK 403 (856)
Q Consensus 338 ~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~--------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 403 (856)
+.+..+|++++..- +-+...|...+..+.. .+..++|..+|++..+...+.+...|...+....+
T Consensus 33 ~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 44566777776642 2244455444443322 22346778888888765545566777777888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHH-HHHcCChHHHHH
Q 003020 404 NDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRM-YIEAGMLEKSWL 482 (856)
Q Consensus 404 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~ 482 (856)
.|+++.|..+|+++++.........|...+....+.|+.++|.++|+++++.+.. +...+...+.. +...|+.+.|..
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHH
Confidence 8888888888888876543333446777788888888888888888888776433 33344333333 233567777888
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCC----cHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 003020 483 WFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKL----TVLVFNVMVKAYGMGRNYDKACNLFDSMTS 557 (856)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 557 (856)
+|+++....|.+...|...++.+...|+++.|+.+|+++....+. ...+|...+..-...|+.+.+.++++++.+
T Consensus 191 i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888777777777777777777777777777777777776665432 245677777776777777777777776655
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=1.2e-08 Score=85.54 Aligned_cols=99 Identities=11% Similarity=0.062 Sum_probs=82.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGR 788 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 788 (856)
.-+..+...|++++|+..|+++++..|.++..|..++.+|...|++++|+..++++++.+|. ++..|..++.++...|+
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence 34566778888888888888888888888888888888888888888888888888888887 88888888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHH
Q 003020 789 FKDVIGTFKDMVNAAIQPDDFT 810 (856)
Q Consensus 789 ~~~A~~~~~~~~~~g~~p~~~~ 810 (856)
+++|+..|++.++ +.|+...
T Consensus 87 ~~~A~~~~~~a~~--~~p~~~~ 106 (117)
T d1elwa_ 87 FEEAKRTYEEGLK--HEANNPQ 106 (117)
T ss_dssp HHHHHHHHHHHHT--TCTTCHH
T ss_pred HHHHHHHHHHHHH--hCCCCHH
Confidence 8888888888887 4666554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.5e-08 Score=93.54 Aligned_cols=140 Identities=12% Similarity=0.072 Sum_probs=106.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHH
Q 003020 676 IKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFE 755 (856)
Q Consensus 676 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 755 (856)
+..+...|++++|++.|+.+ .+|+...|..++.+|...|++++|++.|+++++.+|.++.+|..++.+|.+.|+++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHH
Confidence 55667788888888888753 23677778888888888999999999999988888888889999999999999999
Q ss_pred HHHHHHHHHHHcCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003020 756 EATRIAKQMRESGLIS---------------DLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLGAVLM 819 (856)
Q Consensus 756 ~A~~~~~~~~~~~~~p---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 819 (856)
+|++.|+++++..+.. ...++..++.+|...|++++|.+.++++++....|+.......+..+.
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~ 166 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 9999888887653221 135677888899999999999999998887544443444444444333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=2.3e-08 Score=83.70 Aligned_cols=109 Identities=14% Similarity=0.007 Sum_probs=96.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 003020 673 NSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG 752 (856)
Q Consensus 673 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 752 (856)
...+..+...|++++|+..|+++++..+ .+...|..++.++...|++++|+..++++.+..|.++..|..++.++...|
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC-cchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 3457788899999999999999988542 567789999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 753 RFEEATRIAKQMRESGLISDLLSYNNVLGLY 783 (856)
Q Consensus 753 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 783 (856)
++++|+..++++++..|. ++..+..+..+-
T Consensus 86 ~~~~A~~~~~~a~~~~p~-~~~~~~~l~~l~ 115 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEAN-NPQLKEGLQNME 115 (117)
T ss_dssp CHHHHHHHHHHHHTTCTT-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHh
Confidence 999999999999999888 888887777654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=4.9e-08 Score=87.10 Aligned_cols=98 Identities=15% Similarity=0.173 Sum_probs=78.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGR 788 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 788 (856)
..+..|.+.|++++|+..|+++++..|.+...|..++.+|...|++++|+..|+++++..|. +..+|..++.+|...|+
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCC
Confidence 34566778888888888888888888888888888888888888888888888888888777 77888888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHH
Q 003020 789 FKDVIGTFKDMVNAAIQPDDF 809 (856)
Q Consensus 789 ~~~A~~~~~~~~~~g~~p~~~ 809 (856)
+++|+..++++++. .|+..
T Consensus 94 ~~eA~~~~~~a~~~--~p~~~ 112 (159)
T d1a17a_ 94 FRAALRDYETVVKV--KPHDK 112 (159)
T ss_dssp HHHHHHHHHHHHHH--STTCH
T ss_pred HHHHHHHHHHHHHc--CCCCH
Confidence 88888888888774 45533
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=6.4e-08 Score=86.32 Aligned_cols=122 Identities=12% Similarity=-0.046 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 003020 672 YNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN 751 (856)
Q Consensus 672 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 751 (856)
+...+..|.+.|++++|+..|+++++... .+...|..++.+|...|++++|+..|+++++..|.+..+|..++.++...
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence 44556788899999999999999998653 46778999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHH
Q 003020 752 GRFEEATRIAKQMRESGLISDLLSYNNVLGLY--AVDGRFKDVIGT 795 (856)
Q Consensus 752 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~g~~~~A~~~ 795 (856)
|++++|+..++++++..|. ++..+..+..+. ...+.+++|+..
T Consensus 92 g~~~eA~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999887 777777766553 344556666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.81 E-value=2.3e-08 Score=93.56 Aligned_cols=103 Identities=10% Similarity=-0.136 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003020 667 PNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLI 746 (856)
Q Consensus 667 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 746 (856)
|+...+...+..+.+.|++++|+..|+++++..+ .+...|..++.+|.+.|++++|+..|+++++..|.++.+|..++.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 6777778888888888888888888888877542 457778888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC
Q 003020 747 MYKRNGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 747 ~~~~~g~~~~A~~~~~~~~~~~~~ 770 (856)
+|...|++++|+..|+++++..|.
