Citrus Sinensis ID: 003028
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 856 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SSF9 | 855 | Pentatricopeptide repeat- | yes | no | 0.974 | 0.975 | 0.671 | 0.0 | |
| Q8GYP6 | 860 | Pentatricopeptide repeat- | no | no | 0.971 | 0.967 | 0.664 | 0.0 | |
| Q9SAK0 | 836 | Pentatricopeptide repeat- | no | no | 0.510 | 0.522 | 0.281 | 3e-47 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.553 | 0.516 | 0.249 | 8e-47 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.363 | 0.379 | 0.305 | 7e-45 | |
| Q9LS25 | 711 | Pentatricopeptide repeat- | no | no | 0.579 | 0.697 | 0.241 | 2e-43 | |
| Q9SZ52 | 1112 | Pentatricopeptide repeat- | no | no | 0.508 | 0.391 | 0.270 | 3e-43 | |
| O64624 | 822 | Pentatricopeptide repeat- | no | no | 0.410 | 0.427 | 0.292 | 4e-43 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.342 | 0.463 | 0.323 | 1e-39 | |
| Q9S7Q2 | 862 | Pentatricopeptide repeat- | no | no | 0.367 | 0.365 | 0.270 | 2e-39 |
| >sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1196 bits (3093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 589/877 (67%), Positives = 689/877 (78%), Gaps = 43/877 (4%)
Query: 1 MLRAKHITNLSSTARSFFLNGSRCSASDGSSCTCSEDETCVSRRQH-NAQMVYTPARAGV 59
M+RAKHI+NLSS+ARSFFL+GSR SA+DG+SCTC+EDE+ VS+RQ ++V T RA
Sbjct: 1 MIRAKHISNLSSSARSFFLSGSRPSAADGNSCTCAEDESGVSKRQQIRTEVVQTGKRASN 60
Query: 60 VVSGEAAKAAGLQKSERVSVP-----------------SPSSLGRSDHVSYASSVDAVPK 102
+ +G A ++ + + VP SP+ G++D V++AS++ + +
Sbjct: 61 LAAGLAGSILPVEAGKPLVVPKTVEHFTRPSLLPQHVSSPALPGKADSVNHASAI--IKE 118
Query: 103 DVLTSSPISDQFVKAGVAAVCFLSDLVNYKLPALDGSGTANSPTNFMVDPTRPLSNIKPA 162
DV PI DQ KAG+ V LSD+ NYK+P DG+ P + MVDPTRP+S +K +
Sbjct: 119 DV--GVPIGDQIFKAGIGNVNLLSDIANYKIPLSDGTEVVGLPKSCMVDPTRPISGVKSS 176
Query: 163 NVKTIRRENVSKVYPNSSAESTVGSNPSTGYHNAKDKGDNSNIARRFKRVSNASNGTSLE 222
NVK IRRE+++KVYP S+ + S+P T K+ SN G S E
Sbjct: 177 NVKVIRREHLAKVYPRSADRVPINSSPGT------------------KQASNDVAGKSFE 218
Query: 223 THNVSSDN-SDRRRIVQPRSKAHSNRLNSN-FKSNLQPSDAKVVECVSERFSKPSREM-K 279
H++ S+N S +R+I+ R S R S ++ SD + + E F KPSREM K
Sbjct: 219 AHDLLSNNVSGKRKIMPQRPYTDSTRYASGGCDYSVHSSDDRTIISSVEGFGKPSREMMK 278
Query: 280 IPAGLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQVLKQLQD 339
+ AP R + G VVE+VS ILR++KWG AEEAL N + MDAYQANQVLKQ+ +
Sbjct: 279 VTPRTAPTPRQHCNPGYVVENVSSILRRFKWGHAAEEALHNFGFRMDAYQANQVLKQMDN 338
Query: 340 HTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYN 399
+ ALGFF WL+RQ GFKHD HTYTTMVG LGRA+QFG INKLLD+MVRDGC+PN VTYN
Sbjct: 339 YANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYN 398
Query: 400 RLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA 459
RLIHSYGRANYL EA++VF QMQ GCEPDRVTYCTLIDIHAKAGFLD+AMDMY++MQ A
Sbjct: 399 RLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEA 458
Query: 460 GLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSA 519
GLSPDTFTYSVIINCLGKAGHL AAH+LFCEMV QGC PNLVT+NIMIAL AKARNY++A
Sbjct: 459 GLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETA 518
Query: 520 LKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDL 579
LKLYRDMQNAGF+PDKVTYSIVMEVLGHCG+L+EAE VFAEM+RKNWVPDEPVYGLLVDL
Sbjct: 519 LKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDL 578
Query: 580 WGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS 639
WGKAGNV KAW+WY+AMLQAGLRPNVPTCNSLLS FLRV ++S+AY+LLQ ML LGL PS
Sbjct: 579 WGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPS 638
Query: 640 LQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLE 699
LQTYTLLLSCCT+ARS +DMGFC +LMAVSGHPAHMFLL MP GPDGQ VRDHV +FL+
Sbjct: 639 LQTYTLLLSCCTDARSNFDMGFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFLD 698
Query: 700 MMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLINLH 759
MHSEDRESKRGL+DAVVDFLHKSGLKEEAGSVWEVAA KNVYPDA++EK SYWLINLH
Sbjct: 699 FMHSEDRESKRGLMDAVVDFLHKSGLKEEAGSVWEVAAGKNVYPDALREKSYSYWLINLH 758
Query: 760 VMSDGTAVIALSRTLAWFRKQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLHM 819
VMS+GTAVIALSRTLAWFRKQML+SG PSRIDIVTGWGRRSRVTGTS+VRQAV+ELL++
Sbjct: 759 VMSEGTAVIALSRTLAWFRKQMLVSGDCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNI 818
Query: 820 FSFPFFTENGNSGCFVGCGEPLNKWLLQSYVDRMHLL 856
F+FPFFTENGNSGCFVG GEPL WLL+SYV+RMHLL
Sbjct: 819 FNFPFFTENGNSGCFVGSGEPLKNWLLESYVERMHLL 855
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1183 bits (3061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/884 (66%), Positives = 692/884 (78%), Gaps = 52/884 (5%)
Query: 1 MLRAKHITNLSSTARSFFLNGSRCSASDGSSCTCSEDETCVSRRQH-----------NAQ 49
M+RAKHI+NLSSTARSFFLNGSR S +DG+SC S+DE CVS+RQ +
Sbjct: 1 MIRAKHISNLSSTARSFFLNGSRTSVTDGNSCVYSDDENCVSKRQQLRKEAGQTEKRPSS 60
Query: 50 MVYTPARAGVVVSGEAAKAAGLQKSERVSVPS---------PSSLGRSDHVSYASSVDAV 100
++ P+ G ++ GE K +K + PS P+ +S V+YAS+V V
Sbjct: 61 ILPKPSVVGCILPGEVTKPVVPKKVDDFGRPSLLPQHVSSSPALPLKSHSVNYASTV--V 118
Query: 101 PKDV---LTSSPISDQFVKAGVAAVCFLSDLVNYKLPALDGSGTA-NSPTNFMVDPTRPL 156
++V +S PI DQ KAG+ AV FLSDL N K+P+ DG A P + MVDPTRP+
Sbjct: 119 REEVEGKASSEPIGDQIFKAGIVAVNFLSDLSNCKIPSYDGGSDAFGLPKSCMVDPTRPI 178
Query: 157 SNIKPANVKTIRRENVSKVYPNSSA-ESTVGS--NPSTGYHNAKDKGDNSNIARRFKRVS 213
S++K +NVK IRRE+ +K+YP S+A ES+VG+ NPS+ + AK+ + + + F++VS
Sbjct: 179 SSVKSSNVKAIRREHFAKIYPRSAAKESSVGTTRNPSSNFRGAKE-AERTGFVKGFRQVS 237
Query: 214 NASNGTSLETHNVSSDNSDRRRIVQPRSKAHSNRLNSNFKSNLQPSDAKVVECVSERFSK 273
N+ G SL T N + +R V R SNR V FS
Sbjct: 238 NSVVGKSLPTTN---NTYGKRTSVLQRPHIDSNRF------------------VPSGFSN 276
Query: 274 PSREM-KIPAGLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQ 332
S EM K P+G A SR + ++G++VE+VS +LR+++WGP AEEAL N +DAYQANQ
Sbjct: 277 SSVEMMKGPSGTALTSRQYCNSGHIVENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQ 336
Query: 333 VLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQ 392
VLKQ+ D+ ALGFF WL+RQ GFKHD HTYTTMVG LGRA+QFGAINKLLD+MVRDGCQ
Sbjct: 337 VLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQ 396
Query: 393 PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDM 452
PN VTYNRLIHSYGRANYLNEA++VF QMQ GC+PDRVTYCTLIDIHAKAGFLD+AMDM
Sbjct: 397 PNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDM 456
Query: 453 YKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK 512
Y++MQA GLSPDTFTYSVIINCLGKAGHL AAH+LFCEMV+QGC PNLVTYNIM+ L AK
Sbjct: 457 YQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAK 516
Query: 513 ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPV 572
ARNYQ+ALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYL+EAEAVF EM++KNW+PDEPV
Sbjct: 517 ARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPV 576
Query: 573 YGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGML 632
YGLLVDLWGKAGNV KAW+WY+AML AGLRPNVPTCNSLLS FLRV ++++AY LLQ ML
Sbjct: 577 YGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNML 636
Query: 633 NLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRD 692
LGL+PSLQTYTLLLSCCT+ RS DMGFC +LMA +GHPAHMFLL MP+ GPDG+NVR+
Sbjct: 637 ALGLRPSLQTYTLLLSCCTDGRSKLDMGFCGQLMASTGHPAHMFLLKMPAAGPDGENVRN 696
Query: 693 HVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMS 752
H +FL++MHSEDRESKRGLVDAVVDFLHKSG KEEAGSVWEVAAQKNV+PDA++EK S
Sbjct: 697 HANNFLDLMHSEDRESKRGLVDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCS 756
Query: 753 YWLINLHVMSDGTAVIALSRTLAWFRKQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQA 812
YWLINLHVMS+GTAV ALSRTLAWFRKQML SG PSRIDIVTGWGRRSRVTGTS+VRQA
Sbjct: 757 YWLINLHVMSEGTAVTALSRTLAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQA 816
Query: 813 VQELLHMFSFPFFTENGNSGCFVGCGEPLNKWLLQSYVDRMHLL 856
V+ELL++F PFFTE+GNSGCFVG GEPLN+WLLQS+V+RMHLL
Sbjct: 817 VEELLNIFGSPFFTESGNSGCFVGSGEPLNRWLLQSHVERMHLL 860
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490, mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 190 bits (483), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 124/440 (28%), Positives = 219/440 (49%), Gaps = 3/440 (0%)
Query: 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVF 418
D TY ++ L ++ + A KL QM +P+ ++ L+ S G+A L+ ++ V+
Sbjct: 312 DGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVY 371
Query: 419 KQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKA 478
+MQ G P + +LID +AKAG LD A+ ++ +M+ +G P+ Y++II K+
Sbjct: 372 MEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKS 431
Query: 479 GHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTY 538
G L+ A +F +M G +P TY+ ++ + A + SA+K+Y M NAG P +Y
Sbjct: 432 GKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSY 491
Query: 539 SIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQ 598
++ +L + +D A + EM+ + D +L+ ++ K +V A +W M
Sbjct: 492 ISLLTLLANKRLVDVAGKILLEMKAMGYSVDVCASDVLM-IYIKDASVDLALKWLRFMGS 550
Query: 599 AGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYD 658
+G++ N L + ++ G A LL+ +++ K L YT +L+ +
Sbjct: 551 SGIKTNNFIIRQLFESCMKNGLYDSARPLLETLVHSAGKVDLVLYTSILAHLVRCQDEDK 610
Query: 659 MGFCHELMAVSGHPAHMFLLSM-PSPGPDGQNVRDHVGSFLEMMHSEDRE-SKRGLVDAV 716
+++ + H AH F+ + P Q V V F + + E E + R V+ +
Sbjct: 611 ERQLMSILSATKHKAHAFMCGLFTGPEQRKQPVLTFVREFYQGIDYELEEGAARYFVNVL 670
Query: 717 VDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLINLHVMSDGTAVIALSRTLAW 776
+++L G A VW+VA + ++P A+ W +++ +S G A+IA+ TL
Sbjct: 671 LNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVVHTLHR 730
Query: 777 FRKQMLISGVGPSRIDIVTG 796
FRK+ML GV P RI +VTG
Sbjct: 731 FRKRMLYYGVVPRRIKLVTG 750
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (480), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 135/542 (24%), Positives = 246/542 (45%), Gaps = 68/542 (12%)
Query: 356 FKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEAL 415
+ D +Y T++ + + Q ++L QM PNVV+Y+ +I + +A +EAL
Sbjct: 370 IEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEAL 429
Query: 416 DVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCL 475
++F +M+ +G DRV+Y TL+ I+ K G + A+D+ ++M + G+ D TY+ ++
Sbjct: 430 NLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGY 489
Query: 476 GKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDK 535
GK G ++F EM + +PNL+TY+ +I +K Y+ A++++R+ ++AG D
Sbjct: 490 GKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADV 549
Query: 536 VTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEA 595
V YS +++ L G + A ++ EM ++ P+ Y ++D +G++ + ++ ++
Sbjct: 550 VLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNG 609
Query: 596 MLQAGLRPNVPTCNSLLSAFLRV---------GQLSDA-------------------YHL 627
++P +S LSA GQL+ +
Sbjct: 610 -------GSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEV 662
Query: 628 LQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHP----AHMFLLSMPSP 683
+ M L +KP++ T++ +L+ C+ S D E + + + H L+
Sbjct: 663 FRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLMGQR-- 720
Query: 684 GPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAG---------SVWE 734
+NV S + ++ D + +A+ D L G K A VWE
Sbjct: 721 ----ENVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGRSRQVWE 776
Query: 735 VAAQKNVYPDAVKEKGMSYWLINLHVMSDGTAVIALSRTLAWFRKQMLISGVGPSRIDIV 794
NV+ D+ ++LH+MS G A + L R + P + I+
Sbjct: 777 -----NVWSDSC---------LDLHLMSSGAARAMVHAWLLNIRSIVYEGHELPKVLSIL 822
Query: 795 TGWGRRSRVTGTSLVRQAVQELLHMFSFPFFTENGNSGCFVGCGEPLNKWLLQSYVDRMH 854
TGWG+ S+V G +R+AV+ LL PF N G F G + WL +S ++
Sbjct: 823 TGWGKHSKVVGDGALRRAVEVLLRGMDAPFHLSKCNMGRFTSSGSVVATWLRESATLKLL 882
Query: 855 LL 856
+L
Sbjct: 883 IL 884
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (464), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 162/314 (51%), Gaps = 3/314 (0%)
Query: 352 RQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYL 411
+ G D +TY T++ R ++ ++M G + VTYN L+ YG+++
Sbjct: 271 KSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRP 330
Query: 412 NEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVI 471
EA+ V +M + G P VTY +LI +A+ G LD AM++ +M G PD FTY+ +
Sbjct: 331 KEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTL 390
Query: 472 INCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGF 531
++ +AG +++A +F EM N GC PN+ T+N I + + +K++ ++ G
Sbjct: 391 LSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGL 450
Query: 532 EPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWE 591
PD VT++ ++ V G G E VF EM+R +VP+ + L+ + + G+ +A
Sbjct: 451 SPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMT 510
Query: 592 WYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCT 651
Y ML AG+ P++ T N++L+A R G + +L M + KP+ TY LL
Sbjct: 511 VYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYA 570
Query: 652 EARSPYDMGFCHEL 665
+ ++G H L
Sbjct: 571 NGK---EIGLMHSL 581
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 135/558 (24%), Positives = 245/558 (43%), Gaps = 62/558 (11%)
Query: 333 VLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQ 392
VL L++ FFNW++ ++ F + Y + L RQF I ++ +MV+DG +
Sbjct: 159 VLNSLREWQKTHTFFNWVKSKSLFPMETIFYNVTMKSLRFGRQFQLIEEMALEMVKDGVE 218
Query: 393 PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDM 452
+ +TY+ +I R N N+A++ F++M G PD VTY ++D+++K+G ++ + +
Sbjct: 219 LDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSL 278
Query: 453 YKKMQAAGLSPDTFTYSVI-----------------------------------INCLGK 477
Y++ A G PD +SV+ + +G+
Sbjct: 279 YERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGR 338
Query: 478 AGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVT 537
AG A LF EM+ G PN T ++ + KAR + AL+L+ +M+ + D +
Sbjct: 339 AGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFIL 398
Query: 538 YSIVMEVLGHCGYLDEAEAVFAEMRRK-NWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAM 596
Y+ ++ + G +EAE +F +M+ PD Y +++++G G KA E +E M
Sbjct: 399 YNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAEKAMELFEEM 458
Query: 597 LQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSP 656
L+AG++ NV C L+ + ++ D ++ + G+KP + LLS S
Sbjct: 459 LKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRLCGCLLSVMALCESS 518
Query: 657 YDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAV 716
D + + F+ + + + V++ F ++++ E++R + +
Sbjct: 519 EDAEKVMACLERANKKLVTFVNLIVDEKTEYETVKEE---FKLVINATQVEARRPFCNCL 575
Query: 717 VDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLINLHVMSDGTAVIALS---RT 773
+D + E A + + +YP + K + W +++ +S G A AL RT
Sbjct: 576 IDICRGNNRHERAHELLYLGTLFGLYP-GLHNKTIKEWSLDVRSLSVGAAETALEEWMRT 634
Query: 774 LAWFRK------QMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLHMFSFPFFTE 827
LA K ++ ++ G TG R S+ S L S P F +
Sbjct: 635 LANIIKRQEELPELFLAQTG-------TGTHRFSQGLANSFALH-----LQQLSAP-FRQ 681
Query: 828 NGNSGCFVGCGEPLNKWL 845
+ G FV E L WL
Sbjct: 682 SDRPGIFVATKEDLVSWL 699
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 120/443 (27%), Positives = 210/443 (47%), Gaps = 8/443 (1%)
Query: 309 KWGPLAEEALGNTNYSMDAYQANQVLKQLQDHTVALGFFNWLRRQA--GFKHDEHTYTTM 366
K P A + + ++AY N ++ L RR GF+ TY+++
Sbjct: 170 KQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSL 229
Query: 367 VGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGC 426
+ LG+ R ++ LL +M G +PNV T+ I GRA +NEA ++ K+M GC
Sbjct: 230 MVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGC 289
Query: 427 EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQ 486
PD VTY LID A LD A ++++KM+ PD TY +++ L + Q
Sbjct: 290 GPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQ 349
Query: 487 LFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLG 546
+ EM G +P++VT+ I++ KA N+ A M++ G P+ TY+ ++ L
Sbjct: 350 FWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLL 409
Query: 547 HCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVP 606
LD+A +F M P Y + +D +GK+G+ A E +E M G+ PN+
Sbjct: 410 RVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIV 469
Query: 607 TCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYD-MGFCHEL 665
CN+ L + + G+ +A + G+ ++GL P TY +++ C ++ + + E+
Sbjct: 470 ACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEM 529
Query: 666 MAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLV--DAVVDFLHKS 723
M P + + S+ + V + F+ M ++ + K +V + ++ L K+
Sbjct: 530 MENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRM---KEMKLKPTVVTYNTLLAGLGKN 586
Query: 724 GLKEEAGSVWEVAAQKNVYPDAV 746
G +EA ++E QK P+ +
Sbjct: 587 GKIQEAIELFEGMVQKGCPPNTI 609
|
Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (448), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/359 (29%), Positives = 175/359 (48%), Gaps = 8/359 (2%)
Query: 291 FASTGNVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQVLKQLQDHTVALGFFNWL 350
++ TG +++ R + GP L N +D + K + LG + +
Sbjct: 220 YSRTGKYEKAIDLFERMKEMGP--SPTLVTYNVILDVFG-----KMGRSWRKILGVLDEM 272
Query: 351 RRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANY 410
R + G K DE T +T++ R + ++ G +P VTYN L+ +G+A
Sbjct: 273 RSK-GLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGV 331
Query: 411 LNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSV 470
EAL V K+M+ C D VTY L+ + +AGF A + + M G+ P+ TY+
Sbjct: 332 YTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTT 391
Query: 471 IINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAG 530
+I+ GKAG A +LF M GC+PN TYN +++L K +K+ DM++ G
Sbjct: 392 VIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNG 451
Query: 531 FEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAW 590
P++ T++ ++ + G+ G VF EM+ + PD + L+ +G+ G+ A
Sbjct: 452 CSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDAS 511
Query: 591 EWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSC 649
+ Y M +AG V T N+LL+A R G +++ M + G KP+ +Y+L+L C
Sbjct: 512 KMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQC 570
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 159/297 (53%), Gaps = 4/297 (1%)
Query: 353 QAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLN 412
+ G+K D T+TT++ L + L+DQMV+ GCQP++VTY +++ + ++
Sbjct: 181 EMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDID 240
Query: 413 EALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVII 472
AL + K+M+ E D V Y T+ID K +D A++++ +M G+ PD FTYS +I
Sbjct: 241 LALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLI 300
Query: 473 NCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFE 532
+CL G A +L +M+ + PN+VT++ +I K A KLY +M +
Sbjct: 301 SCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 360
Query: 533 PDKVTYSIVMEVLGHCGY--LDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAW 590
PD TYS ++ G C + LDEA+ +F M K+ P+ Y L+ + KA V +
Sbjct: 361 PDIFTYSSLIN--GFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGM 418
Query: 591 EWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLL 647
E + M Q GL N T +L+ F + +A + + M+++G+ P++ TY +LL
Sbjct: 419 ELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILL 475
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 168/351 (47%), Gaps = 36/351 (10%)
Query: 339 DHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTY 398
D +L F +++RQ K +EH YT M+ +LGR ++ D+M G +V +Y
Sbjct: 120 DWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSY 179
Query: 399 NRLIHSYGRANYLNEALDV------------------------------------FKQMQ 422
LI++YGR +L++ F +M+
Sbjct: 180 TALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMR 239
Query: 423 VVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQ 482
G +PD VTY TL+ A G D A +++ M G+ PD TYS ++ GK L+
Sbjct: 240 HEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLE 299
Query: 483 AAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVM 542
L EM + G +P++ +YN+++ AK+ + + A+ ++ MQ AG P+ TYS+++
Sbjct: 300 KVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLL 359
Query: 543 EVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLR 602
+ G G D+ +F EM+ N PD Y +L++++G+ G ++ + M++ +
Sbjct: 360 NLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIE 419
Query: 603 PNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEA 653
P++ T ++ A + G DA +LQ M + PS + YT ++ +A
Sbjct: 420 PDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQA 470
|
Involved in plastid gene expression. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 856 | ||||||
| 255540881 | 876 | pentatricopeptide repeat-containing prot | 0.996 | 0.973 | 0.737 | 0.0 | |
| 224133318 | 834 | predicted protein [Populus trichocarpa] | 0.968 | 0.994 | 0.730 | 0.0 | |
| 225456631 | 875 | PREDICTED: pentatricopeptide repeat-cont | 0.997 | 0.976 | 0.700 | 0.0 | |
| 356508608 | 879 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.972 | 0.685 | 0.0 | |
| 356516744 | 882 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.969 | 0.679 | 0.0 | |
| 15221377 | 855 | pentatricopeptide repeat-containing prot | 0.974 | 0.975 | 0.671 | 0.0 | |
| 15221893 | 860 | pentatricopeptide repeat-containing prot | 0.971 | 0.967 | 0.664 | 0.0 | |
| 449440748 | 874 | PREDICTED: pentatricopeptide repeat-cont | 0.994 | 0.973 | 0.658 | 0.0 | |
| 8778269 | 977 | F14D16.2 [Arabidopsis thaliana] | 0.971 | 0.851 | 0.664 | 0.0 | |
| 297839351 | 845 | pentatricopeptide repeat-containing prot | 0.960 | 0.972 | 0.666 | 0.0 |
| >gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1338 bits (3463), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 648/879 (73%), Positives = 726/879 (82%), Gaps = 26/879 (2%)
Query: 1 MLRAKHITNLSSTARSFFLNGSRCSASDGSSCTCSEDETCVSRRQHNAQMVYTPARAGVV 60
MLRAK ++NLSS ARSFFL+GSRCS SDGSSCTCSEDE+C+ RRQ R +
Sbjct: 1 MLRAKQLSNLSSNARSFFLSGSRCSTSDGSSCTCSEDESCLPRRQQTRNNAVLAQRGPAL 60
Query: 61 VS------------GEAAKAAGLQKSERVSVPS-------PSSLGRSDHVSYASSVDAVP 101
V G+A K K E V P+ P S+ +SD VSYAS +DAV
Sbjct: 61 VPKASARVSQTSLLGDAGKLLVPHKVESVECPTLPQVVSAPISIRKSDCVSYASGIDAVE 120
Query: 102 KDV-LTSSPISDQFVKAGVAAVCFLSDLVNYKLPALDGSGTANSPTNFMVDPTRPLSNIK 160
D+ +S PISDQF KAG+AAV FLSDLVNYKLP DGSG NSP N MVDPTRP S ++
Sbjct: 121 NDIPYSSPPISDQFFKAGIAAVSFLSDLVNYKLPITDGSGI-NSPKNCMVDPTRPQSTVR 179
Query: 161 PANVKTIRRENVSKVYPNSSAESTVGSNPSTGYHNAKDKGDNSNIARRFKRVSNASNGTS 220
+NVK IRREN SKVYP +S E+ V S+ ++ Y + +DK + S+ + KRVSN G S
Sbjct: 180 SSNVKPIRRENCSKVYPKASPEAAVSSS-TSNYDSTRDKSEKSSFIKGSKRVSNTPAGNS 238
Query: 221 LETHNVSSDNSDRRRIVQPRSKAHSNRLNSNFKSNLQP---SDAKVVECVSERFSKPSRE 277
++T +++SD DRR I Q +SK SNR +NF +N+Q SD K E V+E + KP RE
Sbjct: 239 VKTCSIASDTCDRRIIPQ-KSKGQSNRSTANFNANVQTVQTSDTKYGEYVAEDYRKPPRE 297
Query: 278 MKIPAGLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQVLKQL 337
K+P P +R FAS G++VE+V+ ILRQ +WGP AEEAL N NYSMD YQANQVLKQL
Sbjct: 298 TKMPVVRVPSTRRFASNGHIVENVAHILRQIRWGPAAEEALANLNYSMDPYQANQVLKQL 357
Query: 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVT 397
QDHTVAL FF WL+RQ GF HD HTYTTMVGILGRA+QFGAINKLLDQMV+DGCQPNVVT
Sbjct: 358 QDHTVALNFFYWLKRQPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVT 417
Query: 398 YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQ 457
YNRLIHSYGRANYLN+A+DVF +MQ VGCEPDRVTYCTLIDIHAKAGFLD A++MY++MQ
Sbjct: 418 YNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQ 477
Query: 458 AAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQ 517
AAGLSPDTFTYSVIINCLGKAGHL AAH+LFCEMV QGC+PNLVTYNIMIALQAKARNYQ
Sbjct: 478 AAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQ 537
Query: 518 SALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLV 577
SALKLYRDMQ+AGF+PDKVTYSIVMEVLGHCGYLDEAEAVF+EM+RKNWVPDEPVYGLLV
Sbjct: 538 SALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDEPVYGLLV 597
Query: 578 DLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLK 637
DLWGKAGNV KAW+WY+ ML GLRPNVPTCNSLLSAFLRV +L+DAY+LLQ ML LGL
Sbjct: 598 DLWGKAGNVEKAWQWYQTMLNTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQSMLELGLN 657
Query: 638 PSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSF 697
PSLQTYTLLLSCCTEARSPYDMG ELMAV+GHPAHMFLLS+PS GPDGQNVRDH F
Sbjct: 658 PSLQTYTLLLSCCTEARSPYDMGIYCELMAVTGHPAHMFLLSLPSAGPDGQNVRDHASKF 717
Query: 698 LEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLIN 757
L++MHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQ+NVYPDAVKEKG YWLIN
Sbjct: 718 LDLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQRNVYPDAVKEKGSCYWLIN 777
Query: 758 LHVMSDGTAVIALSRTLAWFRKQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELL 817
LHVMSDGTAV ALSRTLAWFR+QML+SG+ PSRIDIVTGWGRRSRVTG+S+VRQAVQELL
Sbjct: 778 LHVMSDGTAVTALSRTLAWFRQQMLVSGISPSRIDIVTGWGRRSRVTGSSMVRQAVQELL 837
Query: 818 HMFSFPFFTENGNSGCFVGCGEPLNKWLLQSYVDRMHLL 856
H+FSFPFFTENGNSGCFVGCGEPLN+WLLQ YVDRMHLL
Sbjct: 838 HIFSFPFFTENGNSGCFVGCGEPLNRWLLQPYVDRMHLL 876
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa] gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1285 bits (3325), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 629/861 (73%), Positives = 709/861 (82%), Gaps = 32/861 (3%)
Query: 1 MLRAKHITNLSSTARSFFLNGSRCSASDGSS-CTCSEDETCVSRRQH---NAQMVYTPAR 56
MLRAK + NLSS+ARSFFL+GSRCSA+DGSS CTCSEDETCVS RQ + + P+
Sbjct: 1 MLRAKQLGNLSSSARSFFLSGSRCSATDGSSSCTCSEDETCVSTRQQPRNSILLAQKPSN 60
Query: 57 AGVVVSGEAAKAAGLQKSERVSVPSPSSLGRSDHVSYASSVDAVPKDVLTSSP-ISDQFV 115
G S + S + +P SS G S VSYA +D KDV SSP ISDQFV
Sbjct: 61 FGSKTSARVEASVSGDGSSFL-LPQKSSCGMSGCVSYAIGIDIAEKDVGHSSPPISDQFV 119
Query: 116 KAGVAAVCFLSDLVNYKLPALDGSGTANSPTNFMVDPTRPLSNIKPANVKTIRRENVSKV 175
+ G+AAV FLSDLVNYKLP DG+ NS N M+DPTR LSNIK +NVK IRREN +K
Sbjct: 120 RVGIAAVSFLSDLVNYKLPTSDGT-VINSTINCMIDPTRQLSNIKSSNVKPIRRENFTKA 178
Query: 176 YPNSSAESTVGSNPSTGYHNAKDKGDNSNIARRFKRVSNASNGTSLETHNVSSDNSDRRR 235
YPNSSAE VGSN + Y++ KD+G+ S+ R FK+VS+ + +SL++H++ SD D+RR
Sbjct: 179 YPNSSAEIPVGSNAAVNYNSMKDRGNKSSFVRGFKQVSSIAADSSLDSHSLPSDAFDKRR 238
Query: 236 IVQPRSKAHSNRLNSNFKSNLQPSDAKVVECVSERFSKPSREMKIPAGLAPFSRHFASTG 295
+ R KA NR +PSR+ K+PA +A +R F STG
Sbjct: 239 TIPQRLKAQPNR-------------------------RPSRDTKMPAVVARSARQFVSTG 273
Query: 296 NVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQVLKQLQDHTVALGFFNWLRRQAG 355
+VVE+VS+ILRQ +WGP AEEAL N N MDAYQANQVLKQLQDHTVALGFF+WL++ G
Sbjct: 274 HVVENVSQILRQLRWGPSAEEALVNLNCHMDAYQANQVLKQLQDHTVALGFFHWLKQLPG 333
Query: 356 FKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEAL 415
FKHD +TYTTMVGILGRA+QF AINKLLDQMVRDGCQP VVTYNRLIHSYGRANYLN+A+
Sbjct: 334 FKHDGYTYTTMVGILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAV 393
Query: 416 DVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCL 475
+VF QMQ GCEPDRVTYCTLIDIHAKAGFL+ AM+MY++MQAAGLSPDTFTYSV+INCL
Sbjct: 394 EVFNQMQKAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCL 453
Query: 476 GKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDK 535
GKAGHL AA +LFCEM+ QGC+PNLVTYNIMIALQAKARNYQ+ALKLYRDMQNAGFEPDK
Sbjct: 454 GKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARNYQNALKLYRDMQNAGFEPDK 513
Query: 536 VTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEA 595
VTYSIVMEVLGH GYLDEAEA+F+EM+RKNWVPDEPVYGLLVDLWGKAGNV KAWEWY+A
Sbjct: 514 VTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWEWYQA 573
Query: 596 MLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARS 655
ML AGL PNVPTCNSLLSAFLRV +L DAY+LLQ MLNLGL PSLQTYTLLLSCCTEARS
Sbjct: 574 MLHAGLCPNVPTCNSLLSAFLRVNRLPDAYNLLQSMLNLGLNPSLQTYTLLLSCCTEARS 633
Query: 656 PYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDA 715
PYDMG ELM+V+GHPAHMFL S+PS GPDGQNVR HV FL+MMHSEDRESKRGLVDA
Sbjct: 634 PYDMGCYCELMSVTGHPAHMFLSSLPSAGPDGQNVRHHVSKFLDMMHSEDRESKRGLVDA 693
Query: 716 VVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLINLHVMSDGTAVIALSRTLA 775
VVDFLHKSGLKEEAGSVWE+AAQ+NVYPDAVKEK YWLINLHVMS+GTAV ALSRTLA
Sbjct: 694 VVDFLHKSGLKEEAGSVWEIAAQRNVYPDAVKEKSSCYWLINLHVMSEGTAVTALSRTLA 753
Query: 776 WFRKQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLHMFSFPFFTENGNSGCFV 835
WFR+QML+SGV PSRIDIVTGWGRRSRVTG+SLVRQAVQELLH+FSFPFFTENGN+GCFV
Sbjct: 754 WFRRQMLVSGVIPSRIDIVTGWGRRSRVTGSSLVRQAVQELLHIFSFPFFTENGNTGCFV 813
Query: 836 GCGEPLNKWLLQSYVDRMHLL 856
GCGEPL++WLLQSYV+RMHLL
Sbjct: 814 GCGEPLSRWLLQSYVERMHLL 834
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1242 bits (3214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 614/877 (70%), Positives = 696/877 (79%), Gaps = 23/877 (2%)
Query: 1 MLRAKHITNLSSTARSFFLNGSRCSASDGSSCTCSEDETCVSRRQHNAQMVY-------- 52
MLR K I LS++ARS ++G+R S DG+SC CSEDETCVS +QH V
Sbjct: 1 MLRTKQIGPLSNSARSILISGTRSSTPDGNSCPCSEDETCVSTKQHARNEVLIMQKQTTL 60
Query: 53 ---TPARAGVVVSGEAAKAAGLQKSERVS--------VPSPSSLGRSDHVSYASSVDAVP 101
T AR G + G+A K G QK E V V +P S+ SD VSY S V
Sbjct: 61 ASKTAARVGPLFLGDAVKVVGSQKVESVEHATSLAQVVAAPRSVVGSDCVSYVSDNVGVN 120
Query: 102 KDVLTSSPISDQFVKAGVAAVCFLSDLVNYKLPALDGSGTANSPTNFMVDPTRPLSNIKP 161
D + + PISDQF++AG+ AV FLSDLVNYK+P DGSG P N MVDPT+PLS IK
Sbjct: 121 NDAVHAPPISDQFIRAGIVAVNFLSDLVNYKIPMSDGSGMLKLPQNCMVDPTKPLSKIKS 180
Query: 162 ANVKTIRRENVSKVYPNSSAESTVGSNPSTGYHNAKDKGDNSNIARRFKRVSNASNGTSL 221
N+K IR+ SKV SSA SN ++ YH+ + KGD S + V + ++
Sbjct: 181 TNIKPIRKGKFSKVRAESSANIAAASNSTSSYHSTRGKGDKSGSVKGCSHVGDTWTRNTV 240
Query: 222 ETHNVSSDNSDRRRIVQPRSKAHSNRLNSNFKSNLQPS--DAKVVECVSERFSKPSREMK 279
+T ++SSD ++R + Q +SKA+SN SN N + + V ++ FSKP R+ K
Sbjct: 241 DTRSLSSDTHNKRSMPQ-KSKAYSNYSTSNSNFNSNVRNSEPRFVGGIAGGFSKPLRDTK 299
Query: 280 IPAGLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQVLKQLQD 339
+ G+AP SR F S+G+VVE+VSRILRQ WGP AEEAL N N MDAYQANQVLKQ+QD
Sbjct: 300 M-IGIAPVSRQFGSSGHVVENVSRILRQLSWGPAAEEALRNLNCLMDAYQANQVLKQIQD 358
Query: 340 HTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYN 399
H VALGFF WL+RQ GFKHD HTYTTMVGILGRARQFGAINKLL +MVRDGCQPNVVTYN
Sbjct: 359 HPVALGFFYWLKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYN 418
Query: 400 RLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA 459
RLIHSYGRANYLNEA+ VF +MQ GC+PDRVTYCTLIDIHAKAGFLDVA+ MY+KMQ A
Sbjct: 419 RLIHSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEA 478
Query: 460 GLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSA 519
LSPDTFTYSVIINCLGKAGHL +AH+LFCEMV+QGC+PNLVTYNIMIALQAKARNY +A
Sbjct: 479 HLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTA 538
Query: 520 LKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDL 579
L+LYRDMQNAGF+PDKVTYSIVMEVLGHCG+L+EAEA+F EM+RKNWVPDEPVYGLLVDL
Sbjct: 539 LELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDL 598
Query: 580 WGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS 639
WGK GNV K+WEWY+AML AGL PNVPTCNSLLSAFLRV +LSDAY+LLQ ML LGL+PS
Sbjct: 599 WGKVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPS 658
Query: 640 LQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLE 699
LQTYTLLLSCCTEARS +DMGFC ELMAV+GHPAHMFLLSMP+ GPDGQNVRDHV FL+
Sbjct: 659 LQTYTLLLSCCTEARSSFDMGFCGELMAVTGHPAHMFLLSMPAAGPDGQNVRDHVSKFLD 718
Query: 700 MMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLINLH 759
+MHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAV+EK YWLINLH
Sbjct: 719 LMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVREKSSCYWLINLH 778
Query: 760 VMSDGTAVIALSRTLAWFRKQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLHM 819
MSDGTAV ALSRTLAWF ++ML+SG PSRIDIVTGWGRRSRVTG SLVRQAVQELLH+
Sbjct: 779 FMSDGTAVTALSRTLAWFHREMLVSGTVPSRIDIVTGWGRRSRVTGASLVRQAVQELLHI 838
Query: 820 FSFPFFTENGNSGCFVGCGEPLNKWLLQSYVDRMHLL 856
FSFPFFTENGNSGCFVG GEPL +WLLQSYV+RMHLL
Sbjct: 839 FSFPFFTENGNSGCFVGRGEPLGRWLLQSYVERMHLL 875
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein At1g18900-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1241 bits (3210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/880 (68%), Positives = 705/880 (80%), Gaps = 25/880 (2%)
Query: 1 MLRAKHITN-LSSTARSFFLNGSRCSASDGSSCTCSEDETCVSRRQ---HNAQMVY---- 52
MLRAK I++ LSS ARS L GSRC+A+DG+SCTC EDETCVS+RQ +N ++
Sbjct: 1 MLRAKQISSTLSSNARSILLGGSRCNAADGNSCTCPEDETCVSKRQQRKNNEDLLALKPP 60
Query: 53 ------TPARAGVVVSGEAA------KAAGLQKSERVSVPSPSSLG--RSDHVSYASSVD 98
T G +VSG A KA + +S RV P+S +SD + A VD
Sbjct: 61 SLVSKATSQVVGTLVSGNLANGPASHKAGSVGQSGRVQQVQPTSYAPSKSDSATSACVVD 120
Query: 99 AVPKDVLTSSPI-SDQFVKAGVAAVCFLSDLVNYKLPALDGSGTANSPTNFMVDPTRPLS 157
V V SS + +DQF +AG+AAV F+SD+VNYKLP DG G N N+MVDP R L
Sbjct: 121 GVQDHVAHSSSLNADQFYRAGIAAVNFISDVVNYKLPLSDGMGILNYSKNYMVDPARALP 180
Query: 158 NIKPANVKTIRRENVSKVYPNSSAESTVG-SNPSTGYHNAKDKGDNSNIARRFKRVSNAS 216
I+ +NV+ I++EN + V+P + G S + +H AK K D SN+A+ FK V+++
Sbjct: 181 KIRSSNVQQIKKENFTAVHPKPPVPTHPGPSKHTNNHHGAKGKADKSNLAKGFKHVASSG 240
Query: 217 NGTSLETHNVSSDNSDRRRIVQPRSKAHSNRLNSNFKSNLQPSDAKVVECVSERFSKPSR 276
S N+ +N DRR + Q R++ HSN +NF SN+Q S+ ++ E F+K +R
Sbjct: 241 TEKSGAAPNIPVNNHDRRALPQ-RTRTHSNHFVANFGSNMQSSNPQMAGPFKESFNKHTR 299
Query: 277 EMKIPAGLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQVLKQ 336
++ +PAG+ P RHF ++G+VVE V IL+Q +WGP E+ L N N+S+DAYQANQ+LKQ
Sbjct: 300 DLNMPAGIVPTKRHFTNSGHVVEVVKDILKQLRWGPATEKTLYNLNFSIDAYQANQILKQ 359
Query: 337 LQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVV 396
LQDH+VA+GFF WL+RQ GF HD HTYTTMVGILGRAR+FGAINKLL+QMV+DGCQPNVV
Sbjct: 360 LQDHSVAVGFFCWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVV 419
Query: 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKM 456
TYNRLIHSYGRANYL EAL+VF QMQ +GCEPDRVTYCTLIDIHAKAGFLDVAM MY++M
Sbjct: 420 TYNRLIHSYGRANYLREALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERM 479
Query: 457 QAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNY 516
Q GLSPDTFTYSV+INCLGK+G+L AAH+LFCEMV+QGC+PN+VTYNI+IALQAKARNY
Sbjct: 480 QEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNY 539
Query: 517 QSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLL 576
Q+AL+LYRDMQNAGF+PDKVTYSIVMEVLGHCGYL+EAEAVF EMR+ +WVPDEPVYGLL
Sbjct: 540 QTALELYRDMQNAGFKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQNHWVPDEPVYGLL 599
Query: 577 VDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGL 636
VDLWGKAGNV KAWEWY ML+AGL PNVPTCNSLLSAFLRV +L DAY+LLQ M+ LGL
Sbjct: 600 VDLWGKAGNVEKAWEWYHTMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGL 659
Query: 637 KPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGS 696
PSLQTYTLLLSCCTEA+SPYDMGFC ELMAVSGHPAH FL SMP+ GPDGQNVRDHV
Sbjct: 660 NPSLQTYTLLLSCCTEAQSPYDMGFCCELMAVSGHPAHAFLQSMPAAGPDGQNVRDHVSK 719
Query: 697 FLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLI 756
FL++MHSEDRE KRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEK YWLI
Sbjct: 720 FLDLMHSEDREGKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKSTCYWLI 779
Query: 757 NLHVMSDGTAVIALSRTLAWFRKQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQEL 816
NLHVMSDGTAV ALSRTLAWFR+QML SGVGP+RIDIVTGWGRRSRVTG+SLVRQAVQEL
Sbjct: 780 NLHVMSDGTAVTALSRTLAWFRRQMLASGVGPNRIDIVTGWGRRSRVTGSSLVRQAVQEL 839
Query: 817 LHMFSFPFFTENGNSGCFVGCGEPLNKWLLQSYVDRMHLL 856
LH+FSFPFFTEN NSGCFVGCGEPL++WL+ SYV+RMHLL
Sbjct: 840 LHVFSFPFFTENSNSGCFVGCGEPLSQWLVHSYVERMHLL 879
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein At1g18900-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1226 bits (3173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/880 (67%), Positives = 702/880 (79%), Gaps = 25/880 (2%)
Query: 1 MLRAKHITN-LSSTARSFFLNGSRCSASDGSSCTCSEDETCVSRRQH--NAQMVYTPAR- 56
MLRAK I++ LSS ARS L+GSRC+A+DG+SC C EDETCVS+RQ N + + P
Sbjct: 4 MLRAKAISSTLSSNARSILLSGSRCNAADGNSCNCPEDETCVSKRQQRKNNEDLLAPKPP 63
Query: 57 ----------AGVVVSGEAAKA------AGLQKSERVSVPSPSSLG--RSDHVSYASSVD 98
G +VSG A + +S V P+S +S+ V+ A VD
Sbjct: 64 SLVSKATSQVVGTLVSGNLANGPASHNVGSVGQSGCVQKVRPTSYAPSKSESVTSACVVD 123
Query: 99 AVPKDVLTSSPI-SDQFVKAGVAAVCFLSDLVNYKLPALDGSGTANSPTNFMVDPTRPLS 157
V + V SS + +DQF +AG+AAV F+SD+VNYKLP DG G N N MVDP R L
Sbjct: 124 GVQEHVAHSSSLNADQFYRAGIAAVNFISDVVNYKLPLSDGMGILNYSKNCMVDPARALP 183
Query: 158 NIKPANVKTIRRENVSKVYPNSSAESTVG-SNPSTGYHNAKDKGDNSNIARRFKRVSNAS 216
I+ +NV+ IR EN + V+P + G S + H AK K + SN+A+ FK V+ +
Sbjct: 184 KIRSSNVQQIRTENFTSVHPKPPVPAHPGPSKHTNNNHGAKGKANKSNLAKGFKYVAASG 243
Query: 217 NGTSLETHNVSSDNSDRRRIVQPRSKAHSNRLNSNFKSNLQPSDAKVVECVSERFSKPSR 276
S N+ +N DRR + Q R++ +SN +NF SN+Q S+ ++ E F+K +R
Sbjct: 244 TEKSGAAPNIPVNNHDRRALPQ-RTRTNSNHFVTNFGSNMQSSNPQMARPFKESFNKHTR 302
Query: 277 EMKIPAGLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQVLKQ 336
++ +PAG+AP RHF ++G+VVE V IL+Q +WGP E+AL N N+S+DAYQANQ+LKQ
Sbjct: 303 DLNMPAGIAPTRRHFTNSGHVVEGVKDILKQLRWGPATEKALYNLNFSIDAYQANQILKQ 362
Query: 337 LQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVV 396
LQDH+VAL FF WL+RQ GF HD HTYTTMVGILGRAR+FGAINKLL+QMV+DGCQPNVV
Sbjct: 363 LQDHSVALSFFYWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVV 422
Query: 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKM 456
TYNRLIHSYGRANYL EAL+VF QMQ +GCEPDRVTYCTLIDIHAKAGFLDVAM MY++M
Sbjct: 423 TYNRLIHSYGRANYLGEALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERM 482
Query: 457 QAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNY 516
Q GLSPDTFTYSV+INCLGK+G+L AAH+LFCEMV+QGC+PN+VTYNI+IALQAKARNY
Sbjct: 483 QEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNY 542
Query: 517 QSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLL 576
Q+ALKLYRDMQNAGF+PDKVTYSIVMEVLG+CGYL+EAEAVF EM++ NWVPDEPVYGLL
Sbjct: 543 QTALKLYRDMQNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLL 602
Query: 577 VDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGL 636
+DLWGKAGNV KAWEWY AML+AGL PNVPTCNSLLSAFLRV +L DAY+LLQ M+ LGL
Sbjct: 603 IDLWGKAGNVEKAWEWYHAMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGL 662
Query: 637 KPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGS 696
PSLQTYTLLLSCCTEA+SPYDMGFC ELMAVSGHPAH FL SMP+ GPDGQNVRDHV
Sbjct: 663 NPSLQTYTLLLSCCTEAQSPYDMGFCCELMAVSGHPAHAFLQSMPAAGPDGQNVRDHVSK 722
Query: 697 FLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLI 756
FL++MHSEDRE KRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDA++EK YWLI
Sbjct: 723 FLDLMHSEDREGKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAIREKSTCYWLI 782
Query: 757 NLHVMSDGTAVIALSRTLAWFRKQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQEL 816
NLHVMSDGTAV ALSRTLAWFR+QML SGVGP+RIDI+TGWGRRSRVTG+SLVRQAVQEL
Sbjct: 783 NLHVMSDGTAVTALSRTLAWFRRQMLASGVGPNRIDIITGWGRRSRVTGSSLVRQAVQEL 842
Query: 817 LHMFSFPFFTENGNSGCFVGCGEPLNKWLLQSYVDRMHLL 856
LH+FSFPFFTENGNSGCFVGCGEPL++WL+ SYV+RMHLL
Sbjct: 843 LHVFSFPFFTENGNSGCFVGCGEPLSQWLVHSYVERMHLL 882
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750 gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana] gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1196 bits (3093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 589/877 (67%), Positives = 689/877 (78%), Gaps = 43/877 (4%)
Query: 1 MLRAKHITNLSSTARSFFLNGSRCSASDGSSCTCSEDETCVSRRQH-NAQMVYTPARAGV 59
M+RAKHI+NLSS+ARSFFL+GSR SA+DG+SCTC+EDE+ VS+RQ ++V T RA
Sbjct: 1 MIRAKHISNLSSSARSFFLSGSRPSAADGNSCTCAEDESGVSKRQQIRTEVVQTGKRASN 60
Query: 60 VVSGEAAKAAGLQKSERVSVP-----------------SPSSLGRSDHVSYASSVDAVPK 102
+ +G A ++ + + VP SP+ G++D V++AS++ + +
Sbjct: 61 LAAGLAGSILPVEAGKPLVVPKTVEHFTRPSLLPQHVSSPALPGKADSVNHASAI--IKE 118
Query: 103 DVLTSSPISDQFVKAGVAAVCFLSDLVNYKLPALDGSGTANSPTNFMVDPTRPLSNIKPA 162
DV PI DQ KAG+ V LSD+ NYK+P DG+ P + MVDPTRP+S +K +
Sbjct: 119 DV--GVPIGDQIFKAGIGNVNLLSDIANYKIPLSDGTEVVGLPKSCMVDPTRPISGVKSS 176
Query: 163 NVKTIRRENVSKVYPNSSAESTVGSNPSTGYHNAKDKGDNSNIARRFKRVSNASNGTSLE 222
NVK IRRE+++KVYP S+ + S+P T K+ SN G S E
Sbjct: 177 NVKVIRREHLAKVYPRSADRVPINSSPGT------------------KQASNDVAGKSFE 218
Query: 223 THNVSSDN-SDRRRIVQPRSKAHSNRLNSN-FKSNLQPSDAKVVECVSERFSKPSREM-K 279
H++ S+N S +R+I+ R S R S ++ SD + + E F KPSREM K
Sbjct: 219 AHDLLSNNVSGKRKIMPQRPYTDSTRYASGGCDYSVHSSDDRTIISSVEGFGKPSREMMK 278
Query: 280 IPAGLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQVLKQLQD 339
+ AP R + G VVE+VS ILR++KWG AEEAL N + MDAYQANQVLKQ+ +
Sbjct: 279 VTPRTAPTPRQHCNPGYVVENVSSILRRFKWGHAAEEALHNFGFRMDAYQANQVLKQMDN 338
Query: 340 HTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYN 399
+ ALGFF WL+RQ GFKHD HTYTTMVG LGRA+QFG INKLLD+MVRDGC+PN VTYN
Sbjct: 339 YANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYN 398
Query: 400 RLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA 459
RLIHSYGRANYL EA++VF QMQ GCEPDRVTYCTLIDIHAKAGFLD+AMDMY++MQ A
Sbjct: 399 RLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEA 458
Query: 460 GLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSA 519
GLSPDTFTYSVIINCLGKAGHL AAH+LFCEMV QGC PNLVT+NIMIAL AKARNY++A
Sbjct: 459 GLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETA 518
Query: 520 LKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDL 579
LKLYRDMQNAGF+PDKVTYSIVMEVLGHCG+L+EAE VFAEM+RKNWVPDEPVYGLLVDL
Sbjct: 519 LKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDL 578
Query: 580 WGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS 639
WGKAGNV KAW+WY+AMLQAGLRPNVPTCNSLLS FLRV ++S+AY+LLQ ML LGL PS
Sbjct: 579 WGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPS 638
Query: 640 LQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLE 699
LQTYTLLLSCCT+ARS +DMGFC +LMAVSGHPAHMFLL MP GPDGQ VRDHV +FL+
Sbjct: 639 LQTYTLLLSCCTDARSNFDMGFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFLD 698
Query: 700 MMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLINLH 759
MHSEDRESKRGL+DAVVDFLHKSGLKEEAGSVWEVAA KNVYPDA++EK SYWLINLH
Sbjct: 699 FMHSEDRESKRGLMDAVVDFLHKSGLKEEAGSVWEVAAGKNVYPDALREKSYSYWLINLH 758
Query: 760 VMSDGTAVIALSRTLAWFRKQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLHM 819
VMS+GTAVIALSRTLAWFRKQML+SG PSRIDIVTGWGRRSRVTGTS+VRQAV+ELL++
Sbjct: 759 VMSEGTAVIALSRTLAWFRKQMLVSGDCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNI 818
Query: 820 FSFPFFTENGNSGCFVGCGEPLNKWLLQSYVDRMHLL 856
F+FPFFTENGNSGCFVG GEPL WLL+SYV+RMHLL
Sbjct: 819 FNFPFFTENGNSGCFVGSGEPLKNWLLESYVERMHLL 855
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900 gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana] gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana] gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1183 bits (3061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/884 (66%), Positives = 692/884 (78%), Gaps = 52/884 (5%)
Query: 1 MLRAKHITNLSSTARSFFLNGSRCSASDGSSCTCSEDETCVSRRQH-----------NAQ 49
M+RAKHI+NLSSTARSFFLNGSR S +DG+SC S+DE CVS+RQ +
Sbjct: 1 MIRAKHISNLSSTARSFFLNGSRTSVTDGNSCVYSDDENCVSKRQQLRKEAGQTEKRPSS 60
Query: 50 MVYTPARAGVVVSGEAAKAAGLQKSERVSVPS---------PSSLGRSDHVSYASSVDAV 100
++ P+ G ++ GE K +K + PS P+ +S V+YAS+V V
Sbjct: 61 ILPKPSVVGCILPGEVTKPVVPKKVDDFGRPSLLPQHVSSSPALPLKSHSVNYASTV--V 118
Query: 101 PKDV---LTSSPISDQFVKAGVAAVCFLSDLVNYKLPALDGSGTA-NSPTNFMVDPTRPL 156
++V +S PI DQ KAG+ AV FLSDL N K+P+ DG A P + MVDPTRP+
Sbjct: 119 REEVEGKASSEPIGDQIFKAGIVAVNFLSDLSNCKIPSYDGGSDAFGLPKSCMVDPTRPI 178
Query: 157 SNIKPANVKTIRRENVSKVYPNSSA-ESTVGS--NPSTGYHNAKDKGDNSNIARRFKRVS 213
S++K +NVK IRRE+ +K+YP S+A ES+VG+ NPS+ + AK+ + + + F++VS
Sbjct: 179 SSVKSSNVKAIRREHFAKIYPRSAAKESSVGTTRNPSSNFRGAKE-AERTGFVKGFRQVS 237
Query: 214 NASNGTSLETHNVSSDNSDRRRIVQPRSKAHSNRLNSNFKSNLQPSDAKVVECVSERFSK 273
N+ G SL T N + +R V R SNR V FS
Sbjct: 238 NSVVGKSLPTTN---NTYGKRTSVLQRPHIDSNRF------------------VPSGFSN 276
Query: 274 PSREM-KIPAGLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQ 332
S EM K P+G A SR + ++G++VE+VS +LR+++WGP AEEAL N +DAYQANQ
Sbjct: 277 SSVEMMKGPSGTALTSRQYCNSGHIVENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQ 336
Query: 333 VLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQ 392
VLKQ+ D+ ALGFF WL+RQ GFKHD HTYTTMVG LGRA+QFGAINKLLD+MVRDGCQ
Sbjct: 337 VLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQ 396
Query: 393 PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDM 452
PN VTYNRLIHSYGRANYLNEA++VF QMQ GC+PDRVTYCTLIDIHAKAGFLD+AMDM
Sbjct: 397 PNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDM 456
Query: 453 YKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK 512
Y++MQA GLSPDTFTYSVIINCLGKAGHL AAH+LFCEMV+QGC PNLVTYNIM+ L AK
Sbjct: 457 YQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAK 516
Query: 513 ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPV 572
ARNYQ+ALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYL+EAEAVF EM++KNW+PDEPV
Sbjct: 517 ARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPV 576
Query: 573 YGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGML 632
YGLLVDLWGKAGNV KAW+WY+AML AGLRPNVPTCNSLLS FLRV ++++AY LLQ ML
Sbjct: 577 YGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNML 636
Query: 633 NLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRD 692
LGL+PSLQTYTLLLSCCT+ RS DMGFC +LMA +GHPAHMFLL MP+ GPDG+NVR+
Sbjct: 637 ALGLRPSLQTYTLLLSCCTDGRSKLDMGFCGQLMASTGHPAHMFLLKMPAAGPDGENVRN 696
Query: 693 HVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMS 752
H +FL++MHSEDRESKRGLVDAVVDFLHKSG KEEAGSVWEVAAQKNV+PDA++EK S
Sbjct: 697 HANNFLDLMHSEDRESKRGLVDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCS 756
Query: 753 YWLINLHVMSDGTAVIALSRTLAWFRKQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQA 812
YWLINLHVMS+GTAV ALSRTLAWFRKQML SG PSRIDIVTGWGRRSRVTGTS+VRQA
Sbjct: 757 YWLINLHVMSEGTAVTALSRTLAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQA 816
Query: 813 VQELLHMFSFPFFTENGNSGCFVGCGEPLNKWLLQSYVDRMHLL 856
V+ELL++F PFFTE+GNSGCFVG GEPLN+WLLQS+V+RMHLL
Sbjct: 817 VEELLNIFGSPFFTESGNSGCFVGSGEPLNRWLLQSHVERMHLL 860
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein At1g18900-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1183 bits (3061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/879 (65%), Positives = 690/879 (78%), Gaps = 28/879 (3%)
Query: 1 MLRAKHITNLSSTARSFFLNGSRCSASDGSSCTCSEDETCVSRRQHNAQMVYTPA----- 55
MLRAK I +LS++ARSFFL+GSRC+A DG+SCTC EDETCVS RQ NA+ P+
Sbjct: 1 MLRAKQIGSLSNSARSFFLSGSRCNA-DGASCTCPEDETCVSERQ-NARNETLPSQKPST 58
Query: 56 -------RAGVVVSGEAAKAAGLQKSERVSV---------PSPSSLGRSDHVSYASSVDA 99
R G +++ EAAK K++ V + P+ ++ V YAS ++
Sbjct: 59 LVANSSPRVGPLIAEEAAKVIVSHKTDNVDLSVSIRQVANTGPNHQRGAECVRYASGLNT 118
Query: 100 VPKDVLTSSPISDQFVKAGVAAVCFLSDLVNYKLPALDGSGTANSPTNFMVDPTRPLSNI 159
V TS I+DQ VKAG+ AV SD VN+K+P+ D GT +S N MVDP R ++++
Sbjct: 119 VLDGECTSPRIADQVVKAGIMAVNLFSDFVNFKIPSSDYGGTFSSSKNCMVDPARSITSV 178
Query: 160 KPANVKTIRRENVSKVYPNSSAESTVGSNP-STGYHNAKDKGDNSNIARRFKR-VSNASN 217
KP+ +K +RREN+S+V+ S E V S P S+ H + K S+ + ++ VS A
Sbjct: 179 KPSKIKHLRRENISRVHSRPSVEIPVDSKPQSSSNHGSNCKPAQSSYVKGSRQEVSEART 238
Query: 218 GTSLETHNVSSDNSDRRRIVQPRSKAHSNRLNSNFKSNLQPSDAKVVECVSERFSKPSRE 277
+ N+SSD D+R + Q R++ HSN S+F S Q + + S+ F K
Sbjct: 239 QKLVVFQNISSDKCDKRNLPQ-RTRVHSNSFTSHFHSIAQTTGSDFTNS-SKNFKKFPDN 296
Query: 278 MKIPAGLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQVLKQL 337
+K P G+AP + F + NVVESVS IL+Q KWGP AEEA+G N S+DAYQANQ+LK++
Sbjct: 297 LKSPTGMAPITSSFLNAPNVVESVSCILQQLKWGPAAEEAIGKLNCSIDAYQANQILKRV 356
Query: 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVT 397
DH VALGFF WL+R F+HD HTYTTM+G+LGRA+QF AINKLLDQM++DGCQPNVVT
Sbjct: 357 DDHAVALGFFYWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVT 416
Query: 398 YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQ 457
YNR+IHSYGRANYL +A++VFKQMQ GCEPDRVTYCTLIDIHAK+GFLDVAM MY+KMQ
Sbjct: 417 YNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQ 476
Query: 458 AAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQ 517
AGL+PDTFTYSV+INCLGKAGHL AAH+LFC MV++GC+PNLVTYNIMIALQAKARNY+
Sbjct: 477 DAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYE 536
Query: 518 SALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLV 577
ALKLYRDMQ +GFEPDKVTY IVMEVLGHCG+L+EAE +F EM++KNWVPDEPVYGLLV
Sbjct: 537 IALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLV 596
Query: 578 DLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLK 637
DLWGK+GNV+KAWEWY AML+AGL+PNVPTCNSLLSAFLRV QLSDAY LLQ ML GLK
Sbjct: 597 DLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLK 656
Query: 638 PSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSF 697
PSLQTYTLLLSCCT+A++ DMGFC ELM V+GHPAH FL+S+PS GP+GQNVRDH+ F
Sbjct: 657 PSLQTYTLLLSCCTDAQT-NDMGFCCELMQVTGHPAHTFLVSLPSAGPNGQNVRDHMSKF 715
Query: 698 LEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLIN 757
L++MHSEDRESKRGLVDAVVDFLHKSGLKEEAG VWE A QKNVYPDAVKEK YWLIN
Sbjct: 716 LDLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGCVWEAAMQKNVYPDAVKEKSSCYWLIN 775
Query: 758 LHVMSDGTAVIALSRTLAWFRKQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELL 817
LHVMSDGTAV ALSRTLAWFR+Q+L+SGVGPSRIDIVTGWGRRS+VTG+SLVRQAVQ+LL
Sbjct: 776 LHVMSDGTAVTALSRTLAWFRQQLLLSGVGPSRIDIVTGWGRRSKVTGSSLVRQAVQDLL 835
Query: 818 HMFSFPFFTENGNSGCFVGCGEPLNKWLLQSYVDRMHLL 856
+FSFPFFTENGNSGCFVGCGEPL++WL QSYV+RMHLL
Sbjct: 836 SIFSFPFFTENGNSGCFVGCGEPLSRWLHQSYVERMHLL 874
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1182 bits (3059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/884 (66%), Positives = 692/884 (78%), Gaps = 52/884 (5%)
Query: 1 MLRAKHITNLSSTARSFFLNGSRCSASDGSSCTCSEDETCVSRRQH-----------NAQ 49
M+RAKHI+NLSSTARSFFLNGSR S +DG+SC S+DE CVS+RQ +
Sbjct: 118 MIRAKHISNLSSTARSFFLNGSRTSVTDGNSCVYSDDENCVSKRQQLRKEAGQTEKRPSS 177
Query: 50 MVYTPARAGVVVSGEAAKAAGLQKSERVSVPS---------PSSLGRSDHVSYASSVDAV 100
++ P+ G ++ GE K +K + PS P+ +S V+YAS+V V
Sbjct: 178 ILPKPSVVGCILPGEVTKPVVPKKVDDFGRPSLLPQHVSSSPALPLKSHSVNYASTV--V 235
Query: 101 PKDV---LTSSPISDQFVKAGVAAVCFLSDLVNYKLPALDGSGTA-NSPTNFMVDPTRPL 156
++V +S PI DQ KAG+ AV FLSDL N K+P+ DG A P + MVDPTRP+
Sbjct: 236 REEVEGKASSEPIGDQIFKAGIVAVNFLSDLSNCKIPSYDGGSDAFGLPKSCMVDPTRPI 295
Query: 157 SNIKPANVKTIRRENVSKVYPNSSA-ESTVGS--NPSTGYHNAKDKGDNSNIARRFKRVS 213
S++K +NVK IRRE+ +K+YP S+A ES+VG+ NPS+ + AK+ + + + F++VS
Sbjct: 296 SSVKSSNVKAIRREHFAKIYPRSAAKESSVGTTRNPSSNFRGAKE-AERTGFVKGFRQVS 354
Query: 214 NASNGTSLETHNVSSDNSDRRRIVQPRSKAHSNRLNSNFKSNLQPSDAKVVECVSERFSK 273
N+ G SL T N + +R V R SNR V FS
Sbjct: 355 NSVVGKSLPTTN---NTYGKRTSVLQRPHIDSNRF------------------VPSGFSN 393
Query: 274 PSREM-KIPAGLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQ 332
S EM K P+G A SR + ++G++VE+VS +LR+++WGP AEEAL N +DAYQANQ
Sbjct: 394 SSVEMMKGPSGTALTSRQYCNSGHIVENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQ 453
Query: 333 VLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQ 392
VLKQ+ D+ ALGFF WL+RQ GFKHD HTYTTMVG LGRA+QFGAINKLLD+MVRDGCQ
Sbjct: 454 VLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQ 513
Query: 393 PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDM 452
PN VTYNRLIHSYGRANYLNEA++VF QMQ GC+PDRVTYCTLIDIHAKAGFLD+AMDM
Sbjct: 514 PNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDM 573
Query: 453 YKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK 512
Y++MQA GLSPDTFTYSVIINCLGKAGHL AAH+LFCEMV+QGC PNLVTYNIM+ L AK
Sbjct: 574 YQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAK 633
Query: 513 ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPV 572
ARNYQ+ALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYL+EAEAVF EM++KNW+PDEPV
Sbjct: 634 ARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPV 693
Query: 573 YGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGML 632
YGLLVDLWGKAGNV KAW+WY+AML AGLRPNVPTCNSLLS FLRV ++++AY LLQ ML
Sbjct: 694 YGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNML 753
Query: 633 NLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRD 692
LGL+PSLQTYTLLLSCCT+ RS DMGFC +LMA +GHPAHMFLL MP+ GPDG+NVR+
Sbjct: 754 ALGLRPSLQTYTLLLSCCTDGRSKLDMGFCGQLMASTGHPAHMFLLKMPAAGPDGENVRN 813
Query: 693 HVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMS 752
H +FL++MHSEDRESKRGLVDAVVDFLHKSG KEEAGSVWEVAAQKNV+PDA++EK S
Sbjct: 814 HANNFLDLMHSEDRESKRGLVDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCS 873
Query: 753 YWLINLHVMSDGTAVIALSRTLAWFRKQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQA 812
YWLINLHVMS+GTAV ALSRTLAWFRKQML SG PSRIDIVTGWGRRSRVTGTS+VRQA
Sbjct: 874 YWLINLHVMSEGTAVTALSRTLAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQA 933
Query: 813 VQELLHMFSFPFFTENGNSGCFVGCGEPLNKWLLQSYVDRMHLL 856
V+ELL++F PFFTE+GNSGCFVG GEPLN+WLLQS+V+RMHLL
Sbjct: 934 VEELLNIFGSPFFTESGNSGCFVGSGEPLNRWLLQSHVERMHLL 977
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1181 bits (3056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 586/879 (66%), Positives = 686/879 (78%), Gaps = 57/879 (6%)
Query: 1 MLRAKHITNLSSTARSFFLNGSRCSASDGSSCTCSEDETCVSRRQH-NAQMVYTPAR--- 56
M+RAKHI+NLSS+ARSFFL+G+R SA DG+SCTC+EDE+CVS+RQ ++V T +
Sbjct: 1 MIRAKHISNLSSSARSFFLSGTRPSAGDGNSCTCAEDESCVSKRQQIRTEVVQTGKKVSN 60
Query: 57 -----AGVVVSGEAAKAAGLQKS-ERVSVP--------SPSSLGRSDHVSYASSVDAVPK 102
AG ++ EA K + KS E + P SP+ G++D A+ K
Sbjct: 61 LAAGLAGNILPVEACKPPVVPKSVEHFTRPLLLPQHVSSPALPGKTD--------SAIIK 112
Query: 103 DVLTSSPISDQFVKAG--VAAVCFLSDLVNYKLPALDGSGTANSPTNFMVDPTRPLSNIK 160
D + +PI DQ KAG + V LSD+ NYK+P DG+ P + MVDPTRP+S++K
Sbjct: 113 DDV-GAPIGDQIFKAGNGIGTVNLLSDVANYKIPLSDGTEVVGLPKSCMVDPTRPISSVK 171
Query: 161 PANVKTIRRENVSKVYPNSSAESTVGSNPSTGYHNAKDKGDNSNIARRFKRVSNASNGTS 220
+NVK IRRE+++KVYP S+ + S+PS S
Sbjct: 172 SSNVKVIRREHLAKVYPRSADRVAINSSPSI-------------------------KQAS 206
Query: 221 LETHNVSSDNSDRRRIVQP-RSKAHSNRLNSN-FKSNLQPSDAKVVECVSERFSKPSREM 278
E H++ S+ + +R P R+ S R S N+ SD + + E F KPSREM
Sbjct: 207 FEAHDLLSNTASGKRKSMPQRTYIDSTRYASGGCDYNVHSSDDRTIISSVEGFGKPSREM 266
Query: 279 -KIPAGLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQVLKQL 337
++ G AP R + + G VVE+VS ILR++KWG AEEAL N + MDAYQANQVLKQ+
Sbjct: 267 MRVTPGTAPTPRQYCNPGYVVENVSGILRRFKWGHAAEEALHNFGFRMDAYQANQVLKQM 326
Query: 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVT 397
++ ALGFF WL+RQ GFKHD HTYTTMVG LGRA+QFGAIN+LLD+MV+DGC+PN VT
Sbjct: 327 DNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDGCKPNTVT 386
Query: 398 YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQ 457
YNRLIHSYGRANYLNEA++VFKQMQ GCEPDRVTYCTLIDIHAKAGFLD+AMDMY++MQ
Sbjct: 387 YNRLIHSYGRANYLNEAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQ 446
Query: 458 AAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQ 517
AAGLSPDTFTYSVIINCLGKAGHL AAH+LFCEMV QGC PNLVT+NIMIAL AKARNY+
Sbjct: 447 AAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYE 506
Query: 518 SALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLV 577
+ALKLYRDMQNAGF+PDKVTYSIVMEVLGHCG+L+EAE VFAEM+RKNWVPDEPVYGLLV
Sbjct: 507 TALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLV 566
Query: 578 DLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLK 637
DLWGKAGNV KAW+WY+ ML AGLRPNVPTCNSLLS FLRV ++S+AY+LLQ ML LGL
Sbjct: 567 DLWGKAGNVEKAWQWYQEMLHAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLH 626
Query: 638 PSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSF 697
PSLQTYTLLLSCCT+ARS +DMGFC +LMAVSGHPAHMFLL MP GPDGQ VRDHV +F
Sbjct: 627 PSLQTYTLLLSCCTDARSNFDMGFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNF 686
Query: 698 LEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLIN 757
L+ MHSEDRESKRGL+DAVVDFLHKSGLKEEAGSVWEVAA KNVYPDA++EK SYWLIN
Sbjct: 687 LDFMHSEDRESKRGLMDAVVDFLHKSGLKEEAGSVWEVAAVKNVYPDALREKSCSYWLIN 746
Query: 758 LHVMSDGTAVIALSRTLAWFRKQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELL 817
LHVMS+GTAVIALSRTLAWFRKQML++G PSRIDIVTGWGRRSRVTGTS+VRQAV+ELL
Sbjct: 747 LHVMSEGTAVIALSRTLAWFRKQMLVTGDCPSRIDIVTGWGRRSRVTGTSMVRQAVEELL 806
Query: 818 HMFSFPFFTENGNSGCFVGCGEPLNKWLLQSYVDRMHLL 856
++F+FPFFTENGNSGCFVGCGEPL KWLL+SYV+RMHLL
Sbjct: 807 NIFNFPFFTENGNSGCFVGCGEPLKKWLLESYVERMHLL 845
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 856 | ||||||
| TAIR|locus:2027212 | 855 | AT1G74750 [Arabidopsis thalian | 0.975 | 0.976 | 0.674 | 3.7e-309 | |
| TAIR|locus:2206385 | 836 | EMB2217 "embryo defective 2217 | 0.509 | 0.521 | 0.283 | 2.5e-42 | |
| TAIR|locus:2044430 | 822 | AT2G18940 [Arabidopsis thalian | 0.410 | 0.427 | 0.292 | 3.9e-39 | |
| TAIR|locus:2061310 | 918 | GUN1 "AT2G31400" [Arabidopsis | 0.575 | 0.537 | 0.247 | 4.9e-39 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.359 | 0.376 | 0.308 | 5.1e-39 | |
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.507 | 0.390 | 0.277 | 7e-38 | |
| TAIR|locus:2089388 | 507 | AT3G16710 [Arabidopsis thalian | 0.341 | 0.575 | 0.317 | 3.6e-36 | |
| TAIR|locus:2009787 | 806 | AT1G30290 "AT1G30290" [Arabido | 0.419 | 0.445 | 0.294 | 9.8e-35 | |
| TAIR|locus:2174165 | 504 | AT5G16640 [Arabidopsis thalian | 0.362 | 0.615 | 0.287 | 1.6e-34 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.469 | 0.654 | 0.290 | 2.7e-34 |
| TAIR|locus:2027212 AT1G74750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2966 (1049.1 bits), Expect = 3.7e-309, P = 3.7e-309
Identities = 591/876 (67%), Positives = 687/876 (78%)
Query: 1 MLRAKHITNLSSTARSFFLNGSRCSASDGSSCTCSEDETCVSRRQH-NAQMVYTPARAGV 59
M+RAKHI+NLSS+ARSFFL+GSR SA+DG+SCTC+EDE+ VS+RQ ++V T RA
Sbjct: 1 MIRAKHISNLSSSARSFFLSGSRPSAADGNSCTCAEDESGVSKRQQIRTEVVQTGKRASN 60
Query: 60 VVSGEAAKAAGLQKSERVSVPS-------PSSLGRSDHVSY------ASSVD---AVPKD 103
+ +G A ++ + + VP PS L + HVS A SV+ A+ K+
Sbjct: 61 LAAGLAGSILPVEAGKPLVVPKTVEHFTRPSLLPQ--HVSSPALPGKADSVNHASAIIKE 118
Query: 104 VLTSSPISDQFVKAGVAAVCFLSDLVNYKLPALDGSGTANSPTNFMVDPTRPLSNIKPAN 163
+ PI DQ KAG+ V LSD+ NYK+P DG+ P + MVDPTRP+S +K +N
Sbjct: 119 DV-GVPIGDQIFKAGIGNVNLLSDIANYKIPLSDGTEVVGLPKSCMVDPTRPISGVKSSN 177
Query: 164 VKTIRRENVSKVYPNSSAESTVGSNPSTGYHNAKDKGDNSNIARRFKRVSNASNGTSLET 223
VK IRRE+++KVYP S+ + S+P T K+ SN G S E
Sbjct: 178 VKVIRREHLAKVYPRSADRVPINSSPGT------------------KQASNDVAGKSFEA 219
Query: 224 HNVSSDN-SDRRRIVQPRSKAHSNRLNSN-FKSNLQPSDAKVVECVSERFSKPSREM-KI 280
H++ S+N S +R+I+ R S R S ++ SD + + E F KPSREM K+
Sbjct: 220 HDLLSNNVSGKRKIMPQRPYTDSTRYASGGCDYSVHSSDDRTIISSVEGFGKPSREMMKV 279
Query: 281 PAGLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQVLKQLQDH 340
AP R + G VVE+VS ILR++KWG AEEAL N + MDAYQANQVLKQ+ ++
Sbjct: 280 TPRTAPTPRQHCNPGYVVENVSSILRRFKWGHAAEEALHNFGFRMDAYQANQVLKQMDNY 339
Query: 341 TVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNR 400
ALGFF WL+RQ GFKHD HTYTTMVG LGRA+QFG INKLLD+MVRDGC+PN VTYNR
Sbjct: 340 ANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNR 399
Query: 401 LIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAG 460
LIHSYGRANYL EA++VF QMQ GCEPDRVTYCTLIDIHAKAGFLD+AMDMY++MQ AG
Sbjct: 400 LIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAG 459
Query: 461 LSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSAL 520
LSPDTFTYSVIINCLGKAGHL AAH+LFCEMV QGC PNLVT+NIMIAL AKARNY++AL
Sbjct: 460 LSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETAL 519
Query: 521 KLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLW 580
KLYRDMQNAGF+PDKVTYSIVMEVLGHCG+L+EAE VFAEM+RKNWVPDEPVYGLLVDLW
Sbjct: 520 KLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLW 579
Query: 581 GKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL 640
GKAGNV KAW+WY+AMLQAGLRPNVPTCNSLLS FLRV ++S+AY+LLQ ML LGL PSL
Sbjct: 580 GKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSL 639
Query: 641 QTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEM 700
QTYTLLLSCCT+ARS +DMGFC +LMAVSGHPAHMFLL MP GPDGQ VRDHV +FL+
Sbjct: 640 QTYTLLLSCCTDARSNFDMGFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFLDF 699
Query: 701 MHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLINLHV 760
MHSEDRESKRGL+DAVVDFLHKSGLKEEAGSVWEVAA KNVYPDA++EK SYWLINLHV
Sbjct: 700 MHSEDRESKRGLMDAVVDFLHKSGLKEEAGSVWEVAAGKNVYPDALREKSYSYWLINLHV 759
Query: 761 MSDGTAVIALSRTLAWFRKQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLHMF 820
MS+GTAVIALSRTLAWFRKQML+SG PSRIDIVTGWGRRSRVTGTS+VRQAV+ELL++F
Sbjct: 760 MSEGTAVIALSRTLAWFRKQMLVSGDCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIF 819
Query: 821 SFPFFTENGNSGCFVGCGEPLNKWLLQSYVDRMHLL 856
+FPFFTENGNSGCFVG GEPL WLL+SYV+RMHLL
Sbjct: 820 NFPFFTENGNSGCFVGSGEPLKNWLLESYVERMHLL 855
|
|
| TAIR|locus:2206385 EMB2217 "embryo defective 2217" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 477 (173.0 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 125/441 (28%), Positives = 222/441 (50%)
Query: 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVF 418
D TY ++ L ++ + A KL QM +P+ ++ L+ S G+A L+ ++ V+
Sbjct: 312 DGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVY 371
Query: 419 KQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKA 478
+MQ G P + +LID +AKAG LD A+ ++ +M+ +G P+ Y++II K+
Sbjct: 372 MEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKS 431
Query: 479 GHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTY 538
G L+ A +F +M G +P TY+ ++ + A + SA+K+Y M NAG P +Y
Sbjct: 432 GKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSY 491
Query: 539 SIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQ 598
++ +L + +D A + EM+ + D +L+ ++ K +V A +W M
Sbjct: 492 ISLLTLLANKRLVDVAGKILLEMKAMGYSVDVCASDVLM-IYIKDASVDLALKWLRFMGS 550
Query: 599 AGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYD 658
+G++ N L + ++ G A LL+ +++ K L YT +L+ +
Sbjct: 551 SGIKTNNFIIRQLFESCMKNGLYDSARPLLETLVHSAGKVDLVLYTSILAHLVRCQDEDK 610
Query: 659 MGFCHELMAVSGHPAHMFLLSMPSPGPDG--QNVRDHVGSFLEMMHSEDRE-SKRGLVDA 715
+++ + H AH F+ + + GP+ Q V V F + + E E + R V+
Sbjct: 611 ERQLMSILSATKHKAHAFMCGLFT-GPEQRKQPVLTFVREFYQGIDYELEEGAARYFVNV 669
Query: 716 VVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLINLHVMSDGTAVIALSRTLA 775
++++L G A VW+VA + ++P A+ W +++ +S G A+IA+ TL
Sbjct: 670 LLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVVHTLH 729
Query: 776 WFRKQMLISGVGPSRIDIVTG 796
FRK+ML GV P RI +VTG
Sbjct: 730 RFRKRMLYYGVVPRRIKLVTG 750
|
|
| TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 448 (162.8 bits), Expect = 3.9e-39, P = 3.9e-39
Identities = 105/359 (29%), Positives = 175/359 (48%)
Query: 291 FASTGNVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQVLKQLQDHTVALGFFNWL 350
++ TG +++ R + GP L N +D + K + LG + +
Sbjct: 220 YSRTGKYEKAIDLFERMKEMGP--SPTLVTYNVILDVFG-----KMGRSWRKILGVLDEM 272
Query: 351 RRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANY 410
R + G K DE T +T++ R + ++ G +P VTYN L+ +G+A
Sbjct: 273 RSK-GLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGV 331
Query: 411 LNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSV 470
EAL V K+M+ C D VTY L+ + +AGF A + + M G+ P+ TY+
Sbjct: 332 YTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTT 391
Query: 471 IINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAG 530
+I+ GKAG A +LF M GC+PN TYN +++L K +K+ DM++ G
Sbjct: 392 VIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNG 451
Query: 531 FEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAW 590
P++ T++ ++ + G+ G VF EM+ + PD + L+ +G+ G+ A
Sbjct: 452 CSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDAS 511
Query: 591 EWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSC 649
+ Y M +AG V T N+LL+A R G +++ M + G KP+ +Y+L+L C
Sbjct: 512 KMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQC 570
|
|
| TAIR|locus:2061310 GUN1 "AT2G31400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 4.9e-39, Sum P(2) = 4.9e-39
Identities = 129/521 (24%), Positives = 246/521 (47%)
Query: 357 KHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALD 416
+ D +Y T++ + + Q ++L QM PNVV+Y+ +I + +A +EAL+
Sbjct: 371 EQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALN 430
Query: 417 VFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG 476
+F +M+ +G DRV+Y TL+ I+ K G + A+D+ ++M + G+ D TY+ ++ G
Sbjct: 431 LFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYG 490
Query: 477 KAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKV 536
K G ++F EM + +PNL+TY+ +I +K Y+ A++++R+ ++AG D V
Sbjct: 491 KQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVV 550
Query: 537 TYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEA- 595
YS +++ L G + A ++ EM ++ P+ Y ++D +G++ + ++ ++
Sbjct: 551 LYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGG 610
Query: 596 ---MLQAGLRPNVPT-CNSLLSAFLRV--------------G--QLSDAYHLLQGMLNLG 635
+ L T N ++ F ++ G +LS + + M L
Sbjct: 611 SLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLE 670
Query: 636 LKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVG 695
+KP++ T++ +L+ C+ S D E + + + + + + G +NV
Sbjct: 671 IKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLM-G-QRENVWLQAQ 728
Query: 696 SFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWL 755
S + ++ D + +A+ D L G K A V + V+ + +
Sbjct: 729 SLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGRSRQVWENVWSDS-----C 783
Query: 756 INLHVMSDGTAVIALSRTLAWFRKQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQE 815
++LH+MS G A + L R + P + I+TGWG+ S+V G +R+AV+
Sbjct: 784 LDLHLMSSGAARAMVHAWLLNIRSIVYEGHELPKVLSILTGWGKHSKVVGDGALRRAVEV 843
Query: 816 LLHMFSFPFFTENGNSGCFVGCGEPLNKWLLQSYVDRMHLL 856
LL PF N G F G + WL +S ++ +L
Sbjct: 844 LLRGMDAPFHLSKCNMGRFTSSGSVVATWLRESATLKLLIL 884
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 447 (162.4 bits), Expect = 5.1e-39, P = 5.1e-39
Identities = 96/311 (30%), Positives = 161/311 (51%)
Query: 355 GFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEA 414
G D +TY T++ R ++ ++M G + VTYN L+ YG+++ EA
Sbjct: 274 GIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEA 333
Query: 415 LDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINC 474
+ V +M + G P VTY +LI +A+ G LD AM++ +M G PD FTY+ +++
Sbjct: 334 MKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSG 393
Query: 475 LGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD 534
+AG +++A +F EM N GC PN+ T+N I + + +K++ ++ G PD
Sbjct: 394 FERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPD 453
Query: 535 KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYE 594
VT++ ++ V G G E VF EM+R +VP+ + L+ + + G+ +A Y
Sbjct: 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYR 513
Query: 595 AMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEAR 654
ML AG+ P++ T N++L+A R G + +L M + KP+ TY LL +
Sbjct: 514 RMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGK 573
Query: 655 SPYDMGFCHEL 665
++G H L
Sbjct: 574 ---EIGLMHSL 581
|
|
| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 440 (159.9 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 123/444 (27%), Positives = 211/444 (47%)
Query: 309 KWGPLAEEALGNTNYSMDAYQANQVLKQLQDHTVALGFFNWLRRQA--GFKHDEHTYTT- 365
K P A + + ++AY N ++ L RR GF+ TY++
Sbjct: 170 KQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSL 229
Query: 366 MVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVG 425
MVG LG+ R ++ LL +M G +PNV T+ I GRA +NEA ++ K+M G
Sbjct: 230 MVG-LGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEG 288
Query: 426 CEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAH 485
C PD VTY LID A LD A ++++KM+ PD TY +++ L +
Sbjct: 289 CGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVK 348
Query: 486 QLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVL 545
Q + EM G +P++VT+ I++ KA N+ A M++ G P+ TY+ ++ L
Sbjct: 349 QFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGL 408
Query: 546 GHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNV 605
LD+A +F M P Y + +D +GK+G+ A E +E M G+ PN+
Sbjct: 409 LRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNI 468
Query: 606 PTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYD-MGFCHE 664
CN+ L + + G+ +A + G+ ++GL P TY +++ C ++ + + E
Sbjct: 469 VACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSE 528
Query: 665 LMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLV--DAVVDFLHK 722
+M P + + S+ + V + F+ M ++ + K +V + ++ L K
Sbjct: 529 MMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRM---KEMKLKPTVVTYNTLLAGLGK 585
Query: 723 SGLKEEAGSVWEVAAQKNVYPDAV 746
+G +EA ++E QK P+ +
Sbjct: 586 NGKIQEAIELFEGMVQKGCPPNTI 609
|
|
| TAIR|locus:2089388 AT3G16710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 3.6e-36, P = 3.6e-36
Identities = 94/296 (31%), Positives = 153/296 (51%)
Query: 355 GFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEA 414
GFK + TYTT++ L + R +L +QM +G +PNVVTYN L+ +A
Sbjct: 183 GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDA 242
Query: 415 LDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINC 474
+ + M EP+ +T+ LID K G L A ++Y M + PD FTY +IN
Sbjct: 243 AWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLING 302
Query: 475 LGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD 534
L G L A Q+F M GC PN V Y +I K++ + +K++ +M G +
Sbjct: 303 LCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVAN 362
Query: 535 KVTYSIVMEVLGHC--GYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEW 592
+TY+++++ G+C G D A+ VF +M + PD Y +L+D G V KA
Sbjct: 363 TITYTVLIQ--GYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMI 420
Query: 593 YEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLS 648
+E M + + N+ T ++ ++G++ DA+ L + + G+KP++ TYT ++S
Sbjct: 421 FEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMIS 476
|
|
| TAIR|locus:2009787 AT1G30290 "AT1G30290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 408 (148.7 bits), Expect = 9.8e-35, P = 9.8e-35
Identities = 107/363 (29%), Positives = 180/363 (49%)
Query: 297 VVESVSRILR-QWKWGPLAEEALGNTNYSMDAYQANQVLKQLQDHTVALGFFNWLRRQAG 355
+V V R++ + W P E + N S+ Q VL+ D VAL FF W RQ
Sbjct: 143 LVREVGRLIGLRSSWNPKHEGQMRNLLRSLKPSQVCAVLRSQDDERVALKFFYWADRQWR 202
Query: 356 FKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEAL 415
++HD Y +M+ +L + + ++L M R G ++R++ SY RA L +AL
Sbjct: 203 YRHDPMVYYSMLEVLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDAL 262
Query: 416 DVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCL 475
V MQ G EP+ + T ID+ +A L+ A+ ++MQ G+ P+ TY+ +I
Sbjct: 263 KVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGY 322
Query: 476 GKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDM-QNAGFEPD 534
++ A +L +M ++GC+P+ V+Y ++ K + L + M + G PD
Sbjct: 323 CDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPD 382
Query: 535 KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYE 594
+VTY+ ++ +L + DEA + + K + D+ Y +V K G + +A +
Sbjct: 383 QVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLIN 442
Query: 595 AMLQAG-LRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLS-CCTE 652
ML G P+V T ++++ F R+G++ A LLQ M G KP+ +YT LL+ C
Sbjct: 443 EMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRT 502
Query: 653 ARS 655
+S
Sbjct: 503 GKS 505
|
|
| TAIR|locus:2174165 AT5G16640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 368 (134.6 bits), Expect = 1.6e-34, Sum P(3) = 1.6e-34
Identities = 91/317 (28%), Positives = 164/317 (51%)
Query: 334 LKQLQDHTVALGFFNWLRRQA-GFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQ 392
+ +++ + V + + W + Q G H+ T ++ R Q L +M++ G +
Sbjct: 91 ISKMKKYDVVI--YLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHE 148
Query: 393 PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDM 452
P++VT+ L++ + R + + +AL +F QM +G +P+ V Y T+ID K+ +D A+D+
Sbjct: 149 PSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDL 208
Query: 453 YKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK 512
+M+ G+ PD TY+ +I+ L +G A ++ M + P++ T+N +I K
Sbjct: 209 LNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVK 268
Query: 513 ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY--LDEAEAVFAEMRRKNWVPDE 570
A + Y +M +PD VTYS++ + G C Y LDEAE +F M K PD
Sbjct: 269 EGRVSEAEEFYEEMIRRSLDPDIVTYSLL--IYGLCMYSRLDEAEEMFGFMVSKGCFPDV 326
Query: 571 PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQG 630
Y +L++ + K+ V + + M Q G+ N T L+ + R G+L+ A + +
Sbjct: 327 VTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRR 386
Query: 631 MLNLGLKPSLQTYTLLL 647
M+ G+ P++ TY +LL
Sbjct: 387 MVFCGVHPNIITYNVLL 403
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 2.7e-34, P = 2.7e-34
Identities = 121/417 (29%), Positives = 202/417 (48%)
Query: 353 QAGFKHDEHTYTTMV-GILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYL 411
+ G++ D T+TT+V G+ + A+ L+++MV GCQP++VTY +I+ +
Sbjct: 163 EMGYQPDTVTFTTLVHGLFQHNKASEAV-ALVERMVVKGCQPDLVTYGAVINGLCKRGEP 221
Query: 412 NEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVI 471
+ AL++ +M+ E D V Y T+ID K +D A++++ +M G+ PD FTYS +
Sbjct: 222 DLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSL 281
Query: 472 INCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGF 531
I+CL G A +L +M+ + PN+VT+N +I AK A KL+ +M
Sbjct: 282 ISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSI 341
Query: 532 EPDKVTYSIVMEVLGHCGY--LDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKA 589
+P+ VTY+ ++ G C + LDEA+ +F M K+ +PD Y L++ + KA V
Sbjct: 342 DPNIVTYNSLIN--GFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDG 399
Query: 590 WEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTY-TLLLS 648
E + M + GL N T +L+ F + +A + + M++ G+ P++ TY TLL
Sbjct: 400 MELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDG 459
Query: 649 CCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGP-DGQNVRDHVGSFLEMMHSEDRE 707
C + M E + S ++ ++ S G V D F + +
Sbjct: 460 LCKNGKLEKAM-VVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKP 518
Query: 708 SKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLINLHVMSDG 764
+ F K GLKEEA +++ + PD+ G LI H + DG
Sbjct: 519 DVIAYNTMISGFC-KKGLKEEAYTLFIKMKEDGPLPDS----GTYNTLIRAH-LRDG 569
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SSF9 | PP123_ARATH | No assigned EC number | 0.6716 | 0.9742 | 0.9754 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 856 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-38 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-18 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-15 | |
| smart00463 | 80 | smart00463, SMR, Small MutS-related domain | 7e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-08 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 4e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (392), Expect = 1e-38
Identities = 92/314 (29%), Positives = 155/314 (49%), Gaps = 3/314 (0%)
Query: 350 LRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRAN 409
L ++AG K D YTT++ ++ + A+ ++ +MV G + NV T+ LI RA
Sbjct: 462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521
Query: 410 YLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAG--LSPDTFT 467
+ +A + M+ +PDRV + LI ++G +D A D+ +M+A + PD T
Sbjct: 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581
Query: 468 YSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQ 527
++ AG + A +++ + Y I + ++ ++ AL +Y DM+
Sbjct: 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641
Query: 528 NAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVR 587
G +PD+V +S +++V GH G LD+A + + R++ Y L+ A N +
Sbjct: 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701
Query: 588 KAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLL 647
KA E YE + LRP V T N+L++A QL A +L M LGL P+ TY++LL
Sbjct: 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
Query: 648 SCCTEARSPYDMGF 661
E + D+G
Sbjct: 762 VAS-ERKDDADVGL 774
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 3e-18
Identities = 63/264 (23%), Positives = 126/264 (47%), Gaps = 2/264 (0%)
Query: 393 PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDM 452
P + T+N L+ + ++ AL V + +Q G + D Y TLI AK+G +D ++
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 453 YKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK 512
+ +M AG+ + T+ +I+ +AG + A + M ++ P+ V +N +I+ +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 513 ARNYQSALKLYRDM--QNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDE 570
+ A + +M + +PD +T +M+ + G +D A+ V+ + N
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614
Query: 571 PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQG 630
VY + V+ + G+ A Y+ M + G++P+ ++L+ G L A+ +LQ
Sbjct: 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674
Query: 631 MLNLGLKPSLQTYTLLLSCCTEAR 654
G+K +Y+ L+ C+ A+
Sbjct: 675 ARKQGIKLGTVSYSSLMGACSNAK 698
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 3e-18
Identities = 76/344 (22%), Positives = 141/344 (40%), Gaps = 43/344 (12%)
Query: 340 HTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYN 399
H AL F L F TY +V + + + + G +P+ N
Sbjct: 103 HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162
Query: 400 RLIHSYGRANYLNEALDVFKQMQVVGCEPDR--VTYCTLIDIHAKAGFLDVAMDMYKKMQ 457
R++ + + L +A +F +M P+R ++ T+I AG A ++++M
Sbjct: 163 RVLLMHVKCGMLIDARRLFDEM------PERNLASWGTIIGGLVDAGNYREAFALFREMW 216
Query: 458 AAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQG---------------------- 495
G + T+ V++ G +A QL C ++ G
Sbjct: 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276
Query: 496 -------CIP--NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLG 546
+P V +N M+A A + AL LY +M+++G D+ T+SI++ +
Sbjct: 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336
Query: 547 HCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVP 606
L+ A+ A + R + D LVDL+ K G + A ++ M R N+
Sbjct: 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLI 392
Query: 607 TCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCC 650
+ N+L++ + G+ + A + + M+ G+ P+ T+ +LS C
Sbjct: 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 1e-16
Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 4/215 (1%)
Query: 427 EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQ 486
P T+ L+ + A + +D A+ + + +Q AGL D Y+ +I+ K+G + A +
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493
Query: 487 LFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLG 546
+F EMVN G N+ T+ +I A+A A Y M++ +PD+V ++ ++ G
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553
Query: 547 HCGYLDEAEAVFAEMR--RKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPN 604
G +D A V AEM+ PD G L+ AG V +A E Y+ + + ++
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK-G 612
Query: 605 VPTCNSL-LSAFLRVGQLSDAYHLLQGMLNLGLKP 638
P ++ +++ + G A + M G+KP
Sbjct: 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP 647
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.1 bits (173), Expect = 3e-15
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 393 PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLID 438
P+VVTYN LI Y + + EAL +F +M+ G +P+ TY LID
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 5e-15
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 463 PDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMI 507
PD TY+ +I+ K G ++ A +LF EM +G PN+ TY+I+I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|214676 smart00463, SMR, Small MutS-related domain | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 7e-15
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 754 WLINLHVMSDGTAVIALSRTLAWFRKQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAV 813
W ++LH ++ A+ AL + L R + L ++ I+TG G+ S G S V+ A+
Sbjct: 2 WSLDLHGLTVEEALTALDKFLNNARLKGLE-----QKLVIITGKGKHSL-GGKSGVKPAL 55
Query: 814 QELLHMFSFPFFTENGNSGCFV 835
+E L + SF F E GNSG V
Sbjct: 56 KEHLRVESFR-FAEEGNSGVLV 76
|
Length = 80 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 5e-14
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 428 PDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGK 477
PD VTY TLID + K G ++ A+ ++ +M+ G+ P+ +TYS++I+ L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 9e-14
Identities = 67/297 (22%), Positives = 119/297 (40%), Gaps = 39/297 (13%)
Query: 387 VRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFL 446
V+ G +V N LI Y EA VF +M+ D V++ +I + K G
Sbjct: 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLP 370
Query: 447 DVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIM 506
D A++ Y M+ +SPD T + +++ G L +L +G I +V N +
Sbjct: 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430
Query: 507 IALQAKARNYQSALKLYRDMQN----------AGF--------------------EPDKV 536
I + +K + AL+++ ++ AG +P+ V
Sbjct: 431 IEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSV 490
Query: 537 TYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAM 596
T + G L + + A + R D + L+DL+ + G + AW + +
Sbjct: 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550
Query: 597 LQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEA 653
+V + N LL+ ++ G+ S A L M+ G+ P T+ LL C+ +
Sbjct: 551 -----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.7 bits (159), Expect = 2e-13
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 498 PNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHC 548
P++VTYN +I K + ALKL+ +M+ G +P+ TYSI+++ G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID--GLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 1e-12
Identities = 50/224 (22%), Positives = 102/224 (45%), Gaps = 8/224 (3%)
Query: 392 QPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMD 451
+ V +N ++ Y Y EAL ++ +M+ G D+ T+ +I I ++ L+ A
Sbjct: 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346
Query: 452 MYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQA 511
+ + G D + +++ K G ++ A +F M + NL+++N +IA
Sbjct: 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYG 402
Query: 512 KARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWV-PDE 570
A++++ M G P+ VT+ V+ + G ++ +F M + + P
Sbjct: 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462
Query: 571 PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSA 614
Y +++L G+ G + +A Y + +A +P V +LL+A
Sbjct: 463 MHYACMIELLGREGLLDEA---YAMIRRAPFKPTVNMWAALLTA 503
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 2e-12
Identities = 37/158 (23%), Positives = 76/158 (48%)
Query: 381 KLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIH 440
+ D M + G +P+ V ++ L+ G A L++A ++ + + G + V+Y +L+
Sbjct: 635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
Query: 441 AKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNL 500
+ A A+++Y+ +++ L P T + +I L + L A ++ EM G PN
Sbjct: 695 SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754
Query: 501 VTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTY 538
+TY+I++ + + L L + G +P+ V
Sbjct: 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC 792
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 4e-12
Identities = 57/282 (20%), Positives = 115/282 (40%), Gaps = 38/282 (13%)
Query: 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMY 453
+ V++ +I Y + ++AL+ + M+ PD +T +++ A G LDV + ++
Sbjct: 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH 412
Query: 454 KKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIA-LQAK 512
+ + GL + +I K + A ++F + + +++++ +IA L+
Sbjct: 413 ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLN 468
Query: 513 ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPV 572
R ++ AL +R M +P+ VT + G L + + A + R D +
Sbjct: 469 NRCFE-ALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL 526
Query: 573 YGLLVDLWGKAGNVRKAW------------------------------EWYEAMLQAGLR 602
L+DL+ + G + AW E + M+++G+
Sbjct: 527 PNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586
Query: 603 PNVPTCNSLLSAFLRVGQLSDAYHLLQGM-LNLGLKPSLQTY 643
P+ T SLL A R G ++ M + P+L+ Y
Sbjct: 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 7e-11
Identities = 66/266 (24%), Positives = 110/266 (41%), Gaps = 49/266 (18%)
Query: 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTY-CTLIDIHAKAGFLDVAM-- 450
++ ++N L+ Y +A Y +EAL ++ +M G PD T+ C L G D+A
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL---RTCGGIPDLARGR 207
Query: 451 DMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQ 510
+++ + G D + +I K G + +A +F M + CI ++N MI+
Sbjct: 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCI----SWNAMISGY 263
Query: 511 AKARNYQSALKLYRDMQNAGFEPDKVTYSIVM---EVLG--------------------- 546
+ L+L+ M+ +PD +T + V+ E+LG
Sbjct: 264 FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV 323
Query: 547 -----------HCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEA 595
G EAE VF+ M K+ V + ++ + K G KA E Y
Sbjct: 324 SVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS----WTAMISGYEKNGLPDKALETYAL 379
Query: 596 MLQAGLRPNVPTCNSLLSAFLRVGQL 621
M Q + P+ T S+LSA +G L
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDL 405
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 2e-10
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 603 PNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCC 650
P+V T N+L+ + + G++ +A L M G+KP++ TY++L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 4e-10
Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 9/205 (4%)
Query: 394 NVVTYNRLIHSYGRANYLN-EALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDM 452
+V+++ +I R N EAL F+QM ++ +P+ VT + A+ G L ++
Sbjct: 454 DVISWTSIIAGL-RLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEI 511
Query: 453 YKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK 512
+ + G+ D F + +++ + G + A F ++V++NI++
Sbjct: 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-----SHEKDVVSWNILLTGYVA 566
Query: 513 ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK-NWVPDEP 571
A++L+ M +G PD+VT+ ++ G + + F M K + P+
Sbjct: 567 HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626
Query: 572 VYGLLVDLWGKAGNVRKAWEWYEAM 596
Y +VDL G+AG + +A+ + M
Sbjct: 627 HYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 5e-10
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 389 DGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQ 422
G +P+VVTYN LI RA ++EA+++ +M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 6e-10
Identities = 48/215 (22%), Positives = 89/215 (41%), Gaps = 26/215 (12%)
Query: 355 GFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEA 414
G K DE ++ +V + G A ++L + G + V+Y+ L+ + A +A
Sbjct: 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703
Query: 415 LDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINC 474
L++++ ++ + P T LI + L A+++ +M+ GL P+T TYS+++
Sbjct: 704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763
Query: 475 LGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIAL-----------------------QA 511
+ L + G PNLV + L Q
Sbjct: 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQI 823
Query: 512 KARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLG 546
+ + AL +YR+ +AG P T ++ +VLG
Sbjct: 824 ENKWTSWALMVYRETISAGTLP---TMEVLSQVLG 855
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-09
Identities = 59/267 (22%), Positives = 111/267 (41%), Gaps = 34/267 (12%)
Query: 395 VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLD-----VA 449
VV N LI Y + +++AL+VF + E D +++ ++I AG A
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSII-----AGLRLNNRCFEA 474
Query: 450 MDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQA-----AHQLFCEMVNQGCIPNLVTYN 504
+ +++M L P++ T ++ + G L AH L + G +PN
Sbjct: 475 LIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN----- 528
Query: 505 IMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK 564
++ L + A Q E D V+++I++ G A +F M
Sbjct: 529 ALLDLYVRCGRMNYAWN-----QFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583
Query: 565 NWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAM-LQAGLRPNVPTCNSLLSAFLRVGQLSD 623
PDE + L+ ++G V + E++ +M + + PN+ ++ R G+L++
Sbjct: 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643
Query: 624 AYHLLQGMLNLGLKPSLQTYTLLLSCC 650
AY+ + M + P + LL+ C
Sbjct: 644 AYNFINKM---PITPDPAVWGALLNAC 667
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 2e-09
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGR 407
D TY T++ + + KL ++M + G +PNV TY+ LI +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 3e-08
Identities = 52/246 (21%), Positives = 107/246 (43%), Gaps = 11/246 (4%)
Query: 408 ANYLNEALDVFKQMQVVGC--EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDT 465
EAL++F+ ++ GC TY L++ + +Y ++++G PD
Sbjct: 100 CGRHREALELFEILEA-GCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ 158
Query: 466 FTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRD 525
+ + ++ K G L A +LF EM + NL ++ +I A NY+ A L+R+
Sbjct: 159 YMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFRE 214
Query: 526 MQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGN 585
M G + + T+ +++ G + + + + V D V L+D++ K G+
Sbjct: 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274
Query: 586 VRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTL 645
+ A ++ M + NS+L+ + G +A L M + G+ T+++
Sbjct: 275 IEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330
Query: 646 LLSCCT 651
++ +
Sbjct: 331 MIRIFS 336
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 4e-08
Identities = 32/124 (25%), Positives = 63/124 (50%), Gaps = 12/124 (9%)
Query: 380 NKLLDQMVRDG-----------CQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEP 428
N LLD VR G + +VV++N L+ Y + A+++F +M G P
Sbjct: 528 NALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587
Query: 429 DRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA-GLSPDTFTYSVIINCLGKAGHLQAAHQL 487
D VT+ +L+ +++G + ++ + M+ ++P+ Y+ +++ LG+AG L A+
Sbjct: 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNF 647
Query: 488 FCEM 491
+M
Sbjct: 648 INKM 651
|
Length = 857 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.2 bits (131), Expect = 4e-08
Identities = 42/295 (14%), Positives = 81/295 (27%), Gaps = 35/295 (11%)
Query: 305 LRQWKWGPLAEEALGNTNYSMDAYQANQVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYT 364
L L A +L+ L + AL
Sbjct: 4 LLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLL 63
Query: 365 TMVGILGRARQFGAINKLLDQMVRDGCQPN-VVTYNRLIHSYGRANYLNEALDVFKQMQV 423
+ L + + +LL++ + PN L EAL++ ++
Sbjct: 64 LLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA 123
Query: 424 VGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQA 483
+ +PD + + G + A+++Y+K A L P+ +
Sbjct: 124 LDPDPDLAEALLALGALYELGDYEEALELYEK--ALELDPELNELAE------------- 168
Query: 484 AHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVME 543
+ AL Y+ AL+L + D +
Sbjct: 169 ------------------ALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGL 210
Query: 544 VLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQ 598
+ G +EA + + + + L L + G +A E E L+
Sbjct: 211 LYLKLGKYEEALEYYEKALELDP-DNAEALYNLALLLLELGRYEEALEALEKALE 264
|
Length = 291 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 1e-07
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 8/240 (3%)
Query: 411 LNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSV 470
L +AL + + MQ + D Y L + ++ + + ++ S +
Sbjct: 67 LEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126
Query: 471 IINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAG 530
+++ + G L A +F +M + +L ++N+++ AKA + AL LY M AG
Sbjct: 127 MLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG 182
Query: 531 FEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAW 590
PD T+ V+ G L V A + R + D V L+ ++ K G+V A
Sbjct: 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR 242
Query: 591 EWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCC 650
++ M R + + N+++S + G+ + L M L + P L T T ++S C
Sbjct: 243 LVFDRM----PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 1e-07
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 396 VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD 429
VTYN LI +A + EAL++FK+M+ G EPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-07
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 533 PDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVD 578
PD VTY+ +++ G ++EA +F EM+++ P+ Y +L+D
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-07
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 466 FTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPN 499
TY+ +I+ L KAG ++ A +LF EM +G P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-07
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 568 PDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAF 615
PD Y L+D + K G V +A + + M + G++PNV T + L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 4e-07
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 460 GLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMV 492
GL PD TY+ +I+ L +AG + A +L EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 431 VTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDT 465
VTY TLID KAG ++ A++++K+M+ G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 536 VTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDE 570
VTY+ +++ L G ++EA +F EM+ + PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 5e-06
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 501 VTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD 534
VTYN +I KA + AL+L+++M+ G EPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 8e-06
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 396 VTYNRLIHSYGRANYLNEALDVFKQMQVVGC 426
VTYN LI Y +A L EAL++FK+M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 31/122 (25%), Positives = 56/122 (45%)
Query: 532 EPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWE 591
P T++++M V +D A V ++ D +Y L+ K+G V +E
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493
Query: 592 WYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCT 651
+ M+ AG+ NV T +L+ R GQ++ A+ M + +KP + L+S C
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553
Query: 652 EA 653
++
Sbjct: 554 QS 555
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 425 GCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQ 457
G +PD VTY TLID +AG +D A+++ +M+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 3e-05
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 530 GFEPDKVTYSIVMEVLGHC--GYLDEAEAVFAEMR 562
G +PD VTY+ +++ G C G +DEA + EM
Sbjct: 2 GLKPDVVTYNTLID--GLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 1e-04
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 431 VTYCTLIDIHAKAGFLDVAMDMYKKMQAAGL 461
VTY +LI + KAG L+ A++++K+M+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 466 FTYSVIINCLGKAGHLQAAHQLFCEMVNQGC 496
TY+ +I+ KAG L+ A +LF EM +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 1e-04
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 500 LVTYNIMIALQAKARNYQSALKLYRDMQNAGFEP 533
L TYN ++ AKA + AL + +M+ +G +P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 361 HTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNV 395
TY T++ L +A + +L +M G +P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 536 VTYSIVMEVLGHCGYLDEAEAVFAEMRRKN 565
VTY+ ++ G L+EA +F EM+ K
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 501 VTYNIMIALQAKARNYQSALKLYRDMQNAGF 531
VTYN +I+ KA + AL+L+++M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (89), Expect = 6e-04
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 600 GLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGM 631
GL+P+V T N+L+ R G++ +A LL M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 8e-04
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 607 TCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS 639
T N+L+ + G++ +A L + M G++P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 494 QGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQ 527
+G P++VTYN +I +A A++L +M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 536 VTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVP 568
TY+ ++ L G D A AV EM+ P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 431 VTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSP 463
TY L+ AKAG D+A+ + ++M+A+GL P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 395 VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEP 428
+ TYN L+ + +A + AL V ++M+ G +P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 465 TFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIP 498
TY+ ++ L KAG A + EM G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.003
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 572 VYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNV 605
Y L+D KAG V +A E ++ M + G+ P+V
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 856 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.91 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.72 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.71 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.7 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.69 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.69 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.68 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.66 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.65 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.64 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.55 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.55 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.54 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.45 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.39 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.39 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.36 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.36 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.36 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.34 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.31 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.3 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.27 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.27 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.25 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.23 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.22 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.21 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.18 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.15 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.12 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.12 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.11 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.08 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.07 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.07 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.06 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.05 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.04 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.04 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.02 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.01 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.0 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.99 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.98 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.97 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.96 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.93 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.9 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.87 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.85 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.85 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.84 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.76 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.75 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.69 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.68 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.65 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.62 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.58 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.58 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.57 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.56 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.55 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.51 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.43 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.42 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.38 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.37 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.35 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.35 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.33 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.32 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.29 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.28 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.27 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.25 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.24 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.22 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.21 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.19 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.17 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.12 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.11 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.03 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.01 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.0 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 97.97 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.96 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 97.94 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.92 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.92 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.9 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.9 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.89 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.87 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.87 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.86 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.81 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.8 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.79 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.76 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.75 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.74 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.68 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.65 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.65 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.65 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.64 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.63 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.63 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.62 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.61 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 97.57 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.56 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.56 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.53 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.53 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.5 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.46 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.46 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.45 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.43 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.43 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.42 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.38 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.37 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.36 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.34 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.32 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.29 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.29 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.15 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.13 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.13 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.1 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.1 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.07 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.05 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.05 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.02 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.95 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.89 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.87 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.73 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 96.64 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.63 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.58 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.54 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 96.52 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.43 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.39 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.33 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.27 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 96.25 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.2 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.15 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.13 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.11 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.0 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.92 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 95.9 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 95.89 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 95.82 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.79 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 95.69 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 95.67 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 95.59 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 95.55 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.41 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.36 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 95.35 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 95.25 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.18 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 95.17 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 95.13 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 95.1 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.0 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.81 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.77 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 94.77 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 94.7 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 94.45 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 94.35 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.31 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.3 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 94.27 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 94.24 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.2 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 94.19 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.03 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.99 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.89 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 93.88 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 93.82 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.81 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 93.69 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.57 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.55 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 93.5 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.26 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.09 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.07 | |
| smart00463 | 80 | SMR Small MutS-related domain. | 93.05 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 92.8 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 92.74 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.57 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 92.48 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.43 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 92.43 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 92.28 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.16 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.12 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.09 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 91.96 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 91.83 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.83 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 91.77 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 91.41 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 91.31 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.22 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.17 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.07 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 90.98 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 90.33 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.73 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 89.61 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.58 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 89.42 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.38 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 89.24 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 88.82 | |
| KOG2297 | 412 | consensus Predicted translation factor, contains W | 88.21 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 88.06 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 88.06 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.88 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 87.37 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 87.37 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 87.27 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.04 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 86.95 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 86.81 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 86.68 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 86.27 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 86.27 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 86.14 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 85.63 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 84.74 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 84.64 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 83.7 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 83.47 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 83.06 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 83.05 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 82.83 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.64 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 81.94 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 81.5 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 81.47 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 81.01 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 80.93 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 80.79 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 80.66 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 80.2 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-61 Score=589.15 Aligned_cols=571 Identities=23% Similarity=0.294 Sum_probs=468.0
Q ss_pred CCCCchhhhhhhhhccCCCCcCCCCCCCchhhhHhhhcCCchHHHHHHHHHhccCCchHHHHHhhcCCCCCHHHHHHHHH
Q 003028 256 LQPSDAKVVECVSERFSKPSREMKIPAGLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQVLK 335 (856)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~iL~~~~~~~~~~~~l~~~~~~~~~~~~~~vL~ 335 (856)
...|....+..+++.+..+...+........+++.....+ ..+.+..+++.+. .|+..+++.++.
