Citrus Sinensis ID: 003041

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850----
MAERGSAAVITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPNQNPPPVTKFQIPIPKTLTLEESRAFLTVLLNKLLLGSSIRTAFAVLISETLNSQTETLQFESVDVTEDERIVLEKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGKMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKVGISGTAKAVGANALALAAAIHNLGESSLYRAKMNLNSINSDGLRSLFEKDCSSGDNLRKTYKLVLDANFEEDYVKFLHEANVLLGMVWKIVTWEAVLAFVALEGGELLGEKVNGGDVVVDKKSEKKKKKAVLGKGTGVIVQLIKDRLQSKSLGILEKWSEDLFSFFDPRDPEFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ
ccccccccEEEEccccccccccHHHHHHcccccccccHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHcHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcccccccccEEEccccccccccccccccHHHHHHHHHccccccEEEEccccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHcccccccccHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccEEcccccccHHHHHccccccccccEEEEHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHccccEEEEEcccHHcccEEEEEEcccccccEEcHHHHHHHHHHHHcc
cccccccEEEEEccccccccHHHHHHHHcccccccEcHHHHHHcccccccccccccccccccccHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccHcHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccccccccccHcHHHHHHHHHHHHHccHHcccccccHHEEcccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHccccEEccccEEHHHHHHccccccccEEEEcccccccEEEEcccccHHHHHHHHHccccccEEEEEccEEEccccccccEEEEEEccEEEEcccccccHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccEcHHHHcccccccccEEEEcccccccHHHHccccccccHEHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccHHHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHccccEEEEEcHHHHHcccEEEEEcccccEEEEcHHHHHHHHHHHHcc
MAERGSAAVITvggkgsslnsSSVYAISNGLAqvrvdssaldrlsstlpnqnpppvtkfqipipktltLEESRAFLTVLLNKLLLGSSIRTAFAVLISETLNsqtetlqfesvdvteDERIVLEKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCeasgadvaafnsidsgdgftakeeigvAGDLKVLLNGSKlvgkmksedileipkiNGKLREVVKSVHSSTRVELNSSVKVGISGTAKAVGANALALAAAIHNLGESSLYRAKMNlnsinsdgLRSLFEKdcssgdnlrKTYKLVLDANFEEDYVKFLHEANVLLGMVWKIVTWEAVLAFVALEGgellgekvnggdvvvdkksekkKKKAVLGKGTGVIVQLIKDRLQSKSLGILEKWSedlfsffdprdpefdGLLTKIREIVEsnesrrlpklpkgtrDFAKEQMAVREKAFSIITEVFKrhgamaldtpVFEMRETLmgkygedsKLIYDLADQGgelcslrydltVPFARYVAMNGLTSFKRHQIAKVyrrdnpskgryrefyQCDFDiagqyermgpdFEVVKILTELLNeldigdyeIKLNHRLLLDGMLeicgvpsekFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLargldyytgvgsiaaggrydnligmfgtkqvpavgVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ
maergsaavitvggkgsslnsSSVYAISNGLAQVRVDSSALDRLSstlpnqnpppvtkFQIPIPKTLTLEESRAFLTVLLNKLLLGSSIRTAFAVLISETLnsqtetlqfesvdvtedERIVLEKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSklvgkmksedileipkingklreVVKSVHsstrvelnssvkvgISGTAKAVGANALALAAAIHNLGESSLYRAKMNLNSINSDGLRSLFEKDCSSGDNLRKTYKLVLDANFEEDYVKFLHEANVLLGMVWKIVTWEAVLAFVALEGgellgekvnggdvvvdkksekkkkkavlgkgtgvivQLIKDRLQSKSLGILEKWSEDLFSFFDPRDPEFDGLLTKIREivesnesrrlpklpkgtrdfAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNgltsfkrhqiakvyrrdnpskgryREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEmveekglsvetadrigtfvkergsplVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDrareskipwmvivgerelnegivklknidttqeevisrsnfveeIQRRLNQ
MAERGSAAVITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPNQNPPPVTKFQIPIPKTLTLEESRAFLTVLLNKLLLGSSIRTAFAVLISETLNSQTETLQFESVDVTEDERIVLEKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGKMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKVGISGTakavganalalaaaIHNLGESSLYRAKMNLNSINSDGLRSLFEKDCSSGDNLRKTYKLVLDANFEEDYVKFLHEANVLLGMVWKIVTWEAVLAFVALEGGELLGEkvnggdvvvdkksekkkkkavlgkgtgvIVQLIKDRLQSKSLGILEKWSEDLFSFFDPRDPEFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ
************************YAI******************************KFQIPIPKTLTLEESRAFLTVLLNKLLLGSSIRTAFAVLISETLNSQTETLQFESVDVTEDERIVLEKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGKMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKVGISGTAKAVGANALALAAAIHNLGESSLYRAKMNLNSINSDGLRSLFEKDCSSGDNLRKTYKLVLDANFEEDYVKFLHEANVLLGMVWKIVTWEAVLAFVALEGGELLGEKVNGGDVV***************KGTGVIVQLIKDRLQSKSLGILEKWSEDLFSFFDPRDPEFDGLLTKIREIV***********************AVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLD******************VETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQE*V****************
************GGKGSSLNSSSVYAISNGLAQVRVDSSAL*****************FQIPIPKTLTLEESRAFLTVLLNKLLLGSSIRTAFAVLISETLNSQ*****************VLEKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLN***************IPKINGKLREVVKSVHSSTRVELNS*******GTAKAVGANALALAAAIHNLGESSLYRAKMNLNSINSDGLRSLFEKDCSSGDNLRKTYKLVLDANFEEDYVKFLHEANVLLGMVWKIVTWEAVLAF*************************************GVIVQLIKDRLQSKSLGILEKWSE*************************************GTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKE***IIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN*
***************GSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPNQNPPPVTKFQIPIPKTLTLEESRAFLTVLLNKLLLGSSIRTAFAVLISETLNSQTETLQFESVDVTEDERIVLEKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGKMKSEDILEIPKINGKLREVV*********ELNSSVKVGISGTAKAVGANALALAAAIHNLGESSLYRAKMNLNSINSDGLRSLFEKDCSSGDNLRKTYKLVLDANFEEDYVKFLHEANVLLGMVWKIVTWEAVLAFVALEGGELLGEKVNGGDVVV*************GKGTGVIVQLIKDRLQSKSLGILEKWSEDLFSFFDPRDPEFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ
**************KGSSLNSSSVYA*SNGLAQVRVDSS*LDRL*************KFQIPIPKTLTLEESRAFLTVLLNKLLLGSSIRTAFAVLISETLNSQTETLQFESVDVTEDERIVLEKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGKMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKVGISGTAKAVGANALALAAAIHNLGESSLYRAKMNLNSINSDGLRSLFEKDCSSGDNLRKTYKLVLDANFEEDYVKFLHEANVLLGMVWKIVTWEAVLAFVALEGGELLGE*******************AVLGKGTGVIVQLIKDRLQSKSLGILEKWSEDLFSFFDPRDPEFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN*
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MAERGSAAVITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPNQNPPPVTKFQIPIPKTLTLEESRAFLTVLLNKLLLGSSIRTAFAVLISETLNSQTETLQFESVDVTEDERIVLEKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGKMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKVGISGTAKAVGANALALAAAIHNLGESSLYRAKMNLNSINSDGLRSLFEKDCSSGDNLRKTYKLVLDANFEEDYVKFLHEANVLLGMVWKIVTWEAVLAFVALEGGELLGEKVNGGDVVVDKKSEKKKKKAVLGKGTGVIVQLIKDRLQSKSLGILEKWSEDLFSFFDPRDPEFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query854 2.2.26 [Sep-21-2011]
P93422788 Histidine--tRNA ligase OS yes no 0.830 0.899 0.541 0.0
Q2KI84509 Histidine--tRNA ligase, c yes no 0.487 0.817 0.549 1e-134
Q61035509 Histidine--tRNA ligase, c yes no 0.487 0.817 0.551 1e-134
P70076519 Histidine--tRNA ligase, c N/A no 0.484 0.797 0.535 1e-133
P12081509 Histidine--tRNA ligase, c yes no 0.507 0.850 0.537 1e-133
Q5R4R2509 Histidine--tRNA ligase, c yes no 0.507 0.850 0.533 1e-133
Q86AS6481 Histidine--tRNA ligase, c yes no 0.492 0.875 0.530 1e-128
P07178508 Histidine--tRNA ligase, c N/A no 0.511 0.860 0.503 1e-122
P49590506 Probable histidine--tRNA no no 0.488 0.824 0.493 1e-122
Q5R5E5506 Probable histidine--tRNA no no 0.488 0.824 0.493 1e-122
>sp|P93422|SYH_ORYSJ Histidine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os05g0150900 PE=2 SV=2 Back     alignment and function desciption
 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/755 (54%), Positives = 521/755 (69%), Gaps = 46/755 (6%)

Query: 139 LDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKL 198
           +D  +S L  + DAVAALSCEA+  DVAAF+   SGDG +AK+E  VA D+K+LL GSKL
Sbjct: 36  IDCCASPLVRVADAVAALSCEAARGDVAAFDVPTSGDGLSAKDEADVAADVKMLLFGSKL 95

Query: 199 VGKMKSE---DILEIPKINGKLREVVKSVHSSTRVELNSSVKVGI-------SGTAKAVG 248
           VG           ++P +NG  RE V+++H+  R+ELN+ VK+G         G  +A+ 
Sbjct: 96  VGAAGGADAASFTKVPTVNGIFREAVRALHARVRIELNAPVKLGKRDAVQTGEGKEEALV 155

Query: 249 ANALALAAAIHNLGESSLYRAKMNLNSINSDGLRSLFEKDCSSGDNLRKTYKLVLDANFE 308
           A A  LA  +  + + S+ RA++ +  I+   LR    K  + G  +     ++     +
Sbjct: 156 ALATQLARPVQAMLKLSVARARLCVARIDDAELR----KKLTDGVEIDDLKGMLGKVTID 211

Query: 309 EDYVKFLHEANVLLGMVWKIVTWEAVLAFVALEGGELL-----GEKVNGGDVVVDKKSEK 363
            D V  L      L     I+ WEA +A   +E    +      E+   G    +  +  
Sbjct: 212 SDAVSVLRGVYNSLLKFRDILAWEAAVAMAVIEMDSSIEKPQACEENEAGSSTENPHASG 271

Query: 364 KKKKAVLGKG--------TGVIVQLIKD------RLQSKSLGILEKWSEDLFSFFDPRDP 409
           +K K              T  ++ L++D       + S +  +L +W  +L   FDP+ P
Sbjct: 272 EKPKGDKKSKKKKTLGKGTSAVLMLLRDLVTNGKEVLSVNSALLAEWGTELSLLFDPKCP 331

Query: 410 EFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDT 469
               L+ K++EIVE+NE RRLPK+PKGTRDF KEQMA+RE AFSIIT VFK HGA++LDT
Sbjct: 332 RLVSLVDKVKEIVETNEVRRLPKIPKGTRDFGKEQMAIREHAFSIITGVFKMHGAVSLDT 391