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc
Confidence 888888888888888888876543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.77 E-value=3e-08 Score=82.20 Aligned_cols=91 Identities=10% Similarity=-0.028 Sum_probs=84.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGR 788 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 788 (856)
.++..+.+.|++++|+..++++....|.++.+|..++.++.+.|++++|+..++++++..|. ++.+|..++.+|...|+
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCC
Confidence 45677889999999999999999999999999999999999999999999999999999988 89999999999999999
Q ss_pred HHHHHHHHHHHH
Q 003020 789 FKDVIGTFKDMV 800 (856)
Q Consensus 789 ~~~A~~~~~~~~ 800 (856)
+++|++.+++.+
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999864
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=3e-07 Score=84.57 Aligned_cols=125 Identities=14% Similarity=0.035 Sum_probs=85.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 003020 642 NAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVR 721 (856)
Q Consensus 642 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 721 (856)
..+...|++++|++.|+++ .+|+..+|..++.+|...|++++|++.|++.++.+. .....|..++.++.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccHH
Confidence 3455666777777666543 245666666677777777777777777777766432 34556666677777777777
Q ss_pred HHHHHHHHHHhCCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003020 722 QAEEIFEIMKKKGDA----------------NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS 771 (856)
Q Consensus 722 ~A~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 771 (856)
+|++.|+++....+. ...++..++.++...|++++|.+.++++++..+.+
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 777777766553322 13567788889999999999999999998887664
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=2e-08 Score=84.28 Aligned_cols=106 Identities=9% Similarity=0.051 Sum_probs=86.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 003020 708 NCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGR---FEEATRIAKQMRESGLISD-LLSYNNVLGLY 783 (856)
Q Consensus 708 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 783 (856)
..++..+...+++++|++.|++++..+|.++.++..++.++.+.++ +++|+++++++++.++.|+ ..+|..++.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 4567778888899999999999999999999999999999987554 4569999999988776644 35788999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003020 784 AVDGRFKDVIGTFKDMVNAAIQPDDFTFKSLG 815 (856)
Q Consensus 784 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 815 (856)
.+.|++++|++.|+++++ +.|+......+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~ 112 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ--TEPQNNQAKELE 112 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH--hCcCCHHHHHHH
Confidence 999999999999999998 478766544443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.72 E-value=2.3e-08 Score=93.65 Aligned_cols=99 Identities=8% Similarity=-0.036 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003020 702 PDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLG 781 (856)
Q Consensus 702 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 781 (856)
|+...+...+..+.+.|++++|+..|+++++..|.++.+|..++.+|.+.|++++|+..++++++..|. ++.+|..++.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHHH
Confidence 344444444455555555555555555555555555555555555555555555555555555555444 4455555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 003020 782 LYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 782 ~~~~~g~~~~A~~~~~~~~~ 801 (856)
+|...|++++|+..|+++++
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 55555555555555555443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.71 E-value=2.2e-07 Score=92.37 Aligned_cols=128 Identities=11% Similarity=0.023 Sum_probs=58.9
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH-------
Q 003020 672 YNSLIKLYTK-VGYLKEAQETYKLLRSL----EASPD-VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANE------- 738 (856)
Q Consensus 672 ~~~l~~~~~~-~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------- 738 (856)
+..++..|.. .|++++|++.|+++.+. +..+. ..++..++..+...|++++|++.++++....+.+.
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 3334444422 35555555555544331 11111 22345555556666666666666666555442221
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHHHh--cCCHHHHHHHHHHH
Q 003020 739 FTYAMMLIMYKRNGRFEEATRIAKQMRESGLIS-D---LLSYNNVLGLYAV--DGRFKDVIGTFKDM 799 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~---~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 799 (856)
..+..++..+...|+++.|.+.++++.+..|.. + ......++.++.. .+++++|+..|+++
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 123344445555666666666666665554331 1 1223444444443 23456666666543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.69 E-value=1.8e-05 Score=76.89 Aligned_cols=223 Identities=17% Similarity=0.073 Sum_probs=130.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003020 567 YNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMK----LGQLEMAEEVYKDMIRFNVEPDVVVYGVLIN 642 (856)
Q Consensus 567 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 642 (856)
+..|...+...+++++|++.|++..+.| +...+..|...|.. ..++..|...+....+.+ +......+..
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~ 78 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccc
Confidence 3334444444444444444444444433 33333344444443 345666666666665543 3333333433
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003020 643 AFAD----VGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYT----KVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLY 714 (856)
Q Consensus 643 ~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 714 (856)
.+.. ..+.+.|...++...+.|. ......+...+. .......+...+...... .+...+..+...+
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~ 152 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLY 152 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhh
Confidence 3332 3456667777776666552 222222222222 234455666666655542 4455566666666
Q ss_pred HH----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-
Q 003020 715 SE----RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR----NGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAV- 785 (856)
Q Consensus 715 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 785 (856)
.. ..+...+...++...+. .++.++..|+..|.. ..++++|+..|+++.+.| ++..+..|+..|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~a~~~--g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G 227 (265)
T d1ouva_ 153 DAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNG 227 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTT
T ss_pred ccCCCcccccccchhhhhccccc--cccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcC
Confidence 64 45667777777777654 466777777777776 568888999999988876 66788888888875
Q ss_pred ---cCCHHHHHHHHHHHHHcCCCC
Q 003020 786 ---DGRFKDVIGTFKDMVNAAIQP 806 (856)
Q Consensus 786 ---~g~~~~A~~~~~~~~~~g~~p 806 (856)
..++++|.++|++..+.|..+
T Consensus 228 ~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 228 EGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCCccCHHHHHHHHHHHHHCcCHH
Confidence 347888999999888877443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.68 E-value=3.7e-07 Score=90.61 Aligned_cols=132 Identities=11% Similarity=0.021 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCC--CC----C
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSLEAS-PD----VYTSNCMIDLYSE-RSMVRQAEEIFEIMKKKG--DA----N 737 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~--~~----~ 737 (856)
.+|..++.+|.+.|++++|++.|++..+.... .+ ...+..++..|.. .|++++|++.++++.+.. .. .