T Consensus 381 ~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g-~~~eAl~lf~~M~--------------~pd~~Tyn~LL~ 445 (1060)
T PLN03218 381 LRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR-AVKEAFRFAKLIR--------------NPTLSTFNMLMS 445 (1060)
T ss_pred HHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC-CHHHHHHHHHHcC--------------CCCHHHHHHHHH
Confidence 3456677777777766543211100000111222233333 3444555555543 289999999998
Q ss_pred hh---hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003028 336 QL---QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLN 412 (856)
Q Consensus 336 ~l---~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~ 412 (856)
.+ ++.+.|+++|+.|.+ .|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|+++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~-~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 76 688899999999974 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003028 413 EALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQA--AGLSPDTFTYSVIINCLGKAGHLQAAHQLFCE 490 (856)
Q Consensus 413 ~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~--~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~ 490 (856)
+|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++||.+|++.|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 57899999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003028 491 MVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDE 570 (856)
Q Consensus 491 m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 570 (856)
|.+.|+.|+..+|+.||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003028 571 PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCC 650 (856)
Q Consensus 571 ~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~ 650 (856)
.+|+.||.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCC-----------------------CCcccHHHHHHHHHHHHhcCCCC
Q 003028 651 TEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPG-----------------------PDGQNVRDHVGSFLEMMHSEDRE 707 (856)
Q Consensus 651 ~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~-----------------------~~~~~~~~~a~~l~~~~~~~~~~ 707 (856)
++.|++++|..+++.|.+.|..++..++..+... .....+.+.|..+++.|...+..
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999886554332211100 00011234455555555555544
Q ss_pred ch-----------------------------------HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCcccccCce
Q 003028 708 SK-----------------------------------RGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMS 752 (856)
Q Consensus 708 ~~-----------------------------------~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~~Pd~~t~~~~~ 752 (856)
|+ ..+|++||+++++ ..++|+.+|++|...|+.|+...-..
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~--~~~~A~~l~~em~~~Gi~p~~~~~~~-- 920 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE--YDPRAFSLLEEAASLGVVPSVSFKKS-- 920 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc--ChHHHHHHHHHHHHcCCCCCcccccC--
Confidence 44 4556666666532 23689999999999999998764333
Q ss_pred eeeeccccccchhhHHHHHHHHHHHHHHHHHcCC-CCCceeeeeecccc-----C--CcccchHHHHHHHHHHhhcCCCC
Q 003028 753 YWLINLHVMSDGTAVIALSRTLAWFRKQMLISGV-GPSRIDIVTGWGRR-----S--RVTGTSLVRQAVQELLHMFSFPF 824 (856)
Q Consensus 753 ~w~~~~~~l~~g~a~~g~~~~l~~~~~~m~~~g~-~Pd~it~i~~l~~~-----~--~~~~~~~l~~a~~~ll~~~~~pf 824 (856)
-|.++++.|..|.|...+..|+.-+. +..+.|. .|.....+..=+++ | ....++.+.++++.+|..+..||
T Consensus 921 ~~~~d~~~~~~~aa~~~l~~wl~~~~-~~~~~g~~lp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~ 999 (1060)
T PLN03218 921 PIVIDAEELPVFAAEVYLLTILKGLK-HRLAAGAKLPNVTILLPTEKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLPY 999 (1060)
T ss_pred ceEEEcccCcchhHHHHHHHHHHHHH-HHHhccCcCCcceeeeccccceeeccCCchhHHHHHHHHHHHHHHHHHhCCCC
Confidence 79999999999999999999999995 4556664 44443312221221 1 11223558899999999999999
Q ss_pred cccCCCceEEEecchHHHHHhhhc
Q 003028 825 FTENGNSGCFVGCGEPLNKWLLQS 848 (856)
Q Consensus 825 ~~~~~~~gc~v~~~~~~~~wl~~~ 848 (856)
.-.... |+|...+..+..||+..
T Consensus 1000 ~~~~~~-g~~~~~~~~~~~wl~~~ 1022 (1060)
T PLN03218 1000 QGSESH-GKLRINGLSLRRWFQPK 1022 (1060)
T ss_pred CCCCCC-CeEEeccHHHHHHhccc
Confidence 998878 99999999999999763
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-57 Score=554.16 Aligned_cols=515 Identities=17% Similarity=0.236 Sum_probs=437.5
Q ss_pred chhhhHhhhcCCchHHHHHHHHHhccCCchHHHHHhhcCC-CCCHHHHHHHHHhh---hChhHHHHHHHHHHHhCCCCCC
Q 003028 284 LAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTNY-SMDAYQANQVLKQL---QDHTVALGFFNWLRRQAGFKHD 359 (856)
Q Consensus 284 ~~~~~r~~~~~~~~~~~i~~iL~~~~~~~~~~~~l~~~~~-~~~~~~~~~vL~~l---~~~~~Al~~f~~m~~~~g~~pd 359 (856)
...++.++++.|+ .+.+..++++|. ..+. .++...+..++..+ +....|+.+|+.|.. ||
T Consensus 373 ~~~~y~~l~r~G~-l~eAl~Lfd~M~----------~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd 436 (1060)
T PLN03218 373 YIDAYNRLLRDGR-IKDCIDLLEDME----------KRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PT 436 (1060)
T ss_pred HHHHHHHHHHCcC-HHHHHHHHHHHH----------hCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CC
Confidence 3456666666655 566667777664 3343 45555666665544 578899999988863 89
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI 439 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~ 439 (856)
..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.||.+
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcCCHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVN--QGCIPNLVTYNIMIALQAKARNYQ 517 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~--~g~~pd~~ty~~Li~~~~~~g~~~ 517 (856)
|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++||.+|++.|+++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999999999999999999999999999986 578999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 518 SALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 518 ~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
+|+++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||++|++.|++++|.++|++|.
T Consensus 597 eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHH
Q 003028 598 QAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFL 677 (856)
Q Consensus 598 ~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~ 677 (856)
+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|..++++|...|..++...
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998766655
Q ss_pred HhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH----hCC-------------------ChhHHHHHHH
Q 003028 678 LSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLH----KSG-------------------LKEEAGSVWE 734 (856)
Q Consensus 678 ~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~----k~G-------------------~~eeA~~lf~ 734 (856)
+..+...+...+..+.+..+++.|...+..|+..+|++|+++|. +++ ..++|+.+|+
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 55444444444567889999999999999999999999998743 332 2367999999
Q ss_pred HHHhCCCCCCcccccCceeeeeccccccchhhHHHHHHHHHHHHHHHHHcCCCCCceeeeeeccccCCcccchHHHHHHH
Q 003028 735 VAAQKNVYPDAVKEKGMSYWLINLHVMSDGTAVIALSRTLAWFRKQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQ 814 (856)
Q Consensus 735 ~m~~~~~~Pd~~t~~~~~~w~~~~~~l~~g~a~~g~~~~l~~~~~~m~~~g~~Pd~it~i~~l~~~~~~~~~~~l~~a~~ 814 (856)
+|.+.|+.||..||.. ++.+....+....+..+++.|...+..|+..++.+.+-.++. ..++|+.
T Consensus 837 eM~~~Gi~Pd~~T~~~----------vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~-----~~~~A~~ 901 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQ----------VLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE-----YDPRAFS 901 (1060)
T ss_pred HHHHCCCCCCHHHHHH----------HHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc-----ChHHHHH
Confidence 9999999999887754 223333323223333344566666666776654333322322 1357998
Q ss_pred HHHhhcCCCCcccCC
Q 003028 815 ELLHMFSFPFFTENG 829 (856)
Q Consensus 815 ~ll~~~~~pf~~~~~ 829 (856)
.+..|...++.|+..
T Consensus 902 l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 902 LLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHcCCCCCcc
Confidence 888888888888864
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=572.53 Aligned_cols=529 Identities=15% Similarity=0.169 Sum_probs=472.7
Q ss_pred CchhhhHhhhcCCchHHHHHHHHHhccCCchHHHHHhhcCCCCCHHHHHHHHHhh---hChhHHHHHHHHHHHhCCCCCC
Q 003028 283 GLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQVLKQL---QDHTVALGFFNWLRRQAGFKHD 359 (856)
Q Consensus 283 ~~~~~~r~~~~~~~~~~~i~~iL~~~~~~~~~~~~l~~~~~~~~~~~~~~vL~~l---~~~~~Al~~f~~m~~~~g~~pd 359 (856)
.+..+++.++..|. .+.+..+++++. ..+..|+..++..+++.+ +....|..++..+.+ .+..++
T Consensus 53 ~~n~~i~~l~~~g~-~~~A~~l~~~m~----------~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~ 120 (857)
T PLN03077 53 DSNSQLRALCSHGQ-LEQALKLLESMQ----------ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS-SHPSLG 120 (857)
T ss_pred hHHHHHHHHHhCCC-HHHHHHHHHHHH----------hcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHH-cCCCCC
Confidence 34567788888876 555666666653 567789999988888766 467789999999874 677899
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI 439 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~ 439 (856)
...+|+||.+|++.|+++.|.++|++|.+ ||..+||+||.+|++.|++++|+++|++|...|+.||..||+.+|.+
T Consensus 121 ~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~ 196 (857)
T PLN03077 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196 (857)
T ss_pred chHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 99999999999999999999999999974 79999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSA 519 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A 519 (856)
|++.+++..+.+++..|.+.|+.||..+|++||.+|+++|++++|.++|++|.. ||.++||+||.+|++.|++++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eA 272 (857)
T PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEG 272 (857)
T ss_pred hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999975 7999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 520 LKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA 599 (856)
Q Consensus 520 ~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~ 599 (856)
+++|++|...|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.||.+|++.|++++|.++|++|.
T Consensus 273 l~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-- 350 (857)
T PLN03077 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-- 350 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHh
Q 003028 600 GLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLS 679 (856)
Q Consensus 600 g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~ 679 (856)
.||..+||.||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|...+..+..
T Consensus 351 --~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n 428 (857)
T PLN03077 351 --TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428 (857)
T ss_pred --CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999999876655544
Q ss_pred cCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCccccc----------
Q 003028 680 MPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEK---------- 749 (856)
Q Consensus 680 l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~~Pd~~t~~---------- 749 (856)
.+.......+..+.|..+++.|.. ++..+||++|.+|++.|+.++|+++|++|.. ++.||..|+.
T Consensus 429 ~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 429 ALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIG 503 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhc
Confidence 333322233457788888888764 4566799999999999999999999999975 5888887653
Q ss_pred -------------------------------------------------CceeeeeccccccchhhHHHHHHHHHHHHHH
Q 003028 750 -------------------------------------------------GMSYWLINLHVMSDGTAVIALSRTLAWFRKQ 780 (856)
Q Consensus 750 -------------------------------------------------~~~~w~~~~~~l~~g~a~~g~~~~l~~~~~~ 780 (856)
+.++|+ .|+.+++.+|..+.+..++++
T Consensus 504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n----~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWN----ILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHH----HHHHHHHHcCCHHHHHHHHHH
Confidence 234466 588999999988766666699
Q ss_pred HHHcCCCCCceeeeeeccccCCcccchHHHHHHHHHHhhc-CCCCcccCCCceEEE------ecchHHHHHhhh
Q 003028 781 MLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLHMF-SFPFFTENGNSGCFV------GCGEPLNKWLLQ 847 (856)
Q Consensus 781 m~~~g~~Pd~it~i~~l~~~~~~~~~~~l~~a~~~ll~~~-~~pf~~~~~~~gc~v------~~~~~~~~wl~~ 847 (856)
|.+.|+.||.+||...+..|+ +.|.+++|.++|..|. ..++.|+..+|+|++ |..+++.+++++
T Consensus 580 M~~~g~~Pd~~T~~~ll~a~~---~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 580 MVESGVNPDEVTFISLLCACS---RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHcCCCCCcccHHHHHHHHh---hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999998887764 5788999999999888 599999999999999 888999998876
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-58 Score=567.46 Aligned_cols=539 Identities=17% Similarity=0.169 Sum_probs=474.7
Q ss_pred cCcccccccccCCCCCCchhhhhhhhhccCCCCcCCCCCCCchhhhHhhhcCCchHHHHHHHHHhccCCchHHHHHhhcC
Q 003028 243 AHSNRLNSNFKSNLQPSDAKVVECVSERFSKPSREMKIPAGLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTN 322 (856)
Q Consensus 243 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~iL~~~~~~~~~~~~l~~~~ 322 (856)
+.....++-+..+...|....+..+++.+..| ....|..++.++++.|. .+.+..+++++. ..|
T Consensus 119 ~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~-----d~~~~n~li~~~~~~g~-~~~A~~~f~~M~----------~~g 182 (857)
T PLN03077 119 LGVRLGNAMLSMFVRFGELVHAWYVFGKMPER-----DLFSWNVLVGGYAKAGY-FDEALCLYHRML----------WAG 182 (857)
T ss_pred CCchHHHHHHHHHHhCCChHHHHHHHhcCCCC-----CeeEHHHHHHHHHhCCC-HHHHHHHHHHHH----------HcC
Confidence 33334455556667888888899999888754 23468889999999876 677777887774 458
Q ss_pred CCCCHHHHHHHHHhh---hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 323 YSMDAYQANQVLKQL---QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYN 399 (856)
Q Consensus 323 ~~~~~~~~~~vL~~l---~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~ 399 (856)
+.||.++++.+++.+ ++...+.+++..|.+ .|+.||..+||+||.+|+++|++++|.++|++|.+ ||.++||
T Consensus 183 ~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n 257 (857)
T PLN03077 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR-FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWN 257 (857)
T ss_pred CCCChhHHHHHHHHhCCccchhhHHHHHHHHHH-cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhH
Confidence 999999999999987 466789999999984 79999999999999999999999999999999974 7999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 003028 400 RLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAG 479 (856)
Q Consensus 400 ~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g 479 (856)
+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.||..+||+||.+|+++|
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 337 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003028 480 HLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFA 559 (856)
Q Consensus 480 ~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~ 559 (856)
++++|.++|++|.. ||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++
T Consensus 338 ~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 338 SWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred CHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999974 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003028 560 EMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS 639 (856)
Q Consensus 560 ~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd 639 (856)
.|.+.|+.|+..+|+.||++|+++|++++|.++|++|. .+|.++||.||.+|++.|+.++|+++|++|.. ++.||
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd 488 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPN 488 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCC
Confidence 99999999999999999999999999999999999996 47999999999999999999999999999986 69999
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 003028 640 LQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDF 719 (856)
Q Consensus 640 ~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~ 719 (856)
..||..+|.+|++.|.++.+.+++..+.+.|...+.++...+.......+..+.+..+++.+ .++..+||++|.+
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~ 563 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG 563 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH
Confidence 99999999999999999999999999999998766555443333222234566677777765 5688899999999
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCcccccCceeeeeccccccchhhHHHHHHHHHHHHHHHH-HcCCCCCcee---eee
Q 003028 720 LHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLINLHVMSDGTAVIALSRTLAWFRKQML-ISGVGPSRID---IVT 795 (856)
Q Consensus 720 y~k~G~~eeA~~lf~~m~~~~~~Pd~~t~~~~~~w~~~~~~l~~g~a~~g~~~~l~~~~~~m~-~~g~~Pd~it---~i~ 795 (856)
|++.|+.++|+++|++|.+.|+.||.+||.. ++.++...|..+....++++|. ..|+.|+..+ ++.
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~----------ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFIS----------LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHH----------HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 9999999999999999999999999988754 5566777777666666668998 7899999854 677
Q ss_pred eccccCCcccchHHHHHHHHHHhhcCCCCcccCCCceEEE
Q 003028 796 GWGRRSRVTGTSLVRQAVQELLHMFSFPFFTENGNSGCFV 835 (856)
Q Consensus 796 ~l~~~~~~~~~~~l~~a~~~ll~~~~~pf~~~~~~~gc~v 835 (856)
++++.|+ +++|.+.+..| |+.|+...++.++
T Consensus 634 ~l~r~G~------~~eA~~~~~~m---~~~pd~~~~~aLl 664 (857)
T PLN03077 634 LLGRAGK------LTEAYNFINKM---PITPDPAVWGALL 664 (857)
T ss_pred HHHhCCC------HHHHHHHHHHC---CCCCCHHHHHHHH
Confidence 7777776 89999866553 6788866544443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-53 Score=511.20 Aligned_cols=478 Identities=17% Similarity=0.224 Sum_probs=420.4
Q ss_pred CCCchhhhHhhhcCCchHHHHHHHHHhccCCchHHHHHhhcCCCCCHHHHHHHHHhh---hChhHHHHHHHHHHHhCCCC
Q 003028 281 PAGLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQVLKQL---QDHTVALGFFNWLRRQAGFK 357 (856)
Q Consensus 281 ~~~~~~~~r~~~~~~~~~~~i~~iL~~~~~~~~~~~~l~~~~~~~~~~~~~~vL~~l---~~~~~Al~~f~~m~~~~g~~ 357 (856)
...|..++.++...|+ .+.+..+++.+. ...+..|+..+++.++..+ ++.+.|.+++..|.+ .|+.
T Consensus 87 ~~~~~~~i~~l~~~g~-~~~Al~~f~~m~---------~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~-~g~~ 155 (697)
T PLN03081 87 GVSLCSQIEKLVACGR-HREALELFEILE---------AGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES-SGFE 155 (697)
T ss_pred ceeHHHHHHHHHcCCC-HHHHHHHHHHHH---------hcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCC
Confidence 3467778888888776 455556666553 1234679999999999876 577889999999974 7999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 358 HDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 358 pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
||..+||.|+++|+++|+++.|.++|++|.+ ||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 156 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll 231 (697)
T PLN03081 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231 (697)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHH
Confidence 9999999999999999999999999999974 899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003028 438 DIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQ 517 (856)
Q Consensus 438 ~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~ 517 (856)
.+|++.|..+.+.+++..+.+.|+.+|..+|++||++|+++|++++|.++|++|.+ +|.++||+||.+|++.|+++
T Consensus 232 ~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~ 307 (697)
T PLN03081 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSE 307 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999975 69999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 518 SALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 518 ~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
+|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.||++|+++|++++|.++|++|.
T Consensus 308 eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH-cCCChHHH
Q 003028 598 QAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAV-SGHPAHMF 676 (856)
Q Consensus 598 ~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~-~g~~~~~~ 676 (856)
.||..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.+|.+|++.|..+++..+++.|.+ .|..+...
T Consensus 388 ----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 388 ----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred ----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 4899999999999999999999999999999999999999999999999999999999999999986 47655443
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCcccccCceeeee
Q 003028 677 LLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLI 756 (856)
Q Consensus 677 ~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~~Pd~~t~~~~~~w~~ 756 (856)
.+..+.......+..++|..+++.+ +..|+..+|++|+.+|.+.|+++.|..+++++.+ ..|+... .+.
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~-----~y~- 532 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLN-----NYV- 532 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCc-----chH-
Confidence 3333333333344567777776654 5678899999999999999999999999999964 4454321 222
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHcCCCCCc-eeeee
Q 003028 757 NLHVMSDGTAVIALSRTLAWFRKQMLISGVGPSR-IDIVT 795 (856)
Q Consensus 757 ~~~~l~~g~a~~g~~~~l~~~~~~m~~~g~~Pd~-it~i~ 795 (856)
.++..++..|..+.+..++++|.+.|+.... .+++.
T Consensus 533 ---~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~ 569 (697)
T PLN03081 533 ---VLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIE 569 (697)
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEE
Confidence 3677888888887777888999999986443 44443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-51 Score=497.29 Aligned_cols=520 Identities=17% Similarity=0.203 Sum_probs=436.6
Q ss_pred CcccCcccccccccCCCCCCchhhhhhhhhccCCCCcCCCCCCCchhhhHhhhcCCchHHHHHHHHHhccCCchHHHHHh
Q 003028 240 RSKAHSNRLNSNFKSNLQPSDAKVVECVSERFSKPSREMKIPAGLAPFSRHFASTGNVVESVSRILRQWKWGPLAEEALG 319 (856)
Q Consensus 240 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~iL~~~~~~~~~~~~l~ 319 (856)
..+.+..++++.+..+...|....+..+++.+............+..+++..+..++ .+....++..+ .
T Consensus 82 ~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~-~~~a~~l~~~m----------~ 150 (697)
T PLN03081 82 QIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKS-IRCVKAVYWHV----------E 150 (697)
T ss_pred cCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHH----------H
Confidence 344455678888888888888888888887764321111111233445555555443 44444444443 4
Q ss_pred hcCCCCCHHHHHHHHHhh---hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003028 320 NTNYSMDAYQANQVLKQL---QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVV 396 (856)
Q Consensus 320 ~~~~~~~~~~~~~vL~~l---~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ 396 (856)
..|+.|+..+++.++..+ ++.+.|.++|+.|.+ ||..+||++|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 151 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~ 225 (697)
T PLN03081 151 SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225 (697)
T ss_pred HhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh
Confidence 678899999999999876 688999999999964 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG 476 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~ 476 (856)
+|+.++.+|++.|..+.+.+++..|.+.|+.||..+|++||++|++.|++++|.++|++|. .+|..+||+||.+|+
T Consensus 226 t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~ 301 (697)
T PLN03081 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYA 301 (697)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999995 469999999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003028 477 KAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEA 556 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~ 556 (856)
+.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.+
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CC
Q 003028 557 VFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN-LG 635 (856)
Q Consensus 557 l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~-~g 635 (856)
+|++|.+ ||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|.+.|++++|.++|+.|.+ .|
T Consensus 382 vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 382 VFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 9999864 688999999999999999999999999999999999999999999999999999999999999986 69
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHH-HHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHH
Q 003028 636 LKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMF-LLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVD 714 (856)
Q Consensus 636 ~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~-~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 714 (856)
+.|+..+|++++++|++.|++++|..+++.| +..++.. +..++..+.. .+..+.+..+.+.+...++. +..+|+
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~-~g~~~~a~~~~~~l~~~~p~-~~~~y~ 532 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRI-HKNLELGRLAAEKLYGMGPE-KLNNYV 532 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHhCCCCC-CCcchH
Confidence 9999999999999999999999999887765 3332222 2222222212 23345666666666544332 456899
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCCcccccCceeeee---ccccccchhhHH----HHHHHHHHHHHHHHHcCCC
Q 003028 715 AVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLI---NLHVMSDGTAVI----ALSRTLAWFRKQMLISGVG 787 (856)
Q Consensus 715 aLi~~y~k~G~~eeA~~lf~~m~~~~~~Pd~~t~~~~~~w~~---~~~~l~~g~a~~----g~~~~l~~~~~~m~~~g~~ 787 (856)
.|+++|++.|++++|.+++++|.++|+.+. ...+|.- .+|.+..+...| ...+.+..+..+|.+.|..
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~-----~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~ 607 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRKGLSMH-----PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYV 607 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCccC-----CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999998643 2356742 257777665433 2345677778999999999
Q ss_pred CCceee
Q 003028 788 PSRIDI 793 (856)
Q Consensus 788 Pd~it~ 793 (856)
||...+
T Consensus 608 ~~~~~~ 613 (697)
T PLN03081 608 AEENEL 613 (697)
T ss_pred CCcchh
Confidence 997543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-20 Score=228.31 Aligned_cols=389 Identities=9% Similarity=0.013 Sum_probs=228.3
Q ss_pred hhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALD 416 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ 416 (856)
.++++.|+.+++.+... ...+..+|..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+
T Consensus 444 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred cCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 35666666666666542 23345566666666666666666666666665532 2344555666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 003028 417 VFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGC 496 (856)
Q Consensus 417 lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~ 496 (856)
.|+++.... +.+..++..+...+.+.|+.++|..+++++.+.+ +.+...+..+...|.+.|++++|..+++.+.+..
T Consensus 521 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 521 RFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 666665543 3455566666666666666666666666665543 3345556666666666666666666666665532
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 003028 497 IPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLL 576 (856)
Q Consensus 497 ~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~L 576 (856)
+.+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+..++..+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 2355666666666666666666666666665542 2234455566666666666666666666666533 2345566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 003028 577 VDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSP 656 (856)
Q Consensus 577 i~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~ 656 (856)
+..+...|++++|..+++.+.+.. +.+...+..+...|...|++++|++.|+++.+. .|+..++..+..++...|++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCH
Confidence 666666666666666666666543 345556666666666666666666666666653 34445555666666666666
Q ss_pred chHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 003028 657 YDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVA 736 (856)
Q Consensus 657 ~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m 736 (856)
+++...++.+.+..+........+...+...++ .+.+...++.+....+ .+..+++.++..|.+.|+ .+|+.+++++
T Consensus 753 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD-YDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 666666666665555433333322222222222 2333334443333322 244556666666666666 6666666666
Q ss_pred HhC
Q 003028 737 AQK 739 (856)
Q Consensus 737 ~~~ 739 (856)
.+.
T Consensus 830 ~~~ 832 (899)
T TIGR02917 830 LKL 832 (899)
T ss_pred Hhh
Confidence 554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-19 Score=226.09 Aligned_cols=387 Identities=13% Similarity=0.050 Sum_probs=196.6
Q ss_pred hhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALD 416 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ 416 (856)
.++++.|.+.|+.+.... +.+..++..+...+.+.|++++|..+|+++.+.+ +.+...+..++..|.+.|++++|.+
T Consensus 512 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred CCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHH
Confidence 345555555555554321 2234455555555555555555555555554432 2344455555555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 003028 417 VFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGC 496 (856)
Q Consensus 417 lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~ 496 (856)
+++++.... +.+..+|..+..+|.+.|++++|...|+++.+.. +.+...+..+..+|.+.|++++|..+|+.+.+..
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 665 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK- 665 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 555555432 3445555555555555555555555555555432 2244455555555555555555555555555432
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 003028 497 IPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLL 576 (856)
Q Consensus 497 ~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~L 576 (856)
+.+..+|..++..+...|++++|..+++.+.... +.+...+..+...+...|++++|...|..+.... |+..++..+
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l 742 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKL 742 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHH
Confidence 1234555555555555555555555555555443 2233444555555555555566655555555433 233445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 003028 577 VDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSP 656 (856)
Q Consensus 577 i~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~ 656 (856)
..++.+.|++++|.+.++.+.+.. +.+...++.+...|...|++++|.++|+++.+.. ..+...+..+...+...|+
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-
Confidence 555555566666555555555432 3345555555555555566666666665555532 2334455555555555555
Q ss_pred chHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 003028 657 YDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVA 736 (856)
Q Consensus 657 ~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m 736 (856)
.+|...++......+.....+..+...+...++ .+.+..+++.+...++. +..++..++.+|.+.|++++|.++|++|
T Consensus 820 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 820 PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE-ADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555544443333332222211112222 23333333333333322 4445555566666666666666666555
Q ss_pred H
Q 003028 737 A 737 (856)
Q Consensus 737 ~ 737 (856)
.
T Consensus 898 ~ 898 (899)
T TIGR02917 898 L 898 (899)
T ss_pred h
Confidence 3
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-17 Score=186.50 Aligned_cols=296 Identities=15% Similarity=0.167 Sum_probs=196.4
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPN---VVTYNRLIHSYGRANYLNEA 414 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd---~~ty~~Li~~~~~~g~~~~A 414 (856)
++++.|+..|..+.+.. ..+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|++++|
T Consensus 49 ~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred CChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 56777777777776531 22445677777777777777777777777765421111 24566777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHH
Q 003028 415 LDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPD----TFTYSVIINCLGKAGHLQAAHQLFCE 490 (856)
Q Consensus 415 ~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd----~~ty~~Li~~y~k~g~~~~A~~lf~~ 490 (856)
+.+|+++.+.. +.+..+++.++.++.+.|++++|.++++.+.+.+..+. ...+..+...+.+.|++++|.++|++
T Consensus 127 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 127 EELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 77777776542 44566777777777777777777777777776543221 12344566667777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003028 491 MVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDE 570 (856)
Q Consensus 491 m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 570 (856)
+.+.. +.+...+..+...|.+.|++++|+++|+++...+......++..+..+|...|++++|...++.+.+.. |+.
T Consensus 206 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~ 282 (389)
T PRK11788 206 ALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGA 282 (389)
T ss_pred HHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCc
Confidence 76543 224556666777777777777777777777654322223456667777777777777777777776643 455
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHH
Q 003028 571 PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR---VGQLSDAYHLLQGMLNLGLKPSLQ 641 (856)
Q Consensus 571 ~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~---~g~~e~A~~l~~~M~~~g~~Pd~~ 641 (856)
..+..++..+.+.|++++|..+|+++.+. .|+..+++.++..+.. .|+.++++.+|++|.+.++.|+..
T Consensus 283 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 283 DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 55677777777777777777777776654 4777777777766664 447777777777777766665554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-17 Score=184.05 Aligned_cols=296 Identities=13% Similarity=0.048 Sum_probs=244.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc
Q 003028 367 VGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD---RVTYCTLIDIHAKA 443 (856)
Q Consensus 367 i~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd---~~ty~~Ll~~~~k~ 443 (856)
...+...|++++|...|.++.+.+ +.+..+|..+...|...|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445678899999999999999863 33567899999999999999999999999987532222 35688889999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHH
Q 003028 444 GFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPN----LVTYNIMIALQAKARNYQSA 519 (856)
Q Consensus 444 g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd----~~ty~~Li~~~~~~g~~~~A 519 (856)
|++++|..+|+++.+. .+.+..+++.++..|.+.|++++|.++|+.+.+.+..+. ...|..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999876 345788999999999999999999999999988654332 22456778888999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 520 LKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA 599 (856)
Q Consensus 520 ~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~ 599 (856)
+.+|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998754 22456777888999999999999999999987643333567889999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHc
Q 003028 600 GLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTE---ARSPYDMGFCHELMAVS 669 (856)
Q Consensus 600 g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~---~g~~~~a~~l~~~m~~~ 669 (856)
.|+...+..++..|.+.|++++|..+|+++++. .|+..++..++..+.. .|+.+++..+++.+.+.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 477777899999999999999999999999874 7999999988887664 34666676666666554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-13 Score=164.17 Aligned_cols=388 Identities=13% Similarity=0.045 Sum_probs=275.7
Q ss_pred hhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003028 336 QLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEAL 415 (856)
Q Consensus 336 ~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 415 (856)
..++++.|+..|..... ..|+...|..+..+|.+.|++++|.+.++...+.. +.+...|..+..+|...|++++|+
T Consensus 139 ~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~ 214 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADAL 214 (615)
T ss_pred HcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34789999999998875 45788889999999999999999999999998752 235678888999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHH--------------------------
Q 003028 416 DVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGL--SPDTFT-------------------------- 467 (856)
Q Consensus 416 ~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~--~pd~~t-------------------------- 467 (856)
..|......+ ..+......++.-+... .+.....+..+... .|....
T Consensus 215 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 215 LDLTASCIID-GFRNEQSAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHhC-CCccHHHHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 9988776543 12222222222222111 11111111111100 000000
Q ss_pred -HHHHHHHH------HccCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHH
Q 003028 468 -YSVIINCL------GKAGHLQAAHQLFCEMVNQG-CIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD-KVT 537 (856)
Q Consensus 468 -y~~Li~~y------~k~g~~~~A~~lf~~m~~~g-~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd-~~t 537 (856)
-..++..+ ...+++++|.+.|+...+.+ ..| ....|+.+...+...|++++|+..|++..+. .|+ ...
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~ 367 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQS 367 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHH
Confidence 00011111 22467899999999998764 223 4567888888899999999999999998875 344 557
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 538 YSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR 617 (856)
Q Consensus 538 y~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~ 617 (856)
|..+...+...|++++|...|+.+.+.. ..+..+|..+...|...|++++|...|++..+.. +.+...|..+...|.+
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHH
Confidence 8888888999999999999999998764 3467889999999999999999999999998753 4467788889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHH------HHhcCCCCCCcccH
Q 003028 618 VGQLSDAYHLLQGMLNLGLKPS-LQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMF------LLSMPSPGPDGQNV 690 (856)
Q Consensus 618 ~g~~e~A~~l~~~M~~~g~~Pd-~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~------~~~l~~~~~~~~~~ 690 (856)
.|++++|+..|++.++. .|+ ...|..+-..+...|++++|...++...+..+..... +...........+.
T Consensus 446 ~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 446 EGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred CCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 99999999999999873 454 5777888888999999999999999887765532111 00000000011124
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 003028 691 RDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQK 739 (856)
Q Consensus 691 ~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~ 739 (856)
.+.+..+++.....++. +...+..++..|...|++++|+++|++..+.
T Consensus 524 ~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 524 FIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45555566554444433 3446889999999999999999999998765
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.3e-13 Score=169.41 Aligned_cols=397 Identities=10% Similarity=0.012 Sum_probs=252.5
Q ss_pred HhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHH------------H
Q 003028 335 KQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQP-NVVTYNR------------L 401 (856)
Q Consensus 335 ~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~p-d~~ty~~------------L 401 (856)
...++++.|+..|+...+.. ..+...+..|..++.+.|++++|...|++..+..-.. +...|.. +
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 34578899999999887632 2367788899999999999999999999988753211 1122222 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 003028 402 IHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHL 481 (856)
Q Consensus 402 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~ 481 (856)
...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|+++.+.. +.+...+..+...|. .++.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCH
Confidence 345678899999999999998764 4566778888899999999999999999998753 234455555554443 2344
Q ss_pred HHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 003028 482 QAAHQLFCEMVNQGCI--------PNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDE 553 (856)
Q Consensus 482 ~~A~~lf~~m~~~g~~--------pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~ 553 (856)
++|..+++.+...... .....+..+...+...|++++|++.|++..+... -+...+..+...|...|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 5555554433211000 0011233344444455555555555555544321 123334444445555555555
Q ss_pred HHHHHHHHHHcCCCCCHhhH--------------------------------------------HHHHHHHHhcCCHHHH
Q 003028 554 AEAVFAEMRRKNWVPDEPVY--------------------------------------------GLLVDLWGKAGNVRKA 589 (856)
Q Consensus 554 A~~l~~~m~~~g~~pd~~~y--------------------------------------------~~Li~~~~k~g~~~~A 589 (856)
|...++.+.+... .+...+ ..+...+...|+.++|
T Consensus 514 A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 5555555443221 111111 2234455566666777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003028 590 WEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVS 669 (856)
Q Consensus 590 ~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~ 669 (856)
..+++. .+.+...+..+...|.+.|++++|++.|++.++.. ..+...+..+...+...|+.++|...++.+...
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 666651 24566777889999999999999999999999842 234678888889999999999999999988876
Q ss_pred CCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCC-C-c---hHHHHHHHHHHHHhCCChhHHHHHHHHHHh-CCCCC
Q 003028 670 GHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDR-E-S---KRGLVDAVVDFLHKSGLKEEAGSVWEVAAQ-KNVYP 743 (856)
Q Consensus 670 g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~-~-~---~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~-~~~~P 743 (856)
.+........+...+...++ .+++..+++.+..... . + +..++..+...+.+.|++++|++.|++... .++.|
T Consensus 667 ~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGD-TAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCC-HHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 65433333322222222233 4555556665554322 1 2 334666778999999999999999998864 34555
Q ss_pred Cc
Q 003028 744 DA 745 (856)
Q Consensus 744 d~ 745 (856)
+.
T Consensus 746 ~~ 747 (1157)
T PRK11447 746 TR 747 (1157)
T ss_pred CC
Confidence 43
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-13 Score=164.46 Aligned_cols=339 Identities=10% Similarity=-0.011 Sum_probs=260.2
Q ss_pred hcCCCCCHHHHHHHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 320 NTNYSMDAYQANQVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYN 399 (856)
Q Consensus 320 ~~~~~~~~~~~~~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~ 399 (856)
..+..-....+..-+..-+++..|+.+++.......- +...+..++..+...|+++.|...|+.+.+.. +.+...|.
T Consensus 38 ~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~ 114 (656)
T PRK15174 38 SAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVL 114 (656)
T ss_pred hcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 3344444444444444447899999999988764433 33456666677778999999999999998752 33567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 003028 400 RLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAG 479 (856)
Q Consensus 400 ~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g 479 (856)
.+...+.+.|++++|.+.|+++.+.. +.+...+..+..++...|++++|...++.+...... +...+..+ ..+...|
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g 191 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKS 191 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcC
Confidence 88899999999999999999998753 445778888999999999999999999988766332 33344333 3478899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH----HH
Q 003028 480 HLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDE----AE 555 (856)
Q Consensus 480 ~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~----A~ 555 (856)
++++|..+++.+.+....++...+..+...+...|++++|+..|+++.... +.+...+..+...+...|++++ |.
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 999999999998776433455556666788899999999999999998764 2346677788888999999986 79
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003028 556 AVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLG 635 (856)
Q Consensus 556 ~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g 635 (856)
..|+...+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|+..|+++.+.
T Consensus 271 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~- 347 (656)
T PRK15174 271 EHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE- 347 (656)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 9999988754 3367788999999999999999999999998753 345667888899999999999999999999874
Q ss_pred CCCCHHHH-HHHHHHHHhcCCcchHHHHHHHHHHc
Q 003028 636 LKPSLQTY-TLLLSCCTEARSPYDMGFCHELMAVS 669 (856)
Q Consensus 636 ~~Pd~~ty-~~Ll~a~~~~g~~~~a~~l~~~m~~~ 669 (856)
.|+...+ ..+..++...|+.++|...++...+.
T Consensus 348 -~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 348 -KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred -CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5665433 33455678888888887776665544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-13 Score=149.45 Aligned_cols=402 Identities=15% Similarity=0.143 Sum_probs=316.8
Q ss_pred HHHHHHhhhChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHh
Q 003028 330 ANQVLKQLQDHTVALGFFNWLRRQAGFKH-DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNR-LIHSYGR 407 (856)
Q Consensus 330 ~~~vL~~l~~~~~Al~~f~~m~~~~g~~p-d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~-Li~~~~~ 407 (856)
+..+++.-++.+.|+..++.+.+. +| ....|..+..++...|+.+.|.+.|.+..+. .|+.....+ +-...-.
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKA 196 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHh
Confidence 345677778888999999988763 34 3567888999999999999999998888763 566555443 3344455
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHH
Q 003028 408 ANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPD-TFTYSVIINCLGKAGHLQAAHQ 486 (856)
Q Consensus 408 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd-~~ty~~Li~~y~k~g~~~~A~~ 486 (856)
.|++.+|...|.+..+.. +-=.+.|+.|-..+-..|+...|++.|++.... .|+ ...|-.|-+.|...+.++.|..
T Consensus 197 ~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHH
Confidence 788999999998887653 223567888888889999999999999998875 343 6788889999999999999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003028 487 LFCEMVNQGCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRK 564 (856)
Q Consensus 487 lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~ 564 (856)
.+.+.... .| ..+.|..|...|...|..|-|+..|++..+. .|+ ...|+.|..++-..|+..+|++.+......
T Consensus 274 ~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 274 CYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 99887764 33 5667888888999999999999999998875 455 568999999999999999999999998875
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HH
Q 003028 565 NWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPN-VPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL-QT 642 (856)
Q Consensus 565 g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd-~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~-~t 642 (856)
.. -.....+.|...|...|.+++|..+|....+ +.|. ...+|.|...|-++|++++|+..+++.+. +.|+. ..
T Consensus 350 ~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda 424 (966)
T KOG4626|consen 350 CP-NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADA 424 (966)
T ss_pred CC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHH
Confidence 43 3567788999999999999999999999887 3454 45789999999999999999999999986 88886 68
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q 003028 643 YTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHK 722 (856)
Q Consensus 643 y~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k 722 (856)
|+.+-..|...|+...|.+++...+..++...+....+...+.+.++..+++..+.+.++..+.-|+... -+..++--
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~c--Nllh~lq~ 502 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYC--NLLHCLQI 502 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhh--HHHHHHHH
Confidence 8888888999999999999999999999887777777777778888999999999998887766666542 33333322
Q ss_pred CCCh-------hHHHHHHHHHHhCCCCCCcccccC
Q 003028 723 SGLK-------EEAGSVWEVAAQKNVYPDAVKEKG 750 (856)
Q Consensus 723 ~G~~-------eeA~~lf~~m~~~~~~Pd~~t~~~ 750 (856)
-.+| ++-.++.+.-.++...|....+.+
T Consensus 503 vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~hs 537 (966)
T KOG4626|consen 503 VCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHS 537 (966)
T ss_pred HhcccchHHHHHHHHHHHHHHHhhhcCCccCcccc
Confidence 2222 344445555555666676655554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-13 Score=162.11 Aligned_cols=288 Identities=11% Similarity=0.051 Sum_probs=235.2
Q ss_pred hhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALD 416 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ 416 (856)
.++++.|+..|+.+..... .+...+..+..++.+.|++++|...|++..... +.+...|..+...+...|++++|..
T Consensus 89 ~g~~~~A~~~l~~~l~~~P--~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~ 165 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNV--CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAIS 165 (656)
T ss_pred cCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHH
Confidence 4799999999999986432 245578889999999999999999999998752 3467788999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 003028 417 VFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGC 496 (856)
Q Consensus 417 lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~ 496 (856)
.++.+.... +.+...+..+ ..+...|++++|..+++.+.+....++...+..+...+...|++++|...|+.......
T Consensus 166 ~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p 243 (656)
T PRK15174 166 LARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL 243 (656)
T ss_pred HHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999887654 2333344333 45788999999999999988764344555666677889999999999999999987643
Q ss_pred CCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh
Q 003028 497 IPNLVTYNIMIALQAKARNYQS----ALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPV 572 (856)
Q Consensus 497 ~pd~~ty~~Li~~~~~~g~~~~----A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 572 (856)
.+...+..+...|...|++++ |+..|++..... +.+...+..+...+...|++++|...+++..+.. +.+...
T Consensus 244 -~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a 320 (656)
T PRK15174 244 -DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYV 320 (656)
T ss_pred -CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 367788889999999999986 899999988753 2346688889999999999999999999999864 335667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003028 573 YGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPT-CNSLLSAFLRVGQLSDAYHLLQGMLNL 634 (856)
Q Consensus 573 y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t-~n~Li~ay~~~g~~e~A~~l~~~M~~~ 634 (856)
+..+..+|.+.|++++|...|+.+.+. .|+... +..+..++...|+.++|...|++..+.
T Consensus 321 ~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 321 RAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 788899999999999999999999875 355433 444677899999999999999999873
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9e-14 Score=152.68 Aligned_cols=367 Identities=18% Similarity=0.165 Sum_probs=305.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQP-NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYC-TL 436 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~-~L 436 (856)
-..+|..+.+++-..|++++|..++..+.+. .| .+..|..+..++...|+.+.|.+.|.+..+. .|+..... .+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~l 190 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcch
Confidence 3568999999999999999999999999985 44 6789999999999999999999999998865 56655443 34
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCC
Q 003028 437 IDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPN-LVTYNIMIALQAKARN 515 (856)
Q Consensus 437 l~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd-~~ty~~Li~~~~~~g~ 515 (856)
-..+-..|++++|...|.+.++.. +--...|+.|-..+-..|++..|...|++..+. .|+ ...|-.|-..|-..+.
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhc
Confidence 455556899999999999988763 223567888889999999999999999998875 343 5678889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 003028 516 YQSALKLYRDMQNAGFEPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYE 594 (856)
Q Consensus 516 ~~~A~~ll~~M~~~gi~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~ 594 (856)
+++|+..|.+.... .|+ ...|..+...|...|.+|.|...+++..+.... =...|+.|..++-..|++.+|...++
T Consensus 268 ~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 268 FDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred chHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHH
Confidence 99999999887764 455 567778888889999999999999999875422 35689999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCh
Q 003028 595 AMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL-QTYTLLLSCCTEARSPYDMGFCHELMAVSGHPA 673 (856)
Q Consensus 595 ~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~-~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~ 673 (856)
+..... +-.....+.|...|...|.+++|..+|...++ +.|.. ..++.|...|.+.|++++|..++++..+..+..
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f 421 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF 421 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH
Confidence 998752 34467889999999999999999999999987 66765 677888889999999999999999999999988
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003028 674 HMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKN 740 (856)
Q Consensus 674 ~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~ 740 (856)
...+..++..+...++...++..+.+.+.-.+.- ....+-|...|--.|.+.+|+.-+++..+..
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~--AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF--AEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH--HHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 8888888877776666666666666666644322 3456789999999999999999999988753
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.2e-12 Score=160.90 Aligned_cols=368 Identities=12% Similarity=0.006 Sum_probs=259.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHH---------
Q 003028 365 TMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEP-DRVTYC--------- 434 (856)
Q Consensus 365 ~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p-d~~ty~--------- 434 (856)
.+...+...|++++|...|++..+.. +.+...+..|...|.+.|++++|+..|++..+..-.. ....|.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 34566778899999999999998753 3378889999999999999999999999988753211 111121
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 435 ---TLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQA 511 (856)
Q Consensus 435 ---~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~ 511 (856)
.+...+.+.|++++|+..|+++++.. +.+...+..+...|...|++++|++.|++..+... .+...+..+...|.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 22446778999999999999999873 34677788889999999999999999999987532 24566777777764
Q ss_pred HcCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 003028 512 KARNYQSALKLYRDMQNAGFE--------PDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKA 583 (856)
Q Consensus 512 ~~g~~~~A~~ll~~M~~~gi~--------pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~ 583 (856)
.++.++|+.+++.+...... .....+..+...+...|++++|...|++..+... -+...+..+...|.+.
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQA 508 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 56789999888765332100 0112345566778889999999999999998642 3567788899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----------------------------
Q 003028 584 GNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNL----------------------------- 634 (856)
Q Consensus 584 g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~----------------------------- 634 (856)
|++++|...|+++.+.. +.+...+..+...+...++.++|+..++.+...
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 99999999999988642 224444433333344445555554444432110
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcC
Q 003028 635 ----------GLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSE 704 (856)
Q Consensus 635 ----------g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~ 704 (856)
....+...+..+...+.+.|+.++|...++...+..+........+...+...++ .+.+...++.+...
T Consensus 588 ~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~-~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 588 KEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD-LAAARAQLAKLPAT 666 (1157)
T ss_pred CHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHhcc
Confidence 1223445566677778899999999999999888877655555544433333333 44555555555443
Q ss_pred CCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003028 705 DRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKN 740 (856)
Q Consensus 705 ~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~ 740 (856)
.+. +..++..+..+|...|++++|.++|+++....
T Consensus 667 ~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 667 AND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 322 34556778889999999999999999988754
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-12 Score=155.59 Aligned_cols=400 Identities=12% Similarity=0.027 Sum_probs=286.5
Q ss_pred HHHHHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003028 329 QANQVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRA 408 (856)
Q Consensus 329 ~~~~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~ 408 (856)
.+..+..-.++.+.|++++..+... -..+...+..+...+.+.|++++|.++|++..+.. +.+...+..+...+...
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 3446666678999999999888641 23455578999999999999999999999988752 34577788888999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003028 409 NYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLF 488 (856)
Q Consensus 409 g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf 488 (856)
|++++|+..+++..+.. +.+.. +..+..++...|+.++|+..++++.+.. +-+...+..+..++...+..++|.+.+
T Consensus 97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 99999999999998763 44556 8888889999999999999999999873 335666677888888999999999988
Q ss_pred HHHHHcCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-CCCCCHH-HHH----HHHHHHHhc
Q 003028 489 CEMVNQGCIPNL------VTYNIMIALQA-----KARNY---QSALKLYRDMQNA-GFEPDKV-TYS----IVMEVLGHC 548 (856)
Q Consensus 489 ~~m~~~g~~pd~------~ty~~Li~~~~-----~~g~~---~~A~~ll~~M~~~-gi~pd~~-ty~----~ll~a~~~~ 548 (856)
+.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...
T Consensus 174 ~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 174 DDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 86654 2331 11222222222 22334 7788888888754 2233321 111 113455677
Q ss_pred CChHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHH
Q 003028 549 GYLDEAEAVFAEMRRKNWV-PDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRP---NVPTCNSLLSAFLRVGQLSDA 624 (856)
Q Consensus 549 g~~~~A~~l~~~m~~~g~~-pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~p---d~~t~n~Li~ay~~~g~~e~A 624 (856)
|++++|+..|+.+.+.+.. |+. ....+...|...|++++|..+|+++....-.. ....+..|..++.+.|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 9999999999999886532 332 22335778999999999999999987642111 134567777888999999999
Q ss_pred HHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccH
Q 003028 625 YHLLQGMLNLG-----------LKPSL---QTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNV 690 (856)
Q Consensus 625 ~~l~~~M~~~g-----------~~Pd~---~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~ 690 (856)
..+++++.... -.|+. ..+..+...+...|+.++|..+++.+....+........+...+...++
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~- 408 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW- 408 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-
Confidence 99999998742 12332 2445566678899999999999999988877665555544444333334
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003028 691 RDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKN 740 (856)
Q Consensus 691 ~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~ 740 (856)
.+.+...++......+. +..++-.++..+.+.|++++|..+++++.+..
T Consensus 409 ~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 409 PRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 45555555555544433 34456677778999999999999999998863
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.1e-12 Score=149.50 Aligned_cols=348 Identities=8% Similarity=-0.034 Sum_probs=210.9
Q ss_pred CCCCCHHHHH---HHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003028 322 NYSMDAYQAN---QVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTY 398 (856)
Q Consensus 322 ~~~~~~~~~~---~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty 398 (856)
...|+...+. ..+..+++++.|++.+....+.. ..+...|..+..+|...|++++|..-|.......- .+....
T Consensus 155 ~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~-~~~~~~ 231 (615)
T TIGR00990 155 ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDG-FRNEQS 231 (615)
T ss_pred hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CccHHH
Confidence 4456544332 23445689999999999987532 23566888999999999999999998877765321 122222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---------------------------HHHHHHHH------HHcCC
Q 003028 399 NRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVT---------------------------YCTLIDIH------AKAGF 445 (856)
Q Consensus 399 ~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t---------------------------y~~Ll~~~------~k~g~ 445 (856)
..++..+........+...++.-.. ..|.... -..++..+ ...++
T Consensus 232 ~~~~~~~l~~~a~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~ 309 (615)
T TIGR00990 232 AQAVERLLKKFAESKAKEILETKPE--NLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADES 309 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhh
Confidence 2222222111111112211111000 0000000 00001100 12356
Q ss_pred HHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 446 LDVAMDMYKKMQAAG-L-SPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIP-NLVTYNIMIALQAKARNYQSALKL 522 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g-~-~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~l 522 (856)
+++|.+.|++..+.+ . +.....|+.+...+...|++++|...|+...+. .| +...|..+...+...|++++|+..
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 778888888777654 1 223456677777777788888888888877764 23 355677777777888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003028 523 YRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLR 602 (856)
Q Consensus 523 l~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~ 602 (856)
|+++.+.. +.+...|..+...+...|++++|...|+...+.. +.+...+..+...+.+.|++++|...|++..+. .+
T Consensus 388 ~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P 464 (615)
T TIGR00990 388 FDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FP 464 (615)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CC
Confidence 88776653 2235667777777778888888888888877653 234566667777777888888888888877754 23
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-H-------HHHHHHHHHHhcCCcchHHHHHHHHHHcCCChH
Q 003028 603 PNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL-Q-------TYTLLLSCCTEARSPYDMGFCHELMAVSGHPAH 674 (856)
Q Consensus 603 pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~-~-------ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~ 674 (856)
.+...|+.+...|...|++++|++.|++.++. .|+. . .+...+..+...|++++|..+++......+...
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 45677778888888888888888888887763 2221 0 111111223335777778777777766665544
Q ss_pred HHHHhcC
Q 003028 675 MFLLSMP 681 (856)
Q Consensus 675 ~~~~~l~ 681 (856)
.....+.
T Consensus 543 ~a~~~la 549 (615)
T TIGR00990 543 IAVATMA 549 (615)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-11 Score=130.19 Aligned_cols=325 Identities=18% Similarity=0.272 Sum_probs=206.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 393 PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVII 472 (856)
Q Consensus 393 pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li 472 (856)
.+..+|.+||.++|+--..+.|.+++++-.+...+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 366778888888888888888888888877766677888888777654322 3367777888777888888888888
Q ss_pred HHHHccCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHc----CC---CC-CHHHHH
Q 003028 473 NCLGKAGHLQA----AHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQS-ALKLYRDMQNA----GF---EP-DKVTYS 539 (856)
Q Consensus 473 ~~y~k~g~~~~----A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~-A~~ll~~M~~~----gi---~p-d~~ty~ 539 (856)
.+..+.|+++. |.+++.+|++-|+.|...+|..+|..+++.++..+ |..++.++.+. .+ .| |..-|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 88888886654 45666777788888888888888887777766543 44444444332 12 22 345566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC----CCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 540 IVMEVLGHCGYLDEAEAVFAEMRRKN----WVPD---EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLL 612 (856)
Q Consensus 540 ~ll~a~~~~g~~~~A~~l~~~m~~~g----~~pd---~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li 612 (856)
..|..|.+..+.+.|.++...+.... +.|+ ..-|..+..+.|+....+.-..+|+.|.-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 77777777788888888777665431 1122 2235566777777777777788888777665667777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-Ccc--hHHHHHHHHHHcCCChHHHHHhcCCCCCCccc
Q 003028 613 SAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEAR-SPY--DMGFCHELMAVSGHPAHMFLLSMPSPGPDGQN 689 (856)
Q Consensus 613 ~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g-~~~--~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~ 689 (856)
++.--.|.++-.-+++..|+..|..-+.....-++..+++.. .+. +-+++-.. ...+. ..
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~-----------~ak~a------ad 503 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVA-----------FAKCA------AD 503 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHH-----------HHHHH------HH
Confidence 777777777777777777777664444444433444333332 110 00000000 00000 00
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003028 690 VRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKN 740 (856)
Q Consensus 690 ~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~ 740 (856)
..+..+.-...+...+. .....+...-.+.+.|+.++|.++|.-+..++
T Consensus 504 ~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 504 IKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 11111111222332222 34456788888999999999999999997654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-11 Score=148.34 Aligned_cols=374 Identities=13% Similarity=0.053 Sum_probs=265.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLID 438 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~ 438 (856)
+..-..-.+.+....|+.++|++++....... +.+...+..+...+.+.|++++|.++|++..+.. +.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44455567778889999999999999998621 4566679999999999999999999999988763 445777888889
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQS 518 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~ 518 (856)
++...|++++|+..++++.+. .+.+.. +..+..++...|+.++|...++++.+.... +...+..+..++...+..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 999999999999999999887 344566 888899999999999999999999986433 56666778888889999999
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHHc-CCCCCHh-hHH----HHHH
Q 003028 519 ALKLYRDMQNAGFEPDK------VTYSIVMEVLG-----HCGYL---DEAEAVFAEMRRK-NWVPDEP-VYG----LLVD 578 (856)
Q Consensus 519 A~~ll~~M~~~gi~pd~------~ty~~ll~a~~-----~~g~~---~~A~~l~~~m~~~-g~~pd~~-~y~----~Li~ 578 (856)
|++.++.... .|+. .....++.... ..+++ ++|...++.+.+. ...|+.. .+. ..+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 9998886553 2321 01112222221 12234 7788888888864 2223221 111 1133
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhc
Q 003028 579 LWGKAGNVRKAWEWYEAMLQAGLR-PN-VPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKP---SLQTYTLLLSCCTEA 653 (856)
Q Consensus 579 ~~~k~g~~~~A~~l~~~m~~~g~~-pd-~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~P---d~~ty~~Ll~a~~~~ 653 (856)
++...|++++|...|+.+.+.+-+ |+ ...| +...|...|++++|+.+|+++.+..-.. ....+..+..++.+.
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 456779999999999999976522 33 2333 5778999999999999999988643111 134566667778999
Q ss_pred CCcchHHHHHHHHHHcCCC------------hHH---HHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 003028 654 RSPYDMGFCHELMAVSGHP------------AHM---FLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVD 718 (856)
Q Consensus 654 g~~~~a~~l~~~m~~~g~~------------~~~---~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~ 718 (856)
+++++|...++.+....++ .+. ........+... +..+.+...++.+....+. +..++..+..
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~-g~~~eA~~~l~~al~~~P~-n~~l~~~lA~ 401 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS-NDLPQAEMRARELAYNAPG-NQGLRIDYAS 401 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 9999999999988876531 101 111111111112 2345555556655544333 4667889999
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCcc
Q 003028 719 FLHKSGLKEEAGSVWEVAAQKNVYPDAV 746 (856)
Q Consensus 719 ~y~k~G~~eeA~~lf~~m~~~~~~Pd~~ 746 (856)
.|...|++++|++.+++..+.. |+..
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~--Pd~~ 427 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLE--PRNI 427 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhC--CCCh
Confidence 9999999999999999998864 6654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-10 Score=139.18 Aligned_cols=392 Identities=11% Similarity=0.039 Sum_probs=243.3
Q ss_pred hChhHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDE--HTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEAL 415 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~--~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 415 (856)
+++..|+..|+.+.+. .|+. ..+ .++..+...|+.++|+.++++.... -.........+...|...|++++|+
T Consensus 48 Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 48 GDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred CCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5666666666666542 2221 122 5556666666666666666666521 0111222222244556666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 003028 416 DVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQG 495 (856)
Q Consensus 416 ~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g 495 (856)
++|+++.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++++.+..
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 6666666543 333455555566666666666666666666554 3444444344344433444544666666666542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHH------------------------------------------------HHHHHHHHHH
Q 003028 496 CIPNLVTYNIMIALQAKARNYQ------------------------------------------------SALKLYRDMQ 527 (856)
Q Consensus 496 ~~pd~~ty~~Li~~~~~~g~~~------------------------------------------------~A~~ll~~M~ 527 (856)
.. +...+..++.++.+.|-.. .|+.-++.+.
T Consensus 200 P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 200 PT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred CC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 11 3333344444444433322 2333333333
Q ss_pred Hc-CCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 003028 528 NA-GFEPDK-----VTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAG- 600 (856)
Q Consensus 528 ~~-gi~pd~-----~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g- 600 (856)
.. +-.|.. ....-.+-++...|++.++.+.++.+...+......+-..+.++|...+++++|..+|+.+....
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 21 222321 12234556778889999999999999988866556688899999999999999999999987532
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------------CCCCHHHH-HHHHHHHHhcCCcchHHHH
Q 003028 601 ----LRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLG-------------LKPSLQTY-TLLLSCCTEARSPYDMGFC 662 (856)
Q Consensus 601 ----~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g-------------~~Pd~~ty-~~Ll~a~~~~g~~~~a~~l 662 (856)
..++......|.-+|...+++++|..+++++.+.. ..||-..+ ..+...+...|++.+|+..
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 23345556789999999999999999999998721 12333344 3445568899999999999
Q ss_pred HHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003028 663 HELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKN 740 (856)
Q Consensus 663 ~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~ 740 (856)
++.+....+........+...+... +....+..+++.....++. +..+.-.++..+...|++++|..+.+...+..
T Consensus 439 le~l~~~aP~n~~l~~~~A~v~~~R-g~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 439 LEDLSSTAPANQNLRIALASIYLAR-DLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9999888886666555443333333 3445566666666655433 45667788889999999999999998887653
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-11 Score=128.76 Aligned_cols=342 Identities=16% Similarity=0.209 Sum_probs=178.8
Q ss_pred HHHHHHHHHhhh---ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 327 AYQANQVLKQLQ---DHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIH 403 (856)
Q Consensus 327 ~~~~~~vL~~l~---~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~ 403 (856)
..++..++..+. ..+.|.+++.+-... ..+.+..+||.+|.+-.-..+ .+++.+|....+.||..|+|+++.
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 344444444433 223455555444322 223444455555544332222 445555555555555555555555
Q ss_pred HHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH----CCC----CCCHHHHHH
Q 003028 404 SYGRANYLNE----ALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDV-AMDMYKKMQA----AGL----SPDTFTYSV 470 (856)
Q Consensus 404 ~~~~~g~~~~----A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~-A~~l~~~m~~----~g~----~pd~~ty~~ 470 (856)
+..+.|+++. |++++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. ..+ +-|...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 5555554433 33344555555555555555555555555554432 2222222221 111 123334444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 471 IINCLGKAGHLQAAHQLFCEMVNQG----CIPN---LVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVME 543 (856)
Q Consensus 471 Li~~y~k~g~~~~A~~lf~~m~~~g----~~pd---~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~ 543 (856)
.|..|....+.+-|.++..-+.... +.|+ ..-|..+....|+....+..+..|+.|.-.-.-|+..+...++.
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 4555555555555555544443210 1111 11234455555666666666666776665555667777777777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC-CH-------------HHHHHHHHHHHH-----cCCCCC
Q 003028 544 VLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAG-NV-------------RKAWEWYEAMLQ-----AGLRPN 604 (856)
Q Consensus 544 a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g-~~-------------~~A~~l~~~m~~-----~g~~pd 604 (856)
+....+.++-.-++|.+++..|.......-.-++..+++.. .. +-|..+++.... ......
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~ 521 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWP 521 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC
Confidence 77777777777777777777665444444444444444443 11 011122211110 122345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCh
Q 003028 605 VPTCNSLLSAFLRVGQLSDAYHLLQGMLNLG----LKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPA 673 (856)
Q Consensus 605 ~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g----~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~ 673 (856)
....+.++.-+.+.|+.++|.++|..+...+ ..|......-+++.-...+++..|..+++.+...+.+.
T Consensus 522 ~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 522 ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 5566777777888888888888888886533 23444445566666667777777888887776666543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.6e-09 Score=131.90 Aligned_cols=390 Identities=13% Similarity=0.020 Sum_probs=246.3
Q ss_pred hhChhHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHH
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHDEHTYTTM-VGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRA-NYLNEA 414 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd~~~y~~L-i~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~-g~~~~A 414 (856)
+.+.+.|++.++ .. .....|+..+.... ..+|.+.+++++|+.++.++.+.+. .+..-+..|-..|.+. ++ +++
T Consensus 160 y~q~eqAl~AL~-lr-~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a 235 (987)
T PRK09782 160 LAQLPVARAQLN-DA-TFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRL 235 (987)
T ss_pred hhhHHHHHHHHH-Hh-hhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHH
Confidence 345566666666 32 22333344444444 8888888888889999988888752 3555566777777773 66 777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHH-----------------------
Q 003028 415 LDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLS-PDTFTYSV----------------------- 470 (856)
Q Consensus 415 ~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~-pd~~ty~~----------------------- 470 (856)
..+++. .++-|...+..+...|.+.|+.++|.++++++...-.. |...+|--
T Consensus 236 ~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~ 311 (987)
T PRK09782 236 LALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADN 311 (987)
T ss_pred HHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHH
Confidence 777553 33467888889999999999999999999988654211 21111100
Q ss_pred -------HHHHH---------------------------------------------------------------HccCC
Q 003028 471 -------IINCL---------------------------------------------------------------GKAGH 480 (856)
Q Consensus 471 -------Li~~y---------------------------------------------------------------~k~g~ 480 (856)
++..+ .+.|+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~ 391 (987)
T PRK09782 312 RQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQ 391 (987)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccc
Confidence 01111 22344
Q ss_pred HHHHHHHHHHHHHc-C-CCC------------------------------------------------------------
Q 003028 481 LQAAHQLFCEMVNQ-G-CIP------------------------------------------------------------ 498 (856)
Q Consensus 481 ~~~A~~lf~~m~~~-g-~~p------------------------------------------------------------ 498 (856)
.++|.++|+..... + -..
T Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 471 (987)
T PRK09782 392 SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM 471 (987)
T ss_pred HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC
Confidence 44455544443321 0 000
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHH
Q 003028 499 ----NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYG 574 (856)
Q Consensus 499 ----d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~ 574 (856)
+...|..+..++.. ++.++|+..|.+.... .|+......+...+...|++++|...|+.+... .|+...+.
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~ 546 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLL 546 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHH
Confidence 11222222223322 4455566655554433 244433333344445778888888888877553 34444556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003028 575 LLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEAR 654 (856)
Q Consensus 575 ~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g 654 (856)
.+...+.+.|++++|..+|+...+.. +.+...+..+...+...|++++|+..|++.++ +.|+...|..+-.++.+.|
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCC
Confidence 66777788888888888888887653 23333333444445566999999999999987 5678888888888899999
Q ss_pred CcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHH
Q 003028 655 SPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWE 734 (856)
Q Consensus 655 ~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~ 734 (856)
+.++|...++......+........+...+...++. +++..+++......+. +..++..+..+|...|++++|+..|+
T Consensus 624 ~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~-eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 624 NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI-AQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999998887666555554443344444 4444444444333332 45678899999999999999999999
Q ss_pred HHHhCCCCCCcc
Q 003028 735 VAAQKNVYPDAV 746 (856)
Q Consensus 735 ~m~~~~~~Pd~~ 746 (856)
+..+.. |+..
T Consensus 702 ~Al~l~--P~~a 711 (987)
T PRK09782 702 LVIDDI--DNQA 711 (987)
T ss_pred HHHhcC--CCCc
Confidence 998764 5443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.4e-09 Score=121.72 Aligned_cols=469 Identities=13% Similarity=0.129 Sum_probs=305.7
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHH
Q 003028 339 DHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQ--PNVVTYNRLIHSYGRANYLNEALD 416 (856)
Q Consensus 339 ~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~--pd~~ty~~Li~~~~~~g~~~~A~~ 416 (856)
.++.++..+...-...+ .++...+.|...|.-.|++..++.+...+...... .-...|-.+.++|-..|++++|..
T Consensus 251 s~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 45567777766654444 35568899999999999999999999998864311 123457788999999999999999
Q ss_pred HHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHH
Q 003028 417 VFKQMQVVGCEPDR--VTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAG----HLQAAHQLFCE 490 (856)
Q Consensus 417 lf~~m~~~g~~pd~--~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g----~~~~A~~lf~~ 490 (856)
+|.+..+. .+|. ..+.-|...|.+.|+++.+...|+.+... .+-+..+..+|-..|...+ ..+.|..++..
T Consensus 329 yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 329 YYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 99887754 3444 45556788999999999999999999886 3456677777777787775 56777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--
Q 003028 491 MVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDM----QNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK-- 564 (856)
Q Consensus 491 m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M----~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~-- 564 (856)
..+.- +.|...|-.+...|-...-+.. +.+|... ...+-.+.....|.+.......|++++|...|+.....
T Consensus 406 ~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 406 VLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred HHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 66543 3377788777777766555544 7766544 34455577778899999999999999999999988765
Q ss_pred -CCCCCHh------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHC-C
Q 003028 565 -NWVPDEP------VYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPT-CNSLLSAFLRVGQLSDAYHLLQGMLNL-G 635 (856)
Q Consensus 565 -g~~pd~~------~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t-~n~Li~ay~~~g~~e~A~~l~~~M~~~-g 635 (856)
...+|.. +--.+...+-..++.+.|.++|..+... .|.-+. |--+...-...+...+|...+++.++. .
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~ 561 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS 561 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc
Confidence 1223331 2333455566778999999999999864 354332 333332333457788999999988873 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC---ChHH-------HHHhcCCCCCCc---ccHHHHHHHHHHHHh
Q 003028 636 LKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGH---PAHM-------FLLSMPSPGPDG---QNVRDHVGSFLEMMH 702 (856)
Q Consensus 636 ~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~---~~~~-------~~~~l~~~~~~~---~~~~~~a~~l~~~~~ 702 (856)
-.|+..+|.. ..+.....+.-+..-+..+...-. +... ++..+...-.++ ....+.|..++..+.
T Consensus 562 ~np~arsl~G--~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 562 SNPNARSLLG--NLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred CCcHHHHHHH--HHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 3455544433 234444444444442332222211 1111 111111111111 122344455555444
Q ss_pred cCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CCCcccccCceeeeeccccccchhhHHHHH-HHHHHHHHH
Q 003028 703 SEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNV-YPDAVKEKGMSYWLINLHVMSDGTAVIALS-RTLAWFRKQ 780 (856)
Q Consensus 703 ~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~-~Pd~~t~~~~~~w~~~~~~l~~g~a~~g~~-~~l~~~~~~ 780 (856)
..++ .+.+.-|-++-.++.+|++.+|..+|.+..+... .+| .|. .+..++...|.. .+++.| +.
T Consensus 640 ~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d--------v~l----Nlah~~~e~~qy~~AIqmY-e~ 705 (1018)
T KOG2002|consen 640 RNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED--------VWL----NLAHCYVEQGQYRLAIQMY-EN 705 (1018)
T ss_pred hcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc--------eee----eHHHHHHHHHHHHHHHHHH-HH
Confidence 4433 3667778889999999999999999999987654 121 354 244455555654 456666 44
Q ss_pred HHHcCCCCCceeeeeeccccCCcccchHHHHHHHHHHhhcC-CCCcccCC-CceEE
Q 003028 781 MLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLHMFS-FPFFTENG-NSGCF 834 (856)
Q Consensus 781 m~~~g~~Pd~it~i~~l~~~~~~~~~~~l~~a~~~ll~~~~-~pf~~~~~-~~gc~ 834 (856)
..+.-..-++..++..||+.- -..+.+.++.+.++..+. .|+.|... |+|.+
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~--y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAW--YEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 444444667777777777642 234569999999888875 78887743 55544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.2e-09 Score=126.12 Aligned_cols=369 Identities=13% Similarity=0.043 Sum_probs=257.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 365 TMVGILGRARQFGAINKLLDQMVRDGCQPNV--VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK 442 (856)
Q Consensus 365 ~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~--~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k 442 (856)
.-+-...+.|+++.|...|++..+. .|+. ..+ .++..+...|+.++|+.++++..... .........+...|..
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~ 114 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHH
Confidence 3344567999999999999999875 4653 344 88888999999999999999987211 1222233333557888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 443 AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKL 522 (856)
Q Consensus 443 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l 522 (856)
.|++++|+++|+++.+.. +-+...+..++..|...++.++|++.++.+... .|+...+-.++..+...++..+|++.
T Consensus 115 ~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 899999999999999874 345777888899999999999999999999876 45666665555555456677679999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH-------------------------------------------
Q 003028 523 YRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFA------------------------------------------- 559 (856)
Q Consensus 523 l~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~------------------------------------------- 559 (856)
++++.+.. +-+...+..++.++.+.|-...|.++.+
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 99998864 2234455555555655555444433332
Q ss_pred -----HHHHc-CCCCCH-hh----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003028 560 -----EMRRK-NWVPDE-PV----YGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLL 628 (856)
Q Consensus 560 -----~m~~~-g~~pd~-~~----y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~ 628 (856)
.+... +-.|.. .. ..-.+-++.+.|++.++.+.|+.|...+.+....+-..+.++|...+++++|+.+|
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 22211 111221 11 12334567788999999999999998876655557789999999999999999999
Q ss_pred HHHHHCC-----CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC------------hHHHHHh---cCCCCCCcc
Q 003028 629 QGMLNLG-----LKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHP------------AHMFLLS---MPSPGPDGQ 688 (856)
Q Consensus 629 ~~M~~~g-----~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~------------~~~~~~~---l~~~~~~~~ 688 (856)
+.+.... ..++......|.-++.+.+++++|..+++.+.+..+. ...+... ....+.- .
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~-~ 429 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA-L 429 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH-c
Confidence 9997643 2234444678889999999999999999999874331 1111100 0000001 1
Q ss_pred cHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCc
Q 003028 689 NVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDA 745 (856)
Q Consensus 689 ~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~~Pd~ 745 (856)
+....++..++.+.... +.+..+...+.+.+...|.+.+|.+.++.+... .|+.
T Consensus 430 gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~ 483 (822)
T PRK14574 430 NDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRS 483 (822)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCcc
Confidence 23566666667665443 336778889999999999999999999776655 4543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.3e-09 Score=120.33 Aligned_cols=281 Identities=10% Similarity=0.078 Sum_probs=191.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHH
Q 003028 373 ARQFGAINKLLDQMVRDGCQPNVVTYNRL-IHSYGRANYLNEALDVFKQMQVVGCEPDRVTYC--TLIDIHAKAGFLDVA 449 (856)
Q Consensus 373 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~L-i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~--~Ll~~~~k~g~~~~A 449 (856)
.|+++.|++.+....+.. +++..+-.+ .....+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 588888887777665531 223333333 34447788888888888888754 45543332 335677788888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHH
Q 003028 450 MDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNL-------VTYNIMIALQAKARNYQSALKL 522 (856)
Q Consensus 450 ~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~-------~ty~~Li~~~~~~g~~~~A~~l 522 (856)
...++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888887764 346777788888888888888888888888877544222 1333334444444455556666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003028 523 YRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLR 602 (856)
Q Consensus 523 l~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~ 602 (856)
++.+.+. .+.+......+...+...|+.++|..++++..+.. +|... .++.+....++.+++.+..+.+.+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 6655332 23456677778888888888888888888877643 34321 23334445688888888888887652 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 003028 603 PNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELM 666 (856)
Q Consensus 603 pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m 666 (856)
-|...+..+...+.+.+++++|.+.|+.+.+ ..|+..+|..+...+.+.|+.+++..+++.-
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566677888888888888888888888886 5688888888888888888887777766543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.8e-09 Score=119.75 Aligned_cols=328 Identities=15% Similarity=0.079 Sum_probs=254.9
Q ss_pred HHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003028 333 VLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLN 412 (856)
Q Consensus 333 vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~ 412 (856)
.+-..++.+.|.+++.++.++.. .....|-+|..+|-..|+.+++...+-..... .+-|...|..+-....+.|.++
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHH
Confidence 34445899999999999998654 35668999999999999999999877444332 2347789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCCHHHHHHHH
Q 003028 413 EALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTF----TYSVIINCLGKAGHLQAAHQLF 488 (856)
Q Consensus 413 ~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~----ty~~Li~~y~k~g~~~~A~~lf 488 (856)
.|.-.|.+..+.. +++...+---+..|-+.|+...|..-|.++.....+.|.. +--.+++.|...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999998875 6666677777889999999999999999998874322222 2234567788888889999998
Q ss_pred HHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------------------CCCHHHHHH
Q 003028 489 CEMVNQ-GCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGF---------------------------EPDKVTYSI 540 (856)
Q Consensus 489 ~~m~~~-g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi---------------------------~pd~~ty~~ 540 (856)
+..... +-..+...+++++..|.+...++.|......+..... .++... .-
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IR 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-Hh
Confidence 877652 2334667899999999999999999999988876221 122222 12
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003028 541 VMEVLGHCGYLDEAEAVFAEMRRKN--WVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRV 618 (856)
Q Consensus 541 ll~a~~~~g~~~~A~~l~~~m~~~g--~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~ 618 (856)
++-++.+....+..+-+.....+.. ..-+...|.-+.++|...|++.+|..+|..+.....--+...|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 3344556666666666666666665 44567889999999999999999999999999776666788999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcchHHHHHHHHH
Q 003028 619 GQLSDAYHLLQGMLNLGLKPSL-QTYTLLLSCCTEARSPYDMGFCHELMA 667 (856)
Q Consensus 619 g~~e~A~~l~~~M~~~g~~Pd~-~ty~~Ll~a~~~~g~~~~a~~l~~~m~ 667 (856)
|.+++|++.|+..+. ..|+. .....|-..+.+.|+.++|.+.++.+.
T Consensus 463 ~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999997 45654 455556666889999998887776554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-09 Score=119.37 Aligned_cols=288 Identities=12% Similarity=0.043 Sum_probs=224.5
Q ss_pred HHHHhh-hChhHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHh
Q 003028 332 QVLKQL-QDHTVALGFFNWLRRQAGFKHDEHT-YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYN--RLIHSYGR 407 (856)
Q Consensus 332 ~vL~~l-~~~~~Al~~f~~m~~~~g~~pd~~~-y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~--~Li~~~~~ 407 (856)
.++... ++++.|.+.+....+. .+++.. |-....+..+.|+++.|.+.|.++.+. .|+...+. .....+..
T Consensus 91 gl~a~~eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 91 ALLKLAEGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH
Confidence 344433 8999999888766542 122333 333355558999999999999999874 56654433 33678899
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCC
Q 003028 408 ANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDT-------FTYSVIINCLGKAGH 480 (856)
Q Consensus 408 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~-------~ty~~Li~~y~k~g~ 480 (856)
.|+++.|.+.++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+
T Consensus 166 ~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 166 RNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999998876 557888999999999999999999999999988654322 234444555555566
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003028 481 LQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAE 560 (856)
Q Consensus 481 ~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~ 560 (856)
.+...++++.+... .+.+......+...+...|+.++|.+++++..+. .||.. ..++.+....++.+++.+..+.
T Consensus 245 ~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 245 SEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHH
Confidence 77777777776543 2347788889999999999999999999998874 44542 2234444566999999999999
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 561 MRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 561 m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+.+.. +-|...+..+...+.+.+++++|.+.|+...+. .|+...|..|...+.+.|+.++|.+++++-+.
T Consensus 320 ~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 320 QIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98764 446777889999999999999999999999984 69999999999999999999999999998764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.2e-12 Score=134.42 Aligned_cols=261 Identities=15% Similarity=0.172 Sum_probs=103.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003028 365 TMVGILGRARQFGAINKLLDQMVRDG-CQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKA 443 (856)
Q Consensus 365 ~Li~~~~k~g~~~~A~~lf~~m~~~g-~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~ 443 (856)
.+...+.+.|++++|.++++...... .+.|...|..+...+...++++.|.+.++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45777778888888888886554332 12345555556666677888888888888887765 2355566667666 688
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 444 GFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQG-CIPNLVTYNIMIALQAKARNYQSALKL 522 (856)
Q Consensus 444 g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g-~~pd~~ty~~Li~~~~~~g~~~~A~~l 522 (856)
+++++|.+++++..+. .++...+..++..+...++++++.++++.+.... ...+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888776654 2566777778888888888888888888876542 345677788888888888888888888
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003028 523 YRDMQNAGFEPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGL 601 (856)
Q Consensus 523 l~~M~~~gi~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~ 601 (856)
|++..+.. |+ ......++..+...|+.+++.+++....+.. ..|...+..+..+|...|+.++|..+|++.....
T Consensus 169 ~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 88887753 43 5567778888888888888888888877653 4455677788888888888888888888887642
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 602 RPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 602 ~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+.|......+..++.+.|+.++|.++.++..+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 44777888888888888888888888776653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.2e-09 Score=118.61 Aligned_cols=286 Identities=9% Similarity=0.002 Sum_probs=115.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHH
Q 003028 373 ARQFGAINKLLDQMVRDGCQPNVVT-YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDR--VTYCTLIDIHAKAGFLDVA 449 (856)
Q Consensus 373 ~g~~~~A~~lf~~m~~~g~~pd~~t-y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~--~ty~~Ll~~~~k~g~~~~A 449 (856)
.|+++.|++.+....+. .|+... +-.....+.+.|+.+.|.+.|.+..+.. |+. ...-.....+...|+++.|
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 45555555555444432 222221 2222344444455555555555543321 222 1222234444445555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHH---HHHcCCHHHHHHHHHH
Q 003028 450 MDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYN-IMIAL---QAKARNYQSALKLYRD 525 (856)
Q Consensus 450 ~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~-~Li~~---~~~~g~~~~A~~ll~~ 525 (856)
...++.+.+.. +-+..++..+...|...|++++|.+++..+.+.+.. +...+. .-..+ +...+..+++.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 55555554442 223444445555555555555555555555544332 111111 11111 1112222222223333
Q ss_pred HHHcCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003028 526 MQNAGF---EPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPV-YGLLVDLWGKAGNVRKAWEWYEAMLQAGL 601 (856)
Q Consensus 526 M~~~gi---~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~-y~~Li~~~~k~g~~~~A~~l~~~m~~~g~ 601 (856)
+..... +.+...+..+...+...|+.++|.+++++..+......... .....-.....++.+.+.+.++...+..
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 322211 11344444444555555555555555555544321111000 0111111122344445555554444321
Q ss_pred CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 003028 602 RPNV--PTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHEL 665 (856)
Q Consensus 602 ~pd~--~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~ 665 (856)
+-|. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|..++++
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1122 333444555555555555555555322222345555555555555555555555554443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-08 Score=113.43 Aligned_cols=285 Identities=12% Similarity=0.101 Sum_probs=214.4
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHH
Q 003028 339 DHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGC--QPNVVTYNRLIHSYGRANYLNEALD 416 (856)
Q Consensus 339 ~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~--~pd~~ty~~Li~~~~~~g~~~~A~~ 416 (856)
++.+|+..|..+... ..-+......+..+|...+++++|+++|+.+.+..- .-+..+|.+.+.-+-+. -++.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 466888888886542 112335666778899999999999999999987421 12677888888654322 2222
Q ss_pred HH-HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 003028 417 VF-KQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSP-DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 417 lf-~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~p-d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
++ +.+.... +-.+.+|.++-++|.-.++.+.|++.|++.++. .| ...+|+.+-+-+....++|.|...|.....
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~- 483 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG- 483 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-
Confidence 22 2222221 456789999999999999999999999999875 34 678888888888999999999999988775
Q ss_pred CCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 003028 495 GCIPNLVTYNI---MIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEP 571 (856)
Q Consensus 495 g~~pd~~ty~~---Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~ 571 (856)
.|...||+ |--.|.+.++++.|+-.|+...+.+. -+.+....+...+-+.|+.|+|++++++....... |+.
T Consensus 484 ---~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 484 ---VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred ---CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 47777766 55778999999999999998887542 24556667777888899999999999998876533 444
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003028 572 VYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS 639 (856)
Q Consensus 572 ~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd 639 (856)
.--.....+...+++++|+..|+++++. ++-+...|-.+...|.+.|+.+.|+.-|--|.+..-++.
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 4444556677889999999999999875 345667788888999999999999999988887443333
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-08 Score=115.14 Aligned_cols=285 Identities=11% Similarity=-0.000 Sum_probs=213.1
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEH-TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNV--VTYNRLIHSYGRANYLNEA 414 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~-~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~--~ty~~Li~~~~~~g~~~~A 414 (856)
+++..|.+.+....+ ..|+.. .|-....++.+.|+.+.|.+.|.+..+. .|+. ...-.....+...|+++.|
T Consensus 98 g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 98 GDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 799999999987664 345533 3445567788899999999999998765 3443 3444457888999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HccCCHHHHHHHHHH
Q 003028 415 LDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYS-VIINCL---GKAGHLQAAHQLFCE 490 (856)
Q Consensus 415 ~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~-~Li~~y---~k~g~~~~A~~lf~~ 490 (856)
.+.++.+.+.. +-+...+..+...+.+.|++++|.+++..+.+.+.. +...+. .-..++ ...+..+.+.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999875 557778999999999999999999999999998754 444342 222222 333333333445555
Q ss_pred HHHcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHH--HHhcCChHHHHHHHHHHHH
Q 003028 491 MVNQGC---IPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVT--YSIVMEV--LGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 491 m~~~g~---~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~t--y~~ll~a--~~~~g~~~~A~~l~~~m~~ 563 (856)
+.+... +.+...+..+...+...|+.++|.+++++..+.. ||... +. ++.. ....++.+.+.+.++...+
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHH
Confidence 554321 1378889999999999999999999999998864 44321 11 2222 3345788889999988876
Q ss_pred cCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 564 KNWVPDE--PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 564 ~g~~pd~--~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 2244 566788999999999999999999544333579999999999999999999999999998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-11 Score=130.64 Aligned_cols=261 Identities=17% Similarity=0.144 Sum_probs=113.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 003028 400 RLIHSYGRANYLNEALDVFKQMQVVG-CEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKA 478 (856)
Q Consensus 400 ~Li~~~~~~g~~~~A~~lf~~m~~~g-~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~ 478 (856)
.+...+.+.|++++|++++++..... .+.|...|..+...+...++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55778889999999999996554332 2345555666677778899999999999999987543 56677777777 799
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003028 479 GHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAG-FEPDKVTYSIVMEVLGHCGYLDEAEAV 557 (856)
Q Consensus 479 g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g-i~pd~~ty~~ll~a~~~~g~~~~A~~l 557 (856)
+++++|.+++....+. .++...+..++..+...++++++.++++.+.... ...+...|..+...+.+.|+.++|+++
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999877654 3566778888999999999999999999987543 345677788888899999999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003028 558 FAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLK 637 (856)
Q Consensus 558 ~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~ 637 (856)
++...+.. +-|..+.+.++..+...|+.+++.++++...+.. +.|...|..+..+|...|+.++|+..|++..+. ..
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NP 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-ST
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-cc
Confidence 99999865 2257888999999999999999999999888653 566778999999999999999999999999873 23
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 003028 638 PSLQTYTLLLSCCTEARSPYDMGFCHELMA 667 (856)
Q Consensus 638 Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~ 667 (856)
.|..+...+.+++...|+.++|..+.....
