Citrus Sinensis ID: 003032

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-----
Protein Sequence
MNNNNNNNSSSTPNPNANTNNKDSEEDLAAQPVETVIKPDKSDTLSSAAAAEEEASAKSDDPMDEDSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPAASQGQYPPLL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccEEEEEEEccccccccccccHHHHHcccccHHHccccccEEccccccccccccccccccEEEEEEEcccccccEEEEEEEcccccccEEEEEEcccccccEEEEEEccccEEEEEcccccccccccccccccHHHHcccccEEEEEccccccccccccccccccccccHHHHHHHHccccccccccccEEEEEEEEccccEEEEEcccccccccccccEEEcccccccccccccccccEEEcccccEEEEEEccccccEEEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccEEEcccccccEEEccccccccccccEEccccEEEEccccccccEEEEEEEEccccccccccccccccEEEEEEEEcccccEEEEEcccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHEEEcccccEEEEEEEcccEEEEEcccccccccEEEEccccccccccccccccccEEEEccccccEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEcccccccccHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHHcHccccEEEEEcccccccccHHHHHHHHHccccccccccccccccEEEEEEEcccccHHccccccHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEccccccEEEEEEEEcccccccEEEEEEcccccccEEEEEEcccEEEEEEccccccccEEEEcccHHHHHHHHHHHHHHHHHHccccccEEccccccccccccccHHHHHcccccccccccccEEEEEEEEccccEEEEccccccccccccccEEEccccccccccccHEEEEEEEEccccEEEEEEEcccccEEEEEEEcccccccEEEcccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEcHHHHccccccccccccEEEEEEccccccEEEEEEEEEccccccccccccccccccEEEEEccccccEEEEccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHEccccccEEEEEEcccEEEEEcccccccccEEEEccccccccccccccccccEEEcccccccEEEEEEEcccccccccccEcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccEEEcEEEEEEcccccccccHHHHHHccccHHHEEHHEHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccccccccccHcccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mnnnnnnnssstpnpnantnnkdseedlaaqpvetvikpdksdtlsSAAAAEEeasaksddpmdedsvtpATVFCIRlkqprsnlqhkmsvpelcRNFSAVAWCGKLNAIACASetcaripssnantpfwipihiviperptecavfnviadcprdsvqfiewsptscpRALLIANFYGrvtiwtqpshgpanlvrdascwqrEHEWRQDIAVVTKWLsgvspyrwlsskstsplnakSIFEekflsqnsqtsdrwpnflCVCSVfssgsvqlnwsqwppsqngaaskwfptakgllgagpsgimaadviitdsgamhvagvpivnpsTVVVWEvtpgpgngfqaapktttsngvppslsppkwagfapLAAYLFSWQEYLLSEAKQgrkltdqnfsdaitlhcspvsnfsayvspeaaaqsaatttwgsgvtavafdptrggSVIAVVIVEgqymspydpdegpsitgwrvqrwessvqpVVLHqifgnptssfggqapmqtVWVSkvdtsiptsnfkihqlaaagptcdvwkttdsglekskivsfdpfdlpsdiRSLARIVYSAHGGEIAIALLRggvhifsgpnfapvdnyqisvgsaiaapafsstsccsasvwhdtnkdrtILKIIrvlppavpssqvkansSTWERAIAERFWWSLLVnvdwwdavgctqsaaEDGIVSLNSVIAVLdadfhslpsiqhrqqygpsldRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIesalinpsalvpdpwqasgetlsgidpeamAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAvtagtgsnrnmvasptqssatpaasqgqyppll
Flexible Loop (DISEMBL)
mnnnnnnnssstpnpnanTNNKDSEEDLAAQPVEtvikpdksdTLSSAAAAEEeasaksddpmdedSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLekskivsfdpfdlpsDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRvlppavpssqvkanssTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHavtagtgsnrnMVASptqssatpaasqgqyppll
Low Complexity Region (SEG)
MnnnnnnnssstpnpnantnnKDSEEDLAAQPVETVIKPDKSDTLssaaaaeeeasaKSDDPMDEDSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVasptqssatpaasqGQYPPLL
Disordered region (IsUnstruct)
**********************************************************************ATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLS*************************DRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTP*************************KWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPS**VKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVT*******************************
Disordered Region (DISOPRED)
*********************************************************************PATVFCIRLKQPRS**QHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYR******************************WPNFLCVCSVFSSGSVQLNWSQW*****GAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTT*******LSPPKWAGFAPLAAYLFSWQEYLLSE***********FSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTS**GGQAPMQTVWVSKVDTSIPTSNFKIHQLAA********************VSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSI*H**QYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHA*****************************PP**
Disordered Region (DISEMBL)
************************EEDLAAQPVETVIKP****************************VTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVS************WGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPA***********TWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNM**********************
Disordered Region (DISPRO)
******************************QPV***IKP***************************SVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLS***********************TSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNF***********************KSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVT*******************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNNNNNNNSSSTPNPNANTNNKDSEEDLAAQPVETVIKPDKSDTLSSAAAAEEEASAKSDDPMDEDSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPAASQGQYPPLL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	855	2.2.26 [Sep-21-2011]
F4JGZ1	1278	Mediator of RNA polymeras	yes	no	0.967	0.647	0.800	0.0

>sp|F4JGZ1|MED16_ARATH Mediator of RNA polymerase II transcription subunit 16 OS=Arabidopsis thaliana GN=MED16 PE=1 SV=1

 Score = 1352 bits (3498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 668/834 (80%), Positives = 729/834 (87%), Gaps = 7/834 (0%)

Query: 22  KDSEEDLAAQPVETVIKPD------KSDTLSSAAAAEEEASAKSDDPMDEDSVTPATVFC 75
           +  EE L  +  ET+   D      +   L  +   E+E    S   M+ D V+PATVFC
Sbjct: 30  EKEEEGLQQKQEETIESTDPILVVVEEKLLEKSVDGEKEDDNSSSSNMEIDPVSPATVFC 89

Query: 76  IRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHI 135
           ++LKQP SNL HKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSS ANTPFWIPIHI
Sbjct: 90  VKLKQPNSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKANTPFWIPIHI 149

Query: 136 VIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLV 195
           +IPERPTECAVFNV+AD PRDSVQFIEWSPTSCPRALLIANF+GR+TIWTQP+ G ANLV
Sbjct: 150 LIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPTQGSANLV 209

Query: 196 RDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLSQNSQTSDR 255
            DA+ WQ EHEWRQDIAVVTKWL+G SPYRWLSSK +S  NAKS FEEKFLSQ+S++S R
Sbjct: 210 HDATSWQCEHEWRQDIAVVTKWLTGASPYRWLSSKPSSGTNAKSTFEEKFLSQSSESSAR 269

Query: 256 WPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSG 315
           WPNFLCVCSVFSSGSVQ++WSQWP +Q   A KWF T KGLLGAGPSGIMAAD IITDSG
Sbjct: 270 WPNFLCVCSVFSSGSVQIHWSQWPSNQGSTAPKWFSTKKGLLGAGPSGIMAADAIITDSG 329

Query: 316 AMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLF 375
           AMHVAGVPIVNPST+VVWEVTPGPGNG QA PK +T + VPPSLS   W GFAPLAAYLF
Sbjct: 330 AMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSSWTGFAPLAAYLF 389

Query: 376 SWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAV 435
           SWQEYL+SE KQG+K +DQ+ SDAI+L CSPVSNFSAYVSPEAAAQSAATTTWGSGVTAV
Sbjct: 390 SWQEYLISEIKQGKKPSDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAV 449

Query: 436 AFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSF 495
           AFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTS+F
Sbjct: 450 AFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSNF 509

Query: 496 GGQAPMQTVWVSKVDTSI-PTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLP 554
           GGQ P QTVWVS+VD SI PT +FK HQ+AAAGP+ D  K  DSG EK+  V FDPFDLP
Sbjct: 510 GGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPDSGDEKANKVVFDPFDLP 569

Query: 555 SDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCC 614
           SDIR+LARIVYSAHGGEIAIA LRGGVHIFSGP F+PV+NYQI+VGSAIAAPAFS TSCC
Sbjct: 570 SDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQINVGSAIAAPAFSPTSCC 629

Query: 615 SASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVG 674
           SASVWHD  KD  +LKIIRVLPPA+P +Q K + STWERAIAERFWWSLLV VDWWDAVG
Sbjct: 630 SASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIAERFWWSLLVGVDWWDAVG 689

Query: 675 CTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMV 734
           CTQSAAEDGIVSLNSVIAV+DADFHSLPS QHRQQYGP+LDRIKCRLLEGTNAQEVRAMV
Sbjct: 690 CTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRLLEGTNAQEVRAMV 749

Query: 735 LDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYV 794
           LDMQARLLLDMLGKGIESAL+NPSALV +PW+  GET++GI+PEAMAV+PALV+SIQAYV
Sbjct: 750 LDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETITGINPEAMAVDPALVSSIQAYV 809

Query: 795 DAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPAASQ 848
           DAVLDLASHFITRLRRYASFCRTLASHA +AGTGSNRN V SPTQ++++PA  Q
Sbjct: 810 DAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNNVTSPTQNASSPATPQ 863

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the regulation of the circadian clock, in the control of flowering time, in freezing- and osmotic-stress tolerance and in both salicylic acid- and jasmonate-mediated defense gene expression.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	855
255556001	1255	conserved hypothetical protein [Ricinus	0.989	0.674	0.859	0.0
224125276	820	predicted protein [Populus trichocarpa]	0.921	0.960	0.872	0.0
449457823	1220	PREDICTED: mediator of RNA polymerase II	0.918	0.643	0.866	0.0
356546243	1244	PREDICTED: uncharacterized protein LOC10	0.913	0.627	0.863	0.0
334186364	1267	sensitive to freezing 6 protein [Arabido	0.969	0.654	0.801	0.0
240255752	1278	sensitive to freezing 6 protein [Arabido	0.967	0.647	0.800	0.0
297809669	1219	hypothetical protein ARALYDRAFT_490126 [	0.955	0.670	0.804	0.0
358346665	1245	hypothetical protein MTR_084s0009 [Medic	0.930	0.639	0.830	0.0
224079253	1328	predicted protein [Populus trichocarpa]	0.921	0.593	0.791	0.0
356549357	1189	PREDICTED: uncharacterized protein LOC10	0.915	0.658	0.835	0.0

>gi|255556001|ref|XP_002519035.1| conserved hypothetical protein [Ricinus communis] gi|223541698|gb|EEF43246.1| conserved hypothetical protein [Ricinus communis]

 Score = 1456 bits (3770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 729/848 (85%), Positives = 777/848 (91%), Gaps = 2/848 (0%)

Query: 4   NNNNNSSSTPNPNANTNNKDSEEDLAAQPVETVIKPDKSDT-LSSAAAAEEEASAKSDDP 62
           NN  +  S    +    NK+ EE+   Q +E V K   SD       ++EE++  K DDP
Sbjct: 2   NNQQHQQSQIVGSGTGGNKEPEEESVGQSLEIVAKGAGSDKPAGEPVSSEEDSVEKPDDP 61

Query: 63  MDEDSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPS 122
           M+EDSV+PATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPS
Sbjct: 62  MEEDSVSPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPS 121

Query: 123 SNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVT 182
           SNAN PFWIPIHIVIPERPTECAVFNVIAD PRDSVQFIEWSPTSCPRALLIANF+GR+T
Sbjct: 122 SNANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRIT 181

Query: 183 IWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFE 242
           IWTQPS GP N+VRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKS+S  N+KS FE
Sbjct: 182 IWTQPSQGPVNMVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSSSSTNSKSTFE 241

Query: 243 EKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPS 302
           EKFLSQ SQTS RWPNFLCVCSVFSSGSVQL+WSQWPPS+  A  +WF T+KGLLGAGPS
Sbjct: 242 EKFLSQQSQTSARWPNFLCVCSVFSSGSVQLHWSQWPPSRTNATPEWFCTSKGLLGAGPS 301

Query: 303 GIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPP 362
           GIMAAD I+TDSGAMHVAGVPIVNPSTVVVWEVTPG G+GFQA PKT+ SNGVPPSL+PP
Sbjct: 302 GIMAADAIVTDSGAMHVAGVPIVNPSTVVVWEVTPGLGHGFQATPKTSISNGVPPSLNPP 361

Query: 363 KWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQS 422
            W+GFAPLAAYLFSWQEYL+SEAKQGRK TDQ+FS+ ++LHCSPVSNFSAYVSPEAAAQS
Sbjct: 362 NWSGFAPLAAYLFSWQEYLISEAKQGRKHTDQDFSNTVSLHCSPVSNFSAYVSPEAAAQS 421

Query: 423 AATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPV 482
           AATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESS+QPV
Sbjct: 422 AATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQPV 481

Query: 483 VLHQIFGNPTSSFGGQAPMQTVWVSKVDTSI-PTSNFKIHQLAAAGPTCDVWKTTDSGLE 541
           VLHQIFGNPTSSFGGQAPMQTVWVSKVDTSI PT++FK HQ  +AGP  D  K +DSG+E
Sbjct: 482 VLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPPTNDFKNHQTVSAGPAPDARKASDSGVE 541

Query: 542 KSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGS 601
           K+K ++FDPFDLPSD+RSLARIVYSAHGGEIAIA LRGGVHIFSGPNF PVD+YQI+VGS
Sbjct: 542 KAKSLTFDPFDLPSDVRSLARIVYSAHGGEIAIAFLRGGVHIFSGPNFTPVDSYQINVGS 601

Query: 602 AIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWW 661
           AIAAPAFSSTSCCSASVWHDT+KDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWW
Sbjct: 602 AIAAPAFSSTSCCSASVWHDTSKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWW 661

Query: 662 SLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRL 721
           SLLV VDWWDAVGCTQSAAED IVSLNSVIAVLDADFHSLPS QHRQQYGPSLDRIKCRL
Sbjct: 662 SLLVGVDWWDAVGCTQSAAEDNIVSLNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRL 721

Query: 722 LEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMA 781
           LEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVP+PWQASGETLSGIDPEAMA
Sbjct: 722 LEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPEPWQASGETLSGIDPEAMA 781

Query: 782 VEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSS 841
           VEP+LV SIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNR+MV SPTQS+
Sbjct: 782 VEPSLVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRSMVTSPTQSA 841

Query: 842 ATPAASQG 849
           A+PA SQG
Sbjct: 842 ASPATSQG 849

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125276|ref|XP_002329765.1| predicted protein [Populus trichocarpa] gi|222870827|gb|EEF07958.1| predicted protein [Populus trichocarpa]

 Score = 1374 bits (3557), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 692/793 (87%), Positives = 733/793 (92%), Gaps = 5/793 (0%)

Query: 58  KSDDPMDEDSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETC 117
           K DDPM+EDSV+PATVFCIRLKQPRSNLQHKMSVPELCR FSAVAWCGKLNAIACASETC
Sbjct: 31  KVDDPMEEDSVSPATVFCIRLKQPRSNLQHKMSVPELCRQFSAVAWCGKLNAIACASETC 90

Query: 118 ARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANF 177
           ARIPSSNAN PFWIPIH+VIPERPTECAVFNVIAD PRDSVQFIEWSPTS  RALLIANF
Sbjct: 91  ARIPSSNANPPFWIPIHVVIPERPTECAVFNVIADSPRDSVQFIEWSPTSYSRALLIANF 150

Query: 178 YGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNA 237
           +GR TIWTQPS GP+NLVRDASCWQREHEWRQDIAVVTKWLS VSPYRWLSSKS++P ++
Sbjct: 151 HGRTTIWTQPSQGPSNLVRDASCWQREHEWRQDIAVVTKWLSSVSPYRWLSSKSSTPTSS 210

Query: 238 KSIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLL 297
           KS FEEKFLSQ+SQTS RWPNFLCVCSVFSSGSVQL+WS   PSQN  + KWF T+KGLL
Sbjct: 211 KSAFEEKFLSQHSQTSARWPNFLCVCSVFSSGSVQLHWS---PSQNNTSPKWFCTSKGLL 267

Query: 298 GAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPP 357
           GAGPSGIMAAD IITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQA P  +  NGVPP
Sbjct: 268 GAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPMASVGNGVPP 327

Query: 358 SLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPE 417
           S+ PP W+GFAPLAAYLF+WQE+L+SE KQG+K TD++F+D ITLHCSPVSNFSAYVSPE
Sbjct: 328 SVKPPNWSGFAPLAAYLFNWQEHLMSEVKQGKKQTDEDFTDTITLHCSPVSNFSAYVSPE 387

Query: 418 AAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWES 477
           AAAQSAATTTWGSGV+AVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGP ITGWRVQRWES
Sbjct: 388 AAAQSAATTTWGSGVSAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPLITGWRVQRWES 447

Query: 478 SVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSI-PTSNFKIHQLAAAGPTCDVWKTT 536
           SVQPVVLH IFGNPTS FGGQAPMQTVWVSKVDTSI PT++FK +Q AAAGP  DV KT+
Sbjct: 448 SVQPVVLHPIFGNPTSGFGGQAPMQTVWVSKVDTSIPPTNDFKNYQPAAAGPISDVRKTS 507

Query: 537 DSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQ 596
           DSG EK+K V FDP DLPSD+R+LARIVYSAHGGEIA+A L GGVHIFSG NF  VDN+Q
Sbjct: 508 DSGAEKTKRVIFDPSDLPSDVRTLARIVYSAHGGEIAVAFLGGGVHIFSGTNFTLVDNHQ 567