T Consensus 78 ~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~ 157 (290)
T d1qqea_ 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 34555555555556666665555544431000 11 2234444444433 466666666666554332 01 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 738 EFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDL------LSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 738 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
..++..++..+...|++++|++.|+++....+.... ..+...+.++...|+++.|...++++.+
T Consensus 158 ~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred hhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 234555666666666666666666666655433110 2234445555566666666666666554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=5.6e-07 Score=80.82 Aligned_cols=85 Identities=9% Similarity=-0.185 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAV 785 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 785 (856)
+|+.+..+|.+.|++++|+..+++++...|.++.+|..++.+|...|++++|+..|+++++.+|. ++.....+..+..+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 56667778888888888888888888888888888888888888888888888888888888877 77777777777665
Q ss_pred cCCHHH
Q 003020 786 DGRFKD 791 (856)
Q Consensus 786 ~g~~~~ 791 (856)
.+...+
T Consensus 143 ~~~~~~ 148 (170)
T d1p5qa1 143 IRRQLA 148 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=4.2e-07 Score=77.20 Aligned_cols=104 Identities=12% Similarity=0.153 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------HHHHHHH
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISD------LLSYNNV 779 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l 779 (856)
.+..++..+...|++++|++.|+++++..|.++.++..++.+|.+.|++++|++.++++++..|... ..+|..+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3456788889999999999999999999999999999999999999999999999999988765411 2467788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003020 780 LGLYAVDGRFKDVIGTFKDMVNAAIQPDDFTF 811 (856)
Q Consensus 780 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 811 (856)
+..+...+++++|+..|++.+.. .|+....
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 115 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE--HRTPDVL 115 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 88889999999999999998874 4555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.49 E-value=0.00019 Score=69.26 Aligned_cols=225 Identities=13% Similarity=0.035 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCChHhHHH
Q 003020 529 VLVFNVMVKAYGMGRNYDKACNLFDSMTSHGAVPDKCSYNSLIQILAG----ADLPHMAKRYLRKMQEAGLVSDCIPYCA 604 (856)
Q Consensus 529 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 604 (856)
+..+..++..+...+++++|++.|++..+.| +...+..|...|.. ..++..|...+....+.+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 3344455555555566666666666655543 34444445555544 445566666666665544 3333333
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003020 605 VISSYMK----LGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFAD----VGNVKQAQSYFDAMESAGLPPNAVIYNSLI 676 (856)
Q Consensus 605 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 676 (856)
+...+.. ..+.+.|...++...+.|. ......+...+.. ......+...+...... .+...+..+.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhh
Confidence 4333332 3466777777777776542 2222223333332 34566677777776664 3566677777
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003020 677 KLYTK----VGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE----RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY 748 (856)
Q Consensus 677 ~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 748 (856)
..+.. ..+...+...++...+.+ +......+...|.. ..++++|+..|++..+.+ ++..+..|+..|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y 224 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQ 224 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHH
Confidence 77764 456677777777776643 45555566666655 568999999999998875 667888888888
Q ss_pred HH----cCCHHHHHHHHHHHHHcCCC
Q 003020 749 KR----NGRFEEATRIAKQMRESGLI 770 (856)
Q Consensus 749 ~~----~g~~~~A~~~~~~~~~~~~~ 770 (856)
.. ..+.++|.++|+++.+.|..
T Consensus 225 ~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 225 YNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 75 44889999999999998854
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.48 E-value=1.6e-06 Score=76.07 Aligned_cols=105 Identities=15% Similarity=-0.007 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC----CCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH
Q 003020 674 SLIKLYTKVGYLKEAQETYKLLRSLEA----SPD-----------VYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANE 738 (856)
Q Consensus 674 ~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 738 (856)
.-+..+.+.|++.+|+..|++++..-. .++ ..+|..++.+|.+.|++++|++.++++++..|.+.
T Consensus 22 ~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ 101 (153)
T d2fbna1 22 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV 101 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhh
Confidence 334445555566666655555554110 011 12333444444444455555555444444444444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 739 FTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNV 779 (856)
Q Consensus 739 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 779 (856)
.+|..++.++...|++++|+..|+++++.+|. +..+...+
T Consensus 102 ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l 141 (153)
T d2fbna1 102 KALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSY 141 (153)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred hhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 44444444554555555555555544444444 44433333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.47 E-value=2.8e-06 Score=75.97 Aligned_cols=94 Identities=13% Similarity=-0.063 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAV 785 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 785 (856)
.|..+..+|...|++++|+..++++++..|.+..+|..++.++...|++++|+..|+++++.+|. ++.+...+..+...
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 45667778888888888888888888888888888888888888888888888888888888877 77777777777666
Q ss_pred cCCHH-HHHHHHHHHH
Q 003020 786 DGRFK-DVIGTFKDMV 800 (856)
Q Consensus 786 ~g~~~-~A~~~~~~~~ 800 (856)
.+... ...++|.+|.
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 55543 3445554443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=1.3e-06 Score=78.42 Aligned_cols=129 Identities=13% Similarity=0.071 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003020 670 VIYNSLIKLYTKVGYLKEAQETYKLLRSL-EASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMY 748 (856)
Q Consensus 670 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 748 (856)
..+...+..+.+.|++++|+..|++.++. +..+.... .-......+ ...+|..++.+|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~---------------~~~~~~~~~------~~~~~~nla~~y 72 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN---------------EEAQKAQAL------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS---------------HHHHHHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch---------------HHHhhhchh------HHHHHHHHHHHH
Confidence 34555666777777777777777776652 11111000 000000000 123577899999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcC
Q 003020 749 KRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF-TFKSLGAVLMKCG 822 (856)
Q Consensus 749 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~G 822 (856)
.+.|++++|+..++++++.+|. ++.+|..++.+|...|++++|+..|+++++. .|+.. ....+..+..+.+
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHH
T ss_pred Hhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988 9999999999999999999999999999994 67544 3445544444433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=5.1e-07 Score=75.39 Aligned_cols=107 Identities=9% Similarity=0.013 Sum_probs=81.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCC--HHHHHHHHHH
Q 003020 673 NSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERS---MVRQAEEIFEIMKKKGDAN--EFTYAMMLIM 747 (856)
Q Consensus 673 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~ 747 (856)
..+++.+...+++++|.+.|++.+..++ .+..++..++.++.+.+ ++++|+++++++....|.+ ..+|..|+.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 4567778888889999999988888553 46677777888887644 4557888999888776544 3478889999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003020 748 YKRNGRFEEATRIAKQMRESGLISDLLSYNNVLG 781 (856)
Q Consensus 748 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 781 (856)
|.+.|++++|++.|+++++..|. +..+......