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 367788888889999999999888765543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.8e-08 Score=118.55 Aligned_cols=317 Identities=14% Similarity=0.053 Sum_probs=183.5
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhcCC---HHH
Q 003028 339 DHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRD-G-CQPNVVTYNRLIHSYGRANY---LNE 413 (856)
Q Consensus 339 ~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~-g-~~pd~~ty~~Li~~~~~~g~---~~~ 413 (856)
...+|...+..|-++.. -+....-.+--...+.|+.++|.++|...... + -.++....+-|+..|.+.+. ..+
T Consensus 357 ~~~~~~~~~~~~y~~~~--~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 357 NKAEALRLARLLYQQEP--ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred chhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 44455555555554311 13334444445556778888888888877652 1 12244555577777777765 333
Q ss_pred HHHH----------------------HHHHHH-cCC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003028 414 ALDV----------------------FKQMQV-VGC-EP--DRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFT 467 (856)
Q Consensus 414 A~~l----------------------f~~m~~-~g~-~p--d~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t 467 (856)
+..+ ++.... .+. ++ +...|..+..++.. ++.++|...|.+.... .|+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence 3333 111111 011 22 45555656555554 6666777766666554 245443
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003028 468 YSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD-KVTYSIVMEVLG 546 (856)
Q Consensus 468 y~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd-~~ty~~ll~a~~ 546 (856)
...+...+...|++++|...|+.+... .|+...+..+...+.+.|++++|...|++..+.. |+ ...+..+...+.
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~ 587 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHH
Confidence 333444445677777777777766543 3344445555666677777777777777776543 22 222223333344
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003028 547 HCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYH 626 (856)
Q Consensus 547 ~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~ 626 (856)
..|++++|...+++..+.. |+...+..+..++.+.|++++|...|++..... +-+...++.+...+...|++++|+.
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4577777777777776543 456667777777777777777777777776642 3345566666667777777777777
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003028 627 LLQGMLNLGLKPS-LQTYTLLLSCCTEARSPYDMGFCHELMAVS 669 (856)
Q Consensus 627 l~~~M~~~g~~Pd-~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~ 669 (856)
.|++.++ ..|+ ...+..+-.++...|++++|...++...+.
T Consensus 665 ~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 665 MLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7777766 3443 345555555666777766666665555444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-08 Score=104.36 Aligned_cols=226 Identities=15% Similarity=0.188 Sum_probs=155.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHccCCH
Q 003028 408 ANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDT------FTYSVIINCLGKAGHL 481 (856)
Q Consensus 408 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~------~ty~~Li~~y~k~g~~ 481 (856)
.++.++|.++|-+|.+.. +.+..+--+|-+.|-+.|..+.|+.+++.+.++ ||. ...-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 456778888888887642 334455566777788888888888888887765 332 2334455667788888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHH
Q 003028 482 QAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDK----VTYSIVMEVLGHCGYLDEAEAV 557 (856)
Q Consensus 482 ~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~----~ty~~ll~a~~~~g~~~~A~~l 557 (856)
|.|+.+|..+.+.+.. -....-.|+..|-...+|++|++.-+++.+.+-++.. ..|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 8888888888765322 3445667788888888888888888877776554432 2344455555556778888888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003028 558 FAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLK 637 (856)
Q Consensus 558 ~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~ 637 (856)
++...+.+. -.+..--.+-+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+....
T Consensus 203 l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 888776542 2344445566777888888888888888887643334556778888888888888888888888774333
Q ss_pred CC
Q 003028 638 PS 639 (856)
Q Consensus 638 Pd 639 (856)
++
T Consensus 282 ~~ 283 (389)
T COG2956 282 AD 283 (389)
T ss_pred cc
Confidence 33
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.7e-08 Score=112.73 Aligned_cols=340 Identities=14% Similarity=0.106 Sum_probs=252.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 371 GRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAM 450 (856)
Q Consensus 371 ~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~ 450 (856)
.-.|++++|.+++.+.++.. +.+...|-+|...|-+.|+.+++...+-..-... +.|...|..+-....+.|+++.|.
T Consensus 150 farg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 34499999999999999863 4578899999999999999999999876655443 567789999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHH
Q 003028 451 DMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNI----MIALQAKARNYQSALKLYRDM 526 (856)
Q Consensus 451 ~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~----Li~~~~~~g~~~~A~~ll~~M 526 (856)
-.|.+.++.. +++...+---+..|-+.|+...|..-|.+|.....+.|..-+.. ++..+...++-+.|++.+...
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999873 45666666677889999999999999999988644333333333 456677778888899988877
Q ss_pred HHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------------------------CCCCHhhHHHHHH
Q 003028 527 QNA-GFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN---------------------------WVPDEPVYGLLVD 578 (856)
Q Consensus 527 ~~~-gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g---------------------------~~pd~~~y~~Li~ 578 (856)
... +-..+..+++.++..|.+...++.|......+.... ..++..++ -++-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhh
Confidence 652 223445577888899999999999988887776611 12233331 2233
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 003028 579 LWGKAGNVRKAWEWYEAMLQAGL--RPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSP 656 (856)
Q Consensus 579 ~~~k~g~~~~A~~l~~~m~~~g~--~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~ 656 (856)
++......+....+...+.+..+ .-+...|.-+..+|...|++++|+.+|..+......-+...|.-+-.++...+..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 44455555666666666666553 3356789999999999999999999999999865555677888888888888888
Q ss_pred chHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 003028 657 YDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVA 736 (856)
Q Consensus 657 ~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m 736 (856)
+.|.+.+++.....+ ...|.. -.|-..|-+.|+.++|.+.++.|
T Consensus 466 e~A~e~y~kvl~~~p----------------------------------~~~D~R--i~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAP----------------------------------DNLDAR--ITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHHHHhcCC----------------------------------Cchhhh--hhHHHHHHhcCCHHHHHHHHhcc
Confidence 777777666654432 222333 37778899999999999999988
Q ss_pred HhCCCCCCcccccCceee
Q 003028 737 AQKNVYPDAVKEKGMSYW 754 (856)
Q Consensus 737 ~~~~~~Pd~~t~~~~~~w 754 (856)
. .||.-+-....+|
T Consensus 510 ~----~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 510 I----NPDGRNAEACAWE 523 (895)
T ss_pred c----CCCccchhhcccc
Confidence 6 4554444443333
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.6e-08 Score=101.50 Aligned_cols=283 Identities=15% Similarity=0.175 Sum_probs=143.2
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHhcCCHH
Q 003028 339 DHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVV------TYNRLIHSYGRANYLN 412 (856)
Q Consensus 339 ~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~------ty~~Li~~~~~~g~~~ 412 (856)
+.++|.+.|-+|.+ +-+-+..+.-+|-+.|.+.|..+.|+++...+.++ ||.. ..-.|..-|...|-++
T Consensus 50 Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 50 QPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred CcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 55667777777764 11223344556667777777777777777777653 4321 2233445566666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHH
Q 003028 413 EALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDT----FTYSVIINCLGKAGHLQAAHQLF 488 (856)
Q Consensus 413 ~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~----~ty~~Li~~y~k~g~~~~A~~lf 488 (856)
.|.++|..+.+.+ ..-......|+..|-+..+|++|+++-+++...+-.+.. ..|.-|...+....+++.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 7776666665543 333445556666666666666666666666655332211 12233333333445555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003028 489 CEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVP 568 (856)
Q Consensus 489 ~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~p 568 (856)
.+..+...+ .+..--.+-+.+...|++..|.+.|+...+.+..--..+...|..+|.+.|+.++....+..+.+...
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~-- 280 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT-- 280 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 555543211 22222233345555566666666665555544333333445555555555666665555555554322
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHH
Q 003028 569 DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR---VGQLSDAYHLLQGML 632 (856)
Q Consensus 569 d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~---~g~~e~A~~l~~~M~ 632 (856)
....-..+-+......-.+.|..++.+-... +|+...+..+|..-.. .|...+.+.+++.|+
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 2222233333333333334444443333332 3555555555554432 223344444444444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-07 Score=111.34 Aligned_cols=397 Identities=11% Similarity=0.056 Sum_probs=224.3
Q ss_pred hChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKH-DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVV--TYNRLIHSYGRANYLNEA 414 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~p-d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~--ty~~Li~~~~~~g~~~~A 414 (856)
+++..+..+...+....-..+ -...|--+..+|-..|+++.|...|-+... ..++.. .+--|...|.+.|+++.+
T Consensus 284 ~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s 361 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEES 361 (1018)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHH
Confidence 566666666666654321111 123566777888888888888888755544 344443 334466777888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-
Q 003028 415 LDVFKQMQVVGCEPDRVTYCTLIDIHAKAG----FLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFC- 489 (856)
Q Consensus 415 ~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g----~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~- 489 (856)
...|++..+.. +-+..|..+|-..|+..+ ..+.|..++.+..+.- +.|...|-.+...|-...-+.. +..|.
T Consensus 362 ~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~ 438 (1018)
T KOG2002|consen 362 KFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGN 438 (1018)
T ss_pred HHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHH
Confidence 88888776642 445566666666666554 4566666666666552 4466666666666554433322 43333
Q ss_pred ---HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHhcCChHHHHHH
Q 003028 490 ---EMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNA---GFEPDK------VTYSIVMEVLGHCGYLDEAEAV 557 (856)
Q Consensus 490 ---~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~---gi~pd~------~ty~~ll~a~~~~g~~~~A~~l 557 (856)
.|...+-.+.....|.+...+...|++++|...|+..... ...+|. .+--.+...+-..++.+.|.+.
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence 3344454566777777777777777777777777765433 112222 1222233344444566666666
Q ss_pred HHHHHHcCC---------------------------------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC
Q 003028 558 FAEMRRKNW---------------------------------VPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA-GLRP 603 (856)
Q Consensus 558 ~~~m~~~g~---------------------------------~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~-g~~p 603 (856)
|..+.+... ..++..+..+-..|.+...+..|.+-|+..... ...+
T Consensus 519 Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~ 598 (1018)
T KOG2002|consen 519 YKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKT 598 (1018)
T ss_pred HHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCC
Confidence 666555321 112233333333444444444444433333321 1123
Q ss_pred CHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 003028 604 NVPTCNSLLSAFL------------RVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 604 d~~t~n~Li~ay~------------~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~ 671 (856)
|+.+.-+|...|. ..+..++|+++|.+.++.. .-|...-+.+--.++..|.+.+|..++....+...
T Consensus 599 D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 599 DAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred chhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 4444334444332 2334567777777776632 22334445555556777777778777777777665
Q ss_pred ChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003028 672 PAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKN 740 (856)
Q Consensus 672 ~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~ 740 (856)
.....+..+...+...+++..++..+..-+.......++.+...|..++.++|.+.+|.+.........
T Consensus 678 ~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 678 DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 333333332222333345555555555556666666677788888888888888888888877766553
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.7e-07 Score=97.75 Aligned_cols=283 Identities=13% Similarity=0.115 Sum_probs=133.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 373 ARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDM 452 (856)
Q Consensus 373 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l 452 (856)
.|++..|+++..+-.+.+- -....|..-..+.-+.|+.+.+-.++.+.-+.--.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 3555555555555444331 122333344444455555555555555554432233444444445555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 453 YKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNL-------VTYNIMIALQAKARNYQSALKLYRD 525 (856)
Q Consensus 453 ~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~-------~ty~~Li~~~~~~g~~~~A~~ll~~ 525 (856)
++++.+.+ +-++........+|.+.|++.....++..|.+.|.--|. .+|+.++.-....+..+.-...|++
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 55555443 224445555555555555555555555555555443322 2444455444444444443334443
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003028 526 MQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNV 605 (856)
Q Consensus 526 M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~ 605 (856)
.... .+-+...-..++.-+..+|+.++|.++..+..+++..+.. ...-.+.+-++.+.-.+..+..... .+-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 3221 1222333344444555555555555555555555444331 1111233444444444444443322 12233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 003028 606 PTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHEL 665 (856)
Q Consensus 606 ~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~ 665 (856)
-.+.+|..-|.+.+.+.+|...|+..++ ..|+..+|..+-.++.+.|+++++.++.++
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 4455555555555555555555554443 345555555555555555555555554443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-07 Score=99.40 Aligned_cols=290 Identities=13% Similarity=0.060 Sum_probs=233.9
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDV 417 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l 417 (856)
|++.+|.+....-.+ .+-.| ...|-.-..+.-..|+.+.+..++.+.-+.--.++...+-+........|+++.|..-
T Consensus 98 G~~~qAEkl~~rnae-~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 98 GDFQQAEKLLRRNAE-HGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred CcHHHHHHHHHHhhh-cCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 799999998877543 33332 3456667788889999999999999998753345667777788889999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHH
Q 003028 418 FKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDT-------FTYSVIINCLGKAGHLQAAHQLFCE 490 (856)
Q Consensus 418 f~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~-------~ty~~Li~~y~k~g~~~~A~~lf~~ 490 (856)
.+++.+.+ +..+........+|.+.|++..+..++..|.+.|.--|. .+|+.+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99998876 667888999999999999999999999999999886554 4677777777777777776777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003028 491 MVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDE 570 (856)
Q Consensus 491 m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 570 (856)
.... .+-+...-..++.-+.+.|+.++|.++..+..+.+..|+.. .+-.+.+.++.+.-.+..+...+.. .-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 6543 23356667778899999999999999999999888777622 2234567788888888887777643 3355
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003028 571 PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKP 638 (856)
Q Consensus 571 ~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~P 638 (856)
..+.+|-..|.+.+.+.+|...|+...+ ..|+..+|+.+..+|.+.|+..+|.+++++.+..-..|
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999998776 47999999999999999999999999999877533333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.12 E-value=9e-07 Score=95.94 Aligned_cols=389 Identities=14% Similarity=0.115 Sum_probs=226.1
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPN-VVTYNRLIHSYGRANYLNEALD 416 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd-~~ty~~Li~~~~~~g~~~~A~~ 416 (856)
++...|..+|+.... +-..+...|--.+.+=.++..+..|..+++..... -|- ...|--.+.+=-..|++..|.+
T Consensus 87 ~e~~RARSv~ERALd--vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 87 KEIQRARSVFERALD--VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHh--cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 344455566655543 11223334555555555555555555555555542 122 2233334433344455555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-C
Q 003028 417 VFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ-G 495 (856)
Q Consensus 417 lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~-g 495 (856)
+|++-.+. .|+...|++.|+.=.+-..++.|..+|+..+- +.|++.+|--....=-++|.+..|..+|+...+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 55554432 45555555555555555555555555555543 2355555555444444555555555555443321 0
Q ss_pred -----------------------------------CCCC--HHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHcC
Q 003028 496 -----------------------------------CIPN--LVTYNIMIALQAKARNYQSALKL--------YRDMQNAG 530 (856)
Q Consensus 496 -----------------------------------~~pd--~~ty~~Li~~~~~~g~~~~A~~l--------l~~M~~~g 530 (856)
++.+ ...|..+...=-+-|+.....+. |+.+...
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~- 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK- 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-
Confidence 1111 12222222222222332222111 1122221
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------hhHHHH---HHHHHhcCCHHHHHHHHHHHHHcC
Q 003028 531 FEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDE-------PVYGLL---VDLWGKAGNVRKAWEWYEAMLQAG 600 (856)
Q Consensus 531 i~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~-------~~y~~L---i~~~~k~g~~~~A~~l~~~m~~~g 600 (856)
-+-|-.+|-..+..-...|+.+...++|+.... +++|-. .+|--+ +-.-....|++.+.++|+...+.
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l- 395 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL- 395 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-
Confidence 123444666667777778999999999999887 444421 112111 11123568899999999998873
Q ss_pred CCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHH
Q 003028 601 LRPNVPTCNSL----LSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMF 676 (856)
Q Consensus 601 ~~pd~~t~n~L----i~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~ 676 (856)
++-...||..+ ..--.++.++..|.+++...+ |..|-..+|...|..=.+.+.++....++++..+.++..-..
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~ 473 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA 473 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence 44445555544 344457889999999998887 789999999999999889999999999999999988854433
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003028 677 LLSMPSPGPDGQNVRDHVGSFLEMMHSE-DRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKN 740 (856)
Q Consensus 677 ~~~l~~~~~~~~~~~~~a~~l~~~~~~~-~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~ 740 (856)
+...... ...-+..+.+..+++...+. ..+....+|.++|+.=..+|.++.|..++++++++.
T Consensus 474 W~kyaEl-E~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 474 WSKYAEL-ETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHH-HHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 3221100 00012456777777755443 455567789999999999999999999999998874
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.4e-07 Score=96.22 Aligned_cols=321 Identities=12% Similarity=0.059 Sum_probs=225.9
Q ss_pred HHHHHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHH
Q 003028 329 QANQVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTY--NRLIHSYG 406 (856)
Q Consensus 329 ~~~~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty--~~Li~~~~ 406 (856)
..-.+++..+....|...|.......+ . .|.+-+....-.-+.+.+..+...+. .|.... --+..+|-
T Consensus 169 L~Gvv~k~~~~~s~A~~sfv~~v~~~P--~---~W~AWleL~~lit~~e~~~~l~~~l~-----~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 169 LYGVVLKELGLLSLAIDSFVEVVNRYP--W---FWSAWLELSELITDIEILSILVVGLP-----SDMHWMKKFFLKKAYQ 238 (559)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHhcCC--c---chHHHHHHHHhhchHHHHHHHHhcCc-----ccchHHHHHHHHHHHH
Confidence 345666777777888888877764322 1 34444444433444444443332222 111111 12345666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHH-H
Q 003028 407 RANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGL--SPDTFTYSVIINCLGKAGHLQ-A 483 (856)
Q Consensus 407 ~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~--~pd~~ty~~Li~~y~k~g~~~-~ 483 (856)
...+.++++.-.+.....|++-+...-+-...+.-...++++|+.+|+++.+... --|..+|..++-.--....+. -
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 6668888888888888888766655555555556677889999999999988732 126677776664433322221 1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003028 484 AHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 484 A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~ 563 (856)
|..++. +- +--..|..++...|.-.++.+.|...|++..+.+.. ....|+.+-.-|....+...|.+-+....+
T Consensus 319 A~~v~~-id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 319 AQNVSN-ID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHH-hc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 222221 11 124556777888888999999999999999876422 355778788889999999999999999988
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003028 564 KNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTY 643 (856)
Q Consensus 564 ~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty 643 (856)
.+ +.|-..|-.|.++|.-.+...-|+-+|++..... +-|...|.+|..+|.+.++.++|++.|......| ..+...|
T Consensus 393 i~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l 469 (559)
T KOG1155|consen 393 IN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSAL 469 (559)
T ss_pred cC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHH
Confidence 65 4588899999999999999999999999988742 4578999999999999999999999999999865 3366888
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHH
Q 003028 644 TLLLSCCTEARSPYDMGFCHELMAV 668 (856)
Q Consensus 644 ~~Ll~a~~~~g~~~~a~~l~~~m~~ 668 (856)
..|.+.+.+.++.++|.+.+++-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999888776554
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2e-05 Score=88.69 Aligned_cols=395 Identities=13% Similarity=0.088 Sum_probs=206.1
Q ss_pred HHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHh
Q 003028 332 QVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQM----VRDGCQPNVVTYNRLIHSYGR 407 (856)
Q Consensus 332 ~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m----~~~g~~pd~~ty~~Li~~~~~ 407 (856)
..|.++.-+..|..++....+ .++.+...|.+-...=-.+|+.+...+++++- ...|+..+...|-.=...|-+
T Consensus 414 lAlarLetYenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 334455667778888888765 45566778877777777888888888877653 445666666666555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-----------------
Q 003028 408 ANYLNEALDVFKQMQVVGCEPD--RVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTY----------------- 468 (856)
Q Consensus 408 ~g~~~~A~~lf~~m~~~g~~pd--~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty----------------- 468 (856)
.|.+-.+..+.......|+.-. ..||+.-...|.+.+.++-|..+|...++- ++-+...|
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHH
Confidence 5555555555555544443321 234555555555555555555555554443 22233334
Q ss_pred -----------------HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003028 469 -----------------SVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGF 531 (856)
Q Consensus 469 -----------------~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi 531 (856)
-.....+-..|++..|..++....+.... +...|-+-+.....+.++++|..+|.+....
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~-- 647 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI-- 647 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--
Confidence 33444444455555555555555444222 4445555555555555555555555554432
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003028 532 EPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSL 611 (856)
Q Consensus 532 ~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~L 611 (856)
.|+...|.--+...--.+..++|.+++++..+. ++.-...|..+-+.+-+.++++.|.+.|..=.+. ++-.+..|-.|
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllL 725 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLL 725 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHH
Confidence 334334433333333345555555555555542 1222334455555555555555555555433322 33334445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHH
Q 003028 612 LSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVR 691 (856)
Q Consensus 612 i~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~ 691 (856)
...=-+.|++-+|..+|++..-.+ .-+...|...+..=.+.|..+.|..++....+..+.....+.........++.
T Consensus 726 akleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r-- 802 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR-- 802 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc--
Confidence 554455555556666665555432 22334555555555566666555555544444433322222111111111111
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 003028 692 DHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNV 741 (856)
Q Consensus 692 ~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~ 741 (856)
-....+.+..-.. |..+.-++..++....+++.|.+.|++....+.
T Consensus 803 --kTks~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 803 --KTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred --chHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 1122233333322 344555777888888889999999999887653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.2e-08 Score=98.58 Aligned_cols=197 Identities=13% Similarity=0.121 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 361 HTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIH 440 (856)
Q Consensus 361 ~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~ 440 (856)
..+..+...+...|++++|.+.|++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 345555566666666666666666655432 2234455555556666666666666666555443 23344455555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003028 441 AKAGFLDVAMDMYKKMQAAGL-SPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSA 519 (856)
Q Consensus 441 ~k~g~~~~A~~l~~~m~~~g~-~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A 519 (856)
...|++++|.+.+++...... ......+..+...|...|++++|.+.|++..+... .+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHH
Confidence 555556666555555554311 11223334444445555555555555554443311 1233444444444445555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003028 520 LKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEM 561 (856)
Q Consensus 520 ~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m 561 (856)
...+++.... ...+...+..+...+...|+.++|..+.+.+
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5554444433 1222333333334444444444444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-08 Score=113.69 Aligned_cols=268 Identities=15% Similarity=0.140 Sum_probs=184.8
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003028 353 QAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVT 432 (856)
Q Consensus 353 ~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t 432 (856)
..|+.|+.+||..+|.-|+..|+++.|- +|.-|.-+..+.+...|+.++.+..+.++.+.+. .|...|
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 5688899999999999999999999888 8888887777778888999999888888877765 678889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 003028 433 YCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVN-QGCIPNLVTYNIMIALQA 511 (856)
Q Consensus 433 y~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~-~g~~pd~~ty~~Li~~~~ 511 (856)
|..|+.+|...||+.. |+...+ -.-.++..+...|--.....++..+.- .+..||..+ .+....
T Consensus 86 yt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv 150 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLV 150 (1088)
T ss_pred HHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHH
Confidence 9999999999998776 222222 112233344455544444445444332 123344433 344445
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 003028 512 KARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWE 591 (856)
Q Consensus 512 ~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~ 591 (856)
-.|.|+.+++++..|......- ++..+++-+.. ...-.+++....+...-.|+..+|.++++.-...|+++.|..
T Consensus 151 ~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHhhCCcccccc---hHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHH
Confidence 5667777777776654321110 11112443332 233444555544442225888888998888888899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003028 592 WYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARS 655 (856)
Q Consensus 592 l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~ 655 (856)
++.+|.+.|++.+..-|..|+.+ .+...-+..+++-|.+.|+.|+..|+...+-.|.+.|.
T Consensus 226 ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999988888888877777777 77788888888888888999999888888777776443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-07 Score=98.20 Aligned_cols=163 Identities=13% Similarity=0.112 Sum_probs=71.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 003028 467 TYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEP-DKVTYSIVMEVL 545 (856)
Q Consensus 467 ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~p-d~~ty~~ll~a~ 545 (856)
.+..+...|...|++++|.+.|++..+... .+...+..+...+...|++++|.+.|++.......+ ....+..+...+
T Consensus 67 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 67 AYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 333333444444444444444443333211 122333334444444444444444444443321111 122333344444
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 546 GHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAY 625 (856)
Q Consensus 546 ~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~ 625 (856)
...|++++|...+.+..+.. ..+...+..+...+...|++++|..++++..+. .+.+...+..++..+...|+.++|.
T Consensus 146 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 44555555555555544432 112334445555555555555555555555443 2334444445555555555555555
Q ss_pred HHHHHHH
Q 003028 626 HLLQGML 632 (856)
Q Consensus 626 ~l~~~M~ 632 (856)
.+++.+.
T Consensus 224 ~~~~~~~ 230 (234)
T TIGR02521 224 RYGAQLQ 230 (234)
T ss_pred HHHHHHH
Confidence 5555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.3e-10 Score=87.27 Aligned_cols=50 Identities=32% Similarity=0.624 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003028 603 PNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTE 652 (856)
Q Consensus 603 pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~ 652 (856)
||+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888763
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.6e-07 Score=96.99 Aligned_cols=289 Identities=13% Similarity=0.133 Sum_probs=174.2
Q ss_pred HHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCH
Q 003028 334 LKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQ--PNVVTYNRLIHSYGRANYL 411 (856)
Q Consensus 334 L~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~--pd~~ty~~Li~~~~~~g~~ 411 (856)
.+.++..+.++.-.+... ..|+.-+...-+....+.-...+++.|+.+|+++.++..- -|..+|..++..--....+
T Consensus 237 ~~el~q~~e~~~k~e~l~-~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLS-SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHH-hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 334444555555444443 3455555444444445555667777777777777765211 1566666665432221111
Q ss_pred H-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003028 412 N-EALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCE 490 (856)
Q Consensus 412 ~-~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~ 490 (856)
. .|..++ .+. +--+.|+..+.+-|.-.++.++|...|+..++.+ +-....|+.+-+-|........|..-+..
T Consensus 316 s~LA~~v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 316 SYLAQNVS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 1 111111 111 2234566666677777777777777777777653 23456677777777777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003028 491 MVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDE 570 (856)
Q Consensus 491 m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 570 (856)
.++-. +.|-..|-.|-.+|.-.+.+.=|+-.|++..... +-|...|.+|-++|.+.+++++|.+.|......+ ..+.
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~ 466 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEG 466 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccch
Confidence 77653 2366777777777777777777777777776642 2346677777777777777777777777777655 2245
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 571 PVYGLLVDLWGKAGNVRKAWEWYEAMLQA----GL-RP-NVPTCNSLLSAFLRVGQLSDAYHLLQGML 632 (856)
Q Consensus 571 ~~y~~Li~~~~k~g~~~~A~~l~~~m~~~----g~-~p-d~~t~n~Li~ay~~~g~~e~A~~l~~~M~ 632 (856)
..+..|.+.|-+.++.++|...|+.-.+. |. .+ .....--|..-+.+.+++++|........
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 66777777777777777777777665542 21 22 12222335555667777777766554444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.9e-10 Score=86.96 Aligned_cols=49 Identities=47% Similarity=0.728 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 393 PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 393 pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+.||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444555555555555555555555555555555555555555554443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.1e-08 Score=108.94 Aligned_cols=280 Identities=14% Similarity=0.116 Sum_probs=214.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003028 375 QFGAINKLLDQMVRDGCQPNV-VTYNRLIHSYGRANYLNEALDVFKQMQVVG--CEPDRVTYCTLIDIHAKAGFLDVAMD 451 (856)
Q Consensus 375 ~~~~A~~lf~~m~~~g~~pd~-~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g--~~pd~~ty~~Ll~~~~k~g~~~~A~~ 451 (856)
+..+|..+|..++.. .+|. .....+..+|...+++++|.++|+.+.+.. ..-+...|.+.|.-+-+. -++.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 357889999887664 3444 444567799999999999999999998752 234677888887655332 2222
Q ss_pred HH-HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003028 452 MY-KKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNA 529 (856)
Q Consensus 452 l~-~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 529 (856)
++ ++++.. -+-.+.+|.++-++|.-.++.+.|.+.|++..+. .| ...+|+.+-.-+.....+|.|+..|+....
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~- 483 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG- 483 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-
Confidence 22 333333 3446899999999999999999999999999875 34 677888888889999999999999998764
Q ss_pred CCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003028 530 GFEPDKVTY---SIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVP 606 (856)
Q Consensus 530 gi~pd~~ty---~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ 606 (856)
.|...| .-+.-.|.+.++++.|+-.|+...+.+. -+.+....+...+-+.|+.|+|+++|++..... +.|+-
T Consensus 484 ---~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l 558 (638)
T KOG1126|consen 484 ---VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPL 558 (638)
T ss_pred ---CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCch
Confidence 344444 4566678999999999999999987653 366777788888999999999999999998653 44666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 003028 607 TCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQ-TYTLLLSCCTEARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 607 t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~-ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~ 671 (856)
.--..+..+...+++++|+..|+++++ +.|+.. .|..+-..|.+.|..+.|..-+-.+....+
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 666677888899999999999999998 678875 455555679999988777665555544433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.8e-07 Score=109.18 Aligned_cols=149 Identities=9% Similarity=-0.078 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 446 LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRD 525 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 525 (856)
+++|...+++..+.. +-+..++..+...+...|++++|...|++..+... .+...|..+...|...|++++|+..+++
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344444444444432 12334444444444444444444444444444321 1233344444444444444444444444
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 526 MQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 526 M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
..+..... ...+..++..+...|++++|...++++.+....-+...+..+..+|...|++++|...++++.
T Consensus 398 Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 398 CLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 44432111 111112222233344445555554444432211122233444444445555555555554443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-07 Score=99.78 Aligned_cols=289 Identities=13% Similarity=0.137 Sum_probs=205.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003028 368 GILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLI-HSYGR-ANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF 445 (856)
Q Consensus 368 ~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li-~~~~~-~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~ 445 (856)
.-|.+.|+++.|.+++.-+.+..-..-...-|.|- -.|.+ ..++..|..+-+...... .-+......--+.....|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 44678899999999888776542221111222222 22233 346777777766654322 2222222222233345689
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 446 LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRD 525 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 525 (856)
+++|.+.|.+.+...-.-....||+= -.+-+.|++++|+..|-.+..- +.-+....-.+...|-...+..+|++++.+
T Consensus 506 ~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 99999999999876443333444433 3467789999999999877532 122667777788899999999999999977
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003028 526 MQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNV 605 (856)
Q Consensus 526 M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~ 605 (856)
.... ++-|....+-|...|-+.|+-.+|.+.+-+--+ -++-+..+...|...|....-+++|..+|++..- +.|+.
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~ 659 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQ 659 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccH
Confidence 6543 455677888999999999999999998766554 3456788999999999999999999999998765 68999
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 003028 606 PTCNSLLSAF-LRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHEL 665 (856)
Q Consensus 606 ~t~n~Li~ay-~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~ 665 (856)
.-|-.||..| .+.|++.+|+++++.... .+.-|...+..|+..|...|. .++.+.-++
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl-~d~key~~k 718 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL-KDAKEYADK 718 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc-hhHHHHHHH
Confidence 9999988655 578999999999999876 466778888888899988886 344444333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-05 Score=88.81 Aligned_cols=363 Identities=11% Similarity=0.053 Sum_probs=257.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHH
Q 003028 367 VGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQ----MQVVGCEPDRVTYCTLIDIHAK 442 (856)
Q Consensus 367 i~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~----m~~~g~~pd~~ty~~Ll~~~~k 442 (856)
.-+|.+..-++.|..+++...+. ++-+...|.+-...=-.+|+.+...+++++ +...|+..+...|..=...|-.
T Consensus 413 wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 33455556677788888877764 566777777666666677777777777654 3456777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 443 AGFLDVAMDMYKKMQAAGLSP--DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSAL 520 (856)
Q Consensus 443 ~g~~~~A~~l~~~m~~~g~~p--d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 520 (856)
.|..--+..+....+..|+.- -..||+.-...|.+.+.++-|..+|....+. ++.+...|...+..--..|..++..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHH
Confidence 777777777777777766542 2457777778888888888888888887764 2336667777776666788888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003028 521 KLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAG 600 (856)
Q Consensus 521 ~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g 600 (856)
.+|++.... ++-....|.....-+-..|+...|..++....+.... +...+-+-+........++.|..+|.+...
T Consensus 571 Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~-- 646 (913)
T KOG0495|consen 571 ALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS-- 646 (913)
T ss_pred HHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--
Confidence 888888765 2333445655666677789999999999998886533 778888888888899999999999988876
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHh
Q 003028 601 LRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQT-YTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLS 679 (856)
Q Consensus 601 ~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~t-y~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~ 679 (856)
..|+...|..-+..-.-.++.++|++++++.++ ..|+..- |..+-+.+.+.++.+.+...+..-.+..+...-.+..
T Consensus 647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 647 ISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 458888888888888888999999999988887 4677644 4444445777787777777665555544433222222
Q ss_pred cCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 003028 680 MPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQK 739 (856)
Q Consensus 680 l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~ 739 (856)
+... ....+..-.+..+++.-...++. +..+|-..|.+=.+.|..+.|..+.-+.++.
T Consensus 725 Lakl-eEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 725 LAKL-EEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHH-HHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2111 11111234455566655544443 5678889999999999999999888887765
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=5e-07 Score=106.98 Aligned_cols=266 Identities=15% Similarity=0.073 Sum_probs=180.7
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHH
Q 003028 358 HDEHTYTTMVGILGR-----ARQFGAINKLLDQMVRDGCQPN-VVTYNRLIHSYGRA---------NYLNEALDVFKQMQ 422 (856)
Q Consensus 358 pd~~~y~~Li~~~~k-----~g~~~~A~~lf~~m~~~g~~pd-~~ty~~Li~~~~~~---------g~~~~A~~lf~~m~ 422 (856)
.+...|...+.+... .+.+++|..+|++..+. .|+ ...|..+..+|... +++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 345566666666432 23467899999988874 454 45666665555422 34789999999988
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 003028 423 VVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVT 502 (856)
Q Consensus 423 ~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~t 502 (856)
+.. +-+...+..+..++...|++++|...|++..+.. +.+...+..+...|...|++++|...|++..+.... +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 765 4567788888888889999999999999998874 335677888888899999999999999998876432 2233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 003028 503 YNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGK 582 (856)
Q Consensus 503 y~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k 582 (856)
+..++..+...|++++|+..++++.....+-+...+..+..++...|+.++|...+..+.... ..+....+.+...|+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 344455567788999999999888765322234456667777888999999999998876542 2234445566666777
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003028 583 AGNVRKAWEWYEAMLQA-GLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNL 634 (856)
Q Consensus 583 ~g~~~~A~~l~~~m~~~-g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~ 634 (856)
.| +.|...++.+.+. ...+....+ +-..|.-.|+.+.+..+ +++.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 77 4777777776642 112222223 33344455666665555 666654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4e-06 Score=91.57 Aligned_cols=224 Identities=10% Similarity=0.029 Sum_probs=168.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 003028 510 QAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKA 589 (856)
Q Consensus 510 ~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A 589 (856)
+.-.|+.-.|.+-|+...+....++. .|.-+..+|....+.++....|......+. -+..+|..-.+++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHH
Confidence 34467888899999988887554443 377778889999999999999999887653 3677888888888889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003028 590 WEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVS 669 (856)
Q Consensus 590 ~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~ 669 (856)
..=|++..... +-++..|-.+..+.-+.+++++++..|++.++. +.--...|+.....+...++++.|.+.++...+.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999988742 335667777777778899999999999999874 4444578888889999999999999999988777
Q ss_pred CCChHHHHHhc------CCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 003028 670 GHPAHMFLLSM------PSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQ 738 (856)
Q Consensus 670 g~~~~~~~~~l------~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~ 738 (856)
-+..|..+... ......-.+....+..+++...+.++..+ ..|..|..+-...|++++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce-~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCE-QAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 65532221110 00011112345566666666666665543 4688999999999999999999998653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-07 Score=102.03 Aligned_cols=187 Identities=12% Similarity=0.063 Sum_probs=127.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003028 547 HCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYH 626 (856)
Q Consensus 547 ~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~ 626 (856)
..|++++|.+.+++.....-.-....||.=+ .+-+.|++++|++.|-++..- +.-+....-.+...|-...+...|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 4588999999999988754433344444433 356789999999999887643 24577788888999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCC
Q 003028 627 LLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDR 706 (856)
Q Consensus 627 l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~ 706 (856)
++.+... -+.-|...+.-|-..|-+.|+-..|.+++-.--+.-+..-..+ ..+..|.-..++.+.+..+++.... +
T Consensus 580 ~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~i-ewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 580 LLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETI-EWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHH-HHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 9976654 2444567778888889899987777766544333322211111 1111222233566777777765543 3
Q ss_pred CchHHHHHHHHH-HHHhCCChhHHHHHHHHHHhC
Q 003028 707 ESKRGLVDAVVD-FLHKSGLKEEAGSVWEVAAQK 739 (856)
Q Consensus 707 ~~~~~~~~aLi~-~y~k~G~~eeA~~lf~~m~~~ 739 (856)
.|+..-|..+|. ++.+.|++++|.++++....+
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 466666777765 455689999999999998876
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-06 Score=100.43 Aligned_cols=291 Identities=16% Similarity=0.183 Sum_probs=208.6
Q ss_pred HHHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhc-
Q 003028 331 NQVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYN-RLIHSYGRA- 408 (856)
Q Consensus 331 ~~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~-~Li~~~~~~- 408 (856)
+.++...++++.|++.++.-.. .+......+......+.+.|+.++|..+|..+.+++ |+...|- .|..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 4777888999999999987543 233345567778899999999999999999999875 5555554 444544222
Q ss_pred ----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003028 409 ----NYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF-LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQA 483 (856)
Q Consensus 409 ----g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~-~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~ 483 (856)
...+...++|+++...- |.......+.-.+..... -..+...+..+...|++ .+|+.|-..|......+-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 35788889999887653 333332222222222112 33455667777788875 567777777877777777
Q ss_pred HHHHHHHHHHc----C----------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003028 484 AHQLFCEMVNQ----G----------CIPNLV--TYNIMIALQAKARNYQSALKLYRDMQNAGFEPD-KVTYSIVMEVLG 546 (856)
Q Consensus 484 A~~lf~~m~~~----g----------~~pd~~--ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd-~~ty~~ll~a~~ 546 (856)
..+++..+... + -.|... ++..+...|-..|++++|++++++..+. .|+ +..|..-...+-
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 77777776533 1 123443 4456678888999999999999998875 466 557888888899
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HH--HHHHHHHHHc
Q 003028 547 HCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVP------TC--NSLLSAFLRV 618 (856)
Q Consensus 547 ~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~------t~--n~Li~ay~~~ 618 (856)
+.|++.+|.+.++..+..... |..+-+-.+..+.++|++++|.+++......+..|-.. .| .....+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999986643 77777788888999999999999999887655433221 22 4457888999
Q ss_pred CCHHHHHHHHHHHHH
Q 003028 619 GQLSDAYHLLQGMLN 633 (856)
Q Consensus 619 g~~e~A~~l~~~M~~ 633 (856)
|++..|++.|..+.+
T Consensus 319 ~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 319 GDYGLALKRFHAVLK 333 (517)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999888776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-06 Score=90.52 Aligned_cols=229 Identities=14% Similarity=0.054 Sum_probs=131.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 003028 399 NRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKA 478 (856)
Q Consensus 399 ~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~ 478 (856)
+.+-++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-.+|.+..+.+.|+.+|.+-.+. ++-|+....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 44556666666666666666655543 455556666666666666666666666665554 333333334455556666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003028 479 GHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVF 558 (856)
Q Consensus 479 g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~ 558 (856)
++.++|.++++...+... .++.....+...|.-.++.+-|+.+|+++.+.|+. +...|+.+--+|.-.+++|.++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 666666666666655422 24445555555666666666666666666666654 3445555555566666666666666
Q ss_pred HHHHHcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 559 AEMRRKNWVPD--EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 559 ~~m~~~g~~pd--~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.+....--.|+ ..+|-.|-......||+..|.+.|+-..... .-+...+|.|.---.+.|++++|..+++....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 66554322222 2345555555556666666666666655432 23455666666666666666666666666554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.87 E-value=0.00013 Score=79.60 Aligned_cols=326 Identities=11% Similarity=0.122 Sum_probs=178.0
Q ss_pred hhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003028 336 QLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEAL 415 (856)
Q Consensus 336 ~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 415 (856)
.+++...|.++|+.-. ...|+...|++.|+.=.+-..++.|..+++...- +.|++.+|-.....=.++|.+..|.
T Consensus 153 ~LgNi~gaRqiferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HhcccHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 4567777888775433 2568888888888888888888888888888775 3588888877777777888888888
Q ss_pred HHHHHHHHc-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-------------------------------
Q 003028 416 DVFKQMQVV-GC-EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLS------------------------------- 462 (856)
Q Consensus 416 ~lf~~m~~~-g~-~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~------------------------------- 462 (856)
.+|+...+. |- .-+...+++....=.+...++.|.-+|.-.+.. ++
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 877766542 10 011112222222222334455555555444332 11
Q ss_pred -------------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH--------HHHHHcCCHHHH
Q 003028 463 -------------PDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNL--VTYNIMI--------ALQAKARNYQSA 519 (856)
Q Consensus 463 -------------pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~--~ty~~Li--------~~~~~~g~~~~A 519 (856)
-|-.+|--.+..--..|+.+...++|+..+.. ++|-. ..|.-.| -.=....+.+.+
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 12223333344444445555555555555432 22210 1111111 111134455555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003028 520 LKLYRDMQNAGFEPDKVTYSIVMEVL----GHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEA 595 (856)
Q Consensus 520 ~~ll~~M~~~gi~pd~~ty~~ll~a~----~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~ 595 (856)
.++|+...+. ++-..+||.-+=-.| .+..++..|.+++.... |..|-..+|...|..-.+.+++|....++++
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5555555542 222334444322222 24455666666666554 4456666666666666666777777777776
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC
Q 003028 596 MLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLG-LKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHP 672 (856)
Q Consensus 596 m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g-~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~ 672 (856)
.++-+ +-|..+|.....-=...|+.+.|..+|.-.+.+. +......+...|+-=...|..+.+..+++.+.+....
T Consensus 463 fle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 463 FLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 66643 3455666666666666677777777776666532 1112233334444444556666666666666655443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=9e-08 Score=110.38 Aligned_cols=256 Identities=18% Similarity=0.181 Sum_probs=160.6
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003028 382 LLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGL 461 (856)
Q Consensus 382 lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~ 461 (856)
++-.+...|+.|+-+||..||.-||..|+.+.|- +|.-|+-..++-+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455666777787788888888888888777777 7777776666667777777777777777766655
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHH
Q 003028 462 SPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQN-AGFEPDKVTYSI 540 (856)
Q Consensus 462 ~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~-~gi~pd~~ty~~ 540 (856)
.|-..||..|+.+|...||+.. |+...+ -.-.++..+...|.-.....++..+.- -+.-||..+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n--- 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN--- 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---
Confidence 4667777788888888777665 222222 111223334444444444444443321 233444432
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003028 541 VMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGK-AGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVG 619 (856)
Q Consensus 541 ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k-~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g 619 (856)
++.-....|-++.+.+++..+......-.... +++-+.. ...+++-..+...+.+ .|+..+|.+++.+-...|
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~v---fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV---FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHH---HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcC
Confidence 23333444556666666554433221111111 1222222 2233444444333333 589999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCh
Q 003028 620 QLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPA 673 (856)
Q Consensus 620 ~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~ 673 (856)
+.+.|..++.+|.+.|+..+..-|..||-+ .++...++.++..|.+.|..+
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p 269 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQP 269 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCC
Confidence 999999999999999999999888888766 666677788888888888754
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-06 Score=98.86 Aligned_cols=244 Identities=15% Similarity=0.138 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHc-----CC-CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-
Q 003028 465 TFTYSVIINCLGKAGHLQAAHQLFCEMVNQ-----GC-IPNLVT-YNIMIALQAKARNYQSALKLYRDMQNA-----GF- 531 (856)
Q Consensus 465 ~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~-----g~-~pd~~t-y~~Li~~~~~~g~~~~A~~ll~~M~~~-----gi- 531 (856)
..+...|..+|...|+++.|..+++.-.+. |. .|.+.+ .+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555777888888888888888765543 21 123322 334667888899999999999888642 21
Q ss_pred CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHc---C
Q 003028 532 EPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRK-----NW-VPDE-PVYGLLVDLWGKAGNVRKAWEWYEAMLQA---G 600 (856)
Q Consensus 532 ~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~-----g~-~pd~-~~y~~Li~~~~k~g~~~~A~~l~~~m~~~---g 600 (856)
.|. ..+++.|..+|.+.|++++|+..++...+. +. .+.+ ..++.+...|+..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 222 446777788899999999988888876532 11 1222 23566777788899999999998876542 1
Q ss_pred CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC--CCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003028 601 LRPN----VPTCNSLLSAFLRVGQLSDAYHLLQGMLNL----GL--KPS-LQTYTLLLSCCTEARSPYDMGFCHELMAVS 669 (856)
Q Consensus 601 ~~pd----~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~----g~--~Pd-~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~ 669 (856)
..++ ..+++.|...|...|++++|.++|++.+.. +- .+. ...++.+-..|.+.+...++.+++.+-.
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~-- 436 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK-- 436 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH--
Confidence 2222 467999999999999999999999998752 11 222 3566777778888888877777654332
Q ss_pred CCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 003028 670 GHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAA 737 (856)
Q Consensus 670 g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~ 737 (856)
.+..... .+......+|..|...|.+.|++++|.++.+...
T Consensus 437 --------------------------~i~~~~g-~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 --------------------------DIMKLCG-PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred --------------------------HHHHHhC-CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2221111 1222345678999999999999999999988765
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.3e-07 Score=93.03 Aligned_cols=230 Identities=14% Similarity=0.050 Sum_probs=183.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK 442 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k 442 (856)
-+.|..+|.+.|.+.+|++.|..-.+. .|-+.||-.|-+.|.+-++++.|+.+|.+-.+. ++-|+....-+...+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 356788889999999999998887765 577888888889999999999999999887764 23444444556777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 443 AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKL 522 (856)
Q Consensus 443 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l 522 (856)
.++.++|.++|+...+.. +-++.....+...|.-.++.+.|++.+.++.+-|+. +...|+.+--+|.-.+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 899999999999888763 446667777777888888999999999999988876 788888888888888999999988
Q ss_pred HHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003028 523 YRDMQNAGFEPD--KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQ 598 (856)
Q Consensus 523 l~~M~~~gi~pd--~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~ 598 (856)
|.+....--.|+ ...|..+-......|++..|.+.|......+. -+...+|.|.-.-.+.|+++.|..+++....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 888776544454 23566677777788999999999988887553 3667888888888899999999999988775
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-05 Score=93.24 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003028 574 GLLVDLWGKAGNVRKAWEWYEAMLQAGLRPN-VPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTE 652 (856)
Q Consensus 574 ~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd-~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~ 652 (856)
..+...|-..|++++|++++++.+++ .|+ +..|..-...|-+.|++++|.+.++.....+ .-|...=+-....+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHH
Confidence 44445555556666666666555553 233 4455555555555666666665555555432 1122223333334445
Q ss_pred cCCcchHHHHHHHHHHc
Q 003028 653 ARSPYDMGFCHELMAVS 669 (856)
Q Consensus 653 ~g~~~~a~~l~~~m~~~ 669 (856)
.|+.++|..++....+.
T Consensus 275 a~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTRE 291 (517)
T ss_pred CCCHHHHHHHHHhhcCC
Confidence 55555555555444443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.8e-06 Score=95.94 Aligned_cols=236 Identities=18% Similarity=0.186 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC--C
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVV-----GC-EPDRVT-YCTLIDIHAKAGFLDVAMDMYKKMQAA-----GL--S 462 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~-----g~-~pd~~t-y~~Ll~~~~k~g~~~~A~~l~~~m~~~-----g~--~ 462 (856)
+...|...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++++|..+|+++... |- +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444667777777777777777665442 10 122222 223445566666666666666666432 11 1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-----C-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCC
Q 003028 463 PDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ-----G-CIPNLV-TYNIMIALQAKARNYQSALKLYRDMQNA---GFE 532 (856)
Q Consensus 463 pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~-----g-~~pd~~-ty~~Li~~~~~~g~~~~A~~ll~~M~~~---gi~ 532 (856)
.-..+++.|...|++.|++++|...++...+- | ..|.+. .++.+...|...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 11234445555666666666666655544321 1 111221 2334455555566666666665543221 111
Q ss_pred CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 003028 533 PD----KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN-------WVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQ--- 598 (856)
Q Consensus 533 pd----~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g-------~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~--- 598 (856)
++ ..+++.|...|...|++++|+++|+.+.... ..-....++.|...|.+.+++.+|.++|.+-..
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 11 2355555555556666666666655554321 011123344555555555555555555554321
Q ss_pred -cCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 599 -AGL-RP-NVPTCNSLLSAFLRVGQLSDAYHLLQGML 632 (856)
Q Consensus 599 -~g~-~p-d~~t~n~Li~ay~~~g~~e~A~~l~~~M~ 632 (856)
.|. .| ...+|..|...|...|++++|+++.+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 111 11 12345555555555555555555555443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00025 Score=80.22 Aligned_cols=402 Identities=10% Similarity=0.099 Sum_probs=239.2
Q ss_pred HHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003028 332 QVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYL 411 (856)
Q Consensus 332 ~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~ 411 (856)
.++-..++.......|+...+...+.--...|...|......+-.+.+..++....+ .++..-+-.|..+++.+++
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~ 185 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRL 185 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccch
Confidence 333334556667777777766555544455788888888888888888888888876 3555577888888899999
Q ss_pred HHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCC
Q 003028 412 NEALDVFKQMQVV------GCEPDRVTYCTLIDIHAKAGFLDV---AMDMYKKMQAAGLSPD--TFTYSVIINCLGKAGH 480 (856)
Q Consensus 412 ~~A~~lf~~m~~~------g~~pd~~ty~~Ll~~~~k~g~~~~---A~~l~~~m~~~g~~pd--~~ty~~Li~~y~k~g~ 480 (856)
++|.+.+...... ..+.+-..|.-+.+...+.-+.-. +..++..++.. -+| ...|+.|.+-|.+.|+
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhh
Confidence 9998888776421 125556667777666666544332 22333333322 234 4678999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHcCC-------
Q 003028 481 LQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKAR----------------------NYQSALKLYRDMQNAGF------- 531 (856)
Q Consensus 481 ~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g----------------------~~~~A~~ll~~M~~~gi------- 531 (856)
++.|..+|++-... ..++.-|+.+.++|+.-. +++-.+.-|+.+.+.+.
T Consensus 264 ~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 264 FEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 99999999987764 234444555555554311 11222333333332210
Q ss_pred ----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003028 532 ----EPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPD------EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGL 601 (856)
Q Consensus 532 ----~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd------~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~ 601 (856)
.-++.+|..-.. +..|+..+-...+.+..+. +.|- ...|..+.+.|-..|+++.|..+|++......
T Consensus 342 LRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 112223322222 2346677777888887763 2332 24577788889999999999999999876432
Q ss_pred CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----------CC-------CHHHHHHHHHHHHhcCCcchHHH
Q 003028 602 RPN---VPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGL----------KP-------SLQTYTLLLSCCTEARSPYDMGF 661 (856)
Q Consensus 602 ~pd---~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~----------~P-------d~~ty~~Ll~a~~~~g~~~~a~~ 661 (856)
+.- ..+|-.-...=.++.+++.|+++++......- .| +...|...++.-...|-++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 211 23455555555678889999998887653111 11 22344455555556677777888
Q ss_pred HHHHHHHcCCC-hHHHHHhcCCCCCCcccHHHHH-HHHHHHHhcCCCCchHHHHHHHHHHHHhC-C--ChhHHHHHHHHH
Q 003028 662 CHELMAVSGHP-AHMFLLSMPSPGPDGQNVRDHV-GSFLEMMHSEDRESKRGLVDAVVDFLHKS-G--LKEEAGSVWEVA 736 (856)
Q Consensus 662 l~~~m~~~g~~-~~~~~~~l~~~~~~~~~~~~~a-~~l~~~~~~~~~~~~~~~~~aLi~~y~k~-G--~~eeA~~lf~~m 736 (856)
+++.+....+. +...++.... .+.....+++ ..+.+.+.....+.--.+|+.++.-+.+. | .++.|..+|++.
T Consensus 499 vYdriidLriaTPqii~NyAmf--LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 499 VYDRIIDLRIATPQIIINYAMF--LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHH--HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 88888776653 2222221100 0111122222 22222333233333344677666555542 2 478999999999
Q ss_pred HhCCCCCCccc
Q 003028 737 AQKNVYPDAVK 747 (856)
Q Consensus 737 ~~~~~~Pd~~t 747 (856)
.+ ++.|+...
T Consensus 577 L~-~Cpp~~aK 586 (835)
T KOG2047|consen 577 LD-GCPPEHAK 586 (835)
T ss_pred Hh-cCCHHHHH
Confidence 88 77675543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-05 Score=87.17 Aligned_cols=288 Identities=14% Similarity=0.083 Sum_probs=217.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 355 GFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYC 434 (856)
Q Consensus 355 g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~ 434 (856)
+...++.....-.+-+-..+++.+..++++.+.+. .+++...+..-|.++...|+..+-..+=.+|.+.- +....+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchh
Confidence 34456666667777788889999999999988875 35566777777888888998888888888887753 66778898
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHH
Q 003028 435 TLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ--GCIPNLVTYNIMIALQAK 512 (856)
Q Consensus 435 ~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~--g~~pd~~ty~~Li~~~~~ 512 (856)
++..-|.-.|...+|.+.|.+.....- .=...|-...+.|+-.|..|.|...+...-+. |.. -. +--+---|.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP--~LYlgmey~~ 392 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LP--SLYLGMEYMR 392 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-ch--HHHHHHHHHH
Confidence 888888888999999999988765421 12467888888999999999988887765442 211 11 1223345677
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C--CCCCHhhHHHHHHHHHhcCCH
Q 003028 513 ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK----N--WVPDEPVYGLLVDLWGKAGNV 586 (856)
Q Consensus 513 ~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~----g--~~pd~~~y~~Li~~~~k~g~~ 586 (856)
.+.+..|.++|.+..... +-|...++-+--.....+.+.+|..+|+..... + ......+++.|..+|.+.+.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 888999999998876532 334556666655566778899999998877631 1 112456789999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003028 587 RKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTE 652 (856)
Q Consensus 587 ~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~ 652 (856)
++|...|+..... .+.|..++.++.-.|...|+++.|++.|.+.+. +.||..+...+|..+.+
T Consensus 472 ~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 472 EEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 9999999998865 367889999999999999999999999999885 88999888888876543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6e-05 Score=82.65 Aligned_cols=353 Identities=11% Similarity=0.005 Sum_probs=210.1
Q ss_pred hhChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHD-EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNV-VTYNRLIHSYGRANYLNEA 414 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd-~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~-~ty~~Li~~~~~~g~~~~A 414 (856)
-+++++|.+.+.|... +.|| +.-|....-+|...|++++..+.-....+. .|+- ..+..-..++-..|++++|
T Consensus 128 ~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred cccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHH
Confidence 3688999999999986 5677 778999999999999999988877776663 3432 2333333444445555544
Q ss_pred HH----------------------HHHH---------HHHcC--CCCCHHHHHHHHHHHHHc------------------
Q 003028 415 LD----------------------VFKQ---------MQVVG--CEPDRVTYCTLIDIHAKA------------------ 443 (856)
Q Consensus 415 ~~----------------------lf~~---------m~~~g--~~pd~~ty~~Ll~~~~k~------------------ 443 (856)
+. ++.+ |.+.+ +-|+.....+....+...
T Consensus 203 l~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~ 282 (606)
T KOG0547|consen 203 LFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAE 282 (606)
T ss_pred HHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHH
Confidence 32 2221 11111 234443333333322110
Q ss_pred -------C---CHHHHHHHHHHHHHC-CCCC--C---------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 003028 444 -------G---FLDVAMDMYKKMQAA-GLSP--D---------TFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLV 501 (856)
Q Consensus 444 -------g---~~~~A~~l~~~m~~~-g~~p--d---------~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ 501 (856)
+ .+.+|...+.+-... -..+ + ..+....-..+.-+|+.-.|..-|+..++.... +..
T Consensus 283 ~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~ 361 (606)
T KOG0547|consen 283 ALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FNS 361 (606)
T ss_pred HHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cch
Confidence 1 122222222211110 0011 1 111111122344578888888888888876433 222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 003028 502 TYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWG 581 (856)
Q Consensus 502 ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~ 581 (856)
.|--+..+|....+.++.+..|.+..+.... |..+|..-.+.+.-.+++++|..=|+....... -+...|--+-.+.-
T Consensus 362 lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p-e~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 362 LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP-ENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh-hhhHHHHHHHHHHH
Confidence 3777788888888888888888888775422 344666666777777888888888888776431 24445555555556
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------HHH--HHHHHHHHHh
Q 003028 582 KAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS-------LQT--YTLLLSCCTE 652 (856)
Q Consensus 582 k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd-------~~t--y~~Ll~a~~~ 652 (856)
+.+.+++++..|++.+++ ++.-+..||.....+..++++++|.+.|+..++ +.|+ ..+ -..++-. --
T Consensus 440 r~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~-qw 515 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLVL-QW 515 (606)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhhhhHhhh-ch
Confidence 778888888888888765 566677888888888888888888888888876 2333 211 1222211 12
Q ss_pred cCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 003028 653 ARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMM 701 (856)
Q Consensus 653 ~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~ 701 (856)
.+++..|..++.+..+..+........|.....+.++..++++.|.+.+
T Consensus 516 k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 516 KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2667777888888777777665555554443334444444444444333
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00014 Score=81.22 Aligned_cols=262 Identities=12% Similarity=0.014 Sum_probs=149.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003028 367 VGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYG----RANYLNEALDVFKQMQVVGCEPD-RVTYCTLIDIHA 441 (856)
Q Consensus 367 i~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~----~~g~~~~A~~lf~~m~~~g~~pd-~~ty~~Ll~~~~ 441 (856)
...+...|++++|.+++++..+.. +.|...+.. ...+. ..+..+.+.+.++. .....|+ ...+..+...+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHH
Confidence 445567788888988888877652 334444442 22222 23445555555544 1112233 334445566778
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHHcCCHHH
Q 003028 442 KAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGC-IPNL--VTYNIMIALQAKARNYQS 518 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~-~pd~--~ty~~Li~~~~~~g~~~~ 518 (856)
..|++++|...+++..+.. +.+...+..+...|...|++++|..++++...... .++. ..|..+...+...|++++
T Consensus 126 ~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 126 EAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 8888899998888888763 34566777888888888899998888888776422 1222 345567788888889999
Q ss_pred HHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCChHHHHHH--H-HHHHHcCC-CCCHhhHHHHHHHHHhcCCHHHHH
Q 003028 519 ALKLYRDMQNAGF-EPDKVTY-S--IVMEVLGHCGYLDEAEAV--F-AEMRRKNW-VPDEPVYGLLVDLWGKAGNVRKAW 590 (856)
Q Consensus 519 A~~ll~~M~~~gi-~pd~~ty-~--~ll~a~~~~g~~~~A~~l--~-~~m~~~g~-~pd~~~y~~Li~~~~k~g~~~~A~ 590 (856)
|+.+|++...... .+..... + .++.-+...|....+.+. + ........ ............++...|+.+.|.
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 284 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD 284 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence 9888888754322 1112111 1 223333334443333333 1 11111100 111111224556667778888888
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 591 EWYEAMLQAGLR--------PNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 591 ~l~~~m~~~g~~--------pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.+++.+...... ..+...-...-++...|+.++|.+++...+.
T Consensus 285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888877643211 0122222233344577888888887777654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00015 Score=78.10 Aligned_cols=299 Identities=13% Similarity=0.081 Sum_probs=211.2
Q ss_pred HHHHHHhhh--ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH
Q 003028 330 ANQVLKQLQ--DHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVV-TYNRLIHSYG 406 (856)
Q Consensus 330 ~~~vL~~l~--~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~-ty~~Li~~~~ 406 (856)
|..++..+. ++..|...|-.+....-++-|++....+.+.+...|+.++|...|+..... .|+.. ........+.
T Consensus 200 wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~ 277 (564)
T KOG1174|consen 200 WIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLG 277 (564)
T ss_pred HHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHH
Confidence 344444442 444555555555544557778889999999999999999999999988753 34322 1222223346
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003028 407 RANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQ 486 (856)
Q Consensus 407 ~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~ 486 (856)
+.|+.+....+...+.... ......|-.-........+++.|+.+-++.++.. +.+...|-.--..+...++.++|.-
T Consensus 278 ~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 278 QEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred hccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHH
Confidence 7788888877777775432 2344555555666677888999999998888753 2244455444467788899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCChHHHHHHHHHHHHc
Q 003028 487 LFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVM-EVLG-HCGYLDEAEAVFAEMRRK 564 (856)
Q Consensus 487 lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll-~a~~-~~g~~~~A~~l~~~m~~~ 564 (856)
.|....... +-+...|.-|+..|.-.|.+.+|.-+-+...+. +.-+..+.+.+- ..|. ...--++|.++++.-.+.
T Consensus 356 aFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~ 433 (564)
T KOG1174|consen 356 AFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI 433 (564)
T ss_pred HHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc
Confidence 999877642 237889999999999999999988777654433 223444554441 2222 223457888888876654
Q ss_pred CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003028 565 NWVPD-EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL 640 (856)
Q Consensus 565 g~~pd-~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~ 640 (856)
.|+ ....+.+...+...|..+.+..+++.-.. ..||....+.|.+.+...+.+.+|++.|...+. +.|+.
T Consensus 434 --~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 434 --NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred --CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 343 45667777888899999999999998876 369999999999999999999999999999886 45654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.8e-05 Score=82.09 Aligned_cols=94 Identities=15% Similarity=0.058 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGK 477 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k 477 (856)
|..+...|.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|...|+..++.. +-+..+|..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4444444455555555555555544432 2234445555555555555555555555554431 1123344444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 003028 478 AGHLQAAHQLFCEMVN 493 (856)
Q Consensus 478 ~g~~~~A~~lf~~m~~ 493 (856)
.|++++|.+.|+...+
T Consensus 145 ~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555544443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00018 Score=80.17 Aligned_cols=304 Identities=11% Similarity=-0.060 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGC-QPNV-VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~-~pd~-~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
...|..+...+...++.+.+.+.+....+... ..+. .........+...|++++|.+++++..+.. +.|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 34566666777777888887776666554311 1222 122223345677899999999999988753 444445442 2
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 438 DIHAK----AGFLDVAMDMYKKMQAAGLSPD-TFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK 512 (856)
Q Consensus 438 ~~~~k----~g~~~~A~~l~~~m~~~g~~pd-~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~ 512 (856)
..+.. .+..+.+.+.+.. .....|+ ......+...+...|++++|.+.+++..+... .+...+..+...|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHH
Confidence 22322 4455555555544 1122333 34445666788999999999999999988642 356778888999999
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHhhH-H--HHHHHHHhcCC
Q 003028 513 ARNYQSALKLYRDMQNAGF-EPDK--VTYSIVMEVLGHCGYLDEAEAVFAEMRRKNW-VPDEPVY-G--LLVDLWGKAGN 585 (856)
Q Consensus 513 ~g~~~~A~~ll~~M~~~gi-~pd~--~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~-~pd~~~y-~--~Li~~~~k~g~ 585 (856)
.|++++|+.++++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999998876532 2332 3455678888999999999999999864332 1112111 1 33333444454
Q ss_pred HHHHHHH---HHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC------CCHHHHHHHHHH--HHhc
Q 003028 586 VRKAWEW---YEAMLQAG-LRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLK------PSLQTYTLLLSC--CTEA 653 (856)
Q Consensus 586 ~~~A~~l---~~~m~~~g-~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~------Pd~~ty~~Ll~a--~~~~ 653 (856)
.+.+.++ ........ .............++...|+.++|..++..+...... ....+-..++.+ +...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3333333 22111110 0111222235677788999999999999998763222 111122223333 5577
Q ss_pred CCcchHHHHHHHHHH
Q 003028 654 RSPYDMGFCHELMAV 668 (856)
Q Consensus 654 g~~~~a~~l~~~m~~ 668 (856)
|+.++|..++.....
T Consensus 321 g~~~~A~~~L~~al~ 335 (355)
T cd05804 321 GNYATALELLGPVRD 335 (355)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888776655443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00092 Score=75.74 Aligned_cols=376 Identities=14% Similarity=0.169 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------------------HHHHHHHH
Q 003028 361 HTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANY----------------------LNEALDVF 418 (856)
Q Consensus 361 ~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~----------------------~~~A~~lf 418 (856)
..|++|.+.|.+.|.++.|..+|++.... ..++.-|..+.++|++-.. ++-.+..|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 46788888888888888888888877654 2355556666666654221 11222223
Q ss_pred HHHHHcC-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCCH
Q 003028 419 KQMQVVG-----------CEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPD------TFTYSVIINCLGKAGHL 481 (856)
Q Consensus 419 ~~m~~~g-----------~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd------~~ty~~Li~~y~k~g~~ 481 (856)
+.+.... -+.++.+|..-.. +..|+..+-...|.+.++. +.|- ...|..+.+.|-..|++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 3322211 0111222222222 1235566667777777654 2222 35677888899999999
Q ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CC------CHHHHHHH
Q 003028 482 QAAHQLFCEMVNQGCIPN---LVTYNIMIALQAKARNYQSALKLYRDMQNAGF-----------EP------DKVTYSIV 541 (856)
Q Consensus 482 ~~A~~lf~~m~~~g~~pd---~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi-----------~p------d~~ty~~l 541 (856)
+.|..+|++..+-..+-- ..+|-.-...=.+..+++.|+++++.....-- ++ +...|+..
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 999999999877543311 24566666666778888889888876643211 11 22334455
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHH---
Q 003028 542 MEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNV-PTCNSLLSAFLR--- 617 (856)
Q Consensus 542 l~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~-~t~n~Li~ay~~--- 617 (856)
++..-..|-++....+++.+....+. ++.+.-.....+-...-++++.+++++-...--.|++ ..|+..+.-+.+
T Consensus 484 ~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 55555667788888888888876554 3333222222334556678888888765543223444 468888777764
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H-HhcCCcchHHHHHHHHHHcCCChHHH-HHhcCCCCCCc-ccHHHH
Q 003028 618 VGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSC-C-TEARSPYDMGFCHELMAVSGHPAHMF-LLSMPSPGPDG-QNVRDH 693 (856)
Q Consensus 618 ~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a-~-~~~g~~~~a~~l~~~m~~~g~~~~~~-~~~l~~~~~~~-~~~~~~ 693 (856)
.-.++.|..+|++.++ |+.|...-+..|+-+ + .+.|....+..+++.....-.....+ ++.+.+.-... -+....
T Consensus 563 g~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~T 641 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRT 641 (835)
T ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCccc
Confidence 2368999999999998 777766433333322 2 34466667777777765554433221 11111100000 000011
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 003028 694 VGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPD 744 (856)
Q Consensus 694 a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~~Pd 744 (856)
-..+.+.++..+..-.+...--..++=++.|.++.|..++.--.+. +.|.
T Consensus 642 R~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr 691 (835)
T KOG2047|consen 642 REIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPR 691 (835)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCc
Confidence 1112223333222222333345566778889999999998776554 3343
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.9e-05 Score=82.67 Aligned_cols=218 Identities=12% Similarity=0.033 Sum_probs=146.4
Q ss_pred ChhHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003028 339 DHTVALGFFNWLRRQAGFKHD--EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALD 416 (856)
Q Consensus 339 ~~~~Al~~f~~m~~~~g~~pd--~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ 416 (856)
..+.++.-+..+.......|+ ...|..+..+|.+.|+.++|...|++..+.. +.+...|+.+...|...|++++|.+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 334555555555543333333 3457788888999999999999999998853 3468899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 003028 417 VFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGC 496 (856)
Q Consensus 417 lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~ 496 (856)
.|++..+.. +-+..+|..+..++...|++++|.+.|+...+.. |+..........+...++.++|...|.......
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 999998754 3356788888889999999999999999998863 443322222333455678999999997655432
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---C--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003028 497 IPNLVTYNIMIALQAKARNYQSALKLYRDMQNAG---F--EP-DKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN 565 (856)
Q Consensus 497 ~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g---i--~p-d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g 565 (856)
.++...| .+ .+...|+..++ +.+..+.+.. + .| ....|..+...+...|++++|...|+...+.+
T Consensus 196 ~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2232222 22 22334555443 3444444221 1 11 12356667777777777777777777777644
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.1e-05 Score=83.59 Aligned_cols=266 Identities=14% Similarity=0.090 Sum_probs=210.2
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDV 417 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l 417 (856)
+++...+++++.+.+..++.++ .+-.-|..+...|+..+-..+=..|.+. .+-...+|-++...|.--|+..+|.+.
T Consensus 258 c~f~~c~kit~~lle~dpfh~~--~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 258 CRFKECLKITEELLEKDPFHLP--CLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred ChHHHHHHHhHHHHhhCCCCcc--hHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 6888999999998877666555 6777788999999988888888888876 345788999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 003028 418 FKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA--GLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQG 495 (856)
Q Consensus 418 f~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~--g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g 495 (856)
|.+.-... +.=...|-.....|+-.+..+.|+..|...-+. |.. -+..| +---|.+.+.++.|.+.|.+.....
T Consensus 335 ~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 335 FSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred HHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhccHHHHHHHHHHHHhcC
Confidence 99886543 222457888899999999999999998877554 221 12233 2335778899999999999887652
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003028 496 CIPNLVTYNIMIALQAKARNYQSALKLYRDMQNA----G--FEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPD 569 (856)
Q Consensus 496 ~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~----g--i~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd 569 (856)
+-|....+-+--.....+.+.+|..+|+..... + ...-..+++.|-.+|.+.+.+++|...++...... .-+
T Consensus 411 -P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~ 488 (611)
T KOG1173|consen 411 -PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKD 488 (611)
T ss_pred -CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCc
Confidence 337778888887788889999999999876521 1 11134578889999999999999999999988754 458
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 570 EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSA 614 (856)
Q Consensus 570 ~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~a 614 (856)
..++.++.-.|...|+++.|.+.|++... +.|+-.+...++.-
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 88999999999999999999999999876 57887776766653
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.3e-05 Score=89.81 Aligned_cols=230 Identities=10% Similarity=0.108 Sum_probs=182.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 003028 427 EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSP-----DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLV 501 (856)
Q Consensus 427 ~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~p-----d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ 501 (856)
+-+...|-..|....+.++.++|.+++++.+.. +.+ -...|.++++.-...|.-+...++|++..+. .-...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHH
Confidence 445677888999999999999999999998764 321 2457888888888888889999999999875 11345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHhhHHHHHHHH
Q 003028 502 TYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNW-VPDEPVYGLLVDLW 580 (856)
Q Consensus 502 ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~-~pd~~~y~~Li~~~ 580 (856)
.|..|...|.+.+.+++|.++|+.|.+.- .-....|...+..+.+..+-+.|..++.+..+.=. .-......-.++.-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78889999999999999999999998752 24566889999999999999999999999886421 12455566667777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCcch
Q 003028 581 GKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL--QTYTLLLSCCTEARSPYD 658 (856)
Q Consensus 581 ~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~--~ty~~Ll~a~~~~g~~~~ 658 (856)
.+.|+.+.+..+|+.+... .+.-...|+.+|+.=.++|+.+.+..+|++.+..++.|-. ..|.-.|..=.+.|+.+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 8999999999999999865 3557788999999999999999999999999998887765 455555655555566444
Q ss_pred HHH
Q 003028 659 MGF 661 (856)
Q Consensus 659 a~~ 661 (856)
++.
T Consensus 1690 vE~ 1692 (1710)
T KOG1070|consen 1690 VEY 1692 (1710)
T ss_pred HHH
Confidence 433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.42 E-value=1e-05 Score=87.23 Aligned_cols=248 Identities=15% Similarity=0.176 Sum_probs=135.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003028 406 GRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAH 485 (856)
Q Consensus 406 ~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~ 485 (856)
.-.|.+..++.-.+ .....-..+......+.+++...|+++.++ .++.... .|.......+...+....+-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34566666665444 222211223344555666777777665433 3333322 455555544444333323444444
Q ss_pred HHHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003028 486 QLFCEMVNQGCIPNLVTYN-IMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK 564 (856)
Q Consensus 486 ~lf~~m~~~g~~pd~~ty~-~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~ 564 (856)
.-+++........+-.++. .....+...|++++|+++++.- .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4443333222221222222 2224455667888887777542 34556666777788888888888888888754
Q ss_pred CCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003028 565 NWVPDEPVYGLLVDLWGK----AGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL 640 (856)
Q Consensus 565 g~~pd~~~y~~Li~~~~k----~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~ 640 (856)
. .| .+...|..++.. .+.+.+|..+|+++.+. ..+++.+.|.+..++...|++++|.+++.+..+.+ .-+.
T Consensus 161 ~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~ 235 (290)
T PF04733_consen 161 D--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDP 235 (290)
T ss_dssp S--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHH
T ss_pred C--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCH
Confidence 2 23 333344444332 34678888888887654 46788888888888888888888888888876533 2234
Q ss_pred HHHHHHHHHHHhcCCc-chHHHHHHHHHHc
Q 003028 641 QTYTLLLSCCTEARSP-YDMGFCHELMAVS 669 (856)
Q Consensus 641 ~ty~~Ll~a~~~~g~~-~~a~~l~~~m~~~ 669 (856)
.|+..++-+....|+. +.+.+.+..+...
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 5666666666677775 3455566665554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00025 Score=71.29 Aligned_cols=195 Identities=12% Similarity=0.032 Sum_probs=106.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 003028 400 RLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAG 479 (856)
Q Consensus 400 ~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g 479 (856)
.|.-.|.+.|+...|..-+++..+.. +.+..+|..+...|-+.|+.+.|.+.|++..... +-+-.+.|..-..+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 34455666666666666666665543 3344555566666666666666666666655542 224445555555556666
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003028 480 HLQAAHQLFCEMVNQGCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVF 558 (856)
Q Consensus 480 ~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~ 558 (856)
++++|...|++......-+ -..+|..+.-+..+.|+++.|.+.|++..+..... ..+...+.....+.|++-.|..++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~-~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF-PPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC-ChHHHHHHHHHHhcccchHHHHHH
Confidence 6666666666555442111 23455555555556666666666666555442211 224444555555566666666666
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003028 559 AEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQ 598 (856)
Q Consensus 559 ~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~ 598 (856)
+.....+. ++....-..|..--..|+.+.|.++=..+..
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 65555443 5555555555555556666655555444443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0048 Score=70.41 Aligned_cols=96 Identities=10% Similarity=0.048 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHH-HhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 003028 643 YTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFL-LSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLH 721 (856)
Q Consensus 643 y~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~-~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~ 721 (856)
+..+...+-..|+++.+...++....+.+.....+ ....+. ...+..+++..+++.....+. +|+.+-.--.....
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~--kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIF--KHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHH--HhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHH
Confidence 33444456666777777776666666665443332 111000 011234555556665555443 46665556777788
Q ss_pred hCCChhHHHHHHHHHHhCCC
Q 003028 722 KSGLKEEAGSVWEVAAQKNV 741 (856)
Q Consensus 722 k~G~~eeA~~lf~~m~~~~~ 741 (856)
+..+.++|.++.......|.
T Consensus 451 rAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HccccHHHHHHHHHhhhccc
Confidence 88999999999888887765
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0073 Score=68.99 Aligned_cols=392 Identities=14% Similarity=0.093 Sum_probs=205.5
Q ss_pred HHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003028 333 VLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLN 412 (856)
Q Consensus 333 vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~ 412 (856)
.|..+++.++|......-.+ +-..+.+.|..+.-.+....++++|.+.|......+ +-|...|.-|--.-++.++++
T Consensus 50 ~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred hhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhh
Confidence 34556777777776655543 222355667777777777778888888887776643 235556665555556666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHccCCHHHHH
Q 003028 413 EALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAG-LSPDTFTYSVII------NCLGKAGHLQAAH 485 (856)
Q Consensus 413 ~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g-~~pd~~ty~~Li------~~y~k~g~~~~A~ 485 (856)
...+.-.++.+.. +.....|..+.-++.-.|++..|..++++.++.. -.|+...|.-.. ....+.|.+++|.
T Consensus 127 ~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~al 205 (700)
T KOG1156|consen 127 GYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKAL 205 (700)
T ss_pred hHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 6666666655432 3344556666666667777777777777776653 234544443222 2334566666666
Q ss_pred HHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChHHHH-HHHHHH-
Q 003028 486 QLFCEMVNQGCIPNLVTY-NIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLG-HCGYLDEAE-AVFAEM- 561 (856)
Q Consensus 486 ~lf~~m~~~g~~pd~~ty-~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~-~~g~~~~A~-~l~~~m- 561 (856)
+.+...... ..|-..+ .+-...+.+.+++++|..+|..+... .||...|...+..+. +.-+.-++. .+|...
T Consensus 206 e~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 206 EHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred HHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 666554432 1122222 23445566677777777777766654 355554443333222 222222222 333332
Q ss_pred ---------------------------------HHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH----HcC----
Q 003028 562 ---------------------------------RRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML----QAG---- 600 (856)
Q Consensus 562 ---------------------------------~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~----~~g---- 600 (856)
.+.|+. .++..+...|-.-...+-.+++.-.+. ..|
T Consensus 282 ~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 282 EKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred hcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCc
Confidence 222322 123333333322111111111111111 111
Q ss_pred ------CCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 003028 601 ------LRPNVPTCN--SLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQT-YTLLLSCCTEARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 601 ------~~pd~~t~n--~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~t-y~~Ll~a~~~~g~~~~a~~l~~~m~~~g~ 671 (856)
-+|....|. .++..|-..|+++.|...++..++ ..|+..- |..=.+.+...|++++|..++++..+...
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 145555554 456777788888888888888775 4666543 33333557777888888887777666544
Q ss_pred ChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCc--hH------HHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 003028 672 PAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRES--KR------GLVDAVVDFLHKSGLKEEAGSVWEVAAQ 738 (856)
Q Consensus 672 ~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~--~~------~~~~aLi~~y~k~G~~eeA~~lf~~m~~ 738 (856)
+ +.+++.-...|.-..+..+.|..+.......+... +. .....=+.+|.++|++.+|++=|..+..
T Consensus 437 a-DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 437 A-DRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred h-hHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 2 22222111111111234455555555444444210 10 0111235678888888888777666543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00031 Score=70.62 Aligned_cols=205 Identities=16% Similarity=0.037 Sum_probs=122.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003028 434 CTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKA 513 (856)
Q Consensus 434 ~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~ 513 (856)
.-|.-.|...|+...|.+-+++.++.. +-+..+|..+...|-+.|+.+.|.+-|+...+.... +....|..-..+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 334456667777777777777776653 234556666667777777777777777666654222 455566666666677
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 003028 514 RNYQSALKLYRDMQNAGFEPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEW 592 (856)
Q Consensus 514 g~~~~A~~ll~~M~~~gi~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l 592 (856)
|++++|...|++....-..+. ..||..+.-+..+.|+.+.|+..|++..+.... ...+.-.+.+...+.|++-.|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHH
Confidence 777777777776665422222 235555555556667777777777766654322 234455566666666777777766
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003028 593 YEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYT 644 (856)
Q Consensus 593 ~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~ 644 (856)
++.....+. ++..+....|..-...|+.+.|-+.=..+.. ..|...-|-
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q 244 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQ 244 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHH
Confidence 666665543 6666666666666666666666555444443 344444443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.001 Score=71.81 Aligned_cols=271 Identities=14% Similarity=0.025 Sum_probs=163.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003028 391 CQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVT-YCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYS 469 (856)
Q Consensus 391 ~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t-y~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~ 469 (856)
++-|+.....+.+++...|+.++|...|++.+.. .|+..+ .....-.+.+.|+++....+...+.... .-+..-|-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 4456777778888888888888888888877643 333222 2222334456777777777777665431 12233333
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003028 470 VIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCG 549 (856)
Q Consensus 470 ~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g 549 (856)
.-........+++.|..+-++-++... .++..|-.--..+...++.++|.-.|+..+... +-+...|.-|+..|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhc
Confidence 334444556677777777776665421 133333333356667778888888887776542 234667888888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHH-HHHH-hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 003028 550 YLDEAEAVFAEMRRKNWVPDEPVYGLLV-DLWG-KAGNVRKAWEWYEAMLQAGLRPN-VPTCNSLLSAFLRVGQLSDAYH 626 (856)
Q Consensus 550 ~~~~A~~l~~~m~~~g~~pd~~~y~~Li-~~~~-k~g~~~~A~~l~~~m~~~g~~pd-~~t~n~Li~ay~~~g~~e~A~~ 626 (856)
.+.+|.-+-....+. +.-+..+.+.+- ..+. ...--++|.++++.-... .|+ ....+.+..-+...|..++++.
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHH
Confidence 887777665554432 122334443331 2221 112236777777766552 344 3455666677777788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 003028 627 LLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 627 l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~ 671 (856)
++++.+. ..||....+.|-+.+...+.+.++...+....+.++
T Consensus 460 LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 460 LLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 8877775 567777777777777766666666655555544444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0017 Score=82.19 Aligned_cols=338 Identities=12% Similarity=-0.005 Sum_probs=163.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHHHc
Q 003028 372 RARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGC------EPD--RVTYCTLIDIHAKA 443 (856)
Q Consensus 372 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~------~pd--~~ty~~Ll~~~~k~ 443 (856)
..|+++.+..+++.+.......+..........+...|++++|..++......-- .+. ......+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 3455555555554442111111122222333444556677777777766543210 011 11112222334566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcC
Q 003028 444 GFLDVAMDMYKKMQAAGLSPDT----FTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GCI-PNLVTYNIMIALQAKAR 514 (856)
Q Consensus 444 g~~~~A~~l~~~m~~~g~~pd~----~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~~-pd~~ty~~Li~~~~~~g 514 (856)
|++++|...+++..+.-...+. ...+.+...+...|++++|...+.+.... |.. ....++..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 7777777777766543111111 23344445566677777777777665532 100 01223444555666677
Q ss_pred CHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCC--CHhhHHHHHHHHHhc
Q 003028 515 NYQSALKLYRDMQNA----GFE--P-DKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK--NWVP--DEPVYGLLVDLWGKA 583 (856)
Q Consensus 515 ~~~~A~~ll~~M~~~----gi~--p-d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~--g~~p--d~~~y~~Li~~~~k~ 583 (856)
++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 777777776655431 211 1 1222333444455567777777776665432 1111 122333445556667
Q ss_pred CCHHHHHHHHHHHHHcCC-CCCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcC
Q 003028 584 GNVRKAWEWYEAMLQAGL-RPNVPTC-----NSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQ---TYTLLLSCCTEAR 654 (856)
Q Consensus 584 g~~~~A~~l~~~m~~~g~-~pd~~t~-----n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~---ty~~Ll~a~~~~g 654 (856)
|+++.|...++......- ......+ ...+..+...|+.+.|...+............. .+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 777777777666643100 0001111 111233445667777777665544311111111 1223333455556
Q ss_pred CcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHhCCChhHHHHHH
Q 003028 655 SPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRES-KRGLVDAVVDFLHKSGLKEEAGSVW 733 (856)
Q Consensus 655 ~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~-~~~~~~aLi~~y~k~G~~eeA~~lf 733 (856)
+.++|...++..... . ...+... ...++..+..+|.+.|+.++|...+
T Consensus 706 ~~~~A~~~l~~al~~----------------------------~---~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L 754 (903)
T PRK04841 706 QFDEAEIILEELNEN----------------------------A---RSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVL 754 (903)
T ss_pred CHHHHHHHHHHHHHH----------------------------H---HHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555444333221 0 1111111 2335567888999999999999999
Q ss_pred HHHHhCC
Q 003028 734 EVAAQKN 740 (856)
Q Consensus 734 ~~m~~~~ 740 (856)
.+..+..
T Consensus 755 ~~Al~la 761 (903)
T PRK04841 755 LEALKLA 761 (903)
T ss_pred HHHHHHh
Confidence 9998764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0018 Score=68.56 Aligned_cols=345 Identities=11% Similarity=0.028 Sum_probs=175.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003028 366 MVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF 445 (856)
Q Consensus 366 Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~ 445 (856)
+..++...|++++|...+..+... -.++...|-.|..++.-.|.+.+|..+..+. +.++..-..|+..-.+.++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-----~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHHhhC-----CCChHHHHHHHHHHHHhCc
Confidence 345556677777777777776653 2456666666666666677777777665543 2334444555666666777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHH
Q 003028 446 LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIM-IALQAKARNYQSALKLYR 524 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~L-i~~~~~~g~~~~A~~ll~ 524 (856)
-++-..+.+.+... ..---+|.......-.+.+|.+++...... .|+-...|.- .-+|.+..-++-+.++++
T Consensus 137 Ek~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 137 EKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred HHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 76666666665432 122223333333444567777777776653 2444444443 334556666666666666
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhc--CC---------------------------------hHHHHHHHHHHHHcCCCC
Q 003028 525 DMQNAGFEPD-KVTYSIVMEVLGHC--GY---------------------------------LDEAEAVFAEMRRKNWVP 568 (856)
Q Consensus 525 ~M~~~gi~pd-~~ty~~ll~a~~~~--g~---------------------------------~~~A~~l~~~m~~~g~~p 568 (856)
--... -|| ....+..+....+. |+ -+.|.+++--+.+. -
T Consensus 210 vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--I- 284 (557)
T KOG3785|consen 210 VYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--I- 284 (557)
T ss_pred HHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--C-
Confidence 54443 123 22222222111111 22 12222222222211 1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCC-------HHHHHHHHHHHHHCCCCCC
Q 003028 569 DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSA--FLRVGQ-------LSDAYHLLQGMLNLGLKPS 639 (856)
Q Consensus 569 d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~a--y~~~g~-------~e~A~~l~~~M~~~g~~Pd 639 (856)
+..--.|+-.|.+.+++.+|..+.+++. |... |..++.+ ++..|+ ..-|...|+-.-+.+..-|
T Consensus 285 -PEARlNL~iYyL~q~dVqeA~~L~Kdl~-----PttP-~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecD 357 (557)
T KOG3785|consen 285 -PEARLNLIIYYLNQNDVQEAISLCKDLD-----PTTP-YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECD 357 (557)
T ss_pred -hHhhhhheeeecccccHHHHHHHHhhcC-----CCCh-HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccc
Confidence 1222344556778888888888877664 2211 2222222 223332 4445555554433333322
Q ss_pred H-HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 003028 640 L-QTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVD 718 (856)
Q Consensus 640 ~-~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~ 718 (856)
. .-..++.+++.-..++++....+.-+...-...+.|...+..+....+ ...++++++-.+...++..+..-...|..
T Consensus 358 TIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atg-ny~eaEelf~~is~~~ikn~~~Y~s~LAr 436 (557)
T KOG3785|consen 358 TIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATG-NYVEAEELFIRISGPEIKNKILYKSMLAR 436 (557)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhc-ChHHHHHHHhhhcChhhhhhHHHHHHHHH
Confidence 1 122233334444445566666666665554444444444333222222 34555666655555544434333445667
Q ss_pred HHHhCCChhHHHHHHHHH
Q 003028 719 FLHKSGLKEEAGSVWEVA 736 (856)
Q Consensus 719 ~y~k~G~~eeA~~lf~~m 736 (856)
.|.+++.++-|++++=++
T Consensus 437 Cyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHhcCCchHHHHHHHhc
Confidence 888999999887665544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0015 Score=69.13 Aligned_cols=129 Identities=11% Similarity=0.051 Sum_probs=68.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003028 541 VMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQ 620 (856)
Q Consensus 541 ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~ 620 (856)
+..++.-..++++..-.+..++..-...|...| .+.++++..|++.+|+++|-.+....++-+..-...|..+|.+++.
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCC
Confidence 333344444555555555555543333233322 3566677777777777777666543333233333445566777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCcchHHHHHHHHHHcCCCh
Q 003028 621 LSDAYHLLQGMLNLGLKPSLQTYTLLL-SCCTEARSPYDMGFCHELMAVSGHPA 673 (856)
Q Consensus 621 ~e~A~~l~~~M~~~g~~Pd~~ty~~Ll-~a~~~~g~~~~a~~l~~~m~~~g~~~ 673 (856)
++-|++++-++. -..+..+..-+| +.|.+.+.+.-+.+.++++....+.+
T Consensus 444 P~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 444 PQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred chHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 777766654442 222333333333 34666776666666666666665544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.4e-07 Score=62.22 Aligned_cols=32 Identities=50% Similarity=1.026 Sum_probs=17.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 390 GCQPNVVTYNRLIHSYGRANYLNEALDVFKQM 421 (856)
Q Consensus 390 g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m 421 (856)
|+.||..|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.27 E-value=1e-06 Score=61.99 Aligned_cols=32 Identities=31% Similarity=0.727 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 600 GLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGM 631 (856)
Q Consensus 600 g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M 631 (856)
|+.||..|||+||.+|++.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777776
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0002 Score=81.30 Aligned_cols=217 Identities=20% Similarity=0.223 Sum_probs=138.4
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 003028 475 LGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEA 554 (856)
Q Consensus 475 y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A 554 (856)
+...|++|.|...|-+... .-.-|.+......|.+|+.+++.+++.... ..-|..+.+.|+..|+++.|
T Consensus 716 l~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~a 784 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIA 784 (1636)
T ss_pred HHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHH
Confidence 3445555555555443321 122355666778899999999988876432 23567788889999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003028 555 EAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNL 634 (856)
Q Consensus 555 ~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~ 634 (856)
+++|-+. ..++-.|++|.+.|+++.|.++-++... -.-....|-+-..-+-++|++.+|.+++-.+.
T Consensus 785 e~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~-- 851 (1636)
T KOG3616|consen 785 EELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG-- 851 (1636)
T ss_pred HHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc--
Confidence 9998653 2467788999999999999998776642 23455667777777888999999998886543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHH
Q 003028 635 GLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVD 714 (856)
Q Consensus 635 g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 714 (856)
.|+ ..|..|-+.|..+++..+.++- +|...|.........+...+....+-..+++. .-|.
T Consensus 852 --~p~-----~aiqmydk~~~~ddmirlv~k~--h~d~l~dt~~~f~~e~e~~g~lkaae~~flea----------~d~k 912 (1636)
T KOG3616|consen 852 --EPD-----KAIQMYDKHGLDDDMIRLVEKH--HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA----------GDFK 912 (1636)
T ss_pred --Cch-----HHHHHHHhhCcchHHHHHHHHh--ChhhhhHHHHHHHHHHHhccChhHHHHHHHhh----------hhHH
Confidence 354 3466777888877777665432 22223333333222222222222222222221 2256
Q ss_pred HHHHHHHhCCChhHHHHHHH
Q 003028 715 AVVDFLHKSGLKEEAGSVWE 734 (856)
Q Consensus 715 aLi~~y~k~G~~eeA~~lf~ 734 (856)
+-+++|-.++.|++|-++-+
T Consensus 913 aavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 913 AAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHhhhhhhHHHHHHHHh
Confidence 77888888888888876644
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.8e-05 Score=83.84 Aligned_cols=226 Identities=16% Similarity=0.145 Sum_probs=136.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSP-DTFTYSVIINCL 475 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~p-d~~ty~~Li~~y 475 (856)
...-+.++|.-.|+.+.++ .++.... .|.......+...+....+-+.+..-+++........ +.........+|
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3444556777777766443 3333322 5555555444433333334444444444433332222 223333333566
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCh
Q 003028 476 GKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGH----CGYL 551 (856)
Q Consensus 476 ~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~----~g~~ 551 (856)
...|++++|.++++.- .+.......+..|.+.++++.|.+.++.|.+.. .| .+...+..++.. .+.+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhH
Confidence 7778888888877643 256677777888888888888888888887642 34 345556555543 2368
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHH
Q 003028 552 DEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQL-SDAYHLLQG 630 (856)
Q Consensus 552 ~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~-e~A~~l~~~ 630 (856)
.+|..+|+++.. ...+++.+.+.+..++...|++++|..++++..+.. +-+..+...+|......|+. +.+.+++.+
T Consensus 184 ~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 888888888765 345678888888888888899999988888876543 34566666677777777777 566777777
Q ss_pred HHHCCCCCC
Q 003028 631 MLNLGLKPS 639 (856)
Q Consensus 631 M~~~g~~Pd 639 (856)
+.. ..|+
T Consensus 262 L~~--~~p~ 268 (290)
T PF04733_consen 262 LKQ--SNPN 268 (290)
T ss_dssp CHH--HTTT
T ss_pred HHH--hCCC
Confidence 775 3454
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00034 Score=80.66 Aligned_cols=243 Identities=16% Similarity=0.188 Sum_probs=138.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C--------CCCCHHHHHHHHHHH
Q 003028 370 LGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVV-G--------CEPDRVTYCTLIDIH 440 (856)
Q Consensus 370 ~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~-g--------~~pd~~ty~~Ll~~~ 440 (856)
|..-|+.+.|.+-...+. +...|..|.++|.+..+++-|.-.+-.|... | -.++ .+=.-+.-..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 334455555544444333 2344555555555555555555544444321 0 0111 1111122223
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 441 AKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSAL 520 (856)
Q Consensus 441 ~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 520 (856)
...|.+++|+.+|.+.++ |..|=+.|-..|.+++|.++-+.=-.-. =..||......+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHH
Confidence 455666666666666544 2334445556666666666554321110 1123444444444455555555
Q ss_pred HHHHHH----------HHcC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 003028 521 KLYRDM----------QNAG---------FEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWG 581 (856)
Q Consensus 521 ~ll~~M----------~~~g---------i~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~ 581 (856)
+.|++. .... -..|...|..--..+-..|+++.|+.+|...+. |-.++...|
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence 555432 1110 112444555566666677888888888877654 567788888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003028 582 KAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARS 655 (856)
Q Consensus 582 k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~ 655 (856)
-.|+.++|-++-++- -|....-.|.+.|-..|++.+|..+|-+.. +|...|+.|.+.+.
T Consensus 950 ~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~ 1008 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDM 1008 (1416)
T ss_pred eccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCH
Confidence 899999998887653 366777889999999999999999998764 56777777755543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0099 Score=69.22 Aligned_cols=378 Identities=15% Similarity=0.100 Sum_probs=186.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHH
Q 003028 356 FKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEP-DRVTYC 434 (856)
Q Consensus 356 ~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p-d~~ty~ 434 (856)
+.-|...|..|.-++..+|+++.+.+.|++.... +--....|+.+-..|.-.|.-..|..++++-....-.| |+..+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4456777888888888888888888888877643 22355667777777888888777877777654332123 333333
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHccC-----------CHHHHHHHHHHHHHcC-CC
Q 003028 435 TLIDIHA-KAGFLDVAMDMYKKMQAA--GL--SPDTFTYSVIINCLGKAG-----------HLQAAHQLFCEMVNQG-CI 497 (856)
Q Consensus 435 ~Ll~~~~-k~g~~~~A~~l~~~m~~~--g~--~pd~~ty~~Li~~y~k~g-----------~~~~A~~lf~~m~~~g-~~ 497 (856)
..-..|. +.+.+++++.+-.+.+.. +. ......|-.+--+|...- ...++.+.+++..+.+ ..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3333333 335556655555555441 10 112233333333332211 1234445555544432 22
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC--------
Q 003028 498 PNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK-NWVP-------- 568 (856)
Q Consensus 498 pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~-g~~p-------- 568 (856)
|++.-| +.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++.+|+.+.+..... +...
T Consensus 478 p~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred chHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 222222 22234455566666666666665544455555555555555556666666655544432 1100
Q ss_pred ----------CHhhHHHHHHHHHh---------c--------------CCHHHHHHHHHHH--------HHcC-------
Q 003028 569 ----------DEPVYGLLVDLWGK---------A--------------GNVRKAWEWYEAM--------LQAG------- 600 (856)
Q Consensus 569 ----------d~~~y~~Li~~~~k---------~--------------g~~~~A~~l~~~m--------~~~g------- 600 (856)
-..|...++..+-. . .+..+|......+ ...+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 00111111111110 0 0000010000000 0000
Q ss_pred --C--CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003028 601 --L--RPN------VPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSG 670 (856)
Q Consensus 601 --~--~pd------~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g 670 (856)
+ .|+ ...|......|.+.+..++|...+.+.... ..-....|...-..+...|.+++|...+......+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 0 011 235666677777777777777666666542 12222333333344556666677766666555554
Q ss_pred CChHHHHHhcCCCCCC-cccHH-HHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 003028 671 HPAHMFLLSMPSPGPD-GQNVR-DHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQK 739 (856)
Q Consensus 671 ~~~~~~~~~l~~~~~~-~~~~~-~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~ 739 (856)
+.....+..+...+.. |.... +...-+.+.+..... +...|-.|+..+-+.|+.++|.+.|....+.
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~--n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL--NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 4322222211111111 11112 222233344443333 3456778999999999999999999988765
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.001 Score=76.84 Aligned_cols=226 Identities=16% Similarity=0.221 Sum_probs=158.9
Q ss_pred hhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C--------CCCCHHHHHHHHHHHHh
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRD-G--------CQPNVVTYNRLIHSYGR 407 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~-g--------~~pd~~ty~~Li~~~~~ 407 (856)
.++.+.|.+-.+.++ +...|..|..+|.+..+++-|.-.+-.|... | -.++ .+=....-....
T Consensus 741 iG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 378888888877765 4568999999999999999888777766532 1 1121 222222233467
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 003028 408 ANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQL 487 (856)
Q Consensus 408 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~l 487 (856)
.|.+++|+.+|.+-++ |..|=..|...|.+++|.++-+.=.+..+ ..||..-..-+-..++.+.|++.
T Consensus 813 LgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHH
Confidence 7999999999998875 34455667788999999998775433322 24565556666667778777777
Q ss_pred HHHH----------HHcC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003028 488 FCEM----------VNQG---------CIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHC 548 (856)
Q Consensus 488 f~~m----------~~~g---------~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~ 548 (856)
|++- .... -..|...|.-.-..+-..|+.+.|+.+|...++ |-+++...|-.
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence 6642 1110 012444455555555668888999988887763 56788888899
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 549 GYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 549 g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
|+.++|-++-++ .| |....-.|.+.|-..|++.+|..+|-+..