Query: 597 ISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIA 656
           I+VGS IAAPAFSSTSCCSASVWHDT+KD T+LKIIRVLPPAVPSSQVKANS+ WERAIA
Sbjct: 568 INVGSTIAAPAFSSTSCCSASVWHDTSKDHTVLKIIRVLPPAVPSSQVKANSAIWERAIA 627

Query: 657 E-RFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLD 715
           E RFWWSLLV VDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLP+ QHRQQYGPSLD
Sbjct: 628 ESRFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPTSQHRQQYGPSLD 687

Query: 716 RIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGI 775
           RIKCRLLEGTNAQEVRAMVLDMQARLLLDMLG+GIESALINPSALV +PWQASGETLSGI
Sbjct: 688 RIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGRGIESALINPSALVSEPWQASGETLSGI 747

Query: 776 DPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVA 835
           DPEAM VEP LV SIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMV 
Sbjct: 748 DPEAMTVEPNLVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVT 807

Query: 836 SPTQSSATPAASQ 848
           SPTQSSA+PA SQ
Sbjct: 808 SPTQSSASPAPSQ 820

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457823|ref|XP_004146647.1| PREDICTED: mediator of RNA polymerase II transcription subunit 16-like [Cucumis sativus]

 Score = 1367 bits (3537), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 682/787 (86%), Positives = 727/787 (92%), Gaps = 2/787 (0%)

Query: 66  DSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNA 125
           D VTPATVF I+LKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNA
Sbjct: 28  DLVTPATVFRIKLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNA 87

Query: 126 NTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWT 185
           N PFWIPIHIVIPERPTECAVFNVIAD PRDSVQFIEWSPTSCPRALLIANF+GR TIWT
Sbjct: 88  NPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRTTIWT 147

Query: 186 QPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKF 245
           QPS GPANLVRDASCWQ EHEWRQDIAVVTKWLSG+S YRWLSSKS S  +  + FEEKF
Sbjct: 148 QPSRGPANLVRDASCWQLEHEWRQDIAVVTKWLSGLSAYRWLSSKSNSSNSKPN-FEEKF 206

Query: 246 LSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIM 305
           L Q SQTS RWPNFLCVCSVFSSGSVQL+WSQWPPSQN +  KWF T+KGLLGAGPSGIM
Sbjct: 207 LPQQSQTSARWPNFLCVCSVFSSGSVQLHWSQWPPSQNSSPPKWFCTSKGLLGAGPSGIM 266

Query: 306 AADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWA 365
           AAD IITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQA PKTTT+NGVP  L+PP W+
Sbjct: 267 AADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPKTTTNNGVPAPLNPPNWS 326

Query: 366 GFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAAT 425
           GFAPLAAYLFSWQE+LLSE KQG+K TDQ+ +D I LHCSPVSNFSAYVSPEAAAQSA T
Sbjct: 327 GFAPLAAYLFSWQEFLLSELKQGKKQTDQDVNDTIPLHCSPVSNFSAYVSPEAAAQSATT 386

Query: 426 TTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLH 485
           TTWGSGVTAVAFDPTRGGSVIA+VIVEGQYMSPYDPDEGPSI+GWRVQRWESS+QPVVLH
Sbjct: 387 TTWGSGVTAVAFDPTRGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLH 446

Query: 486 QIFGNPTSSFGGQAPMQTVWVSKVDTSI-PTSNFKIHQLAAAGPTCDVWKTTDSGLEKSK 544
           QIFGNPT+SF GQAP QTVW+SKVDTSI PTS+FK +Q A +GP  D+ K + + ++K+K
Sbjct: 447 QIFGNPTASFSGQAPTQTVWLSKVDTSISPTSDFKSNQSAVSGPNSDLRKLSGAYIDKAK 506

Query: 545 IVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIA 604
            V FDPFDLPSD+R+LARIVYSAHGGEIA+A L GGVHIFSGPNFAPV+NYQI+VG AIA
Sbjct: 507 KVCFDPFDLPSDVRTLARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIA 566

Query: 605 APAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLL 664
           APAFSSTSCCSASVWHD NKD T+L+IIRVLPPA PS+Q+KANSSTWERAIAERFWWSLL
Sbjct: 567 APAFSSTSCCSASVWHDVNKDCTMLRIIRVLPPAAPSNQLKANSSTWERAIAERFWWSLL 626

Query: 665 VNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEG 724
           V VDWWDAVGCTQSAAEDGIVS NSVIAVLDADFHSLPS QHRQQYGPSLDRIKCRLLEG
Sbjct: 627 VGVDWWDAVGCTQSAAEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEG 686

Query: 725 TNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEP 784
           TNAQEVRAMVLDMQARLLLDMLGKGIESALINPSAL+ +PW ASGETLSGIDPEAMAVEP
Sbjct: 687 TNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEP 746

Query: 785 ALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATP 844
           AL+ SIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRN+VASPT SSA+P
Sbjct: 747 ALIPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNIVASPTPSSASP 806

Query: 845 AASQGQY 851
           A SQG++
Sbjct: 807 ATSQGEF 813

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546243|ref|XP_003541539.1| PREDICTED: uncharacterized protein LOC100793949 [Glycine max]

 Score = 1365 bits (3534), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 676/783 (86%), Positives = 720/783 (91%), Gaps = 2/783 (0%)

Query: 68  VTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANT 127
           V PATVF IRLKQPRSNL HKMSVPELCRNFSAV+WCGKLNAIACA+ETCARIPSS AN 
Sbjct: 68  VNPATVFSIRLKQPRSNLLHKMSVPELCRNFSAVSWCGKLNAIACAAETCARIPSSTANP 127

Query: 128 PFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQP 187
           PFWIPIHIVIPERPTECAVFNVIAD PRDSVQFIEWSP+SCPRALLIANF+GRVTIWTQP
Sbjct: 128 PFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPSSCPRALLIANFHGRVTIWTQP 187

Query: 188 SHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLS 247
             GPANLV D SCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKS++P N+K  FEEK+LS
Sbjct: 188 PQGPANLVHDTSCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSSAPANSKLTFEEKYLS 247

Query: 248 QNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAA 307
           Q SQTS RWPNFLCVCSVFSSGSVQL+WSQWPP+QNG   KWF T+KGLLG GPSGIMA 
Sbjct: 248 QQSQTSARWPNFLCVCSVFSSGSVQLHWSQWPPTQNGTTPKWFCTSKGLLGCGPSGIMAG 307

Query: 308 DVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGF 367
           D IITDSGAMHVAGVPIVNPST+VVWEV PGPGNGFQ  PKT+T+ GVPP LSPP W GF
Sbjct: 308 DAIITDSGAMHVAGVPIVNPSTIVVWEVAPGPGNGFQVTPKTSTTCGVPP-LSPPNWDGF 366

Query: 368 APLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTT 427
           A LAAYLFSWQ+YLLSEAKQGRK TDQN  DA+ L+CSPVSNFSAYVSPEAAAQSAATTT
Sbjct: 367 AALAAYLFSWQDYLLSEAKQGRKQTDQNLVDAVPLYCSPVSNFSAYVSPEAAAQSAATTT 426

Query: 428 WGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQI 487
           WGSGVTAVAFDPTR GSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESS+Q VVLH I
Sbjct: 427 WGSGVTAVAFDPTRAGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQHVVLHPI 486

Query: 488 FGNPTSSFGGQAPMQTVWVSKVDTSIP-TSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIV 546
           FGNPTSS GGQ PMQTVW SKVD SIP T++FK HQ  A G + DV K ++S  +KSK V
Sbjct: 487 FGNPTSSMGGQPPMQTVWQSKVDLSIPPTNDFKNHQSPAIGMSSDVQKVSESVSDKSKRV 546

Query: 547 SFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAP 606
           +FDPFDLPSD+R+LAR+VYSAHGGEIAIA LRGGVH+FSGPNF PVDNYQI+VGSAIAAP
Sbjct: 547 NFDPFDLPSDVRALARVVYSAHGGEIAIAFLRGGVHVFSGPNFTPVDNYQINVGSAIAAP 606

Query: 607 AFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVN 666
           AFSSTSCCSASVWHD++K+ TIL+IIRVLPP++P SQ KANSSTWERAIAERFWWSLLV+
Sbjct: 607 AFSSTSCCSASVWHDSSKNCTILRIIRVLPPSIPISQAKANSSTWERAIAERFWWSLLVS 666

Query: 667 VDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTN 726
           VDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPS+QHRQQYGPSLDRIKCRLLEG+N
Sbjct: 667 VDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSVQHRQQYGPSLDRIKCRLLEGSN 726