Query: 470 PVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQIAK 529
           PVFE+RETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMN ++S KR+QIAK
Sbjct: 392 PVFELRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNNISSLKRYQIAK 451

Query: 530 VYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLL 589
           VYRRDNPSKGRYREFYQCDFDIAG YE M PDFEV+K+LTELL++LDIG YEIKLNHR L
Sbjct: 452 VYRRDNPSKGRYREFYQCDFDIAGVYETMEPDFEVIKVLTELLDQLDIGTYEIKLNHRKL 511

Query: 590 LDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGS 649
           LDGMLEICGVP EKFRT+CSSIDKLDKQ+FEQ+KKE+V+EKG+S ETAD+IG  VK RG 
Sbjct: 512 LDGMLEICGVPPEKFRTVCSSIDKLDKQTFEQVKKELVDEKGISNETADKIGDLVKTRGP 571

Query: 650 PLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG- 708
           PL +L +LR+EGS F+ N+ +  AL++LEILF+AL+K+  I K+VFDLSLARGLDYYTG 
Sbjct: 572 PLEVLLELRKEGSKFMGNAGSVTALNELEILFKALDKANAIGKIVFDLSLARGLDYYTGV 631

Query: 709 -----------VGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQII 757
                      VGSIAAGGRYDNL+GMF  KQVPAVGVSLGIERVF IMEQ + E+NQ I
Sbjct: 632 IYEAVFKGTTQVGSIAAGGRYDNLVGMFSGKQVPAVGVSLGIERVFAIMEQQEMEKNQ-I 690

Query: 758 RATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVG 817
           RATET+VLV ++G  L LAAELVSELWNA +KAE+ +  ++   +  A +S IPWMV+VG
Sbjct: 691 RATETEVLVSIIGKDLILAAELVSELWNAGIKAEFKLTTRIQNHLKYATQSGIPWMVLVG 750

Query: 818 ERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 852
           E E++ G VKLKN+  +QEE + R+ F + ++++L
Sbjct: 751 ESEISSGKVKLKNLAASQEEEVDRTEFAQVLKQKL 785

Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 1
>sp|Q2KI84|SYHC_BOVIN Histidine--tRNA ligase, cytoplasmic OS=Bos taurus GN=HARS PE=2 SV=1 Back     alignment and function description
>sp|Q61035|SYHC_MOUSE Histidine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Hars PE=2 SV=2 Back     alignment and function description
>sp|P70076|SYHC_TAKRU Histidine--tRNA ligase, cytoplasmic OS=Takifugu rubripes GN=hars PE=3 SV=1 Back     alignment and function description
>sp|P12081|SYHC_HUMAN Histidine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=HARS PE=1 SV=2 Back     alignment and function description
>sp|Q5R4R2|SYHC_PONAB Histidine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=HARS PE=2 SV=1 Back     alignment and function description
>sp|Q86AS6|SYHC_DICDI Histidine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=hisS PE=3 SV=1 Back     alignment and function description
>sp|P07178|SYHC_MESAU Histidine--tRNA ligase, cytoplasmic OS=Mesocricetus auratus GN=HARS PE=2 SV=1 Back     alignment and function description
>sp|P49590|SYHM_HUMAN Probable histidine--tRNA ligase, mitochondrial OS=Homo sapiens GN=HARS2 PE=1 SV=1 Back     alignment and function description
>sp|Q5R5E5|SYHM_PONAB Probable histidine--tRNA ligase, mitochondrial OS=Pongo abelii GN=HARS2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query854
359495248890 PREDICTED: histidyl-tRNA synthetase-like 0.988 0.948 0.692 0.0
449441784879 PREDICTED: histidine--tRNA ligase-like [ 0.991 0.963 0.645 0.0
255569072886 histidyl-tRNA synthetase, putative [Rici 0.974 0.939 0.656 0.0
449530881879 PREDICTED: histidine--tRNA ligase-like [ 0.991 0.963 0.644 0.0
240255269883 histidyl-tRNA synthetase [Arabidopsis th 0.985 0.953 0.616 0.0
356513098864 PREDICTED: histidyl-tRNA synthetase-like 0.970 0.959 0.604 0.0
356527823792 PREDICTED: histidyl-tRNA synthetase-like 0.896 0.967 0.566 0.0
125550869885 hypothetical protein OsI_18483 [Oryza sa 0.974 0.940 0.510 0.0
222630224848 hypothetical protein OsJ_17145 [Oryza sa 0.927 0.933 0.505 0.0
413942483892 hypothetical protein ZEAMMB73_752171 [Ze 0.976 0.934 0.510 0.0
>gi|359495248|ref|XP_002271456.2| PREDICTED: histidyl-tRNA synthetase-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1169 bits (3024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/882 (69%), Positives = 708/882 (80%), Gaps = 38/882 (4%)

Query: 7   AAVITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPNQNPPPVTKFQIPIPKT 66
           ++VIT+GGKGSSL+++SV+A++NGLAQVR+DSS LD+L+S+  N+  PPV K  IPIPK 
Sbjct: 9   SSVITLGGKGSSLSAASVFAVANGLAQVRIDSSILDKLNSSSSNRKSPPV-KCHIPIPKI 67

Query: 67  LTLEESRAFLTVLLNKLLLGSSIRTAFAVLISETLNSQTETLQFESVDVTEDERIVLEKL 126
           LTLEESRAFL  LLNKLLL  S      VLISE LN+ ++ L    V+V+ +E  VLEK 
Sbjct: 68  LTLEESRAFLLALLNKLLLSGSASPVLPVLISEILNTGSKALDLGEVEVSAEEVGVLEKT 127

Query: 127 SLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVA 186
              + L GIC +LDH+SSALS I D VAA+SCEAS ADV A N +DSGDGF+ K+E+GVA
Sbjct: 128 C--ASLHGICGILDHESSALSTIADVVAAISCEASRADVGALNLMDSGDGFSVKDEVGVA 185

Query: 187 GDLKVLLNGSKLVGKMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKVGIS-GTAK 245
            DLKVLLNGSKLVGK++ + + EIPKI+G LREVV+ VH  TRVELNS  KV  + G  K
Sbjct: 186 SDLKVLLNGSKLVGKVEVDAVSEIPKIHGSLREVVRMVHLRTRVELNSGGKVDKAVGAGK 245

Query: 246 AVGANALALAAAIHNLGESSLYRAKMNLNSINSDGLRS----LFEKDCSSGDNLRKTYKL 301
           AV      LAA++  LGESSL RA MNLNSI SD LRS    LFE  C S D L+  Y+L
Sbjct: 246 AVATVVSPLAASLRYLGESSLSRANMNLNSIGSDNLRSSLVGLFEGKCPSIDGLKNAYRL 305

Query: 302 VLDANFEEDYVKFLHEANVLLGMVWKIVTWEAVLAFVALEGGELLGE---KVNGGDVVVD 358
           + +A FEEDYVKFLHE N LLGMVW+IV WEA+ AFV+LEG E +G+   +VNGGD   +
Sbjct: 306 ISEAVFEEDYVKFLHEVNGLLGMVWEIVIWEAITAFVSLEGSESIGKIGVEVNGGDQKGN 365

Query: 359 KKSEKKKKKAVLGKGTGVIVQLIKDRLQS------KSLGILEKWSEDLFSFFDPRDPEFD 412
              + +KKK VLGKGT VIVQL+K+RLQS       +  +L KW E + SF D +DPEFD
Sbjct: 366 VGKKSEKKKKVLGKGTSVIVQLVKERLQSGGGDAVDASSLLGKWVEGVHSFLDLKDPEFD 425

Query: 413 GLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVF 472
            LL K++EI+ESNESRRLPKLPKGTRDFAKEQMAVREKAFSII +VFKRHGAMALDTPVF
Sbjct: 426 SLLMKVKEILESNESRRLPKLPKGTRDFAKEQMAVREKAFSIIGDVFKRHGAMALDTPVF 485

Query: 473 EMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQIAKVYR 532
           E+RETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKR+QIAKVYR
Sbjct: 486 ELRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRYQIAKVYR 545

Query: 533 RDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDY---------EIK 583
           RDNPSKGRYREFYQCDFDIAGQYE MGPDFEV+KILTELL+EL+IGDY         ++K
Sbjct: 546 RDNPSKGRYREFYQCDFDIAGQYESMGPDFEVIKILTELLDELNIGDYDFEVPPHILQVK 605

Query: 584 LNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTF 643
           LNHR LLDGML+ICGVP EKFRTICSSIDKLDKQ+FEQIK+EMVEEKGL++ETA++IGTF
Sbjct: 606 LNHRKLLDGMLDICGVPPEKFRTICSSIDKLDKQTFEQIKREMVEEKGLTIETAEKIGTF 665

Query: 644 VKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGL 703
           VKERG PL LLSKL+QEGS FL N+++  AL DLEILF ALEKSKCI+KVVFDLSLARGL
Sbjct: 666 VKERGPPLELLSKLKQEGSEFLGNNASVAALTDLEILFTALEKSKCINKVVFDLSLARGL 725

Query: 704 DYYTG------------VGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQK 751
           DYYTG            VGSIAAGGRYDNLIGMFGTKQVPAVG SLGIERVF IMEQ+QK
Sbjct: 726 DYYTGVIFEAVFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGTSLGIERVFNIMEQLQK 785

Query: 752 ERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIP 811
           ++NQ IRATETQVLV + G+ L  AAELVSELWNAK+KAEYMV+K+  K  DRA ES+IP
Sbjct: 786 DQNQAIRATETQVLVSIFGNDLSQAAELVSELWNAKLKAEYMVNKRPTKHFDRAEESRIP 845

Query: 812 WMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 853
           WM++VGERE NEGIV+L++  T +E ++ RS  VEE+QRRL 
Sbjct: 846 WMILVGEREQNEGIVRLRDTTTREEILVPRSRIVEELQRRLT 887

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449441784|ref|XP_004138662.1| PREDICTED: histidine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255569072|ref|XP_002525505.1| histidyl-tRNA synthetase, putative [Ricinus communis] gi|223535184|gb|EEF36863.1| histidyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449530881|ref|XP_004172420.1| PREDICTED: histidine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|240255269|ref|NP_186925.4| histidyl-tRNA synthetase [Arabidopsis thaliana] gi|332640336|gb|AEE73857.1| histidyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356513098|ref|XP_003525251.1| PREDICTED: histidyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|356527823|ref|XP_003532506.1| PREDICTED: histidyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|125550869|gb|EAY96578.1| hypothetical protein OsI_18483 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|222630224|gb|EEE62356.1| hypothetical protein OsJ_17145 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|413942483|gb|AFW75132.1| hypothetical protein ZEAMMB73_752171 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query854
TAIR|locus:2075472883 AT3G02760 [Arabidopsis thalian 0.894 0.865 0.607 3.1e-241
RGD|1310695508 Hars "histidyl-tRNA synthetase 0.343 0.576 0.605 4.4e-126
UNIPROTKB|F1RGD9509 HARS "Uncharacterized protein" 0.343 0.575 0.608 7.1e-126
UNIPROTKB|Q2KI84509 HARS "Histidine--tRNA ligase, 0.323 0.542 0.642 9.1e-126
UNIPROTKB|P12081509 HARS "Histidine--tRNA ligase, 0.343 0.575 0.612 9.1e-126
MGI|MGI:108087509 Hars "histidyl-tRNA synthetase 0.343 0.575 0.605 9.1e-126
UNIPROTKB|E2QZ69509 HARS "Uncharacterized protein" 0.343 0.575 0.605 1.2e-125
ZFIN|ZDB-GENE-040912-152520 hars "histidyl-tRNA synthetase 0.323 0.530 0.639 9.2e-124
UNIPROTKB|F1ND13504 HARS "Uncharacterized protein" 0.323 0.547 0.621 2.8e-122
UNIPROTKB|B3KWE1440 HARS "Histidyl-tRNA synthetase 0.307 0.597 0.640 2.8e-120
TAIR|locus:2075472 AT3G02760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2325 (823.5 bits), Expect = 3.1e-241, P = 3.1e-241
 Identities = 485/798 (60%), Positives = 584/798 (73%)