T Consensus 952 Gk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 952 GKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999988654 23 55677788999999999999999998765
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0092 Score=67.51 Aligned_cols=110 Identities=19% Similarity=0.149 Sum_probs=79.3
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHhcCCHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRL----IHSYGRANYLNE 413 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~L----i~~~~~~g~~~~ 413 (856)
+++++|++....+.. +.+-+...+..=+-++.+.+++++|+.+.+.-. -..+++.. ..+..+.+..++
T Consensus 26 ~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~------~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 26 GEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG------ALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred hHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc------hhhhcchhhHHHHHHHHHcccHHH
Confidence 577889998888874 334456667777788889999999996554322 12223333 334457899999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003028 414 ALDVFKQMQVVGCEPD-RVTYCTLIDIHAKAGFLDVAMDMYKKMQAAG 460 (856)
Q Consensus 414 A~~lf~~m~~~g~~pd-~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g 460 (856)
|+..++ |+.++ ..+...-...|.+.|++++|..+|+.+.+++
T Consensus 98 alk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 98 ALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 999998 33343 3467777788899999999999999998875
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0037 Score=78.99 Aligned_cols=299 Identities=15% Similarity=0.084 Sum_probs=151.8
Q ss_pred hcCCHHHHHHHHHHHHHcCC------CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 003028 372 RARQFGAINKLLDQMVRDGC------QPNV--VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD----RVTYCTLIDI 439 (856)
Q Consensus 372 k~g~~~~A~~lf~~m~~~g~------~pd~--~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd----~~ty~~Ll~~ 439 (856)
..|++++|..++......-- .+.. .....+-..+...|++++|...+++....--..+ ...++.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 45667777766665543200 0111 1112222344567777777777776654211111 1234455555
Q ss_pred HHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAA----GL-SPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GCI--P-NLVTYNIMI 507 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~----g~-~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~~--p-d~~ty~~Li 507 (856)
+...|++++|...+++.... |- .....++..+...+...|++++|...+++.... +.. + ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 66677777777777666532 11 111234444555666777777777776654431 211 1 223344455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHh--h--HHHHH
Q 003028 508 ALQAKARNYQSALKLYRDMQNA--GFEPD--KVTYSIVMEVLGHCGYLDEAEAVFAEMRRK--NWVPDEP--V--YGLLV 577 (856)
Q Consensus 508 ~~~~~~g~~~~A~~ll~~M~~~--gi~pd--~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~--g~~pd~~--~--y~~Li 577 (856)
..+...|++++|...+.+.... ...+. ...+..+...+...|+.++|...+...... ....... . ....+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 5566667777777777665432 11121 223334445566667777777777666432 1110000 0 01122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHH
Q 003028 578 DLWGKAGNVRKAWEWYEAMLQAGLRPN---VPTCNSLLSAFLRVGQLSDAYHLLQGMLN----LGLKPSL-QTYTLLLSC 649 (856)
Q Consensus 578 ~~~~k~g~~~~A~~l~~~m~~~g~~pd---~~t~n~Li~ay~~~g~~e~A~~l~~~M~~----~g~~Pd~-~ty~~Ll~a 649 (856)
..+...|+.+.|..++........... ...+..+..++...|++++|..++++... .|..++. .++..+-.+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 334456777777777665443211111 11134556666777777777777776654 2222222 334444445
Q ss_pred HHhcCCcchHHHHHHHHHHcC
Q 003028 650 CTEARSPYDMGFCHELMAVSG 670 (856)
Q Consensus 650 ~~~~g~~~~a~~l~~~m~~~g 670 (856)
+...|+.++|...+....+..
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 667777777766666555543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0099 Score=67.28 Aligned_cols=146 Identities=13% Similarity=0.038 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 003028 585 NVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQ--------GMLNLGLKPSLQTYTLLLSCCTEARSP 656 (856)
Q Consensus 585 ~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~--------~M~~~g~~Pd~~ty~~Ll~a~~~~g~~ 656 (856)
.+.+|.+++...-+..-.-.....-.++......|+++.|++++. .+.+.+..|-.+.+ +...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~a--iv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGA--IVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHH--HHHHHHhccCC
Confidence 466777777766654322224555666777778888888888888 66665556654443 33444555554
Q ss_pred chHHHHHHHHHHc------CCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHH
Q 003028 657 YDMGFCHELMAVS------GHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAG 730 (856)
Q Consensus 657 ~~a~~l~~~m~~~------g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~ 730 (856)
+.+..++...... +......+......+....+..+++...++.+..... .+..+...++.+|++. +++.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~-~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP-NDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC-chHHHHHHHHHHHHhc-CHHHHH
Confidence 5555554433221 1111111111111111111234555666666655433 3566677899999876 457776
Q ss_pred HHHH
Q 003028 731 SVWE 734 (856)
Q Consensus 731 ~lf~ 734 (856)
.+-+
T Consensus 512 ~l~k 515 (652)
T KOG2376|consen 512 SLSK 515 (652)
T ss_pred HHhh
Confidence 5543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00086 Score=69.42 Aligned_cols=183 Identities=17% Similarity=0.174 Sum_probs=93.8
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRL-IHSYGRANYLNEALD 416 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~L-i~~~~~~g~~~~A~~ 416 (856)
+++..|.+++....+.. ..+....+.|..+|....++..|-..++++... .|...-|... ...+-+.+.+.+|+.
T Consensus 24 ~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred hhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 34555555555443321 124455566666666666666666666666543 3444444332 234455566666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 003028 417 VFKQMQVVGCEPDRVTYCTLIDI--HAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 417 lf~~m~~~g~~pd~~ty~~Ll~~--~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
+...|... ++...-..-+.+ ....+++..+..+++++...| +..+.+...-...+.|++++|.+-|....+-
T Consensus 100 V~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 100 VAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred HHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 66666431 222111111221 123455555565655543221 2333333333445667777777777666654
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003028 495 GCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGF 531 (856)
Q Consensus 495 g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi 531 (856)
+---....||.-+. ..+.|+++.|+++..++.+.|+
T Consensus 174 sGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 174 SGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred cCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhh
Confidence 33334556665443 3355667777777777766654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0028 Score=77.53 Aligned_cols=214 Identities=13% Similarity=0.151 Sum_probs=121.5
Q ss_pred hhChhHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHD---EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNE 413 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd---~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~ 413 (856)
+.+.+.|+++++++...-+++-. ...|.++++.-...|.-+...++|++..+. + -....|..|...|.+...+++
T Consensus 1471 lsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-c-d~~~V~~~L~~iy~k~ek~~~ 1548 (1710)
T KOG1070|consen 1471 LSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-C-DAYTVHLKLLGIYEKSEKNDE 1548 (1710)
T ss_pred hhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-c-chHHHHHHHHHHHHHhhcchh
Confidence 34556666666666543222211 235666666666666666666677666653 1 123346666667777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003028 414 ALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSP--DTFTYSVIINCLGKAGHLQAAHQLFCEM 491 (856)
Q Consensus 414 A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~p--d~~ty~~Li~~y~k~g~~~~A~~lf~~m 491 (856)
|.++|+.|.+. +......|..++..+.+..+-+.|..++.+..+. ++- ........+..-.+.|+.+.+..+|+.+
T Consensus 1549 A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgl 1626 (1710)
T KOG1070|consen 1549 ADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGL 1626 (1710)
T ss_pred HHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHH
Confidence 77777777553 2345556666666666666666666666666553 111 2233333444455666777777777666
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHH
Q 003028 492 VNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD--KVTYSIVMEVLGHCGYLDEAE 555 (856)
Q Consensus 492 ~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd--~~ty~~ll~a~~~~g~~~~A~ 555 (856)
..... .-...|+..|+.=.++|+.+.+..+|++....++.|- .+.|.-.++.--..|+-..++
T Consensus 1627 l~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1627 LSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred HhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 65422 2455677777777777777777777777666665544 233444444333444443333
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0044 Score=67.84 Aligned_cols=205 Identities=13% Similarity=0.078 Sum_probs=92.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH--HH
Q 003028 372 RARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRAN-YLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFL--DV 448 (856)
Q Consensus 372 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g-~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~--~~ 448 (856)
..++.++|..+++++++.. +-+...|+..-.++...+ .++++++.++++.+.. +-+..+|+..-.++.+.|.. ++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 3344555555555555421 112233433333333334 3455555555555432 23333444433333344431 44
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CC----HHHHHH
Q 003028 449 AMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKA---RN----YQSALK 521 (856)
Q Consensus 449 A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~---g~----~~~A~~ 521 (856)
++.+++++++.. +-|-.+|+-...++...|+++++.+.++++.+.+.. |...|+.....+.+. |. .++.++
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 455555555442 224555555555555555555666666555554333 444454444333332 11 134445
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 003028 522 LYRDMQNAGFEPDKVTYSIVMEVLGHC----GYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGK 582 (856)
Q Consensus 522 ll~~M~~~gi~pd~~ty~~ll~a~~~~----g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k 582 (856)
+..++.... +-|...|+.+...+... +...+|..++.+..+.+ ..+......|++.|+.
T Consensus 205 y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 554444432 12344555555444442 23344555555554433 2244555666666654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0016 Score=75.22 Aligned_cols=214 Identities=13% Similarity=0.104 Sum_probs=134.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 003028 399 NRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKA 478 (856)
Q Consensus 399 ~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~ 478 (856)
..+...+...|-...|+.+|+++. .|.-+|.+|+..|+..+|..+..+..+. +||...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 445566667777777777777664 3455666777777777777777766653 56777777777766666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003028 479 GHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVF 558 (856)
Q Consensus 479 g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~ 558 (856)
.-+++|.++++..... .-..+.......++++++.+.|+.-.+.. ..-..+|-.+--+..+.+++..|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 6677777777654332 11111112223567777777776544321 112335555555556667777777777
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 559 AEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 559 ~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.....-. +-+...||.+-.+|.+.++-.+|...+.+..+.. .-+...|...+..-.+.|.+++|++.+.+|..
T Consensus 543 ~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 543 HRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 7666532 2245667777777777777777777777777654 44555666666677777777777777777664
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.007 Score=71.77 Aligned_cols=201 Identities=13% Similarity=0.180 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003028 396 VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCL 475 (856)
Q Consensus 396 ~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y 475 (856)
..|..+..+-.+.+.+.+|.+-|-+. -|+..|..+++.+.+.|.+++-.+.+....+..-.|. .=+.||-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHH
Confidence 34555555555555555554444322 2334445555555555555555544444443332222 223444455
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003028 476 GKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAE 555 (856)
Q Consensus 476 ~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~ 555 (856)
++.+++.+.++++. -||......+-+-|...+.++.|.-+|... .-|..|...+...|++..|.
T Consensus 1177 Akt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHH
Confidence 55554444333221 134444444444444455554444444322 12344444444444444443
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 556 AVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGM 631 (856)
Q Consensus 556 ~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M 631 (856)
..-. +. .+..+|..+-.+|...+.+.-| +|....+-....-...|+.-|...|-+++.+.+++..
T Consensus 1241 D~aR---KA---ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1241 DAAR---KA---NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHhh---hc---cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 3221 11 1333444444444443333322 1211112223333445555555555555555555443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00056 Score=78.76 Aligned_cols=238 Identities=13% Similarity=0.084 Sum_probs=184.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003028 357 KHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTL 436 (856)
Q Consensus 357 ~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~L 436 (856)
.|--..-..+...+.+.|-...|..+|+.+.. |.-+|.+|+..|+..+|..+..+-.+. +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 33334445678889999999999999987653 888999999999999999999888773 7999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003028 437 IDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNY 516 (856)
Q Consensus 437 l~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~ 516 (856)
.+.....--+++|.++.+..-.. .-..+.......++++++.+.|+.-.+.. +.-..+|-.+-.+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 99888888889999988775332 22222223344789999999998766542 23567888888888999999
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003028 517 QSALKLYRDMQNAGFEPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEA 595 (856)
Q Consensus 517 ~~A~~ll~~M~~~gi~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~ 595 (856)
..|.+.|..-... .|| ...|+.+-.+|.+.++..+|...+++..+.+ .-+..+|...+....+.|.+++|.+.+++
T Consensus 536 q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 9999999987763 565 5689999999999999999999999999987 44667788888888999999999999999
Q ss_pred HHHcC-CCCCHHHHHHHHHHHH
Q 003028 596 MLQAG-LRPNVPTCNSLLSAFL 616 (856)
Q Consensus 596 m~~~g-~~pd~~t~n~Li~ay~ 616 (856)
+.+.. ...|......++....
T Consensus 613 ll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 613 LLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHhhhhcccchhhHHHHHHHH
Confidence 87521 1124444444444433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0027 Score=77.17 Aligned_cols=223 Identities=7% Similarity=0.046 Sum_probs=140.6
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003028 355 GFKH-DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNV-VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVT 432 (856)
Q Consensus 355 g~~p-d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~-~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t 432 (856)
.+.| +...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+++.-+ .
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~------------ 88 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N------------ 88 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h------------
Confidence 3444 4678899999999999999999999977764 3543 3333333466677776665555 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 433 YCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK 512 (856)
Q Consensus 433 y~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~ 512 (856)
++.......++..+..++..|... .-+...+..|..+|-+.|+.++|..+++++.+.. +-|....|.+...|..
T Consensus 89 ---~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 89 ---LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred ---hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 233333344454444445555543 2355677788888888888888888888888876 3377888888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------------------CCCCCHhhH
Q 003028 513 ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK-------------------NWVPDEPVY 573 (856)
Q Consensus 513 ~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~-------------------g~~pd~~~y 573 (856)
. ++++|++++.+.... +....++..+..+|..+... +..--..++
T Consensus 163 ~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~ 226 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLL 226 (906)
T ss_pred h-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHH
Confidence 8 888888888776553 23333444444444444432 222223344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 574 GLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFL 616 (856)
Q Consensus 574 ~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~ 616 (856)
-.|-..|-..++++++..+|+.+.+.. +.|.....-++.+|.
T Consensus 227 ~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 227 EDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 444555566666666666666666543 335555555666555
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.008 Score=65.82 Aligned_cols=209 Identities=11% Similarity=0.065 Sum_probs=129.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-
Q 003028 403 HSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAG-FLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGH- 480 (856)
Q Consensus 403 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g-~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~- 480 (856)
..+...++.++|+.++.++.+.. +-+..+|+..-.++...| ++++++..++++.+.. +-+..+|+..-..+.+.|+
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 33445677888999998888753 334456666666666667 5788999998888764 3355566655444555555
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCh----H
Q 003028 481 -LQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHC---GYL----D 552 (856)
Q Consensus 481 -~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~---g~~----~ 552 (856)
.+++..+++.+.+...+ |..+|+...-++...|+++++++.++++.+.... |...|+.....+.+. |.. +
T Consensus 123 ~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 36778888888766443 7788888888888888899999999988877543 344555554444433 222 3
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 553 EAEAVFAEMRRKNWVPDEPVYGLLVDLWGKA----GNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR 617 (856)
Q Consensus 553 ~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~----g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~ 617 (856)
+.......+.... +-+...|+-+...+... +...+|..++.+....+ ..+......|++.|+.
T Consensus 201 ~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 4444444444433 23455566666555552 23345666666655432 2345555666666654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0013 Score=68.70 Aligned_cols=184 Identities=10% Similarity=0.041 Sum_probs=119.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPN-V---VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDR--VT 432 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd-~---~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~--~t 432 (856)
....+-.+...+.+.|+++.|...|+++... .|+ . ..+..+..+|.+.|++++|...|+++.+..-.... .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4556777788888899999999999988764 233 2 45677788888899999999999998765311111 13
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003028 433 YCTLIDIHAKA--------GFLDVAMDMYKKMQAAGLSPD-TFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTY 503 (856)
Q Consensus 433 y~~Ll~~~~k~--------g~~~~A~~l~~~m~~~g~~pd-~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty 503 (856)
+..+..++.+. |++++|.+.|+.+.... |+ ...+..+..... .. ..+. ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~------~~~~--------~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LR------NRLA--------GKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HH------HHHH--------HHH
Confidence 44444555544 67888888888887652 33 222222211100 00 0000 011
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003028 504 NIMIALQAKARNYQSALKLYRDMQNAGF-EP-DKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK 564 (856)
Q Consensus 504 ~~Li~~~~~~g~~~~A~~ll~~M~~~gi-~p-d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~ 564 (856)
..+...|.+.|++++|+..|....+... .| ....+..+..++...|+.++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455678888888888888888876532 12 2457778888888888888888888877654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.018 Score=61.08 Aligned_cols=191 Identities=14% Similarity=0.074 Sum_probs=107.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003028 437 IDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNY 516 (856)
Q Consensus 437 l~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~ 516 (856)
+..+...|+...|+.+...+++. .+-|...|..-..+|...|++..|..=++...+.... +..++--+-..+...|+.
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhH
Confidence 34455567888888888888776 3457777777788888888888777655555443222 555566666777778888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHH-------------HHHHHhcCChHHHHHHHHHHHHcCCCCCH---hhHHHHHHHH
Q 003028 517 QSALKLYRDMQNAGFEPDKVTYSIV-------------MEVLGHCGYLDEAEAVFAEMRRKNWVPDE---PVYGLLVDLW 580 (856)
Q Consensus 517 ~~A~~ll~~M~~~gi~pd~~ty~~l-------------l~a~~~~g~~~~A~~l~~~m~~~g~~pd~---~~y~~Li~~~ 580 (856)
+.++...++-.+. .||....-.. +......+++.++.+-.+...+....... ..+..+-.+|
T Consensus 240 ~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 240 ENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc
Confidence 8887777776653 4553321111 11122234444444444444433221111 1223334444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 581 GKAGNVRKAWEWYEAMLQAGLRPN-VPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 581 ~k~g~~~~A~~l~~~m~~~g~~pd-~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
...+++.+|.+...+..+. .|+ +.++---..+|.-..++++|+.=|+...+
T Consensus 318 ~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 5555666666666555542 233 55555555666666666666666665554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0015 Score=68.32 Aligned_cols=186 Identities=13% Similarity=0.021 Sum_probs=130.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-HHH
Q 003028 393 PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDR---VTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLS-PD-TFT 467 (856)
Q Consensus 393 pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~---~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~-pd-~~t 467 (856)
.....+-.+...+.+.|++++|...|+++.... +.+. .++..+..++.+.|++++|...++++.+.... +. ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 356677888888999999999999999987653 2222 46777888999999999999999999876321 11 124
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003028 468 YSVIINCLGKA--------GHLQAAHQLFCEMVNQGCIPNL-VTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTY 538 (856)
Q Consensus 468 y~~Li~~y~k~--------g~~~~A~~lf~~m~~~g~~pd~-~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty 538 (856)
+..+..++... |+.++|.+.|+.+.... |+. ..+..+..... ... .+. ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~~--------~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RLA--------GKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HHH--------HHH
Confidence 44455555544 77889999999888752 332 23322221111 000 000 011
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 539 SIVMEVLGHCGYLDEAEAVFAEMRRKNW--VPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA 599 (856)
Q Consensus 539 ~~ll~a~~~~g~~~~A~~l~~~m~~~g~--~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~ 599 (856)
..+...+.+.|++++|...+....+... ......+..+..++.+.|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455678899999999999999987532 224578899999999999999999999998764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.038 Score=65.86 Aligned_cols=293 Identities=12% Similarity=0.079 Sum_probs=207.7
Q ss_pred CCCHHHHHHHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 324 SMDAYQANQVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIH 403 (856)
Q Consensus 324 ~~~~~~~~~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~ 403 (856)
......++.++...+..+.|.++-+... .+..|..+..+-.+.|.+.+|.+-|- + ..|+..|.-+|.
T Consensus 1075 ~~n~~A~~VLie~i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAieSyi--k----adDps~y~eVi~ 1141 (1666)
T KOG0985|consen 1075 DMNVSAIQVLIENIGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAIESYI--K----ADDPSNYLEVID 1141 (1666)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHHHHHH--h----cCCcHHHHHHHH
Confidence 3445556667777777888887776654 34589999999999999999988763 2 247888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003028 404 SYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQA 483 (856)
Q Consensus 404 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~ 483 (856)
...+.|.+++-.+++...++..-+|.+. ..||-+|++.+++.+.++++ ..||..-...+-+-|...|.++.
T Consensus 1142 ~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~a 1212 (1666)
T KOG0985|consen 1142 VASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEA 1212 (1666)
T ss_pred HHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHH
Confidence 9999999999999998887776666655 46888999999988866654 24788888888888999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003028 484 AHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 484 A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~ 563 (856)
|.-+|... .-|..|...+...|++..|.+.-++.. +..||-.+-.+|...+.+..| +|..
T Consensus 1213 Akl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCG 1272 (1666)
T KOG0985|consen 1213 AKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICG 1272 (1666)
T ss_pred HHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcC
Confidence 88777654 448888899999999998887665543 456888888888766555433 3443
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003028 564 KNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTY 643 (856)
Q Consensus 564 ~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty 643 (856)
.++.....-..-|+..|-..|-+++...+++.-.... .-....|+.|.--|.+- ++++..+.++..-. ....
T Consensus 1273 L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFws------RvNi 1344 (1666)
T KOG0985|consen 1273 LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWS------RVNI 1344 (1666)
T ss_pred ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH------hcch
Confidence 3444556667788888999999998888887654211 22445566666666654 34444444433322 1222
Q ss_pred HHHHHHHHhcCCcchHHHHHHHH
Q 003028 644 TLLLSCCTEARSPYDMGFCHELM 666 (856)
Q Consensus 644 ~~Ll~a~~~~g~~~~a~~l~~~m 666 (856)
--+|++|.+..-|.++..++..-
T Consensus 1345 pKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1345 PKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666666666665555443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.01 Score=67.97 Aligned_cols=167 Identities=21% Similarity=0.247 Sum_probs=82.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003028 437 IDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNY 516 (856)
Q Consensus 437 l~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~ 516 (856)
+.+......|.+|+.+++.+..... -..-|..+.+.|...|+++.|+++|-+-- .++--|.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3444455666666666666654422 22334555566666666666666664321 234455666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 517 QSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAM 596 (856)
Q Consensus 517 ~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m 596 (856)
++|.++-.+.. |.......|..-..-+-..|++.+|++++-.+. .|+ ..|.+|-+.|..+...++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 66665544332 333334445444444555566666665553221 122 2345555555555555554433
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003028 597 LQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLL 628 (856)
Q Consensus 597 ~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~ 628 (856)
... .-..|...+..-|-..|++..|.+.|
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHH
Confidence 210 01123333444444445555444444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0069 Score=62.32 Aligned_cols=234 Identities=12% Similarity=0.171 Sum_probs=133.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH-HHH
Q 003028 408 ANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQA-AHQ 486 (856)
Q Consensus 408 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~-A~~ 486 (856)
.|.+..++..-...... +-+...-..+-.+|...|.+.... .+.+.. -.|.......+......-+..+. ..+
T Consensus 21 ~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~-~~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEG-KATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred hhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---cccccc-cCChHHHHHHHHHHhhCcchhHHHHHH
Confidence 45555555544433321 133334444455566666544322 222222 13333333333333333333333 233
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003028 487 LFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNW 566 (856)
Q Consensus 487 lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~ 566 (856)
+.+.+......-+......-...|++.|++++|++.++... +......=...+.+..+++-|++.++.|.+..
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 34444443333233333333456778888888888776622 22223333344556677888888888887643
Q ss_pred CCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003028 567 VPDEPVYGLLVDLWGK----AGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQT 642 (856)
Q Consensus 567 ~pd~~~y~~Li~~~~k----~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~t 642 (856)
+..+.+-|..+|.+ .+.+..|.-+|++|.++ ..|+..+.|.+..++...|++++|..++++.+... .-+..|
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpet 243 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPET 243 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHH
Confidence 45566656665553 45688899999998864 57888889999999999999999999999888754 334566
Q ss_pred HHHHHHHHHhcCCcch
Q 003028 643 YTLLLSCCTEARSPYD 658 (856)
Q Consensus 643 y~~Ll~a~~~~g~~~~ 658 (856)
...++-+-...|...+
T Consensus 244 L~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHHHHhCCChH
Confidence 6666665555665433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.043 Score=61.67 Aligned_cols=410 Identities=11% Similarity=0.116 Sum_probs=230.1
Q ss_pred CCCHHHHHHHHHhh--hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003028 324 SMDAYQANQVLKQL--QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRL 401 (856)
Q Consensus 324 ~~~~~~~~~vL~~l--~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~L 401 (856)
.-|...|..+++.+ +.++++.++++.+.... ......|..-|..-.+..+++..+.+|.+.... ..++..|...
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 45788999999877 46789999999998644 345568999999999999999999999998764 3578889888
Q ss_pred HHHHHhc-CCHHH----HHHHHHH-HHHcCCCCCH-HHHHHHHHHH---------HHcCCHHHHHHHHHHHHHCCCCCCH
Q 003028 402 IHSYGRA-NYLNE----ALDVFKQ-MQVVGCEPDR-VTYCTLIDIH---------AKAGFLDVAMDMYKKMQAAGLSPDT 465 (856)
Q Consensus 402 i~~~~~~-g~~~~----A~~lf~~-m~~~g~~pd~-~ty~~Ll~~~---------~k~g~~~~A~~l~~~m~~~g~~pd~ 465 (856)
|..-.+. ++... -.+.|+- |.+.|+.+-. ..|+..+..+ ....+++...++|++++..-+.-=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 8765443 22222 2223332 3344543322 2355554432 3334677778888888764222112
Q ss_pred HHHH------HHHHHH-------HccCCHHHHHHHHHHHHH--cCCCCCHHH---------------HHHHHHHHHHcCC
Q 003028 466 FTYS------VIINCL-------GKAGHLQAAHQLFCEMVN--QGCIPNLVT---------------YNIMIALQAKARN 515 (856)
Q Consensus 466 ~ty~------~Li~~y-------~k~g~~~~A~~lf~~m~~--~g~~pd~~t---------------y~~Li~~~~~~g~ 515 (856)
..|+ .=|+.. -+...+..|.++++++.. .|......+ |-.+|.-=-.++.
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 2222 112211 123346667777776653 243332222 3333332211111
Q ss_pred H--------HHHHHHHHH-HHHcCCCCCHH-HHHHHHHHHHh----cCC-------hHHHHHHHHHHHHcCCCCCHhhHH
Q 003028 516 Y--------QSALKLYRD-MQNAGFEPDKV-TYSIVMEVLGH----CGY-------LDEAEAVFAEMRRKNWVPDEPVYG 574 (856)
Q Consensus 516 ~--------~~A~~ll~~-M~~~gi~pd~~-ty~~ll~a~~~----~g~-------~~~A~~l~~~m~~~g~~pd~~~y~ 574 (856)
- ....-.+++ |.-.+..|+.. -|...+..-++ .|+ -+++..+++.....-..-+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 011111221 12223333321 11122222111 111 344444554444322222333344
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 003028 575 LLVDLWGKAG---NVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKP-SLQTYTLLLSCC 650 (856)
Q Consensus 575 ~Li~~~~k~g---~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~P-d~~ty~~Ll~a~ 650 (856)
.+.+---..- ..+....++++++..-..--..+|-.+|..-.+..-++.|..+|.+..+.+..+ +...+.++|.-+
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 3333211111 245566666666643222233457778888888888999999999999988777 667777777765
Q ss_pred HhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHHHhCCChhH
Q 003028 651 TEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDR--ESKRGLVDAVVDFLHKSGLKEE 728 (856)
Q Consensus 651 ~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~--~~~~~~~~aLi~~y~k~G~~ee 728 (856)
| .++.+-|..+++.-.+.-.+...+....+.- ...-+...-+..+|+.+..... .-...+|+.+++.=..-|++..
T Consensus 413 c-skD~~~AfrIFeLGLkkf~d~p~yv~~Yldf-L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKFGDSPEYVLKYLDF-LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHhcCCChHHHHHHHHH-HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 5 4556788888887666544443333321110 0011234556777777766533 3345789999999999999999
Q ss_pred HHHHHHHHHhC
Q 003028 729 AGSVWEVAAQK 739 (856)
Q Consensus 729 A~~lf~~m~~~ 739 (856)
+.++-+++...
T Consensus 491 i~~lekR~~~a 501 (656)
T KOG1914|consen 491 ILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHh
Confidence 99998887654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0061 Score=63.34 Aligned_cols=290 Identities=15% Similarity=0.116 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHH
Q 003028 361 HTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTL-IDI 439 (856)
Q Consensus 361 ~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~L-l~~ 439 (856)
.-+.+.+..+.+..++++|.+++....++. +.+......|..+|-...++..|-+.++++-.. .|...-|... ...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 346778888899999999999998888763 237788899999999999999999999999764 4665555433 566
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINC--LGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQ 517 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~--y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~ 517 (856)
+.+.+.+..|+.+...|... ++...-..-+.+ ....+++..+..+++++... -+..+.+...-...+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHH
Confidence 77889999999999888653 232222222222 34567888888888887643 25556666666677999999
Q ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-------------CH-------------
Q 003028 518 SALKLYRDMQNA-GFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVP-------------DE------------- 570 (856)
Q Consensus 518 ~A~~ll~~M~~~-gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~p-------------d~------------- 570 (856)
+|.+-|+...+. |..|- ..|+..+.-| +.++++.|.+...++.++|++- |+
T Consensus 162 aAvqkFqaAlqvsGyqpl-lAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPL-LAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHhhcCCCch-hHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 999999987765 55554 5787666544 6789999999999999987642 11
Q ss_pred --hhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 571 --PVYGLLVDLWGKAGNVRKAWEWYEAMLQ-AGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLL 647 (856)
Q Consensus 571 --~~y~~Li~~~~k~g~~~~A~~l~~~m~~-~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll 647 (856)
..+|.-...+-+.++++.|.+.+-.|.- ..-..|++|...+.-.-. .+++-+..+-++-+++..-. ...||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf-P~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF-PPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC-ChHHHHHHH
Confidence 1122223345567888888888887762 223456676655543322 34455555555556654332 347888888
Q ss_pred HHHHhcCCcchHHHHH
Q 003028 648 SCCTEARSPYDMGFCH 663 (856)
Q Consensus 648 ~a~~~~g~~~~a~~l~ 663 (856)
-.||+..-++-|..++
T Consensus 318 llyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVL 333 (459)
T ss_pred HHHhhhHHHhHHHHHH
Confidence 8888877666555544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0056 Score=74.49 Aligned_cols=240 Identities=10% Similarity=0.109 Sum_probs=139.7
Q ss_pred HHHHHHHHHhccCCchHHHHHhhcCCCCCH-HHHHHHHHhh---hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003028 298 VESVSRILRQWKWGPLAEEALGNTNYSMDA-YQANQVLKQL---QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRA 373 (856)
Q Consensus 298 ~~~i~~iL~~~~~~~~~~~~l~~~~~~~~~-~~~~~vL~~l---~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~ 373 (856)
.+.+..+|.+-.|... .-.+..|+- ..+..++..+ ++++.|.++.+...+..+-.+.. |-.+...+...
T Consensus 6 ~~~~~~~~~ee~~~r~-----~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~--yy~~G~l~~q~ 78 (906)
T PRK14720 6 IDKLTSLLNEEKWTRA-----DANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA--LYISGILSLSR 78 (906)
T ss_pred HHHHHHHhhhhhhhhc-----ccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh--HHHHHHHHHhh
Confidence 5567777766554321 122344443 4455555544 68999999999766544433333 33333367777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003028 374 RQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMY 453 (856)
Q Consensus 374 g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~ 453 (856)
++.+.+..+ .+ +.......++.-...+.+.|... .-+...+..+..+|-+.|+.+++..+|
T Consensus 79 ~~~~~~~lv--~~---------------l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~y 139 (906)
T PRK14720 79 RPLNDSNLL--NL---------------IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVW 139 (906)
T ss_pred cchhhhhhh--hh---------------hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHH
Confidence 776666555 33 23333333443333444444442 233445666666777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 003028 454 KKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNA---- 529 (856)
Q Consensus 454 ~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~---- 529 (856)
+++++.. +-|..+.|-+...|... ++++|.+++...... |...+++.++.++|.++...
T Consensus 140 er~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d 202 (906)
T PRK14720 140 ERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDD 202 (906)
T ss_pred HHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCccc
Confidence 7776665 34666666676667666 777776666665442 23333333444433333322
Q ss_pred ---------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 003028 530 ---------------GFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWG 581 (856)
Q Consensus 530 ---------------gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~ 581 (856)
|..--..++..+-..|-..++++++..+++.+.+.... |.....-|+..|.
T Consensus 203 ~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 203 FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred chHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 22223445556667788889999999999999986533 5566677777765
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.13 Score=58.10 Aligned_cols=441 Identities=10% Similarity=0.074 Sum_probs=208.5
Q ss_pred hhcCCchHHHHHHHHHhccCCchH--HHHHh-hcCCCCC-HHHHHHHHHh---hhChhHHHHHHHHHHHhCCCCCCHHHH
Q 003028 291 FASTGNVVESVSRILRQWKWGPLA--EEALG-NTNYSMD-AYQANQVLKQ---LQDHTVALGFFNWLRRQAGFKHDEHTY 363 (856)
Q Consensus 291 ~~~~~~~~~~i~~iL~~~~~~~~~--~~~l~-~~~~~~~-~~~~~~vL~~---l~~~~~Al~~f~~m~~~~g~~pd~~~y 363 (856)
.-.+..+++.-..++++....|.. ..... -.+..|. +..|..-++. .++++....+|...... ..+...|
T Consensus 13 ie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk---vLnlDLW 89 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK---VLNLDLW 89 (656)
T ss_pred HhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HhhHhHH
Confidence 334445677777777766544221 11111 1233333 3333333332 26788888889887642 2356688
Q ss_pred HHHHHHHHhc-CCHHH----HHHHHHHH-HHcCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHcCCC
Q 003028 364 TTMVGILGRA-RQFGA----INKLLDQM-VRDGCQP-NVVTYNRLIHS---------YGRANYLNEALDVFKQMQVVGCE 427 (856)
Q Consensus 364 ~~Li~~~~k~-g~~~~----A~~lf~~m-~~~g~~p-d~~ty~~Li~~---------~~~~g~~~~A~~lf~~m~~~g~~ 427 (856)
...|+...+. ++... ..+.|+-. .+.|+.+ .-..|+..|.. |..+.+++...++|+++...-+.
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc
Confidence 8888776554 22222 23334433 3445433 33456666654 34455777888888888753221
Q ss_pred CCHHHHHHHHHH------H-------HHcCCHHHHHHHHHHHHH--CCCCCCHHH---------------HHHHHHHHHc
Q 003028 428 PDRVTYCTLIDI------H-------AKAGFLDVAMDMYKKMQA--AGLSPDTFT---------------YSVIINCLGK 477 (856)
Q Consensus 428 pd~~ty~~Ll~~------~-------~k~g~~~~A~~l~~~m~~--~g~~pd~~t---------------y~~Li~~y~k 477 (856)
-=...|+-...- . -+...+..|..+++++.. .|+.....+ |..+|.- -+
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-Ek 248 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EK 248 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-Hh
Confidence 112334322110 0 122356677777777654 243222221 2222221 11
Q ss_pred cCCHH---------HHHHHHHH-HHHcCCCCCHHHHH-HH----HHHHHHcCC-------HHHHHHHHHHHHHcCCCCCH
Q 003028 478 AGHLQ---------AAHQLFCE-MVNQGCIPNLVTYN-IM----IALQAKARN-------YQSALKLYRDMQNAGFEPDK 535 (856)
Q Consensus 478 ~g~~~---------~A~~lf~~-m~~~g~~pd~~ty~-~L----i~~~~~~g~-------~~~A~~ll~~M~~~gi~pd~ 535 (856)
.+-++ ...-++++ |.--+..|++.-.. .. -+.+...|+ -+++..+++...+.-..-+.
T Consensus 249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~ 328 (656)
T KOG1914|consen 249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK 328 (656)
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 11000 01111111 11112222221100 00 112222333 24445555544332222233
Q ss_pred HHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 003028 536 VTYSIVMEVLGHC---GYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRP-NVPTCNSL 611 (856)
Q Consensus 536 ~ty~~ll~a~~~~---g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~p-d~~t~n~L 611 (856)
.+|..+...--.. ...+....+++++......--..+|..+|+..-+..-+..|..+|.+..+.+..+ ++..++++
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 3333333211111 1244444555555543222223457777777777777888888888887766656 67777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHH---HHhcCCCCCCc
Q 003028 612 LSAFLRVGQLSDAYHLLQGMLNLGLKPSL-QTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMF---LLSMPSPGPDG 687 (856)
Q Consensus 612 i~ay~~~g~~e~A~~l~~~M~~~g~~Pd~-~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~---~~~l~~~~~~~ 687 (856)
|.-||. ++.+-|.++|+.-++. .+|. .--...++-+...++-..+..+++.....+.+++.. +.+++..-..-
T Consensus 409 mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~v 485 (656)
T KOG1914|consen 409 MEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNV 485 (656)
T ss_pred HHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhc
Confidence 777764 5677788888765542 2333 333455566667777777777887777775543321 11211110000
Q ss_pred ccHHHHHHHHHHHHhc-CC--CCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 003028 688 QNVRDHVGSFLEMMHS-ED--RESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQK 739 (856)
Q Consensus 688 ~~~~~~a~~l~~~~~~-~~--~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~ 739 (856)
+....+..+.+.... .. .++.-..-..+++.|.-.+....-..=++.|-.+
T Consensus 486 -GdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l~~~ 539 (656)
T KOG1914|consen 486 -GDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFLGYK 539 (656)
T ss_pred -ccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhhhHH
Confidence 112222222222111 11 2222234457777887777766666556655443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.004 Score=64.07 Aligned_cols=159 Identities=11% Similarity=0.044 Sum_probs=104.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003028 364 TTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKA 443 (856)
Q Consensus 364 ~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~ 443 (856)
..+-..+.-.|+-+....+....... ...|....+.++....+.|++.+|+..|++..... ++|..+|+.+--+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44445555566666666655554332 12355556667777777777777777777776654 66777777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003028 444 GFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLY 523 (856)
Q Consensus 444 g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll 523 (856)
|+.++|..-|.+..+.- .-+...+|.|.-.|.-.|+++.|..++......+.. |...-..|.......|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777777776652 234566666766777777777777777776655332 5556666666777777777777666
Q ss_pred HHH
Q 003028 524 RDM 526 (856)
Q Consensus 524 ~~M 526 (856)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.013 Score=60.46 Aligned_cols=173 Identities=14% Similarity=0.121 Sum_probs=110.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003028 450 MDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNA 529 (856)
Q Consensus 450 ~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 529 (856)
.++.+.+.......+......-...|+..|++++|++..+... +......=+..+.+..+++-|.+.+++|.+.
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3445555544444443444444566888888888888877632 3333333345556777788888888888764
Q ss_pred CCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003028 530 GFEPDKVTYSIVMEVLGHC----GYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNV 605 (856)
Q Consensus 530 gi~pd~~ty~~ll~a~~~~----g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~ 605 (856)
. +..|.+.|..++.+. +.+.+|.-+|++|-+ ...|+..+.+-...++...|++++|..++++..++. ..++
T Consensus 167 d---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dp 241 (299)
T KOG3081|consen 167 D---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDP 241 (299)
T ss_pred c---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCH
Confidence 2 455777676666543 567888888888876 356788888888888888888888888888888654 3345
Q ss_pred HHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 003028 606 PTCNSLLSAFLRVGQLSD-AYHLLQGMLN 633 (856)
Q Consensus 606 ~t~n~Li~ay~~~g~~e~-A~~l~~~M~~ 633 (856)
.+...+|..-...|...+ -.+.+.+...
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 554444444444444333 3344444443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0059 Score=73.50 Aligned_cols=148 Identities=9% Similarity=0.025 Sum_probs=122.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003028 355 GFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQP-NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTY 433 (856)
Q Consensus 355 g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty 433 (856)
.+..++..+-.|..+....|.+++|+.+++...+. .| +...+..+...+.+.+++++|+..+++..... +-+....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~ 157 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREI 157 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHH
Confidence 35567889999999999999999999999999985 45 45677788899999999999999999998864 4456677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 434 CTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMI 507 (856)
Q Consensus 434 ~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li 507 (856)
+.+..++.+.|++++|..+|+++...+ +-+..++..+-..+-+.|+.++|...|+...+.- .+....|+.++
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 778888899999999999999999843 3458899999999999999999999999987652 23445555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.26 Score=58.72 Aligned_cols=221 Identities=12% Similarity=0.095 Sum_probs=97.2
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003028 339 DHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVF 418 (856)
Q Consensus 339 ~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf 418 (856)
++..|+.-...+.++++..+-..++.+++ +.+.|+.++|..+++.....+.. |..|...+-.+|.+.++.++|..+|
T Consensus 24 qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34455555555555443332222222222 23555666666555555443322 5555666666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----------CHHHHHHHH
Q 003028 419 KQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAG----------HLQAAHQLF 488 (856)
Q Consensus 419 ~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g----------~~~~A~~lf 488 (856)
++.... -|+..-...+..+|.+.+.+.+-.+.--+|.+. ++-+.+.+=+++..+...- -+.-|.+.+
T Consensus 101 e~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 101 ERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 665533 344555555555555555544433333333221 2223333333333332211 122344444
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003028 489 CEMVNQG-CIPNLVTYNIMIALQAKARNYQSALKLYR-DMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN 565 (856)
Q Consensus 489 ~~m~~~g-~~pd~~ty~~Li~~~~~~g~~~~A~~ll~-~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g 565 (856)
+.+.+.+ ..-+..-...-...+-..|++++|++++. ..-+.-..-+...-+.-++.+...+++.+..++-.++...+
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 4444432 11111111112223334555666666553 22222222222233344444555555555555555555544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.01 Score=67.15 Aligned_cols=221 Identities=12% Similarity=0.102 Sum_probs=125.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 369 ILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDV 448 (856)
Q Consensus 369 ~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~ 448 (856)
-+.+.|++.+|.-+|+..++.. +-+...|-.|-.....+++-..|+..+++..+.. +-+....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3456777777777777776652 2356677777777777777777777777776653 3455666666667777777777
Q ss_pred HHHHHHHHHHCCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003028 449 AMDMYKKMQAAGLS--------PDTFTYSVIINCLGKAGHLQAAHQLFCEMVN-QGCIPNLVTYNIMIALQAKARNYQSA 519 (856)
Q Consensus 449 A~~l~~~m~~~g~~--------pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~-~g~~pd~~ty~~Li~~~~~~g~~~~A 519 (856)
|+++++.-+....+ ++...-+. ..+.....+....++|-++.. .+..+|...+..|--.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 77777666543210 00000000 112222233444444444432 33335566666666666666677777
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 520 LKLYRDMQNAGFEP-DKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPD-EPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 520 ~~ll~~M~~~gi~p-d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd-~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
.+.|+..+.. .| |..+||-|-..++...+.++|...|.+.++.. |. +.+...|.-.|...|.+++|.+.|-..+
T Consensus 450 iDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 7777666553 33 34566666666666666666666666666532 22 2222333444566666666666554443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0058 Score=62.25 Aligned_cols=120 Identities=9% Similarity=0.134 Sum_probs=82.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCC--HHHH
Q 003028 408 ANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINC-LGKAGH--LQAA 484 (856)
Q Consensus 408 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~-y~k~g~--~~~A 484 (856)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.. +-+...+..+..+ |...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 555666766676666554 5667777777777777788888888777777753 3356666666665 356565 4777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003028 485 HQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAG 530 (856)
Q Consensus 485 ~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g 530 (856)
.+++++..+.... +...+..+...+.+.|++++|+..|+++.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7777777766433 66677777777777777777777777776653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.04 Score=61.96 Aligned_cols=330 Identities=12% Similarity=0.066 Sum_probs=200.2
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPN-VVTYNRLIHSYGRANYLNEALD 416 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd-~~ty~~Li~~~~~~g~~~~A~~ 416 (856)
++++.|...|-..... -++|.+.|..-..+|.+.|++++|.+=-.+-.+ +.|+ ..-|+.+-.++.-.|++++|+.
T Consensus 16 ~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 6889999999887642 234777899999999999999998776655554 3455 4578888888888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHH----------ccCC
Q 003028 417 VFKQMQVVGCEPDRVTYCTLIDIHAKAG---FLDVAMDMYKKMQAA---GLSPDTFTYSVIINCLG----------KAGH 480 (856)
Q Consensus 417 lf~~m~~~g~~pd~~ty~~Ll~~~~k~g---~~~~A~~l~~~m~~~---g~~pd~~ty~~Li~~y~----------k~g~ 480 (856)
.|.+-.+.. +.+...++-+..++.... +.-.--.++..+... ........|..++..+- .-.+
T Consensus 92 ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r 170 (539)
T KOG0548|consen 92 AYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPR 170 (539)
T ss_pred HHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHH
Confidence 999887764 556677777777772110 000001111111110 00011122333332221 1111
Q ss_pred HHHHHHHHHHH-----HHcC-------CCC----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 481 LQAAHQLFCEM-----VNQG-------CIP----------------------NLVTYNIMIALQAKARNYQSALKLYRDM 526 (856)
Q Consensus 481 ~~~A~~lf~~m-----~~~g-------~~p----------------------d~~ty~~Li~~~~~~g~~~~A~~ll~~M 526 (856)
+..|.-.+... ...+ ..| -..-+..+..+..+..+++.|++-+...
T Consensus 171 ~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a 250 (539)
T KOG0548|consen 171 LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA 250 (539)
T ss_pred HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 11121111110 0000 011 0112445667777888888888888887
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHH-------HHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 527 QNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGL-------LVDLWGKAGNVRKAWEWYEAMLQA 599 (856)
Q Consensus 527 ~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~-------Li~~~~k~g~~~~A~~l~~~m~~~ 599 (856)
.+.. -+..-++....+|...|.+.+.........+.|.. ...-|+. +-.+|.+.++++.|..+|++....
T Consensus 251 ~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte 327 (539)
T KOG0548|consen 251 LELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE 327 (539)
T ss_pred HhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh
Confidence 7654 34445556666788888877777766665555432 1122222 334666678888888888876654
Q ss_pred CCCCCHHH-------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003028 600 GLRPNVPT-------------------------CNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEAR 654 (856)
Q Consensus 600 g~~pd~~t-------------------------~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g 654 (856)
...|+... -..-...+.+.|++..|+..|.+++... .-|...|..---+|.+.+
T Consensus 328 ~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~ 406 (539)
T KOG0548|consen 328 HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLG 406 (539)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHh
Confidence 33333221 1112455678999999999999999865 445577888878889999
Q ss_pred CcchHHHHHHHHHHcCCChHHH
Q 003028 655 SPYDMGFCHELMAVSGHPAHMF 676 (856)
Q Consensus 655 ~~~~a~~l~~~m~~~g~~~~~~ 676 (856)
.+..+..-.+.-.+..++....
T Consensus 407 ~~~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 407 EYPEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred hHHHHHHHHHHHHhcCchHHHH
Confidence 9888887777777766654433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.63 E-value=8.7e-05 Score=52.07 Aligned_cols=33 Identities=30% Similarity=0.671 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003028 607 TCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS 639 (856)
Q Consensus 607 t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd 639 (856)
+||.||.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888876
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0058 Score=69.02 Aligned_cols=215 Identities=15% Similarity=0.074 Sum_probs=161.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQS 518 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~ 518 (856)
-+.+.|++.+|.-.|+..+... +-+...|.-|-..-...++-..|+.-+.+..+.... |....-+|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3568899999999999988874 347788888888888888888899888888876433 67788888889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH-----------HHHhcCChHHHHHHHHHHH-HcCCCCCHhhHHHHHHHHHhcCCH
Q 003028 519 ALKLYRDMQNAGFEPDKVTYSIVME-----------VLGHCGYLDEAEAVFAEMR-RKNWVPDEPVYGLLVDLWGKAGNV 586 (856)
Q Consensus 519 A~~ll~~M~~~gi~pd~~ty~~ll~-----------a~~~~g~~~~A~~l~~~m~-~~g~~pd~~~y~~Li~~~~k~g~~ 586 (856)
|+++|+.-.....+ |..+.. .+.....+....++|-++. ..+..+|..++..|--.|--.|++
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999988765321 111211 1111122344455555544 445557888899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcchHHHHH
Q 003028 587 RKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQ-TYTLLLSCCTEARSPYDMGFCH 663 (856)
Q Consensus 587 ~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~-ty~~Ll~a~~~~g~~~~a~~l~ 663 (856)
++|...|+..+... +-|..+||.|...++...+.++|+..|++.++ ++|+.+ ...-|--+|...|.+++|...+
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 99999999998742 44678999999999999999999999999997 788863 3344444678888887776543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0076 Score=61.37 Aligned_cols=118 Identities=16% Similarity=0.182 Sum_probs=65.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH-HHhcCC--HHHH
Q 003028 513 ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDL-WGKAGN--VRKA 589 (856)
Q Consensus 513 ~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~-~~k~g~--~~~A 589 (856)
.++.++++..++...... +.|...|..+...|...|++++|...|+...+... -+...+..+..+ |...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344455555555444432 23445555555566666666666666666555432 244555555554 244454 3666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 590 WEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 590 ~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.+++++..+.. +-+...+..+...+.+.|++++|+..|+++++
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666542 23555666666666666666666666666665
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.018 Score=69.39 Aligned_cols=148 Identities=9% Similarity=-0.009 Sum_probs=107.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003028 391 CQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSV 470 (856)
Q Consensus 391 ~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~ 470 (856)
...++..+-.|.....+.|.+++|+.+++...+.. +-+......+...+.+.+++++|+..+++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 34467778888888888888888888888887653 3345566777788888888888888888888763 335666677
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 471 IINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVM 542 (856)
Q Consensus 471 Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll 542 (856)
+..++.+.|++++|..+|+++...+. -+..++..+...+...|+.++|...|+...+.. .+....|+..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 77788888888888888888886322 246778888888888888888888888876642 23344454443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.31 Score=57.27 Aligned_cols=375 Identities=13% Similarity=0.043 Sum_probs=239.5
Q ss_pred CCHHHHHHH---HHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003028 325 MDAYQANQV---LKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRL 401 (856)
Q Consensus 325 ~~~~~~~~v---L~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~L 401 (856)
-+...+..+ +...+++..+-+.|+.... +.--....|+.+--.|..+|.-..|..+++.-....-.|+..+--.+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 344444443 3455788888888988763 33345667888988999999988899988876653222433333223
Q ss_pred H-HHH-HhcCCHHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCCC-CC
Q 003028 402 I-HSY-GRANYLNEALDVFKQMQVV--GC--EPDRVTYCTLIDIHAKA-----------GFLDVAMDMYKKMQAAGL-SP 463 (856)
Q Consensus 402 i-~~~-~~~g~~~~A~~lf~~m~~~--g~--~pd~~ty~~Ll~~~~k~-----------g~~~~A~~l~~~m~~~g~-~p 463 (856)
+ ..| -+-+.+++++++..+.... +. ......|..+--+|... ....++++.+++..+.+. .|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 3 323 3446778888877776551 11 12234444444444322 235678888888877643 33
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCC----------
Q 003028 464 DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQN-AGFE---------- 532 (856)
Q Consensus 464 d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~-~gi~---------- 532 (856)
++..| +---|+..++++.|.+...+..+.+-.-+...|..|.-.+.-.+++.+|+.+.+...+ .|..
T Consensus 479 ~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred hHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 33333 3334677788899998888888876566888888888888888888888888875543 2210
Q ss_pred --------CCHHHHHHHHHHHHh---------c--------------CChHHHHHHHHHH----H----HcC--------
Q 003028 533 --------PDKVTYSIVMEVLGH---------C--------------GYLDEAEAVFAEM----R----RKN-------- 565 (856)
Q Consensus 533 --------pd~~ty~~ll~a~~~---------~--------------g~~~~A~~l~~~m----~----~~g-------- 565 (856)
--..|...++..+-. . ++..++......+ . ..+
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 001222222222220 0 0111111111111 0 001
Q ss_pred -CC--CC------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003028 566 -WV--PD------EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGL 636 (856)
Q Consensus 566 -~~--pd------~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~ 636 (856)
.. |+ ...|....+.+.+.+..++|...+.+.... .+.....|......+...|+.++|.+.|...+. +
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--l 713 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--L 713 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--c
Confidence 11 22 335667778889999999999888877654 345667788888888999999999999999886 6
Q ss_pred CCCH-HHHHHHHHHHHhcCCcchHHH--HHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCC
Q 003028 637 KPSL-QTYTLLLSCCTEARSPYDMGF--CHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDR 706 (856)
Q Consensus 637 ~Pd~-~ty~~Ll~a~~~~g~~~~a~~--l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~ 706 (856)
.|+. ...+++-..+.+.|+..-+.. ++..+.+.++..|..++.++......++..+++..+.-.++....
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 6776 566777778889998877777 899999999999999988877666556666666655555554433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00011 Score=51.57 Aligned_cols=33 Identities=48% Similarity=0.744 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD 429 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd 429 (856)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455666666666666666666666655555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.011 Score=60.80 Aligned_cols=153 Identities=12% Similarity=0.055 Sum_probs=65.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 003028 472 INCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYL 551 (856)
Q Consensus 472 i~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~ 551 (856)
-..+...|+-+....+........ ..|....+.++....+.|++.+|+..|++..... ++|..+|+.+--+|-+.|+.
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccCh
Confidence 334444444444444443332211 1133333334444444555555555554444321 33444444444445555555
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003028 552 DEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLL 628 (856)
Q Consensus 552 ~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~ 628 (856)
++|..-|.+..+-.. -+...+|.|.-.|.-.|+.+.|..++......+ .-|...-..+.......|++++|..+-
T Consensus 151 ~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 151 DEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 555554444444321 123334444444444455555555544444332 113333444444444455555554443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.18 Score=53.75 Aligned_cols=349 Identities=13% Similarity=0.068 Sum_probs=215.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLI---HSYGRANYLNEALDVFKQMQVVGCEPDRVTYC-TLID 438 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li---~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~-~Ll~ 438 (856)
.--+-..+...|++..|+.-|...++ .|+..|.++. ..|...|+-.-|+.=|.+..+. +||-..-. ---.
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 33445555556666666666655554 2333344333 3445555555555555555442 44432211 1123
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC--C----------H--HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGLSP--D----------T--FTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYN 504 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~~p--d----------~--~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~ 504 (856)
.+.+.|.++.|..=|+.++.....- . . ......+..+.-.|+...|...+..+.+..+ -|...|.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHH
Confidence 4456666666666666665542110 0 1 1122345567778999999999999987533 2777788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh----hHHHH----
Q 003028 505 IMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEP----VYGLL---- 576 (856)
Q Consensus 505 ~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~----~y~~L---- 576 (856)
.-..+|...|+...|+.=++...+.. .-+..++--+-..+...|+.+.++....+..+.+ ||-. .|..|
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHH
Confidence 88899999999999988777665543 2345566667777888999999999888888643 4432 22222
Q ss_pred -----HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 003028 577 -----VDLWGKAGNVRKAWEWYEAMLQAGLRPN-----VPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS-LQTYTL 645 (856)
Q Consensus 577 -----i~~~~k~g~~~~A~~l~~~m~~~g~~pd-----~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd-~~ty~~ 645 (856)
+......+++.++.+-.+...+.. |. ...+..+-.+|...|++-+|++...+.++ +.|| ..++.-
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~e--p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~d 346 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNE--PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcC--CcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHH
Confidence 122345567777777777776643 33 23345667788889999999999999987 5666 677777
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCC
Q 003028 646 LLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGL 725 (856)
Q Consensus 646 Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~ 725 (856)
-..+|.-...+++|+.-++...+.+......- ...+.+.++.+..... .-|..|+ --+.-.
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r-----------eGle~Akrlkkqs~kR------DYYKILG--VkRnAs 407 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELNESNTRAR-----------EGLERAKRLKKQSGKR------DYYKILG--VKRNAS 407 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH-----------HHHHHHHHHHHHhccc------hHHHHhh--hccccc
Confidence 77788777888888888887777665433221 2345555555444322 2233332 234555
Q ss_pred hhHHHHHHHHHHhCCCCCCc
Q 003028 726 KEEAGSVWEVAAQKNVYPDA 745 (856)
Q Consensus 726 ~eeA~~lf~~m~~~~~~Pd~ 745 (856)
..|-.+.+++|.++ ..||.
T Consensus 408 KqEI~KAYRKlAqk-WHPDN 426 (504)
T KOG0624|consen 408 KQEITKAYRKLAQK-WHPDN 426 (504)
T ss_pred HHHHHHHHHHHHHh-cCCcc
Confidence 67788888888776 44654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0063 Score=58.58 Aligned_cols=91 Identities=11% Similarity=-0.005 Sum_probs=40.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 003028 401 LIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGH 480 (856)
Q Consensus 401 Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~ 480 (856)
+...+.+.|++++|...|+...... +.+...|..+..++.+.|++++|...|+...... +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3344444444444444444444332 2234444444444444444444444444444432 2234444444444444444
Q ss_pred HHHHHHHHHHHHH
Q 003028 481 LQAAHQLFCEMVN 493 (856)
Q Consensus 481 ~~~A~~lf~~m~~ 493 (856)
+++|...|+....
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.056 Score=60.35 Aligned_cols=141 Identities=16% Similarity=0.112 Sum_probs=99.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 003028 472 INCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD-KVTYSIVMEVLGHCGY 550 (856)
Q Consensus 472 i~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd-~~ty~~ll~a~~~~g~ 550 (856)
.-.+...|++++|++.++.+...- +-|..-+......+.+.++..+|.+.++.+... .|+ ......+.+++.+.|+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCC
Confidence 334556677788888888777642 224555556667778888888888888887765 344 4455566777788888
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 551 LDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQG 630 (856)
Q Consensus 551 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~ 630 (856)
..+|..+++...... +-|+..|..|..+|...|+..+|..-..+.. ...|+++.|+..+..
T Consensus 390 ~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~------------------~~~G~~~~A~~~l~~ 450 (484)
T COG4783 390 PQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY------------------ALAGRLEQAIIFLMR 450 (484)
T ss_pred hHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH------------------HhCCCHHHHHHHHHH
Confidence 888888887777643 4577788888888888888888877776663 457778888887777
Q ss_pred HHHC
Q 003028 631 MLNL 634 (856)
Q Consensus 631 M~~~ 634 (856)
..+.
T Consensus 451 A~~~ 454 (484)
T COG4783 451 ASQQ 454 (484)
T ss_pred HHHh
Confidence 7663
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0048 Score=69.02 Aligned_cols=125 Identities=11% Similarity=0.123 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003028 396 VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCL 475 (856)
Q Consensus 396 ~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y 475 (856)
..-..|+..+...++++.|.++|+++.+.. |+ ....++..+...++..+|.+++.+.+.. .+-+......-...|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 344556666667777888888888877653 44 3344667777777777888887777754 334566666666777
Q ss_pred HccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 476 GKAGHLQAAHQLFCEMVNQGCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQ 527 (856)
Q Consensus 476 ~k~g~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 527 (856)
.+.++.+.|.++.+++.+. .| +..+|..|..+|.+.|+++.|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7888888888888888765 34 44588888888888888888887777664
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.43 Score=56.98 Aligned_cols=106 Identities=18% Similarity=0.277 Sum_probs=52.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003028 372 RARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSY--GRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVA 449 (856)
Q Consensus 372 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~--~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A 449 (856)
..+++..|....+.+.++ .|+.. |...+.++ .+.|+.++|..+++.....+.. |..|..++-..|...+++++|
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 345555555555555543 23332 22223222 3455555555555555443322 555555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003028 450 MDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQA 483 (856)
Q Consensus 450 ~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~ 483 (856)
..+|+..... .|+......+..+|.+.+.+.+
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 5555555443 3445555555555555554443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00018 Score=50.33 Aligned_cols=33 Identities=36% Similarity=0.532 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003028 606 PTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKP 638 (856)
Q Consensus 606 ~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~P 638 (856)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466667777777777777777777776666665
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0018 Score=72.74 Aligned_cols=124 Identities=21% Similarity=0.173 Sum_probs=101.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003028 530 GFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK--NWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPT 607 (856)
Q Consensus 530 gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~--g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t 607 (856)
+...+......+++.+....++++++.++...+.. ....-..|..++|+.|.+.|..+.+..+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556777788888888888888888888888765 2223345567899999999999999999988888899999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003028 608 CNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEA 653 (856)
Q Consensus 608 ~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~ 653 (856)
+|.||+.|.+.|++..|.++..+|..++...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988888888888888888888887766
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0036 Score=60.30 Aligned_cols=103 Identities=11% Similarity=-0.022 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 538 YSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR 617 (856)
Q Consensus 538 y~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~ 617 (856)
+..+...+...|++++|...|....... ..+...|..+..++.+.|++++|...|+...... +.+...|..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3445566677778888887777777654 3366777777777778888888888888877642 4467777777788888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003028 618 VGQLSDAYHLLQGMLNLGLKPSLQTYT 644 (856)
Q Consensus 618 ~g~~e~A~~l~~~M~~~g~~Pd~~ty~ 644 (856)
.|++++|+..|+..++ +.|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~--~~p~~~~~~ 129 (144)
T PRK15359 105 MGEPGLAREAFQTAIK--MSYADASWS 129 (144)
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHH
Confidence 8888888888888776 456654444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00022 Score=49.90 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 003028 711 GLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYP 743 (856)
Q Consensus 711 ~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~~P 743 (856)
.+||+++++|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 479999999999999999999999999999987
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0061 Score=57.52 Aligned_cols=106 Identities=14% Similarity=0.068 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 537 TYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFL 616 (856)
Q Consensus 537 ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~ 616 (856)
....+...+...|++++|...|+.+...+ ..+...+..+...|.+.|++++|..+|+...+.. +.+...|..+...|.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 34455566667777777777777776644 3356677777777777788888888887776643 445667777777788
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003028 617 RVGQLSDAYHLLQGMLNLGLKPSLQTYTLL 646 (856)
Q Consensus 617 ~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~L 646 (856)
..|++++|+..|+..++ +.|+...+..+
T Consensus 97 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 124 (135)
T TIGR02552 97 ALGEPESALKALDLAIE--ICGENPEYSEL 124 (135)
T ss_pred HcCCHHHHHHHHHHHHH--hccccchHHHH
Confidence 88888888888877776 34555554433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.058 Score=60.25 Aligned_cols=218 Identities=17% Similarity=0.081 Sum_probs=130.3
Q ss_pred HHHhcC-CHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHc
Q 003028 404 SYGRAN-YLNEALDVFKQMQV---VGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAG--LSPDTFTYSVIINCLGK 477 (856)
Q Consensus 404 ~~~~~g-~~~~A~~lf~~m~~---~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g--~~pd~~ty~~Li~~y~k 477 (856)
.+.+.| +.....++|+++.. .+-.|.....+ -=.-..++..+...-+.|.... -.|+...+...+.....
T Consensus 211 ~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~T----HPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~ 286 (484)
T COG4783 211 TLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLT----HPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYE 286 (484)
T ss_pred HHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhc----CCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhc
Confidence 334445 34555566776652 33233322111 1112234444554555554321 23555555555555444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 003028 478 AGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD-KVTYSIVMEVLGHCGYLDEAEA 556 (856)
Q Consensus 478 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd-~~ty~~ll~a~~~~g~~~~A~~ 556 (856)
...-..+..++.+..+ +--...+--..-.+...|++++|+..++.+... .|+ ........+.+...++..+|.+
T Consensus 287 ~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e 361 (484)
T COG4783 287 ALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIE 361 (484)
T ss_pred cccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 4433333333333332 112233333444556778888888888887765 344 4444555667788888888888
Q ss_pred HHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 557 VFAEMRRKNWVPD-EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 557 l~~~m~~~g~~pd-~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.++.+.... |+ ....-.+.++|.+.|++.+|..+++..... .+-|...|..|..+|...|+..+|..-.-++..
T Consensus 362 ~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 362 RLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 888887643 44 556667778888888888888888887754 366788888888888888888888777666553
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.3 Score=58.79 Aligned_cols=383 Identities=13% Similarity=0.056 Sum_probs=212.3
Q ss_pred ChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003028 339 DHTVALGFFNWLRRQAGFKHD-EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDV 417 (856)
Q Consensus 339 ~~~~Al~~f~~m~~~~g~~pd-~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l 417 (856)
+...|+..|-...+ ..++ ...|..|.+.|+...+...|.+.|+...+.. .-+...+..+...|++..+++.|..+
T Consensus 473 ~~~~al~ali~alr---ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 473 NSALALHALIRALR---LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hHHHHHHHHHHHHh---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 44455555544433 2233 3579999999999989999999999887642 23667888899999999999999998
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 003028 418 FKQMQVVG-CEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGC 496 (856)
Q Consensus 418 f~~m~~~g-~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~ 496 (856)
.-..-+.. ...-...|...--.|.+.++...|..-|+...+.. +-|...|..+..+|..+|++..|.++|.+....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 43322211 00111223334445678889999999999888764 347889999999999999999999999887764
Q ss_pred CCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH-------
Q 003028 497 IPNLVTYNI--MIALQAKARNYQSALKLYRDMQNA------GFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEM------- 561 (856)
Q Consensus 497 ~pd~~ty~~--Li~~~~~~g~~~~A~~ll~~M~~~------gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m------- 561 (856)
.|+ .+|.. ..-..+..|.+.+|+..+...... +..--..++..+...+...|-...+..+++.-
T Consensus 626 rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 626 RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 232 23332 233456788898888888766432 11111223333333333333333333333322
Q ss_pred HHcCCCCCHhhHHHHHH-------------------HHH----hcCCH---H---HHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 562 RRKNWVPDEPVYGLLVD-------------------LWG----KAGNV---R---KAWEWYEAMLQAGLRPNVPTCNSLL 612 (856)
Q Consensus 562 ~~~g~~pd~~~y~~Li~-------------------~~~----k~g~~---~---~A~~l~~~m~~~g~~pd~~t~n~Li 612 (856)
.......+...|-.+-+ .+. +.+.. | -+.+.+-. ...+.-+..+|-.|+
T Consensus 705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~WyNLG 782 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYPWYNLG 782 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccchHHHHh
Confidence 21111111111111111 111 11111 1 00000000 000112234454454
Q ss_pred HHHHH----c----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCC
Q 003028 613 SAFLR----V----GQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPG 684 (856)
Q Consensus 613 ~ay~~----~----g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~ 684 (856)
..|.+ . .+...|+..+.+.++ +.-|...|...|......|.+.-+..++-.-....+..+..+..++..+
T Consensus 783 inylr~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 783 INYLRYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLV 860 (1238)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeE
Confidence 44433 1 223456777777665 3444455555555555556666555555555555566666666655544
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHH
Q 003028 685 PDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEV 735 (856)
Q Consensus 685 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~ 735 (856)
... +..+.+...+.+....++. +..-|--..-..-..|+.-++..+|..
T Consensus 861 l~n-~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 861 LEN-QDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred Eec-ccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 433 4567777778777766543 222222222223346777777777765
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0031 Score=70.88 Aligned_cols=121 Identities=18% Similarity=0.216 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003028 393 PNVVTYNRLIHSYGRANYLNEALDVFKQMQVV--GCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSV 470 (856)
Q Consensus 393 pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~--g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~ 470 (856)
.+......+++.+....+++++.+++.+.+.. ....-..|..+++..|.+.|..+.++.++..=..-|+-||.+++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34555555566555556666666666666543 1112233445666666666666666666666666666666666666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003028 471 IINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKA 513 (856)
Q Consensus 471 Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~ 513 (856)
||+.+.+.|++..|.+++..|..++...+..|+..-+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666666666555544555555444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0057 Score=68.45 Aligned_cols=127 Identities=15% Similarity=0.148 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 361 HTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIH 440 (856)
Q Consensus 361 ~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~ 440 (856)
+.-..|+..+...++++.|..+|+++.+.. |++ ...|++.+...++-.+|.+++++..... +.|...+......|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344556777778899999999999999863 554 4457888888999999999999998653 55777777778889
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003028 441 AKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 441 ~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~ 493 (856)
.+.++++.|+++.+++... .+-+-.+|..|..+|.+.|+++.|+-.+..+.-
T Consensus 245 l~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999999986 233456999999999999999999999987763
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.01 Score=55.98 Aligned_cols=88 Identities=17% Similarity=0.160 Sum_probs=34.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 003028 403 HSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQ 482 (856)
Q Consensus 403 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~ 482 (856)
..+.+.|++++|.+.|+.+...+ +.+...|..+...+.+.|++++|..+++...+.+ +.+...+..+...|...|+++
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHH
Confidence 33334444444444444433322 2233333334444444444444444444433331 222333333333444444444
Q ss_pred HHHHHHHHHH
Q 003028 483 AAHQLFCEMV 492 (856)
Q Consensus 483 ~A~~lf~~m~ 492 (856)
+|.+.|+...
T Consensus 103 ~A~~~~~~al 112 (135)
T TIGR02552 103 SALKALDLAI 112 (135)
T ss_pred HHHHHHHHHH
Confidence 4444444333
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.18 Score=56.92 Aligned_cols=322 Identities=13% Similarity=0.122 Sum_probs=185.3
Q ss_pred hhChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHD-EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEAL 415 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd-~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 415 (856)
++++..|++=-..-. .+.|+ ...|+-...++.-.|++++|..-|.+-.+.. +-|...++-|..++.-. ..+.
T Consensus 49 ~~~~~~al~da~k~~---~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~---~~~~ 121 (539)
T KOG0548|consen 49 LGSYEKALKDATKTR---RLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLED---YAAD 121 (539)
T ss_pred HhhHHHHHHHHHHHH---hcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH---HHhh
Confidence 356666665433333 35565 4578888899999999999999999888752 23566777777777111 1112
Q ss_pred HHHHH----HHHcCC-----CCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHH--------CC-------CCC-
Q 003028 416 DVFKQ----MQVVGC-----EPDRVTYCTLIDIHAKA-------GFLDVAMDMYKKMQA--------AG-------LSP- 463 (856)
Q Consensus 416 ~lf~~----m~~~g~-----~pd~~ty~~Ll~~~~k~-------g~~~~A~~l~~~m~~--------~g-------~~p- 463 (856)
+.|.. +...+. ......|..++..+-+. .+.+...+..-.+.. .| ..|
T Consensus 122 ~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~ 201 (539)
T KOG0548|consen 122 QLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC 201 (539)
T ss_pred hhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc
Confidence 22211 000010 00112233333332211 011111111111111 11 111
Q ss_pred -----------C----------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 464 -----------D----------TFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKL 522 (856)
Q Consensus 464 -----------d----------~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l 522 (856)
| ..-...+.++..+..+++.|.+-++...+.. -++.-++....+|...|.+.++...
T Consensus 202 ~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~ 279 (539)
T KOG0548|consen 202 KQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIEL 279 (539)
T ss_pred cccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcc
Confidence 0 1123446677777888888888888877753 3555566777888888888877776
Q ss_pred HHHHHHcCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH----------------------
Q 003028 523 YRDMQNAGFEPDKVTYSIV-------MEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVY---------------------- 573 (856)
Q Consensus 523 l~~M~~~gi~pd~~ty~~l-------l~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y---------------------- 573 (856)
-....+.|.. ...-|+.| -.+|.+.++++.+...|.+.......|+...-
T Consensus 280 c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A 358 (539)
T KOG0548|consen 280 CEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKA 358 (539)
T ss_pred hHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHH
Confidence 6665554422 11223322 33555667788888888776654333332111
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 003028 574 ---GLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL-QTYTLLLSC 649 (856)
Q Consensus 574 ---~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~-~ty~~Ll~a 649 (856)
..-...+.+.|++..|...|.+++... +-|...|....-+|.+.|.+..|+.=.+..++. .|+. ..|.-=..+
T Consensus 359 ~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~a 435 (539)
T KOG0548|consen 359 EEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAA 435 (539)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHH
Confidence 111345678899999999999999875 668899999999999999999999988887763 4543 223222223
Q ss_pred HHhcCCcchHHHHHHHHHHcCC
Q 003028 650 CTEARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 650 ~~~~g~~~~a~~l~~~m~~~g~ 671 (856)
+....+++.+...+++-.+..+
T Consensus 436 l~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 436 LRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhcCc
Confidence 3334445555555554444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.23 Score=51.12 Aligned_cols=186 Identities=11% Similarity=0.042 Sum_probs=100.3
Q ss_pred ChhHHHHHHHHHHH--hCC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003028 339 DHTVALGFFNWLRR--QAG-FKHDEH-TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEA 414 (856)
Q Consensus 339 ~~~~Al~~f~~m~~--~~g-~~pd~~-~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A 414 (856)
+.++.++++..+.. ..| ..++.. .|..++-+...+|+.+.|...++.+..+ ++-+...-..-...+-..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhH
Confidence 34455555555542 123 444433 3455555666777777777777777654 221211111111122345677777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 003028 415 LDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 415 ~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
+++++.+.+.. +-|.++|--=+...-..|+--+|++-+.+..+. +..|...|.-|...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 77777776654 555566655555555566666666666666554 4556677777777777777777777666666643
Q ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 003028 495 GCIPNLVTYNIMIALQAKAR---NYQSALKLYRDMQN 528 (856)
Q Consensus 495 g~~pd~~ty~~Li~~~~~~g---~~~~A~~ll~~M~~ 528 (856)
. +.+...+..+...+.-.| +..-+.++|.+..+
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1 113333333443333322 33445555555544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0052 Score=55.15 Aligned_cols=80 Identities=21% Similarity=0.368 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHcCCCCCHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGC-QPNVVTYNRLIHSYGRANY--------LNEALDVFKQMQVVGCEPDRVTY 433 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~-~pd~~ty~~Li~~~~~~g~--------~~~A~~lf~~m~~~g~~pd~~ty 433 (856)
....|.-+...+++.....+|+.+++.|+ -|++.+|+.++.+.++... +-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 33455556666888888888888888888 7888888888877766532 33455666666666666666666
Q ss_pred HHHHHHHHH
Q 003028 434 CTLIDIHAK 442 (856)
Q Consensus 434 ~~Ll~~~~k 442 (856)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 666665543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00048 Score=46.95 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 003028 712 LVDAVVDFLHKSGLKEEAGSVWEVAAQKNV 741 (856)
Q Consensus 712 ~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~ 741 (856)
+||++|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 699999999999999999999999998874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0074 Score=60.70 Aligned_cols=106 Identities=20% Similarity=0.364 Sum_probs=65.5
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003028 356 FKHDEHTYTTMVGILGRA-----RQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDR 430 (856)
Q Consensus 356 ~~pd~~~y~~Li~~~~k~-----g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~ 430 (856)
-..|-.+|..+|+.|.+. |.++-....+..|.+-|+..|..+|+.||+.+=+..-. -..+|+.+-
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fv--p~n~fQ~~F-------- 112 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFV--PRNFFQAEF-------- 112 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcc--cccHHHHHh--------
Confidence 345677777777777644 56666677777777777777777777777765442211 111121111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 003028 431 VTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGH 480 (856)
Q Consensus 431 ~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~ 480 (856)
.- .-.+.+-|++++++|...|+-||..++..|++.|++.+.
T Consensus 113 -------~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 -------MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -------cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 00 112456677777777777777777777777777777664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00048 Score=46.91 Aligned_cols=29 Identities=34% Similarity=0.618 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003028 607 TCNSLLSAFLRVGQLSDAYHLLQGMLNLG 635 (856)
Q Consensus 607 t~n~Li~ay~~~g~~e~A~~l~~~M~~~g 635 (856)
+||.||.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0071 Score=54.31 Aligned_cols=42 Identities=14% Similarity=0.328 Sum_probs=22.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHc
Q 003028 436 LIDIHAKAGFLDVAMDMYKKMQAAGL-SPDTFTYSVIINCLGK 477 (856)
Q Consensus 436 Ll~~~~k~g~~~~A~~l~~~m~~~g~-~pd~~ty~~Li~~y~k 477 (856)
.|.-|...+++.....+|+.+++.|+ .|+..+|+.++.+.++
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~ 73 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK 73 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 34444444555555555555555555 5555555555555444
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.028 Score=54.02 Aligned_cols=22 Identities=23% Similarity=0.105 Sum_probs=9.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC
Q 003028 438 DIHAKAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 438 ~~~~k~g~~~~A~~l~~~m~~~ 459 (856)
..+...|++++|...|+.+...
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh
Confidence 3344444444444444444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.087 Score=54.14 Aligned_cols=160 Identities=16% Similarity=0.177 Sum_probs=98.0
Q ss_pred cCCHHHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCh
Q 003028 478 AGHLQAAHQLFCEMVNQ---G-CIPNLV-TYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVME-VLGHCGYL 551 (856)
Q Consensus 478 ~g~~~~A~~lf~~m~~~---g-~~pd~~-ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~-a~~~~g~~ 551 (856)
..+.++..+++.+|... | ..++.. .|..++-+....|+.+.|...++++...- |...-...|-. -+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 34577777777777642 3 333433 34445566667777777777777776653 33221111111 12345777
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 552 DEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGM 631 (856)
Q Consensus 552 ~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M 631 (856)
++|+++++.+.+.+ +.|..+|--=+-+.-..|+--+|.+-+.+..+. +.-|...|..+...|...|++++|.-.+++|
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 77777777777654 445566665555555666666777666666654 4567777777777777777777777777777
Q ss_pred HHCCCCCCHHHH
Q 003028 632 LNLGLKPSLQTY 643 (856)
Q Consensus 632 ~~~g~~Pd~~ty 643 (856)
+- +.|-...|
T Consensus 181 ll--~~P~n~l~ 190 (289)
T KOG3060|consen 181 LL--IQPFNPLY 190 (289)
T ss_pred HH--cCCCcHHH
Confidence 75 45544433
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.022 Score=54.74 Aligned_cols=116 Identities=14% Similarity=0.047 Sum_probs=56.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCCHHH
Q 003028 513 ARNYQSALKLYRDMQNAGFEPD--KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPD--EPVYGLLVDLWGKAGNVRK 588 (856)
Q Consensus 513 ~g~~~~A~~ll~~M~~~gi~pd--~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd--~~~y~~Li~~~~k~g~~~~ 588 (856)
.++...+...++.+......-. ......+...+...|++++|...|+.+......+. ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555554321110 11222233445555666666666666555431111 1123334455556666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 589 AWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQG 630 (856)
Q Consensus 589 A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~ 630 (856)
|+..++..... ......+......|.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666543322 22334455555666666666666666654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.014 Score=49.54 Aligned_cols=17 Identities=0% Similarity=0.071 Sum_probs=6.5
Q ss_pred HHhcCCHHHHHHHHHHH
Q 003028 370 LGRARQFGAINKLLDQM 386 (856)
Q Consensus 370 ~~k~g~~~~A~~lf~~m 386 (856)
+...|++++|..+|+..
T Consensus 10 ~~~~~~~~~A~~~~~~~ 26 (100)
T cd00189 10 YYKLGDYDEALEYYEKA 26 (100)
T ss_pred HHHHhcHHHHHHHHHHH
Confidence 33333333333333333
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.013 Score=58.98 Aligned_cols=104 Identities=14% Similarity=0.256 Sum_probs=68.8
Q ss_pred CCCCCHHHHHHHHHhhhCh--------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003028 322 NYSMDAYQANQVLKQLQDH--------TVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQP 393 (856)
Q Consensus 322 ~~~~~~~~~~~vL~~l~~~--------~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~p 393 (856)
+-.-+..++..++..+... +=....+..|. ..|+..|..+|+.||+++=+. .+- -..+|+.+--
T Consensus 42 ~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~-efgv~kDL~~Y~~LLDvFPKg-~fv-p~n~fQ~~F~----- 113 (228)
T PF06239_consen 42 GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMD-EFGVEKDLEVYKALLDVFPKG-KFV-PRNFFQAEFM----- 113 (228)
T ss_pred hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHH-HcCCcccHHHHHHHHHhCCCC-Ccc-cccHHHHHhc-----
Confidence 3456777777777766322 22333445555 589999999999999998753 322 1222222211
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF 445 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~ 445 (856)
- --.+.+-|++++++|...|+-||..|+..|++.+.+.+.
T Consensus 114 ----------h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 ----------H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----------c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1 123557788999999999999999999999999877664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.018 Score=48.82 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGK 477 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k 477 (856)
|..+...+...|++++|..+|+++.+.. +.+...+..+...+...+++++|.+.|+...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 5566777788889999999998887653 3344677778888888889999999998887763 3345677788888888
Q ss_pred cCCHHHHHHHHHHHHHc
Q 003028 478 AGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 478 ~g~~~~A~~lf~~m~~~ 494 (856)
.|++++|...|....+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 89999998888877653
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.026 Score=60.80 Aligned_cols=130 Identities=13% Similarity=0.132 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK-AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCL 475 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k-~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y 475 (856)
+|..+++..-+.+..+.|..+|.+..+.+ ..+...|......-.. .++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555555555555555322 1122222222222112 34444466666665554 444555555666666
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003028 476 GKAGHLQAAHQLFCEMVNQGCIPN---LVTYNIMIALQAKARNYQSALKLYRDMQNA 529 (856)
Q Consensus 476 ~k~g~~~~A~~lf~~m~~~g~~pd---~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 529 (856)
.+.++.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666665543 1111 135666666666666666666666666553
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.062 Score=48.91 Aligned_cols=96 Identities=10% Similarity=0.016 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPN----VVTYNRLIHSYGRANYLNEALDVFKQMQVVGC--EPDRVTYCT 435 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd----~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~--~pd~~ty~~ 435 (856)
++-.+...+.+.|++++|.+.|+.+.+.. |+ ...+..+...+.+.|++++|...|+.+....- ......+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 34445555556666666666666665431 21 23444455566666666666666666554321 111334455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 003028 436 LIDIHAKAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 436 Ll~~~~k~g~~~~A~~l~~~m~~~ 459 (856)
+..++.+.|+.++|.+.++++.+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 555555566666666666665554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.79 Score=50.17 Aligned_cols=278 Identities=11% Similarity=0.094 Sum_probs=152.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
+|..+.......|+.+.|..+++ .+|+..- =|-.+.+.++.+.| +.+..+.| .||. +|..|+..--
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~------~Ep~~~~---qVplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~L~~ 67 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE------LEPRASK---QVPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLHLKR 67 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH------cCCChHH---HHHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHHHHH
Confidence 46777788888999999988763 3465532 24455667777777 34445544 4443 4555554433
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003028 442 KAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALK 521 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ 521 (856)
+.. .. +++ .++.. .|. -..+...|++..+.+....+|.+--+. .......+-.++.. .+.++-..
T Consensus 68 ~l~-~s---~f~-~il~~--~p~---a~~l~~~~~r~~~~~~L~~~y~q~d~~----~~~a~~~l~~~~~~-~~~~~~~~ 132 (319)
T PF04840_consen 68 KLS-LS---QFF-KILNQ--NPV---ASNLYKKYCREQDRELLKDFYYQEDRF----QELANLHLQEALSQ-KDVEEKIS 132 (319)
T ss_pred hCC-HH---HHH-HHHHh--Ccc---hHHHHHHHHHhccHHHHHHHHHhcchH----HHHHHHHHHHHHhC-CChHHHHH
Confidence 332 22 223 22222 122 133455677766666655555432110 11111222222222 34444333
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH---HH-cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 522 LYRDMQNA-GFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEM---RR-KNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAM 596 (856)
Q Consensus 522 ll~~M~~~-gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m---~~-~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m 596 (856)
.+....+. +-..+......+ .++..++++.- .+ .+......+.+..|.-+...|+...|.++-.+.
T Consensus 133 ~L~~a~~~y~~~k~~~f~~~~---------~e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~F 203 (319)
T PF04840_consen 133 FLKQAQKLYSKSKNDAFEAKL---------IEEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEF 203 (319)
T ss_pred HHHHHHHHHHhcchhHHHHHH---------HHHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 33333221 000111111111 12222222221 11 122222334555677778889999998887776
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHH
Q 003028 597 LQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMF 676 (856)
Q Consensus 597 ~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~ 676 (856)
. -|+..-|...+.+|+..++|++-..+... +-++.-|..++.+|.+.|...+|..+..+
T Consensus 204 k----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k----------- 262 (319)
T PF04840_consen 204 K----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPK----------- 262 (319)
T ss_pred C----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHh-----------
Confidence 4 48999999999999999999987776432 22348889999999988876555443311
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHH
Q 003028 677 LLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSV 732 (856)
Q Consensus 677 ~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~l 732 (856)
+ .+..-+.+|.++|.+.+|.+.
T Consensus 263 ------------------------~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 263 ------------------------I----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred ------------------------C----------ChHHHHHHHHHCCCHHHHHHH
Confidence 1 124667889999999999765
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.19 Score=54.15 Aligned_cols=144 Identities=16% Similarity=0.236 Sum_probs=68.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHH
Q 003028 472 INCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKA-RNYQSALKLYRDMQNA----GFEPD--KVTYSIVMEV 544 (856)
Q Consensus 472 i~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~-g~~~~A~~ll~~M~~~----gi~pd--~~ty~~ll~a 544 (856)
+..|.+.|++..|-+++..+- ..|-.. |++++|++.|++..+. + .+. ...+..+...
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 344556666666555554443 233344 5666666666654322 2 111 2234455566
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-----CHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHH
Q 003028 545 LGHCGYLDEAEAVFAEMRRKNWVP-----DEP-VYGLLVDLWGKAGNVRKAWEWYEAMLQA--GLRPN--VPTCNSLLSA 614 (856)
Q Consensus 545 ~~~~g~~~~A~~l~~~m~~~g~~p-----d~~-~y~~Li~~~~k~g~~~~A~~l~~~m~~~--g~~pd--~~t~n~Li~a 614 (856)
+.+.|++++|.++|+++....... +.. .|-..+-++...||+..|.+.|++.... ++..+ ......||.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 667777777777777666542211 111 1222233445567777777777776542 12112 3445556666
Q ss_pred HHH--cCCHHHHHHHHHHH
Q 003028 615 FLR--VGQLSDAYHLLQGM 631 (856)
Q Consensus 615 y~~--~g~~e~A~~l~~~M 631 (856)
|-. ...+++|+.-|+.+
T Consensus 245 ~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTS
T ss_pred HHhCCHHHHHHHHHHHccc
Confidence 543 22355555555544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.04 Score=59.33 Aligned_cols=131 Identities=15% Similarity=0.200 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 361 HTYTTMVGILGRARQFGAINKLLDQMVRDG-CQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI 439 (856)
Q Consensus 361 ~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g-~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~ 439 (856)
.+|..++..+-+.+.++.|..+|.+..+.+ +..++....++|. |...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888888888888999999999988542 2233333344443 23356677799999988765 46777888888999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGLSPDT---FTYSVIINCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~~pd~---~ty~~Li~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
+.+.++.+.|..+|++.+.. +.++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998765 33222 48888898888999999999999888875
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.082 Score=48.11 Aligned_cols=95 Identities=9% Similarity=-0.058 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHH
Q 003028 399 NRLIHSYGRANYLNEALDVFKQMQVVGC--EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLS--PDTFTYSVIINC 474 (856)
Q Consensus 399 ~~Li~~~~~~g~~~~A~~lf~~m~~~g~--~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~--pd~~ty~~Li~~ 474 (856)
-.+...+.+.|++++|.+.|.++....- ......+..+..++.+.|+++.|...|+.+...... ....++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444445555555555555443210 001223333444444445555555555544432100 112333344444
Q ss_pred HHccCCHHHHHHHHHHHHH
Q 003028 475 LGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 475 y~k~g~~~~A~~lf~~m~~ 493 (856)
+.+.|+.++|.+.++++.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHhCChHHHHHHHHHHHH
Confidence 4444444444444444444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.053 Score=60.57 Aligned_cols=102 Identities=13% Similarity=0.024 Sum_probs=61.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 544 VLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSD 623 (856)
Q Consensus 544 a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~ 623 (856)
.+...|++++|..+|.++.+.. .-+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3445566666666666666543 2245556666666666677777777766666542 2345566666666777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003028 624 AYHLLQGMLNLGLKPSLQTYTLLLSC 649 (856)
Q Consensus 624 A~~l~~~M~~~g~~Pd~~ty~~Ll~a 649 (856)
|+..|++.++ +.|+...+...+..
T Consensus 89 A~~~~~~al~--l~P~~~~~~~~l~~ 112 (356)
T PLN03088 89 AKAALEKGAS--LAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 7777776665 44555444444433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.14 Score=50.73 Aligned_cols=91 Identities=11% Similarity=0.053 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPN--VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd--~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
...|..+...+...|++++|...|++..+....+. ...|..+...|.+.|++++|...+++..... +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44577777788888999999999988876432221 3577788888888899999999888887653 33456666677
Q ss_pred HHHHHcCCHHHHHH
Q 003028 438 DIHAKAGFLDVAMD 451 (856)
Q Consensus 438 ~~~~k~g~~~~A~~ 451 (856)
..+...|+...+..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 77777776544443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.16 Score=58.09 Aligned_cols=119 Identities=15% Similarity=0.112 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCC
Q 003028 604 NVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSP 683 (856)
Q Consensus 604 d~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~ 683 (856)
+..+...+..-+.+...+--|-++|..|-+. ..+.+...+.++|.+|..+-+..-+.-.+++.-....
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqw--- 813 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQW--- 813 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHH---
Confidence 3344445555555566666777777776431 3455556667777777665554433322222211111
Q ss_pred CCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCcccccCceeeeec
Q 003028 684 GPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKGMSYWLIN 757 (856)
Q Consensus 684 ~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~~Pd~~t~~~~~~w~~~ 757 (856)
..+ .|. +.-.-.+|.|.|+-.||.++++++....+.-+...--+..||.++
T Consensus 814 -------LAE--------------~Dr--FeEAqkAfhkAGr~~EA~~vLeQLtnnav~E~Rf~DA~y~yw~L~ 864 (1081)
T KOG1538|consen 814 -------LAE--------------NDR--FEEAQKAFHKAGRQREAVQVLEQLTNNAVAESRFNDAAYYYWMLS 864 (1081)
T ss_pred -------hhh--------------hhh--HHHHHHHHHHhcchHHHHHHHHHhhhhhhhhhhhccchhHHHHhh
Confidence 000 011 223346788999999999999988766554333222334557654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.8 Score=48.19 Aligned_cols=57 Identities=12% Similarity=0.019 Sum_probs=32.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHH---HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 366 MVGILGRARQFGAINKLLDQMVRDGCQPNV-VTY---NRLIHSYGRANYLNEALDVFKQMQVV 424 (856)
Q Consensus 366 Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~-~ty---~~Li~~~~~~g~~~~A~~lf~~m~~~ 424 (856)
....+.+.|++++|.+.|+.+... .|+. ... -.+..+|.+.+++++|...|++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333445567777777777777654 2322 221 23445666677777777777766654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.25 E-value=1.9 Score=52.37 Aligned_cols=181 Identities=11% Similarity=0.033 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003028 481 LQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAE 560 (856)
Q Consensus 481 ~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~ 560 (856)
...|...|-+-...... =...|..|-..|....+...|.+.|+...+.. ..|......+.+.|+...++++|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 44555544443332111 23466777777777667777777777766542 12344566677777777777777777322
Q ss_pred HHHcCCCCCHhhHHH--HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003028 561 MRRKNWVPDEPVYGL--LVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKP 638 (856)
Q Consensus 561 m~~~g~~pd~~~y~~--Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~P 638 (856)
.-+.. ..-...++. .--.|.+.++...|..-|+...... +.|...|..+..+|...|++..|+++|.+... +.|
T Consensus 552 ~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP 627 (1238)
T KOG1127|consen 552 AAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRP 627 (1238)
T ss_pred Hhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCc
Confidence 22211 001111111 2334667777888888887776543 45777888888888888888888888887775 556
Q ss_pred CHHHHHHHHHH--HHhcCCcchHHHHHHHHHH
Q 003028 639 SLQTYTLLLSC--CTEARSPYDMGFCHELMAV 668 (856)
Q Consensus 639 d~~ty~~Ll~a--~~~~g~~~~a~~l~~~m~~ 668 (856)
+. +|.....+ -+..|.++++...+.++..
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 53 33333332 3456777777666655543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.21 Score=49.46 Aligned_cols=131 Identities=17% Similarity=0.151 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD--RVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVI 471 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd--~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~L 471 (856)
....|..+...|...|++++|...|++.......+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445677778888889999999999998876532222 4578888888899999999999999888753 2356666677
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003028 472 INCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY 550 (856)
Q Consensus 472 i~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~ 550 (856)
..+|...|+...+..-++.... .+++|++++++....+ |+. |..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~--p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLA--PNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhC--chh--HHHHHHHHHhcCc
Confidence 7777777776555443333221 2466777777665532 332 5555555554443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.081 Score=52.20 Aligned_cols=81 Identities=10% Similarity=-0.066 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQP--NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~p--d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
...|..+...+...|++++|...|+........+ ...+|..+...|...|++++|++.+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4456666677777788888888777776532111 12466677777777777777777777776542 22344455555
Q ss_pred HHHH
Q 003028 438 DIHA 441 (856)
Q Consensus 438 ~~~~ 441 (856)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.013 Score=50.42 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 374 RQFGAINKLLDQMVRDGCQ-PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDM 452 (856)
Q Consensus 374 g~~~~A~~lf~~m~~~g~~-pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l 452 (856)
|+++.|..+|+.+.+.... ++...|-.+..+|.+.|++++|.+++++ ...+ ..+....-.+..+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555543210 1223333355555555555555555555 2111 11122222334555555555555555
Q ss_pred HHH
Q 003028 453 YKK 455 (856)
Q Consensus 453 ~~~ 455 (856)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.27 Score=57.51 Aligned_cols=75 Identities=15% Similarity=0.077 Sum_probs=61.4
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003028 568 PDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLL 646 (856)
Q Consensus 568 pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~L 646 (856)
.+...|..+.-.+...|++++|...|++..+. .|+...|..+...|...|+.++|.+.+++... +.|...||...
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~~~~ 492 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTLYWI 492 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchHHHH
Confidence 45567777766677789999999999999885 47888999999999999999999999999886 56776676443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.12 Score=50.98 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003028 434 CTLIDIHAKAGFLDVAMDMYKKMQAAGLSP--DTFTYSVIINCLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 434 ~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~p--d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~ 493 (856)
..+...+...|++++|+..|++.......+ ...++..+..+|...|++++|.+.++....
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444444331111 112344444444555555555555544443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=1.3 Score=46.51 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=28.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 576 LVDLWGKAGNVRKAWEWYEAMLQA--GLRPNVPTCNSLLSAFLRVGQLSDAYHLLQG 630 (856)
Q Consensus 576 Li~~~~k~g~~~~A~~l~~~m~~~--g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~ 630 (856)
+..-|.+.|.+..|..-|+.+.+. +.+......-.++.+|...|..++|......
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344455566666666666666543 1122333444555666666666666555443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.019 Score=49.53 Aligned_cols=47 Identities=13% Similarity=0.271 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 409 NYLNEALDVFKQMQVVGCE-PDRVTYCTLIDIHAKAGFLDVAMDMYKK 455 (856)
Q Consensus 409 g~~~~A~~lf~~m~~~g~~-pd~~ty~~Ll~~~~k~g~~~~A~~l~~~ 455 (856)
|+++.|+.+|+++.+.... ++...+..+..+|.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555555443210 1222333344455555555555555544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.17 Score=56.47 Aligned_cols=85 Identities=14% Similarity=0.042 Sum_probs=34.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003028 407 RANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQ 486 (856)
Q Consensus 407 ~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~ 486 (856)
..|++++|+++|++..+.. +-+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|..
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3344444444444444332 2233334444444444444444444444444331 1133334444444444444444444
Q ss_pred HHHHHHH
Q 003028 487 LFCEMVN 493 (856)
Q Consensus 487 lf~~m~~ 493 (856)
.|++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.75 Score=49.59 Aligned_cols=145 Identities=13% Similarity=0.174 Sum_probs=77.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHH
Q 003028 438 DIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKA-GHLQAAHQLFCEMVNQ----GCIP-NLVTYNIMIALQA 511 (856)
Q Consensus 438 ~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~-g~~~~A~~lf~~m~~~----g~~p-d~~ty~~Li~~~~ 511 (856)
..|...|++..|-+++.++ ...|-.. |++++|.+.|++..+. +..- -..++..+...+.
T Consensus 102 ~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 4555666666655555443 3345555 6777777777765432 2100 1234556677788
Q ss_pred HcCCHHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC--HhhHHHHHHHHH
Q 003028 512 KARNYQSALKLYRDMQNAGFE-----PDKV-TYSIVMEVLGHCGYLDEAEAVFAEMRRKN--WVPD--EPVYGLLVDLWG 581 (856)
Q Consensus 512 ~~g~~~~A~~ll~~M~~~gi~-----pd~~-ty~~ll~a~~~~g~~~~A~~l~~~m~~~g--~~pd--~~~y~~Li~~~~ 581 (856)
+.|++++|+++|++....-.. .+.. .|...+-++...|+...|.+.++...... +..+ ..+...||.+|-
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 888888888888887654322 1221 22233335556788888888888876542 2211 334455566654
Q ss_pred hc--CCHHHHHHHHHHHH
Q 003028 582 KA--GNVRKAWEWYEAML 597 (856)
Q Consensus 582 k~--g~~~~A~~l~~~m~ 597 (856)
.. ..++.|..-|+.+.
T Consensus 247 ~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS
T ss_pred hCCHHHHHHHHHHHcccC
Confidence 32 34555555555543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.79 E-value=3.8 Score=47.85 Aligned_cols=105 Identities=13% Similarity=0.097 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 432 TYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQA 511 (856)
Q Consensus 432 ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~ 511 (856)
.|+.+...++....+++|.+.|..-.. . ...+.+|.+..++++-+.+-..+.+ +....-.|..++.
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHH
Confidence 455555555555555555555543211 0 1223444444444444444333332 4445556666777
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003028 512 KARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFA 559 (856)
Q Consensus 512 ~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~ 559 (856)
..|.-++|.+.|-+-- .| ...+..|...+++.+|.++-+
T Consensus 864 svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred hhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666553321 11 234455666666666665544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.31 Score=47.04 Aligned_cols=95 Identities=12% Similarity=0.024 Sum_probs=62.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 467 TYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLG 546 (856)
Q Consensus 467 ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~ 546 (856)
..-.+..-+...|++++|.++|+.+...... +..-|-.|-.++-..|++.+|+..|.......+ -|...+-.+-.++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 3344455566777777777777777654322 455566677777777777777777777766542 34556666677777
Q ss_pred hcCChHHHHHHHHHHHH
Q 003028 547 HCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 547 ~~g~~~~A~~l~~~m~~ 563 (856)
..|+.+.|++.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.59 Score=54.75 Aligned_cols=64 Identities=13% Similarity=0.079 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003028 464 DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNA 529 (856)
Q Consensus 464 d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 529 (856)
+...|.++.-.+...|++++|...|++..... |+...|..+...|...|+.++|.+.|++....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44556555555555677777777777766653 46666666677777777777777777666553
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.045 Score=44.73 Aligned_cols=64 Identities=31% Similarity=0.384 Sum_probs=41.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 581 GKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLL 647 (856)
Q Consensus 581 ~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll 647 (856)
.+.|++++|..+|+.+.... +-+...+-.+..+|.+.|++++|..+++++.. ..|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHHH
Confidence 35677777777777776542 33666667777777777777777777777775 356655554443
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.59 Score=45.15 Aligned_cols=86 Identities=10% Similarity=0.063 Sum_probs=39.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003028 369 ILGRARQFGAINKLLDQMVRDGCQP-NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLD 447 (856)
Q Consensus 369 ~~~k~g~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~ 447 (856)
.+...|++++|.++|+.+... .| +..-|-.|-.++-..|++++|++.|....... +-|..++-.+-.++...|+.+
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHH
Confidence 334445555555555544432 12 23333444444444455555555555444443 234444444444444555555
Q ss_pred HHHHHHHHHH
Q 003028 448 VAMDMYKKMQ 457 (856)
Q Consensus 448 ~A~~l~~~m~ 457 (856)
.|.+-|+..+
T Consensus 121 ~A~~aF~~Ai 130 (157)
T PRK15363 121 YAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHH
Confidence 5554444443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.41 E-value=9.6 Score=47.52 Aligned_cols=85 Identities=18% Similarity=0.090 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q 003028 573 YGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQ--TYTLLLSCC 650 (856)
Q Consensus 573 y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~--ty~~Ll~a~ 650 (856)
|.+..+.+.....+++|.-+|+..-+ ...-+.+|..+|++.+|+.+..+|.. .-|.. +-..|..-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHH
Confidence 44444455566778888877776543 13567888889999999988887753 12222 224566667
Q ss_pred HhcCCcchHHHHHHHHHHc
Q 003028 651 TEARSPYDMGFCHELMAVS 669 (856)
Q Consensus 651 ~~~g~~~~a~~l~~~m~~~ 669 (856)
...++.-+|.++..+....