Query: 727 AQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPAL 786
           AQEVRAMVLDMQARLLLDMLGKGIESALIN SALVP+ WQASGETLS IDPE+MAVEPAL
Sbjct: 727 AQEVRAMVLDMQARLLLDMLGKGIESALINSSALVPELWQASGETLSSIDPESMAVEPAL 786

Query: 787 VASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPAA 846
           + SIQAYVD+VLDLASHFITRLRRYASFCRTLASHAVTAG+GSNRNMVASPTQSSATPA 
Sbjct: 787 IPSIQAYVDSVLDLASHFITRLRRYASFCRTLASHAVTAGSGSNRNMVASPTQSSATPAT 846

Query: 847 SQG 849
           SQG
Sbjct: 847 SQG 849

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186364|ref|NP_001190676.1| sensitive to freezing 6 protein [Arabidopsis thaliana] gi|332657042|gb|AEE82442.1| sensitive to freezing 6 protein [Arabidopsis thaliana]

 Score = 1355 bits (3506), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 670/836 (80%), Positives = 731/836 (87%), Gaps = 7/836 (0%)

Query: 22  KDSEEDLAAQPVETVIKPD------KSDTLSSAAAAEEEASAKSDDPMDEDSVTPATVFC 75
           +  EE L  +  ET+   D      +   L  +   E+E    S   M+ D V+PATVFC
Sbjct: 30  EKEEEGLQQKQEETIESTDPILVVVEEKLLEKSVDGEKEDDNSSSSNMEIDPVSPATVFC 89

Query: 76  IRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHI 135
           ++LKQP SNL HKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSS ANTPFWIPIHI
Sbjct: 90  VKLKQPNSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKANTPFWIPIHI 149

Query: 136 VIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLV 195
           +IPERPTECAVFNV+AD PRDSVQFIEWSPTSCPRALLIANF+GR+TIWTQP+ G ANLV
Sbjct: 150 LIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPTQGSANLV 209

Query: 196 RDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLSQNSQTSDR 255
            DA+ WQ EHEWRQDIAVVTKWL+G SPYRWLSSK +S  NAKS FEEKFLSQ+S++S R
Sbjct: 210 HDATSWQCEHEWRQDIAVVTKWLTGASPYRWLSSKPSSGTNAKSTFEEKFLSQSSESSAR 269

Query: 256 WPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSG 315
           WPNFLCVCSVFSSGSVQ++WSQWP +Q   A KWF T KGLLGAGPSGIMAAD IITDSG
Sbjct: 270 WPNFLCVCSVFSSGSVQIHWSQWPSNQGSTAPKWFSTKKGLLGAGPSGIMAADAIITDSG 329

Query: 316 AMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLF 375
           AMHVAGVPIVNPST+VVWEVTPGPGNG QA PK +T + VPPSLS   W GFAPLAAYLF
Sbjct: 330 AMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSSWTGFAPLAAYLF 389

Query: 376 SWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAV 435
           SWQEYL+SE KQG+K +DQ+ SDAI+L CSPVSNFSAYVSPEAAAQSAATTTWGSGVTAV
Sbjct: 390 SWQEYLISEIKQGKKPSDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAV 449

Query: 436 AFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSF 495
           AFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTS+F
Sbjct: 450 AFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSNF 509

Query: 496 GGQAPMQTVWVSKVDTSI-PTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLP 554
           GGQ P QTVWVS+VD SI PT +FK HQ+AAAGP+ D  K  DSG EK+  V FDPFDLP
Sbjct: 510 GGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPDSGDEKANKVVFDPFDLP 569

Query: 555 SDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCC 614
           SDIR+LARIVYSAHGGEIAIA LRGGVHIFSGP F+PV+NYQI+VGSAIAAPAFS TSCC
Sbjct: 570 SDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQINVGSAIAAPAFSPTSCC 629

Query: 615 SASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVG 674
           SASVWHD  KD  +LKIIRVLPPA+P +Q K + STWERAIAERFWWSLLV VDWWDAVG
Sbjct: 630 SASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIAERFWWSLLVGVDWWDAVG 689

Query: 675 CTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMV 734
           CTQSAAEDGIVSLNSVIAV+DADFHSLPS QHRQQYGP+LDRIKCRLLEGTNAQEVRAMV
Sbjct: 690 CTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRLLEGTNAQEVRAMV 749

Query: 735 LDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYV 794
           LDMQARLLLDMLGKGIESAL+NPSALV +PW+  GET++GI+PEAMAV+PALV+SIQAYV
Sbjct: 750 LDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETITGINPEAMAVDPALVSSIQAYV 809

Query: 795 DAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPAASQGQ 850
           DAVLDLASHFITRLRRYASFCRTLASHA +AGTGSNRN V SPTQ++++PA  QGQ
Sbjct: 810 DAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNNVTSPTQNASSPATPQGQ 865

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255752|ref|NP_192401.5| sensitive to freezing 6 protein [Arabidopsis thaliana] gi|395406812|sp|F4JGZ1.1|MED16_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 16; AltName: Full=Protein SENSITIVE TO FREEZING 6 gi|332657041|gb|AEE82441.1| sensitive to freezing 6 protein [Arabidopsis thaliana]

 Score = 1352 bits (3498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 668/834 (80%), Positives = 729/834 (87%), Gaps = 7/834 (0%)

Query: 22  KDSEEDLAAQPVETVIKPD------KSDTLSSAAAAEEEASAKSDDPMDEDSVTPATVFC 75
           +  EE L  +  ET+   D      +   L  +   E+E    S   M+ D V+PATVFC
Sbjct: 30  EKEEEGLQQKQEETIESTDPILVVVEEKLLEKSVDGEKEDDNSSSSNMEIDPVSPATVFC 89

Query: 76  IRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHI 135
           ++LKQP SNL HKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSS ANTPFWIPIHI
Sbjct: 90  VKLKQPNSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKANTPFWIPIHI 149

Query: 136 VIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLV 195
           +IPERPTECAVFNV+AD PRDSVQFIEWSPTSCPRALLIANF+GR+TIWTQP+ G ANLV
Sbjct: 150 LIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPTQGSANLV 209

Query: 196 RDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLSQNSQTSDR 255
            DA+ WQ EHEWRQDIAVVTKWL+G SPYRWLSSK +S  NAKS FEEKFLSQ+S++S R
Sbjct: 210 HDATSWQCEHEWRQDIAVVTKWLTGASPYRWLSSKPSSGTNAKSTFEEKFLSQSSESSAR 269

Query: 256 WPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSG 315
           WPNFLCVCSVFSSGSVQ++WSQWP +Q   A KWF T KGLLGAGPSGIMAAD IITDSG
Sbjct: 270 WPNFLCVCSVFSSGSVQIHWSQWPSNQGSTAPKWFSTKKGLLGAGPSGIMAADAIITDSG 329

Query: 316 AMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLF 375
           AMHVAGVPIVNPST+VVWEVTPGPGNG QA PK +T + VPPSLS   W GFAPLAAYLF
Sbjct: 330 AMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSSWTGFAPLAAYLF 389

Query: 376 SWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAV 435
           SWQEYL+SE KQG+K +DQ+ SDAI+L CSPVSNFSAYVSPEAAAQSAATTTWGSGVTAV
Sbjct: 390 SWQEYLISEIKQGKKPSDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAV 449

Query: 436 AFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSF 495
           AFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTS+F
Sbjct: 450 AFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSNF 509

Query: 496 GGQAPMQTVWVSKVDTSI-PTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLP 554
           GGQ P QTVWVS+VD SI PT +FK HQ+AAAGP+ D  K  DSG EK+  V FDPFDLP
Sbjct: 510 GGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPDSGDEKANKVVFDPFDLP 569

Query: 555 SDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCC 614
           SDIR+LARIVYSAHGGEIAIA LRGGVHIFSGP F+PV+NYQI+VGSAIAAPAFS TSCC
Sbjct: 570 SDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQINVGSAIAAPAFSPTSCC 629

Query: 615 SASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVG 674
           SASVWHD  KD  +LKIIRVLPPA+P +Q K + STWERAIAERFWWSLLV VDWWDAVG
Sbjct: 630 SASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIAERFWWSLLVGVDWWDAVG 689

Query: 675 CTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMV 734
           CTQSAAEDGIVSLNSVIAV+DADFHSLPS QHRQQYGP+LDRIKCRLLEGTNAQEVRAMV
Sbjct: 690 CTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRLLEGTNAQEVRAMV 749

Query: 735 LDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYV 794
           LDMQARLLLDMLGKGIESAL+NPSALV +PW+  GET++GI+PEAMAV+PALV+SIQAYV
Sbjct: 750 LDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETITGINPEAMAVDPALVSSIQAYV 809