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~-~~~A~~l~~~ 114 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQ-NNQAKELERL 114 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 99999999999999999998877 6665554443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.42 E-value=2.8e-06 Score=74.53 Aligned_cols=102 Identities=7% Similarity=0.004 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKGD-----AN-----------EFTYAMMLIMYKRNGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 769 (856)
.+...+..+.+.|++++|+..|++++...+ ++ ..+|..++.+|.+.|++++|++.++++++.+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p 98 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 98 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc
Confidence 344566778899999999999999887542 11 23677899999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 770 ISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFT 810 (856)
Q Consensus 770 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 810 (856)
. +..+|..++.+|...|++++|+..|++.++. .|+...
T Consensus 99 ~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~ 136 (153)
T d2fbna1 99 N-NVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLD 136 (153)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHH
T ss_pred h-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH
Confidence 8 8999999999999999999999999999994 676554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.41 E-value=1.8e-06 Score=77.43 Aligned_cols=77 Identities=10% Similarity=-0.107 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 706 TSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783 (856)
Q Consensus 706 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 783 (856)
.|..+..++.+.|++++|+..++++++..|.++.+|..++.++...|++++|+..|+++++..|. +..+...+..+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~ 155 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555554 444444444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.40 E-value=1.3e-06 Score=72.03 Aligned_cols=92 Identities=10% Similarity=-0.096 Sum_probs=79.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 003020 673 NSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG 752 (856)
Q Consensus 673 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 752 (856)
..++..+.+.|++++|+..|+++++..+ -+...|..++.++.+.|++++|+..++++.+..|.+..+|..++.+|...|
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccccc-ccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 3456778889999999999999888542 357788889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 003020 753 RFEEATRIAKQMR 765 (856)
Q Consensus 753 ~~~~A~~~~~~~~ 765 (856)
++++|++.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998864
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.37 E-value=4.6e-07 Score=78.73 Aligned_cols=99 Identities=12% Similarity=-0.039 Sum_probs=71.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003020 714 YSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN----------GRFEEATRIAKQMRESGLISDLLSYNNVLGLY 783 (856)
Q Consensus 714 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 783 (856)
|.+.+.+++|+..++.+.+..|.++.++..++.+|... +.+++|+..|+++++.+|. ++.+|+.++.+|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y 85 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHH
Confidence 44556677788888887777777777777777777643 4457788888888888877 778888888888
Q ss_pred HhcCC-----------HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003020 784 AVDGR-----------FKDVIGTFKDMVNAAIQPDDFTFKSLG 815 (856)
Q Consensus 784 ~~~g~-----------~~~A~~~~~~~~~~g~~p~~~~~~~l~ 815 (856)
...|+ +++|.+.|+++++ +.|+..++..-+
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L 126 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 126 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHH
Confidence 76653 5778888888877 477766654433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=3.9e-07 Score=98.01 Aligned_cols=231 Identities=8% Similarity=-0.063 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 003020 479 KSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSH 558 (856)
Q Consensus 479 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 558 (856)
+|.+.|+++....|...+++..++..+..++++++| |+++...++......+...... ...+..+++.++...+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence 567778888777788888888888888888888776 5544433222122221111110 01123344444444433
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003020 559 GAVPDKCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYG 638 (856)
Q Consensus 559 ~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 638 (856)
...++..-..... +...+...+.++.|+..+....+.. +++...+.
T Consensus 79 ~~~~~~~~~~~~~---------------------------------~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~ 124 (497)
T d1ya0a1 79 RANPNRSEVQANL---------------------------------SLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSS 124 (497)
T ss_dssp SSCTTTTHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHTC--------------
T ss_pred ccCccHHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHH
Confidence 2222211111000 0011112233444444444433322 23444566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 003020 639 VLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERS 718 (856)
Q Consensus 639 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 718 (856)
.+...+.+.|+.++|...+.+..... ...++..++..+...|++++|+..|+++.+..+ .+...|+.++..+...|
T Consensus 125 ~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~~~~~ 200 (497)
T d1ya0a1 125 QLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILASSKG 200 (497)
T ss_dssp ------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHHTT
T ss_pred HhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHcC
Confidence 66666777777777776666554421 134566677777777788888888777777431 33457777777777778
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 003020 719 MVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNG 752 (856)
Q Consensus 719 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 752 (856)
+..+|+..|.+.+...+|.+.++..|...+.+..
T Consensus 201 ~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 201 DHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp CHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 8888888888777777777777777777765543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=5.4e-07 Score=96.85 Aligned_cols=228 Identities=10% Similarity=-0.050 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChH-hHHHHHHHHHhcCCHHHHHHHHHH
Q 003020 547 KACNLFDSMTSHGAVPD-KCSYNSLIQILAGADLPHMAKRYLRKMQEAGLVSDCI-PYCAVISSYMKLGQLEMAEEVYKD 624 (856)
Q Consensus 547 ~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 624 (856)
+|.+.|++..+. .|+ ...+..+..++...+++++| +++++... |+.. .++.... +. ...+..+.+.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~-Lw-~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQD-LW-NHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHH-HH-HHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHH-HH-HHHHHHHHHHHHH
Confidence 677788887663 343 23445556666666666655 55555432 1111 1111111 11 1124556677777
Q ss_pred HHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 003020 625 MIRFNVEPDVVVYGVLINA--FADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASP 702 (856)
Q Consensus 625 ~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 702 (856)
..+....++..-....... ....+.++.|+..+.+..+.. +++...+..++..+.+.|+.++|...++...... |
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~ 151 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C 151 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--H
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H
Confidence 6654333332222211111 223445556665555544432 4456677888888888889888888887766521 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003020 703 DVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGL 782 (856)
Q Consensus 703 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 782 (856)
...+..+++.+...|++++|+..|+++.+..|.+..+|+.|+..+...|+..+|+..|.+++...+. .+.++.+|+..