T Consensus 1010 ~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred HHcccchhHHHHHHHHhcC
Confidence 8888888887776655433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.36 E-value=4.2 Score=42.34 Aligned_cols=144 Identities=18% Similarity=0.173 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH----
Q 003028 502 TYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLV---- 577 (856)
Q Consensus 502 ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li---- 577 (856)
..+.++..+.-.|.+.-.+.++++..+...+-+......|+..-.+.|+.+.|...|++..+..-..+....+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4456677777778888888888888887666677777888888888899999999999887654444555554444
Q ss_pred -HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 578 -DLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLS 648 (856)
Q Consensus 578 -~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~ 648 (856)
..|.-.+++..|...|.++.... +.|+..-|.-.-+..-.|+..+|++.+..|++ ..|...+-.+++-
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~~ 327 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVLF 327 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHHH
Confidence 34566788889999998887653 45666667666667778899999999999997 4566655554443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.68 Score=42.93 Aligned_cols=53 Identities=15% Similarity=0.205 Sum_probs=22.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 406 GRANYLNEALDVFKQMQVVGCEPD--RVTYCTLIDIHAKAGFLDVAMDMYKKMQA 458 (856)
Q Consensus 406 ~~~g~~~~A~~lf~~m~~~g~~pd--~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~ 458 (856)
-..|+.++|+.+|++....|+... ...+..+.+.+...|++++|..+|++...
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444443322 12233333444444444444444444433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.069 Score=43.29 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=41.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 576 LVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 576 Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+...+.+.|++++|...|+.+.+.. +-+...|..+..++.+.|++++|...|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455677788888888888887653 33667777777888888888888888887775
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.18 E-value=9.4 Score=45.32 Aligned_cols=310 Identities=9% Similarity=0.051 Sum_probs=151.3
Q ss_pred hcCCCCCHHHHH-----HHHHhh---hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHH
Q 003028 320 NTNYSMDAYQAN-----QVLKQL---QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQF---GAINKLLDQMVR 388 (856)
Q Consensus 320 ~~~~~~~~~~~~-----~vL~~l---~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~---~~A~~lf~~m~~ 388 (856)
+.|+.++...+. .++.++ +.+..|.++-.|+....+ -....|......+.+..+. +.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~--~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPES--QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccc--cccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 345555555443 233333 567778888887753211 1145566666666665322 222222222322
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003028 389 DGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCE----PDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPD 464 (856)
Q Consensus 389 ~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~----pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd 464 (856)
. . -+-.+|..+..-...+|+.+.|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.|... .+
T Consensus 503 ~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~ 577 (829)
T KOG2280|consen 503 K-L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LN 577 (829)
T ss_pred c-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HH
Confidence 1 1 24456777777777788888887776542221100 01122334444555555555555555555432 11
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--HHH----HcCCCCCHHHH
Q 003028 465 TFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYR--DMQ----NAGFEPDKVTY 538 (856)
Q Consensus 465 ~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~--~M~----~~gi~pd~~ty 538 (856)
...|...+ .+.-.|..+|.+..... |..+ |-+.|-...+..+ +.-|. ... ..+..|+.
T Consensus 578 ~s~l~~~l------~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~-~a~~~~q~~~~~~~~~~r~~~l--- 641 (829)
T KOG2280|consen 578 RSSLFMTL------RNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQA-LASFHLQASYAAETIEGRIPAL--- 641 (829)
T ss_pred HHHHHHHH------HhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhh-hhhhhhhhhhhhhhhcccchhH---
Confidence 12221111 12334445554444321 1111 1122222222222 22111 100 11233332
Q ss_pred HHHHHHHHhcCChHHH----------HHHHHHHHH-cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003028 539 SIVMEVLGHCGYLDEA----------EAVFAEMRR-KNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPT 607 (856)
Q Consensus 539 ~~ll~a~~~~g~~~~A----------~~l~~~m~~-~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t 607 (856)
....++|.+.....-. ..+.+.+.. .+.....-+.+--+.-+...|+-.+|.++-.+.. -||-..
T Consensus 642 k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~ 717 (829)
T KOG2280|consen 642 KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRL 717 (829)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----Ccchhh
Confidence 2333344443331111 111222221 1323333445555666677788888888877765 478888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 003028 608 CNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFC 662 (856)
Q Consensus 608 ~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l 662 (856)
|.-=+.+++..+++++-+++-+.+. ...-|.-+..+|.+.|+.++|...
T Consensus 718 ~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KY 766 (829)
T KOG2280|consen 718 WWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKY 766 (829)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhh
Confidence 8888888888888888777665543 145677788888888876665543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.77 Score=42.53 Aligned_cols=91 Identities=21% Similarity=0.199 Sum_probs=48.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHhhHHHHHHHHHh
Q 003028 507 IALQAKARNYQSALKLYRDMQNAGFEPD--KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWV--PDEPVYGLLVDLWGK 582 (856)
Q Consensus 507 i~~~~~~g~~~~A~~ll~~M~~~gi~pd--~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~--pd~~~y~~Li~~~~k 582 (856)
..++-..|+.++|+.+|++....|.... ...+..+-..+...|++++|..+++........ .+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3445556666667766666666665443 224444555666666666666666666553211 011122222334455
Q ss_pred cCCHHHHHHHHHHHH
Q 003028 583 AGNVRKAWEWYEAML 597 (856)
Q Consensus 583 ~g~~~~A~~l~~~m~ 597 (856)
.|+.++|...+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 666666666655443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.21 Score=52.78 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=75.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 003028 546 GHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPN-VPTCNSLLSAFLRVGQLSDA 624 (856)
Q Consensus 546 ~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd-~~t~n~Li~ay~~~g~~e~A 624 (856)
.+.+++.+|...|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+..+.. .|+ ..+|..|-.+|...|++++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHH
Confidence 45677888888888877643 235666777778888888888888877777653 333 46788888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003028 625 YHLLQGMLNLGLKPSLQTYTLLLSCC 650 (856)
Q Consensus 625 ~~l~~~M~~~g~~Pd~~ty~~Ll~a~ 650 (856)
++.|++.++ +.|+..+|..=|...
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 888888886 788888887766654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.077 Score=43.33 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=21.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003028 373 ARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQV 423 (856)
Q Consensus 373 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~ 423 (856)
.|++++|.++|+.+.... +-+...+..+..+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444331 12344444444444444444444444444443
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.00 E-value=3.2 Score=42.29 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=28.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGL--SPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~--~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
.+...|++.+|.+.|+.+...-. +--....-.++.+|.+.|+++.|...|+++.+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455666666666666655311 111233344555666666666666666665543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.81 E-value=3.1 Score=42.36 Aligned_cols=172 Identities=11% Similarity=0.071 Sum_probs=75.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003028 367 VGILGRARQFGAINKLLDQMVRDGCQ--PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAG 444 (856)
Q Consensus 367 i~~~~k~g~~~~A~~lf~~m~~~g~~--pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g 444 (856)
...+...|++++|.+.|+.+...... --....-.++.++-+.|++++|...|+++.+.-.......+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 33445667777777777777654110 1123344555666677777777777777655421111122222222222111
Q ss_pred CHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003028 445 FLDVAMDMYKKMQAAGLSPD-------TFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQ 517 (856)
Q Consensus 445 ~~~~A~~l~~~m~~~g~~pd-------~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~ 517 (856)
...... ....| ...+..+|.-|=......+|...+..+.+. =...--.+...|.+.|.+.
T Consensus 92 ~~~~~~---------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 92 QIPGIL---------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HH
T ss_pred hCccch---------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHH
Confidence 111100 00001 122333444444455555555555554431 0011112345566677777
Q ss_pred HHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHH
Q 003028 518 SALKLYRDMQNAGFEPD----KVTYSIVMEVLGHCGYLDE 553 (856)
Q Consensus 518 ~A~~ll~~M~~~gi~pd----~~ty~~ll~a~~~~g~~~~ 553 (856)
.|..-++.+.+.- |+ ......++.++.+.|..+.
T Consensus 159 aA~~r~~~v~~~y--p~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 159 AAIIRFQYVIENY--PDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhCChHH
Confidence 7776666666542 22 1233455556666665553
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.77 E-value=4.8 Score=41.92 Aligned_cols=129 Identities=14% Similarity=0.101 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-----H
Q 003028 399 NRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVII-----N 473 (856)
Q Consensus 399 ~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li-----~ 473 (856)
+.++.++.-.+.+.-.++++.+..+..-+.++.....|++.-.+.|+.+.|...|++..+..-..|..+++.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 33444444445555555555555554444455555555555555555555555555544332222333333222 2
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 474 CLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQN 528 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 528 (856)
.|.-.+++..|...|++....... |...-|.-.-+..-.|+..+|++.+..|..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 233344555555555554433211 333333333333334555555555555554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.77 E-value=7.9 Score=42.44 Aligned_cols=109 Identities=19% Similarity=0.178 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 003028 503 YNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGK 582 (856)
Q Consensus 503 y~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k 582 (856)
.+..|.-+...|+...|.++-.+.. .||..-|...+.+++..+++++.+++-.. +-.+.-|..++.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3444555556666666655544432 35666666667777777777666554322 1133556666777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 583 AGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGM 631 (856)
Q Consensus 583 ~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M 631 (856)
.|+..+|..+..++. +..-+..|.+.|++.+|.+.-.+.
T Consensus 250 ~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777777766665521 244556666777777766654433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.13 Score=42.17 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=46.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 003028 569 DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVG-QLSDAYHLLQGMLN 633 (856)
Q Consensus 569 d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g-~~e~A~~l~~~M~~ 633 (856)
+..+|..+...+...|++++|...|++..+.. +-+...|..+..+|...| ++++|++.|++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34567777777777888888888888777653 335667777777788887 67888887777665
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.2 Score=41.04 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAG-FLDVAMDMYKKM 456 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g-~~~~A~~l~~~m 456 (856)
.|..+...+.+.|++++|+..|++..+.. +-+...|..+..+|.+.| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 34444444444444444444444444332 223333444444444444 344444444443
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.35 E-value=10 Score=42.00 Aligned_cols=164 Identities=14% Similarity=0.154 Sum_probs=104.9
Q ss_pred CCHHHHHHH-HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 463 PDTFTYSVI-INCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIAL--QAKARNYQSALKLYRDMQNAGFEPDKVTYS 539 (856)
Q Consensus 463 pd~~ty~~L-i~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~--~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~ 539 (856)
|...+|..| ..++.-.|+.++|.++-....+.. ....+..++++ +.-.++.+.|...|.+....+ |+...--
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence 333444433 356677888888888777666541 22233334433 345677888888888776643 4422211
Q ss_pred ---HH----------HHHHHhcCChHHHHHHHHHHHHc---CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003028 540 ---IV----------MEVLGHCGYLDEAEAVFAEMRRK---NWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRP 603 (856)
Q Consensus 540 ---~l----------l~a~~~~g~~~~A~~l~~~m~~~---g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~p 603 (856)
.. -+-..+.|++..|.+.+.+.+.. +..++...|........+.|+.++|..-.++....
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---- 316 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---- 316 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----
Confidence 11 12345778999999999988754 44566777777777888899999999888887652
Q ss_pred CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003028 604 NVP---TCNSLLSAFLRVGQLSDAYHLLQGMLNLG 635 (856)
Q Consensus 604 d~~---t~n~Li~ay~~~g~~e~A~~l~~~M~~~g 635 (856)
|.. .|..-..++...++|++|.+-|++..+..
T Consensus 317 D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 317 DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 322 23333445556778888888888877643
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.31 E-value=1.1 Score=49.64 Aligned_cols=146 Identities=16% Similarity=0.214 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 003028 395 VVTYNRLIHSYGRANYLNEALDVFKQMQVVG-CEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTY-SVII 472 (856)
Q Consensus 395 ~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g-~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty-~~Li 472 (856)
...|..+|+...+..-++.|..+|-+..+.| +.+++..++++|.-++ .|+..-|..+|+-=... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3445555555555555666666666665555 4455555666555444 34555555555543322 2233332 3444
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 473 NCLGKAGHLQAAHQLFCEMVNQGCIPN--LVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLG 546 (856)
Q Consensus 473 ~~y~k~g~~~~A~~lf~~m~~~g~~pd--~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~ 546 (856)
..+...++-+.|..+|+.-..+ +..+ ...|..||+.-..-|+...+..+=+.|... .|...+...+..-|.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 5555556666666666533221 0011 335666666666666666666665555543 344434344444333
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.52 Score=44.10 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 534 DKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLS 613 (856)
Q Consensus 534 d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ 613 (856)
|..++..+|-++++.|+++....+++..= |+.++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566666666666666666666654332 22221100 0000 1113346789999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCC
Q 003028 614 AFLRVGQLSDAYHLLQGMLN-LGLKPSLQTYTLLLSCCTEARS 655 (856)
Q Consensus 614 ay~~~g~~e~A~~l~~~M~~-~g~~Pd~~ty~~Ll~a~~~~g~ 655 (856)
+|+..|++..|+++.+...+ .++..+..++..|++-+...-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999998876 5788888999999987654443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.68 Score=49.27 Aligned_cols=58 Identities=10% Similarity=0.106 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNV----VTYNRLIHSYGRANYLNEALDVFKQMQ 422 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~----~ty~~Li~~~~~~g~~~~A~~lf~~m~ 422 (856)
|...+..+.+.|++++|...|+.+.+. .|+. ..+-.+...|...|++++|...|+.+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444434445555555555555443 1221 233344444444555555555555444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.24 E-value=6.3 Score=39.04 Aligned_cols=102 Identities=13% Similarity=0.064 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHH
Q 003028 427 EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCI-PNLVTYNI 505 (856)
Q Consensus 427 ~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~-pd~~ty~~ 505 (856)
.|+..--..|..++.+.|++.+|...|++....-+.-|....-.+.++....+++.+|...++.+.+.... .+..+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555555566666666666666666666554333445555555556666666666666666655543200 01122333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 003028 506 MIALQAKARNYQSALKLYRDMQN 528 (856)
Q Consensus 506 Li~~~~~~g~~~~A~~ll~~M~~ 528 (856)
+...|.-.|++.+|...|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 44555555555555555555554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.26 Score=40.76 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=47.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003028 578 DLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTY 643 (856)
Q Consensus 578 ~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty 643 (856)
..|.+.+++++|.++++.+.... +.+...|......|.+.|++++|.+.|++.++ ..|+..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHHH
Confidence 46778888888888888888753 44667777788888888888888888888886 44554443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.75 Score=48.68 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=64.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQS 518 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~ 518 (856)
-+.+.+++.+|+..|.+.++. .+-|.+.|..-..+|++.|.++.|.+=.+.-...... -..+|..|-.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 345667777777777777775 2345566666677777777777777666655543111 34467777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH
Q 003028 519 ALKLYRDMQNAGFEPDKVTYSI 540 (856)
Q Consensus 519 A~~ll~~M~~~gi~pd~~ty~~ 540 (856)
|++.|++.++ +.|+-.+|-.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHH
Confidence 7777777665 4566555543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.03 E-value=6.4 Score=45.71 Aligned_cols=87 Identities=18% Similarity=0.209 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---------
Q 003028 536 VTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVP--------- 606 (856)
Q Consensus 536 ~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~--------- 606 (856)
.+...+...+-+...+..|-++|..|-. ...+++.....+++++|..+-+...+ +.||+.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhh
Confidence 3444444445566677778888876643 24667778888888888888777665 234432
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 607 --TCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 607 --t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
-|...-.+|.+.|+-.+|..+++++..
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 233344567777777788777777654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.34 Score=46.41 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVF 418 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf 418 (856)
.|..+|.+|...|+..+|+++|
T Consensus 98 ~~~~lm~~~~~~g~~~~A~~~Y 119 (146)
T PF03704_consen 98 AYRLLMRALAAQGRRAEALRVY 119 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHH
Confidence 3333333333333333333333
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.89 E-value=1.2 Score=51.07 Aligned_cols=129 Identities=14% Similarity=0.233 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG 476 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~ 476 (856)
..+.++..+-+.|..+.|+++-..-. .-.....+.|+++.|.++.+++ .+...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 34555555555555555555433221 1123344555555555543322 24445555555555
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003028 477 KAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEA 556 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~ 556 (856)
+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+.....| -++....++...|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 55555555555554432 3444444555555544444444444333 12333333344444444444
Q ss_pred HH
Q 003028 557 VF 558 (856)
Q Consensus 557 l~ 558 (856)
++
T Consensus 424 lL 425 (443)
T PF04053_consen 424 LL 425 (443)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.88 E-value=7.4 Score=38.56 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003028 503 YNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 503 y~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~ 563 (856)
--.|..++...|++.+|...|.+...--+.-|......+.++....++..+|...++.+.+
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e 152 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME 152 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence 3334444444444444444444443322223333333444444444444444444444433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.26 Score=39.84 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=22.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 369 ILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQ 422 (856)
Q Consensus 369 ~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~ 422 (856)
.+.+.|++++|...|+.+.+.. +-+...|..+..++.+.|++++|..+|+++.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444432 1133344444444444444444444444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.34 Score=46.37 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 003028 572 VYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN-----LGLKPSLQTYT 644 (856)
Q Consensus 572 ~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~-----~g~~Pd~~ty~ 644 (856)
+...++..+...|+++.|..+++.+.... +-|...|..+|.+|...|+..+|+++|+++.. .|+.|+..|-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 55667777888899999999998888753 55778889999999999999999988887753 57888876543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=1.1 Score=47.56 Aligned_cols=61 Identities=11% Similarity=0.041 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 573 YGLLVDLWGKAGNVRKAWEWYEAMLQAG--LRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 573 y~~Li~~~~k~g~~~~A~~l~~~m~~~g--~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+-.+...|...|++++|...|+.+.+.- -+.....+-.+...|...|+.++|..+|+++++
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444555555555555544320 011122333334444455555555555555544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.74 Score=43.09 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 003028 462 SPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ-GCIPNLVTYNIMIA 508 (856)
Q Consensus 462 ~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~-g~~pd~~ty~~Li~ 508 (856)
.|+..+..+++.+|+..|++..|.++++...+. +++.+...|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 444555555555555555555555555444432 33334444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.55 E-value=2.7 Score=39.88 Aligned_cols=124 Identities=16% Similarity=0.171 Sum_probs=58.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003028 470 VIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCG 549 (856)
Q Consensus 470 ~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g 549 (856)
.++..+...+.......+++.+...+. .+...+|.++..|++... .+.++.+.. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 344445555555555555555555442 345555556665555422 233333331 112233344555555556
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 550 YLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKA-GNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFL 616 (856)
Q Consensus 550 ~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~-g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~ 616 (856)
.++++..++..+.. +...+..+... ++++.|.+++.+- -+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 56565555554421 22222323333 5566666655541 24555666655544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.61 Score=50.98 Aligned_cols=129 Identities=17% Similarity=0.066 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH----cCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCCCHHH
Q 003028 538 YSIVMEVLGHCGYLDEAEAVFAEMRR----KNWV-PDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQ----AG-LRPNVPT 607 (856)
Q Consensus 538 y~~ll~a~~~~g~~~~A~~l~~~m~~----~g~~-pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~----~g-~~pd~~t 607 (856)
|..|-+.|.-.|+++.|...++.-.. .|-+ .....+..|.+++.-.|+++.|.+.|+.-.. .| -.....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 44444444455666666665554221 1211 1223455666666666666666666654331 11 1123344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 003028 608 CNSLLSAFLRVGQLSDAYHLLQGMLN-----LGLKPSLQTYTLLLSCCTEARSPYDMGFCHELM 666 (856)
Q Consensus 608 ~n~Li~ay~~~g~~e~A~~l~~~M~~-----~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m 666 (856)
+-.|...|.-..++++|+.++.+-+. ....-....|.+|-.++...|..+.|..+.+.-
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 55566666666666666666654432 112223456666666666666655555544433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.96 Score=47.26 Aligned_cols=107 Identities=17% Similarity=0.299 Sum_probs=55.0
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003028 355 GFKHDEHTYTTMVGILGRA-----RQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD 429 (856)
Q Consensus 355 g~~pd~~~y~~Li~~~~k~-----g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd 429 (856)
+-+.|-.+|-+++..+... +.++-....+..|.+.|+..|..+|+.||+.+-+.. +.|.
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~ 125 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ 125 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH
Confidence 3445666777766666433 455555556666666666666666666665443322 1111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 003028 430 RVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGH 480 (856)
Q Consensus 430 ~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~ 480 (856)
.. +..+.--|- .+-+-+++++++|...|+.||-.+-..|+++|++.+.
T Consensus 126 nv-fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 126 NV-FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HH-HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11 111111111 1223455666666666666666666666666665554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.57 Score=48.88 Aligned_cols=116 Identities=16% Similarity=0.293 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHhhhCh--------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003028 322 NYSMDAYQANQVLKQLQDH--------TVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQP 393 (856)
Q Consensus 322 ~~~~~~~~~~~vL~~l~~~--------~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~p 393 (856)
+-.-|..++...+..++.. +-....+..|. ..|+..|..+|+.||+++-|..-. |
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~-eyGVerDl~vYk~LlnvfPKgkfi----------------P 124 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMK-EYGVERDLDVYKGLLNVFPKGKFI----------------P 124 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH-HhcchhhHHHHHHHHHhCcccccc----------------c
Confidence 3345556665555555322 11222233443 478888888888888876544321 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF-LDVAMDMYKKMQ 457 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~-~~~A~~l~~~m~ 457 (856)
... +....--|- .+-+-+++++++|...|+.||-.+-..|++++.+.+. ..+...++-.|-
T Consensus 125 ~nv-fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 125 QNV-FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHH-HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 211 222222222 2345678899999999999999999999999988775 334444444443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.07 E-value=3.5 Score=39.00 Aligned_cols=84 Identities=14% Similarity=0.276 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003028 365 TMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAG 444 (856)
Q Consensus 365 ~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g 444 (856)
.++..+.+.+....+..+++.+...+. .+...++.+|..|++.+ ..+.++.+.. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 455555555566666666666555442 45555666666665542 2333344332 122233344555666666
Q ss_pred CHHHHHHHHHHH
Q 003028 445 FLDVAMDMYKKM 456 (856)
Q Consensus 445 ~~~~A~~l~~~m 456 (856)
.++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666665554
|
|
| >smart00463 SMR Small MutS-related domain | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.42 Score=40.72 Aligned_cols=77 Identities=36% Similarity=0.540 Sum_probs=56.2
Q ss_pred eeeccccccchhhHHHHHHHHHHHHHHHHHcCCCCCceeeeeeccccCCcccchHHHHHHHHHHhhcCCCCcccCCCceE
Q 003028 754 WLINLHVMSDGTAVIALSRTLAWFRKQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLHMFSFPFFTENGNSGC 833 (856)
Q Consensus 754 w~~~~~~l~~g~a~~g~~~~l~~~~~~m~~~g~~Pd~it~i~~l~~~~~~~~~~~l~~a~~~ll~~~~~pf~~~~~~~gc 833 (856)
|.+|+|.|....|...+. .|..++...+.. ..+.+|+|.|.++. .+...+++++..++....++|.+. .+.|+
T Consensus 2 ~~lDLHG~~~~eA~~~l~----~~l~~~~~~~~~-~~~~II~G~G~~s~-~g~~~i~~~l~~~l~~~~~~~~~~-~~~G~ 74 (80)
T smart00463 2 WSLDLHGLTVEEALTALD----KFLNNARLKGLE-QKLVIITGKGKHSL-GGKSGVKPALKEHLRVESFRFAEE-GNSGV 74 (80)
T ss_pred CeEEcCCCCHHHHHHHHH----HHHHHHHHcCCC-ceEEEEEcccCCCc-cchhhHHHHHHhchhhcccccCCC-CCCeE
Confidence 788999998877765544 444566666543 56889999998876 345678999888887666777665 78899
Q ss_pred EEec
Q 003028 834 FVGC 837 (856)
Q Consensus 834 ~v~~ 837 (856)
++..
T Consensus 75 ~~v~ 78 (80)
T smart00463 75 LVVK 78 (80)
T ss_pred EEEE
Confidence 8743
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=92.80 E-value=14 Score=41.22 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003028 603 PNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNL 634 (856)
Q Consensus 603 pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~ 634 (856)
.+-..+.+++.++.-.|+.++|.+..++|...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 44555667777777788888888888887763
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.69 Score=38.17 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=19.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 406 GRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQ 457 (856)
Q Consensus 406 ~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~ 457 (856)
.+.+++++|+++++.+...+ +.+...|.....++.+.|++++|.+.|+...
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33344444444444443332 2233333333333344444444444444433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.57 E-value=2.1 Score=49.05 Aligned_cols=157 Identities=10% Similarity=0.096 Sum_probs=81.5
Q ss_pred HHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 003028 404 SYGRANYLNEALDVFKQMQ-VVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQ 482 (856)
Q Consensus 404 ~~~~~g~~~~A~~lf~~m~-~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~ 482 (856)
...-.++++++.++...-. -..+ ...-.+.++.-+-+.|..+.|+++-.+-. .-.....++|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 3344677777766664111 1111 13346666666667777777776644322 1234455667777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003028 483 AAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMR 562 (856)
Q Consensus 483 ~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~ 562 (856)
.|.++.++. .+...|..|.......|+++-|.+.|.+.. -|..|+-.|.-.|+.+...++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHH
Confidence 776655443 255567777777777777777777666543 24455555666666666666665555
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003028 563 RKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEA 595 (856)
Q Consensus 563 ~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~ 595 (856)
..| -++....++...|++++..+++.+
T Consensus 401 ~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred Hcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 544 145555555556666666655543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.48 E-value=2 Score=47.17 Aligned_cols=132 Identities=15% Similarity=0.085 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----HHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cC-CCCCHh
Q 003028 502 TYNIMIALQAKARNYQSALKLYRDM----QNAGFEP-DKVTYSIVMEVLGHCGYLDEAEAVFAEMRR----KN-WVPDEP 571 (856)
Q Consensus 502 ty~~Li~~~~~~g~~~~A~~ll~~M----~~~gi~p-d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~----~g-~~pd~~ 571 (856)
.|..|-..|.-.|+++.|+...+.- ++.|-.. ....+..+-+++.-.|+++.|.+.|+.... .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4556666677788999988776532 2223221 234677888888888999999988876542 22 123455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 572 VYGLLVDLWGKAGNVRKAWEWYEAMLQA-----GLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 572 ~y~~Li~~~~k~g~~~~A~~l~~~m~~~-----g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
..-.|.+.|.-..++++|..++.+-... ...-....|..|..+|...|..++|+.+...-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6667788888888899999888764321 1123567889999999999999999998877664
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.43 E-value=22 Score=39.93 Aligned_cols=148 Identities=17% Similarity=0.235 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH-HHHH
Q 003028 500 LVTYNIMIALQAKARNYQSALKLYRDMQNAG-FEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVY-GLLV 577 (856)
Q Consensus 500 ~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g-i~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y-~~Li 577 (856)
...|..+|.+-.+..-.+.|..+|-+..+.+ +.+++..++++|..++ .|+...|..+|+.-...- ||..+| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHH
Confidence 4456677777777777888888998888888 5677888888888776 577888888888755532 343333 4556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003028 578 DLWGKAGNVRKAWEWYEAMLQAGLRPN--VPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEA 653 (856)
Q Consensus 578 ~~~~k~g~~~~A~~l~~~m~~~g~~pd--~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~ 653 (856)
.-+...++-+.|..+|+.-.++ +..+ ...|..+|..=..-|++..|..+-+.|.+ +.|...+...+.+-|.-.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik 548 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhh
Confidence 6677888888899888855432 1222 46788888888888888888888888876 567776666666665443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.43 E-value=5 Score=42.75 Aligned_cols=99 Identities=13% Similarity=0.057 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHhhHHH
Q 003028 499 NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHC---GYLDEAEAVFAEMRRKNWVPDEPVYGL 575 (856)
Q Consensus 499 d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~---g~~~~A~~l~~~m~~~g~~pd~~~y~~ 575 (856)
|...|-.|-..|...|+++.|...|....+.- .++...+..+.+++... ..-.++..+|+++.+.. .-|+.....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 66677777777777777777777777665531 12233344444443222 23345566666665543 224444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 576 LVDLWGKAGNVRKAWEWYEAMLQA 599 (856)
Q Consensus 576 Li~~~~k~g~~~~A~~l~~~m~~~ 599 (856)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555666666666666666553
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.28 Score=41.30 Aligned_cols=63 Identities=27% Similarity=0.486 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 571 PVYGLLVDLWGKAGNVRKAWEWYEAMLQA--GLR---PN-VPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 571 ~~y~~Li~~~~k~g~~~~A~~l~~~m~~~--g~~---pd-~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.+|+.+...|...|++++|+..|++..+. ... |+ ..+++.+...|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666677777777777777777766532 011 22 45677777777788888888887776653
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.16 E-value=19 Score=42.96 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQ----PNVVTYNRLIHSYGRANYLNEALDVFKQMQ 422 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~----pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~ 422 (856)
..+|..+..-...+|+++.|..+++.=+..+.. .+..-+..-+.-..+.|+.+....++-.|.
T Consensus 507 ~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 507 GISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred ceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 346888888888899999999988643322110 011223444555566666666666665554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.12 E-value=4.5 Score=43.85 Aligned_cols=127 Identities=16% Similarity=0.365 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCC-
Q 003028 411 LNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK--A----GFLDVAMDMYKKMQAAGL---SPDTFTYSVIINCLGKAGH- 480 (856)
Q Consensus 411 ~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k--~----g~~~~A~~l~~~m~~~g~---~pd~~ty~~Li~~y~k~g~- 480 (856)
+++.+++++.|.+.|+..+..+|-+..-.... . ....+|..+|+.|++... .++...+.+|+.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455566677777777776666554333333 1 134566777777776532 2344555555443 2222
Q ss_pred ---HHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 481 ---LQAAHQLFCEMVNQGCIPNLV--TYNIMIALQAKARN--YQSALKLYRDMQNAGFEPDKVTYS 539 (856)
Q Consensus 481 ---~~~A~~lf~~m~~~g~~pd~~--ty~~Li~~~~~~g~--~~~A~~ll~~M~~~gi~pd~~ty~ 539 (856)
.+.++.+|+.+.+.|+..+-. ....++...-.... ...+.++++.+.+.|+++....|.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccccc
Confidence 345566666666666544322 22222222211111 345666777777777666655444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.09 E-value=13 Score=36.43 Aligned_cols=200 Identities=20% Similarity=0.164 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 003028 431 VTYCTLIDIHAKAGFLDVAMDMYKKMQAA-GLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIA- 508 (856)
Q Consensus 431 ~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~-g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~- 508 (856)
..+......+...+.+..+...+...... ........+..+...+...+.+..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444444555555555444444331 122233344444444444445555555555544432221 111111122
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 003028 509 LQAKARNYQSALKLYRDMQNAGF--EPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNV 586 (856)
Q Consensus 509 ~~~~~g~~~~A~~ll~~M~~~gi--~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~ 586 (856)
.+...|+++.|...|.+...... ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45556666666666665533111 0112222233333445556666666665555432111244555555556666666
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 587 RKAWEWYEAMLQAGLRPN-VPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 587 ~~A~~l~~~m~~~g~~pd-~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+.|...+...... .|+ ...+..+...+...+..+++...+.+...
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666543 222 33333444444455556666666665554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=91.96 E-value=24 Score=39.35 Aligned_cols=173 Identities=16% Similarity=0.131 Sum_probs=90.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 399 NRLIHSYGRANYLNEALDVFKQMQVVG---CEPDRVTYCTLIDIHAK---AGFLDVAMDMYKKMQAAGLSPDTFTYSVII 472 (856)
Q Consensus 399 ~~Li~~~~~~g~~~~A~~lf~~m~~~g---~~pd~~ty~~Ll~~~~k---~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li 472 (856)
..|+-.|....+++...++++.|...- +.-....-....-++.+ .|+.++|++++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344455777778888888888776531 11111212223334445 677777777777755555556666666655
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--
Q 003028 473 NCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY-- 550 (856)
Q Consensus 473 ~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~-- 550 (856)
..|-.. |. +.+.. |... .++|+..|.+.-+. .||..+=..++..+...|.
T Consensus 225 RIyKD~---------~~---~s~~~-d~~~-------------ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~ 276 (374)
T PF13281_consen 225 RIYKDL---------FL---ESNFT-DRES-------------LDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDF 276 (374)
T ss_pred HHHHHH---------HH---HcCcc-chHH-------------HHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcc
Confidence 444221 11 11111 2111 45566666554432 2332221122222222222
Q ss_pred --hHHHHHHH---H-HHHHcC---CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 551 --LDEAEAVF---A-EMRRKN---WVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA 599 (856)
Q Consensus 551 --~~~A~~l~---~-~m~~~g---~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~ 599 (856)
-.+..++- . .+.++| -..+-..+.+++.++.-.|+.++|.+..++|...
T Consensus 277 ~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 277 ETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 11222222 1 111223 2346667788899999999999999999999864
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.5 Score=49.45 Aligned_cols=62 Identities=18% Similarity=0.047 Sum_probs=31.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 570 EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNV----PTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 570 ~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~----~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
...++.+..+|.+.|++++|...|++..+. .|+. .+|..+..+|...|+.++|++.|++.++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555554442 2332 2355555555555555555555555554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.83 E-value=7.3 Score=36.43 Aligned_cols=59 Identities=20% Similarity=0.351 Sum_probs=24.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003028 541 VMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAG 600 (856)
Q Consensus 541 ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g 600 (856)
.+..+...|.-++..+++.++.+ +-.+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 34444444555555555544443 223444444444455555555555555554444444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.43 Score=40.11 Aligned_cols=60 Identities=28% Similarity=0.426 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVV----GC-EPD-RVTYCTLIDIHAKAGFLDVAMDMYKKM 456 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~----g~-~pd-~~ty~~Ll~~~~k~g~~~~A~~l~~~m 456 (856)
+|+.+...|...|++++|++.|++..+. |- .|+ ..+++.+..+|...|++++|++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555544321 10 011 334445555555555555555555544
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=91.41 E-value=4.4 Score=45.83 Aligned_cols=65 Identities=9% Similarity=-0.023 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 358 HDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNV----VTYNRLIHSYGRANYLNEALDVFKQMQVV 424 (856)
Q Consensus 358 pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~----~ty~~Li~~~~~~g~~~~A~~lf~~m~~~ 424 (856)
.+...|+.+..+|.+.|++++|...|+...+. .|+. .+|..+..+|...|+.++|++.|++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35667888888888888888888888887764 4553 34777778888888888888888777653
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.31 E-value=13 Score=41.37 Aligned_cols=274 Identities=16% Similarity=0.061 Sum_probs=147.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003028 365 TMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAG 444 (856)
Q Consensus 365 ~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g 444 (856)
..-..+.+...+..|+..+....+.. +.+..-|..-...+..-+++++|+--.+.-.+.. .-....+.-.-.++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhH
Confidence 34566667777777777777777653 2344455555556666667777666655544321 111123333333444444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHH-HHHHHHcCCHHHHHHH
Q 003028 445 FLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQG-CIPNLVTYNIM-IALQAKARNYQSALKL 522 (856)
Q Consensus 445 ~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g-~~pd~~ty~~L-i~~~~~~g~~~~A~~l 522 (856)
+..+|.+.|+ +...| ....|+..++.+.... -+|...+|-.| ...+.-.|++++|...
T Consensus 132 ~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 132 DLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 4444444443 11111 1112222222222221 12334444443 2456678888888877
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH---HH----------HHHhcCCHH
Q 003028 523 YRDMQNAGFEPDKVTYSIVMEV--LGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLL---VD----------LWGKAGNVR 587 (856)
Q Consensus 523 l~~M~~~gi~pd~~ty~~ll~a--~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~L---i~----------~~~k~g~~~ 587 (856)
--...+.. + ...+...+++ +--.++.+.|...|++....+ |+-..-..+ .+ -..+.|++.
T Consensus 192 a~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 192 AIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 77666542 2 2234445544 334577888888888776543 443332222 11 234668888
Q ss_pred HHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcCCcchHHH
Q 003028 588 KAWEWYEAMLQA---GLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLL---SCCTEARSPYDMGF 661 (856)
Q Consensus 588 ~A~~l~~~m~~~---g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll---~a~~~~g~~~~a~~ 661 (856)
.|.+.|.+.+.. ...++...|........+.|+.++|+.-.++.+. .|..-...++ .++...++|+++.+
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877642 3456667777777788888888888888777764 3332222222 23445566666665
Q ss_pred HHHHHHHc
Q 003028 662 CHELMAVS 669 (856)
Q Consensus 662 l~~~m~~~ 669 (856)
-++...+.
T Consensus 343 d~~~a~q~ 350 (486)
T KOG0550|consen 343 DYEKAMQL 350 (486)
T ss_pred HHHHHHhh
Confidence 55544433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.22 E-value=6.6 Score=42.56 Aligned_cols=129 Identities=16% Similarity=0.305 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCC-
Q 003028 446 LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGK--AG----HLQAAHQLFCEMVNQGC---IPNLVTYNIMIALQAKARN- 515 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k--~g----~~~~A~~lf~~m~~~g~---~pd~~ty~~Li~~~~~~g~- 515 (856)
+++.+.+++.|++.|+.-+..+|-+..-.... .. ....|..+|+.|.+... .++-..+.+|+.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667789999999998888777664433333 22 35678888888887632 2344556666544 2233
Q ss_pred ---HHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHhhHHHH
Q 003028 516 ---YQSALKLYRDMQNAGFEPDKV--TYSIVMEVLGHCGY--LDEAEAVFAEMRRKNWVPDEPVYGLL 576 (856)
Q Consensus 516 ---~~~A~~ll~~M~~~gi~pd~~--ty~~ll~a~~~~g~--~~~A~~l~~~m~~~g~~pd~~~y~~L 576 (856)
.+.+..+|+.+.+.|+..+.. ..+.++..+..... ...+.++++.+.+.++++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 245667777777767655422 22223322221111 33566667777777766665555544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.17 E-value=24 Score=37.83 Aligned_cols=102 Identities=6% Similarity=0.008 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHccCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 466 FTYSVIINCLGKAGHLQ---AAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVM 542 (856)
Q Consensus 466 ~ty~~Li~~y~k~g~~~---~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll 542 (856)
.++..++.+|...+..+ +|.++++.+.+.... ....+-.-+..+.+.++.+++.+.+.+|...-..+ ...+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~-e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS-ESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc-cchHHHHH
Confidence 34555666666666543 445555555433211 23334344555555777777777777776652212 22344444
Q ss_pred HHH---HhcCChHHHHHHHHHHHHcCCCCCH
Q 003028 543 EVL---GHCGYLDEAEAVFAEMRRKNWVPDE 570 (856)
Q Consensus 543 ~a~---~~~g~~~~A~~l~~~m~~~g~~pd~ 570 (856)
..+ .. .....+...+..+....+.|..
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 433 22 2234555555555544444443
|
It is also involved in sporulation []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.07 E-value=26 Score=44.01 Aligned_cols=36 Identities=8% Similarity=0.032 Sum_probs=20.0
Q ss_pred cCCCCCceeeeeeccccCCcccchHHHHHHHHHHhh
Q 003028 784 SGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLHM 819 (856)
Q Consensus 784 ~g~~Pd~it~i~~l~~~~~~~~~~~l~~a~~~ll~~ 819 (856)
.+++|+...++.+|.+++.-..+..+..+.+.++..
T Consensus 1181 e~~r~E~~~Ll~~l~~~g~~eqa~~Lq~~f~ev~~~ 1216 (1265)
T KOG1920|consen 1181 ENIRNELKRLLEVLVTFGMDEQARALQKAFDEVLQA 1216 (1265)
T ss_pred hcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 456666666666666666544444455555544443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.98 E-value=8.4 Score=41.10 Aligned_cols=101 Identities=11% Similarity=0.043 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCCHHHH
Q 003028 427 EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAG---HLQAAHQLFCEMVNQGCIPNLVTY 503 (856)
Q Consensus 427 ~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g---~~~~A~~lf~~m~~~g~~pd~~ty 503 (856)
+-|...|-.|-..|...|+++.|..-|.+..+. -.++...+..+..++.... +-.++..+|+++...... |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 334455555555555555555555555555443 1223333333333322211 234455555555543221 44444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003028 504 NIMIALQAKARNYQSALKLYRDMQNA 529 (856)
Q Consensus 504 ~~Li~~~~~~g~~~~A~~ll~~M~~~ 529 (856)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44455555555555555555555544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=90.33 E-value=9.2 Score=44.41 Aligned_cols=164 Identities=13% Similarity=0.170 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC-----CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDG-CQP-----NVVTYNRLIHSYGR----ANYLNEALDVFKQMQVVGCEPDRV 431 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g-~~p-----d~~ty~~Li~~~~~----~g~~~~A~~lf~~m~~~g~~pd~~ 431 (856)
....++...+-.|+-+.+.+++.+-.+.+ +.- -...|+.++..++. ....+.|.++++.+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 35567777777777777777776655421 111 12235555544443 35678888888888765 46655
Q ss_pred HHHHH-HHHHHHcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 432 TYCTL-IDIHAKAGFLDVAMDMYKKMQAAGL---SPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMI 507 (856)
Q Consensus 432 ty~~L-l~~~~k~g~~~~A~~l~~~m~~~g~---~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li 507 (856)
.|... -..+...|++++|++.|++...... +.....+--+.-.+.-..++++|.+.|..+.+..-- +...|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHH
Confidence 55443 3556677888888888887653211 122344445666778888999999999988875322 334444443
Q ss_pred H-HHHHcCCH-------HHHHHHHHHHHH
Q 003028 508 A-LQAKARNY-------QSALKLYRDMQN 528 (856)
Q Consensus 508 ~-~~~~~g~~-------~~A~~ll~~M~~ 528 (856)
. ++...|+. ++|.++|.+...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3 33456666 888888887643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.73 E-value=21 Score=34.82 Aligned_cols=223 Identities=17% Similarity=0.082 Sum_probs=152.9
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 443 AGFLDVAMDMYKKMQAAGLS-PDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ-GCIPNLVTYNIMIALQAKARNYQSAL 520 (856)
Q Consensus 443 ~g~~~~A~~l~~~m~~~g~~-pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~-g~~pd~~ty~~Li~~~~~~g~~~~A~ 520 (856)
.+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...+.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35556666666666554322 13677888888999999999999999887652 22345667777788888888999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 521 KLYRDMQNAGFEPDKVTYSIVME-VLGHCGYLDEAEAVFAEMRRKNW--VPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 521 ~ll~~M~~~gi~pd~~ty~~ll~-a~~~~g~~~~A~~l~~~m~~~g~--~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
+.+.........+.. ....... .+...|+++.+...+........ ......+......+...++.+.|...+....
T Consensus 116 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDPDL-AEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 999988875544422 2222333 78899999999999999865221 1233444455555778899999999999998
Q ss_pred HcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003028 598 QAGLRP-NVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS-LQTYTLLLSCCTEARSPYDMGFCHELMAVS 669 (856)
Q Consensus 598 ~~g~~p-d~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd-~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~ 669 (856)
... .. ....+..+...+...++++.|...+...... .|+ ...+..+...+...+..+.+...+......
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 752 23 4678888999999999999999999998873 444 333444444444555555555555444433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=89.61 E-value=17 Score=35.55 Aligned_cols=88 Identities=15% Similarity=0.023 Sum_probs=53.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003028 404 SYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQA 483 (856)
Q Consensus 404 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~ 483 (856)
-+-..|++++|..+|+-+-..+ .-+..-|..|..+|-..+++++|...|......+. -|...+--+-.+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 3445677777777777665543 23344455555556666777777777766554432 234444455666677777777
Q ss_pred HHHHHHHHHH
Q 003028 484 AHQLFCEMVN 493 (856)
Q Consensus 484 A~~lf~~m~~ 493 (856)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777776665
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.58 E-value=18 Score=35.55 Aligned_cols=134 Identities=18% Similarity=0.198 Sum_probs=64.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 003028 416 DVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQG 495 (856)
Q Consensus 416 ~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g 495 (856)
++++.+.+.+++|+...|..+++.+.+.|++.... .++..++-+|.......+-.+.. ....+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 34444455566666666666666666666654333 33334444444444333322222 122233333333321
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003028 496 CIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 496 ~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~ 563 (856)
=...+..+++.+...|++-+|+++.+..... +......++++..+.+|...-..++.-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0013555666666777777777666654221 111223455555566665555555555444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=89.42 E-value=8.9 Score=37.41 Aligned_cols=87 Identities=15% Similarity=0.017 Sum_probs=49.2
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 003028 475 LGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEA 554 (856)
Q Consensus 475 y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A 554 (856)
+-..|++++|..+|.-+.-.+.. +..-|..|...+-..+++++|+..|......+. -|...+-..-.++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 44566777777777666554332 444455566666666667777766665544322 1222233345556666666666
Q ss_pred HHHHHHHHH
Q 003028 555 EAVFAEMRR 563 (856)
Q Consensus 555 ~~l~~~m~~ 563 (856)
+..|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666666655
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.38 E-value=34 Score=36.71 Aligned_cols=121 Identities=12% Similarity=0.120 Sum_probs=56.2
Q ss_pred hChhHHHHHHHHHHHhC-CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCCH-----HH
Q 003028 338 QDHTVALGFFNWLRRQA-GFKHDE------HTYTTMVGILGRARQFGAINKLLDQMVRD--------GCQPNV-----VT 397 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~-g~~pd~------~~y~~Li~~~~k~g~~~~A~~lf~~m~~~--------g~~pd~-----~t 397 (856)
++.+.|..++..+.... ...|+. ..||.-...+.+..+++.|...+++..+- ...++. .+
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~i 86 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSI 86 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHH
Confidence 46666777777665433 233332 23444444443333666665555443321 111222 23
Q ss_pred HHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003028 398 YNRLIHSYGRANYLN---EALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 398 y~~Li~~~~~~g~~~---~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~ 459 (856)
+..|+.+|...+..+ +|..+++.+.... .-...+|..-+..+.+.++.+.+.+++.+|+..
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 445555555555432 3444444443321 112334444455555555666666666666554
|
It is also involved in sporulation []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.24 E-value=7 Score=46.90 Aligned_cols=245 Identities=12% Similarity=0.106 Sum_probs=144.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHS----YGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~----~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
....-|+++.+...++-|..+-+. .+ .|..+...+... +.+.|++++|...|-+-... +.|. .+|
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 456788899999999999887543 22 355555444444 45679999999888765532 2332 356
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003028 438 DIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQ 517 (856)
Q Consensus 438 ~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~ 517 (856)
.-|.......+-..+++.+.+.|+. +...-+.||.+|.+.++.+.-.++.+.-. .|.. ..-....+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 6667777778888888999988875 66677889999999999988877776654 2211 112344566677777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 518 SALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 518 ~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
+|..+-..... +... +.-.+-..+++++|.+.++.+.-...-+....|...+- ....++-..++-+..
T Consensus 481 ~a~~LA~k~~~-----he~v---l~ille~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll----~h~P~~t~~ili~~~ 548 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWV---LDILLEDLHNYEEALRYISSLPISELLRTLNKYGKILL----EHDPEETMKILIELI 548 (933)
T ss_pred HHHHHHHHhcc-----CHHH---HHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hhChHHHHHHHHHHH
Confidence 77665544332 2222 22334466889999998876532222222222322221 234445444444444
Q ss_pred HcCCCCCHHHHHHHH-----HHHHHcCCHHHHHHHHHHHHH
Q 003028 598 QAGLRPNVPTCNSLL-----SAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 598 ~~g~~pd~~t~n~Li-----~ay~~~g~~e~A~~l~~~M~~ 633 (856)
....++........+ ..+.-.++++....++..|.+
T Consensus 549 t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E 589 (933)
T KOG2114|consen 549 TELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSE 589 (933)
T ss_pred hhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHh
Confidence 322222222222222 222345567777777776775
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.82 E-value=29 Score=36.00 Aligned_cols=44 Identities=11% Similarity=0.127 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 376 FGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQM 421 (856)
Q Consensus 376 ~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m 421 (856)
++.|.-+..+|.+. .--+..|+.-...|..+|..+-|-..+++.
T Consensus 74 yEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 74 YEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 44555555555442 112334555566666677666666655554
|
|
| >KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.21 E-value=40 Score=36.08 Aligned_cols=71 Identities=27% Similarity=0.264 Sum_probs=35.6
Q ss_pred CChHHHHHHHH-HHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 549 GYLDEAEAVFA-EMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWY-EAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAY 625 (856)
Q Consensus 549 g~~~~A~~l~~-~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~-~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~ 625 (856)
..+++.....+ +|++.+ -|+..+...+-++......+.+-.++. +... ....+|..|+.+|+..|+.+-.+
T Consensus 269 ~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qal-----rhlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 269 DPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQAL-----RHLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred CCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHH-----HHHHhhhHHHHHHhcCChHHHHH
Confidence 34444444444 344433 456554433333333344443322222 1111 13456888899999988877554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.06 E-value=65 Score=38.34 Aligned_cols=185 Identities=14% Similarity=0.121 Sum_probs=105.1
Q ss_pred hhHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC--
Q 003028 340 HTVALGFFNWLRRQAGFKHDEHTYTTMVGI-LGRARQFGAINKLLDQMVR-------DGCQPNVVTYNRLIHSYGRAN-- 409 (856)
Q Consensus 340 ~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~-~~k~g~~~~A~~lf~~m~~-------~g~~pd~~ty~~Li~~~~~~g-- 409 (856)
...|+++++.........+-...-.....+ ++...+++.|...|....+ .| +.....-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 345666666665432221111111122223 4566789999999988876 44 2334556666676643
Q ss_pred ---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--ccCCHHH
Q 003028 410 ---YLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK-AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG--KAGHLQA 483 (856)
Q Consensus 410 ---~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k-~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~--k~g~~~~ 483 (856)
+.+.|+.+|.+.-+.| .|+...+-..+..... ..+...|.++|...-..|.. +...+.+++.... -..+...
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 6677999998888777 4555444333332222 24678899999988888753 2222222222222 3346888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003028 484 AHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGF 531 (856)
Q Consensus 484 A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi 531 (856)
|..++++..+.|.. ...--...+..+.. +.++.+.-.+..+...|.
T Consensus 383 A~~~~k~aA~~g~~-~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 383 AFAYYKKAAEKGNP-SAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHccCh-hhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 88888888887622 21111222333333 777777777776666554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.06 E-value=37 Score=35.56 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHhh--hChhHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 325 MDAYQANQVLKQL--QDHTVALGFFNWLRRQAGFKH-DEHTYTTMVGILGRARQFGAINKLLDQMVRD 389 (856)
Q Consensus 325 ~~~~~~~~vL~~l--~~~~~Al~~f~~m~~~~g~~p-d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~ 389 (856)
|-...++.-+..+ ++++.|...|+.+..++.+.| ...+--.++.++-+.++++.|...+++..+.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3344555556555 466777777777766555443 2334445556666677777777777766654
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.88 E-value=29 Score=41.81 Aligned_cols=43 Identities=7% Similarity=0.134 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003028 365 TMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRA 408 (856)
Q Consensus 365 ~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~ 408 (856)
.+|-.|.++|++++|.++..+... .+......+-..+..|+..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 567778889999999888854443 2344555667777777665
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.37 E-value=52 Score=36.49 Aligned_cols=310 Identities=15% Similarity=0.124 Sum_probs=191.6
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILG--RARQFGAINKLLDQMVRDGCQPNVVTYNRLIHS--YGRANYLNE 413 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~--k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~--~~~~g~~~~ 413 (856)
.....+...|..-++..| |..|-.++. -.|+-..|.++-.+-.+. +.-|....-.|+.+ -.-.|+++.
T Consensus 67 ~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~ 138 (531)
T COG3898 67 ESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYED 138 (531)
T ss_pred hCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHH
Confidence 455566667766665444 445544443 457777787776554422 23355555555543 345799999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003028 414 ALDVFKQMQVVGCEPDRVTYCT----LIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFC 489 (856)
Q Consensus 414 A~~lf~~m~~~g~~pd~~ty~~----Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~ 489 (856)
|.+-|+.|.. |+.|-.. |.-.--+.|+.+.|.++-+..-+.- +--...+.+++...|..|+++.|+++++
T Consensus 139 Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 139 ARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred HHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 9999999974 3333332 2233346788899988888776542 2235678889999999999999999999
Q ss_pred HHHHcC-CCCCHH--HHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHH
Q 003028 490 EMVNQG-CIPNLV--TYNIMIALQAK---ARNYQSALKLYRDMQNAGFEPDKV-TYSIVMEVLGHCGYLDEAEAVFAEMR 562 (856)
Q Consensus 490 ~m~~~g-~~pd~~--ty~~Li~~~~~---~g~~~~A~~ll~~M~~~gi~pd~~-ty~~ll~a~~~~g~~~~A~~l~~~m~ 562 (856)
.-.... +.+++. .-..|+.+-.. .-+...|.+.-.+.. .+.||.. .-.....++.+.|++.++-.+++.+-
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 766543 334433 22233333221 223444444433333 3566633 33345567899999999999999988
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003028 563 RKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQ-AGLRP-NVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL 640 (856)
Q Consensus 563 ~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~-~g~~p-d~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~ 640 (856)
+....| .+... ..+.+.|+.. ..-+++... ..++| |..+--.+..+-...|++..|..--+.... ..|..
T Consensus 291 K~ePHP--~ia~l--Y~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pre 362 (531)
T COG3898 291 KAEPHP--DIALL--YVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRE 362 (531)
T ss_pred hcCCCh--HHHHH--HHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchh
Confidence 765444 43333 3345666543 222222221 01233 566777788888889999888877666654 67888
Q ss_pred HHHHHHHHH-HHhcCCcchHHHHHHHHHHcCC
Q 003028 641 QTYTLLLSC-CTEARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 641 ~ty~~Ll~a-~~~~g~~~~a~~l~~~m~~~g~ 671 (856)
..|..|.+. -++.|+-.++.+.+..-.+.-.
T Consensus 363 s~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 363 SAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred hHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 888877775 4556877777776666555433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=87.37 E-value=22 Score=33.31 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003028 466 FTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGF 531 (856)
Q Consensus 466 ~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi 531 (856)
......++.+.+.|+-|.-.+++.++.+. -.++....-.+..+|.+.|+..++-+++.+.-+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444455555555555555555555431 224445555555566666666666666665555554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.27 E-value=8.7 Score=42.57 Aligned_cols=90 Identities=14% Similarity=0.115 Sum_probs=42.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc-----CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003028 368 GILGRARQFGAINKLLDQMVRD-----GC---------QPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTY 433 (856)
Q Consensus 368 ~~~~k~g~~~~A~~lf~~m~~~-----g~---------~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty 433 (856)
+.|.+.|++..|..-|+..... +. ..-..+++.|..+|.+.+++.+|+..-.+.+..+ +.|.-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3455666666666665554321 00 0112234444455555555555555555554443 3344444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 434 CTLIDIHAKAGFLDVAMDMYKKMQA 458 (856)
Q Consensus 434 ~~Ll~~~~k~g~~~~A~~l~~~m~~ 458 (856)
----.+|...|+++.|+..|+++++
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4444444555555555555555544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.04 E-value=5.5 Score=42.49 Aligned_cols=78 Identities=13% Similarity=0.216 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 003028 466 FTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQN-----AGFEPDKVTYSI 540 (856)
Q Consensus 466 ~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~-----~gi~pd~~ty~~ 540 (856)
.++..++..+..+|+++.+...++++...... +...|..||.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45667778888888888888888888876433 777888888888888888888888887754 577777666555
Q ss_pred HHHH
Q 003028 541 VMEV 544 (856)
Q Consensus 541 ll~a 544 (856)
..+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.95 E-value=24 Score=37.71 Aligned_cols=142 Identities=15% Similarity=0.139 Sum_probs=70.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 369 ILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDV 448 (856)
Q Consensus 369 ~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~ 448 (856)
.....|++.+|..+|+...... +-+...--.|..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3456677777777777666542 123444555667777777777777777766543211111222223344444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcC
Q 003028 449 AMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ--GCIPNLVTYNIMIALQAKAR 514 (856)
Q Consensus 449 A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~--g~~pd~~ty~~Li~~~~~~g 514 (856)
...+-.++-.. +-|...-..+...|...|+.++|.+.+-.+... |.. |...-..|+..+.-.|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 44444433332 224455555556666666666666555544432 222 3333444444444444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.81 E-value=48 Score=35.49 Aligned_cols=143 Identities=15% Similarity=0.147 Sum_probs=82.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003028 404 SYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQA 483 (856)
Q Consensus 404 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~ 483 (856)
.....+++.+|..+|....... .-+...--.|..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4466788888888888876653 334455667778888888888888888876543211112222223344444444444
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCh
Q 003028 484 AHQLFCEMVNQGCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNA--GFEPDKVTYSIVMEVLGHCGYL 551 (856)
Q Consensus 484 A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~--gi~pd~~ty~~ll~a~~~~g~~ 551 (856)
...+-.+.-.. | |...-..+...|...|+.++|++.+-.+... |.. |...-..|++.+.-.|..
T Consensus 222 ~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 222 IQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPA 288 (304)
T ss_pred HHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCC
Confidence 44444444332 3 5555566777777788888877766655443 322 233444555555544433
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.68 E-value=11 Score=41.89 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=72.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----CCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003028 402 IHSYGRANYLNEALDVFKQMQVV-----GCE---------PDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFT 467 (856)
Q Consensus 402 i~~~~~~g~~~~A~~lf~~m~~~-----g~~---------pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t 467 (856)
-+.|.+.|++..|...|++.... +.. .-..+++.|.-+|.+.+++..|++.-...+..+ +.|+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 35678889999999888875432 111 113345666666777777777777777666653 345555
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHH-HHHHHHHHH
Q 003028 468 YSVIINCLGKAGHLQAAHQLFCEMVNQGCIP-NLVTYNIMIALQAKARNYQS-ALKLYRDMQ 527 (856)
Q Consensus 468 y~~Li~~y~k~g~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~-A~~ll~~M~ 527 (856)
.----.+|...|+++.|+..|..+.+. .| |-..-+.|+...-+.....+ ..++|..|.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555566667777777777777777664 23 33333344444444333333 355666554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=86.27 E-value=73 Score=37.04 Aligned_cols=162 Identities=13% Similarity=0.103 Sum_probs=94.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC-----HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQVVG-CEPD-----RVTYCTLIDIHAK----AGFLDVAMDMYKKMQAAGLSPDTFT 467 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~~g-~~pd-----~~ty~~Ll~~~~k----~g~~~~A~~l~~~m~~~g~~pd~~t 467 (856)
+..++....-.|+-+.+++++.+-.+.+ +.-. ...|+.++..++. ....+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3455666666788888888887765432 1111 1234444444443 34677788888888765 456655
Q ss_pred HHHH-HHHHHccCCHHHHHHHHHHHHHcC-CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 468 YSVI-INCLGKAGHLQAAHQLFCEMVNQG-CI--PNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVME 543 (856)
Q Consensus 468 y~~L-i~~y~k~g~~~~A~~lf~~m~~~g-~~--pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~ 543 (856)
|... -..+...|++++|.+.|+...... -- .....+--+.-.+.-..+|++|.+.|..+.+..- -+..+|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence 5443 355667788888888888654310 00 1222333345556777888888888888876532 23444444444
Q ss_pred HH-HhcCCh-------HHHHHHHHHHH
Q 003028 544 VL-GHCGYL-------DEAEAVFAEMR 562 (856)
Q Consensus 544 a~-~~~g~~-------~~A~~l~~~m~ 562 (856)
+| ...|+. ++|.++|.++.
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 33 344666 67777777654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.27 E-value=45 Score=34.68 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGK 477 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k 477 (856)
|..-..+|...+++++|...+.+..+ +.+-+...|. ....++.|.-+.++|.+. +--+..|+-...+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 44444566666777777776655542 1122222221 123345555555555442 2223455666667777
Q ss_pred cCCHHHHHHHHHHH
Q 003028 478 AGHLQAAHQLFCEM 491 (856)
Q Consensus 478 ~g~~~~A~~lf~~m 491 (856)
+|..+.|-..+++.
T Consensus 104 ~GspdtAAmaleKA 117 (308)
T KOG1585|consen 104 CGSPDTAAMALEKA 117 (308)
T ss_pred hCCcchHHHHHHHH
Confidence 77777666665544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.14 E-value=12 Score=40.40 Aligned_cols=116 Identities=13% Similarity=0.051 Sum_probs=55.8
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHHcCCHH
Q 003028 442 KAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTY----NIMIALQAKARNYQ 517 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty----~~Li~~~~~~g~~~ 517 (856)
..|.+.+|-..++++.+. .+.|...++-.=.+|.-.|+.+.-...++++... ..+|...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345566666666666554 4445555555555566666655555555555432 11222211 12223334455556
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003028 518 SALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAE 560 (856)
Q Consensus 518 ~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~ 560 (856)
+|.+.-++..+.+ +.|.-.-.++...+--.|+..++.++..+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 6655555544332 22333333444444445555555555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.63 E-value=13 Score=39.17 Aligned_cols=96 Identities=20% Similarity=0.218 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-CHhhHHHHH
Q 003028 502 TYNIMIALQAKARNYQSALKLYRDMQNAGFEP--DKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWV-P-DEPVYGLLV 577 (856)
Q Consensus 502 ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~p--d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~-p-d~~~y~~Li 577 (856)
.|+.-+.. .+.|++.+|...|....+....- ....+-.|.+++...|+++.|..+|..+.+.-.. | -+..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 34443333 23444555555555555432110 0112334555555555555555555555542110 1 112333334
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 003028 578 DLWGKAGNVRKAWEWYEAMLQ 598 (856)
Q Consensus 578 ~~~~k~g~~~~A~~l~~~m~~ 598 (856)
....+.|+.++|..+|+++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 444455555555555555544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=84.74 E-value=77 Score=35.96 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----
Q 003028 531 FEPDKVTYSIVMEVLGHC--GYLDEAEAVFAEMRRKNWVPDE-PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRP---- 603 (856)
Q Consensus 531 i~pd~~ty~~ll~a~~~~--g~~~~A~~l~~~m~~~g~~pd~-~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~p---- 603 (856)
+-|....+..++....-. .++.--.++++.....-+.|+- -+...|+..+.+ +.+++..+.+.+....+.+
T Consensus 219 ~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~ 296 (549)
T PF07079_consen 219 FIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEE 296 (549)
T ss_pred hCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHH
Confidence 445555556666555433 2334444555555444444442 222333333333 5566666666555432111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 604 NVPTCNSLLSAFLRVGQLSDAYHLLQGML 632 (856)
Q Consensus 604 d~~t~n~Li~ay~~~g~~e~A~~l~~~M~ 632 (856)
=+.++..++....+.++..+|-..+.-+.
T Consensus 297 li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~ 325 (549)
T PF07079_consen 297 LIDRFGNLLSFKVKQVQTEEAKQYLALLK 325 (549)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 12345555666666666666666655444
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.64 E-value=8.5 Score=41.06 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 003028 571 PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN-----LGLKPSLQTYTL 645 (856)
Q Consensus 571 ~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~-----~g~~Pd~~ty~~ 645 (856)
.++..++..+...|+++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 356777888888888888888888888753 55778888888888888888888888887764 678888877766
Q ss_pred HHHH
Q 003028 646 LLSC 649 (856)
Q Consensus 646 Ll~a 649 (856)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6665
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.70 E-value=62 Score=34.05 Aligned_cols=170 Identities=11% Similarity=0.094 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCC--CCHHHHHHHHHHHHhcCCh
Q 003028 480 HLQAAHQLFCEMVNQGCIPNLV---TYNIMIALQAKARNYQSALKLYRDMQN---AGFE--PDKVTYSIVMEVLGHCGYL 551 (856)
Q Consensus 480 ~~~~A~~lf~~m~~~g~~pd~~---ty~~Li~~~~~~g~~~~A~~ll~~M~~---~gi~--pd~~ty~~ll~a~~~~g~~ 551 (856)
++++|..-|.+..+........ ..-.+|..+.+.+++++.++.|.+|.. ..+. -+....++++.......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 5666666666655432111222 223456677777777777777776642 1111 2344566777766666666
Q ss_pred HHHHHHHHHHHH----c-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHH
Q 003028 552 DEAEAVFAEMRR----K-NWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLR-----------PNVPTCNSLLSAF 615 (856)
Q Consensus 552 ~~A~~l~~~m~~----~-g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~-----------pd~~t~n~Li~ay 615 (856)
+....+++.-.. . +-..-..|-+-|-..|...+++.+..+++.++...-.. .=...|..=|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 555555443321 1 11222234455666677777788888888777642111 1134677778888
Q ss_pred HHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 003028 616 LRVGQLSDAYHLLQGMLNL-GLKPSLQTYTLLLSCC 650 (856)
Q Consensus 616 ~~~g~~e~A~~l~~~M~~~-g~~Pd~~ty~~Ll~a~ 650 (856)
....+-.+-..++++.+.- .--|.... ..+|+-|
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIREC 236 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIREC 236 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHc
Confidence 8888777777778777652 23344333 3344444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.47 E-value=63 Score=33.94 Aligned_cols=172 Identities=12% Similarity=0.043 Sum_probs=85.7
Q ss_pred HccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----
Q 003028 476 GKAGHLQAAHQLFCEMVNQGCI--PNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHC----- 548 (856)
Q Consensus 476 ~k~g~~~~A~~lf~~m~~~g~~--pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~----- 548 (856)
.+.|++++|.+.|+.+..+..- -...+--.++.++.+.+++++|+..+++....-..-....|..-|.+++..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 4557777777777777654211 123344455666777777777777777766543222223444445544422
Q ss_pred --CChH---HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 549 --GYLD---EAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSD 623 (856)
Q Consensus 549 --g~~~---~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~ 623 (856)
.+.. .|..-|+++... |=...-...|......+.+. =...=..+..-|.+.|.+..
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~r---------------yPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQR---------------YPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHH---------------CCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChHH
Confidence 1222 222223333321 11111112222222111110 00001245567788888888
Q ss_pred HHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCcchHHHHHHHHH
Q 003028 624 AYHLLQGMLNLGLKPSL---QTYTLLLSCCTEARSPYDMGFCHELMA 667 (856)
Q Consensus 624 A~~l~~~M~~~g~~Pd~---~ty~~Ll~a~~~~g~~~~a~~l~~~m~ 667 (856)
|..-+++|++. ..-+. ..+..+..+|...|-.++|...-+.+.
T Consensus 186 A~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 186 AINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 88888888874 22222 345555666777777666665544443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.06 E-value=1.1e+02 Score=36.46 Aligned_cols=110 Identities=8% Similarity=0.072 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 365 TMVGILGRARQFGAINKLLDQMVRDGC--QPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK 442 (856)
Q Consensus 365 ~Li~~~~k~g~~~~A~~lf~~m~~~g~--~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k 442 (856)
..|..+.+.|++-...+++..--. +. ..-...|+.+-..++....|++|.+.|..-.. -...+.++.+
T Consensus 765 LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~ 834 (1189)
T KOG2041|consen 765 LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYR 834 (1189)
T ss_pred hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHH
Confidence 445666666666665555432100 00 00133566666666666666666666654321 1123444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003028 443 AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFC 489 (856)
Q Consensus 443 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~ 489 (856)
..++++-+.+... ++.|....-.+..++.+.|.-++|.+.|-
T Consensus 835 le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 835 LELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 4444444333332 23344445555566666666665555543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.05 E-value=46 Score=32.81 Aligned_cols=132 Identities=12% Similarity=0.124 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH--H
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVT-YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRV-TYCTL--I 437 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~t-y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~-ty~~L--l 437 (856)
.|..-++. ...+..++|..-|.++.+.|..--++. .-.......+.|+...|...|+++-...-.|-.. -..-| .
T Consensus 61 ~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 44444443 455666777777777776654322211 1112233456677777777777765432222221 01111 1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 003028 438 DIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 438 ~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
-.+...|.++.+....+-+-..+-+.-...-.+|--+-.+.|++.+|.+.|..+.+.
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 123455666666666665554444444444455666666777777777777776653
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=82.83 E-value=92 Score=35.38 Aligned_cols=141 Identities=11% Similarity=0.054 Sum_probs=75.8
Q ss_pred HHHhhhChhHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HH
Q 003028 333 VLKQLQDHTVALGFFNWLRRQAGFKHD----EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHS--YG 406 (856)
Q Consensus 333 vL~~l~~~~~Al~~f~~m~~~~g~~pd----~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~--~~ 406 (856)
+|+.-++..+|-++|..+-+...-.|. ...-+-+|++|.. .+++.....+.++.+. .| ...|-.|..+ +-
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 345556777788887777543221111 2234456666653 3566666666666543 12 2223333322 24
Q ss_pred hcCCHHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHH
Q 003028 407 RANYLNEALDVFKQMQVV--GCEP------------DRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAG----LSPDTFTY 468 (856)
Q Consensus 407 ~~g~~~~A~~lf~~m~~~--g~~p------------d~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g----~~pd~~ty 468 (856)
+.+.+.+|++.+..-... +-.+ |-..=+..+..+...|.+.++..++++++..= ..-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 667788888877666543 2222 12222445566667777777777766665442 23566666
Q ss_pred HHHHHHHHc
Q 003028 469 SVIINCLGK 477 (856)
Q Consensus 469 ~~Li~~y~k 477 (856)
+.++-++++
T Consensus 171 d~~vlmlsr 179 (549)
T PF07079_consen 171 DRAVLMLSR 179 (549)
T ss_pred HHHHHHHhH
Confidence 665555544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.64 E-value=67 Score=34.35 Aligned_cols=70 Identities=19% Similarity=0.123 Sum_probs=43.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCCCHHHH
Q 003028 468 YSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQ-----NAGFEPDKVTY 538 (856)
Q Consensus 468 y~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~-----~~gi~pd~~ty 538 (856)
++.....|.++|.+.+|.++.+...... +.+...|-.|+..++..|+--.|.+-|+.|. +.|+..|...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3444566777777777777777666542 2356666777777777777666666666553 23665554433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=81.94 E-value=1e+02 Score=35.42 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=34.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 469 SVIINCLGKAGHLQAAHQLFCEMVNQGCI-PNLVTYNIMIALQAKARNYQSALKLYRDMQN 528 (856)
Q Consensus 469 ~~Li~~y~k~g~~~~A~~lf~~m~~~g~~-pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 528 (856)
..|..++-+.|+.++|.+.|.+|.+.... -.......|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34555555667777777777666543211 1223445566677777777777666666543
|
The molecular function of this protein is uncertain. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=81.50 E-value=36 Score=32.48 Aligned_cols=73 Identities=11% Similarity=0.044 Sum_probs=45.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003028 370 LGRARQFGAINKLLDQMVRDGCQP---NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKA 443 (856)
Q Consensus 370 ~~k~g~~~~A~~lf~~m~~~g~~p---d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~ 443 (856)
..+.|++++|.+.|+.+..+ .+- ....--.|+.+|.+.+++++|...+++..+.....-.+-|...+.+++..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 34677777777777777665 211 23344556777777777777777777777654333334555555555543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=81.47 E-value=57 Score=32.08 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=11.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH
Q 003028 468 YSVIINCLGKAGHLQAAHQLFCE 490 (856)
Q Consensus 468 y~~Li~~y~k~g~~~~A~~lf~~ 490 (856)
+..++..+...|++-+|.++...
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 33444455555555555555544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.01 E-value=38 Score=31.75 Aligned_cols=91 Identities=16% Similarity=0.131 Sum_probs=47.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCC
Q 003028 369 ILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVT---YCTLIDIHAKAGF 445 (856)
Q Consensus 369 ~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t---y~~Ll~~~~k~g~ 445 (856)
++...|+++.|++.|.+.... ++-....||.-..++.-.|+.++|++=+++..+..-...... |.---..|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 455666677777666666543 233556666666666666666666666666654321222211 2222233444455
Q ss_pred HHHHHHHHHHHHHCC
Q 003028 446 LDVAMDMYKKMQAAG 460 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g 460 (856)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555544443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.93 E-value=89 Score=34.05 Aligned_cols=114 Identities=9% Similarity=0.035 Sum_probs=49.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHHcCCHHH
Q 003028 373 ARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYC----TLIDIHAKAGFLDV 448 (856)
Q Consensus 373 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~----~Ll~~~~k~g~~~~ 448 (856)
.|.+.+|-..++++.+. .+.|...++..=.+|.-+|+.+.-...++++... ..+|...|. .+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34444555555555443 2334444444445555555555555555544321 012221111 11222234455555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003028 449 AMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFC 489 (856)
Q Consensus 449 A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~ 489 (856)
|++.-++..+.+ +-|.-.-.++.+.+-..|++.++.++..
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 555554444432 2234444444444444555555544443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.79 E-value=40 Score=31.63 Aligned_cols=90 Identities=14% Similarity=0.037 Sum_probs=53.6
Q ss_pred HHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCC
Q 003028 334 LKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYN---RLIHSYGRANY 410 (856)
Q Consensus 334 L~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~---~Li~~~~~~g~ 410 (856)
+..-++.+.|++.|.....-. +-....||.-..++.-.|+.++|+.=+++..+..-..+..... .--..|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 334467777777777665422 2344577777777777777777777777666532122222222 22234556677
Q ss_pred HHHHHHHHHHHHHcC
Q 003028 411 LNEALDVFKQMQVVG 425 (856)
Q Consensus 411 ~~~A~~lf~~m~~~g 425 (856)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766655
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=80.66 E-value=3.2 Score=29.19 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHh
Q 003028 713 VDAVVDFLHKSGLKEEAGSVWEVAAQ 738 (856)
Q Consensus 713 ~~aLi~~y~k~G~~eeA~~lf~~m~~ 738 (856)
|..|.+.|.+.|++++|+++|++...
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67899999999999999999999653
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=80.20 E-value=1e+02 Score=35.52 Aligned_cols=58 Identities=10% Similarity=0.012 Sum_probs=32.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003028 541 VMEVLGHCGYLDEAEAVFAEMRRKNWV-PDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQ 598 (856)
Q Consensus 541 ll~a~~~~g~~~~A~~l~~~m~~~g~~-pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~ 598 (856)
+..++-+.|+.++|.+.+.+|.+.... -...+...|+.++...+.+.++..++.+-.+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 334444556666666666666543211 1233455666666666666666666666543
|
The molecular function of this protein is uncertain. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 856 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 1e-04 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 91.4 bits (225), Expect = 6e-19
Identities = 35/234 (14%), Positives = 67/234 (28%), Gaps = 4/234 (1%)
Query: 412 NEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVI 471
A + + P L+ LDV + A LS
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 472 INCLGKAGHLQAAHQLFCEMVNQ---GCIPNLVTYNIMIALQAKARNYQSALKLYRDMQN 528
C L AH L Q + L YN ++ A+ ++ + + +++
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 529 AGFEPDKVTYSIVMEVLGHCG-YLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVR 587
AG PD ++Y+ ++ +G E +M ++ +L+ +A ++
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 588 KAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQ 641
+ P + LL L + L Q
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ 307
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 87.6 bits (215), Expect = 1e-17
Identities = 45/346 (13%), Positives = 99/346 (28%), Gaps = 26/346 (7%)
Query: 381 KLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEA---LDVFKQMQVVGCEPDRVTYCTLI 437
Q + + L A L V + Y ++
Sbjct: 113 APSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVM 172
Query: 438 DIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGH-LQAAHQLFCEMVNQGC 496
A+ G + + ++ AGL+PD +Y+ + C+G+ + +M +G
Sbjct: 173 LGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGL 232
Query: 497 IPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEA 556
+ ++++ + +A ++ K+ P V S ++L D +
Sbjct: 233 KLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTS---KLLRDVYAKDGRVS 289
Query: 557 VFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFL 616
+ L ++L A V + ++ T +L +
Sbjct: 290 YPKLHLPLKTLQCLFEKQLHMEL---ASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWE 346
Query: 617 RVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMF 676
+ L A + L + + L E +
Sbjct: 347 K--ALCRALRETKNRLEREVYEGRFSLYPFLCLLDE-----------REVVRM---LLQV 390
Query: 677 LLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHK 722
L ++P+ G + + + H R+ G V A+ + K
Sbjct: 391 LQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQNHYRK 436
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 86.8 bits (213), Expect = 2e-17
Identities = 27/179 (15%), Positives = 56/179 (31%), Gaps = 4/179 (2%)
Query: 349 WLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLD---QMVRDGCQPNVVTYNRLIHSY 405
QA + Q + LL + + YN ++ +
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175
Query: 406 GRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAG-FLDVAMDMYKKMQAAGLSPD 464
R E + V ++ G PD ++Y + + ++M GL
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235
Query: 465 TFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLY 523
+V+++ +A L+A H++ +P V + ++ S KL+
Sbjct: 236 ALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLH 294
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.7 bits (185), Expect = 4e-14
Identities = 89/691 (12%), Positives = 187/691 (27%), Gaps = 237/691 (34%)
Query: 151 DPTRPLSNIKPANVKTIRRENVSKVYPNSSAES-----TVGSNPSTGYHNAKDKGDNSNI 205
D + + + + I ++ + + T+ S ++ N
Sbjct: 40 DMPKSI--LSKEEIDHIIMS------KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 206 ARRFKRVSNASNGTSLETHNVSSDNSDRRRIVQPRSKAHSNRLNSNFK-----SNLQPSD 260
+ S+ T Q +K + +RL K L+P+
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 261 AKVVE----C-----VSE--RFSKPSREMKIPAGLAPFSRHFASTGNVVESVSRILRQWK 309
+++ + K +M F + + N + + K
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKM-------DFKIFWLNLKNCNSPETVLEMLQK 204
Query: 310 WGPLAEEALGNTNYSMDAYQANQVLKQLQDHTVAL-----GFFNWLRRQAGFKHDEHTYT 364
L YQ + DH+ + LRR K +
Sbjct: 205 ---L-------------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--LKSKPYE-- 244
Query: 365 TMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVV 424
N LL + + A + +
Sbjct: 245 ---------------NCLLV--LLNVQNAKAW----------------NAFN-------L 264
Query: 425 GCEPDR--VT--YCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGH 480
C + +T + + D + A +++D + L+PD S+++ L
Sbjct: 265 SC---KILLTTRFKQVTDFLSAATTTHISLDHHSM----TLTPDE-VKSLLLKYLD---- 312
Query: 481 LQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSI 540
L E++ P ++ +IA R+ + ++ + DK+T I
Sbjct: 313 -CRPQDLPREVL--TTNPRRLS---IIA--ESIRDGLATWDNWKHVNC-----DKLTTII 359
Query: 541 VMEVLGHCGYLDEAE--------AVFAEMRRKN-WVPDEPVYGLLVDLWGKAGNVRKAWE 591
+ L+ AE +VF + +P LL +W
Sbjct: 360 ESSL----NVLEPAEYRKMFDRLSVF----PPSAHIP----TILLSLIWFDV-------I 400
Query: 592 WYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSD---AYHLLQGMLNLGLKPS--------- 639
+ M+ N L L Q + + + L L +K
Sbjct: 401 KSDVMVVV---------NKLHKYSLVEKQPKESTISIPSIY--LELKVKLENEYALHRSI 449
Query: 640 LQTYTLLLSCCTEARSP--YDMGFCHELMAVSGHPAHM--------------------FL 677
+ Y + + ++ P D F + GH H+ FL
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHI----GH--HLKNIEHPERMTLFRMVFLDFRFL 503
Query: 678 --------LSMPSPGP------DGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKS 723
+ + G + + ++ ++ LV+A++DFL K
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYI--------CDNDPKYERLVNAILDFLPKI 555
Query: 724 G---LKEEAGSVWEVAAQ---KNVYPDAVKE 748
+ + + +A + ++ +A K+
Sbjct: 556 EENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 51/413 (12%), Positives = 119/413 (28%), Gaps = 37/413 (8%)
Query: 226 VSSDNSDRRRIVQPRSKAHSNRLNSNFKSNLQPSDAKVVECVSERFSKPSREMKIPAGLA 285
V +D R P + H + + A + + S +
Sbjct: 3 VKRTQTDSRMQSTPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANN 62
Query: 286 PFSRHFASTGNVVESVSRILRQWKWGPLAEEALGNTNYSMDAYQANQVLKQLQDHTVALG 345
+ ++ + R+ +AL Y A+ +VL + A
Sbjct: 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDA-- 120
Query: 346 FFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQ-----MVRDGCQPNVVTYNR 400
+ Q ++ RA+ L ++ + C + +
Sbjct: 121 ---FWLAQVYCCTGDYA---------RAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQG 168
Query: 401 LIHSYGRANYLNEALDVFKQM--QVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQA 458
++ G N + ++ Q G + + ++ D A + YK+ A
Sbjct: 169 ALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE--A 226
Query: 459 AGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEM---VNQGCIPNLVTYNIMIALQAKARN 515
+ + L L A + + + + + L+ +
Sbjct: 227 LMVDAK---CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTS 283
Query: 516 YQSALKLYRDMQNA--GFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEP-V 572
++ L+ D ++ G E + L + A+ ++ + P V
Sbjct: 284 HEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDV 341
Query: 573 YGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVP-TCNSLLSAFLRVGQLSDA 624
Y L + ++G K + ++ P T ++ +L V ++S+A
Sbjct: 342 YPLHLASLHESGEKNKLYLISNDLVD--RHPEKAVTWLAVGIYYLCVNKISEA 392
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 26/228 (11%), Positives = 68/228 (29%), Gaps = 29/228 (12%)
Query: 397 TYNRL------IHSYGRA-NYLNEALDVFKQMQVVGCEPDRV-TYCTLIDIHAKAGFLDV 448
+ ++ + + +Y +A +++K+ + + + +
Sbjct: 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE--AYNIRLLQCHSLFATNFLDLKQYED 202
Query: 449 AMDMYKK-MQAAGLSPDTFTYSVIINCLG----------KA-GHLQAAHQLFCEMVNQGC 496
A+ ++K A + +G A + + A +F E
Sbjct: 203 AISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262
Query: 497 IPNLVTYNIMIALQAKARNYQSALKLYRD----MQNAGFEPDKVTYSIVMEVLGHCGYLD 552
+P Y ++ + K A + + Q AG + + + +
Sbjct: 263 LPQ--AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE 320
Query: 553 EAEAVFAEMRRKNWVPD-EPVYGLLVDLWGKAGNVRKAWEWYEAMLQA 599
+ F + K D E + + + N +KA ++ + Q
Sbjct: 321 AIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 856 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.91 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.84 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.82 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.82 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.78 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.76 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.74 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.73 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.71 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.67 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.66 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.66 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.63 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.63 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.62 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.61 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.59 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.57 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.56 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.55 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.55 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.55 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.55 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.54 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.5 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.48 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.44 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.43 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.39 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.38 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.38 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.37 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.36 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.36 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.36 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.35 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.35 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.34 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.33 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.32 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.31 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.31 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.31 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.3 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.28 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.27 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.26 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.26 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.23 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.23 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.2 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.2 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.18 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.18 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.14 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.14 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.11 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.1 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.09 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.07 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.07 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.06 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.06 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.04 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.04 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.99 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.96 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.94 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.92 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.9 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.9 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.9 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.89 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.79 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.78 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.77 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.75 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.71 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.71 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.7 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.68 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.62 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.54 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.53 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.52 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.49 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.37 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.36 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.36 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.36 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.35 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.33 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.32 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.31 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.31 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.29 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.28 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.28 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.27 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.27 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.27 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.26 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.25 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.25 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.23 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.21 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.19 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.16 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.14 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.13 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.12 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.11 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.09 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.08 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.08 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.08 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.08 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.03 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.02 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.01 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.0 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.98 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.94 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.93 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.9 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.88 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.88 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.86 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.85 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.83 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.82 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.81 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.81 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.81 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.78 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.73 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.71 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.7 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.68 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.68 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.65 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.64 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.63 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.61 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.61 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.61 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.6 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.59 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.59 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.58 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.57 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.55 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.55 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.53 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.52 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.51 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.51 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.5 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.5 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.49 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.46 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.46 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.46 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.44 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.42 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.36 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.22 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.21 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.2 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.18 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.16 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.12 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.11 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.06 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.02 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.01 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 96.98 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 96.97 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 96.96 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 96.86 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.7 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.69 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.68 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.68 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.58 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 96.53 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.53 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 96.39 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.37 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.35 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.31 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.28 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.13 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.12 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.08 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.05 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.67 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 95.5 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 95.48 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 95.38 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 95.0 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 94.82 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 94.58 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 94.44 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 94.25 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 94.24 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 94.22 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.15 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.27 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 93.24 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 92.76 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 91.91 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 91.33 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 90.62 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 90.29 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 90.22 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 88.2 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 87.75 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 87.53 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 86.17 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 83.59 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 81.71 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 81.44 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 80.67 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=297.70 Aligned_cols=440 Identities=8% Similarity=-0.037 Sum_probs=349.3
Q ss_pred CHHHHHHHHHh---hhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 326 DAYQANQVLKQ---LQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLI 402 (856)
Q Consensus 326 ~~~~~~~vL~~---l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li 402 (856)
+...++.+++. .++++.|+.+|+.+.. ..|+..++..++.+|.+.|++++|..+|+.+... +++..+|+.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 34455555554 4789999999999974 3478889999999999999999999999988653 67999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHH-Hc--------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003028 403 HSYGRANYLNEALDVFKQMQ-VV--------------GCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFT 467 (856)
Q Consensus 403 ~~~~~~g~~~~A~~lf~~m~-~~--------------g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t 467 (856)
.+|.+.|++++|+++|+++. .. +.+.+..+|+.++.+|.+.|++++|.++|++|.+.+. .+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHH
Confidence 99999999999999999532 21 2344689999999999999999999999999988642 23333
Q ss_pred HH--------------------------------------HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 468 YS--------------------------------------VIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIAL 509 (856)
Q Consensus 468 y~--------------------------------------~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~ 509 (856)
+. .++.+|.+.|++++|.++|+++.+. +++..+|+.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 33 3356677899999999999999875 4799999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 003028 510 QAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKA 589 (856)
Q Consensus 510 ~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A 589 (856)
|.+.|++++|+++|++|.+.+. .+..++..++.++...|++++|..+++++.+.. ..+..+++.++.+|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999987653 367789999999999999999999999998654 45788999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003028 590 WEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVS 669 (856)
Q Consensus 590 ~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~ 669 (856)
.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|++|.+.+ ..+..+|..+..+|.+.|++++|..+++.+.+.
T Consensus 393 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998753 4568899999999999999999999999999853 347789999999999999999999999999887
Q ss_pred CCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcC----CCCch--HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 003028 670 GHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSE----DRESK--RGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYP 743 (856)
Q Consensus 670 g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~----~~~~~--~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~~P 743 (856)
.+.....+..+...+...+ ..+.+..+++.+... +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ |
T Consensus 471 ~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p 547 (597)
T 2xpi_A 471 FQYDPLLLNELGVVAFNKS-DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--T 547 (597)
T ss_dssp CCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--S
T ss_pred CCCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--C
Confidence 7654443333322222223 345555555554433 44555 6789999999999999999999999998875 4
Q ss_pred CcccccCceeeeeccccccchhhHHHHHHHHHHHHHHHHHcCCCCCce
Q 003028 744 DAVKEKGMSYWLINLHVMSDGTAVIALSRTLAWFRKQMLISGVGPSRI 791 (856)
Q Consensus 744 d~~t~~~~~~w~~~~~~l~~g~a~~g~~~~l~~~~~~m~~~g~~Pd~i 791 (856)
+.. ..|. .+...+...|..+.+..+++++++. .|+..
T Consensus 548 ~~~-----~~~~----~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 584 (597)
T 2xpi_A 548 NDA-----NVHT----AIALVYLHKKIPGLAITHLHESLAI--SPNEI 584 (597)
T ss_dssp CCH-----HHHH----HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCh-----HHHH----HHHHHHHHhCCHHHHHHHHHHHHhc--CCCCh
Confidence 322 2232 2455556666555555555777665 36653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-29 Score=295.64 Aligned_cols=440 Identities=9% Similarity=-0.028 Sum_probs=346.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 358 HDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 358 pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
++...|+.++..|.+.|++++|..+|++|... .|+..+|..++.+|.+.|++++|..+|+++... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 57889999999999999999999999999864 588899999999999999999999999998643 78999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 003028 438 DIHAKAGFLDVAMDMYKKMQAA---------------GLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVT 502 (856)
Q Consensus 438 ~~~~k~g~~~~A~~l~~~m~~~---------------g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~t 502 (856)
.+|.+.|++++|.++|+++... +.+.+..+|+.++.+|.+.|++++|.++|++|.+.+.. +...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHH
Confidence 9999999999999999953221 22346899999999999999999999999999876432 3333
Q ss_pred HHH--------------------------------------HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 503 YNI--------------------------------------MIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEV 544 (856)
Q Consensus 503 y~~--------------------------------------Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a 544 (856)
+.. ++..|.+.|++++|.++|++|.+. .++..+++.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 333 355667889999999999998765 5789999999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003028 545 LGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDA 624 (856)
Q Consensus 545 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A 624 (856)
|.+.|++++|..+|+++.+.+. .+..+++.++.+|.+.|++++|..+|+++.+. .+.+..+|+.++..|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999998663 47889999999999999999999999999865 356799999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcC
Q 003028 625 YHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSE 704 (856)
Q Consensus 625 ~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~ 704 (856)
.++|+++.+.. ..+..+|..+..++.+.|++++|..+++.+.+.++.....+..+...+...+ ..+.+..+++.+...
T Consensus 393 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG-NILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 99999999732 3357899999999999999999999999999887754333333222222222 345566666655544
Q ss_pred CCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCCCcccccCceeeeeccccccchhhHHHHHHHHHHHHHH
Q 003028 705 DRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQK----NVYPDAVKEKGMSYWLINLHVMSDGTAVIALSRTLAWFRKQ 780 (856)
Q Consensus 705 ~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~----~~~Pd~~t~~~~~~w~~~~~~l~~g~a~~g~~~~l~~~~~~ 780 (856)
.+. +..+|+.++.+|.+.|++++|.++|++|.+. +..|+.. ...|. .+...+...|..+.+..++++
T Consensus 471 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~----~~~~~----~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 471 FQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW----AATWA----NLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG----HHHHH----HHHHHHHHTTCHHHHHHHHHH
T ss_pred CCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH----HHHHH----HHHHHHHHhcCHHHHHHHHHH
Confidence 333 5678999999999999999999999999876 5555421 11232 355556666665555555578
Q ss_pred HHHcCCCCCceeeeeeccccCCcccchHHHHHHHHHHhhcC
Q 003028 781 MLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLHMFS 821 (856)
Q Consensus 781 m~~~g~~Pd~it~i~~l~~~~~~~~~~~l~~a~~~ll~~~~ 821 (856)
+.+.+ |+.......++..- ...|..++|.+.+...+.
T Consensus 542 ~~~~~--p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 542 GLLLS--TNDANVHTAIALVY--LHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHS--SCCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHH
T ss_pred HHHhC--CCChHHHHHHHHHH--HHhCCHHHHHHHHHHHHh
Confidence 87765 76543322222221 123448888888777654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=282.79 Aligned_cols=203 Identities=19% Similarity=0.275 Sum_probs=175.2
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------HHHH
Q 003028 345 GFFNWLRRQAGFKHD-EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANY---------LNEA 414 (856)
Q Consensus 345 ~~f~~m~~~~g~~pd-~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~---------~~~A 414 (856)
.++..+.+ .+.... ...++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++|
T Consensus 11 ~L~~~~~~-k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 11 NLSRKAKK-KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHH-hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 34444443 344443 346888999999999999999999999999999999999999999987654 6889
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 003028 415 LDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 415 ~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003028 495 GCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHC 548 (856)
Q Consensus 495 g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~ 548 (856)
|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.++..|+..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999988764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-28 Score=281.32 Aligned_cols=207 Identities=13% Similarity=0.189 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------H
Q 003028 377 GAINKLLDQMVRDGCQPNV-VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF---------L 446 (856)
Q Consensus 377 ~~A~~lf~~m~~~g~~pd~-~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~---------~ 446 (856)
..++.+...+.+++....+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3456666777776665543 45788899999999999999999999999999999999999999887654 6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 447 DVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDM 526 (856)
Q Consensus 447 ~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 526 (856)
++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 003028 527 QNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKA 583 (856)
Q Consensus 527 ~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~ 583 (856)
.+.|+.||..||++||.+|++.|+.++|.++|++|++.+..|+..||+.++..|+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888888888888888888888888764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-20 Score=208.57 Aligned_cols=360 Identities=15% Similarity=0.077 Sum_probs=305.0
Q ss_pred HHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003028 334 LKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNE 413 (856)
Q Consensus 334 L~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~ 413 (856)
.-..++++.|+..+..+.+.. +.+...+..+...+...|++++|..+++...+.. +.+...|..+...|.+.|++++
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 345689999999998887643 2356677888889999999999999999988753 5688899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003028 414 ALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 414 A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~ 493 (856)
|++.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...|...|++++|.++|+++.+
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999998764 4456789999999999999999999999998864 33566777888999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH
Q 003028 494 QGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVY 573 (856)
Q Consensus 494 ~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y 573 (856)
... -+..+|..+...|...|++++|+..|+++.... +.+...|..+...+...|++++|...+.+..+.. +.+..++
T Consensus 164 ~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 164 TQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 632 267899999999999999999999999998864 2346788889999999999999999999998764 2367889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003028 574 GLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEA 653 (856)
Q Consensus 574 ~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~ 653 (856)
..+...|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|++.|+++++. ...+..++..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHc
Confidence 999999999999999999999999853 346789999999999999999999999999984 345678899999999999
Q ss_pred CCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHH
Q 003028 654 RSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVW 733 (856)
Q Consensus 654 g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf 733 (856)
|++++|..+++.+.+.. +.+..++..++..|.+.|++++|.+.|
T Consensus 319 g~~~~A~~~~~~al~~~------------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVF------------------------------------PEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp TCHHHHHHHHHHHTTSC------------------------------------TTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC------------------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99887777665554321 123556889999999999999999999
Q ss_pred HHHHhC
Q 003028 734 EVAAQK 739 (856)
Q Consensus 734 ~~m~~~ 739 (856)
+++.+.
T Consensus 363 ~~a~~~ 368 (388)
T 1w3b_A 363 KEAIRI 368 (388)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 999875
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-19 Score=200.31 Aligned_cols=330 Identities=14% Similarity=0.076 Sum_probs=283.5
Q ss_pred HHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003028 332 QVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYL 411 (856)
Q Consensus 332 ~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~ 411 (856)
.+....++++.|..+++...+. .+.+..+|..+..+|.+.|++++|...|+++.+.. +.+...|..+..+|.+.|++
T Consensus 41 ~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 117 (388)
T 1w3b_A 41 SIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDM 117 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCH
Confidence 3344568999999999988764 34578899999999999999999999999998753 33567899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003028 412 NEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEM 491 (856)
Q Consensus 412 ~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m 491 (856)
++|.+.|+++.+.. +.+...+..+...+...|++++|.++|+++.+.. +-+..+|..+...|.+.|++++|...|+++
T Consensus 118 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 195 (388)
T 1w3b_A 118 EGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195 (388)
T ss_dssp SHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998864 3345667788888999999999999999998863 346889999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 003028 492 VNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEP 571 (856)
Q Consensus 492 ~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~ 571 (856)
.+... .+...|..+...+...|++++|+..|++..... +-+..++..+...+...|++++|...|+.+.+.. +.+..
T Consensus 196 l~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 272 (388)
T 1w3b_A 196 VTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPD 272 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHH
T ss_pred HhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHH
Confidence 98643 267789999999999999999999999988753 2247788999999999999999999999999864 33677
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 572 VYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCT 651 (856)
Q Consensus 572 ~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~ 651 (856)
+|..+...|.+.|++++|...|+++.+. .+.+..+|+.+...|.+.|++++|+.+|+++++. ...+..++..+...+.
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~ 350 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQ 350 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHH
Confidence 8999999999999999999999999976 3668899999999999999999999999999873 2334678899999999
Q ss_pred hcCCcchHHHHHHHHHHcCC
Q 003028 652 EARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 652 ~~g~~~~a~~l~~~m~~~g~ 671 (856)
..|++++|...++.+.+..+
T Consensus 351 ~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 351 QQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp TTTCCHHHHHHHHHHHTTCT
T ss_pred HcCCHHHHHHHHHHHHhhCC
Confidence 99999999888877765433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-17 Score=189.64 Aligned_cols=293 Identities=15% Similarity=0.072 Sum_probs=226.1
Q ss_pred hhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003028 336 QLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEAL 415 (856)
Q Consensus 336 ~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 415 (856)
..++++.|+.+|+.+... .+.+..+|..+..++...|++++|...|+.+.+.+ +.+...|..+..+|.+.|++++|.
T Consensus 38 ~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 114 (450)
T 2y4t_A 38 AAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAE 114 (450)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 447888888888888754 23467788888888888889999998888888763 346778888888888888999999
Q ss_pred HHHHHHHHcCCCCCH---HHHHHHHHH------------HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 003028 416 DVFKQMQVVGCEPDR---VTYCTLIDI------------HAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGH 480 (856)
Q Consensus 416 ~lf~~m~~~g~~pd~---~ty~~Ll~~------------~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~ 480 (856)
+.|+++.+.. +.+. ..+..+... +.+.|++++|..+|+++.+.. +.+..++..+..+|.+.|+
T Consensus 115 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 192 (450)
T 2y4t_A 115 DDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGE 192 (450)
T ss_dssp HHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCC
Confidence 8888887653 2333 566666444 778888888888888888763 4477888888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH------------HHHHHh
Q 003028 481 LQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD-KVTYSIV------------MEVLGH 547 (856)
Q Consensus 481 ~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd-~~ty~~l------------l~a~~~ 547 (856)
+++|.++|+++.+.. +.+..+|..+...|...|++++|+..|+++.... |+ ...+..+ ...|..
T Consensus 193 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (450)
T 2y4t_A 193 PRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIR 269 (450)
T ss_dssp GGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887653 2367888888888888888888888888887653 33 3344433 677888
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003028 548 CGYLDEAEAVFAEMRRKNWVPD-----EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLS 622 (856)
Q Consensus 548 ~g~~~~A~~l~~~m~~~g~~pd-----~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e 622 (856)
.|++++|..+|+.+.+.. |+ ..+|..+..++.+.|++++|...++++.+.. +.+...|..+..+|...|+++
T Consensus 270 ~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~ 346 (450)
T 2y4t_A 270 DGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYD 346 (450)
T ss_dssp HTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHH
Confidence 888888888888888753 33 3467788888888888888888888887642 346788888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHH
Q 003028 623 DAYHLLQGMLNLGLKPSLQ 641 (856)
Q Consensus 623 ~A~~l~~~M~~~g~~Pd~~ 641 (856)
+|...|+++++ +.|+..