Query: 795 DAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPAASQ 848
           DAVLDLASHFITRLRRYASFCRTLASHA +AGTGSNRN V SPTQ++++PA  Q
Sbjct: 810 DAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNNVTSPTQNASSPATPQ 863

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809669|ref|XP_002872718.1| hypothetical protein ARALYDRAFT_490126 [Arabidopsis lyrata subsp. lyrata] gi|297318555|gb|EFH48977.1| hypothetical protein ARALYDRAFT_490126 [Arabidopsis lyrata subsp. lyrata]

 Score = 1345 bits (3482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 664/825 (80%), Positives = 724/825 (87%), Gaps = 8/825 (0%)

Query: 25  EEDLAAQPVETVIKPDKSDTLSSAAAAEEEASAKSDDPMDEDSVTPATVFCIRLKQPRSN 84
           EE  +  P+  V +   +D        E+E    S   M+ D V+PATVFC++LKQP S+
Sbjct: 34  EETESTDPIVVVAEEKSAD-------GEKEDDNTSTSNMEIDPVSPATVFCVKLKQPNSD 86

Query: 85  LQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTEC 144
           L HKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSS ANTPFWIPIHI+IPERPTEC
Sbjct: 87  LLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKANTPFWIPIHILIPERPTEC 146

Query: 145 AVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQRE 204
           AVFNV+AD PRDSVQFIEWSP SCPRALLIANF+GR+TIWTQP+ G ANLV DA+ WQ E
Sbjct: 147 AVFNVVADSPRDSVQFIEWSPISCPRALLIANFHGRITIWTQPTQGSANLVHDATSWQCE 206

Query: 205 HEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLSQNSQTSDRWPNFLCVCS 264
           HEWRQDIAVVTKWL+G SPYRWLSSK +S  NAKS FEEKFLSQ+S++S RWPNFLCVCS
Sbjct: 207 HEWRQDIAVVTKWLAGASPYRWLSSKPSSGTNAKSTFEEKFLSQSSESSARWPNFLCVCS 266

Query: 265 VFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPI 324
           VFSSGSVQL+WSQWP +Q   A KWF T KGLLGAGPSGIMAAD IITDSGAMHVAGVPI
Sbjct: 267 VFSSGSVQLHWSQWPSNQGCTAPKWFSTKKGLLGAGPSGIMAADAIITDSGAMHVAGVPI 326

Query: 325 VNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSE 384
           VNPST+VVWEVTPGPGNG QA PK +T + VPPSLS   W GFAPLAAYLFSWQEYL+SE
Sbjct: 327 VNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSSWTGFAPLAAYLFSWQEYLISE 386

Query: 385 AKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGS 444
            KQG+K TDQ+ SDAI+L CSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGS
Sbjct: 387 IKQGKKPTDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGS 446

Query: 445 VIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTV 504
           VIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTS+FGGQ P QTV
Sbjct: 447 VIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSNFGGQVPTQTV 506

Query: 505 WVSKVDTSI-PTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARI 563
           WVS+VD SI PT +FK HQ+AAAGP+ D  K  DSG EK+  V FDPFDLPSDIR+LARI
Sbjct: 507 WVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPDSGDEKANKVVFDPFDLPSDIRTLARI 566

Query: 564 VYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTN 623
           VYSAHGGEIAIA LRGGVHIFSGP F+PV+NYQI+VGSAIAAPAFS TSCCSASVWHD  
Sbjct: 567 VYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQINVGSAIAAPAFSPTSCCSASVWHDAA 626

Query: 624 KDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDG 683
           KD  +LKIIRVLPPA+P +Q K + STWERAI ERFWWSLLV VDWWDAVGCTQSAAEDG
Sbjct: 627 KDCAMLKIIRVLPPALPRNQSKVDQSTWERAIVERFWWSLLVGVDWWDAVGCTQSAAEDG 686

Query: 684 IVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLL 743
           IVSLNSVIAV+DADFHSLPS QHRQQYGP+LDRIKCRLLEGTNAQEVRAMVLDMQARLLL
Sbjct: 687 IVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRLLEGTNAQEVRAMVLDMQARLLL 746

Query: 744 DMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASH 803
           DMLGKGIESAL+NPSALV +PW+  GET++GI+PEAMAV+PALV+SIQAYVDAVLDLASH
Sbjct: 747 DMLGKGIESALVNPSALVFEPWRVDGETITGINPEAMAVDPALVSSIQAYVDAVLDLASH 806

Query: 804 FITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPAASQ 848
           FITRLRRYASFCRTLASHA +AGTGSNRN+  SPTQ++++PA  Q
Sbjct: 807 FITRLRRYASFCRTLASHAASAGTGSNRNIGTSPTQNASSPATPQ 851

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346665|ref|XP_003637386.1| hypothetical protein MTR_084s0009 [Medicago truncatula] gi|355503321|gb|AES84524.1| hypothetical protein MTR_084s0009 [Medicago truncatula]

 Score = 1344 bits (3479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 663/798 (83%), Positives = 716/798 (89%), Gaps = 2/798 (0%)

Query: 53  EEASAKSDDPMDEDSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIAC 112
           EE  +  D PM+EDSV PATVF IRL+Q ++NL HKMSVPELCRNFSAV+WCGKLNAIAC
Sbjct: 48  EENKSPIDQPMEEDSVNPATVFTIRLRQSKANLMHKMSVPELCRNFSAVSWCGKLNAIAC 107

Query: 113 ASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRAL 172
           A+ETCARIPSS AN PFWIPIHIVIPERPTECAVFNVIAD PRDSVQFIEWSPTSCPRAL
Sbjct: 108 AAETCARIPSSTANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRAL 167

Query: 173 LIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKST 232
           LIANF+GRVTIWTQPS GPANLVRDASCW+REHEWRQDIAV TKWLSGVSPYRWLSSKS+
Sbjct: 168 LIANFHGRVTIWTQPSQGPANLVRDASCWRREHEWRQDIAVATKWLSGVSPYRWLSSKSS 227

Query: 233 SPLNAKSIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPT 292
           +  ++K  FEEKFLSQ SQTS RWPNFLCVCSVFSSGSVQL+WSQWPP+Q  +  +WF T
Sbjct: 228 ATPDSKLTFEEKFLSQQSQTSARWPNFLCVCSVFSSGSVQLHWSQWPPNQKDSTPRWFHT 287

Query: 293 AKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTS 352
           +KGLLG GPSGIMA D IITDSGAMHVAGVPIVNPST+VVWEVTPGPGNGFQ+ P T+T 
Sbjct: 288 SKGLLGCGPSGIMAGDAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGFQSCPMTSTK 347

Query: 353 NGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSA 412
           +GVPP + PP W GFAPLAAYLF WQ++LLS AKQG+KLT++N  D++ L+CSPVSNFSA
Sbjct: 348 SGVPPHI-PPNWDGFAPLAAYLFCWQDHLLSLAKQGKKLTEKNIGDSVPLYCSPVSNFSA 406

Query: 413 YVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRV 472
           YVSPEAAAQSAATTTWGSGVTAVAFDPTR GSVIAVVIVEGQYMSPYDPDEGP+ITGWRV
Sbjct: 407 YVSPEAAAQSAATTTWGSGVTAVAFDPTRAGSVIAVVIVEGQYMSPYDPDEGPTITGWRV 466

Query: 473 QRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSI-PTSNFKIHQLAAAGPTCD 531
           QRWESS++ VVLH IFGNPTSS GGQ PMQTVW SKVD SI PT +F+ H+    G   D
Sbjct: 467 QRWESSLEQVVLHPIFGNPTSSMGGQPPMQTVWQSKVDLSILPTDDFRNHRSPTIGMATD 526

Query: 532 VWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAP 591
           V K ++   +KSK V+FDPFDLPSD+R+LARIVYSAHGGEIAIA LRGGVHIFSGPNF  
Sbjct: 527 VQKVSELISDKSKRVNFDPFDLPSDVRTLARIVYSAHGGEIAIAFLRGGVHIFSGPNFEQ 586

Query: 592 VDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTW 651
           VDNYQI+VGSAIAAPAFSSTSCCSASVWHDT  + TILKIIRVLPP VP SQ KANSSTW
Sbjct: 587 VDNYQITVGSAIAAPAFSSTSCCSASVWHDTINNYTILKIIRVLPPPVPISQAKANSSTW 646

Query: 652 ERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYG 711
           ERAIAERFWWSLLV VDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPS+QHRQQYG
Sbjct: 647 ERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSVQHRQQYG 706

Query: 712 PSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGET 771
           PSLDRIKCRLLEG+NAQEVRAMVLDMQARLLLDMLG+GIESALI+P+  VP+ WQASGET
Sbjct: 707 PSLDRIKCRLLEGSNAQEVRAMVLDMQARLLLDMLGRGIESALIDPTQFVPELWQASGET 766