Query:    87 SSIRTAFAVLISETLNSQTETLQFESVDVTEDERIVLEKLSLPSVLSGICAVLDHKSSAL 146
             S+ R+   + I E LN + E+L+   +DVTE E IVLEK S  S++ GIC+++DHKS+ L
Sbjct:    88 STARSVLPLKIVEILNLKAESLELGEIDVTEGENIVLEK-SCASLI-GICSIIDHKSTTL 145

Query:   147 SAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGKMKSED 206
             S I+D+VAALSCE + AD+A+F+ +DSGDG   K+ IGVAGDLKVLLNG K  GK++ E+
Sbjct:   146 SQIVDSVAALSCEVTKADIASFSLLDSGDGNGDKDVIGVAGDLKVLLNGYKGTGKLEIEE 205

Query:   207 ILEIPKINGKLREVVKSVHSSTRVELNSSVKVGISGTXXXXXXXXXXXX-----XXIHNL 261
             I +IP I+GK R VVKSVH+  R ELNS VK G +G+                   I NL
Sbjct:   206 ISKIPWIHGKFRYVVKSVHADARRELNSGVKGGKTGSGNTGIGEALGTTLLPLLTAIKNL 265

Query:   262 GESSLYRAKMNLNSINSDGLRS-LFEKDCSSGDNLRKTYKLVLDANFEEDYVKFLHEANV 320
             G  S  RAK+    I  + L+  L EK C   +NL+ +YKL   A+ EEDY +F H+ N 
Sbjct:   266 GVCSFLRAKLCFEKIVDENLKKCLSEKICVENENLKNSYKLAYTAHLEEDYCRFAHKLNE 325

Query:   321 LLGMVWKIVTWEAVLAFVALEGGELLGEXXXXXXXXXXXXXXXXXXXXXXXXX---XXXI 377
              LG+VW+IV  EAV AF AL GGEL  +                               +
Sbjct:   326 CLGIVWRIVGLEAVAAFFALAGGELFVQKSGDADKEESKTDKKKKKNEKKAVVGKGTSLV 385

Query:   378 VQLIKDRLQSKS-------LGILEKWSEDLFSFFDPRDPEFDGLLTKIREIVESNESRRL 430
             +Q IKDRL S         +  L +  E + + F+P    FD LL K++EIVESNE+RRL
Sbjct:   386 IQFIKDRLVSNDAASDGDQMHSLMQCGEQILNLFNPEGRSFDSLLDKVKEIVESNENRRL 445

Query:   431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIY 490
             PKLPKGTRDFAKEQMAVREKAFSII  VFKRHGA ALDTPVFE+RETLMGKYGEDSKL+Y
Sbjct:   446 PKLPKGTRDFAKEQMAVREKAFSIIQNVFKRHGATALDTPVFELRETLMGKYGEDSKLVY 505

Query:   491 DLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFD 550
             D+ADQGGELCSLRYDLTVPFARYVAMNG+TSFKR+QIAKVYRRDNPSKGRYREFYQCDFD
Sbjct:   506 DIADQGGELCSLRYDLTVPFARYVAMNGITSFKRYQIAKVYRRDNPSKGRYREFYQCDFD 565

Query:   551 IAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSS 610
             IAG +E MGPDFE+VKILTELL+EL+IGDYE+KLNHR LLDGMLEICGVP EKFRTICSS
Sbjct:   566 IAGLFEPMGPDFEIVKILTELLDELEIGDYEVKLNHRKLLDGMLEICGVPPEKFRTICSS 625

Query:   611 IDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSA 670
             IDKLDKQSFEQ+KKEMVEEKGLS E ADRIG FVKE+G+PL LLSKLRQEGS FL+N S+
Sbjct:   626 IDKLDKQSFEQVKKEMVEEKGLSSEIADRIGNFVKEKGAPLELLSKLRQEGSEFLDNQSS 685

Query:   671 KLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGV-----------GSIAAGGRYD 719
             + ALD+L I+F+AL++SKC +++VFDLSLARGLDYYTGV           GSI AGGRYD
Sbjct:   686 REALDELSIMFEALKRSKCSERIVFDLSLARGLDYYTGVIFEAVCIGAEVGSIGAGGRYD 745

Query:   720 NLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAE 778
             NLIGMFGTKQVPAVG+SLGIERVF IME++ +++ Q+IR TETQVLV ++ D KL  AAE
Sbjct:   746 NLIGMFGTKQVPAVGMSLGIERVFNIMEELNEKQKQVIRPTETQVLVSIMVDNKLAEAAE 805

Query:   779 LVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE- 837
             LVS+LW AK+ AEY+V K+  K  +RA+ES IPWMV+VGE+EL+   V LK ++   EE 
Sbjct:   806 LVSQLWGAKINAEYLVSKRKEKHFNRAKESGIPWMVMVGEKELSGSFVTLKKLEKGSEEK 865

Query:   838 ---VISRSNFVEEIQRRL 852
                  +R  FVEE+++ L
Sbjct:   866 EDQTCTRDRFVEELKKLL 883
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA
GO:0004821 "histidine-tRNA ligase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA
GO:0006427 "histidyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=IDA
GO:0048481 "ovule development" evidence=RCA
RGD|1310695 Hars "histidyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RGD9 HARS "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KI84 HARS "Histidine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P12081 HARS "Histidine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:108087 Hars "histidyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZ69 HARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040912-152 hars "histidyl-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1ND13 HARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|B3KWE1 HARS "Histidyl-tRNA synthetase, isoform CRA_a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P93422SYH_ORYSJ6, ., 1, ., 1, ., 2, 10.54170.83020.8997yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.1.10.921
3rd Layer4.3.1LOW CONFIDENCE prediction!
3rd Layer4.3.1.3LOW CONFIDENCE prediction!
4th Layer6.1.1.210.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT3G02760
ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding; ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding; FUNCTIONS IN- histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN- histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN- chloroplast, cytoplasm; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Histidyl-tRNA synthetase, class IIa, subgroup (InterPro-IPR015807), Aminoacyl-tRNA sy [...] (883 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
ATTRX3
ATTRX3 (THIOREDOXIN 3); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor [...] (118 aa)
    •   0.851
AT5G60960
pentatricopeptide (PPR) repeat-containing protein; pentatricopeptide (PPR) repeat-containing pr [...] (521 aa)
   •    0.778
AT3G58660
60S ribosomal protein-related; 60S ribosomal protein-related; FUNCTIONS IN- structural constitu [...] (446 aa)
   •    0.752
AT4G10320
isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putative; isoleucyl-tRNA synthet [...] (1190 aa)
   •  • 0.726
AT4G25730
FtsJ-like methyltransferase family protein; FtsJ-like methyltransferase family protein; FUNCTIO [...] (821 aa)
   •    0.709
SDN3
SDN3 (SMALL RNA DEGRADING NUCLEASE 3); exonuclease/ nucleic acid binding; SMALL RNA DEGRADING N [...] (782 aa)
   •    0.708
AT3G20810
transcription factor jumonji (jmjC) domain-containing protein; transcription factor jumonji (jm [...] (429 aa)
      • 0.708
AT5G26830
threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS); Encodes a dual-targeted threonyl-tRN [...] (709 aa)
   •  • 0.707
AT1G09620
ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding; ATP binding / ami [...] (1091 aa)
   •  • 0.695
AT1G06720
unknown protein; INVOLVED IN- ribosome biogenesis; LOCATED IN- nucleus; EXPRESSED IN- 21 plant [...] (1147 aa)
   •    0.691

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query854
PLN02972763 PLN02972, PLN02972, Histidyl-tRNA synthetase 0.0
COG0124429 COG0124, HisS, Histidyl-tRNA synthetase [Translati 1e-113
PRK00037412 PRK00037, hisS, histidyl-tRNA synthetase; Reviewed 2e-97
TIGR00442397 TIGR00442, hisS, histidyl-tRNA synthetase 7e-94
cd00773261 cd00773, HisRS-like_core, Class II Histidinyl-tRNA 1e-86
PRK12420423 PRK12420, PRK12420, histidyl-tRNA synthetase; Prov 1e-73
TIGR00443313 TIGR00443, hisZ_biosyn_reg, ATP phosphoribosyltran 4e-46
PLN02530487 PLN02530, PLN02530, histidine-tRNA ligase 7e-42
PRK12292391 PRK12292, hisZ, ATP phosphoribosyltransferase regu 9e-42
pfam13393308 pfam13393, tRNA-synt_His, Histidyl-tRNA synthetase 4e-40
COG3705390 COG3705, HisZ, ATP phosphoribosyltransferase invol 6e-35
pfam00587171 pfam00587, tRNA-synt_2b, tRNA synthetase class II 5e-30
CHL00201430 CHL00201, syh, histidine-tRNA synthetase; Provisio 8e-23
cd0085991 cd00859, HisRS_anticodon, HisRS Histidyl-anticodon 1e-18
pfam0312993 pfam03129, HGTP_anticodon, Anticodon binding domai 4e-14
PRK12295373 PRK12295, hisZ, ATP phosphoribosyltransferase regu 4e-10
PRK12295373 PRK12295, hisZ, ATP phosphoribosyltransferase regu 7e-10
PRK12421392 PRK12421, PRK12421, ATP phosphoribosyltransferase 1e-08
PLN02972763 PLN02972, PLN02972, Histidyl-tRNA synthetase 1e-07
cd00332444 cd00332, PAL-HAL, Phenylalanine ammonia-lyase (PAL 2e-05
PRK12305575 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed 2e-05
cd0073894 cd00738, HGTP_anticodon, HGTP anticodon binding do 4e-05
cd0086091 cd00860, ThrRS_anticodon, ThrRS Threonyl-anticodon 1e-04
COG0441589 COG0441, ThrS, Threonyl-tRNA synthetase [Translati 4e-04
cd00768211 cd00768, class_II_aaRS-like_core, Class II tRNA am 5e-04
TIGR00418563 TIGR00418, thrS, threonyl-tRNA synthetase 0.001
PRK09194565 PRK09194, PRK09194, prolyl-tRNA synthetase; Provis 0.004
>gnl|CDD|215525 PLN02972, PLN02972, Histidyl-tRNA synthetase Back     alignment and domain information 
 Score = 1055 bits (2729), Expect = 0.0
 Identities = 493/755 (65%), Positives = 583/755 (77%), Gaps = 36/755 (4%)