T Consensus 347 ~A~~~~~~al~--~~p~~~ 363 (450)
T 2y4t_A 347 EAIQDYETAQE--HNENDQ 363 (450)
T ss_dssp HHHHHHHHHHT--TSSSCH
T ss_pred HHHHHHHHHHH--hCcchH
Confidence 88888888886 456543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-17 Score=192.88 Aligned_cols=394 Identities=9% Similarity=-0.015 Sum_probs=254.7
Q ss_pred HhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003028 335 KQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEA 414 (856)
Q Consensus 335 ~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A 414 (856)
-..++++.|+..|+.+.... |+...|..+..++.+.|++++|...|+.+.+.. +.+...|..+..+|.+.|++++|
T Consensus 17 ~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 17 FRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHH
Confidence 34578999999999998643 788899999999999999999999999998764 34678899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---------------------------------
Q 003028 415 LDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGL--------------------------------- 461 (856)
Q Consensus 415 ~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~--------------------------------- 461 (856)
...|+++...+ +++......++..+........+.+.+..+...+.
T Consensus 93 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 93 MFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 99999998765 34444444444444433322222222211111000
Q ss_pred -----------CCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHH-----cCC--------CCCHHHHHHHHHHHHHcC
Q 003028 462 -----------SPDTFTYSVIINCLGK---AGHLQAAHQLFCEMVN-----QGC--------IPNLVTYNIMIALQAKAR 514 (856)
Q Consensus 462 -----------~pd~~ty~~Li~~y~k---~g~~~~A~~lf~~m~~-----~g~--------~pd~~ty~~Li~~~~~~g 514 (856)
+.+...+..+...+.. .|++++|..+|+++.+ ... +.+..+|..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 0113333333333333 6777777777777766 211 113456666777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 003028 515 NYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYE 594 (856)
Q Consensus 515 ~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~ 594 (856)
++++|+.+|+++.+.... ...+..+...+...|++++|...++.+.+.. ..+..++..+...|...|++++|...|+
T Consensus 252 ~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp CHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 777777777777665433 6666677777777777777777777776643 2355667777777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChH
Q 003028 595 AMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAH 674 (856)
Q Consensus 595 ~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~ 674 (856)
+..+.. +.+...|..+...|...|++++|+.+|+++.+.. ..+..++..+...+...|++++|...++.+....+...
T Consensus 329 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 329 KAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp HHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 777642 3356677777777777777777777777777632 22345666666677777777777777766655432211
Q ss_pred H------HHHhcCCCCCC---cccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003028 675 M------FLLSMPSPGPD---GQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKN 740 (856)
Q Consensus 675 ~------~~~~l~~~~~~---~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~ 740 (856)
. .+..+...+.. . +..+.+...++......+. +..++..+..+|.+.|++++|.+.|+++.+..
T Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 407 GIYVGIAPLVGKATLLTRNPTV-ENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SCSSCSHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhhhhhc-CCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 0 11111111111 1 2334444444443333222 45567899999999999999999999998864
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.1e-17 Score=185.03 Aligned_cols=313 Identities=13% Similarity=0.097 Sum_probs=202.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLID 438 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~ 438 (856)
+...|..+...+.+.|++++|..+|+.+.+.. +.+...|..+..+|...|++++|+..|+++.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 45667777777778888888888887777642 3467777777777777788888888887777654 445667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGLSPD-T---FTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKAR 514 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~~pd-~---~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g 514 (856)
+|.+.|++++|.+.|+++.+.. |+ . ..+..++..+.. ..+..+...+...|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcC
Confidence 7777777777777777776642 33 3 445544433111 11222334455666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 003028 515 NYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYE 594 (856)
Q Consensus 515 ~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~ 594 (856)
++++|+.+|+++.+.. +.+...+..+..+|...|++++|..+|+.+.+.. +.+..++..+..+|...|++++|...|+
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666766666666542 2345566666666667777777777776666543 2355666677777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCcc
Q 003028 595 AMLQAGLRPNVPTCNSL------------LSAFLRVGQLSDAYHLLQGMLNLGLKPS-----LQTYTLLLSCCTEARSPY 657 (856)
Q Consensus 595 ~m~~~g~~pd~~t~n~L------------i~ay~~~g~~e~A~~l~~~M~~~g~~Pd-----~~ty~~Ll~a~~~~g~~~ 657 (856)
++.... +.+...+..+ ...|.+.|++++|+.+|+++++ +.|+ ...|..+...+.+.|+++
T Consensus 236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 766532 2233444443 6777778888888888888776 3444 345666666777777776
Q ss_pred hHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 003028 658 DMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAA 737 (856)
Q Consensus 658 ~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~ 737 (856)
+|...++.+.+.. +.+..+|..++.+|.+.|++++|.+.|+++.
T Consensus 313 ~A~~~~~~a~~~~------------------------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 356 (450)
T 2y4t_A 313 EAIRVCSEVLQME------------------------------------PDNVNALKDRAEAYLIEEMYDEAIQDYETAQ 356 (450)
T ss_dssp HHHHHHHHHHHHC------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC------------------------------------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6666555443321 1134556778888888888888888888887
Q ss_pred hC
Q 003028 738 QK 739 (856)
Q Consensus 738 ~~ 739 (856)
+.
T Consensus 357 ~~ 358 (450)
T 2y4t_A 357 EH 358 (450)
T ss_dssp TT
T ss_pred Hh
Confidence 64
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-16 Score=183.87 Aligned_cols=342 Identities=13% Similarity=0.006 Sum_probs=254.3
Q ss_pred CCHHHHHHHH---HhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------
Q 003028 325 MDAYQANQVL---KQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPN------- 394 (856)
Q Consensus 325 ~~~~~~~~vL---~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd------- 394 (856)
|+...+..+- ...++++.|+..|+.+.+.. +.+..+|..+..+|.+.|++++|...|+.+.+.+. ++
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ 113 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPM 113 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHH
Confidence 5655554433 34589999999999998643 34577899999999999999999999999987541 11
Q ss_pred ------------------------------------------------------------------------HHHHHHHH
Q 003028 395 ------------------------------------------------------------------------VVTYNRLI 402 (856)
Q Consensus 395 ------------------------------------------------------------------------~~ty~~Li 402 (856)
...+..+.
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (514)
T 2gw1_A 114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG 193 (514)
T ss_dssp HHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHH
Confidence 22233333
Q ss_pred HHHHh---cCCHHHHHHHHHHHHH-----cCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003028 403 HSYGR---ANYLNEALDVFKQMQV-----VGC--------EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTF 466 (856)
Q Consensus 403 ~~~~~---~g~~~~A~~lf~~m~~-----~g~--------~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ 466 (856)
..+.. .|++++|+.+|+++.+ ..- +.+..++..+...+...|++++|..+|+++.+.. |+..
T Consensus 194 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~ 271 (514)
T 2gw1_A 194 LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVN 271 (514)
T ss_dssp HHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHH
Confidence 33333 7888888888888876 311 2235677778888888888888888888888764 3377
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 467 TYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLG 546 (856)
Q Consensus 467 ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~ 546 (856)
++..+...|...|++++|...|+.+.+... .+...|..+...|...|++++|+..|+++..... .+...+..+...+.
T Consensus 272 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 272 SYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHH
Confidence 788888888888888888888888876532 3567788888888888888888888888877542 24557777888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHH---c
Q 003028 547 HCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGL-RPN----VPTCNSLLSAFLR---V 618 (856)
Q Consensus 547 ~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~-~pd----~~t~n~Li~ay~~---~ 618 (856)
..|++++|..+++.+.+.. +.+..++..+...|.+.|++++|...|+++.+..- .++ ...|..+...|.. .
T Consensus 350 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 8888888888888887753 23567788888888888888888888888775321 111 3478888888888 8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHH
Q 003028 619 GQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHM 675 (856)
Q Consensus 619 g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~ 675 (856)
|++++|...|+++++.. ..+..++..+...+...|++++|...++...+..+....
T Consensus 429 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp THHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH
Confidence 88888888888888742 234567777777888888888888888777776664433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-15 Score=173.41 Aligned_cols=390 Identities=10% Similarity=0.039 Sum_probs=281.8
Q ss_pred hhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003028 336 QLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEAL 415 (856)
Q Consensus 336 ~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 415 (856)
..++++.|+..|+.+.+.. +.+...|..+..+|.+.|++++|.+.|+++.+.. +.+...|..+..+|...|++++|+
T Consensus 37 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~ 113 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAM 113 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 4478899999999988643 2467889999999999999999999999998764 347888999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCCHH-----------------------
Q 003028 416 DVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA------GLSPDTF----------------------- 466 (856)
Q Consensus 416 ~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~------g~~pd~~----------------------- 466 (856)
+.|+.+. ..|+. ....+..+...+....|...++++... ...|+..
T Consensus 114 ~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 114 FDLSVLS---LNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHHHHh---cCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 9996432 22332 223344555566667888888887542 1122222
Q ss_pred -------HHHHHHHHHHc--------cCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003028 467 -------TYSVIINCLGK--------AGHLQAAHQLFCEMVNQGCIPN-------LVTYNIMIALQAKARNYQSALKLYR 524 (856)
Q Consensus 467 -------ty~~Li~~y~k--------~g~~~~A~~lf~~m~~~g~~pd-------~~ty~~Li~~~~~~g~~~~A~~ll~ 524 (856)
....+...+.. .|++++|..+|+.+.+.... + ..+|..+...+...|++++|+..|+
T Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 189 YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 22222222222 24789999999999875322 2 2356677788889999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003028 525 DMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPN 604 (856)
Q Consensus 525 ~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd 604 (856)
++.+.. |+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..+.. +.+
T Consensus 268 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 343 (537)
T 3fp2_A 268 ESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PEN 343 (537)
T ss_dssp HHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCC
Confidence 998864 557788888999999999999999999998865 3467889999999999999999999999998753 345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHH---------
Q 003028 605 VPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHM--------- 675 (856)
Q Consensus 605 ~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~--------- 675 (856)
...|..+...|...|++++|+.+|+++.+.. ..+...+..+...+...|++++|...++...+..+....
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 7889999999999999999999999999842 334567888888899999999999999887665421100
Q ss_pred ----HHHhc---CCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 003028 676 ----FLLSM---PSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNV 741 (856)
Q Consensus 676 ----~~~~l---~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~ 741 (856)
.+... ....... +..+.+...++......+. +..++..+...|.+.|++++|.+.|+++.+...
T Consensus 423 ~~a~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDE-EKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHTC----CCH-HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhccchhhhH-hHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 00000 0000000 3445555555554443332 456788999999999999999999999988653
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-14 Score=157.32 Aligned_cols=288 Identities=14% Similarity=0.038 Sum_probs=139.0
Q ss_pred hhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALD 416 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ 416 (856)
.++++.|+..|+.+.... +.+...|..+..++...|++++|...|+.+.+.. +.+...|..+...|...|++++|..
T Consensus 16 ~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 92 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAED 92 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHH
Confidence 355555555555554422 1234455555555555555555555555555431 2244555555555555555555555
Q ss_pred HHHHHHHcCCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 003028 417 VFKQMQVVGCE---PDRVTYCTL------------IDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHL 481 (856)
Q Consensus 417 lf~~m~~~g~~---pd~~ty~~L------------l~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~ 481 (856)
.|+++.+.. + .+...+..+ ...+...|++++|.++++++.+.. +.+..++..+...|...|++
T Consensus 93 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (359)
T 3ieg_A 93 DFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEP 170 (359)
T ss_dssp HHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCH
Confidence 555555432 1 122333322 244555555555555555555442 23445555555555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHHhcC
Q 003028 482 QAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYS------------IVMEVLGHCG 549 (856)
Q Consensus 482 ~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~------------~ll~a~~~~g 549 (856)
++|...|+...+.. +.+..+|..+...|...|++++|...|++..+... .+...+. .+...+...|
T Consensus 171 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 248 (359)
T 3ieg_A 171 RKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDG 248 (359)
T ss_dssp HHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55555555555432 12444555555555555555555555555544321 1111111 1133344555
Q ss_pred ChHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 550 YLDEAEAVFAEMRRKNWVPDE----PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAY 625 (856)
Q Consensus 550 ~~~~A~~l~~~m~~~g~~pd~----~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~ 625 (856)
++++|...++.+.+.... +. ..+..+...|.+.|++++|...|++..+.. +.+..+|..+...|...|++++|.
T Consensus 249 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~ 326 (359)
T 3ieg_A 249 RYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAI 326 (359)
T ss_dssp CHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555443211 11 112334444555555555555555554431 224445555555555555555555
Q ss_pred HHHHHHHH
Q 003028 626 HLLQGMLN 633 (856)
Q Consensus 626 ~l~~~M~~ 633 (856)
+.|+++++
T Consensus 327 ~~~~~a~~ 334 (359)
T 3ieg_A 327 QDYEAAQE 334 (359)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 55555554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-14 Score=152.96 Aligned_cols=309 Identities=11% Similarity=0.033 Sum_probs=257.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLID 438 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~ 438 (856)
++..+..+...+...|++++|...|+.+.+.. +.+...|..+..+|...|++++|+..|+++.+.. +.+...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 35578888999999999999999999998763 3468899999999999999999999999998864 447788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGLS--PDTFTYSVI------------INCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYN 504 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~~--pd~~ty~~L------------i~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~ 504 (856)
.+...|++++|...|+++.+.... .+...+..+ ...+...|++++|.++|+.+.+... .+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHH
Confidence 999999999999999999876320 244455444 5789999999999999999987643 3778899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHH----------
Q 003028 505 IMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYG---------- 574 (856)
Q Consensus 505 ~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~---------- 574 (856)
.+...|...|++++|+..++++.... +.+..++..+...+...|++++|...++...+... .+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHH
Confidence 99999999999999999999998763 34677889999999999999999999999987642 2333333
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 003028 575 --LLVDLWGKAGNVRKAWEWYEAMLQAGLRPNV----PTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKP-SLQTYTLLL 647 (856)
Q Consensus 575 --~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~----~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~P-d~~ty~~Ll 647 (856)
.+...+.+.|++++|...|+++.+.. +.+. ..|..+...|...|++++|+..|++.++. .| +..++..+.
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 313 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 23667999999999999999998753 2233 23556788999999999999999999984 44 678888888
Q ss_pred HHHHhcCCcchHHHHHHHHHHcCCChHH
Q 003028 648 SCCTEARSPYDMGFCHELMAVSGHPAHM 675 (856)
Q Consensus 648 ~a~~~~g~~~~a~~l~~~m~~~g~~~~~ 675 (856)
..+...|++++|...++...+..+....
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 8999999999999999999988775443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-14 Score=157.02 Aligned_cols=290 Identities=13% Similarity=0.027 Sum_probs=235.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 358 HDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 358 pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
.+...+..+...+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+|+++.+.. +.+...|..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 344567788888888999999999999988763 3455667778888899999999999999998764 45677888888
Q ss_pred HHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003028 438 DIHAKAG-FLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNY 516 (856)
Q Consensus 438 ~~~~k~g-~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~ 516 (856)
..+...| ++++|.+.|++..+.. +.+...|..+...|...|++++|.+.|++..+.... +...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 9999999 8999999999998764 345778889999999999999999999998876432 456777788999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--------CCCCHhhHHHHHHHHHhcCCHHH
Q 003028 517 QSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN--------WVPDEPVYGLLVDLWGKAGNVRK 588 (856)
Q Consensus 517 ~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g--------~~pd~~~y~~Li~~~~k~g~~~~ 588 (856)
++|++.|+++.+.. +.+...+..+...+...|++++|...++.+.+.. ......++..+...|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999988764 3356788888899999999999999999887642 13345788999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH-HhcCC
Q 003028 589 AWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS-LQTYTLLLSCC-TEARS 655 (856)
Q Consensus 589 A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd-~~ty~~Ll~a~-~~~g~ 655 (856)
|...|++..+.. +.+...|..+...|.+.|++++|.+.|++.++ +.|+ ...+..+..++ ...|+
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCc
Confidence 999999998753 45678899999999999999999999999886 4564 45566665555 34454
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-14 Score=163.70 Aligned_cols=324 Identities=14% Similarity=0.076 Sum_probs=180.0
Q ss_pred HHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---
Q 003028 333 VLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRAN--- 409 (856)
Q Consensus 333 vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g--- 409 (856)
++...++++.|++.|+.+.... +.+...|..+..++...|++++|...|+.+.. .|+.. +..+..+...+
T Consensus 68 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~ 140 (537)
T 3fp2_A 68 CYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNK 140 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHH
Confidence 3345689999999999998643 34678899999999999999999999974422 23221 11122222222
Q ss_pred ----------------------------------------------------------------------------CHHH
Q 003028 410 ----------------------------------------------------------------------------YLNE 413 (856)
Q Consensus 410 ----------------------------------------------------------------------------~~~~ 413 (856)
++++
T Consensus 141 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 220 (537)
T 3fp2_A 141 QAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTK 220 (537)
T ss_dssp HHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4555
Q ss_pred HHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003028 414 ALDVFKQMQVVGCEPD--------RVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAH 485 (856)
Q Consensus 414 A~~lf~~m~~~g~~pd--------~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~ 485 (856)
|..+|+++.+.. |+ ..+|..+...+...|++++|...|+++.+. .|+..++..+...|...|++++|.
T Consensus 221 A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 296 (537)
T 3fp2_A 221 STDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFF 296 (537)
T ss_dssp HHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHH
T ss_pred HHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHH
Confidence 555555555432 22 123444445555566666666666666554 234555555666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003028 486 QLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN 565 (856)
Q Consensus 486 ~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g 565 (856)
+.|+.+.+... .+..+|..+...|...|++++|+..|+++..... .+...+..+...+...|++++|..+++.+.+..
T Consensus 297 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 297 KFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66666554422 2455566666666666666666666666555431 123455555566666666666666666665543
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHH
Q 003028 566 WVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAG-----LRPNVPTCNSLLSAFLRV----------GQLSDAYHLLQG 630 (856)
Q Consensus 566 ~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g-----~~pd~~t~n~Li~ay~~~----------g~~e~A~~l~~~ 630 (856)
+.+..++..+...|...|++++|...|+++.+.. .......+..+...|... |++++|+..|++
T Consensus 375 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 453 (537)
T 3fp2_A 375 -PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK 453 (537)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHH
Confidence 2234455566666666666666666666654321 111122233344455555 666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 003028 631 MLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 631 M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~ 671 (856)
+++.. ..+...+..+...+...|++++|...++...+..+
T Consensus 454 a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 454 ACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 65521 22344555555556666666666555555554443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.6e-17 Score=192.46 Aligned_cols=115 Identities=14% Similarity=0.169 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 361 HTYTTMVGILGRARQFGAINKLLDQMV---RDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 361 ~~y~~Li~~~~k~g~~~~A~~lf~~m~---~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
.+||+||++|++.|++++|.++|++|. ..|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||.+|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 345555555555555555555554443 22444555555555555555555555555555555555555555555555
Q ss_pred HHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003028 438 DIHAKAGF-LDVAMDMYKKMQAAGLSPDTFTYSVIINCL 475 (856)
Q Consensus 438 ~~~~k~g~-~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y 475 (856)
+++++.|+ .++|.++|++|.+.|+.||..+|+.++..+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 55555444 244445555555555555555555444433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.1e-17 Score=192.19 Aligned_cols=118 Identities=13% Similarity=0.172 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003028 395 VVTYNRLIHSYGRANYLNEALDVFKQMQV---VGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVI 471 (856)
Q Consensus 395 ~~ty~~Li~~~~~~g~~~~A~~lf~~m~~---~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~L 471 (856)
..|||+||++||+.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||..|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 44566666666666666666666655432 355566666666666666666666666666666666666666666666
Q ss_pred HHHHHccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 472 INCLGKAGH-LQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK 512 (856)
Q Consensus 472 i~~y~k~g~-~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~ 512 (856)
|++||+.|+ .++|.++|++|.+.|+.||..+|+.++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 666666555 34555666666666666666666655544333
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.67 E-value=8.1e-15 Score=161.16 Aligned_cols=287 Identities=11% Similarity=-0.009 Sum_probs=153.2
Q ss_pred hChhHHHH-HHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003028 338 QDHTVALG-FFNWLRRQAGFKH--DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEA 414 (856)
Q Consensus 338 ~~~~~Al~-~f~~m~~~~g~~p--d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A 414 (856)
++++.|+. .|........-.| +...+..+...+.+.|++++|..+|+++.+.. +.+...|..+..+|.+.|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 45555665 5553322111111 23456677777778888888888888877653 34666777777778888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHccC
Q 003028 415 LDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSV---------------IINCLGKAG 479 (856)
Q Consensus 415 ~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~---------------Li~~y~k~g 479 (856)
++.|+++.+.. +.+..++..+...|...|++++|.+.|+++...... +...+.. .+..+...|
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 88888777654 446677777777777788888888888777765321 2222211 122222555
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003028 480 HLQAAHQLFCEMVNQGCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVF 558 (856)
Q Consensus 480 ~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~ 558 (856)
++++|..+|+++.+..... +..+|..+...|...|++++|+..|+++.... +.+...+..+...+...|++++|...|
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555555432111 24455555555555555555555555554432 122444555555555555555555555
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003028 559 AEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLR----------PNVPTCNSLLSAFLRVGQLSDAYHLL 628 (856)
Q Consensus 559 ~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~----------pd~~t~n~Li~ay~~~g~~e~A~~l~ 628 (856)
+.+.+.. +.+..++..+..+|.+.|++++|...|++..+..-. ....+|..+..+|...|++++|..++
T Consensus 275 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 275 RRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 5554432 223444555555555555555555555554432100 01344555555555555555555444
Q ss_pred H
Q 003028 629 Q 629 (856)
Q Consensus 629 ~ 629 (856)
+
T Consensus 354 ~ 354 (368)
T 1fch_A 354 A 354 (368)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-13 Score=148.53 Aligned_cols=283 Identities=12% Similarity=0.049 Sum_probs=236.0
Q ss_pred HHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-C
Q 003028 332 QVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRAN-Y 410 (856)
Q Consensus 332 ~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g-~ 410 (856)
..+...++++.|+.+|+.+.+..... ...+..++..+...|++++|..+|+++.+.. +.+...|..+...|...| +
T Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 106 (330)
T 3hym_B 30 ERHYYNCDFKMCYKLTSVVMEKDPFH--ASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHK 106 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC--TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC--hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhh
Confidence 34445589999999999998755433 3467778888999999999999999998863 346788999999999999 9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003028 411 LNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCE 490 (856)
Q Consensus 411 ~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~ 490 (856)
+++|.+.|++..... +.+...|..+...+...|++++|.+.|+++.+.. +.+...+..+...|...|++++|.+.|++
T Consensus 107 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 107 NEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999998764 4567889999999999999999999999998874 33567777899999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003028 491 MVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAG--------FEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMR 562 (856)
Q Consensus 491 m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g--------i~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~ 562 (856)
..+... .+...|..+...|...|++++|+..|+++.+.. ...+..++..+...+...|++++|...++...
T Consensus 185 al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 185 ALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp HHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 987643 367889999999999999999999999887642 13335688899999999999999999999998
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCCHH
Q 003028 563 RKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAF-LRVGQLS 622 (856)
Q Consensus 563 ~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay-~~~g~~e 622 (856)
+.. +.+...+..+...|.+.|++++|...|++..+.. +.+...+..+..++ ...|+.+
T Consensus 264 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 264 VLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred hhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 865 3367889999999999999999999999988643 44778888888888 4555543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-14 Score=159.50 Aligned_cols=289 Identities=10% Similarity=0.030 Sum_probs=229.1
Q ss_pred HhcCCHHHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003028 371 GRARQFGAINK-LLDQMVRDGC-QP--NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFL 446 (856)
Q Consensus 371 ~k~g~~~~A~~-lf~~m~~~g~-~p--d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~ 446 (856)
...|++++|.. .|++...... .| +...|..+...|.+.|++++|+.+|+++.+.. +.+..+|..+..++.+.|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34578888888 7775543211 11 34568889999999999999999999999875 56788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHH
Q 003028 447 DVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNI---------------MIALQA 511 (856)
Q Consensus 447 ~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~---------------Li~~~~ 511 (856)
++|.+.|+++.+.. +.+..++..+...|...|++++|.+.|+.+...... +...+.. .+..+.
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 99999999999874 457899999999999999999999999999876432 2222221 244444
Q ss_pred HcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 003028 512 KARNYQSALKLYRDMQNAGFEP-DKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAW 590 (856)
Q Consensus 512 ~~g~~~~A~~ll~~M~~~gi~p-d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~ 590 (856)
..|++++|+.+|+++.+..... +..++..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999998764322 57888999999999999999999999998864 346789999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---C-------CHHHHHHHHHHHHhcCCcchHH
Q 003028 591 EWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLK---P-------SLQTYTLLLSCCTEARSPYDMG 660 (856)
Q Consensus 591 ~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~---P-------d~~ty~~Ll~a~~~~g~~~~a~ 660 (856)
..|+++.+.. +.+...|..+...|.+.|++++|...|+++++..-. | ...+|..+..++...|+.+++.
T Consensus 272 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999998753 456889999999999999999999999999863111 1 1578999999999999999988
Q ss_pred HHHH
Q 003028 661 FCHE 664 (856)
Q Consensus 661 ~l~~ 664 (856)
.+.+
T Consensus 351 ~~~~ 354 (368)
T 1fch_A 351 AADA 354 (368)
T ss_dssp HHHT
T ss_pred HhHH
Confidence 7754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-14 Score=156.73 Aligned_cols=265 Identities=9% Similarity=-0.052 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI 439 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~ 439 (856)
...|..+...+.+.|++++|..+|+.+.+.. +.+...|..+...|.+.|++++|++.|+++.+.. +.+..+|..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3457888889999999999999999998763 4578889999999999999999999999988764 4568889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGLSPD-----------TFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCI-PNLVTYNIMI 507 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~~pd-----------~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~-pd~~ty~~Li 507 (856)
|...|++++|.+.|+++.+.. |+ ..++..+...|.+.|++++|.++|+++.+.... .+..+|..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999987752 22 223344577788888888888888888775322 1577788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 003028 508 ALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVR 587 (856)
Q Consensus 508 ~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~ 587 (856)
..|...|++++|++.|+++.+.. +.+..+|..+..+|...|++++|...|+.+.+.. +.+..++..+..+|.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 88888888888888888877653 2346677778888888888888888888877653 234677777788888888888
Q ss_pred HHHHHHHHHHHcCC---C--------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 588 KAWEWYEAMLQAGL---R--------PNVPTCNSLLSAFLRVGQLSDAYHLLQG 630 (856)
Q Consensus 588 ~A~~l~~~m~~~g~---~--------pd~~t~n~Li~ay~~~g~~e~A~~l~~~ 630 (856)
+|...|++..+..- . .+...|..+..+|...|+.+.|..+..+
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 88888887765310 0 1256677777777778877777665543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.63 E-value=9.6e-14 Score=149.29 Aligned_cols=265 Identities=8% Similarity=-0.035 Sum_probs=194.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
.+..+...+...|++++|..+|+++.+.. +.+...|..+..+|.+.|++++|.+.|+++.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 45566777778888888888888887653 3467777788888888888888888888887764 446777888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003028 442 KAGFLDVAMDMYKKMQAAGLSPDTFTYSVI--------------IN-CLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIM 506 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~~g~~pd~~ty~~L--------------i~-~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~L 506 (856)
..|++++|.+.++++.+... .+...+..+ .. .+...|++++|.++|+++.+... .+...+..+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 178 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASL 178 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHH
Confidence 88888888888888876532 122222222 22 36777888888888888876533 267788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 003028 507 IALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNV 586 (856)
Q Consensus 507 i~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~ 586 (856)
...|...|++++|++.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|.+.|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 888888888888888888887653 2346677788888888888888888888887754 33567788888888888888
Q ss_pred HHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 587 RKAWEWYEAMLQAGLRP-----------NVPTCNSLLSAFLRVGQLSDAYHLLQGML 632 (856)
Q Consensus 587 ~~A~~l~~~m~~~g~~p-----------d~~t~n~Li~ay~~~g~~e~A~~l~~~M~ 632 (856)
++|...|++..+..... +...|..+..+|.+.|++++|..++++.+
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 88888888877642111 36778888888888888888888876543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.5e-14 Score=156.46 Aligned_cols=266 Identities=11% Similarity=0.006 Sum_probs=214.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
+...|..+...+.+.|++++|+++|+++.+.. +.+..+|..+..+|.+.|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888999999999999999999998875 5678899999999999999999999999999874 446899999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 003028 474 CLGKAGHLQAAHQLFCEMVNQGCI---------PNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFE-PDKVTYSIVME 543 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~~g~~---------pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~-pd~~ty~~ll~ 543 (856)
+|...|++++|.+.|+++.+.... .....+..+...|...|++++|+.+|+++...... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999999875211 01223345578899999999999999999886432 26788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 544 VLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSD 623 (856)
Q Consensus 544 a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~ 623 (856)
.+...|++++|...|+++.+.. +.+..++..+..+|.+.|++++|...|++..+.. +.+..+|..+...|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999864 3468899999999999999999999999998753 4468899999999999999999
Q ss_pred HHHHHHHHHHCC---CCC--------CHHHHHHHHHHHHhcCCcchHHHHH
Q 003028 624 AYHLLQGMLNLG---LKP--------SLQTYTLLLSCCTEARSPYDMGFCH 663 (856)
Q Consensus 624 A~~l~~~M~~~g---~~P--------d~~ty~~Ll~a~~~~g~~~~a~~l~ 663 (856)
|...|+++++.. ..+ +...|..+-.++...|+.+.+..+.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999998621 111 2567888888888888876655543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-11 Score=140.00 Aligned_cols=338 Identities=12% Similarity=0.108 Sum_probs=170.6
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cC
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGR----ARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGR----AN 409 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k----~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~----~g 409 (856)
++.+.|+..|....+. -+...+..|...|.. .+++++|.+.|++..+.| +...+..|-..|.. .+
T Consensus 57 ~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred cCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 3445555555554432 134444455555555 555555555555555432 34444445455544 44
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCH
Q 003028 410 YLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK----AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGK----AGHL 481 (856)
Q Consensus 410 ~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k----~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k----~g~~ 481 (856)
++++|+++|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 5555555555554433 33444444444444 445555555555555442 34445555555544 4555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHH
Q 003028 482 QAAHQLFCEMVNQGCIPNLVTYNIMIALQAK----ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGH----CGYLDE 553 (856)
Q Consensus 482 ~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~----~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~----~g~~~~ 553 (856)
++|.+.|+...+.| +...+..|...|.. .+++++|+.+|++..+.+ +...+..+...|.. .++.++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 55555555554432 33444444444443 455555555555554432 22333334444444 455555
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHH
Q 003028 554 AEAVFAEMRRKNWVPDEPVYGLLVDLWGKA-----GNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVG---QLSDAY 625 (856)
Q Consensus 554 A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~-----g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g---~~e~A~ 625 (856)
|...|+...+.+ +...+..|...|... +++++|..+|++..+.+ +...+..|...|...| ++++|+
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 555555554432 333444444444444 55555555555555432 3344444555554433 445555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 003028 626 HLLQGMLNLGLKPSLQTYTLLLSCCTE----ARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMM 701 (856)
Q Consensus 626 ~l~~~M~~~g~~Pd~~ty~~Ll~a~~~----~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~ 701 (856)
+.|++..+.| +...+..|-..+.. .+++ +.+..+++..
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~-----------------------------------~~A~~~~~~A 393 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDE-----------------------------------QQAAIWMRKA 393 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH-----------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH-----------------------------------HHHHHHHHHH
Confidence 5555555432 33333333333333 2333 3333333333
Q ss_pred hcCCCCchHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCCC
Q 003028 702 HSEDRESKRGLVDAVVDFLHK----SGLKEEAGSVWEVAAQKNV 741 (856)
Q Consensus 702 ~~~~~~~~~~~~~aLi~~y~k----~G~~eeA~~lf~~m~~~~~ 741 (856)
...+ +...+..|..+|.+ .++.++|...|++..+.+.
T Consensus 394 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 394 AEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 3222 34467789999998 8999999999999998874
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-13 Score=144.15 Aligned_cols=262 Identities=11% Similarity=0.005 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003028 395 VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINC 474 (856)
Q Consensus 395 ~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~ 474 (856)
...|..+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3446677888999999999999999998765 5578889999999999999999999999998873 4578899999999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 475 LGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIM--------------IA-LQAKARNYQSALKLYRDMQNAGFEPDKVTYS 539 (856)
Q Consensus 475 y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~L--------------i~-~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~ 539 (856)
|...|++++|.+.|+.+.+.... +...+..+ .. .+...|++++|+.+++++.+.. +.+...+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 99999999999999999876322 22233332 22 3778899999999999998764 33677889
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003028 540 IVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVG 619 (856)
Q Consensus 540 ~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g 619 (856)
.+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++.+.. +.+...|..+...|...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998864 3467889999999999999999999999998753 456889999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcCCcchHHHHHH
Q 003028 620 QLSDAYHLLQGMLNLGLKPS-------------LQTYTLLLSCCTEARSPYDMGFCHE 664 (856)
Q Consensus 620 ~~e~A~~l~~~M~~~g~~Pd-------------~~ty~~Ll~a~~~~g~~~~a~~l~~ 664 (856)
++++|.+.|+++++. .|+ ..++..+..++...|+.++|..+++
T Consensus 255 ~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp CHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999873 344 6788888889999999888877654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-11 Score=142.03 Aligned_cols=402 Identities=9% Similarity=0.032 Sum_probs=268.4
Q ss_pred HHHHHHHH--hhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 328 YQANQVLK--QLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSY 405 (856)
Q Consensus 328 ~~~~~vL~--~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~ 405 (856)
..+..++. ..++.+.|..+|+.+... ++.+...|..++..+.+.|++++|..+|+..... .|++..|..++...
T Consensus 14 ~~w~~l~~~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 14 DAWSILIREAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYV 89 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHH
Confidence 34444443 247889999999999863 3456778999999999999999999999999875 47888888887543
Q ss_pred -HhcCCHHHHHH----HHHHHHH-cCCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003028 406 -GRANYLNEALD----VFKQMQV-VGCEP-DRVTYCTLIDIHAK---------AGFLDVAMDMYKKMQAAGLSPDTFTYS 469 (856)
Q Consensus 406 -~~~g~~~~A~~----lf~~m~~-~g~~p-d~~ty~~Ll~~~~k---------~g~~~~A~~l~~~m~~~g~~pd~~ty~ 469 (856)
...|+.++|.+ +|++... .|..| +...|...+....+ .|+++.|..+|++.++.........|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 34566666655 7776654 35444 45677777776655 688999999999998731111123443
Q ss_pred HHHHHH-------------HccCCHHHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHHHHc----CC
Q 003028 470 VIINCL-------------GKAGHLQAAHQLFCEMV------NQG---CIPN--------LVTYNIMIALQAKA----RN 515 (856)
Q Consensus 470 ~Li~~y-------------~k~g~~~~A~~lf~~m~------~~g---~~pd--------~~ty~~Li~~~~~~----g~ 515 (856)
...... .+.++++.|..++..+. +.. ++|+ ...|...+...... ++
T Consensus 170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~ 249 (530)
T 2ooe_A 170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 249 (530)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence 322211 13456777887777632 111 2333 24566655443332 22
Q ss_pred H----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHcCCCCCHhhHHHHH
Q 003028 516 Y----QSALKLYRDMQNAGFEPDKVTYSIVMEVLGH-------CGYLD-------EAEAVFAEMRRKNWVPDEPVYGLLV 577 (856)
Q Consensus 516 ~----~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~-------~g~~~-------~A~~l~~~m~~~g~~pd~~~y~~Li 577 (856)
. .++..+|++..... +-+...|......+.. .|+++ +|..+|+...+.-.+-+...+..++
T Consensus 250 ~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 250 QTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA 328 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2 47788898887752 3356677777777765 68887 8999999988632334688899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhc
Q 003028 578 DLWGKAGNVRKAWEWYEAMLQAGLRPN-V-PTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS-LQTYTLLLSC-CTEA 653 (856)
Q Consensus 578 ~~~~k~g~~~~A~~l~~~m~~~g~~pd-~-~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd-~~ty~~Ll~a-~~~~ 653 (856)
..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++.++. .|+ ...|...... +...
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHc
Confidence 9999999999999999999984 454 3 58999999999999999999999999874 333 2333322222 3357
Q ss_pred CCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcC-CCCc--hHHHHHHHHHHHHhCCChhHHH
Q 003028 654 RSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSE-DRES--KRGLVDAVVDFLHKSGLKEEAG 730 (856)
Q Consensus 654 g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~-~~~~--~~~~~~aLi~~y~k~G~~eeA~ 730 (856)
|+.++|..+++...+..+....++..+....... +..+.+..+++..... ...| ...+|..++....+.|+.+.+.
T Consensus 405 ~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~-g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL-NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT-TCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred CChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhC-CCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8889999998887776554333332222111112 2345555555554433 2222 2447778888888888888888
Q ss_pred HHHHHHHhC
Q 003028 731 SVWEVAAQK 739 (856)
Q Consensus 731 ~lf~~m~~~ 739 (856)
.+++++.+.
T Consensus 484 ~~~~r~~~~ 492 (530)
T 2ooe_A 484 KVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.5e-13 Score=141.36 Aligned_cols=255 Identities=13% Similarity=0.059 Sum_probs=172.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003028 368 GILGRARQFGAINKLLDQMVRDGCQPNV--VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF 445 (856)
Q Consensus 368 ~~~~k~g~~~~A~~lf~~m~~~g~~pd~--~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~ 445 (856)
+-....|++..|...++..... .|+. .....+..+|...|++++|+..++.. -.|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 3344567777777776655332 2332 24455667777788887777766442 25566777777777777777
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003028 446 LDVAMDMYKKMQAAGLSP-DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYR 524 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g~~p-d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~ 524 (856)
.++|++.++++...+..| +...+..+...|...|++++|.+.|++ +.+...+..+...|.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888777765434 455556666777788888888887776 3467777777788888888888888888
Q ss_pred HHHHcCCCCCHHHHHHH----HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003028 525 DMQNAGFEPDKVTYSIV----MEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAG 600 (856)
Q Consensus 525 ~M~~~gi~pd~~ty~~l----l~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g 600 (856)
++.+.. |+.. ...+ +..+...|++++|..+|+++.+.. +.+...++.+..+|.+.|++++|...|++..+..
T Consensus 155 ~~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 155 KMQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 877653 4422 2222 233334477888888888887753 4567777788888888888888888888877642
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCCCCCCHH
Q 003028 601 LRPNVPTCNSLLSAFLRVGQLSD-AYHLLQGMLNLGLKPSLQ 641 (856)
Q Consensus 601 ~~pd~~t~n~Li~ay~~~g~~e~-A~~l~~~M~~~g~~Pd~~ 641 (856)
+-+..+|..++..+...|+.++ +.++++++++ +.|+..
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~ 269 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP 269 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence 4467777788888888887765 4677777776 455543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=160.24 Aligned_cols=240 Identities=13% Similarity=0.165 Sum_probs=94.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003028 372 RARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMD 451 (856)
Q Consensus 372 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~ 451 (856)
+.|++++|.++++++.. ..+|..|..++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 56778888888887732 247888888888888888888888653 566788888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003028 452 MYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGF 531 (856)
Q Consensus 452 l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi 531 (856)
+++...+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 77666553 4456778888888888888888887774 266778888888888888888888888866
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003028 532 EPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSL 611 (856)
Q Consensus 532 ~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~L 611 (856)
..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+ ..++.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 36788888888888888888888877 26778888888888888888885554432 2344445568
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003028 612 LSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEA 653 (856)
Q Consensus 612 i~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~ 653 (856)
+..|.+.|++++|+.+++..+... .-....|+-|--++++-
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc
Confidence 888888888888888888877533 33345565555555554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.5e-12 Score=142.23 Aligned_cols=366 Identities=10% Similarity=-0.040 Sum_probs=237.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRD--------GCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVV-----G 425 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~--------g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~-----g 425 (856)
....||.|..++...|++++|++.|++..+. .-+....+|+.+...|...|++++|...|++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567899999999999999999999876541 11234678999999999999999999999887542 1
Q ss_pred -C-CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHccCCHHHHHHHHHHHHHcCCCC
Q 003028 426 -C-EPDRVTYCTLIDIHAKA--GFLDVAMDMYKKMQAAGLSPDTFTYSVIINC---LGKAGHLQAAHQLFCEMVNQGCIP 498 (856)
Q Consensus 426 -~-~pd~~ty~~Ll~~~~k~--g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~---y~k~g~~~~A~~lf~~m~~~g~~p 498 (856)
. .....+|..+..++.+. +++++|++.|++..+.. +-+...+..+..+ +...++.++|.+.|++..+... .
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-D 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-c
Confidence 0 12345666665555554 46899999999988763 2245555554444 4456777888888887776532 2
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHH
Q 003028 499 NLVTYNIMIALQAK----ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYG 574 (856)
Q Consensus 499 d~~ty~~Li~~~~~----~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~ 574 (856)
+...+..+...+.. .+++++|.+++++..... +.+...+..+...|...|++++|...++...+.. +-+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 55566655555544 466788999998887653 3346678888889999999999999999988754 23556666
Q ss_pred HHHHHHHhc-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003028 575 LLVDLWGKA-------------------GNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLG 635 (856)
Q Consensus 575 ~Li~~~~k~-------------------g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g 635 (856)
.+...|... +.++.|...|+...+.. +.+...|..+...|...|++++|++.|++.++..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 666555432 23567788888777643 3456678889999999999999999999999854
Q ss_pred CCCCHH--HHHHHHH-HHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHH
Q 003028 636 LKPSLQ--TYTLLLS-CCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGL 712 (856)
Q Consensus 636 ~~Pd~~--ty~~Ll~-a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~ 712 (856)
..|... .+..+.. .....|+.++|...+++..+..+....... ....+..+.+......+ .+..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~-----------~~~~l~~~~~~~l~~~p-~~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK-----------MKDKLQKIAKMRLSKNG-ADSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH-----------HHHHHHHHHHHHHHHCC--CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH-----------HHHHHHHHHHHHHHhCC-CCHHH
Confidence 333221 1222222 234678888999888888777664432211 22333444443332222 24557
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 003028 713 VDAVVDFLHKSGLKEEAGSVWEVAAQKNV 741 (856)
Q Consensus 713 ~~aLi~~y~k~G~~eeA~~lf~~m~~~~~ 741 (856)
|..|+..|...|++++|++.|++..+.+.
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999988653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-12 Score=140.04 Aligned_cols=254 Identities=13% Similarity=0.119 Sum_probs=202.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 003028 402 IHSYGRANYLNEALDVFKQMQVVGCEPDR--VTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAG 479 (856)
Q Consensus 402 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~--~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g 479 (856)
|+-....|+++.|+..+++.... .|+. .....+..+|...|+++.|+..++. .-+|+..++..+...|...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34456689999999999876543 3443 4566778999999999999987754 24567888999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003028 480 HLQAAHQLFCEMVNQGCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVF 558 (856)
Q Consensus 480 ~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~ 558 (856)
+.++|.+.++++...+..| +...+..+...|...|++++|++.|++ ..+...+..+...+.+.|+.++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998876545 556667777999999999999999987 456778899999999999999999999
Q ss_pred HHHHHcCCCCCHhhH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003028 559 AEMRRKNWVPDEPVY---GLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLG 635 (856)
Q Consensus 559 ~~m~~~g~~pd~~~y---~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g 635 (856)
+.+.+.. |+...+ ..++..+...|++++|..+|+++.+. .+.+...|+.+..+|.+.|++++|...|++.++..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999864 443221 22344455669999999999999987 46789999999999999999999999999999842
Q ss_pred CCCCHHHHHHHHHHHHhcCCcch-HHHHHHHHHHcCC
Q 003028 636 LKPSLQTYTLLLSCCTEARSPYD-MGFCHELMAVSGH 671 (856)
Q Consensus 636 ~~Pd~~ty~~Ll~a~~~~g~~~~-a~~l~~~m~~~g~ 671 (856)
.-+..++..+...+...|+.++ +..+++.+.+..+
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 2356788888888888888754 3456555554443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.55 E-value=5.1e-14 Score=156.66 Aligned_cols=257 Identities=11% Similarity=0.096 Sum_probs=114.0
Q ss_pred HHHHHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003028 329 QANQVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRA 408 (856)
Q Consensus 329 ~~~~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~ 408 (856)
....+|..+++.+.|.++++.+.. +.+|..|..++.+.|++++|.+.|.+. +|..+|..++..+...
T Consensus 8 a~~~ll~~~~~ld~A~~fae~~~~-------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 8 AVQVLIEHIGNLDRAYEFAERCNE-------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHccCHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC
Confidence 355678888999999999998843 349999999999999999999999642 5778999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003028 409 NYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLF 488 (856)
Q Consensus 409 g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf 488 (856)
|++++|+.+++...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|
T Consensus 75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y 145 (449)
T 1b89_A 75 GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLY 145 (449)
T ss_dssp ------------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999988777663 5667889999999999999999998885 367789999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003028 489 CEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVP 568 (856)
Q Consensus 489 ~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~p 568 (856)
..+ ..|..|+.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +..
T Consensus 146 ~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~ 205 (449)
T 1b89_A 146 NNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVV 205 (449)
T ss_dssp HHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTT
T ss_pred HHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHh
Confidence 977 36999999999999999999999988 2788999999999999999999655443 333
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 003028 569 DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRV--GQLSDAYHLL 628 (856)
Q Consensus 569 d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~--g~~e~A~~l~ 628 (856)
++.-...++..|.+.|.+++|..+++...... +-....|+.|...|++- +++.+.+++|
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44556679999999999999999999988654 56678888888888865 2344444444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-10 Score=134.62 Aligned_cols=307 Identities=13% Similarity=0.104 Sum_probs=260.9
Q ss_pred hhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----c
Q 003028 337 LQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGR----ARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGR----A 408 (856)
Q Consensus 337 l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k----~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~----~ 408 (856)
.++.+.|++.|+..... | +...+..|..+|.. .+++++|...|+...+.| +...+..|...|.. .
T Consensus 92 ~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALK-G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 46888999999998753 2 67788889899988 889999999999998864 67788888888887 7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCC
Q 003028 409 NYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK----AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGK----AGH 480 (856)
Q Consensus 409 g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k----~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k----~g~ 480 (856)
+++++|++.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++
T Consensus 165 ~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 89999999999998865 67888889999988 899999999999998875 66788888888886 889
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCh
Q 003028 481 LQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK----ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHC-----GYL 551 (856)
Q Consensus 481 ~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~----~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~-----g~~ 551 (856)
+++|.++|+...+.| +...+..|...|.. .+++++|++.|++..+.| +...+..+...|... ++.
T Consensus 239 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCH
Confidence 999999999998763 56777778888888 899999999999998765 455677777888777 899
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 003028 552 DEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAG---NVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR----VGQLSDA 624 (856)
Q Consensus 552 ~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g---~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~----~g~~e~A 624 (856)
++|...|+...+.+ +...+..|...|...| ++++|.++|++..+.+ +...+..|...|.. .+++++|
T Consensus 313 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 386 (490)
T 2xm6_A 313 EQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQA 386 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 99999999999875 5567888888888766 8899999999999864 78899999999999 8999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHcCC
Q 003028 625 YHLLQGMLNLGLKPSLQTYTLLLSCCTE----ARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 625 ~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~----~g~~~~a~~l~~~m~~~g~ 671 (856)
+..|++..+.+ +...+..|-..+.. .++.++|...++...+.++
T Consensus 387 ~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 387 AIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999865 56677777777776 7888888888888877764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-11 Score=142.55 Aligned_cols=374 Identities=9% Similarity=0.069 Sum_probs=263.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 358 HDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 358 pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
-+...|..++.. .+.|++++|..+|+.+.+. .+.+...|..++..+.+.|++++|..+|+++... .|+...|..++
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 367789999984 7899999999999999975 4557889999999999999999999999999875 47877887777
Q ss_pred HHH-HHcCCHHHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHHcCCCCCHH
Q 003028 438 DIH-AKAGFLDVAMD----MYKKMQAA-GLSP-DTFTYSVIINCLGK---------AGHLQAAHQLFCEMVNQGCIPNLV 501 (856)
Q Consensus 438 ~~~-~k~g~~~~A~~----l~~~m~~~-g~~p-d~~ty~~Li~~y~k---------~g~~~~A~~lf~~m~~~g~~pd~~ 501 (856)
... ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|.++|++..+........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 35677776665 77776553 5443 56788887776654 789999999999998741111123
Q ss_pred HHHHHHHHH-------------HHcCCHHHHHHHHHHHHH------cC---CCCC--------HHHHHHHHHHHHhc---
Q 003028 502 TYNIMIALQ-------------AKARNYQSALKLYRDMQN------AG---FEPD--------KVTYSIVMEVLGHC--- 548 (856)
Q Consensus 502 ty~~Li~~~-------------~~~g~~~~A~~ll~~M~~------~g---i~pd--------~~ty~~ll~a~~~~--- 548 (856)
.|....... .+.+++.+|..++.++.. .. +.|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 444332211 124567778777776431 11 2443 23444444332221
Q ss_pred -CCh----HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHH
Q 003028 549 -GYL----DEAEAVFAEMRRKNWVPDEPVYGLLVDLWGK-------AGNVR-------KAWEWYEAMLQAGLRPNVPTCN 609 (856)
Q Consensus 549 -g~~----~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k-------~g~~~-------~A~~l~~~m~~~g~~pd~~t~n 609 (856)
++. ..+..+|++..... +.+...|..+...+.+ .|+++ +|..+|++..+.-.+.+...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 232 36778898888753 3467888888888775 79987 8999999988632345689999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC-hHHHHHhcCCCCCC
Q 003028 610 SLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL--QTYTLLLSCCTEARSPYDMGFCHELMAVSGHP-AHMFLLSMPSPGPD 686 (856)
Q Consensus 610 ~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~--~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~-~~~~~~~l~~~~~~ 686 (856)
.++..+.+.|++++|..+|+++++ +.|+. ..|..+...+.+.|+.++|..+++...+..+. .+.++......+..
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 999999999999999999999998 45653 47888888888899999999999988876553 22222111000001
Q ss_pred cccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003028 687 GQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKN 740 (856)
Q Consensus 687 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~ 740 (856)
.+ ..+.+..+++......+ .+..+|..+++++.+.|+.++|..+|++....+
T Consensus 404 ~~-~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 404 SK-DKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp TC-CHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred cC-ChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 12 23555555554433322 246778999999999999999999999999874
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-11 Score=128.20 Aligned_cols=222 Identities=14% Similarity=0.092 Sum_probs=124.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGL--SPD----TFTYSVI 471 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~--~pd----~~ty~~L 471 (856)
|..+...+...|++++|+.+|+++.+.. .+...|..+..+|...|++++|.+.+++..+... .++ ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3444444444444444444444444433 3444444444444444445544444444443210 011 3445555
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 003028 472 INCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYL 551 (856)
Q Consensus 472 i~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~ 551 (856)
...|...|++++|...|++..+.. |+. ..+...|++++|+..++++.... +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 555555555555555555555431 221 23444555666666666655532 11234555566666666777
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 552 DEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGM 631 (856)
Q Consensus 552 ~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M 631 (856)
++|...++.+.+.. +.+..++..+...|.+.|++++|...|++..+.. +.+...|..+...|...|++++|...|++.
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777776666543 2356667777777777777777777777777642 345677777777888888888888887777
Q ss_pred HH
Q 003028 632 LN 633 (856)
Q Consensus 632 ~~ 633 (856)
++
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-11 Score=125.66 Aligned_cols=226 Identities=14% Similarity=0.043 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGC--EPD----RVTY 433 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~--~pd----~~ty 433 (856)
...|..+...+...|++++|..+|++..+.. .+...|..+..+|...|++++|++.|++..+... .++ ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3478888999999999999999999999876 7888999999999999999999999999876431 112 5788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003028 434 CTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKA 513 (856)
Q Consensus 434 ~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~ 513 (856)
..+...|...|++++|...|++..+. .|+. ..+.+.|++++|...++.+..... .+...|..+...|...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHh
Confidence 99999999999999999999999885 3443 456677889999999999887532 2566788899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 003028 514 RNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWY 593 (856)
Q Consensus 514 g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~ 593 (856)
|++++|+..|+++.... +.+...+..+...+...|++++|...++...+.. +.+...+..+...|.+.|++++|...|
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999998764 3357788899999999999999999999998865 346788999999999999999999999
Q ss_pred HHHHHc
Q 003028 594 EAMLQA 599 (856)
Q Consensus 594 ~~m~~~ 599 (856)
++..+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988763
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-10 Score=140.37 Aligned_cols=318 Identities=14% Similarity=0.112 Sum_probs=224.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK 442 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k 442 (856)
..-+...+...|.+++|..+|++.. ......+.++. ..+++++|.+++++. -+..+|..+..++.+
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHh
Confidence 3446777778888888888887753 12223344433 667788888888765 246778888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 443 AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKL 522 (856)
Q Consensus 443 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l 522 (856)
.|++++|.+.|.+. -|...|.-++.+|.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+
T Consensus 1118 ~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH
Confidence 88888888888553 467778888888888888888888888766543 2332333488888888887754433
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003028 523 YRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLR 602 (856)
Q Consensus 523 l~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~ 602 (856)
+ + .++...|..+...|...|++++|..+|... ..|..+...|++.|+++.|.+.+++.
T Consensus 1190 I----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------ 1247 (1630)
T 1xi4_A 1190 I----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------ 1247 (1630)
T ss_pred H----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------
Confidence 2 1 345566677888888888888888888874 36888888888888888888888766
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHH---h
Q 003028 603 PNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLL---S 679 (856)
Q Consensus 603 pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~---~ 679 (856)
.+..+|..+-.+|...|++..|...... +..+...+..++..|...|.+++|..+++...... +.|.-+. .
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELa 1321 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 1321 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHH
Confidence 3668888888888888888888776543 33455666678888888888888888887666555 3443322 1
Q ss_pred cCCCCCCcccHHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHHhCCChhHHH
Q 003028 680 MPSPGPDGQNVRDHVGSFLEMMHSED---RESKRGLVDAVVDFLHKSGLKEEAG 730 (856)
Q Consensus 680 l~~~~~~~~~~~~~a~~l~~~~~~~~---~~~~~~~~~aLi~~y~k~G~~eeA~ 730 (856)
.+......++..+++..++..+.... ..-+..+|.-++-.|.+.|+++.|.
T Consensus 1322 iLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 12222344566777777776654321 1125678999999999999999998
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-10 Score=120.86 Aligned_cols=197 Identities=13% Similarity=0.041 Sum_probs=100.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 433 YCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK 512 (856)
Q Consensus 433 y~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~ 512 (856)
|..+...+...|++++|.++|+++.+.. +.+..++..+...|...|++++|.++|+++.+... .+...|..+...|..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHH
Confidence 3334444444444444444444444331 22344444444444445555555555544443321 134444555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 003028 513 ARNYQSALKLYRDMQNAGFEPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWE 591 (856)
Q Consensus 513 ~g~~~~A~~ll~~M~~~gi~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~ 591 (856)
.|++++|+++|+++...+..|+ ...+..+...+...|++++|...++++.+.. ..+...+..+...|...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555544222232 3344445555555555555555555555433 2234555666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 592 WYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 592 l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+|+++.+.. +.+...+..+...|...|++++|.++++++.+
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666665432 34455566666666666666666666666665
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.7e-10 Score=117.49 Aligned_cols=220 Identities=12% Similarity=0.064 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003028 396 VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK----AGFLDVAMDMYKKMQAAGLSPDTFTYSVI 471 (856)
Q Consensus 396 ~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k----~g~~~~A~~l~~~m~~~g~~pd~~ty~~L 471 (856)
..+..+...|...|++++|++.|++..+. -+...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 33444444444444555555544444441 123344444444444 445555555554444443 34444444
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 472 INCLGK----AGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK----ARNYQSALKLYRDMQNAGFEPDKVTYSIVME 543 (856)
Q Consensus 472 i~~y~k----~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~----~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~ 543 (856)
...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 444444 455555555555444432 34444444444444 455555555555444433 2233333334
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 544 VLGH----CGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGK----AGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAF 615 (856)
Q Consensus 544 a~~~----~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k----~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay 615 (856)
.|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 4433 444444444444444432 23344444444444 455555555555444432 234444444444
Q ss_pred HH----cCCHHHHHHHHHHHHH
Q 003028 616 LR----VGQLSDAYHLLQGMLN 633 (856)
Q Consensus 616 ~~----~g~~e~A~~l~~~M~~ 633 (856)
.. .+++++|++.|++..+
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHH
Confidence 44 4455555555544444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-10 Score=116.13 Aligned_cols=201 Identities=10% Similarity=0.005 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003028 395 VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINC 474 (856)
Q Consensus 395 ~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~ 474 (856)
...|..+...+...|++++|.+.|+++.+.. +.+...|..+...|...|++++|.++|+++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 4445555555566666666666665555442 3334455555555555555555555555555432 2244445555555
Q ss_pred HHcc-CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 003028 475 LGKA-GHLQAAHQLFCEMVNQGCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLD 552 (856)
Q Consensus 475 y~k~-g~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~ 552 (856)
|... |++++|.++|+.+.+.+..| +...|..+...|...|++++|+..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---------------------------- 137 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLK---------------------------- 137 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHH----------------------------
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH----------------------------
Confidence 5555 55555555555554421111 13344444444444444444444444
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 553 EAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGML 632 (856)
Q Consensus 553 ~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~ 632 (856)
++.+.. ..+...+..+...|.+.|++++|..+|+++.+.....+...+..+...+...|+.++|..+++.+.
T Consensus 138 -------~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 138 -------RSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp -------HHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------HHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 444332 113444555555555555555555555555543211344455555555555555555555555554
Q ss_pred H
Q 003028 633 N 633 (856)
Q Consensus 633 ~ 633 (856)
+
T Consensus 210 ~ 210 (225)
T 2vq2_A 210 A 210 (225)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.8e-10 Score=113.84 Aligned_cols=203 Identities=10% Similarity=0.026 Sum_probs=167.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLID 438 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~ 438 (856)
+...|..+...+...|++++|.++|+.+.+.. +.+...|..+...|...|++++|.++|+++.... +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45678888999999999999999999998753 3468889999999999999999999999998764 557788999999
Q ss_pred HHHHc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003028 439 IHAKA-GFLDVAMDMYKKMQAAGLSP-DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNY 516 (856)
Q Consensus 439 ~~~k~-g~~~~A~~l~~~m~~~g~~p-d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~ 516 (856)
.+... |++++|...++++.+.+..| +...+..+..+|...|++++|...|+++.+... .+...+..+...|...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence 99999 99999999999998833333 367788899999999999999999999887632 2577888888999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003028 517 QSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK 564 (856)
Q Consensus 517 ~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~ 564 (856)
++|..+|+++.......+...+..+...+...|+.+.+..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999998877543245666777777777888888888888887654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-09 Score=113.12 Aligned_cols=232 Identities=13% Similarity=0.051 Sum_probs=202.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 429 DRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGK----AGHLQAAHQLFCEMVNQGCIPNLVTYN 504 (856)
Q Consensus 429 d~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k----~g~~~~A~~lf~~m~~~g~~pd~~ty~ 504 (856)
+..++..+...|...|++++|++.|++..+. -+...+..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5677888889999999999999999999984 366788889999999 999999999999999875 788899
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 003028 505 IMIALQAK----ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGH----CGYLDEAEAVFAEMRRKNWVPDEPVYGLL 576 (856)
Q Consensus 505 ~Li~~~~~----~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~----~g~~~~A~~l~~~m~~~g~~pd~~~y~~L 576 (856)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 99999999 999999999999998875 67788888889998 999999999999999876 56788888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 577 VDLWGK----AGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR----VGQLSDAYHLLQGMLNLGLKPSLQTYTLLLS 648 (856)
Q Consensus 577 i~~~~k----~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~----~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~ 648 (856)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+-.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888988 999999999999999864 67888999999999 999999999999999864 2667777777
Q ss_pred HHHh----cCCcchHHHHHHHHHHcCCChHHHHH
Q 003028 649 CCTE----ARSPYDMGFCHELMAVSGHPAHMFLL 678 (856)
Q Consensus 649 a~~~----~g~~~~a~~l~~~m~~~g~~~~~~~~ 678 (856)
.+.. .++.++|...+++..+.+++......
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888 89999999999999988875544433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-11 Score=127.78 Aligned_cols=245 Identities=11% Similarity=0.013 Sum_probs=114.1
Q ss_pred CCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 374 RQFGAINKLLDQMVRDGCQ---PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAM 450 (856)
Q Consensus 374 g~~~~A~~lf~~m~~~g~~---pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~ 450 (856)
|++++|...|+++.+.... .+...|..+...|...|++++|++.|+++.+.. +.+..+|..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555443110 123344555555555555555555555554432 234455555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003028 451 DMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAG 530 (856)
Q Consensus 451 ~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g 530 (856)
+.|+++++.. +.+..++..+..+|.+.|++++|.+.|+++.+. .|+...+..++..+...|++++|+..+.+.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 5555555432 223445555555555555555555555555543 2232233333333344455555555555444332
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003028 531 FEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWV---PDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPT 607 (856)
Q Consensus 531 i~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~---pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t 607 (856)
+++...+ .++..+...++.++|...+....+.... .+..++..+...|.+.|++++|...|++..+. .|+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN-- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--
Confidence 1222222 2444444455555555555544332110 01345555556666666666666666666543 2321
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 003028 608 CNSLLSAFLRVGQLSDAYHLL 628 (856)
Q Consensus 608 ~n~Li~ay~~~g~~e~A~~l~ 628 (856)
+.....++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 222234455555555555444
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-10 Score=118.79 Aligned_cols=200 Identities=10% Similarity=0.009 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI 439 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~ 439 (856)
...|..+...+...|++++|..+|+++.+.. +.+...|..+...|...|++++|.+.|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556666777777777777777777766542 2356666666677777777777777777666543 3345566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGLSP-DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQS 518 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~~p-d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~ 518 (856)
|...|++++|.++|+++.+.+..| +...+..+...|...|++++|.+.|++..+... .+...|..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665522222 344455555555556666666666655554321 134455555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003028 519 ALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 519 A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~ 563 (856)
|..+|+++.+.. +.+...+..+...+...|+.++|.++++.+.+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555554422 12333444444444445555555555554444
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.7e-11 Score=120.38 Aligned_cols=90 Identities=19% Similarity=0.130 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 538 YSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR 617 (856)
Q Consensus 538 y~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~ 617 (856)
+..+..++...|++++|...|++..+.. .+...+..+..+|...|++++|...|++..+.. +.+...+..+...|.+
T Consensus 121 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 121 HLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLL 197 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 3333334444444444444444444333 233444444444444444444444444444321 2233344444444444
Q ss_pred cCCHHHHHHHHHH
Q 003028 618 VGQLSDAYHLLQG 630 (856)
Q Consensus 618 ~g~~e~A~~l~~~ 630 (856)
.|++++|+..|++
T Consensus 198 ~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 198 KGKAEEAARAAAL 210 (217)
T ss_dssp -------------
T ss_pred ccCHHHHHHHHHH
Confidence 4444444444433
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.35 E-value=9e-11 Score=119.86 Aligned_cols=199 Identities=16% Similarity=0.004 Sum_probs=127.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 393 PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVII 472 (856)
Q Consensus 393 pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li 472 (856)
++...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..|++.++.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 456667777777777777777777777776653 4456677777777777777777777777777653 33566777777
Q ss_pred HHHHcc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003028 473 NCLGKA-----------GHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIV 541 (856)
Q Consensus 473 ~~y~k~-----------g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~l 541 (856)
.+|.+. |++++|...|++..+.... +...|..+...|...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 7777777777777664322 45666677777777777777777777776665 556666677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 542 MEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 542 l~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
..++...|++++|...|+...+.. +.+...+..+...+.+.|++++|...|++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 777777777777777777776643 2355666677777777777777777776654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-10 Score=121.05 Aligned_cols=228 Identities=12% Similarity=0.034 Sum_probs=103.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccC
Q 003028 402 IHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSP--DTFTYSVIINCLGKAG 479 (856)
Q Consensus 402 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~p--d~~ty~~Li~~y~k~g 479 (856)
...+...|++++|+..|++..+.. +.+...+..+..+|...|++++|++.+++..+....+ ...+|..+...|...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 334444444444444444444332 1223344444444444444444444444444421111 1222444444455555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003028 480 HLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFA 559 (856)
Q Consensus 480 ~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~ 559 (856)
++++|.+.|+...+.... +...|..+...|...|++++|+..|++..+.. +.+...+..+...+...+++++|...|+
T Consensus 89 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555544443211 33445555555555555555555555444331 1123333333312223335555555555
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003028 560 EMRRKNWVPDEPVYGLLVDLWGKAGN---VRKAWEWYEAMLQAG-LRPN------VPTCNSLLSAFLRVGQLSDAYHLLQ 629 (856)
Q Consensus 560 ~m~~~g~~pd~~~y~~Li~~~~k~g~---~~~A~~l~~~m~~~g-~~pd------~~t~n~Li~ay~~~g~~e~A~~l~~ 629 (856)
.+.+.. +.+...+..+...+...|+ +++|...|++..+.. -.|+ ...|..+...|...|++++|++.|+
T Consensus 167 ~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 167 KVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555432 1123444444555555554 444555555544320 0122 2355566666666666666666666
Q ss_pred HHHH
Q 003028 630 GMLN 633 (856)
Q Consensus 630 ~M~~ 633 (856)
+.++
T Consensus 246 ~al~ 249 (272)
T 3u4t_A 246 NILA 249 (272)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6665
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.33 E-value=9.3e-09 Score=126.69 Aligned_cols=260 Identities=12% Similarity=0.164 Sum_probs=177.9
Q ss_pred CCCHHHHHHHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 324 SMDAYQANQVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIH 403 (856)
Q Consensus 324 ~~~~~~~~~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~ 403 (856)
..+...+..++..++.+++|..+|+... -.....+.++. ..+++++|.++.++. -+..+|..+..
T Consensus 1049 ~~d~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAK 1113 (1630)
T 1xi4_A 1049 NYDAPDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAK 1113 (1630)
T ss_pred hccHHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHH
Confidence 3445556666677788888888887652 12222333333 667788888877644 24667788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003028 404 SYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQA 483 (856)
Q Consensus 404 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~ 483 (856)
++.+.|++++|.+.|.+. -|...|..++..|.+.|++++|.++|...++.. ++....+.++.+|++.+++++
T Consensus 1114 Aql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rlee 1185 (1630)
T 1xi4_A 1114 AQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAE 1185 (1630)
T ss_pred HHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHH
Confidence 888888888888888553 466777778888888888888888887766643 333344457788888887775
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003028 484 AHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 484 A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~ 563 (856)
...+. + .++...|..+...|...|++++|..+|... ..|..+...+++.|++++|.+.++..
T Consensus 1186 le~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-- 1247 (1630)
T 1xi4_A 1186 LEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-- 1247 (1630)
T ss_pred HHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--
Confidence 44332 2 246666777778888888888888888774 36777888888888888888877755
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 564 KNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 564 ~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.+..+|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+.
T Consensus 1248 ----~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1248 ----NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred ----CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 24466777777777777777777665543 23555666777777777777777777766654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-09 Score=122.06 Aligned_cols=300 Identities=9% Similarity=-0.035 Sum_probs=209.9
Q ss_pred HHHHhhhChhHHHHHHHHHHHh----CC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CC-CCHHH
Q 003028 332 QVLKQLQDHTVALGFFNWLRRQ----AG---FKHDEHTYTTMVGILGRARQFGAINKLLDQMVRD-----G-CQ-PNVVT 397 (856)
Q Consensus 332 ~vL~~l~~~~~Al~~f~~m~~~----~g---~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~-----g-~~-pd~~t 397 (856)
.+....+++++|++.|+...+. .+ ......+|+.+..+|...|++++|...|++..+. + .. ....+
T Consensus 59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~ 138 (472)
T 4g1t_A 59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHH
Confidence 3445668999999999876431 11 2234678999999999999999999999887642 1 01 23556
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 398 YNRLIHSYGRA--NYLNEALDVFKQMQVVGCEPDRVTYCTLIDI---HAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVII 472 (856)
Q Consensus 398 y~~Li~~~~~~--g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~---~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li 472 (856)
|..+..++... +++++|++.|++..+.. +-+...+..+..+ +...++.++|++.|++.++.. +.+..++..+.
T Consensus 139 ~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~ 216 (472)
T 4g1t_A 139 DCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLA 216 (472)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHH
Confidence 66666555554 57999999999998764 3345555555444 345678889999999988763 34566666665
Q ss_pred HHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-
Q 003028 473 NCLGK----AGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGH- 547 (856)
Q Consensus 473 ~~y~k----~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~- 547 (856)
..+.. .+++++|.+++++...... .+...+..+...|...|++++|++.|++..+... -+..++..+...|..
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAK 294 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 55544 4678899999998877543 3677899999999999999999999999887532 234555555544432
Q ss_pred ------------------cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--
Q 003028 548 ------------------CGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPT-- 607 (856)
Q Consensus 548 ------------------~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t-- 607 (856)
.+..++|...++...+.. ..+..++..+...|...|++++|...|++..+.. |+...
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~--~~~~~~~ 371 (472)
T 4g1t_A 295 VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE--LTPVAKQ 371 (472)
T ss_dssp HHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC--CCHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC--CCChHHH
Confidence 123567777777777654 3356778899999999999999999999998754 43322
Q ss_pred --HHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003028 608 --CNSLLS-AFLRVGQLSDAYHLLQGMLNLGLKPSL 640 (856)
Q Consensus 608 --~n~Li~-ay~~~g~~e~A~~l~~~M~~~g~~Pd~ 640 (856)
+..+.. .+.+.|++++|+..|++.++ +.|+.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~ 405 (472)
T 4g1t_A 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKS 405 (472)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccc
Confidence 222322 34578999999999999887 44443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=6.5e-11 Score=123.85 Aligned_cols=246 Identities=10% Similarity=-0.029 Sum_probs=192.0
Q ss_pred hChhHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKH--DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEAL 415 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~p--d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 415 (856)
++++.|+..|+.+.+.....+ +..+|..+...+...|++++|...|+++.+.. +.+...|..+...|...|++++|+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 677889999999876422222 46688999999999999999999999998863 347889999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 003028 416 DVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQG 495 (856)
Q Consensus 416 ~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g 495 (856)
+.|+++.+.. +.+..++..+..+|.+.|++++|...|+++.+. .|+......++..+...|++++|...|+......
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 9999998864 456889999999999999999999999999886 3454555556666677899999999998877653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh
Q 003028 496 CIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFE--P-DKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPV 572 (856)
Q Consensus 496 ~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~--p-d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 572 (856)
+++...|. ++..+...++.++|+..+.+....... | +...+..+...+...|++++|...|+.+.+.. |+.
T Consensus 175 -~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN-- 248 (275)
T ss_dssp -CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--
T ss_pred -CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--
Confidence 23444444 777788889999999999887643211 1 14678888999999999999999999998754 422
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 003028 573 YGLLVDLWGKAGNVRKAWEWY 593 (856)
Q Consensus 573 y~~Li~~~~k~g~~~~A~~l~ 593 (856)
+.....++...|++++|.+.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 333455677888888887766
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-10 Score=118.56 Aligned_cols=162 Identities=13% Similarity=0.123 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 361 HTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIH 440 (856)
Q Consensus 361 ~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~ 440 (856)
..|..+...+...|++++|..+|+++.+.. +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...|
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 344445555555555555555555554421 2234445555555555555555555555544432 22344444444444
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 441 AKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSAL 520 (856)
Q Consensus 441 ~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 520 (856)
...|++++|.++++++.+.. +.+...+..+...|.+.|++++|.++|+++.+... .+...+..+...|...|++++|+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHH
Confidence 44444444444444444432 22333444444444444444444444444433211 12333333344444444444444
Q ss_pred HHHHHH
Q 003028 521 KLYRDM 526 (856)
Q Consensus 521 ~ll~~M 526 (856)
..|+++
T Consensus 180 ~~~~~~ 185 (243)
T 2q7f_A 180 SQFAAV 185 (243)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.3e-10 Score=118.47 Aligned_cols=245 Identities=10% Similarity=0.023 Sum_probs=188.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD--RVTYCTLIDI 439 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd--~~ty~~Ll~~ 439 (856)
.+......+...|++++|..+|++..+.. +.+...|..+..+|...|++++|++.|++..+..-.++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 45567788889999999999999998753 23455788888899999999999999999987431222 2348888999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSA 519 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A 519 (856)
+...|++++|++.|++..+.. +.+..++..+...|...|++++|.+.|++..+.. +.+...|..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998863 3466889999999999999999999999887762 23566777777344555699999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcC-CCCC------HhhHHHHHHHHHhcCCHHHH
Q 003028 520 LKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY---LDEAEAVFAEMRRKN-WVPD------EPVYGLLVDLWGKAGNVRKA 589 (856)
Q Consensus 520 ~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~---~~~A~~l~~~m~~~g-~~pd------~~~y~~Li~~~~k~g~~~~A 589 (856)
++.|+++.+.. +.+...+..+..++...|+ .++|...+++..+.. -.|+ ..+|..+...|.+.|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999988763 2236677777788888888 888999998887642 1233 25788889999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHH
Q 003028 590 WEWYEAMLQAGLRPNVPTCNSL 611 (856)
Q Consensus 590 ~~l~~~m~~~g~~pd~~t~n~L 611 (856)
...|++..+.. +-+...+..+
T Consensus 241 ~~~~~~al~~~-p~~~~a~~~l 261 (272)
T 3u4t_A 241 DAAWKNILALD-PTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHhcC-ccHHHHHHHh
Confidence 99999998753 3344444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-10 Score=117.37 Aligned_cols=212 Identities=16% Similarity=0.136 Sum_probs=127.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
....|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44556666667777777777777777776543 4456667777777777777777777777776653 335667777777
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 003028 474 CLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDE 553 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~ 553 (856)
.|...|++++|.++|+++.+... .+...|..+...|...|++++|+.+++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777766532 256667777777777777777777777766543 2345566667777777777777
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003028 554 AEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSL 611 (856)
Q Consensus 554 A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~L 611 (856)
|...++.+.+.. ..+..++..+...|.+.|++++|...|+++.+.. +.+...+..+
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 233 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHH
Confidence 777777776643 2346667777777777777777777777776542 2334444433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.4e-11 Score=130.84 Aligned_cols=271 Identities=14% Similarity=0.064 Sum_probs=175.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNV----VTYNRLIHSYGRANYLNEALDVFKQMQVV----G-CEPDRVT 432 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~----~ty~~Li~~~~~~g~~~~A~~lf~~m~~~----g-~~pd~~t 432 (856)
.+..+...+...|++++|..+|++..+... .+. ..|..+...|...|++++|++.|++..+. + ......+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344566677788888888888888877531 233 46777778888888888888888877543 1 1223456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHccCC-----------------HHHHHHHHHH
Q 003028 433 YCTLIDIHAKAGFLDVAMDMYKKMQAA----G-LSPDTFTYSVIINCLGKAGH-----------------LQAAHQLFCE 490 (856)
Q Consensus 433 y~~Ll~~~~k~g~~~~A~~l~~~m~~~----g-~~pd~~ty~~Li~~y~k~g~-----------------~~~A~~lf~~ 490 (856)
+..+...|...|++++|...|++..+. + ......++..+...|...|+ +++|.+.|++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 777778888888888888888777553 1 11124466677777888888 7777777776
Q ss_pred HHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHH
Q 003028 491 MVNQ----GCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNAGF-EPD----KVTYSIVMEVLGHCGYLDEAEAVFAE 560 (856)
Q Consensus 491 m~~~----g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi-~pd----~~ty~~ll~a~~~~g~~~~A~~l~~~ 560 (856)
..+. +..+ ...+|..+...|...|++++|+..|++..+... ..+ ...+..+...+...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5432 1111 234666777778888888888888877654211 011 22566666777777777777777776
Q ss_pred HHHcCCC-----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 561 MRRKNWV-----PDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA----GL-RPNVPTCNSLLSAFLRVGQLSDAYHLLQG 630 (856)
Q Consensus 561 m~~~g~~-----pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~----g~-~pd~~t~n~Li~ay~~~g~~e~A~~l~~~ 630 (856)
..+.... ....++..+...|...|++++|..+|++..+. +. .....+|..+...|...|++++|...|++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6543110 11455666777777777777777777766542 10 01134566677777777777777777777
Q ss_pred HHH
Q 003028 631 MLN 633 (856)
Q Consensus 631 M~~ 633 (856)
.++
T Consensus 369 al~ 371 (411)
T 4a1s_A 369 HLQ 371 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-10 Score=126.69 Aligned_cols=275 Identities=16% Similarity=0.094 Sum_probs=192.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-
Q 003028 358 HDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPN----VVTYNRLIHSYGRANYLNEALDVFKQMQVV----GCEP- 428 (856)
Q Consensus 358 pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd----~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~----g~~p- 428 (856)
.....+..+...+...|++++|..+|++..+.. +.+ ...|..+...|...|++++|...|++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 455667777888889999999999999888763 223 356778888889999999999998876542 2112
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCC--------------------HHH
Q 003028 429 DRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGL-SPD----TFTYSVIINCLGKAGH--------------------LQA 483 (856)
Q Consensus 429 d~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~-~pd----~~ty~~Li~~y~k~g~--------------------~~~ 483 (856)
...++..+...|...|++++|...+++..+... ..+ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 245677788888889999999988888765310 012 3467777888888888 888
Q ss_pred HHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHH
Q 003028 484 AHQLFCEMVNQ----GCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNAGF-EPD----KVTYSIVMEVLGHCGYLDE 553 (856)
Q Consensus 484 A~~lf~~m~~~----g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi-~pd----~~ty~~ll~a~~~~g~~~~ 553 (856)
|.+.+++..+. +..+ ...+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 88888765432 1111 234677778888888888888888887754310 112 2366777778888888888
Q ss_pred HHHHHHHHHHcCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHH
Q 003028 554 AEAVFAEMRRKNWV-PD----EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGL-RPN----VPTCNSLLSAFLRVGQLSD 623 (856)
Q Consensus 554 A~~l~~~m~~~g~~-pd----~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~-~pd----~~t~n~Li~ay~~~g~~e~ 623 (856)
|...+++..+.... .+ ..++..+...|...|++++|...|++..+... ..+ ..++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 88888877643110 11 45677777888888888888888887764210 112 4567778888888888888
Q ss_pred HHHHHHHHHH
Q 003028 624 AYHLLQGMLN 633 (856)
Q Consensus 624 A~~l~~~M~~ 633 (856)
|...|++.++
T Consensus 326 A~~~~~~al~ 335 (406)
T 3sf4_A 326 AMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887664
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-09 Score=121.49 Aligned_cols=249 Identities=9% Similarity=0.047 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANY-LNEALDVFKQMQVVGCEPDRVTYCTLID 438 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~-~~~A~~lf~~m~~~g~~pd~~ty~~Ll~ 438 (856)
...|..+..++.+.|++++|...|+...+.. +-+...|+.+...+...|+ +++|+..|++..+.. +-+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3467778888889999999999999998753 3467888999999999996 999999999998865 457788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHH
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK-ARNYQ 517 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~-~g~~~ 517 (856)
++...|++++|+..|+++++.. +-+...|..+..++.+.|++++|...|+++.+.... +...|+.+..+|.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998874 347888888888999999999999999988876443 67888888888888 56546
Q ss_pred HH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC------
Q 003028 518 SA-----LKLYRDMQNAGFEPDKVTYSIVMEVLGHCG--YLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAG------ 584 (856)
Q Consensus 518 ~A-----~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g--~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g------ 584 (856)
+| ++.|++..... +-+...|..+...+...| ++++|.+.+.++ + ....+...+..+.++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 47777776643 223557777777777776 577787777776 3 22345667777777777763
Q ss_pred ---CHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHH
Q 003028 585 ---NVRKAWEWYEAM-LQAGLRPNVPTCNSLLSAFL 616 (856)
Q Consensus 585 ---~~~~A~~l~~~m-~~~g~~pd~~t~n~Li~ay~ 616 (856)
.+++|.++|+++ .+.. +-....|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 247777787777 4421 223445555555444
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-10 Score=122.13 Aligned_cols=271 Identities=16% Similarity=0.098 Sum_probs=185.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPN----VVTYNRLIHSYGRANYLNEALDVFKQMQVV----GCE-PDRVT 432 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd----~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~----g~~-pd~~t 432 (856)
.+......+...|++++|..+|+++.+.. +.+ ...|..+...|...|++++|.+.|++.... +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34455667778888888888888887753 123 356777888888888888888888876432 211 12456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCC--------------------HHHHHHH
Q 003028 433 YCTLIDIHAKAGFLDVAMDMYKKMQAAGL-SPD----TFTYSVIINCLGKAGH--------------------LQAAHQL 487 (856)
Q Consensus 433 y~~Ll~~~~k~g~~~~A~~l~~~m~~~g~-~pd----~~ty~~Li~~y~k~g~--------------------~~~A~~l 487 (856)
+..+...|...|++++|...+++..+... ..+ ..++..+...|...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77778888888888888888887755310 112 3467777788888888 8888888
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHH
Q 003028 488 FCEMVNQ----GCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNAGF-EPD----KVTYSIVMEVLGHCGYLDEAEAV 557 (856)
Q Consensus 488 f~~m~~~----g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi-~pd----~~ty~~ll~a~~~~g~~~~A~~l 557 (856)
+++.... +..+ ....+..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8765432 1111 234677777888888888888888887654210 011 23666777778888888888888
Q ss_pred HHHHHHcCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 558 FAEMRRKNWV-PD----EPVYGLLVDLWGKAGNVRKAWEWYEAMLQA----GL-RPNVPTCNSLLSAFLRVGQLSDAYHL 627 (856)
Q Consensus 558 ~~~m~~~g~~-pd----~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~----g~-~pd~~t~n~Li~ay~~~g~~e~A~~l 627 (856)
+++..+.... .+ ..++..+...|...|++++|...+++..+. +. .....++..+...|...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8877643111 11 456777778888888888888888877642 10 01134677788888888888888888
Q ss_pred HHHHHH
Q 003028 628 LQGMLN 633 (856)
Q Consensus 628 ~~~M~~ 633 (856)
|++.++
T Consensus 326 ~~~a~~ 331 (338)
T 3ro2_A 326 AEKHLE 331 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888876
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-09 Score=121.12 Aligned_cols=240 Identities=10% Similarity=0.082 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 395 VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF-LDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 395 ~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~-~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
...|+.+...+.+.|++++|++.|++..+.. +-+...|+.+..++...|+ +++|+..|++.++.. +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567778888899999999999999998875 5568889999999999997 999999999999874 347889999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChH
Q 003028 474 CLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGH-CGYLD 552 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~-~g~~~ 552 (856)
+|.+.|++++|...|+++.+.... +...|..+..++.+.|++++|+..|+++.+... -+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999987443 788999999999999999999999999998653 357788888888988 56658
Q ss_pred HH-----HHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC------
Q 003028 553 EA-----EAVFAEMRRKNWVPDEPVYGLLVDLWGKAG--NVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVG------ 619 (856)
Q Consensus 553 ~A-----~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g--~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g------ 619 (856)
+| ...++...+.. .-+...|+.+...|.+.| ++++|.+.+.++ +. .+.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 87 47888887754 236778888888898888 689999999988 32 3556788999999999874
Q ss_pred ---CHHHHHHHHHHH-HHCCCCCCHHHH
Q 003028 620 ---QLSDAYHLLQGM-LNLGLKPSLQTY 643 (856)
Q Consensus 620 ---~~e~A~~l~~~M-~~~g~~Pd~~ty 643 (856)
.+++|+++|+++ .+ +.|...-|
T Consensus 330 ~~~~~~~A~~~~~~l~~~--~DP~r~~~ 355 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE--KDTIRKEY 355 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCGGGHHH
T ss_pred hHHHHHHHHHHHHHHHHH--hCchhHHH
Confidence 358999999998 65 56665443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-10 Score=126.98 Aligned_cols=274 Identities=14% Similarity=0.030 Sum_probs=209.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----C-CCCCHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDR----VTYCTLIDIHAKAGFLDVAMDMYKKMQAA----G-LSPDTFT 467 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~----~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~----g-~~pd~~t 467 (856)
.+..+...+...|++++|+.+|+++.+.. +.+. ..|..+...|...|++++|...|++..+. + ......+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34456678899999999999999998864 2233 47888999999999999999999988653 1 1223567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHH
Q 003028 468 YSVIINCLGKAGHLQAAHQLFCEMVNQ----GC-IPNLVTYNIMIALQAKARN-----------------YQSALKLYRD 525 (856)
Q Consensus 468 y~~Li~~y~k~g~~~~A~~lf~~m~~~----g~-~pd~~ty~~Li~~~~~~g~-----------------~~~A~~ll~~ 525 (856)
+..+...|...|++++|...|++..+. +. .....+|..+...|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 788889999999999999999987653 11 1134578888899999999 9999999987
Q ss_pred HHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003028 526 MQNA----GFEP-DKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWV-PD----EPVYGLLVDLWGKAGNVRKAWEWYEA 595 (856)
Q Consensus 526 M~~~----gi~p-d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~-pd----~~~y~~Li~~~~k~g~~~~A~~l~~~ 595 (856)
..+. +..+ ...++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++|...|++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6542 2112 2347778888899999999999999988763211 12 23788899999999999999999998
Q ss_pred HHHcCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcchHHHHHHH
Q 003028 596 MLQAGL-RP----NVPTCNSLLSAFLRVGQLSDAYHLLQGMLNL----GLKP-SLQTYTLLLSCCTEARSPYDMGFCHEL 665 (856)
Q Consensus 596 m~~~g~-~p----d~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~----g~~P-d~~ty~~Ll~a~~~~g~~~~a~~l~~~ 665 (856)
..+... .. ...++..+...|...|++++|...|++.++. +..+ ...++..+...+...|++++|...++.
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 875310 01 2567889999999999999999999998762 1111 134677778889999999999998888
Q ss_pred HHHcCC
Q 003028 666 MAVSGH 671 (856)
Q Consensus 666 m~~~g~ 671 (856)
..+...
T Consensus 369 al~~~~ 374 (411)
T 4a1s_A 369 HLQLAX 374 (411)
T ss_dssp HHHHCC
T ss_pred HHHHHh
Confidence 776654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-08 Score=109.63 Aligned_cols=217 Identities=12% Similarity=0.119 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003028 412 NEALDVFKQMQVVGCEPDRVTYCTLIDIHA-------KAGFL-------DVAMDMYKKMQAAGLSPDTFTYSVIINCLGK 477 (856)
Q Consensus 412 ~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~-------k~g~~-------~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k 477 (856)
++|..+|++..... +-+...|..+...+. +.|++ ++|..+|++.++.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666666665542 345556666555554 34664 7888888887763123355677788888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChHHH
Q 003028 478 AGHLQAAHQLFCEMVNQGCIPN-LV-TYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLG-HCGYLDEA 554 (856)
Q Consensus 478 ~g~~~~A~~lf~~m~~~g~~pd-~~-ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~-~~g~~~~A 554 (856)
.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+... .+...|........ ..|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888764 333 33 788888888888888888888888876532 23334433332222 36889999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 555 EAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAG-LRP--NVPTCNSLLSAFLRVGQLSDAYHLLQGM 631 (856)
Q Consensus 555 ~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g-~~p--d~~t~n~Li~ay~~~g~~e~A~~l~~~M 631 (856)
..+|+...+.. .-+...+..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998887753 2367788888888899999999999999988752 344 4678888888888999999999999988
Q ss_pred HH
Q 003028 632 LN 633 (856)
Q Consensus 632 ~~ 633 (856)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 87
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-09 Score=121.48 Aligned_cols=275 Identities=12% Similarity=0.054 Sum_probs=208.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC
Q 003028 392 QPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD----RVTYCTLIDIHAKAGFLDVAMDMYKKMQAA----GLSP 463 (856)
Q Consensus 392 ~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd----~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~----g~~p 463 (856)
......+..+...+...|++++|..+|++..+.. +.+ ...|..+...|...|++++|...+++.... +..+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3456677778889999999999999999998864 223 357888899999999999999999987543 2111
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------HH
Q 003028 464 -DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGC-IPN----LVTYNIMIALQAKARN--------------------YQ 517 (856)
Q Consensus 464 -d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~-~pd----~~ty~~Li~~~~~~g~--------------------~~ 517 (856)
...++..+...|...|++++|...|++..+... ..+ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 255777888999999999999999998765310 012 4478888899999999 99
Q ss_pred HHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHhcCCHH
Q 003028 518 SALKLYRDMQNA----GFEPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNW-VPD----EPVYGLLVDLWGKAGNVR 587 (856)
Q Consensus 518 ~A~~ll~~M~~~----gi~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~-~pd----~~~y~~Li~~~~k~g~~~ 587 (856)
+|++.+.+.... +..+. ..++..+...+...|++++|...+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999876542 21122 34677888889999999999999998875311 112 337888899999999999
Q ss_pred HHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCcc
Q 003028 588 KAWEWYEAMLQAGL-RPN----VPTCNSLLSAFLRVGQLSDAYHLLQGMLNL----GLKPS-LQTYTLLLSCCTEARSPY 657 (856)
Q Consensus 588 ~A~~l~~~m~~~g~-~pd----~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~----g~~Pd-~~ty~~Ll~a~~~~g~~~ 657 (856)
+|...+++..+... ..+ ..++..+...|...|++++|...|++..+. +-.+. ..++..+...+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 99999998874210 112 567889999999999999999999998752 11111 456777777888999998
Q ss_pred hHHHHHHHHH
Q 003028 658 DMGFCHELMA 667 (856)
Q Consensus 658 ~a~~l~~~m~ 667 (856)
+|...++...
T Consensus 325 ~A~~~~~~al 334 (406)
T 3sf4_A 325 QAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887765544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-10 Score=122.87 Aligned_cols=245 Identities=13% Similarity=0.099 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRD-------GCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVV------G- 425 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~-------g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~------g- 425 (856)
..++..+...+...|++++|..+|+++.+. ..+.....+..+...|...|++++|.++|++.... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777777888888888888888777652 11223456677777777777777777777776543 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----
Q 003028 426 CEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA------GL-SPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ---- 494 (856)
Q Consensus 426 ~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~------g~-~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~---- 494 (856)
......++..+...|...|++++|...|+++.+. +. +....++..+...|...|++++|.++|++..+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1223455666666677777777777777666543 11 112344555556666666666666666665542
Q ss_pred --CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003028 495 --GCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNAG-------FEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRK 564 (856)
Q Consensus 495 --g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g-------i~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~ 564 (856)
+..| ...++..+...|...|++++|++.|+++.+.. ..+........
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~----------------------- 243 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH----------------------- 243 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH-----------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH-----------------------
Confidence 1111 22345555556666666666666666554420 00100000000
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 565 NWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 565 g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
...+..+...+...+.+.+|...++..... .+.+..+|..+...|.+.|++++|.++|++.++
T Consensus 244 -----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 244 -----AEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----HHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111112222223334444444455544432 122445677777777777777777777777664
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.8e-10 Score=118.71 Aligned_cols=272 Identities=13% Similarity=0.043 Sum_probs=205.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD----RVTYCTLIDIHAKAGFLDVAMDMYKKMQAA----GLS-PDTFT 467 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd----~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~----g~~-pd~~t 467 (856)
.+......+...|++++|..+|+++.+.. +.+ ...|..+...|...|++++|.+.+++..+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 44556678889999999999999998864 223 367888999999999999999999987643 111 22567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHH
Q 003028 468 YSVIINCLGKAGHLQAAHQLFCEMVNQGC-IPN----LVTYNIMIALQAKARN--------------------YQSALKL 522 (856)
Q Consensus 468 y~~Li~~y~k~g~~~~A~~lf~~m~~~g~-~pd----~~ty~~Li~~~~~~g~--------------------~~~A~~l 522 (856)
+..+...|...|++++|...|++..+... ..+ ..++..+...|...|+ +++|++.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 78888999999999999999998764310 112 3478888899999999 9999999
Q ss_pred HHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC----CHhhHHHHHHHHHhcCCHHHHHHH
Q 003028 523 YRDMQNA----GFEPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNW-VP----DEPVYGLLVDLWGKAGNVRKAWEW 592 (856)
Q Consensus 523 l~~M~~~----gi~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~-~p----d~~~y~~Li~~~~k~g~~~~A~~l 592 (856)
+++.... +..+. ...+..+...+...|++++|...+++..+... .. ...++..+...|...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9876532 21121 34677788889999999999999998875311 11 133788888999999999999999
Q ss_pred HHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcchHHHH
Q 003028 593 YEAMLQAGL-RPN----VPTCNSLLSAFLRVGQLSDAYHLLQGMLNL----GLKP-SLQTYTLLLSCCTEARSPYDMGFC 662 (856)
Q Consensus 593 ~~~m~~~g~-~pd----~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~----g~~P-d~~ty~~Ll~a~~~~g~~~~a~~l 662 (856)
+++..+... ..+ ..++..+...|...|++++|...+++.++. +-.+ ...++..+...+...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 998774210 112 567888999999999999999999988752 1111 134677778889999999999888
Q ss_pred HHHHHHc
Q 003028 663 HELMAVS 669 (856)
Q Consensus 663 ~~~m~~~ 669 (856)
++...+.
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 8777654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.5e-09 Score=117.49 Aligned_cols=291 Identities=10% Similarity=0.010 Sum_probs=192.2
Q ss_pred hChhHHHHHHHHHHHhC-CCCCC--HHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHcCCCCCHHH----
Q 003028 338 QDHTVALGFFNWLRRQA-GFKHD--EHTYTTMVGI--LGRARQFGAIN-----------KLLDQMVRDGCQPNVVT---- 397 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~-g~~pd--~~~y~~Li~~--~~k~g~~~~A~-----------~lf~~m~~~g~~pd~~t---- 397 (856)
++.+.|..+++.+.... ....| ...|-.++.. ..-.+.++.+. ++++.+... +.+...
T Consensus 26 ~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~~l~~ 103 (383)
T 3ulq_A 26 FSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTGLLEY 103 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchhHHHH
Confidence 57778888888876532 22233 3333333322 11223344444 666666542 111111
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CC----CC
Q 003028 398 --YNRLIHSYGRANYLNEALDVFKQMQVV----GCEP-DRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAG--LS----PD 464 (856)
Q Consensus 398 --y~~Li~~~~~~g~~~~A~~lf~~m~~~----g~~p-d~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g--~~----pd 464 (856)
|......+...|++++|++.|++.... +-.+ ...+|..+...|...|++++|...+++..+.- .. ..
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 122456677889999999999988753 1111 34678888889999999999999998876531 11 12
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCC
Q 003028 465 TFTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQNA----GF-EPD 534 (856)
Q Consensus 465 ~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~----gi-~pd 534 (856)
..+++.+...|...|++++|...|++..+. +..+ ...+|..+...|...|++++|++.|++..+. +. +..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 356777888899999999999998877643 1111 1246778888899999999999999887652 33 223
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC-CHH
Q 003028 535 KVTYSIVMEVLGHCGYLDEAEAVFAEMRRK----NWVPDEPVYGLLVDLWGKAGN---VRKAWEWYEAMLQAGLRP-NVP 606 (856)
Q Consensus 535 ~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~----g~~pd~~~y~~Li~~~~k~g~---~~~A~~l~~~m~~~g~~p-d~~ 606 (856)
..++..+...+...|++++|...+++..+. +.......+..+...|...|+ +++|..++++.. ..+ ...
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~ 340 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLED 340 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHH
Confidence 557778888888999999999988887653 111122335667777888888 667777766652 222 234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 607 TCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 607 t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.+..+...|...|++++|...|++..+
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 677788888899999999998888765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.6e-10 Score=120.15 Aligned_cols=235 Identities=13% Similarity=0.082 Sum_probs=154.8
Q ss_pred HhhhChhHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHH
Q 003028 335 KQLQDHTVALGFFNWLRRQA------GFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRD------GC-QPNVVTYNRL 401 (856)
Q Consensus 335 ~~l~~~~~Al~~f~~m~~~~------g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~------g~-~pd~~ty~~L 401 (856)
...++++.|+.+|+.+.+.. ........+..+..+|...|++++|..+|++..+. +- +.....|..+
T Consensus 38 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 117 (311)
T 3nf1_A 38 ASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNL 117 (311)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 34589999999999987521 12234567888999999999999999999998764 11 2245678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHH
Q 003028 402 IHSYGRANYLNEALDVFKQMQVV------GC-EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA------GLSP-DTFT 467 (856)
Q Consensus 402 i~~~~~~g~~~~A~~lf~~m~~~------g~-~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~------g~~p-d~~t 467 (856)
...|...|++++|.++|+++.+. +. ......+..+...|...|++++|.++|+++.+. +..| ...+
T Consensus 118 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 197 (311)
T 3nf1_A 118 AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT 197 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999998764 22 234567888899999999999999999999774 2122 3457
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003028 468 YSVIINCLGKAGHLQAAHQLFCEMVNQG-------CIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSI 540 (856)
Q Consensus 468 y~~Li~~y~k~g~~~~A~~lf~~m~~~g-------~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ 540 (856)
+..+...|...|++++|.+.|+++.+.. ..+....... ....+..
T Consensus 198 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~ 249 (311)
T 3nf1_A 198 KNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM----------------------------HAEEREE 249 (311)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH----------------------------HHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH----------------------------HHHHHHH
Confidence 8888999999999999999999988631 0000000000 0111222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003028 541 VMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQ 598 (856)
Q Consensus 541 ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~ 598 (856)
+...+...+.+.++...+....... .....++..+..+|.+.|++++|..+|++..+
T Consensus 250 ~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 250 CKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2333334455555555555554322 22445666777777777777777777776654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-08 Score=99.86 Aligned_cols=171 Identities=15% Similarity=0.048 Sum_probs=120.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 464 DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVME 543 (856)
Q Consensus 464 d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~ 543 (856)
+..+|..|-..|.+.|++++|.+.|++..+.... +...|..+...|.+.|++++|+..+........ -+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 4566677777777777777777777776655322 566677777777777777777777777665432 23445556666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 544 VLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSD 623 (856)
Q Consensus 544 a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~ 623 (856)
.+...++++.+...+....+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+...|..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 6777777777777777776643 3356677777788888888888888888877653 4467778888888888888888
Q ss_pred HHHHHHHHHHCCCCCCH
Q 003028 624 AYHLLQGMLNLGLKPSL 640 (856)
Q Consensus 624 A~~l~~~M~~~g~~Pd~ 640 (856)
|++.|++.++ +.|+.