Query: 772 LSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNR 831
           LS ID E MAVEPALV  +QAYVDA+LDLASHFITRLRRYASFCRTLASHAVTAGTGSNR
Sbjct: 767 LSNIDSETMAVEPALVPCVQAYVDAILDLASHFITRLRRYASFCRTLASHAVTAGTGSNR 826

Query: 832 NMVASPTQSSATPAASQG 849
           NMVASPTQSSATPA SQG
Sbjct: 827 NMVASPTQSSATPATSQG 844

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079253|ref|XP_002305810.1| predicted protein [Populus trichocarpa] gi|222848774|gb|EEE86321.1| predicted protein [Populus trichocarpa]

 Score = 1332 bits (3448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 690/872 (79%), Positives = 729/872 (83%), Gaps = 84/872 (9%)

Query: 58  KSDDPMDEDSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETC 117
           K DD M+EDSV+PATVFCIRLKQPRSNLQHKMSVPELCR FSAVAWCGKLNAIACASETC
Sbjct: 48  KLDDSMEEDSVSPATVFCIRLKQPRSNLQHKMSVPELCRKFSAVAWCGKLNAIACASETC 107

Query: 118 ARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANF 177
           ARIPSSNAN PFWIPIH+VIPERPTECAVFNVIAD PRDSVQFIEWSPTSCPRALLIANF
Sbjct: 108 ARIPSSNANPPFWIPIHLVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANF 167

Query: 178 YGRVTIWTQPSH--------GPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSS 229
           +GR+TIWTQPS          P+NLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSS
Sbjct: 168 HGRITIWTQPSQLTSYLVVQCPSNLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSS 227

Query: 230 KSTSPLNAKSIFEEKFLSQNSQTS-------------------------DRWPNFLCVCS 264
           KS++P N+KS FEEKFLSQ+SQTS                          RWPNFLCVCS
Sbjct: 228 KSSTPTNSKSAFEEKFLSQHSQTSVSAKNLFIIGSTSNYCIVNVPRKMQSRWPNFLCVCS 287

Query: 265 VFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPI 324
           VFSSGSVQL+WSQWPPSQN  + KWF T+KGLLGAGPSGIMAAD IITDSGAMHVAGVPI
Sbjct: 288 VFSSGSVQLHWSQWPPSQNNTSPKWFRTSKGLLGAGPSGIMAADAIITDSGAMHVAGVPI 347

Query: 325 VNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSE 384
           VNPSTVVVWEVTPGPGNGFQA P  + SNGVPPS+ PP W+GFAPLAAYLFSWQE+L+SE
Sbjct: 348 VNPSTVVVWEVTPGPGNGFQATPMASASNGVPPSVKPPNWSGFAPLAAYLFSWQEHLMSE 407

Query: 385 AKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGS 444
           A QG+K  D++F+D ++LHCSPVSNFSAYVSPEAAAQSAATTTWGSGV+AVAFDPTRGGS
Sbjct: 408 AMQGKKHMDKDFTDTVSLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVSAVAFDPTRGGS 467

Query: 445 VIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTV 504
           VIAVVIVEGQYMSPYDPDEGP ITGWRVQRWESS+QPVVLH IFGNPTS FGGQAPMQTV
Sbjct: 468 VIAVVIVEGQYMSPYDPDEGPLITGWRVQRWESSLQPVVLHPIFGNPTSGFGGQAPMQTV 527

Query: 505 WVSKVDTSI-PTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARI 563
           WVSKVDTSI PT++FK  Q A A P  D  K +DSG EK+K V+FDP DLPSD+R+LARI
Sbjct: 528 WVSKVDTSIPPTNDFKNLQAAPAVPISDGRKASDSGSEKTKRVTFDPSDLPSDVRTLARI 587

Query: 564 VYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTN 623
           VYSAHGGEIAIA LRGGVHIFSGPNF  VDNYQI+VGSAIAAPAFSSTSC SASVWHDT 
Sbjct: 588 VYSAHGGEIAIAFLRGGVHIFSGPNFTLVDNYQINVGSAIAAPAFSSTSCSSASVWHDTR 647

Query: 624 KDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDG 683
           KDR+ILKIIRVLPPA P SQVKANS+ WERAIAERFWWSLLV VDWWDAVGCTQSAAEDG
Sbjct: 648 KDRSILKIIRVLPPAGPISQVKANSAIWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDG 707

Query: 684 IVSLNSVIAVLDADFHSLPSIQHRQQYGP-----------------SLDRIKCRLLEGTN 726
           IVSLNSVIAVLDADFHSLPS QHRQ YGP                 SLDRIKCRLLEGTN
Sbjct: 708 IVSLNSVIAVLDADFHSLPSTQHRQLYGPNIRLGLDVEWSCGTLHKSLDRIKCRLLEGTN 767

Query: 727 AQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPAL 786
           AQEVRAMVLDMQARLLLDMLGKGIESALINPSALV +PWQASGETLSGIDPEAM VEP L
Sbjct: 768 AQEVRAMVLDMQARLLLDMLGKGIESALINPSALVLEPWQASGETLSGIDPEAMTVEPNL 827

Query: 787 VASI---------------------------------QAYVDAVLDLASHFITRLRRYAS 813
           V +I                                 QAYVDAVLDLASHFITRLRRYAS
Sbjct: 828 VPNIQFRLVSLLYPSTQTELVGYFPASSQLKHLPLLMQAYVDAVLDLASHFITRLRRYAS 887

Query: 814 FCRTLASHAVTAGTGSNRNMVASPTQSSATPA 845
           FCRTLASHAVTAG GSNRN V SPTQSSA+PA
Sbjct: 888 FCRTLASHAVTAGAGSNRNTVTSPTQSSASPA 919

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549357|ref|XP_003543060.1| PREDICTED: uncharacterized protein LOC100812938 [Glycine max]

 Score = 1325 bits (3430), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 656/785 (83%), Positives = 702/785 (89%), Gaps = 2/785 (0%)

Query: 66  DSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNA 125
           +S+TPATVFCIRLKQP+SNL +KMSVPE+CRNFSAV+WCGKLNAIACASETCARIPSS  
Sbjct: 2   ESLTPATVFCIRLKQPKSNLLYKMSVPEICRNFSAVSWCGKLNAIACASETCARIPSSTG 61

Query: 126 NTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWT 185
           N PFWIPIHIVIPERPTECAVFNVIAD PRDSVQFIEWSPT CPRALL+ANF+GRVTIWT
Sbjct: 62  NPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTCCPRALLVANFHGRVTIWT 121

Query: 186 QPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKF 245
           QPS G ANL  DASCW REHEWRQDIAVVTKWLSGVS YRWLSSK + P N++S FEEKF
Sbjct: 122 QPSQGQANLALDASCWLREHEWRQDIAVVTKWLSGVSLYRWLSSKPSGPANSRSTFEEKF 181

Query: 246 LSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIM 305
           LSQ  QTS RWPNFLCVCSV SSGSVQL+WSQWPP QN    KWF T+KG LG GPSGIM
Sbjct: 182 LSQQCQTSARWPNFLCVCSVLSSGSVQLHWSQWPP-QNATPPKWFCTSKGPLGCGPSGIM 240

Query: 306 AADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWA 365
           A D IITDSGAMHVAGVPIVNPST+VVWEV PGPGNGFQ  P+T+T+NGVPP LS P W 
Sbjct: 241 AGDAIITDSGAMHVAGVPIVNPSTIVVWEVMPGPGNGFQVIPRTSTNNGVPPPLSSPNWT 300

Query: 366 GFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAAT 425
           GFAPLAAYLFSWQ++LLSE KQG+  T+QN  D+I L+CSPVSNFSAYVSPE AAQ+AAT
Sbjct: 301 GFAPLAAYLFSWQDHLLSEEKQGKNQTNQNLGDSIPLNCSPVSNFSAYVSPETAAQTAAT 360

Query: 426 TTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLH 485
           TTWGSGVTAVAFDPT GGSVIAVVI EGQYMSPYDPDEGPSITGWRVQ WESS+Q VVLH
Sbjct: 361 TTWGSGVTAVAFDPTCGGSVIAVVIAEGQYMSPYDPDEGPSITGWRVQLWESSLQHVVLH 420

Query: 486 QIFGNPTSSFGGQAPMQTVWVSKVDTSIP-TSNFKIHQLAAAGPTCDVWKTTDSGLEKSK 544
            IFGNPTSS GGQ PMQTVW +KVD SIP T++FK HQ  A G   D+ K ++ G +KSK
Sbjct: 421 PIFGNPTSSMGGQPPMQTVWQTKVDLSIPPTNDFKNHQAPAVGMNTDIQKVSEFGFDKSK 480