T Consensus 152 -~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~-~~~a~~nL~~~ 229 (497)
T d1ya0a1 152 -QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP-FPAASTNLQKA 229 (497)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC-CHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CHHHHHHHHHH
Confidence 2466778888888999999999999999888989999999999999999999999999999888764 78888888887
Q ss_pred HHhcCC
Q 003020 783 YAVDGR 788 (856)
Q Consensus 783 ~~~~g~ 788 (856)
+.+..+
T Consensus 230 ~~~~~~ 235 (497)
T d1ya0a1 230 LSKALE 235 (497)
T ss_dssp HHHHTT
T ss_pred HHHhhh
Confidence 765443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.23 E-value=5.8e-06 Score=74.01 Aligned_cols=126 Identities=9% Similarity=-0.064 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR 750 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 750 (856)
.+...+..+...|++++|++.|+++++.. .......... ......|.+...|..++.++.+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~-------~~~~~~~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDA-------DGAKLQPVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHH-------HHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhH-------HHHHhChhhHHHHHHHHHHHHh
Confidence 34555666777788888877777665410 0000011111 1112224566688899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Q 003020 751 NGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF-TFKSLGAVL 818 (856)
Q Consensus 751 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~ 818 (856)
.|++++|+..++++++..|. ++.+|..++.+|...|++++|+..|+++++. .|+.. ....+..+.
T Consensus 90 ~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVK 155 (169)
T ss_dssp TTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 99999999999999999987 9999999999999999999999999999994 66543 454544443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.21 E-value=2.2e-05 Score=70.36 Aligned_cols=133 Identities=9% Similarity=0.024 Sum_probs=93.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 003020 672 YNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRN 751 (856)
Q Consensus 672 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 751 (856)
....+......|++++|.+.|...+..- +.... ......+-+...-..+. +.....+..++.++...
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~---~~~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALV---EDKVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHH---HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHH---HHHHHHHHHHHHHHHHC
Confidence 3344566778899999999998888732 11100 00000000111111111 11345678899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHH
Q 003020 752 GRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN-----AAIQPDDFTFKSLGAVL 818 (856)
Q Consensus 752 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~l~~~~ 818 (856)
|++++|+..++++++..|. +...|..++.+|...|++++|++.|+++.+ .|+.|...+-...-..+
T Consensus 81 g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~il 151 (179)
T d2ff4a2 81 GRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL 151 (179)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence 9999999999999999998 999999999999999999999999999855 69999987754444433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.16 E-value=6.6e-06 Score=71.12 Aligned_cols=79 Identities=11% Similarity=0.008 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003020 718 SMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGR-----------FEEATRIAKQMRESGLISDLLSYNNVLGLYAVD 786 (856)
Q Consensus 718 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 786 (856)
+.+++|+..|+++++..|.++.+|..++.+|...|+ +++|.+.|+++++..|. +...+..+...
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~-~~~~~~~L~~~---- 129 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD-NTHYLKSLEMT---- 129 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCC-HHHHHHHHHHH----
Confidence 445789999999999999999999999999887653 68999999999999887 66666666554
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 003020 787 GRFKDVIGTFKDMVNAAI 804 (856)
Q Consensus 787 g~~~~A~~~~~~~~~~g~ 804 (856)
..|.+++.++.+.|+
T Consensus 130 ---~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 130 ---AKAPQLHAEAYKQGL 144 (145)
T ss_dssp ---HTHHHHHHHHHHSSS
T ss_pred ---HHHHHHHHHHHHHhc
Confidence 356666666666553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.15 E-value=2e-05 Score=70.22 Aligned_cols=126 Identities=13% Similarity=0.085 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003020 669 AVIYNSLIKLYTKVGYLKEAQETYKLLRSL-EA--SPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMML 745 (856)
Q Consensus 669 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 745 (856)
...+...+..+.+.|++++|+..|++.+.. .. ..+... . ..... ....+|..++
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~----------------~-~~~~~------~~~~~~~Nla 71 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE----------------S-KASES------FLLAAFLNLA 71 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH----------------H-HHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh----------------h-hhcch------hHHHHHHhHH
Confidence 345666677777778888888877766541 11 111110 0 00000 1134677899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHH
Q 003020 746 IMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFT-FKSLGAVLMK 820 (856)
Q Consensus 746 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~ 820 (856)
.+|.+.|++++|+..++++++.+|. +..+|..++.+|...|++++|+..|+++++ +.|+... ...+..+..+
T Consensus 72 ~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 72 MCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999988 999999999999999999999999999998 4676543 4444444333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=8.8e-06 Score=68.69 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH-------HHHHH
Q 003020 671 IYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANE-------FTYAM 743 (856)
Q Consensus 671 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~ 743 (856)
.+..++..+...|++++|+..|+++++.++ .+...+..+..+|.+.|++++|+..++++++..|.+. .+|..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 345567777788888888888887777542 3566777778888888888888888887776553332 35667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003020 744 MLIMYKRNGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 744 l~~~~~~~g~~~~A~~~~~~~~~~~~ 769 (856)
++..+...+++++|++.|++.+...+
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~~ 110 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEHR 110 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 77778888888888888888887653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.90 E-value=0.00015 Score=64.64 Aligned_cols=128 Identities=11% Similarity=0.014 Sum_probs=91.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003020 637 YGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE 716 (856)
Q Consensus 637 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 716 (856)
...........|++++|...|.+.+..- +... +......+-+...-..+.. .....+..++.++..
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3344567788999999999999998741 1110 0000110111111111111 123456788999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCCCHHHHHH
Q 003020 717 RSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMR-----ESGLISDLLSYNN 778 (856)
Q Consensus 717 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~ 778 (856)
.|++++|+..++++....|.+...|..++.+|...|++++|++.|+++. +.|+.|++.+-..
T Consensus 80 ~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 9999999999999999999999999999999999999999999999984 4689988765433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.89 E-value=0.0079 Score=58.75 Aligned_cols=129 Identities=13% Similarity=0.101 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 003020 325 NTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKN 404 (856)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 404 (856)
..++.-|.+.|.++.|..+|..+. -|..++..+.+.+++..|.+.+.+.. +..+|..+...+.+.
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDG 82 (336)
T ss_dssp -----------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhC
Confidence 344555556666666666665432 14455555555666666555554432 444555555555554
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHc
Q 003020 405 DKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEA 474 (856)
Q Consensus 405 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 474 (856)
....-|. +.......+......++..|-..|.+++...+++..... -..+...++.++..|++.