Query: 123 LEKLSLPSVLSGICAV-LDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKE 181
           L   S+ ++ +G+    +D  ++ L+ ++DAVAALSCEA+ ADVAAF+ +DSGDG + K+
Sbjct: 17  LTSASVYALATGVAQPRIDSSATCLARVVDAVAALSCEAAKADVAAFDVLDSGDGLSDKD 76

Query: 182 EIGVAGDLKVLLNGSKLVGKMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKVGIS 241
           E  VAGD+KVLLNGSKLVGK ++E   +IPKING  RE VK+VH+  R+ELNS VK+G  
Sbjct: 77  EADVAGDMKVLLNGSKLVGKAQAEVFSKIPKINGIFREAVKAVHAVVRIELNSPVKLGKR 136

Query: 242 GTAKAVGANALALAAAIHNLGESSLYRAKMNLNSINSDGLRSLFEKDCSSGDNLRKTYKL 301
              +        LA A+  LG+ S+ RAK+ L  I  + LR    K  +SG  L   Y L
Sbjct: 137 DAIQTG----EGLARAVQALGKLSVARAKLCLEVIGDEELR----KKLTSGVVLDNLYGL 188

Query: 302 VLDANFEEDYVKFLHEANVLLGMVWKIVTWEAVLAFVALEGGELL------GEKVNGGDV 355
           +L  + EED V FLH  N LLG+VW IV WEA  AF  LEGGEL+       E   G   
Sbjct: 189 LLKVSIEEDAVSFLHGVNNLLGIVWDIVAWEAAAAFAVLEGGELIEKPQAEAENEAGKS- 247

Query: 356 VVDKKSEKKKKKAVLGKGTGVIVQLIKDRLQSK------SLGILEKWSEDLFSFFDPRDP 409
             DKK +K KKK VLGKGT  ++QLIKDR+ +       SL +L +W+  L   FDP+ P
Sbjct: 248 --DKKDKKSKKKKVLGKGTSAVLQLIKDRVTNGGGVSSDSLQVLAEWATQLLLLFDPKCP 305

Query: 410 EFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDT 469
            FD L+ K++EIVESNE RRLPK+PKGTRDFAKEQMA+REKAFSIIT VFKRHGA ALDT
Sbjct: 306 GFDSLVDKVKEIVESNEVRRLPKIPKGTRDFAKEQMAIREKAFSIITSVFKRHGATALDT 365

Query: 470 PVFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQIAK 529
           PVFE+RETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNG+TSFKR+QIAK
Sbjct: 366 PVFELRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGITSFKRYQIAK 425

Query: 530 VYRRDNPSKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLL 589
           VYRRDNPSKGRYREFYQCDFDIAG YE MGPDFE++K+LTELL+ELDIG YE+KLNHR L
Sbjct: 426 VYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDELDIGTYEVKLNHRKL 485

Query: 590 LDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGS 649
           LDGMLEICGVP EKFRTICSSIDKLDKQSFEQ+KKEMVEEKGLS ETAD+IG FVKERG 
Sbjct: 486 LDGMLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEKGLSNETADKIGNFVKERGP 545

Query: 650 PLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG- 708
           PL LLSKLRQEGS FL N+S++ ALD+LEI+F+ALEKSK I K+VFDLSLARGLDYYTG 
Sbjct: 546 PLELLSKLRQEGSEFLGNASSRAALDELEIMFKALEKSKAIGKIVFDLSLARGLDYYTGV 605

Query: 709 ----------VGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIR 758
                     VGSIAAGGRYDNL+GMF  KQVPAVGVSLGIERVF IMEQ ++E++Q+IR
Sbjct: 606 IYEAVFKGAQVGSIAAGGRYDNLVGMFSGKQVPAVGVSLGIERVFAIMEQQEEEKSQVIR 665

Query: 759 ATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVG 817
            TET+VLV ++GD KL LAAELVSELWNA +KAEY V  +  K + RA+ES IPWMV+VG
Sbjct: 666 PTETEVLVSIIGDDKLALAAELVSELWNAGIKAEYKVSTRKAKHLKRAKESGIPWMVLVG 725

Query: 818 ERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 852
           E+EL++G VKLKN++   EE + R+ FV+E++  L
Sbjct: 726 EKELSKGFVKLKNLEAGVEEEVDRTCFVQELKAEL 760

Length = 763
>gnl|CDD|223202 COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234586 PRK00037, hisS, histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|213530 TIGR00442, hisS, histidyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|238396 cd00773, HisRS-like_core, Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>gnl|CDD|237097 PRK12420, PRK12420, histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|232978 TIGR00443, hisZ_biosyn_reg, ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>gnl|CDD|178145 PLN02530, PLN02530, histidine-tRNA ligase Back     alignment and domain information
>gnl|CDD|237043 PRK12292, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>gnl|CDD|222097 pfam13393, tRNA-synt_His, Histidyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|226228 COG3705, HisZ, ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T) Back     alignment and domain information
>gnl|CDD|164576 CHL00201, syh, histidine-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238436 cd00859, HisRS_anticodon, HisRS Histidyl-anticodon binding domain Back     alignment and domain information
>gnl|CDD|202547 pfam03129, HGTP_anticodon, Anticodon binding domain Back     alignment and domain information
>gnl|CDD|183413 PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>gnl|CDD|183413 PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>gnl|CDD|237098 PRK12421, PRK12421, ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>gnl|CDD|215525 PLN02972, PLN02972, Histidyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|176460 cd00332, PAL-HAL, Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL) Back     alignment and domain information
>gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|238379 cd00738, HGTP_anticodon, HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS) Back     alignment and domain information
>gnl|CDD|238437 cd00860, ThrRS_anticodon, ThrRS Threonyl-anticodon binding domain Back     alignment and domain information
>gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>gnl|CDD|232967 TIGR00418, thrS, threonyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|236405 PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 854
PLN02972763 Histidyl-tRNA synthetase 100.0
KOG1936518 consensus Histidyl-tRNA synthetase [Translation, r 100.0
COG2986498 HutH Histidine ammonia-lyase [Amino acid transport 100.0
COG0124429 HisS Histidyl-tRNA synthetase [Translation, riboso 100.0
TIGR01225506 hutH histidine ammonia-lyase. This enzyme deaminat 100.0
TIGR03832507 Tyr_2_3_mutase tyrosine 2,3-aminomutase. Members o 100.0
PRK09367500 histidine ammonia-lyase; Provisional 100.0
cd00332444 PAL-HAL Phenylalanine ammonia-lyase (PAL) and hist 100.0
PLN02457706 phenylalanine ammonia-lyase 100.0
PF00221473 Lyase_aromatic: Aromatic amino acid lyase; InterPr 100.0
PLN02530487 histidine-tRNA ligase 100.0
PRK12420423 histidyl-tRNA synthetase; Provisional 100.0
TIGR01226680 phe_am_lyase phenylalanine ammonia-lyase. Members 100.0
CHL00201430 syh histidine-tRNA synthetase; Provisional 100.0
PRK12292391 hisZ ATP phosphoribosyltransferase regulatory subu 100.0
KOG0222715 consensus Phenylalanine and histidine ammonia-lyas 100.0
TIGR00442397 hisS histidyl-tRNA synthetase. This model finds a 100.0
PRK00037412 hisS histidyl-tRNA synthetase; Reviewed 100.0
PRK12421392 ATP phosphoribosyltransferase regulatory subunit; 100.0
TIGR00443314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 100.0
PF13393311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 100.0
PRK12295373 hisZ ATP phosphoribosyltransferase regulatory subu 100.0
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 100.0
PRK12293281 hisZ ATP phosphoribosyltransferase regulatory subu 100.0
COG3705390 HisZ ATP phosphoribosyltransferase involved in his 100.0
TIGR00418563 thrS threonyl-tRNA synthetase. This model represen 100.0
PRK00413638 thrS threonyl-tRNA synthetase; Reviewed 100.0
KOG10351351 consensus eIF-2alpha kinase GCN2 [Translation, rib 100.0
PRK12305575 thrS threonyl-tRNA synthetase; Reviewed 100.0
PRK12444639 threonyl-tRNA synthetase; Reviewed 100.0
PRK14799545 thrS threonyl-tRNA synthetase; Provisional 100.0
PRK09194565 prolyl-tRNA synthetase; Provisional 100.0
PLN02908686 threonyl-tRNA synthetase 100.0
TIGR00409568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 100.0
PRK12294272 hisZ ATP phosphoribosyltransferase regulatory subu 100.0
PRK12325439 prolyl-tRNA synthetase; Provisional 99.97
TIGR00408472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 99.95
PLN02837614 threonine-tRNA ligase 99.95
COG0441589 ThrS Threonyl-tRNA synthetase [Translation, riboso 99.95
PRK08661477 prolyl-tRNA synthetase; Provisional 99.95
PRK04173456 glycyl-tRNA synthetase; Provisional 99.94
PRK03991613 threonyl-tRNA synthetase; Validated 99.94
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 99.88
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 99.88
KOG1637560 consensus Threonyl-tRNA synthetase [Translation, r 99.87
KOG2324457 consensus Prolyl-tRNA synthetase [Translation, rib 99.85
COG0442500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 99.82
TIGR00389551 glyS_dimeric glycyl-tRNA synthetase, dimeric type. 99.82
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 99.78
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 99.76
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 99.75
PRK14894539 glycyl-tRNA synthetase; Provisional 99.73
PLN02734684 glycyl-tRNA synthetase 99.72
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 99.72
COG0423558 GRS1 Glycyl-tRNA synthetase (class II) [Translatio 99.68
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 99.66
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 99.51
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 99.49
PF12745 273 HGTP_anticodon2: Anticodon binding domain of tRNAs 99.4
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 99.4
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 99.28
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 99.24
PF0312994 HGTP_anticodon: Anticodon binding domain; InterPro 99.24
KOG2298599 consensus Glycyl-tRNA synthetase and related class 99.2
cd00858121 GlyRS_anticodon GlyRS Glycyl-anticodon binding dom 99.17
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 99.15
cd0086194 ProRS_anticodon_short ProRS Prolyl-anticodon bindi 99.11
TIGR00414418 serS seryl-tRNA synthetase. This model represents 99.11
cd0086091 ThrRS_anticodon ThrRS Threonyl-anticodon binding d 99.09
PRK05431425 seryl-tRNA synthetase; Provisional 99.02
cd00862202 ProRS_anticodon_zinc ProRS Prolyl-anticodon bindin 98.99
PRK14938387 Ser-tRNA(Thr) hydrolase; Provisional 98.99
cd02426128 Pol_gamma_b_Cterm C-terminal domain of mitochondri 98.9
cd0073894 HGTP_anticodon HGTP anticodon binding domain, as f 98.86
PRK00960517 seryl-tRNA synthetase; Provisional 98.82
PRK09350306 poxB regulator PoxA; Provisional 98.82
cd01594231 Lyase_I_like Lyase class I_like superfamily: conta 98.79
PLN02678448 seryl-tRNA synthetase 98.76
cd0085991 HisRS_anticodon HisRS Histidyl-anticodon binding d 98.7
PLN02320502 seryl-tRNA synthetase 98.64
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 98.5
KOG4163 551 consensus Prolyl-tRNA synthetase [Translation, rib 98.41
TIGR00415520 serS_MJ seryl-tRNA synthetase, Methanococcus janna 98.41
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 98.13
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 98.01
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 97.96
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 97.94
COG2269322 Truncated, possibly inactive, lysyl-tRNA synthetas 97.85
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 97.83
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 97.78
COG0172429 SerS Seryl-tRNA synthetase [Translation, ribosomal 97.59
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 97.59
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 97.44
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 97.42
TIGR00459583 aspS_bact aspartyl-tRNA synthetase, bacterial type 97.42
COG1190502 LysU Lysyl-tRNA synthetase (class II) [Translation 97.41
PRK06462335 asparagine synthetase A; Reviewed 97.28
PRK00476588 aspS aspartyl-tRNA synthetase; Validated 97.23
cd00775329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 97.2
PLN02850530 aspartate-tRNA ligase 97.14
PF00152335 tRNA-synt_2: tRNA synthetases class II (D, K and N 97.13
PRK12445505 lysyl-tRNA synthetase; Reviewed 97.09
PLN02903652 aminoacyl-tRNA ligase 97.06
TIGR00458428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 97.03
PRK12820 706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 97.02
PRK03932450 asnC asparaginyl-tRNA synthetase; Validated 97.0
PTZ00417585 lysine-tRNA ligase; Provisional 96.99
COG0173585 AspS Aspartyl-tRNA synthetase [Translation, riboso 96.97
PRK00484491 lysS lysyl-tRNA synthetase; Reviewed 96.95
PRK05159437 aspC aspartyl-tRNA synthetase; Provisional 96.94
KOG2509455 consensus Seryl-tRNA synthetase [Translation, ribo 96.91
PLN02502553 lysyl-tRNA synthetase 96.9
PTZ00385659 lysyl-tRNA synthetase; Provisional 96.89
TIGR00499496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 96.88
PTZ00401550 aspartyl-tRNA synthetase; Provisional 96.84
TIGR00457453 asnS asparaginyl-tRNA synthetase. In a multiple se 96.75
PTZ00425586 asparagine-tRNA ligase; Provisional 96.57
KOG2411628 consensus Aspartyl-tRNA synthetase, mitochondrial 96.36
PRK029831094 lysS lysyl-tRNA synthetase; Provisional 96.36
KOG2784483 consensus Phenylalanyl-tRNA synthetase, beta subun 96.29
TIGR00470533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 96.25
PLN02603565 asparaginyl-tRNA synthetase 96.23
PRK09616552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 95.92
PLN02221572 asparaginyl-tRNA synthetase 95.9
PLN02532633 asparagine-tRNA synthetase 95.84
COG0017435 AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl 95.63
KOG1885560 consensus Lysyl-tRNA synthetase (class II) [Transl 95.35
cd00769198 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR 94.88
PLN02788402 phenylalanine-tRNA synthetase 94.01
PRK07080317 hypothetical protein; Validated 92.26
KOG0554446 consensus Asparaginyl-tRNA synthetase (mitochondri 91.21
TIGR00471551 pheT_arch phenylalanyl-tRNA synthetase, beta subun 90.95
COG2024536 Phenylalanyl-tRNA synthetase alpha subunit (archae 90.57
PRK06253529 O-phosphoseryl-tRNA synthetase; Reviewed 88.97
KOG0556533 consensus Aspartyl-tRNA synthetase [Translation, r 87.35
PLN02265597 probable phenylalanyl-tRNA synthetase beta chain 85.69
TIGR00469460 pheS_mito phenylalanyl-tRNA synthetase, mitochondr 84.57
PF00221473 Lyase_aromatic: Aromatic amino acid lyase; InterPr 82.07
TIGR01225506 hutH histidine ammonia-lyase. This enzyme deaminat 81.01
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information 
Probab=100.00  E-value=8.7e-113  Score=997.35  Aligned_cols=735  Identities=69%  Similarity=1.055  Sum_probs=649.2