Query: 545 IVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIA 604
            V+FDPFDLPSD+R+LARIVYS HGGEIAIA LRGGVHIFSGPNFAPVDNYQISVGSAIA
Sbjct: 481 RVNFDPFDLPSDVRALARIVYSPHGGEIAIAFLRGGVHIFSGPNFAPVDNYQISVGSAIA 540

Query: 605 APAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLL 664
           APAFSSTSCCSASVWHD +KD+TILKIIRVLPPA+P+SQVK NSS WERAIAERFWWSLL
Sbjct: 541 APAFSSTSCCSASVWHDPSKDQTILKIIRVLPPAIPTSQVKTNSSNWERAIAERFWWSLL 600

Query: 665 VNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEG 724
           V V+WWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPS QHRQQY PSLDRIKCRLLEG
Sbjct: 601 VGVNWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSAQHRQQYCPSLDRIKCRLLEG 660

Query: 725 TNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEP 784
            NAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQ S ETL+ IDPEA+AVEP
Sbjct: 661 ANAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQVSSETLTSIDPEAVAVEP 720

Query: 785 ALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATP 844
           ALV  +QAYVD+VLDLASHFITRLRRYASFCRTLASHAVTAGTG+NRN+VASP Q SATP
Sbjct: 721 ALVPCVQAYVDSVLDLASHFITRLRRYASFCRTLASHAVTAGTGNNRNVVASPAQCSATP 780

Query: 845 AASQG 849
           A SQG
Sbjct: 781 ATSQG 785

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	855
TAIR|locus:2135383	1278	SFR6 "AT4G04920" [Arabidopsis	0.907	0.607	0.839	0.0

TAIR|locus:2135383 SFR6 "AT4G04920" [Arabidopsis thaliana (taxid:3702)]

 Score = 3471 (1226.9 bits), Expect = 0., P = 0.
 Identities = 652/777 (83%), Positives = 703/777 (90%)

Query:    59 SDDPMDEDSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCA 118
             S   M+ D V+PATVFC++LKQP SNL HKMSVPELCRNFSAVAWCGKLNAIACASETCA
Sbjct:    73 SSSNMEIDPVSPATVFCVKLKQPNSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCA 132

Query:   119 RIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFY 178
             RIPSS ANTPFWIPIHI+IPERPTECAVFNV+AD PRDSVQFIEWSPTSCPRALLIANF+
Sbjct:   133 RIPSSKANTPFWIPIHILIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFH 192

Query:   179 GRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAK 238
             GR+TIWTQP+ G ANLV DA+ WQ EHEWRQDIAVVTKWL+G SPYRWLSSK +S  NAK
Sbjct:   193 GRITIWTQPTQGSANLVHDATSWQCEHEWRQDIAVVTKWLTGASPYRWLSSKPSSGTNAK 252

Query:   239 SIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLG 298
             S FEEKFLSQ+S++S RWPNFLCVCSVFSSGSVQ++WSQWP +Q   A KWF T KGLLG
Sbjct:   253 STFEEKFLSQSSESSARWPNFLCVCSVFSSGSVQIHWSQWPSNQGSTAPKWFSTKKGLLG 312

Query:   299 AGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPS 358
             AGPSGIMAAD IITDSGAMHVAGVPIVNPST+VVWEVTPGPGNG QA PK +T + VPPS
Sbjct:   313 AGPSGIMAADAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPS 372

Query:   359 LSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEA 418
             LS   W GFAPLAAYLFSWQEYL+SE KQG+K +DQ+ SDAI+L CSPVSNFSAYVSPEA
Sbjct:   373 LSSSSWTGFAPLAAYLFSWQEYLISEIKQGKKPSDQDSSDAISLSCSPVSNFSAYVSPEA 432

Query:   419 AAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESS 478
             AAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESS
Sbjct:   433 AAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESS 492

Query:   479 VQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIP-TSNFKIHQLAAAGPTCDVWKTTD 537
             VQPVVLHQIFGNPTS+FGGQ P QTVWVS+VD SIP T +FK HQ+AAAGP+ D  K  D
Sbjct:   493 VQPVVLHQIFGNPTSNFGGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPD 552

Query:   538 SGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQI 597
             SG EK+  V FDPFDLPSDIR+LARIVYSAHGGEIAIA LRGGVHIFSGP F+PV+NYQI
Sbjct:   553 SGDEKANKVVFDPFDLPSDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQI 612

Query:   598 SVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAE 657
             +VGSAIAAPAFS TSCCSASVWHD  KD  +LKIIRVLPPA+P +Q K + STWERAIAE
Sbjct:   613 NVGSAIAAPAFSPTSCCSASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIAE 672

Query:   658 RFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRI 717
             RFWWSLLV VDWWDAVGCTQSAAEDGIVSLNSVIAV+DADFHSLPS QHRQQYGP+LDRI
Sbjct:   673 RFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRI 732

Query:   718 KCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDP 777
             KCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESAL+NPSALV +PW+  GET++GI+P
Sbjct:   733 KCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETITGINP 792

Query:   778 EAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMV 834
             EAMAV+PALV+SIQAYVDAVLDLASHFITRLRRYASFCRTLASHA +AGTGSNRN V
Sbjct:   793 EAMAVDPALVSSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNNV 849


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      855       809   0.00099  121 3  11 22  0.40    34
                                                     37  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  636 (68 KB)
  Total size of DFA:  465 KB (2215 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  69.77u 0.11s 69.88t   Elapsed:  00:00:04
  Total cpu time:  69.78u 0.11s 69.89t   Elapsed:  00:00:04
  Start:  Tue May 21 18:28:14 2013   End:  Tue May 21 18:28:18 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009631 "cold acclimation" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0032922 "circadian regulation of gene expression" evidence=IMP

GO:0048586 "regulation of long-day photoperiodism, flowering" evidence=IMP

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0010104 "regulation of ethylene mediated signaling pathway" evidence=IMP

GO:1901672 "positive regulation of systemic acquired resistance" evidence=IMP

GO:2000022 "regulation of jasmonic acid mediated signaling pathway" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4JGZ1	MED16_ARATH	No assigned EC number	0.8009	0.9672	0.6471	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	855
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	94.01
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	93.16

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=94.01  E-value=0.12  Score=48.26  Aligned_cols=76  Identities=24%  Similarity=0.350  Sum_probs=47.5

Q ss_pred             ceEEEEecCCCcc----hheeeeeccccEEEeecCCCCCCcccccccccccchhcccceeeeeeeccCCCCeeec-ccCC
Q 003032          157 SVQFIEWSPTSCP----RALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWL-SSKS  231 (855)
Q Consensus       157 svq~ieWSp~~cp----RALLiAnf~GRvtIWtQPsqg~~nlv~da~~w~~ehEWrqd~avvTKWLsg~spyrwl-ssks  231 (855)
                      .|-.++|||.+|-    =.|.+.+-.|||+||..+..-             ..||. .+++|+|-|.    ++.. ...+
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~-------------~~~W~-~v~dvs~~l~----~~~~~~~~~  148 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNP-------------QGEWN-RVADVSEALY----SYFYNWEPS  148 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCc-------------cccEe-eeeehhHHHH----HhhhccCCC
Confidence            6889999998883    246788999999999987641             24565 4566666665    2221 1222


Q ss_pred             CCCCCccchhhHhhhccCc
Q 003032          232 TSPLNAKSIFEEKFLSQNS  250 (855)
Q Consensus       232 Ss~~~~kstFeEKflsqq~  250 (855)
                      .........|.+.|..++.
T Consensus       149 ~~~~~~~~~~~~~~~~~~i  167 (173)
T PF12657_consen  149 ESSPLDFEEFQRRFRKQRI  167 (173)
T ss_pred             cccccccchhhhhhhccce
Confidence            2233334456666776664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=93.16  E-value=0.62  Score=53.34  Aligned_cols=157  Identities=19%  Similarity=0.199  Sum_probs=98.8

Q ss_pred             eEEeeccCCCceeeeeccCCCCC--CCCCCCCceeEEEeeeecccCCCCccccccccCCCcccccccccccccccceeec
Q 003032          471 RVQRWESSVQPVVLHQIFGNPTS--SFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSF  548 (855)
Q Consensus       471 RVqrWESs~qpVvlHpifgnpts--s~gGqpPmqTvW~skvd~SIp~tdfkn~q~~~~g~~~d~~k~s~~~~dksk~v~F  548 (855)
                      -|.|||=..++..|||+|..-.|  +.++++++.+.|+..-|+.++..                            -+.+
T Consensus       214 iI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~----------------------------V~si  265 (753)
T PF11635_consen  214 IIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKR----------------------------VVSI  265 (753)
T ss_pred             EEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCe----------------------------EEEE
Confidence            38999988888999999988763  45578999999998877765432                            1222