T Consensus 83 ~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 83 KEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp TCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred cHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 4433221 111112223333445555555566666666665555432 123444455555555543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.89 E-value=0.00014 Score=63.53 Aligned_cols=89 Identities=15% Similarity=0.003 Sum_probs=57.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCC---
Q 003020 713 LYSERSMVRQAEEIFEIMKKKGDA------------NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGL-----ISD--- 772 (856)
Q Consensus 713 ~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~--- 772 (856)
.+...|++++|+..|+++++..+. ...+|+.++.+|...|++++|++.++++++..+ .++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 334455555555555555543311 134567777777888888888877777775321 111
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 773 --LLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 773 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
..+++.++.+|...|++++|+..|+++++
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 13567788888888888888888888776
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=6e-05 Score=59.29 Aligned_cols=70 Identities=11% Similarity=0.036 Sum_probs=32.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003020 709 CMIDLYSERSMVRQAEEIFEIMKKKGD-------ANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNV 779 (856)
Q Consensus 709 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 779 (856)
.++..+.+.|++++|+..|+++.+..| ....++..|+.++.+.|++++|+..++++++..|. ++.+++++
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a~~Nl 86 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRANGNL 86 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 344444444444444444444433221 11234455555555555555555555555555544 44444444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.78 E-value=0.015 Score=56.59 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=24.5
Q ss_pred CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 003020 355 TTVTFNTMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKN 404 (856)
Q Consensus 355 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 404 (856)
+......++..|...|.+++...+++...... +.+...++-++..|++.
T Consensus 98 ~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 98 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 146 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHh
Confidence 33444455555555555555555555544221 33444555555555554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.74 E-value=2.3e-05 Score=75.11 Aligned_cols=121 Identities=14% Similarity=0.018 Sum_probs=69.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003020 680 TKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATR 759 (856)
Q Consensus 680 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 759 (856)
.+.|++++|+..|++.++..+ .+...+..++..++..|++++|...++.+.+..|.+...+..+..++...+..+++..
T Consensus 7 L~~G~l~eAl~~l~~al~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence 345667777777766666432 3455666667777777777777777777776666666666666655554444443332
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003020 760 IAKQMRESGLISDLLSYNNVLGLYAVDGRFKDVIGTFKDMVN 801 (856)
Q Consensus 760 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 801 (856)
...+....+..++...+...+..+...|++++|.+.++++.+
T Consensus 86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 222211112111223444455666677777777777777666
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.52 E-value=0.00028 Score=61.52 Aligned_cols=97 Identities=13% Similarity=0.018 Sum_probs=69.1
Q ss_pred HHHHH--HHHHHhcCCHHHHHHHHHHHHhCCC-CCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---
Q 003020 671 IYNSL--IKLYTKVGYLKEAQETYKLLRSLEA-SPD----------VYTSNCMIDLYSERSMVRQAEEIFEIMKKKG--- 734 (856)
Q Consensus 671 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 734 (856)
+|..+ +..+...|++++|++.|++.++... .|+ ...|+.+..+|...|++++|.+.+++.+...
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 4455566778888888877766211 121 3467778888888888888888888776532
Q ss_pred ----CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003020 735 ----DA----NEFTYAMMLIMYKRNGRFEEATRIAKQMRES 767 (856)
Q Consensus 735 ----~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 767 (856)
+. ...+++.++.+|...|++++|+..|+++++.
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 1236788999999999999999999999876
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=0.00026 Score=55.45 Aligned_cols=76 Identities=8% Similarity=-0.043 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-
Q 003020 737 NEFTYAMMLIMYKRNGRFEEATRIAKQMRESGLI-----SD-LLSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDF- 809 (856)
Q Consensus 737 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~- 809 (856)
++..+..++..+.+.|++++|+..++++++..+. ++ ..+++.++.+|.+.|++++|+..++++++. .|+..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--~P~~~~ 81 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQR 81 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--CcCCHH
Confidence 3455678999999999999999999999876332 22 468999999999999999999999999994 77754
Q ss_pred HHHHH
Q 003020 810 TFKSL 814 (856)
Q Consensus 810 ~~~~l 814 (856)
.+..+
T Consensus 82 a~~Nl 86 (95)
T d1tjca_ 82 ANGNL 86 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 34444
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.28 E-value=0.00011 Score=70.17 Aligned_cols=66 Identities=11% Similarity=-0.059 Sum_probs=33.9
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 003020 474 AGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAY 539 (856)
Q Consensus 474 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 539 (856)
.|++++|+..+++.....|.+...+..++..++..|++++|...|+.+.+..|.....+..+...+
T Consensus 9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll 74 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV 74 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555555554444444444444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.88 E-value=0.012 Score=48.92 Aligned_cols=110 Identities=10% Similarity=-0.038 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 003020 684 YLKEAQETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR----NGRFEEATR 759 (856)
Q Consensus 684 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 759 (856)
++++|+++|++..+.+. +.. ...|. .....+.++|++++++..+.+ ++.+...|+..|.. ..+.++|++
T Consensus 8 d~~~A~~~~~kaa~~g~-~~a--~~~l~--~~~~~~~~~a~~~~~~aa~~g--~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-MFG--CLSLV--SNSQINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-TTH--HHHHH--TCTTSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-hhh--hhhhc--cccccCHHHHHHHHhhhhccc--chhhhhhHHHhhhhccccchhhHHHHH
Confidence 45556666665555442 211 11121 123456677777777776543 55666666666654 346778888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 003020 760 IAKQMRESGLISDLLSYNNVLGLYAV----DGRFKDVIGTFKDMVNAA 803 (856)
Q Consensus 760 ~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 803 (856)
+|++..+.+ ++.+...|+..|.. ..+.++|+.+|++..+.|
T Consensus 81 ~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 81 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 888887765 56667777777765 346777888888877765
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.15 E-value=0.085 Score=43.39 Aligned_cols=111 Identities=11% Similarity=0.013 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 003020 649 NVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLYSE----RSMVRQAE 724 (856)
Q Consensus 649 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 724 (856)
++++|+.+|++..+.|. +. ....+. .....+.++|+++|++..+.+ ++.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~-~~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-MF--GCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-TT--HHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-hh--hhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 44556666666555542 11 111222 123356667777777766644 33444455555543 45678888
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Q 003020 725 EIFEIMKKKGDANEFTYAMMLIMYKR----NGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 769 (856)
++|++..+.+ ++.+...|+..|.. ..+.++|.++|+++.+.|.