T Consensus 160 A~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHHHHH--TTHHH
T ss_pred HHHHHHHHHh--CCccC
Confidence 8888888876 34544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.10 E-value=5.6e-08 Score=104.54 Aligned_cols=218 Identities=9% Similarity=0.098 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 377 GAINKLLDQMVRDGCQPNVVTYNRLIHSYGR-------ANYL-------NEALDVFKQMQVVGCEPDRVTYCTLIDIHAK 442 (856)
Q Consensus 377 ~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~-------~g~~-------~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k 442 (856)
++|..+|++.... .+.+...|..+...+.. .|++ ++|..+|++..+.-.+-+...|..+...+.+
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5777788877764 24467778777777653 4765 8888888888762113355678888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHH
Q 003028 443 AGFLDVAMDMYKKMQAAGLSPD-TF-TYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQA-KARNYQSA 519 (856)
Q Consensus 443 ~g~~~~A~~l~~~m~~~g~~pd-~~-ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~-~~g~~~~A 519 (856)
.|++++|.++|++.++. .|+ .. +|..+...+.+.|++++|.++|++..+... .+...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888874 343 33 788888888888888999888888887532 24445544433322 26889999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 520 LKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN-WVP--DEPVYGLLVDLWGKAGNVRKAWEWYEAM 596 (856)
Q Consensus 520 ~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g-~~p--d~~~y~~Li~~~~k~g~~~~A~~l~~~m 596 (856)
..+|++..+.. +-+...|..++..+...|+.++|..+|+...... +.| ....|..++..+.+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998887652 2356677888888888899999999999888853 343 4567888888888889999999998888
Q ss_pred HHc
Q 003028 597 LQA 599 (856)
Q Consensus 597 ~~~ 599 (856)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-08 Score=98.17 Aligned_cols=167 Identities=13% Similarity=0.123 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLID 438 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~ 438 (856)
+...|..+...|.+.|++++|.+.|++..+.. +-+...|..+..+|.+.|++++|+..+.+..... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45677777888888888888888888777653 2366677777777888888888888877776654 445566666677
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQS 518 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~ 518 (856)
.+...++++.|.+.+.+..... +.+...+..+..+|.+.|++++|.+.|++..+... .+..+|..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 7777777777777777776652 34566777777777777777777777777766532 256677777777777777777
Q ss_pred HHHHHHHHHHc
Q 003028 519 ALKLYRDMQNA 529 (856)
Q Consensus 519 A~~ll~~M~~~ 529 (856)
|++.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777776653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.7e-09 Score=119.78 Aligned_cols=340 Identities=14% Similarity=0.034 Sum_probs=204.3
Q ss_pred HHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003028 333 VLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQF---GAINKLLDQMVRDGCQPNVVTYNRLIHSYGRAN 409 (856)
Q Consensus 333 vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~---~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g 409 (856)
+....++++.|++.|....+. | +...+..|..+|...|+. ++|...|+...+. +...+..|...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 334457888999999888754 3 233566677777777877 8899998888753 5555666666455554
Q ss_pred -----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 003028 410 -----YLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLD---VAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHL 481 (856)
Q Consensus 410 -----~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~---~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~ 481 (856)
++++|+++|++..+.|. + ..+..|...|...+..+ ++.+.+......| +...+..|...|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 78899999999888663 2 36777777777766544 3445555555444 345666777777777744
Q ss_pred ----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CC
Q 003028 482 ----QAAHQLFCEMVNQGCIPNLVTYNIMIALQAKAR---NYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHC----GY 550 (856)
Q Consensus 482 ----~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g---~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~----g~ 550 (856)
+++..+++.... .+...+..|...|...| +.++|++.|++..+.|. ++...+..+...|... ++
T Consensus 158 ~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 158 DQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp GGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCC
T ss_pred ccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCC
Confidence 444444444333 24447888888888888 88899999998888773 4444445566666544 68
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-----CHH
Q 003028 551 LDEAEAVFAEMRRKNWVPDEPVYGLLVDL-W--GKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVG-----QLS 622 (856)
Q Consensus 551 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~-~--~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g-----~~e 622 (856)
.++|...|+... .+ +...+..|... | ...+++++|..+|++..+.| +...+..|...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 899999998877 33 45566666666 4 46789999999999988865 7778888888887 55 899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHH
Q 003028 623 DAYHLLQGMLNLGLKPSLQTYTLLLSCCTE----ARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFL 698 (856)
Q Consensus 623 ~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~----~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~ 698 (856)
+|+..|++.. .| +...+..|-..|.. ..+.++|...+++..+
T Consensus 305 ~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~------------------------------ 350 (452)
T 3e4b_A 305 AAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR------------------------------ 350 (452)
T ss_dssp HHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT------------------------------
T ss_pred HHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh------------------------------
Confidence 9999988876 33 44444444444433 1133333333333322
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCCC
Q 003028 699 EMMHSEDRESKRGLVDAVVDFLHK----SGLKEEAGSVWEVAAQKNV 741 (856)
Q Consensus 699 ~~~~~~~~~~~~~~~~aLi~~y~k----~G~~eeA~~lf~~m~~~~~ 741 (856)
.+. ......|..+|.. ..+.++|...|+...+.|.
T Consensus 351 -----~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 351 -----NGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp -----TTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred -----hCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 221 1234456666653 3467888888888877764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.07 E-value=6.3e-08 Score=106.59 Aligned_cols=271 Identities=13% Similarity=0.038 Sum_probs=178.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVV----TYNRLIHSYGRANYLNEALDVFKQMQVVGC-EPD----RVTY 433 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~----ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd----~~ty 433 (856)
+..+...+...|++++|...+++.....-..+.. .++.+...|...|++++|.+.+++.....- ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344556667888888888888877643222222 456666778888889988888887754210 111 2335
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC----CCHHH
Q 003028 434 CTLIDIHAKAGFLDVAMDMYKKMQAA----GLS--P-DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCI----PNLVT 502 (856)
Q Consensus 434 ~~Ll~~~~k~g~~~~A~~l~~~m~~~----g~~--p-d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~----pd~~t 502 (856)
..+...+...|++++|...+++..+. +.. | ...++..+...|...|++++|...+++....... ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66777788889999998888887653 221 2 2345666777888889999999888887654211 12356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHhhH
Q 003028 503 YNIMIALQAKARNYQSALKLYRDMQNAGFEPD--KVTYS----IVMEVLGHCGYLDEAEAVFAEMRRKNWVP---DEPVY 573 (856)
Q Consensus 503 y~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd--~~ty~----~ll~a~~~~g~~~~A~~l~~~m~~~g~~p---d~~~y 573 (856)
|..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+.........+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77788888889999999998888765321111 11111 22344668889999988888776532211 12245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 574 GLLVDLWGKAGNVRKAWEWYEAMLQA----GLRPNV-PTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 574 ~~Li~~~~k~g~~~~A~~l~~~m~~~----g~~pd~-~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
..+...+...|++++|...++..... +..++. ..+..+..+|...|+.++|...|++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66777888889998888888877542 211222 2566677788888888888888887764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-08 Score=116.58 Aligned_cols=304 Identities=14% Similarity=0.106 Sum_probs=203.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH---
Q 003028 341 TVALGFFNWLRRQAGFKHDEHTYTTMVGILGRAR-----QFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLN--- 412 (856)
Q Consensus 341 ~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g-----~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~--- 412 (856)
++|+..|...... +...+..|..++...+ ++++|...|+...+.|. ...+..|...|...+..+
T Consensus 55 ~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~ 126 (452)
T 3e4b_A 55 KQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNV 126 (452)
T ss_dssp ---------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTC
T ss_pred HHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCH
Confidence 7888888877642 4556777777565555 78899999999998763 236777777787776544
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHH
Q 003028 413 EALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAG---HLQAAHQLFC 489 (856)
Q Consensus 413 ~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g---~~~~A~~lf~ 489 (856)
++.+.+.+....| +...+..|...|...+.++++......+.+.-...+...+..|..+|.+.| +.++|.+.|+
T Consensus 127 ~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~ 203 (452)
T 3e4b_A 127 NAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQME 203 (452)
T ss_dssp CHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 4555555555544 456777788888888865555554333333222223448888999999999 9999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHH
Q 003028 490 EMVNQGCIPNLVTYNIMIALQAKA----RNYQSALKLYRDMQNAGFEPDKVTYSIVMEV-L--GHCGYLDEAEAVFAEMR 562 (856)
Q Consensus 490 ~m~~~g~~pd~~ty~~Li~~~~~~----g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a-~--~~~g~~~~A~~l~~~m~ 562 (856)
...+.|.. +...+..|...|... +++++|+..|++.. .| +...+..+-.. + ...++.++|...|+...
T Consensus 204 ~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 204 AGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 99988744 566556677777655 79999999999987 33 34455556555 3 46899999999999999
Q ss_pred HcCCCCCHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 003028 563 RKNWVPDEPVYGLLVDLWGKAG-----NVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR----VGQLSDAYHLLQGMLN 633 (856)
Q Consensus 563 ~~g~~pd~~~y~~Li~~~~k~g-----~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~----~g~~e~A~~l~~~M~~ 633 (856)
+.| +...+..|-.+|. .| ++++|..+|++.. . -+...+..|...|.. ..++++|+..|++..+
T Consensus 279 ~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 279 AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 877 6778888888887 55 9999999999887 3 477888888888876 3489999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHcCC
Q 003028 634 LGLKPSLQTYTLLLSCCTE----ARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 634 ~g~~Pd~~ty~~Ll~a~~~----~g~~~~a~~l~~~m~~~g~ 671 (856)
.|. |+ ....|-..|.. ..+..+|...++...+.|.
T Consensus 351 ~g~-~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 351 NGQ-NS--ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TTC-TT--HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred hCh-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 763 33 23333333332 2345555555555555443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.5e-09 Score=114.80 Aligned_cols=295 Identities=11% Similarity=0.012 Sum_probs=206.1
Q ss_pred HhcCCHHHHHHHHHHHHHc--CCC--CCHHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHcCCCCC----
Q 003028 371 GRARQFGAINKLLDQMVRD--GCQ--PNVVTYNRLIHS--YGRANYLNEAL-----------DVFKQMQVVGCEPD---- 429 (856)
Q Consensus 371 ~k~g~~~~A~~lf~~m~~~--g~~--pd~~ty~~Li~~--~~~~g~~~~A~-----------~lf~~m~~~g~~pd---- 429 (856)
.+.+++++|..+++++.+. ... ++...|-.++.. ..-.+.++.+. +.++.+.......+
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 4689999999999998653 222 233444444432 22233444444 66666654211111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CC-----
Q 003028 430 RVTYCTLIDIHAKAGFLDVAMDMYKKMQAA----GLSP-DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGC-IP----- 498 (856)
Q Consensus 430 ~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~----g~~p-d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~-~p----- 498 (856)
...+......+...|++++|...|++..+. +-.+ ...++..+...|...|++++|...+++..+.-. .+
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 011223556678899999999999999764 1111 246788889999999999999999998764310 11
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CC
Q 003028 499 NLVTYNIMIALQAKARNYQSALKLYRDMQNAGF-EPD----KVTYSIVMEVLGHCGYLDEAEAVFAEMRRK----NW-VP 568 (856)
Q Consensus 499 d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi-~pd----~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~----g~-~p 568 (856)
...+++.+...|...|++++|++.|++..+... .++ ..++..+...|...|++++|...+++..+. +. ..
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 245788889999999999999999998764311 112 247788889999999999999999998862 22 33
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCH-
Q 003028 569 DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA----GLRPNVPTCNSLLSAFLRVGQ---LSDAYHLLQGMLNLGLKPSL- 640 (856)
Q Consensus 569 d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~----g~~pd~~t~n~Li~ay~~~g~---~e~A~~l~~~M~~~g~~Pd~- 640 (856)
...++..+...|.+.|++++|...+++..+. +-+.....+..+...|...|+ +++|+.++++. +..|+.
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~ 339 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLE 339 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHH
Confidence 4677889999999999999999999987742 111123346778888888998 77888887765 334443
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003028 641 QTYTLLLSCCTEARSPYDMGFCHELMAV 668 (856)
Q Consensus 641 ~ty~~Ll~a~~~~g~~~~a~~l~~~m~~ 668 (856)
..+..+-..+...|++++|...++...+
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4566677789999999999888776654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.5e-09 Score=118.86 Aligned_cols=223 Identities=9% Similarity=-0.017 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003028 376 FGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYL-NEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYK 454 (856)
Q Consensus 376 ~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~-~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~ 454 (856)
++++...+++.... .+.+...|..+...|...|++ ++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555554432 123556666666666666666 77777666666543 3345566666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 455 KMQAAGLSPDTFTYSVIINCLGKA---------GHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRD 525 (856)
Q Consensus 455 ~m~~~g~~pd~~ty~~Li~~y~k~---------g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 525 (856)
+.++. .|+...+..+...|... |++++|.+.|++..+... -+...|..+..+|...
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~------------ 226 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSL------------ 226 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH------------
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHH------------
Confidence 66654 34555556666666665 555555555555554321 1344454444444444
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003028 526 MQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNW--VPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRP 603 (856)
Q Consensus 526 M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~--~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~p 603 (856)
....| ...|++++|...|+...+... .-+...|..+..+|...|++++|...|++..+.. +.
T Consensus 227 ~~~~~---------------~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~ 290 (474)
T 4abn_A 227 YFNTG---------------QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PA 290 (474)
T ss_dssp HHHTT---------------CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhc---------------cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 00000 000445555555555554321 0255566666666666777777777776666542 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 604 NVPTCNSLLSAFLRVGQLSDAYHLLQGM 631 (856)
Q Consensus 604 d~~t~n~Li~ay~~~g~~e~A~~l~~~M 631 (856)
+...|..+...+...|++++|++.+.++
T Consensus 291 ~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 291 WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4556677777777777777777666554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.7e-09 Score=119.25 Aligned_cols=213 Identities=10% Similarity=0.003 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003028 446 LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHL-QAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYR 524 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~-~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~ 524 (856)
++++++.+++.... .+.+...+..+...|...|++ ++|.+.|++..+... -+...|..+...|...|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34445555544433 223555666666666666666 666666666655422 245667777777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc--------CCHH
Q 003028 525 DMQNAGFEPDKVTYSIVMEVLGHC---------GYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKA--------GNVR 587 (856)
Q Consensus 525 ~M~~~gi~pd~~ty~~ll~a~~~~---------g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~--------g~~~ 587 (856)
+..+. .|+...+..+...+... |++++|...|++..+.. .-+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 77654 35556666677777777 88888888888877754 33577788888888888 9999
Q ss_pred HHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcchHHHHH
Q 003028 588 KAWEWYEAMLQAGLR---PNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS-LQTYTLLLSCCTEARSPYDMGFCH 663 (856)
Q Consensus 588 ~A~~l~~~m~~~g~~---pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd-~~ty~~Ll~a~~~~g~~~~a~~l~ 663 (856)
+|...|++..+.. + -+...|..+...|...|++++|++.|++.++. .|+ ...+..+...+...|+.++|...+
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999753 2 38899999999999999999999999999984 444 456777777888888888887765
Q ss_pred HHH
Q 003028 664 ELM 666 (856)
Q Consensus 664 ~~m 666 (856)
..+
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.99 E-value=4.1e-08 Score=95.20 Aligned_cols=163 Identities=12% Similarity=0.037 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
.|..+...+...|++++|...|+++.+.. +.+...|..+...|...|++++|.+.|+++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 45556666666777777777776665432 2355666666666667777777777776666543 345556666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003028 442 KAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALK 521 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ 521 (856)
..|++++|.+.++++.+.. +.+...+..+...|...|++++|.++|++..+.. +.+...|..+...|...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666666542 3355556666666666666666666666665542 1245556666666666666666666
Q ss_pred HHHHHHH
Q 003028 522 LYRDMQN 528 (856)
Q Consensus 522 ll~~M~~ 528 (856)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-07 Score=102.12 Aligned_cols=270 Identities=14% Similarity=0.019 Sum_probs=191.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHH
Q 003028 399 NRLIHSYGRANYLNEALDVFKQMQVVGCEPDRV----TYCTLIDIHAKAGFLDVAMDMYKKMQAAGL-SPD----TFTYS 469 (856)
Q Consensus 399 ~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~----ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~-~pd----~~ty~ 469 (856)
..+...+...|++++|...+++.....-..+.. +++.+...+...|++++|...+++...... ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334456678999999999999987754222222 566777888899999999999998865311 112 23356
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C--CHHHH
Q 003028 470 VIINCLGKAGHLQAAHQLFCEMVNQ----GCI--P-NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFE--P--DKVTY 538 (856)
Q Consensus 470 ~Li~~y~k~g~~~~A~~lf~~m~~~----g~~--p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~--p--d~~ty 538 (856)
.+...|...|++++|...+++.... +.. | ....+..+...|...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6778899999999999999987643 221 2 2346677888999999999999999988764322 1 23467
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhhHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHH
Q 003028 539 SIVMEVLGHCGYLDEAEAVFAEMRRKNWVPD--EPVYG----LLVDLWGKAGNVRKAWEWYEAMLQAGLRP---NVPTCN 609 (856)
Q Consensus 539 ~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd--~~~y~----~Li~~~~k~g~~~~A~~l~~~m~~~g~~p---d~~t~n 609 (856)
..+...+...|++++|...+++.......++ ..... ..+..+...|++++|..++++.......+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7788889999999999999999875421211 11111 23345779999999999999886532111 133567
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003028 610 SLLSAFLRVGQLSDAYHLLQGMLN----LGLKPSL-QTYTLLLSCCTEARSPYDMGFCHELMAV 668 (856)
Q Consensus 610 ~Li~ay~~~g~~e~A~~l~~~M~~----~g~~Pd~-~ty~~Ll~a~~~~g~~~~a~~l~~~m~~ 668 (856)
.+...+...|++++|...+++... .|..++. ..+..+-.++...|+.++|...++....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888999999999999999998865 2222233 2555556678888998888877665543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.94 E-value=7.7e-08 Score=93.19 Aligned_cols=163 Identities=12% Similarity=0.046 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG 476 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~ 476 (856)
.|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 45555566666666666666666665432 3345556666666666666666666666665542 234555555555666
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003028 477 KAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEA 556 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~ 556 (856)
..|++++|.++|+.+.+.. +.+...+..+...|...|++++|++.++++.... +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666555432 1244455555555555555555555555554432 1233444445555555555555555
Q ss_pred HHHHHHH
Q 003028 557 VFAEMRR 563 (856)
Q Consensus 557 l~~~m~~ 563 (856)
.++.+.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.4e-07 Score=102.52 Aligned_cols=233 Identities=8% Similarity=-0.030 Sum_probs=153.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C---CC-CHHHHHH
Q 003028 472 INCLGKAGHLQAAHQLFCEMVNQGC-IP----NLVTYNIMIALQAKARNYQSALKLYRDMQNAG--F---EP-DKVTYSI 540 (856)
Q Consensus 472 i~~y~k~g~~~~A~~lf~~m~~~g~-~p----d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g--i---~p-d~~ty~~ 540 (856)
...+...|++++|...|++..+.-. .+ ...++..+...|...|++++|+..+.+..+.. . .+ ...++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3456677888888888887765310 12 23467777888888888888888888765431 1 11 1346677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHH
Q 003028 541 VMEVLGHCGYLDEAEAVFAEMRRK----NWV-PDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA----GLRPNVPTCNSL 611 (856)
Q Consensus 541 ll~a~~~~g~~~~A~~l~~~m~~~----g~~-pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~----g~~pd~~t~n~L 611 (856)
+...|...|++++|...|.+..+. +.. ....++..+...|...|++++|...|++..+. +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 778888889999998888877653 111 12356778888899999999999999988761 223346788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC---CCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCc
Q 003028 612 LSAFLRVGQLSDAYHLLQGMLNLGL---KPSL-QTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDG 687 (856)
Q Consensus 612 i~ay~~~g~~e~A~~l~~~M~~~g~---~Pd~-~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~ 687 (856)
...|.+.|++++|...+++.++..- .|.. ..+..+-..+...++.+.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~----------------------------- 318 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK----------------------------- 318 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH-----------------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH-----------------------------
Confidence 9999999999999999999887311 2222 233333333444444211
Q ss_pred ccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 003028 688 QNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQ 738 (856)
Q Consensus 688 ~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~ 738 (856)
.+.+..+++... .......++..+...|.+.|++++|...|++..+
T Consensus 319 ---~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 319 ---IHDLLSYFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp ---HHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112222222211 0111234567899999999999999999998764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.90 E-value=9.5e-08 Score=105.76 Aligned_cols=223 Identities=9% Similarity=-0.023 Sum_probs=101.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CC-CHHHHHHHHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGL-SPD----TFTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GC-IP-NLVTYNIMIA 508 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~-~pd----~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~-~p-d~~ty~~Li~ 508 (856)
+...|++++|...|++..+.-. .++ ..++..+...|...|+++.|...+++..+. +. .+ ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 3455555555555555543210 011 234444555555555555555555544321 00 00 1234455555
Q ss_pred HHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHhhHHHHHH
Q 003028 509 LQAKARNYQSALKLYRDMQNA----GFEP-DKVTYSIVMEVLGHCGYLDEAEAVFAEMRR-----KNWVPDEPVYGLLVD 578 (856)
Q Consensus 509 ~~~~~g~~~~A~~ll~~M~~~----gi~p-d~~ty~~ll~a~~~~g~~~~A~~l~~~m~~-----~g~~pd~~~y~~Li~ 578 (856)
.|...|++++|++.|.+..+. +..+ ...++..+...|...|++++|...+++..+ .. .....++..+..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHH
Confidence 555555555555555544331 1110 122344455555555566666555555544 22 112444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 003028 579 LWGKAGNVRKAWEWYEAMLQAG----LRPNVPTCNSLLSAFLRVGQ---LSDAYHLLQGMLNLGLKPSL-QTYTLLLSCC 650 (856)
Q Consensus 579 ~~~k~g~~~~A~~l~~~m~~~g----~~pd~~t~n~Li~ay~~~g~---~e~A~~l~~~M~~~g~~Pd~-~ty~~Ll~a~ 650 (856)
.|.+.|++++|...+++..+.. -+.....+..+...|...++ +++|+..+++ .+..|+. ..+..+-..+
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHH
Confidence 5556666666666655555321 11112233444444444555 4455554443 1222222 2333344445
Q ss_pred HhcCCcchHHHHHHHH
Q 003028 651 TEARSPYDMGFCHELM 666 (856)
Q Consensus 651 ~~~g~~~~a~~l~~~m 666 (856)
...|+.++|...+++.
T Consensus 347 ~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 5555555555554443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-08 Score=105.75 Aligned_cols=134 Identities=16% Similarity=0.119 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------C-
Q 003028 395 VVTYNRLIHSYGRANYLNEALDVFKQMQVV------GC-EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA------G- 460 (856)
Q Consensus 395 ~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~------g~-~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~------g- 460 (856)
..+|..+...|...|++++|+..|++..+. +- +....+|..+...|...|++++|.+.|++.... .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 334555555555555555555555555432 11 122344555555666666666666666555443 0
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 461 LSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ------GCIP-NLVTYNIMIALQAKARNYQSALKLYRDMQN 528 (856)
Q Consensus 461 ~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~------g~~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 528 (856)
.+....++..+...|...|++++|..+|++..+. +..| ...++..+...|...|++++|+.+|+++.+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122445556666666667777777666666543 1111 244566667777777777777777776654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3.8e-06 Score=99.92 Aligned_cols=412 Identities=10% Similarity=0.034 Sum_probs=272.4
Q ss_pred CCCHHHHHHHHHhh---hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCCHH
Q 003028 324 SMDAYQANQVLKQL---QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQ---FGAINKLLDQMVRDG-CQPNVV 396 (856)
Q Consensus 324 ~~~~~~~~~vL~~l---~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~---~~~A~~lf~~m~~~g-~~pd~~ 396 (856)
.-+...|..+++.+ +....+..+|+.+... ++.+...|...+..-.+.+. ++.+..+|+...... ..|++.
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 45777888887754 5778999999999875 44567789999999889998 999999999998752 138999
Q ss_pred HHHHHHHHHHhcCCH--------HHHHHHHHHHHH-cCC-CCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYL--------NEALDVFKQMQV-VGC-EPD-RVTYCTLIDIHAK---------AGFLDVAMDMYKKM 456 (856)
Q Consensus 397 ty~~Li~~~~~~g~~--------~~A~~lf~~m~~-~g~-~pd-~~ty~~Ll~~~~k---------~g~~~~A~~l~~~m 456 (856)
.|...+....+.++. +...++|+.... .|. .++ ...|...+..... .++++.+..+|+..
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 999998877766543 344577877554 466 554 5678777765442 34578899999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHccC-------------CHHHHHHHHHHHHHc--CCC---CC-------------------
Q 003028 457 QAAGLSPDTFTYSVIINCLGKAG-------------HLQAAHQLFCEMVNQ--GCI---PN------------------- 499 (856)
Q Consensus 457 ~~~g~~pd~~ty~~Li~~y~k~g-------------~~~~A~~lf~~m~~~--g~~---pd------------------- 499 (856)
+......-..+|......--..+ +++.|...+.++... ++. |.
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 85322212344433222211111 233445555544321 111 10
Q ss_pred -HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCCCH
Q 003028 500 -LVTYNIMIALQAKAR-------NYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAE-AVFAEMRRKNWVPDE 570 (856)
Q Consensus 500 -~~ty~~Li~~~~~~g-------~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~-~l~~~m~~~g~~pd~ 570 (856)
...|...+..--..+ ..+.+..+|++.... +.-+...|...+..+...|+.++|. .+|+..... ++.+.
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~ 378 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSA 378 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCH
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCH
Confidence 234555554433222 134456778877765 2335667777778788889999996 999999874 34566
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003028 571 PVYGLLVDLWGKAGNVRKAWEWYEAMLQAG---------LRPN------------VPTCNSLLSAFLRVGQLSDAYHLLQ 629 (856)
Q Consensus 571 ~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g---------~~pd------------~~t~n~Li~ay~~~g~~e~A~~l~~ 629 (856)
..+-.++...-+.|+++.|..+|+.+.+.. -.|+ ..+|-..+....+.|..+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 677888888999999999999999988631 0132 3468888888889999999999999
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHh-cCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCC
Q 003028 630 GMLNL-GLKPSLQTYTLLLSCCTE-ARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRE 707 (856)
Q Consensus 630 ~M~~~-g~~Pd~~ty~~Ll~a~~~-~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~ 707 (856)
+.++. + .+....|......-.+ .++.+.|..+++...+.-+....++...+. +....+..+.+..+++........
T Consensus 459 ~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~-fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 459 KCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD-FLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH-HHHhCCCHHHHHHHHHHHHHhcCC
Confidence 99985 2 1222333322222223 355889999999887765543333322111 000112456778888876655442
Q ss_pred --chHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 003028 708 --SKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNV 741 (856)
Q Consensus 708 --~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~ 741 (856)
....+|..+++.-.+.|..+.+..+.+++.+.-.
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3567899999999999999999999999998754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-08 Score=105.16 Aligned_cols=226 Identities=15% Similarity=0.076 Sum_probs=153.2
Q ss_pred hcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHH
Q 003028 407 RANYLNEALDVFKQMQV-------VGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA------GL-SPDTFTYSVII 472 (856)
Q Consensus 407 ~~g~~~~A~~lf~~m~~-------~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~------g~-~pd~~ty~~Li 472 (856)
..|++++|+.+|++..+ ...+....++..+...|...|++++|...|++..+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555554433 222334677888999999999999999999998764 22 23456788899
Q ss_pred HHHHccCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCC-HHHH
Q 003028 473 NCLGKAGHLQAAHQLFCEMVNQ------GC-IPNLVTYNIMIALQAKARNYQSALKLYRDMQNA------GFEPD-KVTY 538 (856)
Q Consensus 473 ~~y~k~g~~~~A~~lf~~m~~~------g~-~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~------gi~pd-~~ty 538 (856)
..|...|++++|.+.|++..+. .. +....+|..+...|...|++++|+.+|+++.+. +-.|+ ..++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999988754 11 224567888999999999999999999988764 11232 4577
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCC-HhhHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCC
Q 003028 539 SIVMEVLGHCGYLDEAEAVFAEMRRK-------NWVPD-EPVYGLLVDLWGKAGNV------RKAWEWYEAMLQAGLRPN 604 (856)
Q Consensus 539 ~~ll~a~~~~g~~~~A~~l~~~m~~~-------g~~pd-~~~y~~Li~~~~k~g~~------~~A~~l~~~m~~~g~~pd 604 (856)
..+...+...|++++|..+++++.+. ...+. ...+..+...+...+.. ..+...++.+.. ..+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 88888999999999999999988763 11222 23333333333333322 222222222111 11123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 605 VPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 605 ~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
..++..+...|...|++++|..+|++.++
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45788899999999999999999998875
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-07 Score=112.08 Aligned_cols=166 Identities=9% Similarity=0.032 Sum_probs=133.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLID 438 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~ 438 (856)
+..+|+.|..+|.+.|++++|.+.|++..+.. +-+...|+.|...|.+.|++++|++.|++..+.. +-+...|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 35678888888999999999999998888752 2357788888888899999999999998887764 445778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQS 518 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~ 518 (856)
+|.+.|++++|++.|++.++.. +-+..+|+.+..+|.+.|++++|.+.|++..+.... +...|..|...|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 8888999999999888888763 336778888888888888888888888888775322 56778888888888888888
Q ss_pred HHHHHHHHHH
Q 003028 519 ALKLYRDMQN 528 (856)
Q Consensus 519 A~~ll~~M~~ 528 (856)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888776653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.3e-07 Score=91.12 Aligned_cols=206 Identities=14% Similarity=0.042 Sum_probs=149.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 428 PDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMI 507 (856)
Q Consensus 428 pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li 507 (856)
.|+..+..+...+...|++++|++.|++.++....++...+..+..+|...|++++|.+.|++..+.... +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4667888888899999999999999999988754367778877889999999999999999998876332 567888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HhhHHHHH
Q 003028 508 ALQAKARNYQSALKLYRDMQNAGFEPDK-------VTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPD---EPVYGLLV 577 (856)
Q Consensus 508 ~~~~~~g~~~~A~~ll~~M~~~gi~pd~-------~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd---~~~y~~Li 577 (856)
..|...|++++|+..|++..+... .+. ..|..+-..+...|++++|...|+...+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 999999999999999998887532 233 34666777788889999999999888764 343 45666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 578 DLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLL 647 (856)
Q Consensus 578 ~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll 647 (856)
..|...| ..+++++...+ ..+...|..+. ....+.+++|+..|++.++ +.|+......++
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l 220 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 6665443 34445554432 23444444443 3345668899999998887 456654443333
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.3e-07 Score=110.18 Aligned_cols=165 Identities=15% Similarity=0.134 Sum_probs=146.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
+...|+.|-..|.+.|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|++.|++.++.. +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56789999999999999999999999998864 4468899999999999999999999999999864 336889999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChH
Q 003028 474 CLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEP-DKVTYSIVMEVLGHCGYLD 552 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~p-d~~ty~~ll~a~~~~g~~~ 552 (856)
+|.+.|++++|.+.|++..+.... +...|+.+...|.+.|++++|++.|++..+.. | +...+..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccHH
Confidence 999999999999999998876432 67899999999999999999999999998763 4 4678899999999999999
Q ss_pred HHHHHHHHHHH
Q 003028 553 EAEAVFAEMRR 563 (856)
Q Consensus 553 ~A~~l~~~m~~ 563 (856)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-06 Score=89.31 Aligned_cols=196 Identities=10% Similarity=-0.013 Sum_probs=145.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 358 HDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 358 pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
.|+..|..+...+.+.|++++|...|+...+....++...|..+..+|...|++++|++.|++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35678888888899999999999999998876433677777778899999999999999999988764 34567888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 003028 438 DIHAKAGFLDVAMDMYKKMQAAGLSPDT-------FTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPN---LVTYNIMI 507 (856)
Q Consensus 438 ~~~~k~g~~~~A~~l~~~m~~~g~~pd~-------~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd---~~ty~~Li 507 (856)
.+|...|++++|++.|++..+.. +.+. .+|..+-..+...|++++|.+.|++..+. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999988763 2344 45777778888899999999999998875 344 45666677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003028 508 ALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN 565 (856)
Q Consensus 508 ~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g 565 (856)
..|...| ..+++++...+ ..+...|..... ...+.+++|...++...+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence 7775544 33445544433 223334433332 33466889999999888754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=2.7e-07 Score=98.46 Aligned_cols=166 Identities=13% Similarity=0.071 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC-C----
Q 003028 466 FTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GCIP-NLVTYNIMIALQAKA-RNYQSALKLYRDMQNAGFEP-D---- 534 (856)
Q Consensus 466 ~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~~p-d~~ty~~Li~~~~~~-g~~~~A~~ll~~M~~~gi~p-d---- 534 (856)
.+|+.+..+|.+.|++++|...|++..+. |-.. -..+|+.+...|... |++++|+..|++..+..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 34444555555555555555555444321 1000 123566677777775 88888888887765431100 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---
Q 003028 535 KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDE------PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNV--- 605 (856)
Q Consensus 535 ~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~------~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~--- 605 (856)
..++..+...+...|++++|...|+...+....... ..|..+..+|...|++++|...|++..+. .|+.
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~ 235 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCc
Confidence 235667777788888888888888887765432221 14566677788888888888888877642 2332
Q ss_pred ---HHHHHHHHHHH--HcCCHHHHHHHHHHHHH
Q 003028 606 ---PTCNSLLSAFL--RVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 606 ---~t~n~Li~ay~--~~g~~e~A~~l~~~M~~ 633 (856)
..+..++.+|. ..+++++|+..|+++..
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 23444556654 34568888888766643
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.71 E-value=8e-07 Score=80.71 Aligned_cols=126 Identities=12% Similarity=0.168 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK 442 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k 442 (856)
|..+...+...|++++|..+|+++.+.. +.+...|..+...+...|++++|..+|+++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3444444444455555555554444332 1234444444444444444444444444444332 2233334444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003028 443 AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEM 491 (856)
Q Consensus 443 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m 491 (856)
.|++++|.++++++.+.. +.+..++..+...|.+.|++++|.+.|+++
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 444444444444443331 122333334444444444444444444433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.70 E-value=9.5e-07 Score=80.18 Aligned_cols=131 Identities=15% Similarity=0.198 Sum_probs=111.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG 476 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~ 476 (856)
.|..+...|...|++++|..+|+++.+.. +.+...+..+...+...|++++|..+++++.... +.+...+..+...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 57778888999999999999999998764 4567888888999999999999999999998764 446788888999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003028 477 KAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAG 530 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g 530 (856)
..|++++|.++|+++.+... .+...+..+...|.+.|++++|...|+++....
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 99999999999999887642 367788889999999999999999999887653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.68 E-value=9.6e-06 Score=96.43 Aligned_cols=393 Identities=10% Similarity=0.073 Sum_probs=262.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHH
Q 003028 342 VALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANY---LNEALDVF 418 (856)
Q Consensus 342 ~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~---~~~A~~lf 418 (856)
..+..|+...... +.|...|..++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.+. ++.+.++|
T Consensus 50 d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3444455544433 358889999999999999999999999999986 66788899999999899998 99999999
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------c
Q 003028 419 KQMQVVG-CEPDRVTYCTLIDIHAKAGFL--------DVAMDMYKKMQA-AGL-SP-DTFTYSVIINCLG---------K 477 (856)
Q Consensus 419 ~~m~~~g-~~pd~~ty~~Ll~~~~k~g~~--------~~A~~l~~~m~~-~g~-~p-d~~ty~~Li~~y~---------k 477 (856)
++..... ..|++..|...+.-..+.++. +.+.++|+..+. .|. .+ +...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998753 138888999888877766653 345578877654 366 44 4578888877644 2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHc--CCC----------
Q 003028 478 AGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKAR-------------NYQSALKLYRDMQNA--GFE---------- 532 (856)
Q Consensus 478 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g-------------~~~~A~~ll~~M~~~--gi~---------- 532 (856)
.++++.+.++|+.........-..+|......--..+ .++.|...+.++... ++.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 3467889999999886422212234443332221111 223344555544321 211
Q ss_pred -----C-----C---HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHH-H
Q 003028 533 -----P-----D---KVTYSIVMEVLGHCG-------YLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAW-E 591 (856)
Q Consensus 533 -----p-----d---~~ty~~ll~a~~~~g-------~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~-~ 591 (856)
| + ...|...+.---..+ ..+.+..+|+++.... ..+..+|-..+..+...|+.++|. .
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1 1 123333333222222 1233556788887753 447788888888888899999996 9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHH
Q 003028 592 WYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLG---------LKPS------------LQTYTLLLSCC 650 (856)
Q Consensus 592 l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g---------~~Pd------------~~ty~~Ll~a~ 650 (856)
+|++.... ++.+...|-.++....+.|++++|.++|+++++.. -.|+ ...|...+...
T Consensus 366 il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 99999864 56678888899999999999999999999998631 0142 23577777777
Q ss_pred HhcCCcchHHHHHHHHHHc-CC-ChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhH
Q 003028 651 TEARSPYDMGFCHELMAVS-GH-PAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEE 728 (856)
Q Consensus 651 ~~~g~~~~a~~l~~~m~~~-g~-~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~ee 728 (856)
.+.+..+.|..+++...+. +. ..+.++.........+ +..+.+..+++.....- ..+..++..+++.....|+.+.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~-~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS-KDTKTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT-SCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHH
Confidence 7888899999999998876 32 2333332211111111 22355555655443332 2245567899999999999999
Q ss_pred HHHHHHHHHhCCC
Q 003028 729 AGSVWEVAAQKNV 741 (856)
Q Consensus 729 A~~lf~~m~~~~~ 741 (856)
|..+|++......
T Consensus 523 AR~lferal~~~~ 535 (679)
T 4e6h_A 523 VKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHTTTSS
T ss_pred HHHHHHHHHHhcC
Confidence 9999999987754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=4.8e-07 Score=96.50 Aligned_cols=178 Identities=13% Similarity=0.000 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 003028 445 FLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GCIPN-LVTYNIMIALQAKARNYQSA 519 (856)
Q Consensus 445 ~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~~pd-~~ty~~Li~~~~~~g~~~~A 519 (856)
++++|...|++. ...|...|++++|...|.+..+. |..++ ..+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666655 33466677777777777765542 21112 46788899999999999999
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCC-C----HhhHHHHHHHHHhcCCHHH
Q 003028 520 LKLYRDMQNAGFE-PD----KVTYSIVMEVLGHC-GYLDEAEAVFAEMRRKNWVP-D----EPVYGLLVDLWGKAGNVRK 588 (856)
Q Consensus 520 ~~ll~~M~~~gi~-pd----~~ty~~ll~a~~~~-g~~~~A~~l~~~m~~~g~~p-d----~~~y~~Li~~~~k~g~~~~ 588 (856)
+..|++..+.... .+ ..++..+...|... |++++|...|++..+..... + ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999987653111 11 34778888899996 99999999999987642111 1 3568889999999999999
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003028 589 AWEWYEAMLQAGLRPNV------PTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS 639 (856)
Q Consensus 589 A~~l~~~m~~~g~~pd~------~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd 639 (856)
|...|++..+....... ..|..+..+|...|++++|+..|++.++ +.|+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~ 231 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPN 231 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 99999999875322221 2678888899999999999999999875 4454
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.54 E-value=6.6e-06 Score=87.70 Aligned_cols=144 Identities=13% Similarity=0.103 Sum_probs=62.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 449 AMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGC-IPNLVTYNIMIALQAKARNYQSALKLYRDMQ 527 (856)
Q Consensus 449 A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~-~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 527 (856)
|+..|+++...+ .++..++..+..+|...|++++|++++.+....+. .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444443332 23333334444555555555555555554433322 1133444445555555555555555555554
Q ss_pred HcCCCC-----CHHHHHHHHHHHHh--cC--ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 528 NAGFEP-----DKVTYSIVMEVLGH--CG--YLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 528 ~~gi~p-----d~~ty~~ll~a~~~--~g--~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
+. .| +..+...++.++.. .| +..+|..+|+++.+. .|+......|+.++.+.|++++|+..++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 23 13333334433221 12 455555555554432 1232222333334555555555555555433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-05 Score=84.66 Aligned_cols=244 Identities=11% Similarity=0.052 Sum_probs=163.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003028 404 SYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQA 483 (856)
Q Consensus 404 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~ 483 (856)
-..-.|.+..++.-..++.. ..+...-..+.++|...|++... ..-.|....+..+...+ ..+
T Consensus 22 n~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----
Confidence 33446777777763333221 22223344455777777776632 12234444444444433 322
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003028 484 AHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFE-PDKVTYSIVMEVLGHCGYLDEAEAVFAEMR 562 (856)
Q Consensus 484 A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~-pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~ 562 (856)
|...|+++.+.+ .++..++..+..++...|++++|++++.+....+.. -+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778888877654 446666678889999999999999999998766542 246678888999999999999999999998
Q ss_pred HcCCCC-----CHhhHHHHHHHHH--hcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 563 RKNWVP-----DEPVYGLLVDLWG--KAG--NVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 563 ~~g~~p-----d~~~y~~Li~~~~--k~g--~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+. .| +..+...|..++. ..| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 35 3556666666633 334 899999999999764 46533434455589999999999999997764
Q ss_pred C-----CC---CCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 003028 634 L-----GL---KPS-LQTYTLLLSCCTEARSPYDMGFCHELMAVSGH 671 (856)
Q Consensus 634 ~-----g~---~Pd-~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~ 671 (856)
. .. .|+ ..++..++......|+ ++..++..+....+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 2 11 244 4566566666666676 77777777776654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.1e-06 Score=87.13 Aligned_cols=100 Identities=6% Similarity=-0.066 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPN---VVTYNRLIHSYGRANYLNEALDVFKQMQVVGC--EPDRVTY 433 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd---~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~--~pd~~ty 433 (856)
+...+-.+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|+..|++..+... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44555556666666677777777777666542 112 45566666666666777777777766665421 1113345
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHHC
Q 003028 434 CTLIDIHAK--------AGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 434 ~~Ll~~~~k--------~g~~~~A~~l~~~m~~~ 459 (856)
..+..++.. .|++++|+..|+++++.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 555555555 66666666666666554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.49 E-value=7e-06 Score=85.32 Aligned_cols=86 Identities=7% Similarity=0.019 Sum_probs=38.9
Q ss_pred hChhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHh-------
Q 003028 338 QDHTVALGFFNWLRRQAGFKHD-EHTYTTMVGILGRARQFGAINKLLDQMVRDGC-QP-NVVTYNRLIHSYGR------- 407 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd-~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~-~p-d~~ty~~Li~~~~~------- 407 (856)
++++.|+..|+.+....+-.+. ...+..+..+|.+.|++++|...|+...+... .| ....+..+..++..
T Consensus 29 g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~ 108 (261)
T 3qky_A 29 GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYEL 108 (261)
T ss_dssp TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTS
T ss_pred CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccc
Confidence 4555555555555432211111 33444455555555555555555555544310 01 12334444444444
Q ss_pred -cCCHHHHHHHHHHHHH
Q 003028 408 -ANYLNEALDVFKQMQV 423 (856)
Q Consensus 408 -~g~~~~A~~lf~~m~~ 423 (856)
.|++++|+..|+++.+
T Consensus 109 ~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 109 DQTDTRKAIEAFQLFID 125 (261)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHH
Confidence 5555555555555544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-05 Score=79.52 Aligned_cols=159 Identities=11% Similarity=0.027 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003028 364 TTMVGILGRARQFGAINKLLDQMVRDGCQPN-VVTYNR----------------LIHSYGRANYLNEALDVFKQMQVVGC 426 (856)
Q Consensus 364 ~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd-~~ty~~----------------Li~~~~~~g~~~~A~~lf~~m~~~g~ 426 (856)
-.....+...|++++|...|+...+. .|+ ...|.. +..+|.+.|++++|+..|++..+..
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 84 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA- 84 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 33444556677777777777776653 232 333333 5555555555555555555555443
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 427 EPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGH--LQAAHQLFCEMVNQGCIPNLVTYN 504 (856)
Q Consensus 427 ~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~--~~~A~~lf~~m~~~g~~pd~~ty~ 504 (856)
+-+...|..+..++...|++++|+..|++.++.. +-+..++..+...|...|+ .+.+...+..... ..|....+.
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~ 161 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARY 161 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 3344555555555555555555555555555542 2244455555544443332 2233333333321 111111222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 505 IMIALQAKARNYQSALKLYRDMQN 528 (856)
Q Consensus 505 ~Li~~~~~~g~~~~A~~ll~~M~~ 528 (856)
.+-.++...|++++|+..|++..+
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 233334444555555555555543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00017 Score=77.26 Aligned_cols=230 Identities=7% Similarity=-0.002 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHc---CCHH
Q 003028 377 GAINKLLDQMVRDGCQPNVVTYNRLIHSYGRAN--YLNEALDVFKQMQVVGCEPDRVTYCTLIDIH----AKA---GFLD 447 (856)
Q Consensus 377 ~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g--~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~----~k~---g~~~ 447 (856)
++|..+++.+...+ +-+...|+.--..+...+ ++++++++++.+.... +-+..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45555555555432 123344554444444455 5566666665555443 22333444333333 333 4556
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC------HHHH
Q 003028 448 VAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQ--AAHQLFCEMVNQGCIPNLVTYNIMIALQAKARN------YQSA 519 (856)
Q Consensus 448 ~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~--~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~------~~~A 519 (856)
+++++++.+.+.. +-+-.+|+--...+.+.|.++ ++.+.++.+.+.... |-..|+.-...+.+.+. ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 6666666665542 335555555555555555555 666666666655433 55566555444444444 6667
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 520 LKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDE-AEAVFAEMRRKN--WVPDEPVYGLLVDLWGKAGNVRKAWEWYEAM 596 (856)
Q Consensus 520 ~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~-A~~l~~~m~~~g--~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m 596 (856)
++.++++.... +-|...|+.+-..+.+.|+... +..+...+...+ -..+...+..+.+.|.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 77776666553 2345566666666666655333 334444433321 1235566677777777777777777777777
Q ss_pred HHcCCCCCHHHHHHH
Q 003028 597 LQAGLRPNVPTCNSL 611 (856)
Q Consensus 597 ~~~g~~pd~~t~n~L 611 (856)
.+.--+.....|+..
T Consensus 285 ~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 285 KSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHTTCGGGHHHHHHH
T ss_pred HhccChHHHHHHHHH
Confidence 653112334444443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.7e-05 Score=79.72 Aligned_cols=187 Identities=10% Similarity=-0.006 Sum_probs=85.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQVVGCEPD-RVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG 476 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd-~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~ 476 (856)
+-.....+.+.|++++|+..|++..+.. |+ ...|.. ...... ........+.+..+|.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~-----~~~~~~--------------~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYW-----TNVDKN--------------SEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHH-----HHSCTT--------------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHH-----hhhcch--------------hhhhHHHHHHHHHHHH
Confidence 3334455677888888888888877643 32 333333 000000 0001111222455555
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hHHH
Q 003028 477 KAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY--LDEA 554 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~--~~~A 554 (856)
+.|++++|...|++..+.... +...|..+...|...|++++|+..|++..+.. +-+...+..+...|...|+ ...+
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 555555555555555544221 44555555555555555555555555555432 1123444444444433332 2223
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003028 555 EAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSL 611 (856)
Q Consensus 555 ~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~L 611 (856)
...+..... ..|....+..+..++...|++++|...|++..+ +.|+......+
T Consensus 144 ~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l 196 (208)
T 3urz_A 144 ETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL 196 (208)
T ss_dssp HHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred HHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 333333221 111111222233344455666666666666654 34555444433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.6e-05 Score=78.65 Aligned_cols=86 Identities=14% Similarity=0.007 Sum_probs=39.8
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C--
Q 003028 548 CGYLDEAEAVFAEMRRKNWV-PDEPVYGLLVDLWGK----AGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRV-G-- 619 (856)
Q Consensus 548 ~g~~~~A~~l~~~m~~~g~~-pd~~~y~~Li~~~~k----~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~-g-- 619 (856)
.+++++|...|+...+.+.. .....+..|-.+|.. .+++++|..+|++..+. ..+...+..|...|... |
T Consensus 102 ~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~ 179 (212)
T 3rjv_A 102 ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGF 179 (212)
T ss_dssp SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTT
T ss_pred ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCC
Confidence 34445555555444443310 013444444444444 45555555555555543 12333444454444432 2
Q ss_pred ---CHHHHHHHHHHHHHCC
Q 003028 620 ---QLSDAYHLLQGMLNLG 635 (856)
Q Consensus 620 ---~~e~A~~l~~~M~~~g 635 (856)
+.++|+..|++..+.|
T Consensus 180 ~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 180 IEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp BCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcC
Confidence 5555555555555443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.35 E-value=3.5e-05 Score=78.31 Aligned_cols=185 Identities=9% Similarity=-0.011 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQ-P-NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDR----VTY 433 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~-p-d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~----~ty 433 (856)
...+..+...+.+.|++++|...|+.+.+.... + ....+..+..+|.+.|++++|++.|+++.+.. |+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 334555666677778888888888877764211 1 13456667777788888888888888777653 221 133
Q ss_pred HHHHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 003028 434 CTLIDIHAK------------------AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQG 495 (856)
Q Consensus 434 ~~Ll~~~~k------------------~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g 495 (856)
..+..++.+ .|++++|...|+++++.. +-+...+.++... ..+...+.
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHHH---
Confidence 333333433 456666666666666542 1122222111100 00000000
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003028 496 CIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD--KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN 565 (856)
Q Consensus 496 ~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd--~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g 565 (856)
.....+...|.+.|++++|+..|+++.+...... ...+..+..++.+.|+.++|.+.++.+...+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1123456678888888888888888877532211 2456777888888888888888888877654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.33 E-value=5.1e-06 Score=99.63 Aligned_cols=173 Identities=10% Similarity=-0.012 Sum_probs=130.1
Q ss_pred HHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 441 AKAGFLDVAMDMYKKMQ--------AAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK 512 (856)
Q Consensus 441 ~k~g~~~~A~~l~~~m~--------~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~ 512 (856)
...|++++|++.|++.. +. .+.+...+..+...|...|++++|.+.|++..+... -+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 66788888888888887 33 234567788888888888889888888888876532 267788888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 003028 513 ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEW 592 (856)
Q Consensus 513 ~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l 592 (856)
.|++++|++.|++..+... -+...|..+..++...|++++ ...|++..+.. .-+...|..+..+|.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999988877542 235567778888888899988 88888888754 23667888888889999999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHHcCC
Q 003028 593 YEAMLQAGLRPN-VPTCNSLLSAFLRVGQ 620 (856)
Q Consensus 593 ~~~m~~~g~~pd-~~t~n~Li~ay~~~g~ 620 (856)
|++..+. .|+ ...|..+..+|...++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 8887763 354 5667777777766555
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.9e-05 Score=84.68 Aligned_cols=128 Identities=10% Similarity=0.039 Sum_probs=65.0
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDV 417 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l 417 (856)
+++.+|.++++...+... .. .+...++++.|..+|+.. ...|...|++++|.+.
T Consensus 5 ~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 455667777766654211 00 011135666666665543 3456667777777777
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHH
Q 003028 418 FKQMQVV----GCEP-DRVTYCTLIDIHAKAGFLDVAMDMYKKMQAA----GLSP-DTFTYSVIINCLGKAGHLQAAHQL 487 (856)
Q Consensus 418 f~~m~~~----g~~p-d~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~----g~~p-d~~ty~~Li~~y~k~g~~~~A~~l 487 (856)
|.+..+. +-.. -..+|+.+...|.+.|++++|+..|++.++. |-.. -..+++.+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 7666432 1000 1235666666666667777766666665432 1000 12334444444544 555555555
Q ss_pred HHHHH
Q 003028 488 FCEMV 492 (856)
Q Consensus 488 f~~m~ 492 (856)
|++..
T Consensus 138 ~~~Al 142 (307)
T 2ifu_A 138 YQQAA 142 (307)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.31 E-value=6.4e-05 Score=76.34 Aligned_cols=183 Identities=11% Similarity=0.046 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCH-HHHHH
Q 003028 430 RVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLS-P-DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCI-PNL-VTYNI 505 (856)
Q Consensus 430 ~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~-p-d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~-pd~-~ty~~ 505 (856)
...+..+...+.+.|++++|+..|+++++.... + ....+..+..+|.+.|++++|...|+++.+.... +.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445556667788888888888888888775321 1 1356777778888888888888888888765322 111 13333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhH-----------
Q 003028 506 MIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPD-EPVY----------- 573 (856)
Q Consensus 506 Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd-~~~y----------- 573 (856)
+...+...+.. .+. .|..+...+...|+.++|...|+.+.+.. |+ ...+
T Consensus 84 ~g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 84 RGLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHH
Confidence 44444432100 000 01111112223344444444444444321 11 1111
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 574 ------GLLVDLWGKAGNVRKAWEWYEAMLQAGLRPN----VPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 574 ------~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd----~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
..+...|.+.|++++|...|+++.+. .|+ ...+..+..+|.+.|+.++|.+.++.+..
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 23344555666666666666666553 122 13455566666666666666666665554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-05 Score=84.85 Aligned_cols=162 Identities=10% Similarity=-0.037 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHH
Q 003028 465 TFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSI-VME 543 (856)
Q Consensus 465 ~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~-ll~ 543 (856)
...+..+...+...|++++|...|++....... +...+..+...|...|++++|..+|+++... .|+...... ...
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence 344444555555566666666666655543211 4455555666666666666666666655443 233222111 112
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCC
Q 003028 544 VLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPN---VPTCNSLLSAFLRVGQ 620 (856)
Q Consensus 544 a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd---~~t~n~Li~ay~~~g~ 620 (856)
.+...++.++|...+++..... +.+...+..+...|...|++++|...|+++.... |+ ...+..++..|...|+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHHcCC
Confidence 2444555566666666665543 2345566666666666666666666666666542 22 4566666667777777
Q ss_pred HHHHHHHHHHHH
Q 003028 621 LSDAYHLLQGML 632 (856)
Q Consensus 621 ~e~A~~l~~~M~ 632 (856)
.++|...|++.+
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 666666666544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.29 E-value=4e-05 Score=77.29 Aligned_cols=106 Identities=14% Similarity=0.075 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 003028 379 INKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAG----FLDVAMDMYK 454 (856)
Q Consensus 379 A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g----~~~~A~~l~~ 454 (856)
|.+.|....+. -+...+..|-..|...+++++|+++|++..+.| +...+..|-..|.. + ++++|++.|+
T Consensus 5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 44444444443 244445555555555555555555555554433 33444444444444 3 4555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHc
Q 003028 455 KMQAAGLSPDTFTYSVIINCLGK----AGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 455 ~m~~~g~~pd~~ty~~Li~~y~k----~g~~~~A~~lf~~m~~~ 494 (856)
+..+.| +...+..|-.+|.. .+++++|.++|++..+.
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc
Confidence 544432 33444444444443 44444444444444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.28 E-value=8.4e-06 Score=79.44 Aligned_cols=160 Identities=8% Similarity=0.002 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI-HA 441 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~-~~ 441 (856)
+..+...+.+.|++++|...|+...+.. +.+...|..+...|.+.|++++|+..|++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3445555666666666666666654421 2345566666666666666666666666654432 233222221111 11
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 003028 442 KAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIP-NLVTYNIMIALQAKARNYQSAL 520 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~p-d~~ty~~Li~~~~~~g~~~~A~ 520 (856)
..+...+|...|++..+.. +-+...+..+...|...|++++|...|+++.+....+ +...+..+...|...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1122223455555555432 2234555555555555555555555555555442211 2334555555555555555555
Q ss_pred HHHHHH
Q 003028 521 KLYRDM 526 (856)
Q Consensus 521 ~ll~~M 526 (856)
..|++.
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.6e-05 Score=92.98 Aligned_cols=151 Identities=13% Similarity=-0.011 Sum_probs=63.6
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003028 339 DHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVF 418 (856)
Q Consensus 339 ~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf 418 (856)
++++|++.|+...+.. ..+...|..+...+.+.|++++|.+.|++..+.. +.+...|..+...|...|++++|.+.|
T Consensus 4 ~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 4 DGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444555554443211 1124445555555555555555555555554431 123444455555555555555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHc
Q 003028 419 KQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKA---GHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 419 ~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~---g~~~~A~~lf~~m~~~ 494 (856)
++..+.. +.+...|..+..+|.+.|++++|.+.|++..+.. +.+...+..+...|... |+.++|.+.|++..+.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 5544432 2234444445555555555555555555544432 12344444444444444 5555555555544443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-05 Score=84.22 Aligned_cols=164 Identities=12% Similarity=0.015 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI- 437 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll- 437 (856)
+...+..+...+...|++++|..+|++..+.. +-+...+..|...|.+.|++++|..+|+++... .|+........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 34455566666677777777777777766542 235566666777777777777777777766543 34433322222
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCH
Q 003028 438 DIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCI-PNLVTYNIMIALQAKARNY 516 (856)
Q Consensus 438 ~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~-pd~~ty~~Li~~~~~~g~~ 516 (856)
..+.+.++.++|...|++..+.. +.+...+..+...|...|++++|...|.++...... .+...+..|...|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 22445566666666666666652 335666666667777777777777777766654221 1245666666666666666
Q ss_pred HHHHHHHHHH
Q 003028 517 QSALKLYRDM 526 (856)
Q Consensus 517 ~~A~~ll~~M 526 (856)
++|...|++.
T Consensus 272 ~~a~~~~r~a 281 (287)
T 3qou_A 272 DALASXYRRQ 281 (287)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 6666666554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.3e-05 Score=85.96 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=66.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 373 ARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDM 452 (856)
Q Consensus 373 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l 452 (856)
.|++++|.+++++..+.. +.. + +...+++++|...|.+. ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 456677777777665431 111 0 11146677777776654 3456667777777777
Q ss_pred HHHHHHCC----CC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 453 YKKMQAAG----LS-PDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GCIP-NLVTYNIMIALQAKARNYQSALKL 522 (856)
Q Consensus 453 ~~~m~~~g----~~-pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~~p-d~~ty~~Li~~~~~~g~~~~A~~l 522 (856)
|.+..+.. -. .-..+|+.+..+|.+.|++++|...|++..+. |-.. -..+|+.+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 77665421 00 01234555556666666666666666554321 1000 12344444445544 555555555
Q ss_pred HHHHH
Q 003028 523 YRDMQ 527 (856)
Q Consensus 523 l~~M~ 527 (856)
|++..
T Consensus 138 ~~~Al 142 (307)
T 2ifu_A 138 YQQAA 142 (307)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.27 E-value=9.4e-06 Score=79.09 Aligned_cols=162 Identities=10% Similarity=0.059 Sum_probs=111.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINC-LG 476 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~-y~ 476 (856)
+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4455667778888888888888876543 4456778888888888888888888888876542 344433332212 12
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 003028 477 KAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEP-DKVTYSIVMEVLGHCGYLDEAE 555 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~p-d~~ty~~ll~a~~~~g~~~~A~ 555 (856)
..++..+|...|++..+... -+...+..+...+...|++++|+..|+++.+....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22233346777777776532 257778888888888888888888888887764332 2456777888888888888888
Q ss_pred HHHHHHHH
Q 003028 556 AVFAEMRR 563 (856)
Q Consensus 556 ~l~~~m~~ 563 (856)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00016 Score=77.38 Aligned_cols=221 Identities=8% Similarity=0.009 Sum_probs=142.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hcc---
Q 003028 408 ANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAG--FLDVAMDMYKKMQAAGLSPDTFTYSVIINCL----GKA--- 478 (856)
Q Consensus 408 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g--~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y----~k~--- 478 (856)
....++|+++++++.... +-+...|+.--.++...+ ++++++++++.++... +-+..+|+.--..+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 344568888888887764 345566777777777777 8888888888888763 23455555433333 344
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------
Q 003028 479 GHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQ--SALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY------ 550 (856)
Q Consensus 479 g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~--~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~------ 550 (856)
++++++.++++.+.+...+ +-.+|+.-.-.+.+.|.++ ++++.++++.+... -|-..|+.-...+.+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhh
Confidence 6788888888888776433 7777777777777777777 78888888877643 255566655555555555
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 551 LDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRK-AWEWYEAMLQAG--LRPNVPTCNSLLSAFLRVGQLSDAYHL 627 (856)
Q Consensus 551 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~-A~~l~~~m~~~g--~~pd~~t~n~Li~ay~~~g~~e~A~~l 627 (856)
++++.+.++.+..... -|...|+-+-..+.+.|+... +..+.+++.+.+ -..+...+..+...|.+.|+.++|+++
T Consensus 202 ~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 6666666666666542 366666666666666665333 344554443321 134566667777777777777777777
Q ss_pred HHHHHH
Q 003028 628 LQGMLN 633 (856)
Q Consensus 628 ~~~M~~ 633 (856)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777664
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.25 E-value=7.5e-06 Score=98.18 Aligned_cols=174 Identities=11% Similarity=-0.033 Sum_probs=115.9
Q ss_pred hhhChhHHHHHHHHHHH-----h-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003028 336 QLQDHTVALGFFNWLRR-----Q-AGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRAN 409 (856)
Q Consensus 336 ~l~~~~~Al~~f~~m~~-----~-~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g 409 (856)
..+++++|++.|+...+ . .....+...|..+..+|.+.|++++|...|++..+.. +.+...|..+..+|.+.|
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcC
Confidence 34677788888877751 0 1112345567777777888888888888888777642 236667777777788888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003028 410 YLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFC 489 (856)
Q Consensus 410 ~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~ 489 (856)
++++|++.|++..+.. +-+...|..+..+|.+.|++++ ++.|++.++.. +-+...|..+..+|.+.|++++|.+.|+
T Consensus 482 ~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888777654 3356677777777777888877 77777777653 3356677777777777777777777777
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHHcCC
Q 003028 490 EMVNQGCIPN-LVTYNIMIALQAKARN 515 (856)
Q Consensus 490 ~m~~~g~~pd-~~ty~~Li~~~~~~g~ 515 (856)
+..+. .|+ ...|..+..++...++
T Consensus 559 ~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTT--STTHHHHHHHHHHHTC----
T ss_pred hhccc--CcccHHHHHHHHHHHHccCC
Confidence 76654 233 4556666666555444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.25 E-value=7.9e-05 Score=78.96 Aligned_cols=162 Identities=9% Similarity=0.018 Sum_probs=99.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 003028 472 INCLGKAGHLQAAHQLFCEMVNQGC-IPNL----VTYNIMIALQAKARNYQSALKLYRDMQNAGFE-PD----KVTYSIV 541 (856)
Q Consensus 472 i~~y~k~g~~~~A~~lf~~m~~~g~-~pd~----~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~-pd----~~ty~~l 541 (856)
+..+...|++++|.++++...+... .|+. ..+..+...+...+++++|+..|++....... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556666777777777776665321 1121 12233555555666777777777777653221 22 2246667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 003028 542 MEVLGHCGYLDEAEAVFAEMRRK-----NWVP-DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA----GLRPN-VPTCNS 610 (856)
Q Consensus 542 l~a~~~~g~~~~A~~l~~~m~~~-----g~~p-d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~----g~~pd-~~t~n~ 610 (856)
...|...|++++|...|+.+.+. +..+ ...+|..+...|.+.|++++|...+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77777777777777777776631 1111 1236677777888888888888888776532 21222 567788
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHH
Q 003028 611 LLSAFLRVGQ-LSDAYHLLQGMLN 633 (856)
Q Consensus 611 Li~ay~~~g~-~e~A~~l~~~M~~ 633 (856)
+..+|.+.|+ +++|.+.|++.+.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888884 5888888877664
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=2.4e-05 Score=91.49 Aligned_cols=154 Identities=10% Similarity=-0.035 Sum_probs=114.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 373 ARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDM 452 (856)
Q Consensus 373 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l 452 (856)
.|++++|.+.|++..+.. +.+...|..+...|.+.|++++|.+.|++..+.. +.+...|..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478889999999887642 3357888899999999999999999999988764 44678888899999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHc
Q 003028 453 YKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKA---RNYQSALKLYRDMQNA 529 (856)
Q Consensus 453 ~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~---g~~~~A~~ll~~M~~~ 529 (856)
|++..+.. +.+...+..+..+|.+.|++++|.+.|++..+... .+...+..+...+... |++++|.+.|++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998863 34678888899999999999999999998887633 2677888888999999 9999999999988876
Q ss_pred C
Q 003028 530 G 530 (856)
Q Consensus 530 g 530 (856)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00046 Score=79.14 Aligned_cols=203 Identities=8% Similarity=-0.049 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 517 QSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAM 596 (856)
Q Consensus 517 ~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m 596 (856)
+.+..+|+++.... +.+...|...+.-+...|+.+.|..++++.... +.+...+. .|+...+.++ +++.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~---~~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEA---VYGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTH---HHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhH---HHHHH
Confidence 34556666665532 233455655566666667777777777776665 22222211 1222111111 12222
Q ss_pred HHcC---------C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCcchHHHH
Q 003028 597 LQAG---------L---RPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTL--LLSCCTEARSPYDMGFC 662 (856)
Q Consensus 597 ~~~g---------~---~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~--Ll~a~~~~g~~~~a~~l 662 (856)
.+.- . ......|-..+..+.+.++.+.|..+|.+. ... ..+...|.. .+... ..++.+.|..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~-~~~d~~~ar~i 342 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY-ATGSRATPYNI 342 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH-HHCCSHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH-HCCChHHHHHH
Confidence 2110 0 001244666666666666777777777777 211 123333332 12211 12346677777
Q ss_pred HHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 003028 663 HELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQ 738 (856)
Q Consensus 663 ~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~ 738 (856)
++...+..+....++..... .....+..+.+..+++.+. ....+|..+++.=...|+.+.+..+++++..
T Consensus 343 fe~al~~~~~~~~~~~~yid-~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 343 FSSGLLKHPDSTLLKEEFFL-FLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHCTTCHHHHHHHHH-HHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77666544332222111000 0000112345566666652 2467899999988899999999999998875
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.19 E-value=8.6e-05 Score=73.94 Aligned_cols=127 Identities=10% Similarity=-0.014 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK 442 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k 442 (856)
+..+...+...|++++|...|++.. .|+...|..+...|.+.|++++|++.|++..... +.+...|..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4455666777788888888776653 4577777777778888888888888887776654 4456677777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 003028 443 AGFLDVAMDMYKKMQAAGLS--------------P-DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 443 ~g~~~~A~~l~~~m~~~g~~--------------p-d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
.|++++|.+.|++..+.... | ....+..+..+|.+.|++++|.+.|+...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 88888888888777764211 0 1256666677777777777777777777654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00012 Score=72.97 Aligned_cols=129 Identities=11% Similarity=-0.056 Sum_probs=107.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG 476 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~ 476 (856)
.+..+...+...|++++|++.|++.. .|+...|..+...|.+.|++++|++.|++..+.. +.+...|..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 35566777888999999999998873 6788899999999999999999999999998864 457788889999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003028 477 KAGHLQAAHQLFCEMVNQGCI--------------P-NLVTYNIMIALQAKARNYQSALKLYRDMQNAG 530 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~~g~~--------------p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g 530 (856)
..|++++|.+.|+...+.... | ....|..+...|.+.|++++|.+.|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999998875321 1 22678888899999999999999999988754
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.14 E-value=8.8e-05 Score=70.23 Aligned_cols=126 Identities=10% Similarity=0.013 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGK 477 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k 477 (856)
|..+...+...|++++|...|++..... +.+..++..+..++...|++++|.+.+++..+.. +.+..++..+..+|..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 4444444555555555555555554432 2234445555555555555555555555555432 2244455555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHH
Q 003028 478 AGHLQAAHQLFCEMVNQGCIPNLVTYN--IMIALQAKARNYQSALKLYRDM 526 (856)
Q Consensus 478 ~g~~~~A~~lf~~m~~~g~~pd~~ty~--~Li~~~~~~g~~~~A~~ll~~M 526 (856)
.|++++|.+.|++..+.... +...+. .++..+...|++++|++.+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 55555555555555543211 222332 2222344555555555555543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00041 Score=73.38 Aligned_cols=163 Identities=9% Similarity=0.022 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CC--H
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNV------VTYNRLIHSYGRANYLNEALDVFKQMQVVGCE---PD--R 430 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~------~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~---pd--~ 430 (856)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|++.|++....... +. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444556666677777777776666553211 11 11223344455556666666666665432111 11 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-C
Q 003028 431 VTYCTLIDIHAKAGFLDVAMDMYKKMQAA--GLSPD----TFTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GCIP-N 499 (856)
Q Consensus 431 ~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~--g~~pd----~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~~p-d 499 (856)
.+|+.+...|...|++++|...|++..+. ..+.+ ..++..+...|.+.|++++|...|++..+. +... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 35555556666666666666666555421 01111 134455555555555555555555544321 0000 0
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 003028 500 LVTYNIMIALQAKARNYQSA-LKLYRD 525 (856)
Q Consensus 500 ~~ty~~Li~~~~~~g~~~~A-~~ll~~ 525 (856)
..+|..+...|.+.|++++| ...|++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 33444445555555555555 443443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00011 Score=65.34 Aligned_cols=94 Identities=13% Similarity=0.205 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
.|..+...+...|++++|.++|+++.+.. +.+...|..+...+.+.|++++|..+|+++.... +.+..++..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 34444444444444444444444444321 1233334444444444444444444444443322 223333333333444
Q ss_pred HcCCHHHHHHHHHHHH
Q 003028 442 KAGFLDVAMDMYKKMQ 457 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~ 457 (856)
..|++++|...|+++.
T Consensus 89 ~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 89 KQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHH
Confidence 4444444444444333
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-05 Score=76.51 Aligned_cols=84 Identities=10% Similarity=-0.088 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 433 YCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK 512 (856)
Q Consensus 433 y~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~ 512 (856)
+..+...|.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|...|+...+.... +...|..+...|.+
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3334444444444444444444444432 123444444444444444444444444444433211 33344444444444
Q ss_pred cCCHHH
Q 003028 513 ARNYQS 518 (856)
Q Consensus 513 ~g~~~~ 518 (856)
.|++++
T Consensus 112 ~~~~~~ 117 (150)
T 4ga2_A 112 NDVTDG 117 (150)
T ss_dssp HCSSSS
T ss_pred cCChHH
Confidence 444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0004 Score=73.45 Aligned_cols=160 Identities=9% Similarity=0.020 Sum_probs=83.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 003028 367 VGILGRARQFGAINKLLDQMVRDGC-QPNV----VTYNRLIHSYGRANYLNEALDVFKQMQVVGCE-PD----RVTYCTL 436 (856)
Q Consensus 367 i~~~~k~g~~~~A~~lf~~m~~~g~-~pd~----~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~-pd----~~ty~~L 436 (856)
+..+...|++++|..++++..+... .++. ..+..+...+...+++++|+..|++....... ++ ..+|+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5566677777777777777665311 1111 12233455555566777777777766653211 12 2246666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 003028 437 IDIHAKAGFLDVAMDMYKKMQAA-----GLSPD-TFTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GCIPN-LVTYNI 505 (856)
Q Consensus 437 l~~~~k~g~~~~A~~l~~~m~~~-----g~~pd-~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~~pd-~~ty~~ 505 (856)
...|...|++++|...|+++.+. +..+. ..+|..+...|.+.|++++|...+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66666666666666666666531 11111 224455555566666666666655544321 11111 344555
Q ss_pred HHHHHHHcC-CHHHHHHHHHHH
Q 003028 506 MIALQAKAR-NYQSALKLYRDM 526 (856)
Q Consensus 506 Li~~~~~~g-~~~~A~~ll~~M 526 (856)
+...|.+.| .+++|++.|++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 555555555 345555555544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00014 Score=68.85 Aligned_cols=130 Identities=14% Similarity=0.045 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 361 HTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIH 440 (856)
Q Consensus 361 ~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~ 440 (856)
..|..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|++.|++..... +.+...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 467788888999999999999999988753 3478889999999999999999999999998764 55678899999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHHHH
Q 003028 441 AKAGFLDVAMDMYKKMQAAGLSPDTFTYS--VIINCLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 441 ~k~g~~~~A~~l~~~m~~~g~~pd~~ty~--~Li~~y~k~g~~~~A~~lf~~m~~ 493 (856)
...|++++|...|++..+.. +.+...+. .+...+.+.|++++|.+.+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999998863 23455553 344447788999999998887643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00015 Score=64.56 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003028 395 VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINC 474 (856)
Q Consensus 395 ~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~ 474 (856)
...|..+...+...|++++|.++|+++.... +.+..++..+...+.+.|++++|..+|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5678888899999999999999999998764 4567888899999999999999999999998763 4578888999999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003028 475 LGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKAR 514 (856)
Q Consensus 475 y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g 514 (856)
|...|++++|...|+++.+... .+...+..+...+...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhcc
Confidence 9999999999999999887642 25566666666665543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0027 Score=72.67 Aligned_cols=83 Identities=7% Similarity=0.060 Sum_probs=48.2
Q ss_pred hChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHH----hcCC
Q 003028 338 QDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQ-FGAINKLLDQMVRD-GCQ-PNVVTYNRLIHSYG----RANY 410 (856)
Q Consensus 338 ~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~-~~~A~~lf~~m~~~-g~~-pd~~ty~~Li~~~~----~~g~ 410 (856)
++.+.|..+|+.... ..|++..|...+....+.+. .+....+|+..... |.. .+...|...+..+. .+++
T Consensus 28 ~~~e~~~~iferal~---~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLK---KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 456667777776654 23577777777776666653 34455666665542 322 35566666666543 2345
Q ss_pred HHHHHHHHHHHHH
Q 003028 411 LNEALDVFKQMQV 423 (856)
Q Consensus 411 ~~~A~~lf~~m~~ 423 (856)
++.+..+|++...
T Consensus 105 ~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 105 IEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 6667777777765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=9.9e-06 Score=76.97 Aligned_cols=84 Identities=8% Similarity=0.099 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003028 364 TTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKA 443 (856)
Q Consensus 364 ~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~ 443 (856)
-.+..+|.+.|++++|.+.|++..+.. +-+...|..+..+|.+.|++++|+..|++..+.. +-+..+|..+...|.+.
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 334444555555555555555544431 1234445555555555555555555555544432 22344444444445555
Q ss_pred CCHHHH
Q 003028 444 GFLDVA 449 (856)
Q Consensus 444 g~~~~A 449 (856)
|++++|
T Consensus 113 ~~~~~a 118 (150)
T 4ga2_A 113 DVTDGR 118 (150)
T ss_dssp CSSSSH
T ss_pred CChHHH
Confidence 544433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.03 E-value=4.3e-05 Score=75.26 Aligned_cols=156 Identities=14% Similarity=0.023 Sum_probs=88.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCh
Q 003028 477 KAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNA----GFEP-DKVTYSIVMEVLGHCGYL 551 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~----gi~p-d~~ty~~ll~a~~~~g~~ 551 (856)
..|++++|.++++.+... .......+..+...|...|++++|+..+++.... +..+ ....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644443321 1123445666666666666666666666655431 1111 133455556666667777
Q ss_pred HHHHHHHHHHHHc----CCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC
Q 003028 552 DEAEAVFAEMRRK----NWV--PDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGL-RPN----VPTCNSLLSAFLRVGQ 620 (856)
Q Consensus 552 ~~A~~l~~~m~~~----g~~--pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~-~pd----~~t~n~Li~ay~~~g~ 620 (856)
++|...+.+..+. +.. .....+..+...+...|++++|...+++..+..- ..+ ..++..+...|...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777665542 101 1134466667777777888888777777653200 112 2345677778888888
Q ss_pred HHHHHHHHHHHHH
Q 003028 621 LSDAYHLLQGMLN 633 (856)
Q Consensus 621 ~e~A~~l~~~M~~ 633 (856)
+++|.+.+++.++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877664
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0014 Score=71.00 Aligned_cols=136 Identities=8% Similarity=0.034 Sum_probs=67.6
Q ss_pred ChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHHHH
Q 003028 339 DHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRAR-QFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRA-N-YLNEAL 415 (856)
Q Consensus 339 ~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g-~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~-g-~~~~A~ 415 (856)
....|+++++.+.... .-+..+|+.--.++...+ .+++++.+++.+.... +.+...|+.--..+.+. + ++++++
T Consensus 69 ~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 69 KSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3345666666665422 123445666555555555 3666666666666542 23555565555444444 4 556666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 003028 416 DVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLD--------VAMDMYKKMQAAGLSPDTFTYSVIINCLGKAG 479 (856)
Q Consensus 416 ~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~--------~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g 479 (856)
++++++.+.. +.|-.+|+.-.-++.+.+.++ ++++.++++++.. +-|...|+-....+.+.+
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTST
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence 6666665443 334555554444444444333 4444444444432 224444444444444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.01 E-value=5.5e-05 Score=74.47 Aligned_cols=155 Identities=13% Similarity=0.087 Sum_probs=80.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCH
Q 003028 372 RARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVV----GCE-PDRVTYCTLIDIHAKAGFL 446 (856)
Q Consensus 372 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~----g~~-pd~~ty~~Ll~~~~k~g~~ 446 (856)
..|++++|.++++.+... .......+..+...|...|++++|+..|++.... +.. ....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456677777744444321 1124456666666777777777777777666441 111 1234555566666666666
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCC
Q 003028 447 DVAMDMYKKMQAA----GLSP--DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GCIP-NLVTYNIMIALQAKARN 515 (856)
Q Consensus 447 ~~A~~l~~~m~~~----g~~p--d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~~p-d~~ty~~Li~~~~~~g~ 515 (856)
++|...+++..+. +-.+ ....+..+...|...|++++|...|++.... +... -..++..+...|...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666665442 1011 1234455556666666666666666655421 1000 11233455555666666
Q ss_pred HHHHHHHHHHHH
Q 003028 516 YQSALKLYRDMQ 527 (856)
Q Consensus 516 ~~~A~~ll~~M~ 527 (856)
+++|.+.+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666555443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00018 Score=76.25 Aligned_cols=127 Identities=8% Similarity=-0.003 Sum_probs=71.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHc---C-CCC--CHhhHH
Q 003028 506 MIALQAKARNYQSALKLYRDMQNAGF---EPD--KVTYSIVMEVLGHCGYLDEAEAVFAEMRRK---N-WVP--DEPVYG 574 (856)
Q Consensus 506 Li~~~~~~g~~~~A~~ll~~M~~~gi---~pd--~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~---g-~~p--d~~~y~ 574 (856)
+...+...|++++|+..|.+...... .+. ..+|+.+...|...|++++|...|++..+. . ..+ ...++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 33444455566666666555543211 111 235555555666666666666666655421 1 001 114666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 003028 575 LLVDLWGKAGNVRKAWEWYEAMLQAG----LRP-NVPTCNSLLSAFLRVGQLSDA-YHLLQGML 632 (856)
Q Consensus 575 ~Li~~~~k~g~~~~A~~l~~~m~~~g----~~p-d~~t~n~Li~ay~~~g~~e~A-~~l~~~M~ 632 (856)
.+...|.+.|++++|...+++..+.. ... -..+|..+...|.+.|++++| ...|++.+
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 67777777777777777777665321 111 155677777778888888887 66666654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00015 Score=65.04 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQ 422 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~ 422 (856)
+..+...+...|+++.|...|+...... +.+...|..+...|...|++++|.+.+++..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 73 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAI 73 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 3333344444444444444444433321 1233333333344444444444444444333
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00021 Score=64.12 Aligned_cols=120 Identities=10% Similarity=0.058 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
+...|..+...+...|++++|.+.|++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45667788888899999999999999987764 4567888888899999999999999999988763 346788888889
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003028 474 CLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNY 516 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~ 516 (856)
.|...|++++|.+.|++..+... .+...+..+...+.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 99999999999999998887632 2667788888888777764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00016 Score=65.42 Aligned_cols=97 Identities=11% Similarity=0.028 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI 439 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~ 439 (856)
...|..+...+.+.|++++|...|++..+.. +.+...|..+...|...|++++|++.|++..+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3344444444555555555555555444321 1234444444444444444444444444444332 2233344444444
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 003028 440 HAKAGFLDVAMDMYKKMQA 458 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~ 458 (856)
+.+.|++++|.+.|++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 4444444444444444433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0002 Score=64.76 Aligned_cols=119 Identities=7% Similarity=-0.054 Sum_probs=94.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 393 PNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVII 472 (856)
Q Consensus 393 pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li 472 (856)
.+...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 456778888888999999999999999887653 4467788888888889999999999999988763 34678888888
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003028 473 NCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKAR 514 (856)
Q Consensus 473 ~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g 514 (856)
.+|.+.|++++|.+.|++..+... -+...+..+...+...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 899999999999999998876532 24556677777776655
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0032 Score=68.25 Aligned_cols=184 Identities=10% Similarity=0.051 Sum_probs=129.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRAN-YLNEALDVFKQMQVVGCEPDRVTYCTLIDIH 440 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g-~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~ 440 (856)
.++.+-..+.+....++|.++++.+.... +-+...|+.--..+...+ .+++++++++.+.... +-+..+|+.-..++
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 44444445555666678999999998763 336667887777777777 5999999999998765 55777888877777
Q ss_pred HHc-C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 441 AKA-G-FLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQ--------AAHQLFCEMVNQGCIPNLVTYNIMIALQ 510 (856)
Q Consensus 441 ~k~-g-~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~--------~A~~lf~~m~~~g~~pd~~ty~~Li~~~ 510 (856)
.+. + ++++++++++.+.+.. +-|-.+|+--...+.+.|.++ ++.+.++++.+..+. |...|+.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 776 6 8888999999888763 346777776555555555555 788888888776544 777888777777
Q ss_pred HHcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003028 511 AKARN-------YQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY 550 (856)
Q Consensus 511 ~~~g~-------~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~ 550 (856)
.+.+. ++++++.++++.... +-|...|+.+-..+.+.|.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 77665 677777777776653 2355666665555555554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0004 Score=63.63 Aligned_cols=96 Identities=9% Similarity=0.012 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
.|......|.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|++.|++..+.. +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 45566667777777777777777766542 3356667777777777777777777777766654 445666667777777
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 003028 442 KAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~~ 459 (856)
..|++++|++.|++.++.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 777777777777776664
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0004 Score=63.65 Aligned_cols=96 Identities=11% Similarity=0.051 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG 476 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~ 476 (856)
.|..+...|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.|++.++.. +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 34455556666666666666666665543 3445556666666666666666666666665542 224555555556666
Q ss_pred ccCCHHHHHHHHHHHHHc
Q 003028 477 KAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~~ 494 (856)
..|++++|.+.|+...+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 666666666666655543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00036 Score=75.78 Aligned_cols=129 Identities=8% Similarity=0.042 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPN----------------VVTYNRLIHSYGRANYLNEALDVFKQMQV 423 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd----------------~~ty~~Li~~~~~~g~~~~A~~lf~~m~~ 423 (856)
...|..+...|.+.|++++|...|++..+.. |+ ...|..+..+|.+.|++++|+..|++..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4467788888889999999999999888753 33 46777777777777777777777777776
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH-HHHHHHHH
Q 003028 424 VGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAA-HQLFCEMV 492 (856)
Q Consensus 424 ~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A-~~lf~~m~ 492 (856)
.. +.+...|..+..+|...|++++|+..|++.++.. +-+..++..+..++.+.|+.++| .++|..|.
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 4456677777777777777777777777776652 33566666677777777777666 33455443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00019 Score=75.47 Aligned_cols=89 Identities=10% Similarity=0.070 Sum_probs=39.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhc
Q 003028 471 IINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD--KVTYSIVMEVLGHC 548 (856)
Q Consensus 471 Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd--~~ty~~ll~a~~~~ 548 (856)
+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+-.++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 4444555555555555555554332 222233334445555555555555554322210 000 11233344444444
Q ss_pred CChHHHHHHHHHHH
Q 003028 549 GYLDEAEAVFAEMR 562 (856)
Q Consensus 549 g~~~~A~~l~~~m~ 562 (856)
|++++|+..|++..
T Consensus 185 G~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 185 ALFTEAERRLTEAN 198 (282)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 55555555544444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00036 Score=75.76 Aligned_cols=146 Identities=11% Similarity=-0.028 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 464 DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVME 543 (856)
Q Consensus 464 d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~ 543 (856)
+...+..+...|.+.|++++|...|++..+....... + ..+.+.++- .+ ....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~~~~-~~-------~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--F-----------SNEEAQKAQ-AL-------RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--C-----------CSHHHHHHH-HH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc--C-----------ChHHHHHHH-HH-------HHHHHHHHHH
Confidence 4556666667777777777777777766654211100 0 000000000 00 0234555555
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 544 VLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSD 623 (856)
Q Consensus 544 a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~ 623 (856)
+|.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+...+.+.|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666665543 2245566666666777777777777777666542 3355666667777777777776
Q ss_pred H-HHHHHHHH
Q 003028 624 A-YHLLQGML 632 (856)
Q Consensus 624 A-~~l~~~M~ 632 (856)
| ..+|+.|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6 34555554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00018 Score=69.53 Aligned_cols=118 Identities=15% Similarity=0.116 Sum_probs=53.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCH--HHH
Q 003028 373 ARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI-HAKAGFL--DVA 449 (856)
Q Consensus 373 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~-~~k~g~~--~~A 449 (856)
.|++++|...|+...+.. +.+...|..+...|...|++++|...|++..... +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 344444544454444331 2244445555555555555555555555544432 2233444444444 4444554 555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003028 450 MDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 450 ~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~ 493 (856)
...|+++.+.. +.+...+..+...|...|++++|...|+...+
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555554432 22344444455555555555555555555444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00015 Score=76.51 Aligned_cols=96 Identities=9% Similarity=-0.039 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 431 VTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQ 510 (856)
Q Consensus 431 ~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~ 510 (856)
..+..+...+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|.+.++...+... -+...|..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 344455555555556666666555555542 22455555555566666666666666665554321 2445555666666
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 003028 511 AKARNYQSALKLYRDMQN 528 (856)
Q Consensus 511 ~~~g~~~~A~~ll~~M~~ 528 (856)
...|++++|+..|++..+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00014 Score=70.25 Aligned_cols=122 Identities=7% Similarity=0.109 Sum_probs=85.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCH--H
Q 003028 406 GRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINC-LGKAGHL--Q 482 (856)
Q Consensus 406 ~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~-y~k~g~~--~ 482 (856)
...|++++|+..|++..... +.+...|..+...|...|++++|...|++..+.. +.+...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34567777888887776654 4566777888888888888888888888877653 3356677777777 6677887 8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003028 483 AAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAG 530 (856)
Q Consensus 483 ~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g 530 (856)
+|...|+...+... .+...|..+...|...|++++|+..|+++.+..
T Consensus 99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888887776532 256677777778888888888888888777653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.78 E-value=9.9e-05 Score=77.98 Aligned_cols=98 Identities=8% Similarity=-0.070 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|...+++.++.. +-+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45566667777777778888888777776653 3366777777778888888888888888777652 345677777888
Q ss_pred HHHccCCHHHHHHHHHHHHH
Q 003028 474 CLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~ 493 (856)
+|...|++++|...|+...+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888877665
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.001 Score=58.30 Aligned_cols=58 Identities=9% Similarity=0.009 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQM 421 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m 421 (856)
+..+...+...|++++|...|+...... +.+...|..+...|...|++++|...+++.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 64 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3333344444444444444444433321 113333333333344444444444444333
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00042 Score=65.96 Aligned_cols=98 Identities=9% Similarity=-0.021 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI 439 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~ 439 (856)
...+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|++.|++..+.. +-+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3456666677777788888888887777652 2356777777777777788888888877777654 3456677777777
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 003028 440 HAKAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~ 459 (856)
|.+.|++++|...|++.++.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0014 Score=57.36 Aligned_cols=112 Identities=14% Similarity=0.036 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
....|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 34567788888999999999999999988764 4577888888899999999999999999988863 346788888999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 474 CLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIA 508 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~ 508 (856)
+|...|++++|.+.|+...+.... +...+..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 114 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQN 114 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 999999999999999998875322 4445544433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00095 Score=60.34 Aligned_cols=95 Identities=13% Similarity=0.012 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 537 TYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFL 616 (856)
Q Consensus 537 ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~ 616 (856)
.+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|...|++..+.. +.+...|..+..+|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34445555666666666666666666543 2345666777777777777777777777776542 335667777777777
Q ss_pred HcCCHHHHHHHHHHHHH
Q 003028 617 RVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 617 ~~g~~e~A~~l~~~M~~ 633 (856)
..|++++|+..|++.++
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 77777777777777765
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00055 Score=71.91 Aligned_cols=188 Identities=9% Similarity=-0.041 Sum_probs=104.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCC---------------
Q 003028 372 RARQFGAINKLLDQMVRDGCQPNVVTYNRL-------IHSYGRANYLNEALDVFKQMQVVGCEPD--------------- 429 (856)
Q Consensus 372 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~L-------i~~~~~~g~~~~A~~lf~~m~~~g~~pd--------------- 429 (856)
..++...|.+.|.+..+.. +-....|..+ ...+.+.++..+++..++.-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4566777777777766542 2245556555 2333333333344433333322 2221
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CH
Q 003028 430 -------RVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIP--NL 500 (856)
Q Consensus 430 -------~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~p--d~ 500 (856)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .| ..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1122344556667777777777777665543 333355555556777777777777776443321 11 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003028 501 VTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD--KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN 565 (856)
Q Consensus 501 ~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd--~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g 565 (856)
..+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3455566777777777777777777764332243 2234445555667777777777777777653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00047 Score=65.61 Aligned_cols=98 Identities=14% Similarity=0.049 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003028 395 VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINC 474 (856)
Q Consensus 395 ~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~ 474 (856)
...|..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|+..|++..+.. +-+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3455566666677777777777777776654 4456666666677777777777777777766653 2345566666666
Q ss_pred HHccCCHHHHHHHHHHHHHc
Q 003028 475 LGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 475 y~k~g~~~~A~~lf~~m~~~ 494 (856)
|.+.|++++|...|+...+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66677777777766666654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0027 Score=70.51 Aligned_cols=165 Identities=11% Similarity=0.077 Sum_probs=96.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHH----cCCCCC-HHH
Q 003028 433 YCTLIDIHAKAGFLDVAMDMYKKMQAAG-LSPDT----FTYSVIINCLGKAGHLQAAHQLFCEMVN----QGCIPN-LVT 502 (856)
Q Consensus 433 y~~Ll~~~~k~g~~~~A~~l~~~m~~~g-~~pd~----~ty~~Li~~y~k~g~~~~A~~lf~~m~~----~g~~pd-~~t 502 (856)
+..+...|.+.|++++|.+++..+...- ..++. .+.+.+-..+...|+++.|.+++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666666667766666666654320 01111 1222233334456677777777766543 222222 346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC-C-C--Hh
Q 003028 503 YNIMIALQAKARNYQSALKLYRDMQNA--GF--EPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRK--NWV-P-D--EP 571 (856)
Q Consensus 503 y~~Li~~~~~~g~~~~A~~ll~~M~~~--gi--~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~--g~~-p-d--~~ 571 (856)
+..|...|...|++++|..++.++... +. .+. ...+..++..|...|++++|..+++..... .+. | . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667778888888888888888776542 11 111 346667777777888888888887776542 111 1 1 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 572 VYGLLVDLWGKAGNVRKAWEWYEAML 597 (856)
Q Consensus 572 ~y~~Li~~~~k~g~~~~A~~l~~~m~ 597 (856)
.+..+...+...+++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45556666677788888877776654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0018 Score=59.55 Aligned_cols=98 Identities=11% Similarity=-0.036 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPN----VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYC 434 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd----~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~ 434 (856)
+...+..+...+...|++++|...|++..+. .|+ ...|..+..+|...|++++|++.|++..+.. +.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 5566777777888888888888888887764 455 5667777777788888888888887776653 33566677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 003028 435 TLIDIHAKAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 435 ~Ll~~~~k~g~~~~A~~l~~~m~~~ 459 (856)
.+..+|...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7777777777888887777777665
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00028 Score=66.71 Aligned_cols=87 Identities=8% Similarity=-0.061 Sum_probs=32.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003028 438 DIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQ 517 (856)
Q Consensus 438 ~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~ 517 (856)
..+.+.|++++|...|++.+... +.+...|..+..+|...|++++|...|++...... .+...|..+..+|...|+++
T Consensus 29 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 106 (148)
T 2vgx_A 29 FNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQXGELA 106 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHH
Confidence 33333344444444444333321 12333333333334444444444444443333211 12233333333444444444
Q ss_pred HHHHHHHHH
Q 003028 518 SALKLYRDM 526 (856)
Q Consensus 518 ~A~~ll~~M 526 (856)
+|+..|+..
T Consensus 107 ~A~~~~~~a 115 (148)
T 2vgx_A 107 EAESGLFLA 115 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0011 Score=59.86 Aligned_cols=92 Identities=8% Similarity=-0.021 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK 442 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k 442 (856)
|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3333344444444444444444443321 1233344444444444444444444444443332 2223333334444444
Q ss_pred cCCHHHHHHHHHHH
Q 003028 443 AGFLDVAMDMYKKM 456 (856)
Q Consensus 443 ~g~~~~A~~l~~~m 456 (856)
.|++++|...|++.
T Consensus 85 ~~~~~~A~~~~~~a 98 (126)
T 3upv_A 85 VKEYASALETLDAA 98 (126)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHH
Confidence 44444444444433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.001 Score=65.57 Aligned_cols=121 Identities=10% Similarity=0.029 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPN----------------VVTYNRLIHSYGRANYLNEALDVFKQMQVVG 425 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd----------------~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g 425 (856)
.+..+...+.+.|++++|...|++..+..- .+ ...|..+..+|.+.|++++|+..|++.....
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 455666677777888888888877775311 11 1455555556666666666666666655542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003028 426 CEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAH 485 (856)
Q Consensus 426 ~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~ 485 (856)
+.+...|..+..+|...|++++|.+.|++..+.. +-+..++..+..++...++.+++.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555566666666666665555442 224444555555554444444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00063 Score=60.96 Aligned_cols=58 Identities=10% Similarity=0.049 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQM 421 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m 421 (856)
|..+...+...|++++|...|+...+.. +.+...|..+...|...|++++|...|++.
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3344444444444444444444444321 123334444444444444444444444444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0023 Score=71.03 Aligned_cols=195 Identities=8% Similarity=-0.061 Sum_probs=133.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC----------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCH-
Q 003028 439 IHAKAGFLDVAMDMYKKMQAAGLSP----------------DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQG-CIPNL- 500 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~g~~p----------------d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g-~~pd~- 500 (856)
.+.+.|++++|++.|.++++..... ....+..|...|.+.|++++|.+++..+...- ..++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 3455566666666666665532110 01246778899999999999999998876431 11122
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC---C
Q 003028 501 ---VTYNIMIALQAKARNYQSALKLYRDMQN----AGFEPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRK--NW---V 567 (856)
Q Consensus 501 ---~ty~~Li~~~~~~g~~~~A~~ll~~M~~----~gi~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~--g~---~ 567 (856)
...+.+-..+...|++++|.+++..... .+..+. ..++..+...+...|++++|..+++++... +. .
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 1223333444457899999999987653 333333 456778889999999999999999987753 11 1
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 568 PDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA--GLRPN----VPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 568 pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~--g~~pd----~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
....++..++..|...|++++|..++++.... .+..+ ...+..+...+...|++++|...|.+..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12457888899999999999999999887632 12111 34567777788889999999998887764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00098 Score=65.74 Aligned_cols=151 Identities=13% Similarity=-0.027 Sum_probs=78.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---------------
Q 003028 366 MVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDR--------------- 430 (856)
Q Consensus 366 Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~--------------- 430 (856)
.+......|+++.+.+.++.-... .......|..+...+.+.|++++|++.|++..... +.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp ------------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHH
Confidence 333444455555555555422211 01134456667777888888888888888887642 1121
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 431 -VTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIAL 509 (856)
Q Consensus 431 -~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~ 509 (856)
..|..+..+|.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|.+.|++..+... -+...+..+...
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 165 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHH
Confidence 455566666666666666666666666542 23455566666666666666666666666554421 144455555555
Q ss_pred HHHcCCHHHHH
Q 003028 510 QAKARNYQSAL 520 (856)
Q Consensus 510 ~~~~g~~~~A~ 520 (856)
+...++.+++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 55555444444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00074 Score=60.48 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHH
Q 003028 395 VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGL--SPD----TFTY 468 (856)
Q Consensus 395 ~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~--~pd----~~ty 468 (856)
...|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++...... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3567778888889999999999999887764 45677888888889999999999999988876531 122 6778
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 469 SVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQA 511 (856)
Q Consensus 469 ~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~ 511 (856)
..+..+|...|++++|.+.|+...+.. |+...+..+.....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 888888999999999999999888753 46655555554443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00056 Score=59.49 Aligned_cols=90 Identities=11% Similarity=0.004 Sum_probs=35.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcc
Q 003028 401 LIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSP--DTFTYSVIINCLGKA 478 (856)
Q Consensus 401 Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~p--d~~ty~~Li~~y~k~ 478 (856)
+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|.+.|++..+.. +. +...+..+..+|.+.
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHH
Confidence 3333344444444444444433322 2223333334444444444444444444443321 11 233344444444444
Q ss_pred -CCHHHHHHHHHHHH
Q 003028 479 -GHLQAAHQLFCEMV 492 (856)
Q Consensus 479 -g~~~~A~~lf~~m~ 492 (856)
|++++|.+.|+...
T Consensus 90 ~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 90 EGKEVEAEIAEARAK 104 (112)
T ss_dssp SSCSHHHHHHHHHHG
T ss_pred hCCHHHHHHHHHHHh
Confidence 44444444444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0018 Score=59.03 Aligned_cols=98 Identities=10% Similarity=0.031 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLID 438 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~ 438 (856)
+...|..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 34455555555666666666666666555432 2244555555555555566666665555555443 234445555555
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 003028 439 IHAKAGFLDVAMDMYKKMQA 458 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~ 458 (856)
+|...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.001 Score=62.69 Aligned_cols=95 Identities=7% Similarity=-0.061 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
.+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|++.|++..... +.+...|..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 44455555666666666666666665532 2355556666666666666666666666665543 334455555566666
Q ss_pred HcCCHHHHHHHHHHHHH
Q 003028 442 KAGFLDVAMDMYKKMQA 458 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~ 458 (856)
..|++++|.+.|++.++
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0012 Score=61.38 Aligned_cols=96 Identities=11% Similarity=0.028 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
.+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|+..|++..... +.+...|..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34445555666666666666666666542 2355566666666666666666666666666543 334555556666666
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 003028 442 KAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~~ 459 (856)
..|++++|.+.|+..++.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666665543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0018 Score=59.04 Aligned_cols=98 Identities=8% Similarity=-0.070 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
+...|..+...+...|++++|+..|++..... +.+...|..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45555666666666666666666666655543 3345555555666666666666666666655542 224455555555
Q ss_pred HHHccCCHHHHHHHHHHHHH
Q 003028 474 CLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~ 493 (856)
+|...|++++|...|+...+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555666555555555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0021 Score=61.22 Aligned_cols=99 Identities=12% Similarity=0.053 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLID 438 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~ 438 (856)
+...|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567777788888888888888888887653 3367778888888888888888888888887764 445777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 003028 439 IHAKAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 439 ~~~k~g~~~~A~~l~~~m~~~ 459 (856)
+|...|++++|.+.|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888887765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.002 Score=61.28 Aligned_cols=99 Identities=7% Similarity=0.015 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
+...|..+...|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++.++.. +-+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567777888888888888888888887764 4467788888888888888888888888888763 335778888888
Q ss_pred HHHccCCHHHHHHHHHHHHHc
Q 003028 474 CLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 474 ~y~k~g~~~~A~~lf~~m~~~ 494 (856)
+|...|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888887764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.023 Score=61.09 Aligned_cols=54 Identities=9% Similarity=-0.037 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCCCCCCH
Q 003028 584 GNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRV-----------GQLSDAYHLLQGMLNLGLKPSL 640 (856)
Q Consensus 584 g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~-----------g~~e~A~~l~~~M~~~g~~Pd~ 640 (856)
+.++++.+.++...... +-|...|+.+-..+.+. +.++++++.++++++ +.||.