Q ss_pred             CCCceEEEecCCCCCCCccceeeeecCceeEEecchhhhhhhcCCCCCCCCCcceeeccCCcccchhhhHHHHHHHHHHH
Q 003041            4 RGSAAVITVGGKGSSLNSSSVYAISNGLAQVRVDSSALDRLSSTLPNQNPPPVTKFQIPIPKTLTLEESRAFLTVLLNKL   83 (854)
Q Consensus         4 ~~~~~~v~l~g~g~~lt~~~vygi~tG~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h~gvg~~l~~~~vRa~m~~rln~l   83 (854)
                      +++.++|||||||++||+..||.++||.++++|+                                              
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------   35 (763)
T PLN02972          2 AAESAVITLGGKGSSLTSASVYALATGVAQPRID----------------------------------------------   35 (763)
T ss_pred             CcccceEEecCCCccccHHHHHHHHhcccccccc----------------------------------------------
Confidence            4667789999999999999999999999988776                                              


Q ss_pred             hcCCCcchhHHHHHHHhhcccccceecceeeecccceeeeeccCcchhhhchhhhccccchhhhHHHHHHHhhccccccC
Q 003041           84 LLGSSIRTAFAVLISETLNSQTETLQFESVDVTEDERIVLEKLSLPSVLSGICAVLDHKSSALSAIIDAVAALSCEASGA  163 (854)
Q Consensus        84 ~~G~SG~~~~~~l~~~~~~~g~~~~~~~p~~l~~ke~~~l~~~~~~~~~~a~~~l~~~~a~~l~~~a~~~~Als~eal~g  163 (854)
                                                                 ++.              ..|.+..|.++|+||||.+|
T Consensus        36 -------------------------------------------~~~--------------~~~~~~~~~~~~~~~~~~~~   58 (763)
T PLN02972         36 -------------------------------------------SSA--------------TCLARVVDAVAALSCEAAKA   58 (763)
T ss_pred             -------------------------------------------cch--------------hHHHHHHHHHHhcccHhhhc
Confidence                                                       111              45678899999999999999


Q ss_pred             cccccccccCCCCccccccccccccceeeecCceeeeeeccccccccccccchHHHHHHHhhccceEEecccceecc---
Q 003041          164 DVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVGKMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKVGI---  240 (854)
Q Consensus       164 ~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gs~~~~~~D~yslRc~Pqv~Ga~~d~l~~~~~~~~~ElNs~~~~~~---  240 (854)
                      +.++||...+++.-..+..++||..|+.||.||++++..++-+|-.+|.|||..|++++.++..+.+||||++..++   
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (763)
T PLN02972         59 DVAAFDVLDSGDGLSDKDEADVAGDMKVLLNGSKLVGKAQAEVFSKIPKINGIFREAVKAVHAVVRIELNSPVKLGKRDA  138 (763)
T ss_pred             chhhccCCCCCCCcccccccchhccceeeecccchhhhhHHHHHhcCcccchHHHHHHHHHHHHHHHHhcCcccccccCc
Confidence            99999988888999999999999999999999999998899999999999999999999999999999999998755   


Q ss_pred             ccchhhHhhhHHHHHHHHHhhcccchhhhcccccccCcccccccccccCCCchhhhh-HHHHhhhccchhhHHHHHHHhh
Q 003041          241 SGTAKAVGANALALAAAIHNLGESSLYRAKMNLNSINSDGLRSLFEKDCSSGDNLRK-TYKLVLDANFEEDYVKFLHEAN  319 (854)
Q Consensus       241 ~~~~~~~~~~~d~l~~a~~~l~~~serr~~~l~~~~~~~gLp~fL~~~~~~~~~l~~-~~~~~~s~~~~edh~s~~~~~~  319 (854)
                      +..|..       |+.|+..||.+|..|..++++.+.+..|+..|+++. ..+++.. +++..+    .||.+|+.+.++
T Consensus       139 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~  206 (763)
T PLN02972        139 IQTGEG-------LARAVQALGKLSVARAKLCLEVIGDEELRKKLTSGV-VLDNLYGLLLKVSI----EEDAVSFLHGVN  206 (763)
T ss_pred             chhhHH-------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHhhhcce-eehhhhhhhhheee----cchHHHHHHHHH
Confidence            222322       678999999999999999999999999999999985 3444444 444443    899999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHhhccccccccceecCCcc---eecchhhhhhccccccCcchhhHHHHHHHhcc--ccchh-H
Q 003041          320 VLLGMVWKIVTWEAVLAFVALEGGELLGEKVNGGDV---VVDKKSEKKKKKAVLGKGTGVIVQLIKDRLQS--KSLGI-L  393 (854)
Q Consensus       320 ~~~~~~~~ila~E~~~a~~al~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~~~-~  393 (854)
                      ..|..+|+|+|||..+|+.+||+.|+..++++..++   +.+|++||+|||+++|+++..+..+.......  |.... |
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (763)
T PLN02972        207 NLLGIVWDIVAWEAAAAFAVLEGGELIEKPQAEAENEAGKSDKKDKKSKKKKVLGKGTSAVLQLIKDRVTNGGGVSSDSL  286 (763)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccchhhhhhccccchhhhhhhhhccccccchhhhhhhhcccccccccchhHH
Confidence            999999999999999999999999999877655543   34667888999999999999999988866553  22233 3


Q ss_pred             ---hhhhhcccccCCCCCCchHHHHHHHHHHHhhcccCCCCCCCccchhhHHhHHHHHHHhHHHHHHHHHhcCccccCcc
Q 003041          394 ---EKWSEDLFSFFDPRDPEFDGLLTKIREIVESNESRRLPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTP  470 (854)
Q Consensus       394 ---~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~l~~if~~~G~~eI~tP  470 (854)
                         ..+...+..++.|.+|...+...++.++...++.++.+++|+||+||+|.++..+++++++++++|++|||++|+||
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~PkGtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TP  366 (763)
T PLN02972        287 QVLAEWATQLLLLFDPKCPGFDSLVDKVKEIVESNEVRRLPKIPKGTRDFAKEQMAIREKAFSIITSVFKRHGATALDTP  366 (763)
T ss_pred             HHHHhhccchhhcccccccchhHHHHHHHHhhcccchhcccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCC
Confidence               23333556678899998888888877765554557888999999999999999999999999999999999999999


Q ss_pred             hhHhHHhhhhccCCCchhhhhhhhccCCceeeecccccchhhhhhhccccchhhhhhhhhhcccCCCCcccccccccccc
Q 003041          471 VFEMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQIAKVYRRDNPSKGRYREFYQCDFD  550 (854)
Q Consensus       471 ~le~~e~~~~~~g~~~k~~y~~~D~~G~~l~LRpDlT~~~aR~~a~~~~~p~K~y~ig~VfR~e~p~~Gr~REf~Q~d~e  550 (854)
                      +||+.|+|.+++|++.++||+|.|++|+.++||||+|+|+||++++|...|+|+||+|+|||+|+|++||+|||+|||||
T Consensus       367 vfE~~Ell~~k~Ged~k~mY~f~D~gGr~LaLRPDlTvPiAR~vA~n~~~p~KrYyiG~VFR~e~pqkGR~REF~Q~G~E  446 (763)
T PLN02972        367 VFELRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGITSFKRYQIAKVYRRDNPSKGRYREFYQCDFD  446 (763)
T ss_pred             cccchHHhhcccCcchhheEEEECCCCCEEEeCCCChHHHHHHHHhCCCCcceEEEeccEEecCCCCCCCCccceEEeEE
Confidence            99999999888898888999999999999999999999999999998877999999999999999999999999999999