T Consensus 80 ~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 8888887654 55566677777765 4578888888888888763
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.96 E-value=0.022 Score=45.50 Aligned_cols=77 Identities=5% Similarity=-0.116 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 735 DANEFTYAMMLIMYKRNGR---FEEATRIAKQMRESGLISDL-LSYNNVLGLYAVDGRFKDVIGTFKDMVNAAIQPDDFT 810 (856)
Q Consensus 735 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 810 (856)
.+...+....++++.+..+ .++|+.+++++.+.+|. +. .+++.++-+|.+.|++++|...++++++ +.|+..-
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~-~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHH
Confidence 3556677777777776643 45777778777776654 33 5777778888888888888888888877 4676554
Q ss_pred HHHH
Q 003020 811 FKSL 814 (856)
Q Consensus 811 ~~~l 814 (856)
...|
T Consensus 109 A~~L 112 (124)
T d2pqrb1 109 VGAL 112 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=1.2 Score=45.26 Aligned_cols=420 Identities=9% Similarity=-0.037 Sum_probs=226.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh--cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003020 323 TYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYG--NNDQLAEVDSLIKKMEELHCPPDTRTYNILIFL 400 (856)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 400 (856)
.|. .+.-..+.|+..++..+...+.. .| ...|...-..-. .....+++..++++... .|.....-...+..
T Consensus 9 ~y~-~a~~a~~~~~~~~~~~~~~~L~d---yp-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~--~P~~~~lr~~~l~~ 81 (450)
T d1qsaa1 9 RYA-QIKQAWDNRQMDVVEQMMPGLKD---YP-LYPYLEYRQITDDLMNQPAVTVTNFVRANPT--LPPARTLQSRFVNE 81 (450)
T ss_dssp HHH-HHHHHHHTTCHHHHHHHSGGGTT---ST-THHHHHHHHHHHTGGGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHCCCHHHHHHHHhhhcC---CC-CHHHHHHHHHHhccccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHH
Confidence 443 34445688899888888777632 23 334443332222 23345555555544211 01111223344566
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHH
Q 003020 401 HAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRRMVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKS 480 (856)
Q Consensus 401 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 480 (856)
+.+.+++...+..+. ..+.+...-...+.+....|+.++|...+..+=..|.. .+....
T Consensus 82 L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~--------------- 140 (450)
T d1qsaa1 82 LARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACD--------------- 140 (450)
T ss_dssp HHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHH---------------
T ss_pred HHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHH---------------
Confidence 777888766554332 22345555556777888899999999888877655432 112222
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 003020 481 WLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFICCQEGKKLTVLVFNVMVKAYGMGRNYDKACNLFDSMTSHGA 560 (856)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 560 (856)
.+++.+...+..+.+.+...+......|+...|..+...+.. .........+.......... .... . .
T Consensus 141 -~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~---~~~~~~~a~~~l~~~p~~~~---~~~~---~--~ 208 (450)
T d1qsaa1 141 -KLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPA---DYQTIASAIISLANNPNTVL---TFAR---T--T 208 (450)
T ss_dssp -HHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG---GGHHHHHHHHHHHHCGGGHH---HHHH---H--S
T ss_pred -HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCCh---hHHHHHHHHHHHHhChHhHH---HHHh---c--C
Confidence 233333444455555555666677778888888877654432 22344444444443322222 2111 1 1
Q ss_pred CCCHHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCCCChHhHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003020 561 VPDKCSYNSLIQILAG--ADLPHMAKRYLRKMQEAGLVSDCIPYCAVIS----SYMKLGQLEMAEEVYKDMIRFNVEPDV 634 (856)
Q Consensus 561 ~p~~~~~~~ll~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~~~~~~~~~ 634 (856)
.++......+..++.+ ..+.+.+..++......... +..-...+-. .....+..+.+...+......+ .+.
T Consensus 209 ~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~ 285 (450)
T d1qsaa1 209 GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QST 285 (450)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCH
T ss_pred CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cch
Confidence 2233333333333332 34677787777776654322 2222222222 2223456677777777776543 344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003020 635 VVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQETYKLLRSLEASPDVYTSNCMIDLY 714 (856)
Q Consensus 635 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 714 (856)
......+......+++..+...+..|... ......-.--++.++...|+.++|...|..+.. .++ -|..|..
T Consensus 286 ~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa-- 357 (450)
T d1qsaa1 286 SLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAA-- 357 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHH--
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHH--
Confidence 44444555556678888888888777432 223345556677888888888888888888764 133 2332221
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003020 715 SERSMVRQAEEIFEIMKKKGDANEF---TYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLSYNNVLGLYAVDGRFKD 791 (856)
Q Consensus 715 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 791 (856)
.+.|..- .+-..-....+.... .-...+..+...|...+|...+..+.+. .++.....++....+.|.++.
T Consensus 358 ~~Lg~~~---~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~ 431 (450)
T d1qsaa1 358 QRIGEEY---ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDL 431 (450)
T ss_dssp HHTTCCC---CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCCC---CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhH
Confidence 1222100 000000000001110 0113456677889999998888887754 256677778888888899998
Q ss_pred HHHHHHHH
Q 003020 792 VIGTFKDM 799 (856)
Q Consensus 792 A~~~~~~~ 799 (856)
|+....+.
T Consensus 432 aI~a~~~~ 439 (450)
T d1qsaa1 432 SVQATIAG 439 (450)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 88776654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.96 E-value=0.59 Score=36.44 Aligned_cols=140 Identities=14% Similarity=0.101 Sum_probs=74.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003020 610 MKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNSLIKLYTKVGYLKEAQ 689 (856)
Q Consensus 610 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 689 (856)
.-.|..++..++..+.... .+..-||.++--....-+-+-....++.+-+. +.. ...+......
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FDl------------s~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDL------------DKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCG------------GGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh-cCc------------hhhhcHHHHH
Confidence 3345566666666665542 24455555554444444444444444444221 000 1122222222
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003020 690 ETYKLLRSLEASPDVYTSNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKRNGRFEEATRIAKQMRESGL 769 (856)
Q Consensus 690 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 769 (856)
..+-.+ ..+.......++.+..+|+-+.-.++++.+.+.+.+++.....++.+|.+.|+..++-+++.++-+.|.