T Consensus 207 ~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~ 271 (331)
T 3dss_A 207 NVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPEN 271 (331)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCccc
Confidence 34567777777766542 44666666554444444 457788888888887 45664
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00067 Score=63.05 Aligned_cols=131 Identities=16% Similarity=0.117 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CC-CCHhh
Q 003028 503 YNIMIALQAKARNYQSALKLYRDMQNAGFE-PD----KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN----WV-PDEPV 572 (856)
Q Consensus 503 y~~Li~~~~~~g~~~~A~~ll~~M~~~gi~-pd----~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g----~~-pd~~~ 572 (856)
+..+...|...|++++|+..+++..+.... .+ ...+..+...+...|++++|...++...+.. .. ....+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444444555555555555444321100 01 1234444455555555555555555544321 00 01334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 573 YGLLVDLWGKAGNVRKAWEWYEAMLQA----GLR-PNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 573 y~~Li~~~~k~g~~~~A~~l~~~m~~~----g~~-pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+..+...|...|++++|...+++..+. +.. .....+..+...|...|++++|.+.+++.++
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 556666666777777777777665532 100 1134566777777788888888888777664
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0025 Score=58.53 Aligned_cols=98 Identities=17% Similarity=0.036 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD----RVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYS 469 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd----~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~ 469 (856)
+...|..+...+...|++++|++.|++..+. .|+ ...|..+..+|...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 5566677777777777777777777777654 344 4566666666677777777777777666542 22455666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc
Q 003028 470 VIINCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 470 ~Li~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
.+..+|...|++++|.+.|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666666666666666666553
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0014 Score=61.00 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG 476 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~ 476 (856)
.+..+...+.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|+..|++.+... +.+...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 33444455555566666666665555443 3344555555555555566666666555555542 223444555555555
Q ss_pred ccCCHHHHHHHHHHHHH
Q 003028 477 KAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~ 493 (856)
..|++++|.+.|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00089 Score=58.15 Aligned_cols=99 Identities=11% Similarity=-0.003 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEP--DRVTYCTLI 437 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p--d~~ty~~Ll 437 (856)
...|..+...+.+.|++++|...|+...+.. +.+...|..+...|...|++++|.+.|++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3467778888999999999999999988763 3467888899999999999999999999998764 33 578889999
Q ss_pred HHHHHc-CCHHHHHHHHHHHHHCC
Q 003028 438 DIHAKA-GFLDVAMDMYKKMQAAG 460 (856)
Q Consensus 438 ~~~~k~-g~~~~A~~l~~~m~~~g 460 (856)
.++.+. |++++|.+.+++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 999999 99999999999988764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00084 Score=62.37 Aligned_cols=96 Identities=13% Similarity=-0.010 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC-CCHH
Q 003028 432 TYCTLIDIHAKAGFLDVAMDMYKKMQAAGL-SPD----TFTYSVIINCLGKAGHLQAAHQLFCEMVNQ----GCI-PNLV 501 (856)
Q Consensus 432 ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~-~pd----~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~----g~~-pd~~ 501 (856)
++..+...+...|++++|.+.+++..+... ..+ ..++..+...|...|++++|.+.+++..+. +.. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 344444444445555555554444432100 000 223344444455555555555555444321 000 0122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 502 TYNIMIALQAKARNYQSALKLYRDMQ 527 (856)
Q Consensus 502 ty~~Li~~~~~~g~~~~A~~ll~~M~ 527 (856)
.+..+...|...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444455555555555555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0021 Score=58.67 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQ 422 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~ 422 (856)
++..+...+.+.|++++|...|++..+.. +-+...|+.+..+|.+.|++++|++.|++..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444444455555555554444431 1234444444444444444444444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0022 Score=58.60 Aligned_cols=101 Identities=11% Similarity=0.086 Sum_probs=49.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHHH
Q 003028 540 IVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAG--LRPN----VPTCNSLLS 613 (856)
Q Consensus 540 ~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g--~~pd----~~t~n~Li~ 613 (856)
.+-..+.+.|++++|...|++..+.. +-+...|..+..+|.+.|++++|...|++..+.. ..++ ..+|..+..
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 34444444445555555554444432 1234444555555555555555555555444311 0111 124555566
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003028 614 AFLRVGQLSDAYHLLQGMLNLGLKPSLQTY 643 (856)
Q Consensus 614 ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty 643 (856)
+|...|++++|++.|++.+. ..||..+.
T Consensus 92 ~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 119 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLS--EFRDPELV 119 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSCCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh--hCcCHHHH
Confidence 66666777777776666665 34554433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.052 Score=58.30 Aligned_cols=148 Identities=8% Similarity=0.067 Sum_probs=90.1
Q ss_pred HHHHHHHHH---HhcCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCC
Q 003028 362 TYTTMVGIL---GRARQFG-AINKLLDQMVRDGCQPNVVTYNRLIHSYGRANY----------LNEALDVFKQMQVVGCE 427 (856)
Q Consensus 362 ~y~~Li~~~---~k~g~~~-~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~----------~~~A~~lf~~m~~~g~~ 427 (856)
.|..+.+.+ .+.|.+. +|..+++.+...+ +-+...|+.--..+...+. +++++.+++.+.... +
T Consensus 28 ~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-P 105 (331)
T 3dss_A 28 LYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-P 105 (331)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-C
Confidence 455554433 3455554 7888888888743 2244556543333322222 567777777776654 4
Q ss_pred CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 428 PDRVTYCTLIDIHAKAG--FLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGH-LQAAHQLFCEMVNQGCIPNLVTYN 504 (856)
Q Consensus 428 pd~~ty~~Ll~~~~k~g--~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~-~~~A~~lf~~m~~~g~~pd~~ty~ 504 (856)
-+..+|+.-..++.+.+ .+++++.+++.+.+.. +-|-.+|+--...+...|. ++++.+.++.+.+..+. |...|+
T Consensus 106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~ 183 (331)
T 3dss_A 106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWH 183 (331)
T ss_dssp TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHH
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHH
Confidence 56667776666666666 3677777777777763 3466666666666666666 57777777777765443 666776
Q ss_pred HHHHHHHHc
Q 003028 505 IMIALQAKA 513 (856)
Q Consensus 505 ~Li~~~~~~ 513 (856)
.....+.+.
T Consensus 184 ~R~~ll~~l 192 (331)
T 3dss_A 184 YRSCLLPQL 192 (331)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 665555444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0029 Score=57.29 Aligned_cols=93 Identities=6% Similarity=-0.002 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003028 364 TTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKA 443 (856)
Q Consensus 364 ~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~ 443 (856)
..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+.. +-+...+..+..+|.+.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 344555666677777777777666542 2356666666666777777777777776666553 33455666666666666
Q ss_pred CCHHHHHHHHHHHHH
Q 003028 444 GFLDVAMDMYKKMQA 458 (856)
Q Consensus 444 g~~~~A~~l~~~m~~ 458 (856)
|++++|+..|++.++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777766666654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0077 Score=54.01 Aligned_cols=91 Identities=14% Similarity=0.005 Sum_probs=58.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 003028 541 VMEVLGHCGYLDEAEAVFAEMRRKNWVPDE---PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPN---VPTCNSLLSA 614 (856)
Q Consensus 541 ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~---~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd---~~t~n~Li~a 614 (856)
+...+...|++++|...|+.+.+.... +. ..+..+..+|.+.|++++|...|+...+.. +.+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 444555667777777777766654311 22 355666667777777777777777776542 122 5566677777
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 003028 615 FLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 615 y~~~g~~e~A~~l~~~M~~ 633 (856)
|...|++++|...|+++++
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777776
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.008 Score=53.90 Aligned_cols=92 Identities=11% Similarity=-0.033 Sum_probs=49.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 003028 366 MVGILGRARQFGAINKLLDQMVRDGCQPNV---VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD---RVTYCTLIDI 439 (856)
Q Consensus 366 Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~---~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd---~~ty~~Ll~~ 439 (856)
+...+.+.|++++|...|+.+.+.. +.+. ..+..+..+|.+.|++++|...|++..... +.+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 3445555666666666666665532 1112 345555555666666666666666655442 112 3445555555
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 003028 440 HAKAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~ 459 (856)
+.+.|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55666666666666655554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0031 Score=57.06 Aligned_cols=90 Identities=12% Similarity=-0.034 Sum_probs=43.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 003028 401 LIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGH 480 (856)
Q Consensus 401 Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~ 480 (856)
+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++.++.. +-+...+..+..+|...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3344445555555555555554432 2244444445555555555555555555554432 1234444444455555555
Q ss_pred HHHHHHHHHHHH
Q 003028 481 LQAAHQLFCEMV 492 (856)
Q Consensus 481 ~~~A~~lf~~m~ 492 (856)
+++|...|++..
T Consensus 101 ~~~A~~~~~~al 112 (121)
T 1hxi_A 101 ANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.004 Score=70.54 Aligned_cols=138 Identities=9% Similarity=-0.098 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI 439 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~ 439 (856)
...|..+...|.+.|++++|...|++..+.. |+...+ ..+...+ ... .....|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~-~~~-------~~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKESKA-SES-------FLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHHHH-HHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHHHH-HHH-------HHHHHHHHHHHH
Confidence 4567777777888888888888888776531 221000 0000000 000 012344444455
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSA 519 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A 519 (856)
|.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|...|++..+... -+...|..+..++.+.++.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554432 22444455555555555555555555555544321 1333444455555555554444
Q ss_pred H
Q 003028 520 L 520 (856)
Q Consensus 520 ~ 520 (856)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0051 Score=69.65 Aligned_cols=128 Identities=8% Similarity=-0.026 Sum_probs=71.2
Q ss_pred HHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003028 334 LKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNE 413 (856)
Q Consensus 334 L~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~ 413 (856)
+...+++..|+..|....+.....++. .-+...+ +.. .....|..+..+|.+.|++++
T Consensus 278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~--------------~~~~~~~----~~~----~~~~~~~nla~~~~~~g~~~~ 335 (457)
T 1kt0_A 278 YFKGGKYMQAVIQYGKIVSWLEMEYGL--------------SEKESKA----SES----FLLAAFLNLAMCYLKLREYTK 335 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCCSC--------------CHHHHHH----HHH----HHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhcccccC--------------ChHHHHH----HHH----HHHHHHHHHHHHHHHhcCHHH
Confidence 334579999999999887643322220 0001000 110 123445666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003028 414 ALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAH 485 (856)
Q Consensus 414 A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~ 485 (856)
|+..|++..+.. +.+...|..+..+|...|++++|+..|++.++.. +-+...+..+..++.+.++.+++.
T Consensus 336 A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 336 AVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666543 3355666666666666777777777776666542 223445555666666666665554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0014 Score=74.90 Aligned_cols=118 Identities=11% Similarity=0.023 Sum_probs=69.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003028 404 SYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQA 483 (856)
Q Consensus 404 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~ 483 (856)
.|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|++.+++..+.. +.+..+|..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3455666666666666665543 3345666666666667777777777777666652 2355666666677777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 003028 484 AHQLFCEMVNQGCIPNLVTYNIMIAL--QAKARNYQSALKLYR 524 (856)
Q Consensus 484 A~~lf~~m~~~g~~pd~~ty~~Li~~--~~~~g~~~~A~~ll~ 524 (856)
|.+.|++..+.... +...+..+..+ +.+.|++++|+++++
T Consensus 93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777766654211 23344444433 666677777777766
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0058 Score=57.86 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=59.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 003028 569 DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQ-TYTLLL 647 (856)
Q Consensus 569 d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~-ty~~Ll 647 (856)
+..+|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|+..|++.++ +.|+.. .....+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l 138 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREM 138 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHH
Confidence 34577888888889999999999998888753 45678888899999999999999999998887 456654 444333
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0013 Score=58.89 Aligned_cols=85 Identities=13% Similarity=0.044 Sum_probs=58.5
Q ss_pred cCChHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 548 CGYLDEAEAVFAEMRRKN--WVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAY 625 (856)
Q Consensus 548 ~g~~~~A~~l~~~m~~~g--~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~ 625 (856)
.|++++|...|++..+.+ -+.+...+..+...|.+.|++++|...|++..+.. +-+...+..+..+|...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 467777777777777643 12245567777777788888888888888877653 345677777888888888888888
Q ss_pred HHHHHHHH
Q 003028 626 HLLQGMLN 633 (856)
Q Consensus 626 ~l~~~M~~ 633 (856)
..|++.++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887776
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0066 Score=66.68 Aligned_cols=138 Identities=7% Similarity=-0.053 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 360 EHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDI 439 (856)
Q Consensus 360 ~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~ 439 (856)
...|..+...+.+.|++++|...|++..+. .+.. ......+++.+ . -+.+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~~~~~-------~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADGAK-------L-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHHGG-------G-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChHHHHH-------H-HHHHHHHHHHHHHH
Confidence 456777788888888888888888777651 0000 00000000000 0 01123445555555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSA 519 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A 519 (856)
|.+.|++++|++.+++.++.. +.+...|..+..+|...|++++|.+.|++..+... -+...+..+...+...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555432 22445555555555555555555555555544321 1334444444444444444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0062 Score=66.95 Aligned_cols=91 Identities=10% Similarity=-0.016 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|++++|++.|++..+.. +-+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34566777777777777777777777777653 3356677777777777778888877777777652 235566666666
Q ss_pred HHHccCCHHHHHH
Q 003028 474 CLGKAGHLQAAHQ 486 (856)
Q Consensus 474 ~y~k~g~~~~A~~ 486 (856)
++.+.++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0015 Score=58.40 Aligned_cols=85 Identities=9% Similarity=0.003 Sum_probs=40.5
Q ss_pred cCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003028 373 ARQFGAINKLLDQMVRDG--CQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAM 450 (856)
Q Consensus 373 ~g~~~~A~~lf~~m~~~g--~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~ 450 (856)
.|++++|...|++..+.+ -+.+...|..+..+|.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 344555555555555432 01123344555555555555555555555555443 233445555555555555555555
Q ss_pred HHHHHHHH
Q 003028 451 DMYKKMQA 458 (856)
Q Consensus 451 ~l~~~m~~ 458 (856)
..|++.++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0019 Score=73.61 Aligned_cols=121 Identities=14% Similarity=0.073 Sum_probs=89.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003028 366 MVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF 445 (856)
Q Consensus 366 Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~ 445 (856)
+...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3445567888999999998888752 3357888888899999999999999999888764 4567788888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCCHHHHHHHHH
Q 003028 446 LDVAMDMYKKMQAAGLSPDTFTYSVIINC--LGKAGHLQAAHQLFC 489 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g~~pd~~ty~~Li~~--y~k~g~~~~A~~lf~ 489 (856)
+++|++.|++..+... -+...+..+..+ +.+.|++++|.++++
T Consensus 90 ~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999998887632 233444444444 778888999988887
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.015 Score=54.92 Aligned_cols=62 Identities=11% Similarity=-0.001 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003028 431 VTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 431 ~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~ 493 (856)
..|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+....
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 344445555555555555555555555442 22344555555555555555555555555444
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.016 Score=53.60 Aligned_cols=111 Identities=15% Similarity=0.119 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHH
Q 003028 514 RNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGK----AGNVRKA 589 (856)
Q Consensus 514 g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k----~g~~~~A 589 (856)
+++++|++.|++..+.| .++.. |-..|...+..++|.+.|+...+.| +...+..|-..|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35566777777766665 23322 4444555566666777777776654 45666666666766 6777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 003028 590 WEWYEAMLQAGLRPNVPTCNSLLSAFLR----VGQLSDAYHLLQGMLNLG 635 (856)
Q Consensus 590 ~~l~~~m~~~g~~pd~~t~n~Li~ay~~----~g~~e~A~~l~~~M~~~g 635 (856)
.++|++..+.| +...+..|...|.. .++.++|++.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777777654 56667777777777 677777777777777655
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0036 Score=67.85 Aligned_cols=146 Identities=9% Similarity=0.009 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
.+..+...+.+.|++++|...|+..... .|+... +...++.+++...+. ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3556666677777888888877776653 233321 112222333322211 125566666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCHHHHH
Q 003028 442 KAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIAL-QAKARNYQSAL 520 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~-~~~~g~~~~A~ 520 (856)
+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+.... +...+..|... ....+..+++.
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666642 235666666667777777777777777666543211 33344444433 22345556666
Q ss_pred HHHHHHHH
Q 003028 521 KLYRDMQN 528 (856)
Q Consensus 521 ~ll~~M~~ 528 (856)
.+|..|..
T Consensus 320 ~~~~~~l~ 327 (338)
T 2if4_A 320 EMYKGIFK 327 (338)
T ss_dssp --------
T ss_pred HHHHHhhC
Confidence 66666654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.006 Score=69.56 Aligned_cols=124 Identities=12% Similarity=0.017 Sum_probs=70.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CC-CHHHHHH
Q 003028 370 LGRARQFGAINKLLDQMVRDG---CQP----NVVTYNRLIHSYGRANYLNEALDVFKQMQVV-----GC-EP-DRVTYCT 435 (856)
Q Consensus 370 ~~k~g~~~~A~~lf~~m~~~g---~~p----d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~-----g~-~p-d~~ty~~ 435 (856)
+...|++++|+.++++..+.. +.+ ...+++.|...|...|++++|+.++++..+. |- .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 446778888888777665421 112 2346777777777778877777777766431 21 11 2345667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003028 436 LIDIHAKAGFLDVAMDMYKKMQAA-----GLS-PD-TFTYSVIINCLGKAGHLQAAHQLFCEMVN 493 (856)
Q Consensus 436 Ll~~~~k~g~~~~A~~l~~~m~~~-----g~~-pd-~~ty~~Li~~y~k~g~~~~A~~lf~~m~~ 493 (856)
|...|...|++++|+.+|++..+. |.. |+ ..+.+.|-.++...+.+++|+.+|..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777665432 211 11 22233334444455555555555555543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.012 Score=67.15 Aligned_cols=133 Identities=8% Similarity=-0.082 Sum_probs=96.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCCCH-HHHH
Q 003028 579 LWGKAGNVRKAWEWYEAMLQA---GLRP----NVPTCNSLLSAFLRVGQLSDAYHLLQGMLN-----LG-LKPSL-QTYT 644 (856)
Q Consensus 579 ~~~k~g~~~~A~~l~~~m~~~---g~~p----d~~t~n~Li~ay~~~g~~e~A~~l~~~M~~-----~g-~~Pd~-~ty~ 644 (856)
.+...|++++|+.++++..+. -+.+ ...+++.|...|...|++++|+.++++.++ .| -.|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999988887642 1222 246789999999999999999999988775 12 22333 6778
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCC
Q 003028 645 LLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSG 724 (856)
Q Consensus 645 ~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G 724 (856)
.|-..|...|++++|+.++++. ..+++.....+......+.+.|..++...|
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~A----------------------------l~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKA----------------------------YAILLVTHGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH----------------------------HHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH----------------------------HHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 8888899999999988766443 233333333333334556778888999999
Q ss_pred ChhHHHHHHHHHHhC
Q 003028 725 LKEEAGSVWEVAAQK 739 (856)
Q Consensus 725 ~~eeA~~lf~~m~~~ 739 (856)
++++|..++.++.+.
T Consensus 450 ~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 450 MFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.005 Score=66.68 Aligned_cols=146 Identities=14% Similarity=0.031 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG 476 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~ 476 (856)
.|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3556677788999999999999998764 344332 222333344332221 137888899999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HHhcCChHHH
Q 003028 477 KAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD-KVTYSIVMEV-LGHCGYLDEA 554 (856)
Q Consensus 477 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd-~~ty~~ll~a-~~~~g~~~~A 554 (856)
+.|++++|...|+...+... .+...|..+..+|...|++++|+..|++..+. .|+ ...+..+... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887632 36789999999999999999999999988654 344 3344444443 2345677888
Q ss_pred HHHHHHHHHc
Q 003028 555 EAVFAEMRRK 564 (856)
Q Consensus 555 ~~l~~~m~~~ 564 (856)
..+|..|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8899888764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.026 Score=53.69 Aligned_cols=95 Identities=11% Similarity=-0.037 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPN--------V-----VTYNRLIHSYGRANYLNEALDVFKQMQVV---- 424 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd--------~-----~ty~~Li~~~~~~g~~~~A~~lf~~m~~~---- 424 (856)
.+......+.+.|++++|...|+...+. .|+ . ..|+.+-.++.+.|++++|+..|++..+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3455556666777777777777777653 233 2 25666666666666666666666666553
Q ss_pred -CCCC-CHHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 425 -GCEP-DRVTY----CTLIDIHAKAGFLDVAMDMYKKMQA 458 (856)
Q Consensus 425 -g~~p-d~~ty----~~Ll~~~~k~g~~~~A~~l~~~m~~ 458 (856)
.+.| +...| ...-.++...|++++|+..|++.++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0123 23344 5555555566666666666655543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.097 Score=60.79 Aligned_cols=172 Identities=9% Similarity=0.049 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-
Q 003028 376 FGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANY----------LNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAG- 444 (856)
Q Consensus 376 ~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~----------~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g- 444 (856)
-++|.+.++.+.... +-+...|+.--.++...++ +++++++++++.+.. +-+..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 355666666666542 2244555554444444444 677777777776654 445666666666666677
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---------
Q 003028 445 -FLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAG-HLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKA--------- 513 (856)
Q Consensus 445 -~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g-~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~--------- 513 (856)
+++++++.++++.+.. +-+-.+|+--...+.+.| .++++.+.++++.+..+. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 5577777777777764 336666766666666666 677777777777765443 667777666665553
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 003028 514 -----RNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLD 552 (856)
Q Consensus 514 -----g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~ 552 (856)
+.++++++.+++..... +-|...|..+-..+.+.++.+
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 45678888888777653 224556666666666665533
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.081 Score=50.27 Aligned_cols=62 Identities=13% Similarity=0.042 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 572 VYGLLVDLWGKAGNVRKAWEWYEAMLQA-----GLRPN-VPTC----NSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 572 ~y~~Li~~~~k~g~~~~A~~l~~~m~~~-----g~~pd-~~t~----n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....+|...|++++|+..|++.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777777777777777777777777663 11454 4567 7888888889999999998888875
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.15 Score=59.14 Aligned_cols=135 Identities=8% Similarity=0.047 Sum_probs=92.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 003028 409 NYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF----------LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKA 478 (856)
Q Consensus 409 g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~----------~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~ 478 (856)
...++|++.++++.... +-+...|+.--.++.+.|+ ++++++.++++.+.. +-+..+|+.-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34567888888887764 3445567666666666666 788888888887763 34667777766777777
Q ss_pred C--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003028 479 G--HLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKAR-NYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGH 547 (856)
Q Consensus 479 g--~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g-~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~ 547 (856)
+ +++++.+.++.+.+.... +..+|+.-...+.+.| .++++++.++++.+..+ -|...|+.....+.+
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQ 190 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHh
Confidence 7 668888888888776443 6777777777777777 77778887777766532 245566655555444
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.082 Score=48.74 Aligned_cols=14 Identities=29% Similarity=0.164 Sum_probs=5.5
Q ss_pred CCHHHHHHHHHHHH
Q 003028 444 GFLDVAMDMYKKMQ 457 (856)
Q Consensus 444 g~~~~A~~l~~~m~ 457 (856)
+++++|++.|++..
T Consensus 75 ~d~~~A~~~~~~Aa 88 (138)
T 1klx_A 75 KDLRKAAQYYSKAC 88 (138)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 33333333333333
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.022 Score=49.28 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=51.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003028 569 DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS 639 (856)
Q Consensus 569 d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd 639 (856)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|++.|++.++ +.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCC
Confidence 34566677777888888888888888877652 44677788888888888888888888888886 3454
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0034 Score=54.67 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQ 422 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~ 422 (856)
.|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|++.|++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33444444444444444444444444321 1233344444444444444444444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.052 Score=44.92 Aligned_cols=58 Identities=9% Similarity=0.193 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQM 421 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m 421 (856)
|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|.+.|++.
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333334444444444444444433321 112333333333344444444444444333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.035 Score=48.88 Aligned_cols=79 Identities=11% Similarity=0.009 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 553 EAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGML 632 (856)
Q Consensus 553 ~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~ 632 (856)
+|...|+...+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++.+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666543 2356677777778888888888888888877653 3456777888888888888888888888776
Q ss_pred H
Q 003028 633 N 633 (856)
Q Consensus 633 ~ 633 (856)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.23 Score=59.65 Aligned_cols=99 Identities=13% Similarity=0.181 Sum_probs=51.0
Q ss_pred HHhcCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 370 LGRARQFGAINK-LLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDV 448 (856)
Q Consensus 370 ~~k~g~~~~A~~-lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~ 448 (856)
....+++++|.+ ++..+ ++......++..+.+.|.+++|+++.+... .-+......|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHH
Confidence 345667777665 44111 112223556666666777777666553211 11233445566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003028 449 AMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMV 492 (856)
Q Consensus 449 A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~ 492 (856)
|.++.+.+ .+...|..|...+.+.|+++.|++.|..+.
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 66654332 245556666666666666666655555543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.07 Score=44.10 Aligned_cols=84 Identities=17% Similarity=0.219 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003028 394 NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIIN 473 (856)
Q Consensus 394 d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~ 473 (856)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 35677888889999999999999999988764 4567888899999999999999999999998863 346777777777
Q ss_pred HHHccC
Q 003028 474 CLGKAG 479 (856)
Q Consensus 474 ~y~k~g 479 (856)
++.+.|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 766543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.037 Score=48.72 Aligned_cols=61 Identities=13% Similarity=0.038 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 395 VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKM 456 (856)
Q Consensus 395 ~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m 456 (856)
...|..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++.
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3334444444444444444444444443332 222333344444444444444444444433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.24 Score=59.62 Aligned_cols=153 Identities=10% Similarity=0.176 Sum_probs=100.5
Q ss_pred HHHhcCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 003028 404 SYGRANYLNEALD-VFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQ 482 (856)
Q Consensus 404 ~~~~~g~~~~A~~-lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~ 482 (856)
.....+++++|.+ ++..+ ++......++..+.+.|.+++|+++.++-. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence 3345788888877 55221 112233677788888899998887764221 1134456789999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003028 483 AAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMR 562 (856)
Q Consensus 483 ~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~ 562 (856)
+|.++.+.+ .+...|..|...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++-+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 998886554 3678899999999999999999999988753 3455555666777776666655555
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003028 563 RKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEA 595 (856)
Q Consensus 563 ~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~ 595 (856)
..| -++....+|.+.|++++|.+++.+
T Consensus 735 ~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 735 TTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 543 234445556666666666665443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.05 Score=46.87 Aligned_cols=64 Identities=19% Similarity=0.147 Sum_probs=47.7
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 569 DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 569 d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+...+..+...|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|++.|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667777777888888888888888877653 33566777788888888888888888877765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.032 Score=52.96 Aligned_cols=99 Identities=11% Similarity=0.070 Sum_probs=63.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003028 549 GYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGN----------VRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRV 618 (856)
Q Consensus 549 g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~----------~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~ 618 (856)
+.+++|.+.++...+.. +-+...|..+-.++...++ +++|...|++..+.. +.+...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 33445555555544433 2244444444444444443 568888888887743 33567788888888776
Q ss_pred C-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003028 619 G-----------QLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCT 651 (856)
Q Consensus 619 g-----------~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~ 651 (856)
| ++++|++.|++.++ +.|+...|...+..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 4 89999999999987 6788887777766553
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.079 Score=45.59 Aligned_cols=60 Identities=20% Similarity=0.174 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 396 VTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKM 456 (856)
Q Consensus 396 ~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m 456 (856)
..|..+...|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.|++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444444443332 222333444444444444444444444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.064 Score=50.91 Aligned_cols=72 Identities=10% Similarity=-0.035 Sum_probs=35.3
Q ss_pred HHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 334 LKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFG----------AINKLLDQMVRDGCQPNVVTYNRLIH 403 (856)
Q Consensus 334 L~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~----------~A~~lf~~m~~~g~~pd~~ty~~Li~ 403 (856)
..+++.++.|++.++...+..+ .+...|..+..++...++++ +|...|++..+.. +-+...|..+-.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P--~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ 88 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNP--LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 3445556666666666654322 24455555555665555433 4555555444431 113344444444
Q ss_pred HHHhc
Q 003028 404 SYGRA 408 (856)
Q Consensus 404 ~~~~~ 408 (856)
+|...
T Consensus 89 ay~~l 93 (158)
T 1zu2_A 89 AYTSF 93 (158)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.48 Score=51.24 Aligned_cols=76 Identities=12% Similarity=0.040 Sum_probs=63.6
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003028 567 VPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLL 646 (856)
Q Consensus 567 ~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~L 646 (856)
..+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|.+... +.|...||...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 4577788888777777899999999999999864 8888888888889999999999999999887 67888776544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.15 Score=57.02 Aligned_cols=92 Identities=14% Similarity=0.064 Sum_probs=68.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC---CCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHH
Q 003028 542 MEVLGHCGYLDEAEAVFAEMRRKN---WVP----DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA-----G-LRP-NVPT 607 (856)
Q Consensus 542 l~a~~~~g~~~~A~~l~~~m~~~g---~~p----d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~-----g-~~p-d~~t 607 (856)
+..+...|++++|+.++++..+.. +.+ ...+++.|...|...|++++|+.++++..+. | ..| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556788888888888887531 111 2457888888899999999999988877642 1 112 2457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 608 CNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 608 ~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
++.|...|...|++++|+.++++.++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999988764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.081 Score=59.18 Aligned_cols=87 Identities=8% Similarity=0.011 Sum_probs=63.6
Q ss_pred hcCChHHHHHHHHHHHHc--C-CCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHH
Q 003028 547 HCGYLDEAEAVFAEMRRK--N-WVP----DEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA-----G-LRPN-VPTCNSLL 612 (856)
Q Consensus 547 ~~g~~~~A~~l~~~m~~~--g-~~p----d~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~-----g-~~pd-~~t~n~Li 612 (856)
..|++++|+.++++..+. . +-| ...+++.|..+|...|++++|+.++++..+. | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 347788888888876652 1 111 2467888888898999999999888887641 2 1222 45688899
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 003028 613 SAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 613 ~ay~~~g~~e~A~~l~~~M~~ 633 (856)
..|...|++++|+.++++.++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.2 Score=55.99 Aligned_cols=94 Identities=6% Similarity=-0.119 Sum_probs=69.1
Q ss_pred HcCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCCCCccc
Q 003028 617 RVGQLSDAYHLLQGMLN---LGLKPS----LQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQN 689 (856)
Q Consensus 617 ~~g~~e~A~~l~~~M~~---~g~~Pd----~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~ 689 (856)
..|++++|+.++++.++ .-+.|+ ..+++.|..+|...|++++|+.+++...
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL---------------------- 367 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII---------------------- 367 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH----------------------
Confidence 35789999999988775 223444 3678888899999999999988765543
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 003028 690 VRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQ 738 (856)
Q Consensus 690 ~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~ 738 (856)
.+.+.....+.......++.|...|..+|++++|+.++++..+
T Consensus 368 ------~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 368 ------KPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp ------HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 2233333233333456789999999999999999999998764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.36 Score=53.89 Aligned_cols=99 Identities=10% Similarity=0.061 Sum_probs=73.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCC
Q 003028 612 LSAFLRVGQLSDAYHLLQGMLNL---GLKPS----LQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPG 684 (856)
Q Consensus 612 i~ay~~~g~~e~A~~l~~~M~~~---g~~Pd----~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~ 684 (856)
+..+.+.|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|+.++++..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L----------------- 356 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM----------------- 356 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-----------------
Confidence 45567889999999999999862 23344 3678888889999999999988765543
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 003028 685 PDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQ 738 (856)
Q Consensus 685 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~ 738 (856)
.+.+.............++.|...|...|++++|+.++++..+
T Consensus 357 -----------~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 357 -----------EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp -----------HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------HhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2233333222333456788999999999999999999998764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=94.22 E-value=0.67 Score=50.14 Aligned_cols=74 Identities=12% Similarity=0.071 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 462 SPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYS 539 (856)
Q Consensus 462 ~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~ 539 (856)
+.+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|++.... .|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5577777777777777788888888888887764 67777777777788888888888888877764 45555654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.15 E-value=2.3 Score=40.81 Aligned_cols=131 Identities=11% Similarity=0.083 Sum_probs=85.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003028 366 MVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF 445 (856)
Q Consensus 366 Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~ 445 (856)
-.+.....|+++.|.++.+++ .+...|..|-......|+++-|.+.|++... +..+.-.|.-.|+
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence 445567788888888887665 3677888888888888888888888888753 4455566667788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 446 LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRD 525 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 525 (856)
.+...++-+.....| -++.....+.-.|+++++.++|.+.-. .|.. +......|..+.|.++..+
T Consensus 76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHHH
Confidence 777776666555543 245555566667888888877754322 1111 1111225566666666655
Q ss_pred H
Q 003028 526 M 526 (856)
Q Consensus 526 M 526 (856)
+
T Consensus 141 ~ 141 (177)
T 3mkq_B 141 A 141 (177)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.27 E-value=3 Score=40.04 Aligned_cols=99 Identities=11% Similarity=0.094 Sum_probs=43.9
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003028 476 GKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAE 555 (856)
Q Consensus 476 ~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~ 555 (856)
..+|+++.|.++.+.+ -+...|..|-......|+++-|.+.|....+ |..+.-.|...|+.+...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3445555555544443 1344455555555555555555555544331 222333333444444444
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003028 556 AVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEA 595 (856)
Q Consensus 556 ~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~ 595 (856)
++-+.....| -++.....+...|+++++.++|.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3333333322 134444444445555555555433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.45 Score=39.99 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQ 422 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~ 422 (856)
.|..+..+|...|++++|++.|++..
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333344444444444444444433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=92.76 E-value=0.29 Score=41.23 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=39.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003028 402 IHSYGRANYLNEALDVFKQMQVVGCEPDRV-TYCTLIDIHAKAGFLDVAMDMYKKMQAAG 460 (856)
Q Consensus 402 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~-ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g 460 (856)
...+.+.|++++|++.|++..+.. +.+.. .|..+..+|...|++++|.+.|++.++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345566777777777777776653 33455 67777777777777777777777777653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.91 E-value=1.3 Score=41.58 Aligned_cols=86 Identities=16% Similarity=0.138 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 003028 551 LDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAG---NVRKAWEWYEAMLQAGLRP--NVPTCNSLLSAFLRVGQLSDAY 625 (856)
Q Consensus 551 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g---~~~~A~~l~~~m~~~g~~p--d~~t~n~Li~ay~~~g~~e~A~ 625 (856)
+..+++-|.+..+.+. ++..+...+..++++.+ +++++..+|+++.+.. .| +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4556666666666554 67888888888888888 6668999999888754 23 3556667778889999999999
Q ss_pred HHHHHHHHCCCCCCH
Q 003028 626 HLLQGMLNLGLKPSL 640 (856)
Q Consensus 626 ~l~~~M~~~g~~Pd~ 640 (856)
+.++.+++ +.|+.
T Consensus 92 ~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHh--cCCCC
Confidence 99999987 56764
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=91.33 E-value=7.1 Score=35.61 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003028 537 TYSIVMEVLGHCGYLDEAEAVFAEMRRKN 565 (856)
Q Consensus 537 ty~~ll~a~~~~g~~~~A~~l~~~m~~~g 565 (856)
....+..+|.+.|+..++.+++.+..+.|
T Consensus 127 ~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 127 ILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33333444444444444444444444333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=90.62 E-value=1.8 Score=37.21 Aligned_cols=69 Identities=20% Similarity=0.151 Sum_probs=44.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003028 570 EPVYGLLVDLWGKAGNVRKAWEWYEAMLQAG------LRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL 640 (856)
Q Consensus 570 ~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g------~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~ 640 (856)
..-+..|...+.+.++++.|...|+...+.- -.+....+..|..+|.+.|++++|+.++++.++ +.|+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 3445556666667777777777776655421 123456677777777778888888877777776 45554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=90.29 E-value=8.4 Score=35.14 Aligned_cols=137 Identities=10% Similarity=0.014 Sum_probs=60.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 373 ARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDM 452 (856)
Q Consensus 373 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l 452 (856)
.|.+++..++..+.... -+..-||.+|.-....-+-+-..++++.+-+. .|.. ..|++..+...
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHHHH
Confidence 35555555655555542 34555555555544444444444444444221 1111 12233333322
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003028 453 YKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGF 531 (856)
Q Consensus 453 ~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi 531 (856)
+-.+ ..+....+..++.+...|+-|.-.+++..+.. +.+|+....-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 84 ~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 2221 11233344444555555555555555555322 1233444444555555555555555555555555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=90.22 E-value=1.5 Score=37.24 Aligned_cols=65 Identities=9% Similarity=-0.065 Sum_probs=40.6
Q ss_pred CHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003028 569 DEPVYGLLVDLWGKAGN---VRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNL 634 (856)
Q Consensus 569 d~~~y~~Li~~~~k~g~---~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~ 634 (856)
+...+..+..++...++ .++|..+|++..... +-++..+..+...+.+.|++++|+..|+++++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44555555555543333 567777777766542 345566666667777777777777777777763
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=88.20 E-value=3 Score=35.32 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=7.1
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 003028 403 HSYGRANYLNEALDVFKQM 421 (856)
Q Consensus 403 ~~~~~~g~~~~A~~lf~~m 421 (856)
..+.+.|++++|+..|+++
T Consensus 51 ~~~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 51 NDHFISFRFQEAIDTWVLL 69 (93)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 3333333333333333333
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=87.75 E-value=4.9 Score=41.83 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCH
Q 003028 376 FGAINKLLDQMVRDGCQPN---VVTYNRLIHSYGR-----ANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKA-GFL 446 (856)
Q Consensus 376 ~~~A~~lf~~m~~~g~~pd---~~ty~~Li~~~~~-----~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~-g~~ 446 (856)
...|..++++..+. .|+ -..|..|...|.+ -|+.++|.++|++..+..-.-+..++..+...++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34566666666653 455 4467777777777 378888888888877764222466777777777774 778
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHH
Q 003028 447 DVAMDMYKKMQAAGLS--PDTFTYSV 470 (856)
Q Consensus 447 ~~A~~l~~~m~~~g~~--pd~~ty~~ 470 (856)
+++.+.+++.+..... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888887776554 55444443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=87.53 E-value=5.1 Score=34.28 Aligned_cols=66 Identities=12% Similarity=0.067 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDG------CQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVV 424 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g------~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~ 424 (856)
+...+-.|...+.+.+++..|...|+...+.- -.+....+..|..+|.+.|++++|+.++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455566666666777777766666655421 0123455666666666666666666666666553
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.17 E-value=4.9 Score=37.55 Aligned_cols=80 Identities=10% Similarity=0.059 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 003028 378 AINKLLDQMVRDGCQPNVVTYNRLIHSYGRAN---YLNEALDVFKQMQVVGCEP--DRVTYCTLIDIHAKAGFLDVAMDM 452 (856)
Q Consensus 378 ~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g---~~~~A~~lf~~m~~~g~~p--d~~ty~~Ll~~~~k~g~~~~A~~l 452 (856)
.+++-|.+....+. ++..+.-.+..++++.+ ++++++.+|++..+.. .| ....+-.|.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444444444332 45555555555666655 4446666666655543 12 233344444455666666666666
Q ss_pred HHHHHHC
Q 003028 453 YKKMQAA 459 (856)
Q Consensus 453 ~~~m~~~ 459 (856)
++.+++.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6666553
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=83.59 E-value=9.4 Score=39.67 Aligned_cols=123 Identities=11% Similarity=0.014 Sum_probs=86.7
Q ss_pred HHHHHHHHH-HHHhc--C------CHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHH
Q 003028 395 VVTYNRLIH-SYGRA--N------YLNEALDVFKQMQVVGCEPD---RVTYCTLIDIHAKA-----GFLDVAMDMYKKMQ 457 (856)
Q Consensus 395 ~~ty~~Li~-~~~~~--g------~~~~A~~lf~~m~~~g~~pd---~~ty~~Ll~~~~k~-----g~~~~A~~l~~~m~ 457 (856)
...|..++. .++.. | ....|..++++..+. .|+ -..|..+...|.+. |+.++|.+.|++.+
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL 231 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT 231 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH
Confidence 445666554 34443 3 246777777777765 455 56888899999984 99999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003028 458 AAGLSPDTFTYSVIINCLGKA-GHLQAAHQLFCEMVNQGCI--PNLVTYNIMIALQAKARNYQSALKLYRDMQ 527 (856)
Q Consensus 458 ~~g~~pd~~ty~~Li~~y~k~-g~~~~A~~lf~~m~~~g~~--pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 527 (856)
+....-+..++......++.. |+.+++.+.+++....... |+....|.+-. .+|..++.++.
T Consensus 232 ~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q--------~eA~~LL~~~~ 296 (301)
T 3u64_A 232 RYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQ--------KRARWLKAHVQ 296 (301)
T ss_dssp HHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHH--------HHHHHHHHTHH
T ss_pred HhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHH--------HHHHHHHHHhH
Confidence 864322478888888888885 9999999999999987655 66555554432 35555555443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=81.71 E-value=15 Score=34.11 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003028 479 GHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEP 533 (856)
Q Consensus 479 g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~p 533 (856)
+++++|.++|+.+.+.+-.. ...|......-.+.|+...|.+++......+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56666666666665442222 4455555555556666666666666666555443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.44 E-value=44 Score=36.88 Aligned_cols=95 Identities=16% Similarity=0.119 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC--HHH
Q 003028 539 SIVMEVLGHCGYLDEAEAVFAEMRRK--NWVPD---EPVYGLLVDLWGKAGNVRKAWEWYEAMLQ----AGLRPN--VPT 607 (856)
Q Consensus 539 ~~ll~a~~~~g~~~~A~~l~~~m~~~--g~~pd---~~~y~~Li~~~~k~g~~~~A~~l~~~m~~----~g~~pd--~~t 607 (856)
..|...+...|++.+|..++..+... +.... ...|...+..|...+++..|..++.+... ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34556666777777777777776532 21111 34566667778888888888888877642 111222 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 608 CNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 608 ~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
+..++..+...+++.+|...|.+..+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 66677777788888888887777654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=80.67 E-value=6.1 Score=35.60 Aligned_cols=86 Identities=14% Similarity=0.073 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHH
Q 003028 550 YLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRK---AWEWYEAMLQAGLRP--NVPTCNSLLSAFLRVGQLSDA 624 (856)
Q Consensus 550 ~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~---A~~l~~~m~~~g~~p--d~~t~n~Li~ay~~~g~~e~A 624 (856)
.+..+++-|......+. ++..+-..+..++.+..+... +..+++++...+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34444555554444343 556666666666666665554 666666665532 12 223334456667777777777
Q ss_pred HHHHHHHHHCCCCCC
Q 003028 625 YHLLQGMLNLGLKPS 639 (856)
Q Consensus 625 ~~l~~~M~~~g~~Pd 639 (856)
.+.++.+++ +.|+
T Consensus 94 ~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHH--HCTT
T ss_pred HHHHHHHHH--hCCC
Confidence 777777776 4554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 856 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.74 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.74 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.32 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.3 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.87 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.82 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.78 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.76 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.74 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.64 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.55 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.46 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.45 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.24 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.88 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.86 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.85 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.82 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.81 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.69 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.68 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.66 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.61 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.59 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.51 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.5 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.5 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.34 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.27 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.26 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.22 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.05 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 96.94 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 96.91 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 96.9 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.63 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.62 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.59 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.51 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 96.5 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.46 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.36 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.34 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.25 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.14 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.06 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.97 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.91 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 95.48 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 95.29 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 95.02 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 94.96 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 92.37 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 91.91 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.75 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 90.35 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.32 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.27 | |
| d2d9ia1 | 83 | Nedd4-binding protein 2 {Human (Homo sapiens) [Tax | 89.1 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2.8e-14 Score=153.86 Aligned_cols=362 Identities=15% Similarity=0.083 Sum_probs=275.3
Q ss_pred hhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003028 336 QLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEAL 415 (856)
Q Consensus 336 ~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 415 (856)
..++++.|++.|+.+.+..+ -+...+..+..+|.+.|++++|..+|+...+.. +-+..+|..+..+|.+.|++++|+
T Consensus 11 ~~G~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~ 87 (388)
T d1w3ba_ 11 QAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccc
Confidence 45789999999999876532 357788899999999999999999999998763 346788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 003028 416 DVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQG 495 (856)
Q Consensus 416 ~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g 495 (856)
+.+....... ..+...+...............+........... .................+....+...+.......
T Consensus 88 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T d1w3ba_ 88 EHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred cccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccC
Confidence 9999998765 4455555556666666666666666666655543 3345555666677777888888888887776653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHH
Q 003028 496 CIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGL 575 (856)
Q Consensus 496 ~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~ 575 (856)
. -+...+..+...+...|++++|...+.+..+.. +-+...+..+...+...|++++|...+....... ..+...+..
T Consensus 166 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 242 (388)
T d1w3ba_ 166 P-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGN 242 (388)
T ss_dssp T-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred c-chhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHH
Confidence 2 256677788888889999999999998887653 2245677888888889999999999999888755 346677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003028 576 LVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEARS 655 (856)
Q Consensus 576 Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~g~ 655 (856)
+...|.+.|++++|...|++..+.. +-+..+|..+...|...|++++|++.++..... ...+...+..+...+...|+
T Consensus 243 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 320 (388)
T d1w3ba_ 243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCC
Confidence 8888999999999999999888753 345778888999999999999999999888763 34556777777777888888
Q ss_pred cchHHHHHHHHHHcCCChHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHH
Q 003028 656 PYDMGFCHELMAVSGHPAHMFLLSMPSPGPDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEV 735 (856)
Q Consensus 656 ~~~a~~l~~~m~~~g~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~ 735 (856)
+++|...+++..+..+ .+..++..+...|.+.|++++|.+.|++
T Consensus 321 ~~~A~~~~~~al~~~p------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 364 (388)
T d1w3ba_ 321 IEEAVRLYRKALEVFP------------------------------------EFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HHHHHHHHHHHTTSCT------------------------------------TCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC------------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777666554433211 1344567788888888999999988888
Q ss_pred HHhCCCCCCc
Q 003028 736 AAQKNVYPDA 745 (856)
Q Consensus 736 m~~~~~~Pd~ 745 (856)
..+. .|+.
T Consensus 365 al~l--~P~~ 372 (388)
T d1w3ba_ 365 AIRI--SPTF 372 (388)
T ss_dssp HHTT--CTTC
T ss_pred HHHh--CCCC
Confidence 8765 3543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.6e-14 Score=155.76 Aligned_cols=335 Identities=15% Similarity=0.088 Sum_probs=266.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003028 366 MVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF 445 (856)
Q Consensus 366 Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~ 445 (856)
+...+.+.|++++|.+.|+++.+.. +-+...|..+...|.+.|++++|+..|++..+.. +-+..+|..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 4556778999999999999998763 3468889999999999999999999999998764 4567889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 446 LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRD 525 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 525 (856)
+++|.+.+....+.. +.+...+......+...+....+............ ................+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccc-ccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHH
Confidence 999999999998874 34555666666666666666666666665554433 3455566667777788888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003028 526 MQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNV 605 (856)
Q Consensus 526 M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~ 605 (856)
..... +-+...+..+...+...|+.++|...++...+.. +-+...+..+...+...|++++|...|+...... +.+.
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 237 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence 77653 2346677788888999999999999999988754 3367788999999999999999999999998764 4677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHHHHhcCCCC
Q 003028 606 PTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS-LQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMFLLSMPSPG 684 (856)
Q Consensus 606 ~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd-~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~l~~~~ 684 (856)
..+..+...|.+.|++++|+..|++.++. .|+ ..++..+...+...|++++|...++......
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------- 301 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-------------- 301 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC--------------
Confidence 88899999999999999999999999984 454 5678888888999999887777665544322
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCccc
Q 003028 685 PDGQNVRDHVGSFLEMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVK 747 (856)
Q Consensus 685 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~aLi~~y~k~G~~eeA~~lf~~m~~~~~~Pd~~t 747 (856)
+.+...+..+...|.+.|++++|++.|++..+. .|+...
T Consensus 302 ----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 340 (388)
T d1w3ba_ 302 ----------------------PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAA 340 (388)
T ss_dssp ----------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHH
T ss_pred ----------------------CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH
Confidence 123456778899999999999999999998765 466544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=8.9e-10 Score=116.25 Aligned_cols=243 Identities=10% Similarity=0.018 Sum_probs=168.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003028 366 MVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGF 445 (856)
Q Consensus 366 Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~ 445 (856)
....+.+.|++++|...|+...+.. +-+...|..+..+|...|++++|...|++..+.. +-+...|..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 4556678888888888888887752 2357778888888888888888888888877654 3456777777788888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003028 446 LDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRD 525 (856)
Q Consensus 446 ~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 525 (856)
+++|.+.+++..... |+............. ..+...+...+..+...+.+.+|.+.|.+
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 888888888877642 221111000000000 00111111122334455667778888877
Q ss_pred HHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003028 526 MQNAGF-EPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPN 604 (856)
Q Consensus 526 M~~~gi-~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd 604 (856)
...... ..+...+..+...+...|++++|...|+...... +-+..+|..+...|.+.|++++|.+.|++..+.. +-+
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 239 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGY 239 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hcc
Confidence 665432 3346667777788888899999999998887754 2357788888889999999999999999888742 346
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 605 VPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 605 ~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
...|..+..+|.+.|++++|++.|++.++
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77888999999999999999999998876
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.3e-09 Score=115.06 Aligned_cols=274 Identities=14% Similarity=0.032 Sum_probs=180.9
Q ss_pred CCHHHHHHHHHhhhChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 325 MDAYQANQVLKQLQDHTVALGFFNWLRRQAGFKHDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHS 404 (856)
Q Consensus 325 ~~~~~~~~vL~~l~~~~~Al~~f~~m~~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~ 404 (856)
++.+..-..+-..++++.|+..|+.+.+.. +-+..+|..+..++...|++++|...|++..+.. +-+...|..+...
T Consensus 20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 96 (323)
T d1fcha_ 20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVS 96 (323)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccc
Confidence 334444445556689999999999998643 2357789999999999999999999999998753 3467889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003028 405 YGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAA 484 (856)
Q Consensus 405 ~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A 484 (856)
|...|++++|.+.++++.... |+.............. .+.......+..+.+.+.+++|
T Consensus 97 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a 155 (323)
T d1fcha_ 97 FTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEV 155 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHH
T ss_pred ccccccccccccchhhHHHhc--cchHHHHHhhhhhhhh-------------------cccccchhhHHHHHHhhHHHHH
Confidence 999999999999999988643 3322111000000000 0011111112233344556667
Q ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003028 485 HQLFCEMVNQG-CIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRR 563 (856)
Q Consensus 485 ~~lf~~m~~~g-~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~ 563 (856)
.+.|....+.. ...+...+..+...+...|++++|+..|++..... +-+...|..+...+...|++++|.+.|+...+
T Consensus 156 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 234 (323)
T d1fcha_ 156 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALE 234 (323)
T ss_dssp HHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHH
Confidence 77776665432 22356667777778888888888888888776643 22456677777788888888888888888776
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----------CCCCCHHHHHHHHHHHHHcCCHHHH
Q 003028 564 KNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQA----------GLRPNVPTCNSLLSAFLRVGQLSDA 624 (856)
Q Consensus 564 ~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~----------g~~pd~~t~n~Li~ay~~~g~~e~A 624 (856)
.. +-+..++..+..+|.+.|++++|...|++..+. ........|..+-.++...|+.+.+
T Consensus 235 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 235 LQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred Hh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 53 225667778888888888888888888877652 0111223455555565555555543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=7.5e-07 Score=92.88 Aligned_cols=269 Identities=13% Similarity=0.045 Sum_probs=184.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC-CCHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPN------VVTYNRLIHSYGRANYLNEALDVFKQMQVVG----CE-PDRV 431 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd------~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g----~~-pd~~ 431 (856)
......++...|++++|.++|++..+. .|+ ...+..+...|...|++++|+..|++..+.. .. ....
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 92 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 92 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 344456677889999999999888764 232 3456777788889999999999998875431 11 1134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCCCH
Q 003028 432 TYCTLIDIHAKAGFLDVAMDMYKKMQAA----GLSP---DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQG----CIPNL 500 (856)
Q Consensus 432 ty~~Ll~~~~k~g~~~~A~~l~~~m~~~----g~~p---d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g----~~pd~ 500 (856)
.+..+...+...|++..+...+.+.... +... ....+..+...+...|+++.+...+....... .....
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 172 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence 5566677788889999998888876542 1111 12345566778888999999999888876542 22234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CCHh
Q 003028 501 VTYNIMIALQAKARNYQSALKLYRDMQNAG--FEPD----KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWV---PDEP 571 (856)
Q Consensus 501 ~ty~~Li~~~~~~g~~~~A~~ll~~M~~~g--i~pd----~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~---pd~~ 571 (856)
.++..+...+...+.+.++...+.+..... .... ...+..+...+...|+.++|...+....+.... ....
T Consensus 173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 252 (366)
T d1hz4a_ 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 252 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence 556666777888899988888887665421 1111 223455566677889999998888876553222 1234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 572 VYGLLVDLWGKAGNVRKAWEWYEAMLQ----AGLRPN-VPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 572 ~y~~Li~~~~k~g~~~~A~~l~~~m~~----~g~~pd-~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.+..+...|...|++++|...++.... .+..|+ ...|..+...|...|++++|.+.|++.++
T Consensus 253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456677888889999999998887763 233332 45677788889999999999998887764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.82 E-value=6.1e-07 Score=93.87 Aligned_cols=188 Identities=13% Similarity=0.137 Sum_probs=143.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003028 444 GFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLY 523 (856)
Q Consensus 444 g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll 523 (856)
+..++|..+|++.++...+.+...|...+..+.+.|+++.|..+|+.+.+.........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888888888765556677788888888889999999999999887543333457888888888999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C
Q 003028 524 RDMQNAGFEPDKVTYSIVME-VLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAG-L 601 (856)
Q Consensus 524 ~~M~~~gi~pd~~ty~~ll~-a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g-~ 601 (856)
+.+.+..... ...|..... -+...|+.+.|..+|+.+.+.. ..+...+...++.+.+.|+++.|..+|++..... .
T Consensus 158 ~~al~~~~~~-~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDARTR-HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTTCC-THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhCCCc-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 9888765332 233333332 2344588899999999988753 4467788899999999999999999999987642 2
Q ss_pred CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 602 RP--NVPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 602 ~p--d~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
.| ....|...+.--...|+.+.+.++++++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33 256788888888888999999999988876
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=1.6e-06 Score=91.19 Aligned_cols=215 Identities=8% Similarity=0.050 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 361 HTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRAN-YLNEALDVFKQMQVVGCEPDRVTYCTLIDI 439 (856)
Q Consensus 361 ~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g-~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~ 439 (856)
..|+.+-.++.+.+.+++|.++++.+++.. +-+...|+....++...+ ++++|++.+++..+.. +-+..+|+.+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 356666667777788888888888887753 235667777777777765 4788888888877654 4567778888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----
Q 003028 440 HAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARN---- 515 (856)
Q Consensus 440 ~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~---- 515 (856)
+.+.|++++|++.++++++.. +-+...|..+...+.+.|++++|.+.|+.+.+.... +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence 888888888888888887763 346778888888888888888888888888776433 66677776666665554
Q ss_pred --HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHH
Q 003028 516 --YQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWV-PDEPVYGLLVDLWG 581 (856)
Q Consensus 516 --~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~-pd~~~y~~Li~~~~ 581 (856)
+++|++.+....+.. +-+...|..+...+. ....+++.+.++...+.... .+...+..++..|.
T Consensus 200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 567787777776653 224556655555443 34457777777776654322 23445555666554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.76 E-value=1.1e-06 Score=91.88 Aligned_cols=187 Identities=10% Similarity=0.152 Sum_probs=122.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003028 410 YLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFC 489 (856)
Q Consensus 410 ~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~ 489 (856)
..++|..+|++..+...+.+...|..++..+.+.|+++.|..+|+++++........+|...+..+.+.|+++.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34667777777665444445556666777777777777777777777765332234567777777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CC
Q 003028 490 EMVNQGCIPNLVTYNIMIAL-QAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKN-WV 567 (856)
Q Consensus 490 ~m~~~g~~pd~~ty~~Li~~-~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g-~~ 567 (856)
...+.+.. +...|...... +...|+.+.|..+|+.+... .+.+...|...+..+...|+.+.|..+|++..+.. ..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 77665332 33333333332 23356777788888877765 23345667777777777888888888888876643 22
Q ss_pred CC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003028 568 PD--EPVYGLLVDLWGKAGNVRKAWEWYEAMLQ 598 (856)
Q Consensus 568 pd--~~~y~~Li~~~~k~g~~~~A~~l~~~m~~ 598 (856)
|+ ...|...+.--...|+.+.+..+++++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 34677777766777888888888877765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=3.8e-06 Score=87.33 Aligned_cols=265 Identities=12% Similarity=0.023 Sum_probs=191.8
Q ss_pred HHhhhChhHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHH
Q 003028 334 LKQLQDHTVALGFFNWLRRQAGFKHD---EHTYTTMVGILGRARQFGAINKLLDQMVRDGC-QPN----VVTYNRLIHSY 405 (856)
Q Consensus 334 L~~l~~~~~Al~~f~~m~~~~g~~pd---~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~-~pd----~~ty~~Li~~~ 405 (856)
.-..++++.|+.+++.......-.+. ..++..+..+|...|++++|...|++..+... .++ ...+..+...+
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 101 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 34558999999999988764322221 34677788999999999999999998764211 112 34556677888
Q ss_pred HhcCCHHHHHHHHHHHHHc----CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHH
Q 003028 406 GRANYLNEALDVFKQMQVV----GCEPD---RVTYCTLIDIHAKAGFLDVAMDMYKKMQAAG----LSPDTFTYSVIINC 474 (856)
Q Consensus 406 ~~~g~~~~A~~lf~~m~~~----g~~pd---~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g----~~pd~~ty~~Li~~ 474 (856)
...|++..|...+.+.... +.... ...+..+...+...|+++.+...+....... ......++..+...
T Consensus 102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
T d1hz4a_ 102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999876532 21111 2355667788899999999999999887642 22335566677788
Q ss_pred HHccCCHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHH
Q 003028 475 LGKAGHLQAAHQLFCEMVNQ----GCIP--NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD---KVTYSIVMEVL 545 (856)
Q Consensus 475 y~k~g~~~~A~~lf~~m~~~----g~~p--d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd---~~ty~~ll~a~ 545 (856)
+...++...+...+...... +..+ ....+..+...+...|++++|...+..........+ ...+..+..++
T Consensus 182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 261 (366)
T d1hz4a_ 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 261 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 88999999999888776542 1111 123456677788899999999999987765432222 34556678889
Q ss_pred HhcCChHHHHHHHHHHHHc----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003028 546 GHCGYLDEAEAVFAEMRRK----NWVPD-EPVYGLLVDLWGKAGNVRKAWEWYEAMLQ 598 (856)
Q Consensus 546 ~~~g~~~~A~~l~~~m~~~----g~~pd-~~~y~~Li~~~~k~g~~~~A~~l~~~m~~ 598 (856)
...|++++|...++..... +..|+ ..++..+...|.+.|++++|.+.|++..+
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999987642 33333 45677888999999999999999988754
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=1.1e-05 Score=84.60 Aligned_cols=214 Identities=12% Similarity=0.100 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 432 TYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAG-HLQAAHQLFCEMVNQGCIPNLVTYNIMIALQ 510 (856)
Q Consensus 432 ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g-~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~ 510 (856)
.|+.+-..+.+.+.+++|+++++++++.. +-+...|+....++...| ++++|...++...+.... +..+|+.+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHH
Confidence 44445555556666666666666666652 234555565555555554 366666666666554322 556666666666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-----
Q 003028 511 AKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGN----- 585 (856)
Q Consensus 511 ~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~----- 585 (856)
.+.|++++|++.++++.+.. +-+...|..+...+...|++++|...++.+.+.+. -+...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchhh
Confidence 66666666776666666542 22355666666666666777777777776666542 245555555554444443
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
Q 003028 586 -VRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLK-PSLQTYTLLLSCCT 651 (856)
Q Consensus 586 -~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~-Pd~~ty~~Ll~a~~ 651 (856)
+++|...+....+.. +.+...|+.+...|. ....+++.+.++...+.... .+...+..+...+.
T Consensus 201 ~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 567777777766642 346677776655544 34456777777777652222 23344555555543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.55 E-value=3.5e-07 Score=96.70 Aligned_cols=269 Identities=9% Similarity=-0.020 Sum_probs=184.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH----------HHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003028 365 TMVGILGRARQFGAINKLLDQMVRDGCQPN-VVTYNRLIHS----------YGRANYLNEALDVFKQMQVVGCEPDRVTY 433 (856)
Q Consensus 365 ~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd-~~ty~~Li~~----------~~~~g~~~~A~~lf~~m~~~g~~pd~~ty 433 (856)
.++....+....++|.++++...+. .|+ ...|+..-.. +...+.+++|+.+|++..+.. +-+...|
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~ 110 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW 110 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHH
Confidence 3333333344457888888887764 344 3344332222 233455788888888887754 4566677
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 434 CTLIDIHAKAG--FLDVAMDMYKKMQAAGLSPDTFTYSV-IINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQ 510 (856)
Q Consensus 434 ~~Ll~~~~k~g--~~~~A~~l~~~m~~~g~~pd~~ty~~-Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~ 510 (856)
..+..++...+ ++++|...+.++.+.. +.+...+.. +...+...+.+++|...++...+.... +...|+.+...+
T Consensus 111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~ 188 (334)
T d1dcea1 111 HHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 188 (334)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHH
T ss_pred HHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 77777776665 4788999999888763 345565544 446777789999999999888876543 788888888999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 003028 511 AKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAW 590 (856)
Q Consensus 511 ~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~ 590 (856)
.+.|++++|...+...... .|+ ...++..+...+..+++...+....... .++...+..+...+...++.++|.
T Consensus 189 ~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 262 (334)
T d1dcea1 189 PQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESC 262 (334)
T ss_dssp HHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHH
Confidence 9999888776655543332 111 1223344556677788888888777654 345556677777888889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 591 EWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLL 647 (856)
Q Consensus 591 ~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll 647 (856)
..+.+..+.. +.+...|..+...|...|++++|++.|++.++ +.|+...|..-+
T Consensus 263 ~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~L 316 (334)
T d1dcea1 263 KELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDL 316 (334)
T ss_dssp HHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHHHH
T ss_pred HHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHHHH
Confidence 9998877532 23457788889999999999999999999988 577655554433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.46 E-value=4.9e-06 Score=83.55 Aligned_cols=197 Identities=10% Similarity=-0.032 Sum_probs=85.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 433 YCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAK 512 (856)
Q Consensus 433 y~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~ 512 (856)
|..+..+|.+.|++++|++.|++.++.. +-+..+|+.+..+|.+.|++++|.+.|++..+.... +..+|..+...|..
T Consensus 40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 40 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHHH
Confidence 3334444445555555555555544432 223444555555555555555555555555443211 33344445555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC----HHH
Q 003028 513 ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGN----VRK 588 (856)
Q Consensus 513 ~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~----~~~ 588 (856)
.|++++|++.|+...+... .+......+...+.+.+..+.+..+........ ++...++ ++..+..... .+.
T Consensus 118 ~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~ 193 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLMER 193 (259)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHHH
Confidence 5555555555555444321 122222222222233333333333333333221 1111111 1111111111 111
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003028 589 AWEWYEAMLQAGLRP-NVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPS 639 (856)
Q Consensus 589 A~~l~~~m~~~g~~p-d~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd 639 (856)
+...+...... .| ...+|..+...|...|++++|++.|++.+. ..|+
T Consensus 194 ~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~ 241 (259)
T d1xnfa_ 194 LKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVH 241 (259)
T ss_dssp HHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCT
T ss_pred HHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCC
Confidence 11111111100 01 123566677888888888888888888876 3454
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=3.6e-06 Score=84.57 Aligned_cols=96 Identities=9% Similarity=-0.090 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHA 441 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~ 441 (856)
+|..+..+|.+.|++++|...|++..+.. +-+..+|+.+..+|.+.|++++|++.|++..+.. +-+..++..+..+|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 34444555555555555555555555431 2244555555555555555555555555555432 223344445555555
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 003028 442 KAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 442 k~g~~~~A~~l~~~m~~~ 459 (856)
..|++++|.+.|+..++.
T Consensus 117 ~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhh
Confidence 555555555555555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.24 E-value=3.6e-06 Score=88.63 Aligned_cols=266 Identities=9% Similarity=-0.002 Sum_probs=186.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHH----------HHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003028 398 YNRLIHSYGRANYLNEALDVFKQMQVVGCEPDR-VTYCTLIDI----------HAKAGFLDVAMDMYKKMQAAGLSPDTF 466 (856)
Q Consensus 398 y~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~-~ty~~Ll~~----------~~k~g~~~~A~~l~~~m~~~g~~pd~~ 466 (856)
+..++....+.+..++|++++++..+. .|+. ..|+..-.. +...|++++|+.+++...+.. +-+..
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~ 108 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYG 108 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHH
Confidence 344444444455568999999999875 3554 345433322 223445889999999998763 44777
Q ss_pred HHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003028 467 TYSVIINCLGKAG--HLQAAHQLFCEMVNQGCIPNLVTYNIMI-ALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVME 543 (856)
Q Consensus 467 ty~~Li~~y~k~g--~~~~A~~lf~~m~~~g~~pd~~ty~~Li-~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~ 543 (856)
.|..+..++...+ ++++|...+....+... ++...|..++ ..+...+.+++|+..++.+..... -+...|..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~ 186 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSC 186 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHH
T ss_pred HHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 7777777776665 58999999999887632 3566665444 667778999999999998877642 35778888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003028 544 VLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSD 623 (856)
Q Consensus 544 a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~ 623 (856)
.+...|++++|...+....+.. | ....+...+...+..+++...+....... +++...+..+...+...|+.++
T Consensus 187 ~~~~~~~~~~A~~~~~~~~~~~--~---~~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~ 260 (334)
T d1dcea1 187 LLPQLHPQPDSGPQGRLPENVL--L---KELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELE 260 (334)
T ss_dssp HHHHHSCCCCSSSCCSSCHHHH--H---HHHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHhHHhH--H---HHHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHH
Confidence 9999999888766655443321 1 11223344566677778888888877653 4556667778888888999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCChHHH
Q 003028 624 AYHLLQGMLNLGLKPS-LQTYTLLLSCCTEARSPYDMGFCHELMAVSGHPAHMF 676 (856)
Q Consensus 624 A~~l~~~M~~~g~~Pd-~~ty~~Ll~a~~~~g~~~~a~~l~~~m~~~g~~~~~~ 676 (856)
|+..+.+.... .|+ ..++..+..++...|+.++|...++...+..+....+
T Consensus 261 a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y 312 (334)
T d1dcea1 261 SCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 312 (334)
T ss_dssp HHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHH
Confidence 99999988753 343 3566677778889999999999888887776643333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.88 E-value=0.00019 Score=73.51 Aligned_cols=95 Identities=12% Similarity=0.004 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHH
Q 003028 538 YSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDE------PVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLR----PNVPT 607 (856)
Q Consensus 538 y~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~------~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~----pd~~t 607 (856)
+..+...+...|++++|..+|+.+......... ..+..++..+...|+++.|...|++..+.... .....
T Consensus 161 ~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~ 240 (290)
T d1qqea_ 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF 240 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHH
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHH
Confidence 444445555555555555555554443211100 11222333444556666666666555432100 01223
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHH
Q 003028 608 CNSLLSAFLR--VGQLSDAYHLLQGML 632 (856)
Q Consensus 608 ~n~Li~ay~~--~g~~e~A~~l~~~M~ 632 (856)
...++.+|-. .+.+++|+..|+++.
T Consensus 241 l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 241 LKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 3445555443 234566666665443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=0.00034 Score=67.04 Aligned_cols=122 Identities=13% Similarity=0.024 Sum_probs=59.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003028 406 GRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAH 485 (856)
Q Consensus 406 ~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~ 485 (856)
...|++++|++.|.++. +|+..+|..+..+|...|++++|++.|++.++.. +-+...|..+..+|.+.|++++|.
T Consensus 16 ~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 44444555544444321 3344444444444555555555555555544432 223444444444455555555555
Q ss_pred HHHHHHHHc------------CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003028 486 QLFCEMVNQ------------GCI--P-NLVTYNIMIALQAKARNYQSALKLYRDMQNAGFE 532 (856)
Q Consensus 486 ~lf~~m~~~------------g~~--p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~ 532 (856)
+.|++.... |.. . ...++..+..+|.+.|++++|.+.|.........
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 444443321 000 0 1234455566677777777777777766654433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.85 E-value=0.00034 Score=71.57 Aligned_cols=62 Identities=15% Similarity=0.054 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----H-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 572 VYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPN-----V-PTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 572 ~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd-----~-~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
++..+...|.+.|++++|..+|++......... . ..|..++..+...|+++.|...|++..+
T Consensus 160 ~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 355556666666666666666666554311111 0 1223344455556666666666666554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=0.00035 Score=66.97 Aligned_cols=125 Identities=11% Similarity=0.012 Sum_probs=93.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003028 367 VGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFL 446 (856)
Q Consensus 367 i~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~ 446 (856)
...+...|+++.|.+.|+++. +|+..+|..+..+|...|++++|++.|++..+.. +-+...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 445567888888888887642 4677788888888888888888888888887765 55677888888888888888
Q ss_pred HHHHHHHHHHHHCC------------C--CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 003028 447 DVAMDMYKKMQAAG------------L--SP-DTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGC 496 (856)
Q Consensus 447 ~~A~~l~~~m~~~g------------~--~p-d~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~ 496 (856)
++|++.|++.+... . .+ ...++..+..+|.+.|++++|.+.|....+...
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 88888888876531 0 01 124556677788899999999999988776533
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.81 E-value=0.014 Score=57.73 Aligned_cols=80 Identities=18% Similarity=0.139 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCH
Q 003028 550 YLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGK----AGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR----VGQL 621 (856)
Q Consensus 550 ~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k----~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~----~g~~ 621 (856)
+...+...++...+.+ +......|-..|.. ..++++|..+|+...+.| +...+..|...|.+ ..+.
T Consensus 161 ~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~ 234 (265)
T d1ouva_ 161 DLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNE 234 (265)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCS
T ss_pred ccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCH
Confidence 3444444444444433 23333333333333 346666666666666654 44455555555543 2256
Q ss_pred HHHHHHHHHHHHCC
Q 003028 622 SDAYHLLQGMLNLG 635 (856)
Q Consensus 622 e~A~~l~~~M~~~g 635 (856)
++|++.|++..+.|
T Consensus 235 ~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 235 KQAIENFKKGCKLG 248 (265)
T ss_dssp TTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc
Confidence 66666666665544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=0.00032 Score=61.30 Aligned_cols=101 Identities=13% Similarity=0.063 Sum_probs=74.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003028 542 MEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQL 621 (856)
Q Consensus 542 l~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~ 621 (856)
...+...|++++|..+|....+.. +-+...|..+..+|.+.|++++|...++...+.. +.+...|..+..+|...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 445667788888888888877654 3466778888888888888888888888887653 55777788888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHH
Q 003028 622 SDAYHLLQGMLNLGLKPSLQTYTLL 646 (856)
Q Consensus 622 e~A~~l~~~M~~~g~~Pd~~ty~~L 646 (856)
++|+..|++.++ +.|+...+...
T Consensus 88 ~~A~~~~~~a~~--~~p~~~~~~~~ 110 (117)
T d1elwa_ 88 EEAKRTYEEGLK--HEANNPQLKEG 110 (117)
T ss_dssp HHHHHHHHHHHT--TCTTCHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHH
Confidence 888888888876 45665444333
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.68 E-value=0.032 Score=54.92 Aligned_cols=224 Identities=13% Similarity=0.054 Sum_probs=151.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003028 359 DEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGR----ANYLNEALDVFKQMQVVGCEPDRVTYC 434 (856)
Q Consensus 359 d~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~----~g~~~~A~~lf~~m~~~g~~pd~~ty~ 434 (856)
|+..+..|-..+...+++++|.+.|++..+.| +...+..|-..|.. ..+...|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34466667777778888899999888888764 55666666666665 567888888888877655 334444
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003028 435 TLIDIHAK----AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLG----KAGHLQAAHQLFCEMVNQGCIPNLVTYNIM 506 (856)
Q Consensus 435 ~Ll~~~~k----~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~----k~g~~~~A~~lf~~m~~~g~~pd~~ty~~L 506 (856)
.+...+.. ..+.+.|...++.....|.. .....+...+. .......+...+...... .+...+..|
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence 44444433 45778888888888776532 23333333333 244577777777776664 466777777
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 003028 507 IALQAK----ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGH----CGYLDEAEAVFAEMRRKNWVPDEPVYGLLVD 578 (856)
Q Consensus 507 i~~~~~----~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~----~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~ 578 (856)
...|.. ..+...+...++...+.| +......+-..+.. ..+.++|...|....+.| ++..+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 777775 456677778877777665 44444445444443 468899999999988876 4566667777
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcC
Q 003028 579 LWGK----AGNVRKAWEWYEAMLQAG 600 (856)
Q Consensus 579 ~~~k----~g~~~~A~~l~~~m~~~g 600 (856)
+|.+ ..+.++|.++|++..+.|
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 7765 347888999998887766
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.00079 Score=61.98 Aligned_cols=90 Identities=12% Similarity=0.072 Sum_probs=47.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 003028 403 HSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQ 482 (856)
Q Consensus 403 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~ 482 (856)
..|.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|...|++.++.. +-+..+|..+..+|...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHH
Confidence 34445555555555555555443 3344555555555555555555555555555442 224455555555555555555
Q ss_pred HHHHHHHHHHHc
Q 003028 483 AAHQLFCEMVNQ 494 (856)
Q Consensus 483 ~A~~lf~~m~~~ 494 (856)
+|...|++....
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 555555555543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=0.001 Score=61.15 Aligned_cols=106 Identities=14% Similarity=0.092 Sum_probs=87.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK 442 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k 442 (856)
+......|.+.|++++|...|++..+.. +-+...|..+..+|...|++++|++.|++..+.. +-+..+|..+..+|..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence 4455667889999999999999998864 4578889999999999999999999999998875 5567899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003028 443 AGFLDVAMDMYKKMQAAGLSPDTFTYSVI 471 (856)
Q Consensus 443 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~L 471 (856)
.|++++|...|++..... +-+...+..+
T Consensus 91 ~g~~~eA~~~~~~a~~~~-p~~~~~~~~l 118 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVK-PHDKDAKMKY 118 (159)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 999999999999998864 2244444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.0013 Score=57.11 Aligned_cols=91 Identities=9% Similarity=-0.034 Sum_probs=54.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003028 367 VGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFL 446 (856)
Q Consensus 367 i~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~ 446 (856)
.+.+.+.|++++|..+|++..+.. +-+...|..+..+|.+.|++++|+..|.+..+.. +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 444555666666666666665542 2355556666666666666666666666665554 44555666666666666666
Q ss_pred HHHHHHHHHHHHC
Q 003028 447 DVAMDMYKKMQAA 459 (856)
Q Consensus 447 ~~A~~l~~~m~~~ 459 (856)
++|+..|++.++.
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666553
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.51 E-value=0.00059 Score=64.82 Aligned_cols=54 Identities=11% Similarity=-0.069 Sum_probs=20.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 402 IHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKM 456 (856)
Q Consensus 402 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m 456 (856)
...|.+.|++++|+..|++..... +.+...|+.+..+|.+.|++++|+..|++.
T Consensus 11 Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~a 64 (201)
T d2c2la1 11 GNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRA 64 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHH
Confidence 333344444444444444333322 223333333334444444444444444433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.50 E-value=0.012 Score=60.89 Aligned_cols=104 Identities=11% Similarity=0.068 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAK 442 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k 442 (856)
|.-++..+.+.+++..|.+++... -+..+|..+...+.+......| .+.......+......++..|-.
T Consensus 43 ~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~ 111 (336)
T d1b89a_ 43 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQD 111 (336)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHH
Confidence 555555555555555554444322 1344555555555555444332 11111222333344445555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 003028 443 AGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKA 478 (856)
Q Consensus 443 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~ 478 (856)
.|.+++...+++..... -..+...++-++..|++.
T Consensus 112 ~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 112 RGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp TTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred cCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 55555555555544322 133444555555555554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.50 E-value=0.00066 Score=64.46 Aligned_cols=99 Identities=10% Similarity=0.027 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 358 HDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 358 pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
|+...+......|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 566677778899999999999999999988763 4578889999999999999999999999998653 33577889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 003028 438 DIHAKAGFLDVAMDMYKKMQA 458 (856)
Q Consensus 438 ~~~~k~g~~~~A~~l~~~m~~ 458 (856)
.+|.+.|++++|+..|++..+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.00043 Score=61.06 Aligned_cols=106 Identities=16% Similarity=0.106 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 003028 539 SIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGN---VRKAWEWYEAMLQAGLRPN-VPTCNSLLSA 614 (856)
Q Consensus 539 ~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~---~~~A~~l~~~m~~~g~~pd-~~t~n~Li~a 614 (856)
..+++.+...+++++|++.|+.....+ +.+..++..+..++.+.++ +++|..+|+++......|+ ..+|..|..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356677777888888888888888755 3466777777777776544 4468888888775432222 2367778888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 615 FLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLL 647 (856)
Q Consensus 615 y~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll 647 (856)
|.+.|++++|++.|+++++ +.|+..-...+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~ 112 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKELE 112 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHH
Confidence 8888888888888888887 567755444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.27 E-value=0.0011 Score=57.11 Aligned_cols=88 Identities=7% Similarity=0.018 Sum_probs=52.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003028 367 VGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFL 446 (856)
Q Consensus 367 i~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~ 446 (856)
...+.+.|++++|...|++..+.. +-+...|..+..+|.+.+++++|+..|++..+.. +.+...|..+...|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 444555666666666666665542 2245566666666666666666666666665543 33455666666666666666
Q ss_pred HHHHHHHHHH
Q 003028 447 DVAMDMYKKM 456 (856)
Q Consensus 447 ~~A~~l~~~m 456 (856)
++|++.|++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.26 E-value=0.066 Score=55.07 Aligned_cols=136 Identities=10% Similarity=0.091 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003028 358 HDEHTYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLI 437 (856)
Q Consensus 358 pd~~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll 437 (856)
||...-..+.+.|-+.|.++.|..+|..+.. |..++..|.+.++++.|.+++.+. -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 3433444455556666666666666654443 555566666666666666655443 1344565666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003028 438 DIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKAR 514 (856)
Q Consensus 438 ~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g 514 (856)
..|.+......+ .+.......+......++..|-..|.+++...+++..... -..+...++.++..|++.+
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 666555544332 1122223334444555666666666666666666654432 1234455566666665543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.22 E-value=0.0014 Score=56.42 Aligned_cols=86 Identities=13% Similarity=-0.011 Sum_probs=44.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 003028 403 HSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQ 482 (856)
Q Consensus 403 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~ 482 (856)
..+.+.|++++|+..|++..... +-+...|..+..++.+.|++++|+..|++.++.. +.+..+|..+...|...|+++
T Consensus 24 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 24 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHH
Confidence 34445555555555555555443 2244555555555555555555555555555442 223455555555555555555
Q ss_pred HHHHHHHH
Q 003028 483 AAHQLFCE 490 (856)
Q Consensus 483 ~A~~lf~~ 490 (856)
+|.+.|++
T Consensus 102 ~A~~~l~~ 109 (112)
T d1hxia_ 102 AALASLRA 109 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.05 E-value=0.0015 Score=57.42 Aligned_cols=15 Identities=7% Similarity=-0.108 Sum_probs=5.4
Q ss_pred HHccCCHHHHHHHHH
Q 003028 475 LGKAGHLQAAHQLFC 489 (856)
Q Consensus 475 y~k~g~~~~A~~lf~ 489 (856)
|.+.|++++|.+.|+
T Consensus 82 y~~~g~~~~A~~~~~ 96 (122)
T d1nzna_ 82 NYRLKEYEKALKYVR 96 (122)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHH
Confidence 333333333333333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.0071 Score=56.08 Aligned_cols=123 Identities=18% Similarity=0.044 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 003028 501 VTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLW 580 (856)
Q Consensus 501 ~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~ 580 (856)
..+...-..+.+.|++++|+..|.+......... +..+.-......+. ..+|+.+..+|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~--------------~~~~~~~~~~~~~~-------~~~~~nla~~y 72 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES--------------SFSNEEAQKAQALR-------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC--------------CCCSHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--------------ccchHHHhhhchhH-------HHHHHHHHHHH
Confidence 3445555678888888888888887765311000 00011111111111 23577788889
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003028 581 GKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLL 647 (856)
Q Consensus 581 ~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll 647 (856)
.+.|++++|...++...+.. +.++..|..+..+|...|++++|+..|++.++ +.|+.......+
T Consensus 73 ~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l 136 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQL 136 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHH
T ss_pred Hhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 99999999999999998763 44888999999999999999999999999988 556544443333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=96.91 E-value=0.011 Score=53.73 Aligned_cols=127 Identities=14% Similarity=-0.008 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 003028 500 LVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDL 579 (856)
Q Consensus 500 ~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~ 579 (856)
...+......+.+.|++.+|+..|.+....-.... ............. ....+|+.+..+
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~-------------~~~~~~~~~~~~~-------~~~~~~~Nla~~ 76 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE-------------EWDDQILLDKKKN-------IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT-------------TCCCHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchh-------------hhhhHHHHHhhhh-------HHHHHHhhHHHH
Confidence 34455566778888888888888887765311000 0000000000000 112467788889
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003028 580 WGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSLQTYTLLLSC 649 (856)
Q Consensus 580 ~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a 649 (856)
|.+.|++++|++.++...+.. +.+..+|..+..+|...|++++|+..|++.++ +.|+.......+..
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~~ 143 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYEL 143 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHH
T ss_pred HHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 999999999999999988763 55889999999999999999999999999997 56766555444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.016 Score=53.57 Aligned_cols=95 Identities=6% Similarity=-0.014 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003028 363 YTTMVGILGRARQFGAINKLLDQMVRDGCQ-P-------------NVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEP 428 (856)
Q Consensus 363 y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~-p-------------d~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p 428 (856)
+......+.+.|++++|...|.+..+.--. + -..+|+.+..+|.+.|++++|+..+++..... +.
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~ 94 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SN 94 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-cc
Confidence 344455566666777777766665542100 0 01233334444444555555555554444432 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 429 DRVTYCTLIDIHAKAGFLDVAMDMYKKMQA 458 (856)
Q Consensus 429 d~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~ 458 (856)
+..+|..+..+|...|++++|...|++.++
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444445555555555555554444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.013 Score=51.26 Aligned_cols=52 Identities=8% Similarity=0.103 Sum_probs=21.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003028 404 SYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKM 456 (856)
Q Consensus 404 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m 456 (856)
.|.+.|++++|+..|.+..+.. +.+...|..+..+|.+.|++++|+..++++
T Consensus 13 ~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (128)
T d1elra_ 13 DAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHH
Confidence 3444444444444444443332 223334444444444444444444444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.62 E-value=0.014 Score=54.63 Aligned_cols=71 Identities=7% Similarity=0.039 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-----HcCCCCCHHH
Q 003028 431 VTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMV-----NQGCIPNLVT 502 (856)
Q Consensus 431 ~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~-----~~g~~pd~~t 502 (856)
..+..+...+.+.|++++|+..++.+++.. +-+...|..++.+|.+.|+.++|.+.|+++. +.|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 345556666666777777777777666652 3466666777777777777777776666653 2466666544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.59 E-value=0.013 Score=53.88 Aligned_cols=78 Identities=6% Similarity=-0.113 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003028 431 VTYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQ 510 (856)
Q Consensus 431 ~ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~ 510 (856)
..|..+..++.+.|++++|+..+.+.++.. +-+..+|..+..+|...|++++|...|+...+.... +...+..|..+.
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~ 155 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344455555566666666666666665542 234555555666666666666666666655554211 334444444433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.51 E-value=0.023 Score=53.06 Aligned_cols=122 Identities=15% Similarity=0.074 Sum_probs=85.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 003028 507 IALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNV 586 (856)
Q Consensus 507 i~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~ 586 (856)
.......|++++|.+.|.+....- +... +......+.+...-..+... ....+..+...+.+.|++
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCc
Confidence 356778899999999999887641 1110 00011111111111122211 234677889999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 003028 587 RKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLN-----LGLKPSLQTY 643 (856)
Q Consensus 587 ~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~-----~g~~Pd~~ty 643 (856)
++|...++.+.... +-+...|..++.+|.+.|+.++|++.|+++.+ .|+.|...+-
T Consensus 84 ~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 84 SAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred hHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 99999999998763 56889999999999999999999999998753 6899987653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=96.50 E-value=0.05 Score=49.01 Aligned_cols=62 Identities=13% Similarity=-0.019 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 003028 432 TYCTLIDIHAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 432 ty~~Ll~~~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
+|+.+..+|.+.|++++|++.+++.++.. +.+..+|..+..+|...|++++|...|+...+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555556666666666666666655542 335556666666666666666666666665554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.46 E-value=0.024 Score=49.52 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HHHHH
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPD-------RVTYC 434 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd-------~~ty~ 434 (856)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|++.++++.+.. +.+ ..+|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 35567778899999999999999998863 3478889999999999999999999999987532 111 23566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 003028 435 TLIDIHAKAGFLDVAMDMYKKMQAA 459 (856)
Q Consensus 435 ~Ll~~~~k~g~~~~A~~l~~~m~~~ 459 (856)
.+...+...+++++|++.|++....
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 6777778888899999988887654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.36 E-value=0.028 Score=51.61 Aligned_cols=79 Identities=18% Similarity=0.047 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003028 465 TFTYSVIINCLGKAGHLQAAHQLFCEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEV 544 (856)
Q Consensus 465 ~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a 544 (856)
...|..+..+|.+.|++++|+..++...+... .+...|..+..+|...|++++|+..|+...+... .+......+..+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-~n~~~~~~l~~~ 154 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 44556666777777888888887777776532 2566777777777778888888877777776431 234444444443
Q ss_pred H
Q 003028 545 L 545 (856)
Q Consensus 545 ~ 545 (856)
.
T Consensus 155 ~ 155 (169)
T d1ihga1 155 K 155 (169)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.34 E-value=0.033 Score=51.13 Aligned_cols=96 Identities=6% Similarity=0.012 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003028 362 TYTTMVGILGRARQFGAINKLLDQMVRD---GCQPN-----------VVTYNRLIHSYGRANYLNEALDVFKQMQVVGCE 427 (856)
Q Consensus 362 ~y~~Li~~~~k~g~~~~A~~lf~~m~~~---g~~pd-----------~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~ 427 (856)
.+.-....+.+.|++++|...|...... ....+ ..+|+.+..+|.+.|++++|+..+++..... +
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p 95 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 95 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-c
Confidence 3445556666777777777777665431 00000 1123333444444555555555554444432 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 428 PDRVTYCTLIDIHAKAGFLDVAMDMYKKMQA 458 (856)
Q Consensus 428 pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~ 458 (856)
.+..+|..+..+|...|++++|...|+++++
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444445555555555544444
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.25 E-value=0.044 Score=50.20 Aligned_cols=27 Identities=7% Similarity=-0.002 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003028 397 TYNRLIHSYGRANYLNEALDVFKQMQV 423 (856)
Q Consensus 397 ty~~Li~~~~~~g~~~~A~~lf~~m~~ 423 (856)
.+.-....+.+.|++++|+..|++...
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~ 43 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVS 43 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355566778889999999999987654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.0027 Score=70.02 Aligned_cols=166 Identities=12% Similarity=0.044 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003028 411 LNEALDVFKQMQVVGCEPDRVTYCTLIDI--HAKAGFLDVAMDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLF 488 (856)
Q Consensus 411 ~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~--~~k~g~~~~A~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf 488 (856)
+..+.+.++...+..-.++..-....+.. +...+.++.++..+....+.. .++...+..+-..+.+.|+.++|...+
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 143 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQ 143 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------C
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHH
Confidence 34556666665544323333222222212 222344455554444433321 234556667777788888888888777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003028 489 CEMVNQGCIPNLVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPD-KVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWV 567 (856)
Q Consensus 489 ~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd-~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~ 567 (856)
....... ...++..|...+...|++++|+..|++..+.. |+ ...|+.+...+...|+..+|...|.+..... .
T Consensus 144 ~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~--P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~ 217 (497)
T d1ya0a1 144 SSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV--PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-F 217 (497)
T ss_dssp CHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-B
T ss_pred HHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-C
Confidence 6654421 12456667788888889999999888887753 44 5688888888888899988888888887654 4
Q ss_pred CCHhhHHHHHHHHHhc
Q 003028 568 PDEPVYGLLVDLWGKA 583 (856)
Q Consensus 568 pd~~~y~~Li~~~~k~ 583 (856)
|-..++..|...|.+.
T Consensus 218 ~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 218 PFPAASTNLQKALSKA 233 (497)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 5677777777776554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.0047 Score=68.02 Aligned_cols=113 Identities=12% Similarity=0.039 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 003028 500 LVTYNIMIALQAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDL 579 (856)
Q Consensus 500 ~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~gi~pd~~ty~~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~ 579 (856)
...+..+-..+.+.|+.++|...+....... | ...+..+...+...|++++|...|.+..+.. +-+...|+.|...
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence 3445555555556666666665555443211 1 1244455555566666666666666665543 2234556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003028 580 WGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR 617 (856)
Q Consensus 580 ~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~ 617 (856)
|...|+..+|...|.+..... +|-..++..|...|.+
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 666666666666666655432 3455555555555543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.97 E-value=0.0053 Score=61.55 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=24.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 408 ANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVAMDMYKKMQA 458 (856)
Q Consensus 408 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A~~l~~~m~~ 458 (856)
.|++++|+..|++..+.. +-|...+..+...|+..|++++|.+.|+...+
T Consensus 9 ~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444555555554444432 33444444455555555555555555554444
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.91 E-value=0.0057 Score=61.30 Aligned_cols=123 Identities=10% Similarity=-0.057 Sum_probs=73.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003028 370 LGRARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYGRANYLNEALDVFKQMQVVGCEPDRVTYCTLIDIHAKAGFLDVA 449 (856)
Q Consensus 370 ~~k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~Ll~~~~k~g~~~~A 449 (856)
..+.|++++|...|++..+.. +-|...+..|...|+..|++++|...|+...+.. +-+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 346788999999999888763 4577888889999999999999999998887753 22334444444443333222222
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 003028 450 MDMYKKMQAAGLSPDTFTYSVIINCLGKAGHLQAAHQLFCEMVNQ 494 (856)
Q Consensus 450 ~~l~~~m~~~g~~pd~~ty~~Li~~y~k~g~~~~A~~lf~~m~~~ 494 (856)
..-+......+-+++...+......+...|+.++|..+++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111110000111122233334445566677777777777776654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.48 E-value=0.035 Score=49.72 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003028 585 NVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVG-----------QLSDAYHLLQGMLNLGLKPSLQTYTLLLSCCTEA 653 (856)
Q Consensus 585 ~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g-----------~~e~A~~l~~~M~~~g~~Pd~~ty~~Ll~a~~~~ 653 (856)
.+++|...|++..+.. +.+..+|..+..+|...| .+++|.+.|++.++ +.|+..+|...|..+.
T Consensus 56 ~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~~-- 130 (145)
T d1zu2a1 56 MIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA-- 130 (145)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHHH--
Confidence 3456666666666532 345566666666665544 35778888888887 6788877777666653
Q ss_pred CCcchHHHHHHHHHHcC
Q 003028 654 RSPYDMGFCHELMAVSG 670 (856)
Q Consensus 654 g~~~~a~~l~~~m~~~g 670 (856)
.+..++.+..+.|
T Consensus 131 ----ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 131 ----KAPQLHAEAYKQG 143 (145)
T ss_dssp ----THHHHHHHHHHSS
T ss_pred ----HHHHHHHHHHHHh
Confidence 3444554444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.29 E-value=0.05 Score=48.58 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=14.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003028 372 RARQFGAINKLLDQMVRDGCQPNVVTYNRLIHSYG 406 (856)
Q Consensus 372 k~g~~~~A~~lf~~m~~~g~~pd~~ty~~Li~~~~ 406 (856)
+.+.+++|...|+...+.. +.+...|..+-.+|.
T Consensus 9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~ 42 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLL 42 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHH
Confidence 3344455555555544432 223344444444433
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=95.02 E-value=0.15 Score=45.71 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=31.7
Q ss_pred HHHHH--HHHHHhcCCHHHHHHHHHHHHHcCC-CCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003028 362 TYTTM--VGILGRARQFGAINKLLDQMVRDGC-QPN----------VVTYNRLIHSYGRANYLNEALDVFKQMQ 422 (856)
Q Consensus 362 ~y~~L--i~~~~k~g~~~~A~~lf~~m~~~g~-~pd----------~~ty~~Li~~~~~~g~~~~A~~lf~~m~ 422 (856)
+|..+ ...+...|++++|...|++..+..- .|+ ...|+.+..+|.+.|++++|++.+++..
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 34444 3344455666666666666654210 011 2345555556666666666665555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=94.96 E-value=0.15 Score=45.67 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003028 571 PVYGLLVDLWGKAGNVRKAWEWYEAMLQA-----GLRPN-----VPTCNSLLSAFLRVGQLSDAYHLLQGMLN 633 (856)
Q Consensus 571 ~~y~~Li~~~~k~g~~~~A~~l~~~m~~~-----g~~pd-----~~t~n~Li~ay~~~g~~e~A~~l~~~M~~ 633 (856)
..|+.+..+|.+.|++++|...+++.... ...++ ...|+.+..+|...|++++|++.|++.++
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777776665531 11121 23567778888999999999999888764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.3 Score=39.60 Aligned_cols=65 Identities=22% Similarity=0.184 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003028 574 GLLVDLWGKAGNVRKAWEWYEAMLQA-----GLRPN-VPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGLKPSL 640 (856)
Q Consensus 574 ~~Li~~~~k~g~~~~A~~l~~~m~~~-----g~~pd-~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~~Pd~ 640 (856)
-.+...+.+.|++++|...|++..+. ...++ ..+++.|..+|.+.|++++|+..++++++ +.|+.
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~~ 79 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH--hCcCC
Confidence 34555566666777776666665432 01111 45566677777777777777777777766 34553
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.91 E-value=0.64 Score=37.48 Aligned_cols=64 Identities=13% Similarity=0.073 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003028 361 HTYTTMVGILGRARQFGAINKLLDQMVRDG-----CQPN-VVTYNRLIHSYGRANYLNEALDVFKQMQVV 424 (856)
Q Consensus 361 ~~y~~Li~~~~k~g~~~~A~~lf~~m~~~g-----~~pd-~~ty~~Li~~~~~~g~~~~A~~lf~~m~~~ 424 (856)
..+-.+...+.+.|+++.|...|++..+.. ..++ ..+++.|..+|.+.|++++|++.++++.+.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 344456666677777777777776655321 0111 345666666667777777777777666654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.75 E-value=1.9 Score=36.82 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=43.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCC
Q 003028 549 GYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGK----AGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLR----VGQ 620 (856)
Q Consensus 549 g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k----~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~----~g~ 620 (856)
.+.++|...++...+.| +......|-..|.. ..+.++|.++|++..+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 44555555555555544 23334444444433 345666666666666654 44444455555544 345
Q ss_pred HHHHHHHHHHHHHCC
Q 003028 621 LSDAYHLLQGMLNLG 635 (856)
Q Consensus 621 ~e~A~~l~~~M~~~g 635 (856)
.++|+++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 666666666665544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=90.35 E-value=2.9 Score=35.48 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=6.8
Q ss_pred CHHHHHHHHHHHHHc
Q 003028 480 HLQAAHQLFCEMVNQ 494 (856)
Q Consensus 480 ~~~~A~~lf~~m~~~ 494 (856)
+.++|.++|+...+.
T Consensus 74 d~~~A~~~~~~aa~~ 88 (133)
T d1klxa_ 74 DLRKAAQYYSKACGL 88 (133)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHhhhhcc
Confidence 344444444444443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.32 E-value=4.6 Score=34.15 Aligned_cols=64 Identities=22% Similarity=0.162 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003028 572 VYGLLVDLWGKAGNVRKAWEWYEAMLQAGLRPNVPTCNSLLSAFLRVGQLSDAYHLLQGMLNLGL 636 (856)
Q Consensus 572 ~y~~Li~~~~k~g~~~~A~~l~~~m~~~g~~pd~~t~n~Li~ay~~~g~~e~A~~l~~~M~~~g~ 636 (856)
.++..++.+.++|+-|.-.++++.+.+.+ ++++...-.+..+|-+.|...++-+++.+.-+.|+
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 34444555555555555555555544422 44555555555555555555555555555555544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.27 E-value=4.6 Score=34.12 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=27.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003028 540 IVMEVLGHCGYLDEAEAVFAEMRRKNWVPDEPVYGLLVDLWGKAGNVRKAWEWYEAMLQAG 600 (856)
Q Consensus 540 ~ll~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~~~k~g~~~~A~~l~~~m~~~g 600 (856)
..++.+...|.-+...+++.++.+ +-++++...-.+..+|-+.|+..++.+++.+.-+.|
T Consensus 91 lALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 91 KALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 334444444444444444444433 223444444444444555555555555544444444
|
| >d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: SMR domain-like family: Smr domain domain: Nedd4-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.10 E-value=0.44 Score=37.73 Aligned_cols=78 Identities=27% Similarity=0.440 Sum_probs=51.9
Q ss_pred eeccccccchhhHHHHHHHHHHHHHHHHHcCCCCCceeeeeeccccCCcccchHHHHHHHHHHhhcCCCCcccCCCceEE
Q 003028 755 LINLHVMSDGTAVIALSRTLAWFRKQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLHMFSFPFFTENGNSGCF 834 (856)
Q Consensus 755 ~~~~~~l~~g~a~~g~~~~l~~~~~~m~~~g~~Pd~it~i~~l~~~~~~~~~~~l~~a~~~ll~~~~~pf~~~~~~~gc~ 834 (856)
.+|+|.+....|...+.+.+...+..+...+ ....+.+|+|.|.+|. .+.+.++.++..+|......| +..+.|++
T Consensus 3 ~iDLHG~~~~eA~~~l~~~l~~~~~~~~~~~-~~~~l~IItG~G~hS~-~g~~~lk~~V~~~L~~~~~~~--~e~~~G~~ 78 (83)
T d2d9ia1 3 VLDLHGLHVDEALEHLMRVLEKKTEEFKQNG-GKPYLSVITGRGNHSQ-GGVARIKPAVIKYLISHSFRF--SEIKPGCL 78 (83)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEEECCCSGGGT-TCTTCHHHHHHHHHHHTTCCE--ECCSTTCE
T ss_pred eEECCCCCHHHHHHHHHHHHHHHHHhhhhcC-CceEEEEEECCCCCCC-CCcchHHHHHHHHHHHCCCce--ecCCCcEE
Confidence 4678888777776555544443322222222 3456899999999987 556789999999998655554 44566887
Q ss_pred Ee
Q 003028 835 VG 836 (856)
Q Consensus 835 v~ 836 (856)
+-
T Consensus 79 ~V 80 (83)
T d2d9ia1 79 KV 80 (83)
T ss_dssp EE
T ss_pred EE
Confidence 63
|