Q ss_pred             ccccccccCCChhhHHHHHHHhhhcCCCcceeeechhhhhhhhhhhcCCCccchhhhccchhhhhhhhHHHHHHHHHHhc
Q 003041          551 IAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEK  630 (854)
Q Consensus       551 iig~~~~~~aDaEvI~l~~eil~~Lgl~~~~i~Lnh~~ll~~il~~~gi~~~~~~~v~~~l~kl~k~~~~~i~~~L~~~~  630 (854)
                      |||..+++.+|+|||.++.++|+.||+++|.|+|||+++++.+++.||+++++++.+++.++++++..|++++++|.+.+
T Consensus       447 IIG~~~~~~aDAEVI~La~E~L~~LGi~df~I~INh~~iL~~ILe~lgi~~e~~~~v~~aIdkldk~~le~vk~eL~~~~  526 (763)
T PLN02972        447 IAGVYEPMGPDFEIIKVLTELLDELDIGTYEVKLNHRKLLDGMLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEK  526 (763)
T ss_pred             EEcCCCcchhhHHHHHHHHHHHHhCCCCceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhhc
Confidence            99976666689999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             CcceeecccccccccccCChHHHHHHHhhhcchhhcccccccccchHHHHHHHhhhccccceeeeeccccccCccccc--
Q 003041          631 GLSVETADRIGTFVKERGSPLVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTG--  708 (854)
Q Consensus       631 gl~~~~~~~L~~l~~~~g~~~~vl~~l~~~~~~~~~~~~~~~al~~L~~l~~~l~~~gv~~~I~~D~sl~rgl~YYtG--  708 (854)
                      |++.+.++.|.+|+.++|++.++++++......+..+....+++++|+.++++|+.+|+..+|.|||+++||++||||  
T Consensus       527 gLs~e~~~~L~~L~~L~G~~~evLd~L~~~~~~l~~~~~~~~aL~eL~~L~~~L~~~gv~~~I~fDlsLvRGLDYYTGiV  606 (763)
T PLN02972        527 GLSNETADKIGNFVKERGPPLELLSKLRQEGSEFLGNASSRAALDELEIMFKALEKSKAIGKIVFDLSLARGLDYYTGVI  606 (763)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhHhhccChHHHHHHHHHHHHHHHHHhcCCCccEEECCcccCCCcccCceE
Confidence            999999999999999999988899988754334455555678999999999999999998889999999999999999  


Q ss_pred             ---------ccccccCCcccccccccCCcccCccceehhhHHHHHHHHHHHHhhhhccccchhhhhhhhcCC-CccchHH
Q 003041          709 ---------VGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAE  778 (854)
Q Consensus       709 ---------~~~Ia~GGRYD~Li~~fg~~~~pAvGfsigieRL~~~L~~~~~~~~~~~~~~~~dVlV~~~~~-~~~~a~~  778 (854)
                               .++|++|||||+|++.|++++.|||||+|++|||+.++.+.+......|.+.++||+|++.++ .+.++++
T Consensus       607 FE~~~~g~~~gsIagGGRYD~Lv~~FgG~~vPAVGFSiGIERL~~~L~~~~~~~~~~~~~~~~dVlV~s~g~~~l~~alk  686 (763)
T PLN02972        607 YEAVFKGAQVGSIAAGGRYDNLVGMFSGKQVPAVGVSLGIERVFAIMEQQEEEKSQVIRPTETEVLVSIIGDDKLALAAE  686 (763)
T ss_pred             EEEEEcCCccceeeecCCchhHHHhcCCCCCCEEEEEecHHHHHHHHHHcccCCCCCCCCCCCcEEEEEeCHHHHHHHHH
Confidence                     158999999999999998889999999999999999987643211112445668999999886 6788999


Q ss_pred             HHHHHhhhccceeeeehhhHHHHHhhhhcCCCceEEEeecccccccceeeeccccchhhhcchhhhHHHHHHhhc
Q 003041          779 LVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN  853 (854)
Q Consensus       779 la~~Lr~~GI~ael~~~~~l~k~l~~A~~~gi~~iviIg~~e~~~g~V~Vk~l~~~~e~~v~~~elv~~L~~~l~  853 (854)
                      ++++||++||+|++....++++++++|++.|++|+||+|++|+++|+|+|||+.+++|.+|++++++++|+++|.
T Consensus       687 ia~~LR~aGI~aE~~~~~kl~kq~~~A~k~gi~~vVIIGe~E~~~g~VkVKnL~tgeq~~V~~delv~~l~~~l~  761 (763)
T PLN02972        687 LVSELWNAGIKAEYKVSTRKAKHLKRAKESGIPWMVLVGEKELSKGFVKLKNLEAGVEEEVDRTCFVQELKAELL  761 (763)
T ss_pred             HHHHHHHCCCEEEEeCCCCHHHHHHHHHHCCCCEEEEECchHHhCCeEEEEECCCCcceEeeHHHHHHHHHHHhc
Confidence            999999999999987667799999999999999999999999999999999999999999999999999998874

>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG2986 HutH Histidine ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01225 hutH histidine ammonia-lyase Back     alignment and domain information
>TIGR03832 Tyr_2_3_mutase tyrosine 2,3-aminomutase Back     alignment and domain information
>PRK09367 histidine ammonia-lyase; Provisional Back     alignment and domain information
>cd00332 PAL-HAL Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL) Back     alignment and domain information
>PLN02457 phenylalanine ammonia-lyase Back     alignment and domain information
>PF00221 Lyase_aromatic: Aromatic amino acid lyase; InterPro: IPR001106 This entry represents phenylalanine ammonia-lyase (PAL; 4 Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR01226 phe_am_lyase phenylalanine ammonia-lyase Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>KOG0222 consensus Phenylalanine and histidine ammonia-lyase [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>PRK14894 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02734 glycyl-tRNA synthetase Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [] Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis Back     alignment and domain information
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea Back     alignment and domain information
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional Back     alignment and domain information
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity Back     alignment and domain information
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS) Back     alignment and domain information
>PRK00960 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain Back     alignment and domain information
>PLN02320 seryl-tRNA synthetase Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>PRK00476 aspS aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02903 aminoacyl-tRNA ligase Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00457 asnS asparaginyl-tRNA synthetase Back     alignment and domain information
>PTZ00425 asparagine-tRNA ligase; Provisional Back     alignment and domain information
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK02983 lysS lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>PLN02603 asparaginyl-tRNA synthetase Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>PLN02221 asparaginyl-tRNA synthetase Back     alignment and domain information
>PLN02532 asparagine-tRNA synthetase Back     alignment and domain information
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information
>PRK07080 hypothetical protein; Validated Back     alignment and domain information
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain Back     alignment and domain information
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial Back     alignment and domain information
>PF00221 Lyase_aromatic: Aromatic amino acid lyase; InterPro: IPR001106 This entry represents phenylalanine ammonia-lyase (PAL; 4 Back     alignment and domain information
>TIGR01225 hutH histidine ammonia-lyase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query854
4g85_A517 Crystal Structure Of Human Hisrs Length = 517 1e-134
4g84_A464 Crystal Structure Of Human Hisrs Length = 464 1e-134
3net_A465 Crystal Structure Of Histidyl-Trna Synthetase From 2e-44
3hrk_A456 Histidyl-Trna Synthetase From Trypanosoma Cruzi (Hi 1e-28
3hri_A456 Histidyl-Trna Synthetase (Apo) From Trypanosoma Bru 1e-27
1wu7_A434 Crystal Structure Of Histidyl-Trna Synthetase From 3e-23
1adj_A421 Histidyl-Trna Synthetase In Complex With Histidine 2e-21
3rac_A373 Crystal Strucutre Of Histidine--Trna Ligase Subunit 2e-18
1htt_A423 Histidyl-Trna Synthetase Length = 423 3e-14
2el9_A431 Crystal Structure Of E.Coli Histidyl-Trna Synthetas 3e-14
1kmm_A424 Histidyl-Trna Synthetase Complexed With Histidyl-Ad 3e-14
4e51_A467 Crystal Structure Of A Histidyl-Trna Synthetase His 4e-14
3od1_A400 The Crystal Structure Of An Atp Phosphoribosyltrans 2e-12
1qe0_A420 Crystal Structure Of Apo S. Aureus Histidyl-Trna Sy 1e-10
1z7m_A344 Atp Phosphoribosyl Transferase (hiszg Atp-prtase) F 2e-05
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs Length = 517 Back     alignment and structure 
Iteration: 1

 Score =  476 bits (1225), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 255/474 (53%), Positives = 337/474 (71%), Gaps = 41/474 (8%)
Query: 415 LTKIREIVESNESRR--LPKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVF 472
           L K++  +  +ES++  + K PKGTRD++  QMAVREK F +I   FKRHGA  +DTPVF
Sbjct: 49  LLKLKAQLGPDESKQKFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVF 108
Query: 473 EMRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGLTSFKRHQIAKVYR 532
           E++ETLMGKYGEDSKLIYDL DQGGEL SLRYDLTVPFARY+AMN LT+ KR+ IAKVYR
Sbjct: 109 ELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYR 168
Query: 533 RDNP--SKGRYREFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLL 590
           RDNP  ++GRYREFYQCDFDIAG ++ M PD E +KI+ E+L+ L IGD+ +K+N R +L
Sbjct: 169 RDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRIL 228
Query: 591 DGMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSP 650
           DGM  ICGV   KFRTICSS+DKLDK S+E++K EMV EKGL+ E ADRIG +V++ G  
Sbjct: 229 DGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGG- 287
Query: 651 LVLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYT--- 707
           + L+ +L Q+  L  +N  A   L DL++LF+ L      DK+ FDLSLARGLDYYT   
Sbjct: 288 VSLVEQLLQDPKLS-QNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVI 346
Query: 708 -----------------GVGSIAAGGRYDNLIGMFGTK--QVPAVGVSLGIERVFTIMEQ 748
                            GVGS+AAGGRYD L+GMF  K  +VP VG+S+G+ER+F+I+EQ
Sbjct: 347 YEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQ 406
Query: 749 IQKERNQIIRATETQVLVG-----LLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLID 803
             +   + IR TETQVLV      LL ++L    +LVSELW+A +KAE +++KK  KL++
Sbjct: 407 RLEALEEKIRTTETQVLVASAQKKLLEERL----KLVSELWDAGIKAE-LLYKKNPKLLN 461
Query: 804 R---ARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 854
           +     E+ IP + I+GE+EL +G++KL+++ + +E  + R + VEEI+RR  Q
Sbjct: 462 QLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ 515
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs Length = 464 Back     alignment and structure
>pdb|3NET|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc Sp. Pcc 7120 Length = 465 Back     alignment and structure
>pdb|3HRK|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi (Histidyl-Adenylate Complex) Length = 456 Back     alignment and structure
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei Length = 456 Back     alignment and structure
>pdb|1WU7|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Thermoplasma Acidophilum Length = 434 Back     alignment and structure
>pdb|1ADJ|A Chain A, Histidyl-Trna Synthetase In Complex With Histidine Length = 421 Back     alignment and structure
>pdb|3RAC|A Chain A, Crystal Strucutre Of Histidine--Trna Ligase Subunit From Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius Dsm 446 Length = 373 Back     alignment and structure
>pdb|1HTT|A Chain A, Histidyl-Trna Synthetase Length = 423 Back     alignment and structure
>pdb|2EL9|A Chain A, Crystal Structure Of E.Coli Histidyl-Trna Synthetase Complexed With A Histidyl-Adenylate Analogue Length = 431 Back     alignment and structure
>pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate Length = 424 Back     alignment and structure
>pdb|4E51|A Chain A, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From Burkholderia Thailandensis Bound To Histidine Length = 467 Back     alignment and structure
>pdb|3OD1|A Chain A, The Crystal Structure Of An Atp Phosphoribosyltransferase Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus Halodurans C Length = 400 Back     alignment and structure
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna Synthetase Length = 420 Back     alignment and structure
>pdb|1Z7M|A Chain A, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From Lactococcus Lactis Length = 344 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query854
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 1e-171
3lc0_A456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 1e-154
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 1e-116
1wu7_A434 Histidyl-tRNA synthetase; ligase, structural genom 1e-116
3od1_A400 ATP phosphoribosyltransferase regulatory subunit; 7e-90
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 7e-52
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 2e-48
1h4v_B421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 9e-44
1qe0_A420 Histidyl-tRNA synthetase; class II tRNA synthetase 3e-42
1htt_A423 Histidyl-tRNA synthetase; complex (tRNA synthetase 3e-41
4e51_A467 Histidine--tRNA ligase; seattle structural genomic 9e-39
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 2e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 2e-04
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Length = 465 Back     alignment and structure
 Score =  501 bits (1293), Expect = e-171
 Identities = 128/456 (28%), Positives = 225/456 (49%), Gaps = 37/456 (8%)