T Consensus 77 ~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 77 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 222211 122333445566666777777777777776666667777777777777777777777777777777665
Q ss_pred C
Q 003020 770 I 770 (856)
Q Consensus 770 ~ 770 (856)
+
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=2.6 Score=42.48 Aligned_cols=354 Identities=10% Similarity=0.019 Sum_probs=202.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 003020 361 TMIHIYGNNDQLAEVDSLIKKMEELHCPPDTRTYNILIFLHAKNDKISMASRYFWKMKEANLEPDIVSYRTLLYAYSIRR 440 (856)
Q Consensus 361 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 440 (856)
..+..+.+.+++......+. ..+.+...-.....+....|+.++|...+..+-..|. ........
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~c~~--------- 141 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDK--------- 141 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHH---------
T ss_pred HHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchHHHH---------
Confidence 34556677788766444331 2244555555667888889999999988887765542 12222233
Q ss_pred CHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhhHHHHHHHhhcCCHHHHHHHHHH
Q 003020 441 MVCEAEELISEMDGGGLEIDEYTQSALTRMYIEAGMLEKSWLWFRRFHLAGDMSSEGYSANIDGYGERGHVLEAERAFIC 520 (856)
Q Consensus 441 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 520 (856)
+|..+...|. ++...+-.-+......|+...|..+...+. +.........+.....-..+.... ..
T Consensus 142 -------l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~---~~~~~~~~a~~~l~~~p~~~~~~~---~~ 207 (450)
T d1qsaa1 142 -------LFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMP---ADYQTIASAIISLANNPNTVLTFA---RT 207 (450)
T ss_dssp -------HHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCC---GGGHHHHHHHHHHHHCGGGHHHHH---HH
T ss_pred -------HHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCC---hhHHHHHHHHHHHHhChHhHHHHH---hc
Confidence 3444444332 344444455566677788888877765442 111122222233332222222211 11
Q ss_pred HhcCCCCcHHHHHHHHHHHH--ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHcCCChHHHHHHHHHHHHcC
Q 003020 521 CQEGKKLTVLVFNVMVKAYG--MGRNYDKACNLFDSMTSHGAVPDKCSYNSLI----QILAGADLPHMAKRYLRKMQEAG 594 (856)
Q Consensus 521 ~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll----~~~~~~~~~~~A~~~~~~~~~~~ 594 (856)
.+.+......+..++. ...+.+.|..++......... +..-...+- ......+..+.+...+......+
T Consensus 208 ----~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 282 (450)
T d1qsaa1 208 ----TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS 282 (450)
T ss_dssp ----SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC
T ss_pred ----CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc
Confidence 1222222222222222 235788899999887765322 222222222 22334567788888887776654
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003020 595 LVSDCIPYCAVISSYMKLGQLEMAEEVYKDMIRFNVEPDVVVYGVLINAFADVGNVKQAQSYFDAMESAGLPPNAVIYNS 674 (856)
Q Consensus 595 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 674 (856)
.+.....-.+......+++..+...++.+... ........--+..++...|+.++|...|..+... ++ |-.
T Consensus 283 --~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG 353 (450)
T d1qsaa1 283 --QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYP 353 (450)
T ss_dssp --CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHH
T ss_pred --cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHH
Confidence 34444444555567789999999999887542 2223445556788999999999999999998742 33 333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHH---HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 003020 675 LIKLYTKVGYLKEAQETYKLLRSLEASPD-VYT---SNCMIDLYSERSMVRQAEEIFEIMKKKGDANEFTYAMMLIMYKR 750 (856)
Q Consensus 675 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 750 (856)
.+.+ .+.|..-. + . .......+. ... -...+..+...|....|...+..+... .++.....++....+
T Consensus 354 ~LAa-~~Lg~~~~---~-~-~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~ 425 (450)
T d1qsaa1 354 MVAA-QRIGEEYE---L-K-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFN 425 (450)
T ss_dssp HHHH-HHTTCCCC---C-C-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHH
T ss_pred HHHH-HHcCCCCC---C-C-cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 3322 22332100 0 0 000000011 111 112345677899999999999988754 356677788899999
Q ss_pred cCCHHHHHHHHHHHH
Q 003020 751 NGRFEEATRIAKQMR 765 (856)
Q Consensus 751 ~g~~~~A~~~~~~~~ 765 (856)
.|.++.|+....++.
T Consensus 426 ~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 426 NQWWDLSVQATIAGK 440 (450)
T ss_dssp TTCHHHHHHHHHHTT
T ss_pred CCChhHHHHHHHHHH
Confidence 999999998877663
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.63 E-value=0.27 Score=38.96 Aligned_cols=74 Identities=11% Similarity=0.018 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003020 701 SPDVYTSNCMIDLYSER---SMVRQAEEIFEIMKKKGDANE-FTYAMMLIMYKRNGRFEEATRIAKQMRESGLISDLLS 775 (856)
Q Consensus 701 ~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 775 (856)
.+...+--....++.+. .+.++|+.+++.+.+..|.+. ..+..|+-+|.+.|++++|.+.++++++..|. +..+
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~-n~qA 109 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQV 109 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC-cHHH
Confidence 35555555556666654 345788888888887766664 57788888999999999999999999998877 5443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.02 E-value=3.4 Score=32.13 Aligned_cols=139 Identities=9% Similarity=0.037 Sum_probs=63.4
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHhhhccccCCcchhhhhhhhccCCcCCCC
Q 003020 239 CSKGGLKEEAVCWLERMNEGGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSSRESLRHGEDTKTMIGKVENGSHVNGS 318 (856)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (856)
+.-.|..++..++..+..... +..-||-++--....-+-+...+.++.+.+.-++..-.++.+.+.-.-.. .
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~-----n 83 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN-----N 83 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT-----T
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHh-----c
Confidence 344566777777777766542 33344444444444444555555555544322221111111111000000 0
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 003020 319 LSSYTYNTLIDTYGKAGQLKEASETFAQMLREGIVPTTVTFNTMIHIYGNNDQLAEVDSLIKKMEELH 386 (856)
Q Consensus 319 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 386 (856)
.+..-.+..++...++|+-+.-.++++.+.+. -+|++.....+..+|.+.|...++-+++.++-+.|
T Consensus 84 ~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 84 TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 01233444455555555555555555554442 24455555555555555555555555555555544
|