Q ss_pred             CCCCCcccHHHHHhhhhcccCCeEEEEEecCceeEeeCCCCCcccce-----ee-------eccccccc------CccCc
Q 003032          549 DPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNY-----QI-------SVGSAIAA------PAFSS  610 (855)
Q Consensus       549 dpfdlP~d~r~lAriVySAhGGEiavAfl~GgVHIFSG~nftpVdny-----qI-------nVgs~Ia~------PAFSs  610 (855)
                      ++.               -.|+=++++|--|-||++.=.+|.++...     ..       .+|=+.+.      -|||+
T Consensus       266 ~~~---------------~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP  330 (753)
T PF11635_consen  266 TSP---------------ELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP  330 (753)
T ss_pred             Eec---------------ccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc
Confidence            222               22337899999999999999999766544     11       13434432      26999


Q ss_pred             cccccceeeecCCCCceEEEEEeecCCCccccccccchhhHHHHHHHHH--hHhhhhcccccccccccc
Q 003032          611 TSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERF--WWSLLVNVDWWDAVGCTQ  677 (855)
Q Consensus       611 TSCCsASVWHDt~kd~tiLkIirVLPPa~p~~q~ka~ss~weraiaeRF--WwSLlvgVdWWDaVgcTQ  677 (855)
                      |+|..+-.  |...+..  |....+....-..|.-..+++   ++|=+|  =.-...+-|||+++-+++
T Consensus       331 t~c~~v~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~a~---~~al~~~~a~~~~~~~DDl~~l~~~~  392 (753)
T PF11635_consen  331 TMCSLVQI--DEDGKTK--KLLYMMRDSGSSPQDLYITAA---ALALRFSLACCSQTSSDDLLILIKTE  392 (753)
T ss_pred             ccceEEEE--ecCCCce--eeEEeecCCCCCccccchhHH---HHHHHHHHHHHHhcCcchHHHhhhhh
Confidence            99977655  2222211  555555544433333332111   222233  122457899999998776

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	855
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 1e-06
 Identities = 50/363 (13%), Positives = 110/363 (30%), Gaps = 98/363 (26%)

Query: 504 VWVSKV----D----TSIPTSNFKIHQLAAAGPTCDVW-KTTDSGLEK-------SKIVS 547
           V  +K     +      + T   ++    +A  T  +        L          K + 
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 548 FDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPA 607
             P DLP ++ +      S     IA   +R G+  +   N+  V+  +++  + I    
Sbjct: 313 CRPQDLPREVLTTNPRRLSI----IA-ESIRDGLATWD--NWKHVNCDKLT--TII---- 359

Query: 608 FSSTSCCSASVWH-DTNKDRTILKIIRVLPPAVP-SSQVKANSSTWERAIAERFWWSLLV 665
                   +S+   +  + R +   + V PP+    + +               W+ ++ 
Sbjct: 360 -------ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-----------LSLIWFDVIK 401

Query: 666 NVDWWDAVGC-TQSAAE----DGIVSLNSVIAVLDADFHSLPSIQHRQ---QYG------ 711
           +            S  E    +  +S+ S+   L     +  ++ HR     Y       
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-HRSIVDHYNIPKTFD 460

Query: 712 ------PSLDR-----IKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSAL 760
                 P LD+     I   L    + + +      +   + LD   + +E  + + S  
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERM-----TLFRMVFLDF--RFLEQKIRHDST- 512

Query: 761 VPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLAS 820
               W ASG  L+             +  ++ Y   + D    +   +     F   +  
Sbjct: 513 ---AWNASGSILN------------TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557

Query: 821 HAV 823
           + +
Sbjct: 558 NLI 560

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 3e-05
 Identities = 76/506 (15%), Positives = 136/506 (26%), Gaps = 166/506 (32%)

Query: 22  KDSEEDLAAQPVETVIKPDKSDTLSSAAAAEEEASAKSD------DPM--DEDSVTPATV 73
              +E++  + VE V++ +    +S     + + S  +       D +  D        V
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 74  FCIRLKQPRSNLQHKMSVPELCRNFSAV-----AWCGK--LNAIACASETCARIPSSNAN 126
              R  QP   L+  +   EL R    V        GK  +    C S    ++      
Sbjct: 132 --SR-LQPYLKLRQALL--EL-RPAKNVLIDGVLGSGKTWVALDVCLSY---KVQCKMDF 182

Query: 127 TPFWIPI-HIVIPE-------------RPTECAVFNVIADCPR--DSVQ-----FIEWSP 165
             FW+ + +   PE              P   +  +  ++      S+Q      ++  P
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 166 TSCPRALLI----------ANFYGRVTIWTQPSHGPANLV--RDASCWQREHEWRQDIAV 213
                 LL+            F     I          L+  R                 
Sbjct: 243 Y--ENCLLVLLNVQNAKAWNAFNLSCKI----------LLTTRFKQVTDFLSAATTTHIS 290

Query: 214 VTKWLSGVSPY-------RWLSSK---------STSPLNAKSIFEEKFLSQNSQTSDRWP 257
           +      ++P        ++L  +         +T+P    SI  E  +     T D W 
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR-RLSIIAE-SIRDGLATWDNWK 348

Query: 258 NFLC------------------------VCSVF------SSGSVQLNWSQWPPS------ 281
           +  C                          SVF       +  + L W     S      
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 282 ----QNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTP 337
               +     K    +   +   PS  +   V + +  A+H          ++V      
Sbjct: 409 NKLHKYSLVEKQPKESTISI---PSIYLELKVKLENEYALH---------RSIV------ 450

Query: 338 GPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLT----- 392
              + +   PKT  S+     L PP          Y +S   + L   +   ++T     
Sbjct: 451 ---DHYN-IPKTFDSDD----LIPPYLDQ------YFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 393 --DQNFSDAITLHCSPVSNFSAYVSP 416
             D  F +    H S   N S  +  
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILN 522

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	855
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	80.47

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=80.47  E-value=2.9  Score=39.53  Aligned_cols=80  Identities=15%  Similarity=0.362  Sum_probs=56.1

Q ss_pred             cChhHhhhcc--chhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCC
Q 003032           89 MSVPELCRNF--SAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPT  166 (855)
Q Consensus        89 msvpElcRnF--savawc~klN~Iaca~eTCarip~S~~np~FWiPIhIviPerPtE~avfnV~adsp~dsvq~ieWSp~  166 (855)
                      +..|+|...|  +-|+|. +.|.||.+...+.+               |...+--.-...+.  .....+.|.++.|||.
T Consensus        97 l~ap~~~~d~y~~~l~wS-~~n~lAvgld~tV~---------------lWd~~tg~~~~~~~--~~~~~~~V~sv~fspd  158 (420)
T 4gga_A           97 LDAPEIRNDYYLNLVDWS-SGNVLAVALDNSVY---------------LWSASSGDILQLLQ--MEQPGEYISSVAWIKE  158 (420)
T ss_dssp             EECTTCCCCTTCBCEEEC-TTSEEEEEETTEEE---------------EEETTTCCEEEEEE--CCSTTCCEEEEEECTT
T ss_pred             EECCCCcccccceeEEEC-CCCEEEEEeCCEEE---------------EEECCCCCEEEEEE--ecCCCCcEEEEEECCC
Confidence            4568888777  568996 56999998766543               44433222222333  3456789999999996


Q ss_pred             CcchheeeeeccccEEEeecCC
Q 003032          167 SCPRALLIANFYGRVTIWTQPS  188 (855)
Q Consensus       167 ~cpRALLiAnf~GRvtIWtQPs  188 (855)
                      +  +-|+++..+|.|.||.-.+
T Consensus       159 g--~~lasgs~Dg~v~iWd~~~  178 (420)
T 4gga_A          159 G--NYLAVGTSSAEVQLWDVQQ  178 (420)
T ss_dssp             S--SEEEEEETTSCEEEEETTT
T ss_pred             C--CEEEEEECCCeEEEEEcCC
Confidence            5  5788999999999997543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	855
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	81.31

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.31  E-value=0.54  Score=37.56  Aligned_cols=35  Identities=29%  Similarity=0.538  Sum_probs=29.9

Q ss_pred             ecCCCCCceEEEEecCCCcchheeeeeccccEEEeec
Q 003032          150 IADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQ  186 (855)
Q Consensus       150 ~adsp~dsvq~ieWSp~~cpRALLiAnf~GRvtIWtQ  186 (855)
                      +-..|.|.|..|.|||.+  +-|+.+-.+|.|.||.-
T Consensus         6 ~~~~h~d~I~~l~fsp~~--~~L~s~s~Dg~v~iwd~   40 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSK--SLLLITSWDGSLTVYKF   40 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGG--TEEEEEETTSEEEEEEE
T ss_pred             cCCCCCCCEEEEEEeCCC--CEEEEEECCCeEEEEEc
Confidence            347899999999999964  67888999999999953