Query: 431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDSKLIY 490
              P G  +F   +  +       I  V++ +G   ++TP  E  E L  K  +   +IY
Sbjct: 12  FSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIY 71

Query: 491 DL---------------ADQGGELCSLRYDLTVPFARYVAMNG--LTS-FKRHQIAKVYR 532
            L                D G E  +L++D TVP A Y+A +   LT  F R+Q+  V+R
Sbjct: 72  GLEPILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFR 131

Query: 533 RDNPSKGRYREFYQCDFDIAGQYER-MGPDFEVVKILTELLNELDIGDYEIKLNHRLLLD 591
            +    GR+R+F QCD D+ G+ +  +  D ++  I+TE+   ++IGD+ I++N+R +L 
Sbjct: 132 GERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAVNIGDFVIRINNRKVLT 191

Query: 592 GMLEICGVPSEKFRTICSSIDKLDKQSFEQIKKEMVEEKGLSVETADRIGTFVKERGSPL 651
           G  +   +   + ++  S ID L+K    ++K E+ E++G++ E   +I  FVK  GS  
Sbjct: 192 GFFQSLNISETQIKSCISIIDNLEKIGEAKVKLEL-EKEGINPEQTQKIIDFVKIDGSVD 250

Query: 652 VLLSKLRQEGSLFLENSSAKLALDDLEILFQALEKSKCIDK-VVFDLSLARGLDYYTGV- 709
            +L KL+       E+    L + +LE +   +      DK    DL++ARGL+YYTG  
Sbjct: 251 DVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTV 310

Query: 710 -----------GSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIR 758
                      GSI +GGRY+ L+G F  +++P VG+S+G+ R+ + +   +      + 
Sbjct: 311 YETTLIGHEALGSICSGGRYEELVGTFIGEKMPGVGISIGLTRLISRLL--KAGILNTLP 368

Query: 759 ATETQVLVGLLGDKLPLAA-ELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIV 816
            T  QV+V  + D+L     ++  +L  A +        +++ K    A +  I + VI+
Sbjct: 369 PTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVII 428

Query: 817 GERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 852
           G  E       LK++ + ++  ++ ++  EEI+RRL
Sbjct: 429 GADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Length = 456 Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Length = 373 Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Length = 434 Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Length = 400 Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Length = 344 Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Length = 275 Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Length = 421 Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Length = 420 Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Length = 423 Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Length = 467 Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* Length = 290 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Length = 401 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query854
3unv_A547 ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea 100.0
1gkm_A507 Histidase, HAL, histidine ammonia-lyase; histidine 100.0
2qve_A526 Tyrosine aminomutase; MIO, enediyne, transferase; 100.0
2nyn_A565 Phenylalanine/histidine ammonia-lyase; methylidene 100.0
4g85_A517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 100.0
4g84_A464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 100.0
2o6y_A521 Putative histidine ammonia-lyase; methylidene imid 100.0
1w27_A714 Phenylalanine ammonia-lyase 1; phenylpropanoid met 100.0
2yii_A705 Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxu 100.0
1y2m_A716 Phenylalanine ammonia-lyase; alpha helices; HET: M 100.0
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 100.0
3lc0_A456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 100.0
1wu7_A434 Histidyl-tRNA synthetase; ligase, structural genom 100.0
3od1_A400 ATP phosphoribosyltransferase regulatory subunit; 100.0
4e51_A467 Histidine--tRNA ligase; seattle structural genomic 100.0
1h4v_B421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 100.0
1htt_A423 Histidyl-tRNA synthetase; complex (tRNA synthetase 100.0
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 100.0
1qe0_A420 Histidyl-tRNA synthetase; class II tRNA synthetase 100.0
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 100.0
2j3l_A572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 100.0
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 100.0
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 100.0
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 100.0
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 100.0
3a32_A471 Probable threonyl-tRNA synthetase 1; aeropyrum per 100.0
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 100.0
1hc7_A477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1nj8_A459 Proline-tRNA synthetase, proline--tRNA ligase; cla 100.0
3uh0_A460 Threonyl-tRNA synthetase, mitochondrial; threonine 100.0
2zt5_A693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 100.0
1nj1_A501 PROR, proline-tRNA synthetase, proline--tRNA ligas 100.0
1ati_A505 Glycyl-tRNA synthetase; protein biosynthesis, liga 99.97
4hvc_A 519 Bifunctional glutamate/proline--tRNA ligase; ligas 99.96
3ial_A 518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 99.95
1g5h_A454 Mitochondrial DNA polymerase accessory subunit; in 99.88
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 99.85
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 99.66
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 99.6
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 99.59
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 99.55
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 99.49
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 99.41
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 99.39
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 99.36
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 99.3
3err_A536 Fusion protein of microtubule binding domain from 99.25
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 99.21
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 99.2
1v95_A130 Nuclear receptor coactivator 5; coactivator indepe 99.03
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 98.81
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 98.81
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 98.79
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 98.76
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 98.61
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 98.26
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 98.19
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 97.99
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 97.97
2du3_A534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 97.89
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 97.81
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 97.69
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 97.62
2du7_A549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 97.58
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 97.46
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 97.23
1l0w_A580 Aspartyl-tRNA synthetase; space-grown crystal, dim 97.17
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 97.15
1c0a_A585 Aspartyl tRNA synthetase; protein-RNA complex, lig 97.14
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 97.06
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 97.04
2odr_B648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 97.02
2odr_A 665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 97.01
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 97.0
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.94
4ah6_A617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 96.8
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 96.79
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 96.47
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 96.34
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 96.33
2rhq_B795 Phenylalanyl-tRNA synthetase beta chain; heterotet 95.79
1b7y_B785 Phers, protein (phenylalanyl-tRNA synthetase); enz 94.79
3cmq_A415 Phenylalanyl-tRNA synthetase, mitochondrial; class 93.05
3pco_B795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 90.03
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans} Back     alignment and structure
Probab=100.00  E-value=1e-79  Score=699.54  Aligned_cols=310  Identities=17%  Similarity=0.127  Sum_probs=282.9

Q ss_pred             cceeeeecC---ceeEEecchhhhhhhcCCCCCCCCCcceee-ccCCcccchhhhHHHHHHHHHHHhcCCCcch-hHHHH
Q 003041           22 SSVYAISNG---LAQVRVDSSALDRLSSTLPNQNPPPVTKFQ-IPIPKTLTLEESRAFLTVLLNKLLLGSSIRT-AFAVL   96 (854)
Q Consensus        22 ~~vygi~tG---~a~~~i~~~~~~~lq~~~~~~~~~~~~~~h-~gvg~~l~~~~vRa~m~~rln~l~~G~SG~~-~~~~l   96 (854)
                      .+|||||||   +++++|+++++++||+|++        +|| ||||++||+++|||||++|+|+|++||||++ .+++.
T Consensus        75 ~~vYGvnTGfG~~a~~~i~~~~~~~LQ~nLi--------rsHa~GvG~~l~~~~vRa~mllRlnsL~~G~SGVr~evve~  146 (547)
T 3unv_A           75 RVIYGVNTSMGGFVNYIVPIAKASELQNNLI--------NAVATNVGKYFDDTTVRATMLARIVSLSRGNSAISIVNFKK  146 (547)
T ss_dssp             CCCBTTTBCCGGGTTCBCCGGGHHHHHHHHH--------HHTCCCEEEECCHHHHHHHHHHHHHHHHTSCSCCCHHHHHH
T ss_pred             CceeceecCCCCccCCccCHHHHHHHHHHHH--------HHHhcCCCCCCCHHHHHHHHHHHHHHHccCCCCcCHHHHHH
Confidence            369999999   7999999999999999999        999 9999999999999999999999999999944 45555


Q ss_pred             H---------HHhhcccccce------ec----------------------------ceeeecccceeeeeccCcchhhh
Q 003041           97 I---------SETLNSQTETL------QF----------------------------ESVDVTEDERIVLEKLSLPSVLS  133 (854)
Q Consensus        97 ~---------~~~~~~g~~~~------~~----------------------------~p~~l~~ke~~~l~~~~~~~~~~  133 (854)
                      +         |.+|.+||||+      |+                            +|+.|++|||++|.| + |++|+
T Consensus       147 L~~lLN~~i~P~VP~~GSVGADLaPLahial~LiGeg~v~~~G~~~~a~eaL~~aGl~Pl~L~~KEGLALiN-G-T~~~t  224 (547)
T 3unv_A          147 LIEIYNQGIVPCIPEKGSLGXDLGPLAAIALVCTGQWKARYQGEQMSGAMALEKAGISPMELSFKEGLALIN-G-TSAMV  224 (547)
T ss_dssp             HHHHHHTTCEECCEEECCCSSCHHHHHHHHHHHTTCSEEEETTEEEEHHHHHHHHTCCCCCCCTTHHHHHHS-S-SHHHH
T ss_pred             HHHHHhCCCcccCCCCCCCCccchHHHHHHHHHhCCCceEECCEEeeHHHHHHHcCCCCccCCcchHHHHhc-c-cHHHH
Confidence            5         45677777775      21                            699999999744433 3 67999


Q ss_pred             chhhhccccchhhhHHHHHHHhhccccccCcccccccccCCCCccccccccccccceeeecCceeee-------------
Q 003041          134 GICAVLDHKSSALSAIIDAVAALSCEASGADVAAFNSIDSGDGFTAKEEIGVAGDLKVLLNGSKLVG-------------  200 (854)
Q Consensus       134 a~~~l~~~~a~~l~~~a~~~~Als~eal~g~~~~f~~~~~~~~rph~gq~~~A~~~r~lL~gs~~~~-------------  200 (854)
                      |+++++++++++|+++||+++|||+||++|+++||||++ |++||||||+++|++||.+|+||+++.             
T Consensus       225 a~a~lal~~a~~L~~~a~~~~Als~Eal~G~~~~fd~~i-h~~Rph~GQ~~~A~~ir~lL~gS~l~~~~~~~r~~~~~~~  303 (547)
T 3unv_A          225 GLGVLLYDEVKRLFDTYLTVTSLSIEGLHGKTKPFEPAV-HRMKPHQGQLEVATTIWETLADSSLAVNEHEVEKLIAEEM  303 (547)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBSGGGCHHH-HTTSCCHHHHHHHHHHHHHTTTCSSSBCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhcChHH-HhhCCCchHHHHHHHHHHHhcCCccccccccccccccccc
Confidence            999999999999999999999999999999999999998 599999999999999999999999864             


Q ss_pred             ----------eeccccccccccccchHHHHHHHhhccceEEeccccee----c---c--ccc---hhhHhhhHHHHHHHH
Q 003041          201 ----------KMKSEDILEIPKINGKLREVVKSVHSSTRVELNSSVKV----G---I--SGT---AKAVGANALALAAAI  258 (854)
Q Consensus       201 ----------~~D~yslRc~Pqv~Ga~~d~l~~~~~~~~~ElNs~~~~----~---~--~~~---~~~~~~~~d~l~~a~  258 (854)
                                -||||||||+||||||++|+|+++++++++||||++|.    +   +  |||   |++++++||+|++|+
T Consensus       304 ~~~~~~~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~~~le~ElNS~tDNPli~~~~g~v~sgGNFhg~pva~amD~l~iAl  383 (547)
T 3unv_A          304 DGLVKASNHQIEDAYSIRCTPQILGPVADTLKNIKQTLTNELNSSNDNPLIDQTTEEVFHNGHFHGQYVSMAMDHLNIAL  383 (547)
T ss_dssp             SSSCCCCSCCSSCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSEEETTTTEEECCCTTCTHHHHHHHHHHHHHH
T ss_pred             ccccccccCcCcCCccccchhHHhHHHHHHHHHHHHHHHHHHccCCCCCceeCCCCceecCCCccchhHHHHHHHHHHHH
Confidence                      36999999999999999999999999999999999983    2   2  665   888899999999999


Q ss_pred             HhhcccchhhhcccccccCcccccccccc-c-----------------CCCchhhhh---HHHHhhhccchhhHHHHHHH
Q 003041          259 HNLGESSLYRAKMNLNSINSDGLRSLFEK-D-----------------CSSGDNLRK---TYKLVLDANFEEDYVKFLHE  317 (854)
Q Consensus       259 ~~l~~~serr~~~l~~~~~~~gLp~fL~~-~-----------------~~~~~~l~~---~~~~~~s~~~~edh~s~~~~  317 (854)
                      +++|++||||+++|+||.+|+|||+||++ +                 ++||+.|++   +||+|||++ ||||||||+.
T Consensus       384 a~lg~iserR~~~Lvnp~~s~GLP~fL~~~~~glnsGfmi~Q~taaal~sE~k~La~PaSvds~pts~~-qED~vSmg~~  462 (547)
T 3unv_A          384 VTMMNLANRRIDRFMDKSNSNGLPPFLCAENAGLRLGLMGGQFMTASITAESRASCMPMSIQSLSTTGD-FQDIVSFGLV  462 (547)
T ss_dssp             HHHHHHHHHHHHHHHCTTTTTSCCGGGCCSSBTTBCTTTTHHHHHHHHHHHHHHTCCCSTTCCCCBTTT-TBCSCCCHHH
T ss_pred             HHHHHHHHHHHHHhcCccccCCCChhhcCCCCCcccccHHHHHHHHHHHHHHHHhcCCCccCCccccCc-chhhHhhHHH
Confidence            99999999999999999999999999987 2                 589999998   899999999 9999999999


Q ss_pred             hhhhh----hhHHHHHHHHHHHHHhhcccc
Q 003041          318 ANVLL----GMVWKIVTWEAVLAFVALEGG  343 (854)
Q Consensus       318 ~~~~~----~~~~~ila~E~~~a~~al~~~  343 (854)
                      +||++    +|+++|+|||+++|+||+|+|
T Consensus       463 aArk~~~~ven~~~vlAiEll~a~QAidlr  492 (547)
T 3unv_A          463 AARRVREQLKNLKYVFSFELLCACQAVDIR  492 (547)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99997    779999999999999999998
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation; HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB: 1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A Back     alignment and structure
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247; 2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A* 2ohy_A* 3kdz_A* 3kdy_A* Back     alignment and structure
>2nyn_A Phenylalanine/histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.90A {Anabaena variabilis} PDB: 3czo_A* 2nyf_A* Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.50A {Rhodobacter sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A* 2o7f_A* Back     alignment and structure
>1w27_A Phenylalanine ammonia-lyase 1; phenylpropanoid metabolism, MIO; HET: MDO; 1.7A {Petroselinum crispum} SCOP: a.127.1.2 Back     alignment and structure
>2yii_A Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxus wallichiana var} PDB: 3nz4_A* Back     alignment and structure
>1y2m_A Phenylalanine ammonia-lyase; alpha helices; HET: MSE; 1.60A {Rhodosporidium toruloides} PDB: 1t6j_A* 1t6p_A* Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1 Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Back     alignment and structure
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Back     alignment and structure
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 854
d1h4vb2324 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisR 7e-50
d1qe0a2325 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisR 3e-49
d1kmma2322 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisR 5e-48
d1wu7a2327 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisR 6e-47
d1usya_275 d.104.1.1 (A:) ATP phosphoribosyltransferase regul 7e-45
d1z7ma1318 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase 2e-44
d1h4vb196 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (His 5e-11
d1qe0a195 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (His 8e-11
d1kmma199 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (His 7e-09
d1wu7a197 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (His 2e-08
d1qf6a1110 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (Thr 1e-06
d1g5ha1127 c.51.1.1 (A:343-469) The aaRS-like accessory subun 2e-06
d1nyra1113 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (Thr 2e-05
d1atia1111 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS 2e-05
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Length = 324 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Histidyl-tRNA synthetase (HisRS)
species: Thermus thermophilus [TaxId: 274]

 Score =  176 bits (447), Expect = 7e-50
 Identities = 76/340 (22%), Positives = 137/340 (40%), Gaps = 46/340 (13%)

Query: 431 PKLPKGTRDFAKEQMAVREKAFSIITEVFKRHGAMALDTPVFEMRETLMGKYGEDS---- 486
            +  +GT+D   +++ + ++  +   +V +  GA+ L TP+FE  +      G  +    
Sbjct: 2   ARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVR 61

Query: 487 KLIYDLADQGGELCSLRYDLTVPFARYVAMN----GLTSFKRHQIAKVYRRDNPSKGRYR 542
           K ++   D+GG   +LR + T    R    +         +      ++R + P KGRYR
Sbjct: 62  KEMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYR 121

Query: 543 EFYQCDFDIAGQYERMGPDFEVVKILTELLNELDIGDYEIKLNHRLLLDGMLEICGVPSE 602
           +F+Q +++  G    +  D E V +L E L EL +   ++KL+     +          E
Sbjct: 122 QFHQVNYEALGSENPI-LDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAYLRE 180

Query: 603 KFRTICSSIDKLDKQSFEQIKKEMVEEKGLSV--ETADRIGTFVKERGSPLVLLSKLRQE 660
                        +++  +  KE +EE  + +    ++R    +KE G   +L       
Sbjct: 181 VL--------SPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPML------- 225

Query: 661 GSLFLENSSAKLALDDLEILFQALEKSKCIDKVVFDLSLARGLDYYTGV----------- 709
              FL   +     +    L +             + +L RGLDYY              
Sbjct: 226 --DFLGEEARAHLKEVERHLER------LSVPYELEPALVRGLDYYVRTAFEVHHEEIGA 277

Query: 710 -GSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQ 748
             ++  GGRYD L  + G  +VP VG + G+ERV   +E 
Sbjct: 278 QSALGGGGRYDGLSELLGGPRVPGVGFAFGVERVALALEA 317
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Length = 325 Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Length = 322 Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 327 Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Length = 275 Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Length = 318 Back     information, alignment and structure
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 96 Back     information, alignment and structure
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 95 Back     information, alignment and structure
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 99 Back     information, alignment and structure
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 97 Back     information, alignment and structure
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 110 Back     information, alignment and structure
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 127 Back     information, alignment and structure
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 113 Back     information, alignment and structure
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 111 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query854
d1gkma_509 Histidine ammonia-lyase (HAL) {Pseudomonas putida 100.0
d1w27a_692 Phenylalanine ammonia-lyase, PAL {Parsley (Petrose 100.0
d1t6ja_678 Phenylalanine ammonia-lyase, PAL {Fungi (Rhodospor 100.0
d1wu7a2327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 100.0
d1z7ma1318 ATP phosphoribosyltransferase regulatory subunit H 100.0
d1h4vb2324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 100.0
d1qe0a2325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 100.0
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 100.0
d1usya_275 ATP phosphoribosyltransferase regulatory subunit H 100.0
d1qf6a4291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 99.55
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 99.53
d1nyra4291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 99.5
d1wu7a197 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.47
d1qf6a1110 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 99.47
d1nyra1113 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 99.47
d1kmma199 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.43
d1b76a2331 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 99.4
d1qe0a195 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.37
d1h4vb196 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.37
d1nj1a3265 Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth 99.35
d1nj1a1127 Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Me 99.2
d1hc7a2272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 99.17
d1g5ha1127 The aaRS-like accessory subunit of mitochondrial p 99.17
d1atia1111 Glycyl-tRNA synthetase (GlyRS), C-terminal domain 99.1
d1nj8a1126 Prolyl-tRNA synthetase (ProRS) domain {Archaeon (M 99.06
d1hc7a1127 Prolyl-tRNA synthetase (ProRS) domain {Thermus the 98.93
d1g5ha2290 The aaRS-like accessory subunit of mitochondrial p 98.41
d1atia2394 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 98.14
d1b8aa2335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 98.14
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 98.02
d1c0aa3346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 97.56
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 97.55
d1eova2353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 97.3
d1e1oa2342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 97.23
d1l0wa3356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 97.2
d1nnha_293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 97.14
d1n9wa2304 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 96.61
d1v95a_130 Nuclear receptor coactivator 5 (KIAA1637) {Human ( 95.98
d1jjcb5207 Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, 88.31
d1gkma_509 Histidine ammonia-lyase (HAL) {Pseudomonas putida 84.25
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gkma_ a.127.1.2 (A:) Histidine ammonia-lyase (HAL) {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure