Citrus Sinensis ID: 003058
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 852 | 2.2.26 [Sep-21-2011] | |||||||
| Q8BKN5 | 1024 | Gamma-tubulin complex com | yes | no | 0.230 | 0.191 | 0.291 | 2e-18 | |
| Q95K09 | 725 | Gamma-tubulin complex com | N/A | no | 0.230 | 0.270 | 0.287 | 1e-17 | |
| Q96RT8 | 1024 | Gamma-tubulin complex com | yes | no | 0.230 | 0.191 | 0.279 | 6e-17 | |
| Q96RT7 | 1819 | Gamma-tubulin complex com | no | no | 0.264 | 0.123 | 0.259 | 2e-12 | |
| Q9UGJ1 | 667 | Gamma-tubulin complex com | no | no | 0.238 | 0.304 | 0.239 | 9e-08 | |
| Q9D4F8 | 667 | Gamma-tubulin complex com | no | no | 0.237 | 0.302 | 0.243 | 2e-07 | |
| Q95ZG4 | 813 | Spindle pole body compone | yes | no | 0.226 | 0.237 | 0.235 | 5e-07 | |
| Q9BSJ2 | 902 | Gamma-tubulin complex com | no | no | 0.235 | 0.222 | 0.226 | 3e-06 | |
| Q921G8 | 905 | Gamma-tubulin complex com | no | no | 0.272 | 0.256 | 0.202 | 2e-05 | |
| Q5R5J6 | 902 | Gamma-tubulin complex com | no | no | 0.232 | 0.219 | 0.220 | 8e-05 |
| >sp|Q8BKN5|GCP5_MOUSE Gamma-tubulin complex component 5 OS=Mus musculus GN=Tubgcp5 PE=2 SV=2 | Back alignment and function desciption |
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Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 51/247 (20%)
Query: 631 VIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFN 690
+ ++ CL +I KQ H ++ L D+RL++ L +R +L+ GD + F T IF+
Sbjct: 685 LTLRSCLYPHIDKQYLHCCGNLMQTLKRDFRLVEYLQAMRNFFLMEGGDTMYDFYTSIFD 744
Query: 691 KLDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLAS 750
K+ + E W + LN LQE++ D+L + I S N+ +
Sbjct: 745 KIREKETWQNVSFLNVQLQEAVGQRY------PEDSLRLSI------------SFENVDT 786
Query: 751 TPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALD-- 808
T +K + LD L +YKV WP++++ ++E K YNQV LL++K AK++LD
Sbjct: 787 TKKK-----LPVHILDGLTLSYKVPWPVDIVISVECQKIYNQVFLLLLQIKWAKYSLDVL 841
Query: 809 -------KARRWMWK----------------GRSLATNSHSHKRHWLVEQKLLHFVDAFH 845
A R K SL H R +L+ KL+HFV++ H
Sbjct: 842 LFGELGNAAERSQAKEDIPRDQDTPSQFGPPKESLRQQIH---RMFLLRVKLMHFVNSLH 898
Query: 846 QYVMDRV 852
Y+M R+
Sbjct: 899 NYIMTRI 905
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Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome. Mus musculus (taxid: 10090) |
| >sp|Q95K09|GCP5_MACFA Gamma-tubulin complex component 5 (Fragment) OS=Macaca fascicularis GN=TUBGCP5 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q96RT8|GCP5_HUMAN Gamma-tubulin complex component 5 OS=Homo sapiens GN=TUBGCP5 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q96RT7|GCP6_HUMAN Gamma-tubulin complex component 6 OS=Homo sapiens GN=TUBGCP6 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q9UGJ1|GCP4_HUMAN Gamma-tubulin complex component 4 OS=Homo sapiens GN=TUBGCP4 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9D4F8|GCP4_MOUSE Gamma-tubulin complex component 4 OS=Mus musculus GN=Tubgcp4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q95ZG4|SPC98_DICDI Spindle pole body component 98 OS=Dictyostelium discoideum GN=spc98 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9BSJ2|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q921G8|GCP2_MOUSE Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q5R5J6|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 852 | ||||||
| 225458503 | 1023 | PREDICTED: uncharacterized protein LOC10 | 0.984 | 0.820 | 0.670 | 0.0 | |
| 356518080 | 1002 | PREDICTED: uncharacterized protein LOC10 | 0.978 | 0.832 | 0.610 | 0.0 | |
| 449447225 | 984 | PREDICTED: uncharacterized protein LOC10 | 0.953 | 0.825 | 0.606 | 0.0 | |
| 224124794 | 977 | tubulin gamma complex-associated protein | 0.944 | 0.823 | 0.605 | 0.0 | |
| 297850476 | 981 | tubulin family protein [Arabidopsis lyra | 0.929 | 0.807 | 0.567 | 0.0 | |
| 145337796 | 995 | Spc97 / Spc98 family of spindle pole bod | 0.948 | 0.812 | 0.579 | 0.0 | |
| 297842841 | 989 | EMB1427 [Arabidopsis lyrata subsp. lyrat | 0.946 | 0.814 | 0.567 | 0.0 | |
| 255580731 | 863 | transferase, transferring glycosyl group | 0.819 | 0.808 | 0.629 | 0.0 | |
| 22329693 | 976 | Spc97 / Spc98 family of spindle pole bod | 0.946 | 0.825 | 0.540 | 0.0 | |
| 8886955 | 1002 | F2D10.5 [Arabidopsis thaliana] | 0.946 | 0.804 | 0.540 | 0.0 |
| >gi|225458503|ref|XP_002282254.1| PREDICTED: uncharacterized protein LOC100247210 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1146 bits (2964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/861 (67%), Positives = 677/861 (78%), Gaps = 22/861 (2%)
Query: 6 AEMQVPDSLMDKIYGVFSVGIHFATPVSSSRTNEVDLVRGVLQMLQGLSSSLFYWDESVR 65
A SL+DKI S GIHFATP+SS RTNE+DLVRGVLQ+LQG SSSLFYWD + +
Sbjct: 17 ARTDASRSLIDKISSALSDGIHFATPISSLRTNEIDLVRGVLQILQGFSSSLFYWDHAGQ 76
Query: 66 SFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTRVETTGRISSPTLRAFSSAV 125
SF K+GIYVTHLSLKS+HV+LNQF+YAATCLKLVEI + +VE + R S PTL+AF+ ++
Sbjct: 77 SFQAKSGIYVTHLSLKSLHVILNQFMYAATCLKLVEILINKVEKSVRQSPPTLKAFACSI 136
Query: 126 SAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQ 185
S WLK R +ALKEE KI+ SN+G TPTLLGLAS LSSLCSG EYLLQ+V GAIPQ+ F+
Sbjct: 137 STWLKRLRDVALKEETKISNSNIGTTPTLLGLASGLSSLCSGAEYLLQVVHGAIPQIYFE 196
Query: 186 FNMPVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFE 245
N VPAA++A HILD+LYKKL+EVC +QGGEVE YQMLL +FVGSLLPYIEGLDSWL+E
Sbjct: 197 PNSSVPAAEMATHILDHLYKKLNEVCHMQGGEVEAYQMLLFVFVGSLLPYIEGLDSWLYE 256
Query: 246 GMLDDPYEEMFFYANRAISVDKAEFWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEK 305
G LDDP EMFFYAN+ IS+D+AEFWEKSY+LR LQ LD E S++ SS + TN+K
Sbjct: 257 GTLDDPCNEMFFYANKTISIDEAEFWEKSYLLRPLQ--SLDVELSAMIGTSSRLPSTNDK 314
Query: 306 RQNGLRESISLSSSVKG-------LQACPLFIKDIAKSIISAGKSLQLIRHV-------S 351
++ RESIS SSS+KG L+ CPLF++DIAK IISAGKSLQLIRHV S
Sbjct: 315 KEMAGRESISTSSSMKGKEQSSKDLKLCPLFVEDIAKPIISAGKSLQLIRHVPMMTSAPS 374
Query: 352 SKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTLSEIFCISLAGLIGHGDHIFRYFWQDD 411
+ + I G+ G+ S +HRGQSIAGLTLSEIFC+SL GLIGHGDHI +YFW +D
Sbjct: 375 GRKSVHEINGFGSSYDGNISSKIHRGQSIAGLTLSEIFCVSLVGLIGHGDHISKYFWLED 434
Query: 412 SCESEFIPSLPSYMNDQMTRNGNTETLAVLTHSEKTWFKFLLDTLLQKGVIDQKSGNKVA 471
C + S+M+ Q GN E+L L SEK WFKFL++TLLQKG ID S +K A
Sbjct: 435 PCNPKIFSLFESHMDKQNLEKGNGESLPNLACSEKIWFKFLVETLLQKGEIDFGSKHKNA 494
Query: 472 SNVPNMKEENMGKIIENNLFTQKTFCPENPVISVCDVSLNINKSSNIWNALNLSRNYYLP 531
++ ++KEE + + L + + CPENPVI++C + LN N+ + W+ LNLSRN+YLP
Sbjct: 495 NDFHDVKEETIAGGALDELLLRSS-CPENPVITMCKLFLNKNRDA--WSTLNLSRNFYLP 551
Query: 532 PLNDEVLRKAVLGAESGNISELKGTNYAFGFQFGESEHLRSQCDTKLLEVLFPFPTILPS 591
PLNDE LR+A+ G + G S KGT+YAF F+F ESE+LRS+ DTKLLE LFPFPT+LPS
Sbjct: 552 PLNDEGLREAIFGEKIGLGSSAKGTDYAFAFKFAESEYLRSKDDTKLLEELFPFPTLLPS 611
Query: 592 FRDELHISELLPFQKNSTLPSRVLSWIQSVEPRTTPLPVVIMQECLTVYIKKQVDHIGKL 651
F++ L +SELLPFQKNSTL SRVL+W+QSVE + PLPVVIMQECL VYIKKQVD+IG+
Sbjct: 612 FQENLQMSELLPFQKNSTLSSRVLTWLQSVELKVVPLPVVIMQECLIVYIKKQVDYIGRH 671
Query: 652 ILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQES 711
ILS LMNDWRLMDEL VLRAIYLLGSGDLLQHFLTV+FNKLDKGE+WDDDFELNT+LQES
Sbjct: 672 ILSKLMNDWRLMDELGVLRAIYLLGSGDLLQHFLTVLFNKLDKGESWDDDFELNTILQES 731
Query: 712 IRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLKFT 771
IRNSADG LL+APD+L V IT+ H N DEQ + A+L STPR+S SFGIDGLDLLKFT
Sbjct: 732 IRNSADGMLLTAPDSLVVSITKHHSLNGDEQHNTASLVSTPRRSR-ESFGIDGLDLLKFT 790
Query: 772 YKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWKGRSLATNSHSHKRHW 831
YKVSWPLELIAN EAIKKYNQVMGFLLKVKRAKF LDKARRWMWKGR AT + H HW
Sbjct: 791 YKVSWPLELIANTEAIKKYNQVMGFLLKVKRAKFVLDKARRWMWKGRGTATINRKH--HW 848
Query: 832 LVEQKLLHFVDAFHQYVMDRV 852
LVEQKLLHFVDAFHQYVMDRV
Sbjct: 849 LVEQKLLHFVDAFHQYVMDRV 869
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518080|ref|XP_003527712.1| PREDICTED: uncharacterized protein LOC100782299 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449447225|ref|XP_004141369.1| PREDICTED: uncharacterized protein LOC101221298 [Cucumis sativus] gi|449498744|ref|XP_004160621.1| PREDICTED: uncharacterized protein LOC101229679 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224124794|ref|XP_002329950.1| tubulin gamma complex-associated protein [Populus trichocarpa] gi|222871972|gb|EEF09103.1| tubulin gamma complex-associated protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297850476|ref|XP_002893119.1| tubulin family protein [Arabidopsis lyrata subsp. lyrata] gi|297338961|gb|EFH69378.1| tubulin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|145337796|ref|NP_565235.3| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi|110737741|dbj|BAF00809.1| hypothetical protein [Arabidopsis thaliana] gi|332198257|gb|AEE36378.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297842841|ref|XP_002889302.1| EMB1427 [Arabidopsis lyrata subsp. lyrata] gi|297335143|gb|EFH65561.1| EMB1427 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|255580731|ref|XP_002531187.1| transferase, transferring glycosyl groups, putative [Ricinus communis] gi|223529228|gb|EEF31202.1| transferase, transferring glycosyl groups, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|22329693|ref|NP_564117.2| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi|332191867|gb|AEE29988.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|8886955|gb|AAF80641.1|AC069251_34 F2D10.5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 852 | ||||||
| TAIR|locus:2016334 | 995 | emb1427 "embryo defective 1427 | 0.947 | 0.811 | 0.560 | 5.9e-231 | |
| TAIR|locus:2030417 | 976 | AT1G20570 [Arabidopsis thalian | 0.946 | 0.825 | 0.521 | 3.9e-211 | |
| ZFIN|ZDB-GENE-050522-344 | 1015 | tubgcp5 "tubulin, gamma comple | 0.354 | 0.297 | 0.224 | 2.2e-29 | |
| UNIPROTKB|F1NEV3 | 1027 | TUBGCP5 "Uncharacterized prote | 0.352 | 0.292 | 0.229 | 3.2e-21 | |
| UNIPROTKB|E9PB12 | 1024 | TUBGCP5 "Gamma-tubulin complex | 0.374 | 0.311 | 0.227 | 5.5e-18 | |
| UNIPROTKB|Q96RT8 | 1024 | TUBGCP5 "Gamma-tubulin complex | 0.374 | 0.311 | 0.227 | 5.5e-18 | |
| UNIPROTKB|F6QEL8 | 1024 | TUBGCP5 "Uncharacterized prote | 0.339 | 0.282 | 0.224 | 1.1e-17 | |
| RGD|1304689 | 1024 | Tubgcp5 "tubulin, gamma comple | 0.375 | 0.312 | 0.229 | 1.4e-17 | |
| MGI|MGI:2178836 | 1024 | Tubgcp5 "tubulin, gamma comple | 0.376 | 0.313 | 0.224 | 1.3e-16 | |
| UNIPROTKB|E2RNC8 | 1025 | TUBGCP5 "Uncharacterized prote | 0.340 | 0.282 | 0.222 | 2.6e-16 |
| TAIR|locus:2016334 emb1427 "embryo defective 1427" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2228 (789.4 bits), Expect = 5.9e-231, P = 5.9e-231
Identities = 472/842 (56%), Positives = 581/842 (69%)
Query: 24 VGIHFATPVSSSRTNEVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSV 83
V H + S E+DLVRG+LQ LQGLSS +WD++ ++F K+ I V+HLS S+
Sbjct: 21 VWTHSELALPSVSVTELDLVRGLLQALQGLSSPFLFWDQTGQTFRAKSHIRVSHLSHSSL 80
Query: 84 HVVLNQFIYAATCLKLVEISVTRVETTGRISSPTLRAFSSAVSAWLKMFRGIALKEEMKI 143
HV+L F+Y ATCLKLVE V + T+ R S PTL AFS +VSAWL+ R IALKEE+ I
Sbjct: 81 HVLLAGFLYPATCLKLVESIVAAINTSLR-SPPTLMAFSDSVSAWLERLRDIALKEEVMI 139
Query: 144 TESNVGNTPTXXXXXXXXXXXXXXXXXXXQIVDGAIPQVCFQFNMPVPAAQVAVHILDYL 203
S++ TPT Q+V GAIP F N + AA++AVH+LDYL
Sbjct: 140 DNSDITVTPTLLGLTSSLSSLCSGAEYLLQVVHGAIPHTFFDSNSTISAAEIAVHVLDYL 199
Query: 204 YKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAI 263
YKKLDEVCLVQGGEVE + MLL +F GSLLPYIEGLDSWLFEG LDDP EE+FF AN+++
Sbjct: 200 YKKLDEVCLVQGGEVEGFHMLLQMFAGSLLPYIEGLDSWLFEGTLDDPCEELFFTANQSV 259
Query: 264 SVDKAEFWEKSYVLRQLQCWKLDAXXXXXXXXXXHVRETNEKR-QNGLRESISLSSSVKG 322
SVD AEFWEKSY L ++ K +V NEK+ +G + SL+S
Sbjct: 260 SVDDAEFWEKSYQLMKVPNSK------------SNVTSLNEKKVMSGHDANSSLASDKDK 307
Query: 323 LQ----ACPLFIKDIAKSIISAGKSLQLIRHVSSKS--NDDRIECLGNFNYGSD-----W 371
Q CPLFIKDI KSI+SAGKSLQL++H+ S S N + + G YG
Sbjct: 308 EQNTRVLCPLFIKDICKSIVSAGKSLQLMQHIPSTSSENSGKTQFHGRNGYGKSSVGSLL 367
Query: 372 STVHRGQSIAGLTLSEIFCISLAGLIGHGDHIFRYFWQDDSCESEFIPSLPSYMNDQMTR 431
+ + S A L+LSE+FC++LAGLIGHGDH+ RY W+D++ E E P+L SY++ ++
Sbjct: 368 TKMSSCSSTADLSLSEVFCLTLAGLIGHGDHVSRYLWKDEADEWEISPTLASYISGELVN 427
Query: 432 NGNTETLAVLTHSEKTWFKFLLDTLLQKGVIDQKSGNKVASNVPNMKEENMGKIIENNLF 491
+ + + L VLT SE+ W+K L+ + +K ++ KS + A +K+ N G + L
Sbjct: 428 DMDNKDLPVLTCSERMWYKLLVGAVQEKRAMEAKSELQSACYATGVKDGNSGLTAQKAL- 486
Query: 492 TQKTFCPENPVISVCDVSLNINKSSNIWNALNLSRNYYLPPLNDEVLRKAVLGAESGNIS 551
Q FC EN V+SV + L N+ N WN LNLS+NY LP LNDE L AV ESG
Sbjct: 487 -QGLFCNENLVVSVSKMDLERNR--NAWNVLNLSQNYCLPSLNDESLLSAVF-EESGMAD 542
Query: 552 E-LKGTNYAFGFQFGESEHLRSQCDTKLLEVLFPFPTILPSFRDELHISELLPFQKNSTL 610
L GTNY FGFQFG SE++ SQ DT LLE LFPFPT+LPSF+ +LH+SE LPFQKNSTL
Sbjct: 543 AGLSGTNYKFGFQFGRSEYISSQDDTNLLETLFPFPTLLPSFQPKLHLSEFLPFQKNSTL 602
Query: 611 PSRVLSWIQSVEPRTTPLPVVIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLR 670
PSRVLSW+ EP T LPVVIMQEC T+YI++QVD+IGK+ILS LMNDW+LM ELAVLR
Sbjct: 603 PSRVLSWLLKAEPMDTRLPVVIMQECFTIYIRRQVDYIGKVILSKLMNDWKLMHELAVLR 662
Query: 671 AIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVL 730
AIYLLGSGDLLQHFLTVIF++L KGE+ +DDFELN +LQESIRNSAD LLS+PD+L V
Sbjct: 663 AIYLLGSGDLLQHFLTVIFDRLGKGESSNDDFELNIILQESIRNSADAMLLSSPDSLVVS 722
Query: 731 ITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKY 790
I+ + D++ + L+ST RKS +SFGID L+ LKFTYKV WPLELIAN EAIKKY
Sbjct: 723 ISRED-RDKDDKGDIIPLSST-RKSRVNSFGIDCLESLKFTYKVPWPLELIANSEAIKKY 780
Query: 791 NQVMGFLLKVKRAKFALDKARRWMWKGRSLATNSHSHKRHWLVEQKLLHFVDAFHQYVMD 850
NQVMGFLLKVKRAK+ LDKARRWMWKG+ AT H HWL+EQKLL+FVDAFHQYVMD
Sbjct: 781 NQVMGFLLKVKRAKYVLDKARRWMWKGKGSATKIRKH--HWLLEQKLLNFVDAFHQYVMD 838
Query: 851 RV 852
RV
Sbjct: 839 RV 840
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| TAIR|locus:2030417 AT1G20570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-050522-344 tubgcp5 "tubulin, gamma complex associated protein 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NEV3 TUBGCP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E9PB12 TUBGCP5 "Gamma-tubulin complex component 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q96RT8 TUBGCP5 "Gamma-tubulin complex component 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F6QEL8 TUBGCP5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| RGD|1304689 Tubgcp5 "tubulin, gamma complex associated protein 5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:2178836 Tubgcp5 "tubulin, gamma complex associated protein 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RNC8 TUBGCP5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00014750001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (1012 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 852 | |||
| pfam04130 | 528 | pfam04130, Spc97_Spc98, Spc97 / Spc98 family | 2e-36 | |
| pfam04130 | 528 | pfam04130, Spc97_Spc98, Spc97 / Spc98 family | 3e-28 |
| >gnl|CDD|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 2e-36
Identities = 70/224 (31%), Positives = 111/224 (49%), Gaps = 11/224 (4%)
Query: 632 IMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNK 691
+ L + I K +L L+ ++ L+ L L+ +LLG GD + FL +F++
Sbjct: 276 LDTSALELLIDSAYLEASKSLLDLLLEEYDLLGHLQALKDYFLLGRGDFISSFLESLFDE 335
Query: 692 LDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLAST 751
LDK N D L +LLQE++R+S S+ D + + + N
Sbjct: 336 LDKPANSLSDHALQSLLQEALRSS------SSDDDPASSDLDELETKKSDSSETLN--RL 387
Query: 752 PRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKAR 811
S S G+ GLD L YKV WPL LI EA+KKY ++ FLL++KRA++ L+K
Sbjct: 388 DVSSLELSSGLSGLDALTLDYKVPWPLSLILTPEALKKYQRIFRFLLRLKRAEYLLNKLW 447
Query: 812 RWMWKGRSLATNSHSHK---RHWLVEQKLLHFVDAFHQYVMDRV 852
+ + K R L + + + WL+ ++LHFV++ Y+ V
Sbjct: 448 KELNKRRRLGSTRRNEPLLRKIWLLRFQMLHFVNSLQYYIQVDV 491
|
The spindle pole body (SPB) functions as the microtubule-organising centre in yeast. Members of this family are spindle pole body (SBP) components such as Spc97 and Spc98 that form a complex with gamma-tubulin. This family of proteins includes the grip motif 1 and grip moti 2. Length = 528 |
| >gnl|CDD|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 852 | |||
| KOG2001 | 734 | consensus Gamma-tubulin complex, DGRIP84/SPC97 com | 100.0 | |
| PF04130 | 542 | Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR00 | 100.0 | |
| KOG2000 | 879 | consensus Gamma-tubulin complex, DGRIP91/SPC98 com | 100.0 | |
| KOG2065 | 679 | consensus Gamma-tubulin ring complex protein [Cyto | 100.0 | |
| KOG4344 | 1121 | consensus Uncharacterized conserved protein [Funct | 100.0 |
| >KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-70 Score=607.23 Aligned_cols=487 Identities=21% Similarity=0.343 Sum_probs=391.5
Q ss_pred ecccCccccCCC-CcccCCHHHHHHHHHHhhcCCCCCeEEEeCC-----------CccEEEecCceeecCCHHHHHHHHH
Q 003058 21 VFSVGIHFATPV-SSSRTNEVDLVRGVLQMLQGLSSSLFYWDES-----------VRSFCVKTGIYVTHLSLKSVHVVLN 88 (852)
Q Consensus 21 ~~~~~~~~~~~~-~~~~i~E~~LvrdlL~~L~Gi~g~~f~~~~~-----------~~~f~i~~~i~vs~ls~~sl~~Ll~ 88 (852)
+.+++.+...|. .+...||..+++|+|++|.|++|.|+.++.. ...|.|.|++. -+++.+++
T Consensus 75 ~~~~~~~~~~is~~~lp~QE~~li~dLl~af~Gv~~ryV~~Q~~~~s~~~~~~~~~~~F~v~~~fd------~~ir~la~ 148 (734)
T KOG2001|consen 75 VGIDYFTDYEISDMPLPSQESKLIDDLLYAFVGVEGRYVSPQYMIISEAYEKWIDSIFFMVLPRFD------LAIRELAE 148 (734)
T ss_pred cccccccccCcccCCchhHHHHHHHHHHHHHcCCCcceeecchhhhhhhhhhhccCcceeeccchh------HHHHHHHH
Confidence 444555544443 3555799999999999999999999987431 23455666554 79999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhhhH
Q 003058 89 QFIYAATCLKLVEISVTRVETTGRISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSGG 168 (852)
Q Consensus 89 ~~l~lG~~~~~Lr~Fve~~~~~~~~~g~v~qAf~~aL~~~L~~Y~~~l~~LE~~l~~~~~~~~~TLl~L~~~L~~~~~~l 168 (852)
+++++|.+|..+++|++.... ...|.|++|+|+|+++.|.+|+.+|+++|+++.. ...||..|...++|+...+
T Consensus 149 eilpl~~yy~~v~~fie~~s~--f~~G~vn~alaaAlr~ll~dyy~li~qlE~e~R~----~~lslq~L~~y~qP~m~~m 222 (734)
T KOG2001|consen 149 EILPLASYYLLVQDFIEETSF--FEYGQVNHALAAALRELLYDYYELISQLEQELRT----NRLSLQDLWFYMQPMMRSM 222 (734)
T ss_pred HHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccHHHHHHHHhhhHHHH
Confidence 999999999999999998643 4789999999999999999999999999999883 4689999999999987766
Q ss_pred HHHHHHHhccCCcccccCCCCCCcccchHHHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhHHHHHHHHHHHHhcccc
Q 003058 169 EYLLQIVDGAIPQVCFQFNMPVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGML 248 (852)
Q Consensus 169 ~~L~~l~~~~i~~~~~~~~~~~~~~~~G~~LLs~Ly~~~~~~~~~~~Gd~~~~~ll~~Ll~~~~~PYl~~L~~WI~~G~L 248 (852)
+.++..+... ..+.++||++|+.|++.+..+ .||+.++.++.++++.+++||++|+++||+.|.+
T Consensus 223 ~~l~~~~~~~-----------~~~~~~gg~vls~l~~~~~~~----~Gd~~a~~ll~~l~r~as~~Y~~mLe~Wi~~Gii 287 (734)
T KOG2001|consen 223 RRLAVAATTT-----------VKKVCKGGAVLSLLQSSIKEN----LGDRSARMLLKKLLRNASQPYCTMLEEWIYQGII 287 (734)
T ss_pred HHHHHHHhhh-----------hccccCchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcchHHHHHHHHHhcccc
Confidence 6555544321 123479999999999998763 6999999999999999999999999999999999
Q ss_pred cCCCCcceEEecCCCC------CCchhhcccceEEEeccccccccccccccccCccccchhhhhhcCccccccccccCCC
Q 003058 249 DDPYEEMFFYANRAIS------VDKAEFWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEKRQNGLRESISLSSSVKG 322 (852)
Q Consensus 249 ~Dp~~EFFI~~~~~v~------~~~~~~W~~~y~lr~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~~~~~~~ 322 (852)
+|||+||||..+ .+. ...++||..+|+||.+
T Consensus 288 ~Dpy~EFmi~d~-~~~k~~l~ed~~d~YW~~RY~ir~d------------------------------------------ 324 (734)
T KOG2001|consen 288 NDPYQEFMIYDN-LITKEDLPEDYTDKYWDQRYTIRKD------------------------------------------ 324 (734)
T ss_pred cCchHhHhhhhc-chhhhcCchhhhHHHHHHhheechh------------------------------------------
Confidence 999999999988 333 2367899999999984
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHhhcCCCCcchhhhccCCCCCCCCccccccccccccchhHHHHHHhhhccCCCcc
Q 003058 323 LQACPLFIKDIAKSIISAGKSLQLIRHVSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTLSEIFCISLAGLIGHGDH 402 (852)
Q Consensus 323 ~~~vP~FL~~~a~kIl~~GKsl~lLr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 402 (852)
.+|.|+.+.++|||.||||+|++|+||+... ++.
T Consensus 325 --qiP~fL~~~adkIL~tGKYLNVvReC~~~v~-----~p~--------------------------------------- 358 (734)
T KOG2001|consen 325 --QIPGFLLSEADKILRTGKYLNVVRECGKIVT-----IPQ--------------------------------------- 358 (734)
T ss_pred --hcchHHHHHHHHHHHhhhHHHHHHHhCccCC-----CCc---------------------------------------
Confidence 3999999999999999999999999996643 100
Q ss_pred cccccccCCCCCCcccCCCcccccchhccCCCcccccccccchhhHHHHHHhhhhhhcccccccCCcccCCCCccccccc
Q 003058 403 IFRYFWQDDSCESEFIPSLPSYMNDQMTRNGNTETLAVLTHSEKTWFKFLLDTLLQKGVIDQKSGNKVASNVPNMKEENM 482 (852)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 482 (852)
.+ | +-+|+
T Consensus 359 ---------------~~--------------n----------~~~~~--------------------------------- 366 (734)
T KOG2001|consen 359 ---------------SS--------------N----------EINDP--------------------------------- 366 (734)
T ss_pred ---------------ch--------------h----------hhccc---------------------------------
Confidence 00 0 00000
Q ss_pred chhhhcccccccccCCCCCcccccccccccccccchhhhhhhccccCCCCCChHHHHHHHhccccCCcccccCCCccccc
Q 003058 483 GKIIENNLFTQKTFCPENPVISVCDVSLNINKSSNIWNALNLSRNYYLPPLNDEVLRKAVLGAESGNISELKGTNYAFGF 562 (852)
Q Consensus 483 ~~~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (852)
.
T Consensus 367 -------------------~------------------------------------------------------------ 367 (734)
T KOG2001|consen 367 -------------------A------------------------------------------------------------ 367 (734)
T ss_pred -------------------c------------------------------------------------------------
Confidence 0
Q ss_pred cccccchhhcccccccccccCCCCccCCCcccccccccccccccCCCCccchhccccccCCCCCCCcHHHHhhhhhHHHH
Q 003058 563 QFGESEHLRSQCDTKLLEVLFPFPTILPSFRDELHISELLPFQKNSTLPSRVLSWIQSVEPRTTPLPVVIMQECLTVYIK 642 (852)
Q Consensus 563 ~~~~~~~~~~q~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~l~~~l~~~I~ 642 (852)
+ + +.+.....|+
T Consensus 368 -----------~------------------~---------------------------------------~e~~~~e~I~ 379 (734)
T KOG2001|consen 368 -----------D------------------L---------------------------------------MESNHEEYIK 379 (734)
T ss_pred -----------c------------------c---------------------------------------chhhHHHHHH
Confidence 0 0 0001224799
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhcccccccCC
Q 003058 643 KQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIRNSADGKLLS 722 (852)
Q Consensus 643 ~~y~~a~~~Ll~~L~~~~~L~~hL~aLr~yfLL~~GDf~~~F~~~l~~~L~k~~~~~~~~~L~~lL~~Al~~ss~~~~~~ 722 (852)
++|..||..++++|+++++|..||++||+||||.||||+.+||+.+.++|.|++..+.+.+|+++|+.|++..++.. .
T Consensus 380 ~ay~~A~~~lL~ll~~e~dL~~hLrslK~YfLldQgdF~~~Fld~~~eEL~K~v~~i~p~kLqsLL~laLr~~s~a~--~ 457 (734)
T KOG2001|consen 380 KAYEFANEILLKLLFEEYDLVGHLRSLKHYFLLDQGDFFVTFLDKAEEELTKNVENISPEKLQSLLDLALREQSEAA--N 457 (734)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhcchhhcCHHHHHHHHHHHHHhhhccc--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999433322 4
Q ss_pred CC--CceEEEEEecC---------CCCCCCCccccccCCCCCCCCCCCCCccccceEEEEEeecCccceeeCHHHHHHHH
Q 003058 723 AP--DALEVLITESH---------GSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYN 791 (852)
Q Consensus 723 d~--~~L~~~l~~~~---------~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~d~~~L~Y~V~WPLslIit~~~m~~Yq 791 (852)
|| +.|.|.+.+.. ++..++..+ +...+|+. -....|+++|+|+|+|+||||+||++++|.+||
T Consensus 458 Dp~k~~L~i~~~~~~L~~ql~~~l~ie~~e~~a--ns~~dP~~----~l~lsGlE~faf~Y~vkwPLSlIIsrkal~kYQ 531 (734)
T KOG2001|consen 458 DPMKEDLKICVDPTDLITQLSHILAIEPEEESA--NSQADPLE----HLDLSGLEAFAFDYEVKWPLSLIISRKALIKYQ 531 (734)
T ss_pred CchhhheeeeecHhhHHHHHHHHHhcCcccccc--ccccCcch----hccccchhhheeeeccCCceeeeEcHHHHHHHH
Confidence 55 78888775431 232222111 11112221 146789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhc--cCCccc-hhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003058 792 QVMGFLLKVKRAKFALDKARRWMWKG--RSLATN-SHSHKRHWLVEQKLLHFVDAFHQYVMDRV 852 (852)
Q Consensus 792 ~IFrfLl~lKr~e~~L~~~~~W~~~~--~~~~~~-~~~~~~~~~LR~~Ml~Fv~~L~~Yl~~eV 852 (852)
.|||+|+.|||+++.|+.+ |+.++ |.+... ..+.+.++.||+||++||++++||+|+||
T Consensus 532 mLfR~lf~lkhVerqL~~~--W~~~~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~~Y~~~eV 593 (734)
T KOG2001|consen 532 MLFRYLFYLKHVERQLCET--WQSHSKARSSNTKGAQIVRASFLLRQRMLNFIQSIEYYMTQEV 593 (734)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 98643 333322 35688899999999999999999999987
|
|
| >PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin | Back alignment and domain information |
|---|
| >KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4344 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 852 | ||||
| 3rip_A | 677 | Crystal Structure Of Human Gamma-Tubulin Complex Pr | 3e-08 |
| >pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4 (Gcp4) Length = 677 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Length = 677 | Back alignment and structure |
|---|
Score = 124 bits (311), Expect = 2e-29
Identities = 43/216 (19%), Positives = 86/216 (39%), Gaps = 5/216 (2%)
Query: 637 LTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGE 696
+ + + + + ++ + L+ +L +++ YLLG G+L Q F+ + L
Sbjct: 325 FEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPP 384
Query: 697 NWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSH 756
+ ++N Q+S LL + L +L + + + R++
Sbjct: 385 TAVTEHDVNVAFQQSAHKV----LLDDDNLLPLLHLTIEYHGKEHKDATQAREGPSRETS 440
Query: 757 PHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWK 816
P G L +YKV WPL ++ ++KYN V +LL V+R + L +
Sbjct: 441 PREAPASGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQ 500
Query: 817 GRSLATNSHSHKRHWLVEQKLLHFVDAFHQYVMDRV 852
+ L ++ + W + + VD Y+ V
Sbjct: 501 RKHL-KSNQTDAIKWRLRNHMAFLVDNLQYYLQVDV 535
|
| >3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Length = 677 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 852 | |||
| 3rip_A | 677 | Gamma-tubulin complex component 4; helix bundles, | 100.0 |
| >3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-66 Score=623.25 Aligned_cols=482 Identities=20% Similarity=0.321 Sum_probs=364.4
Q ss_pred HHHHHHHhhcCCCCCeEEEeCCCccEEEecCceeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc------CC---
Q 003058 42 LVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTRVETT------GR--- 112 (852)
Q Consensus 42 LvrdlL~~L~Gi~g~~f~~~~~~~~f~i~~~i~vs~ls~~sl~~Ll~~~l~lG~~~~~Lr~Fve~~~~~------~~--- 112 (852)
+|||+||+|+|++|.||.+++. ++|.+++++. .++ +++++++++++++|++|++|++|++..... ++
T Consensus 1 Ml~dlL~~L~G~~g~~i~~~~~-~~f~v~~~~~--~l~-~s~r~ll~~l~~lg~~y~~l~~fv~~~~~~~~~~~~~~~~~ 76 (677)
T 3rip_A 1 MIHELLLALSGYPGSIFTWNKR-SGLQVSQDFP--FLH-PSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQQQDHHPSQQ 76 (677)
T ss_dssp CHHHHHHHHTTCCCSSSEEETT-TEEECCSCCT--TSC-HHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-----------
T ss_pred ChHHHHHHHcCCCCCceEecCC-CceeeCCCCC--CCC-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccccccc
Confidence 5899999999999999998754 4799998753 334 689999999999999999999999974321 01
Q ss_pred ----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhhhHHHHHHHHhccCCcccccCCC
Q 003058 113 ----ISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQFNM 188 (852)
Q Consensus 113 ----~~g~v~qAf~~aL~~~L~~Y~~~l~~LE~~l~~~~~~~~~TLl~L~~~L~~~~~~l~~L~~l~~~~i~~~~~~~~~ 188 (852)
..|+++||||++|+++|.+|+..|+++|.++.. ...+||..|...++++...++.|..++.....
T Consensus 77 ~~~~~~g~v~~Al~~~i~~~L~~Y~~~i~~lE~~~l~---~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~-------- 145 (677)
T 3rip_A 77 GQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLG---DPHLSISHVNYFLDQFQLLFPSVMVVVEQIKS-------- 145 (677)
T ss_dssp --CCSCSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH---CTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHH--------
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 169999999999999999999999999999975 24689999999999999999999999864221
Q ss_pred CCCcccchHHHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCCCcceEEecCCCCC---
Q 003058 189 PVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISV--- 265 (852)
Q Consensus 189 ~~~~~~~G~~LLs~Ly~~~~~~~~~~~Gd~~~~~ll~~Ll~~~~~PYl~~L~~WI~~G~L~Dp~~EFFI~~~~~v~~--- 265 (852)
...+||++|+.||+.+ .+|||.+++++.+|+..|++||++||..||.+|+|.|||+||||++++....
T Consensus 146 ---~~~~G~~lL~~L~~~~------~~Gd~~~~~~~~~Ll~~~~~~~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~~~ 216 (677)
T 3rip_A 146 ---QKIHGCQILETVYKHS------CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSA 216 (677)
T ss_dssp ---HTCCTHHHHHHHHHHH------HSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSCSSEEEC--------
T ss_pred ---CCCCHHHHHHHHHHHH------hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCCcchheeEeccccccccc
Confidence 1269999999999876 3799999999999999999999999999999999999999999998764321
Q ss_pred -------------------------------CchhhcccceEEEeccccccccccccccccCccccchhhhhhcCccccc
Q 003058 266 -------------------------------DKAEFWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEKRQNGLRESI 314 (852)
Q Consensus 266 -------------------------------~~~~~W~~~y~lr~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~ 314 (852)
+...+|+.+|+++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~y~l~~----------------------------------- 261 (677)
T 3rip_A 217 QPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRV----------------------------------- 261 (677)
T ss_dssp ------------------------------------CCCCEEECG-----------------------------------
T ss_pred cccccccccccccccccccchhhhhhcccccccccchhcceeecH-----------------------------------
Confidence 01147999999987
Q ss_pred cccccCCCCCCCCcchH-HHHHHHHHHhHHHHHHHhhcCCCCcchhhhccCCCCCCCCccccccccccccchhHHHHHHh
Q 003058 315 SLSSSVKGLQACPLFIK-DIAKSIISAGKSLQLIRHVSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTLSEIFCISL 393 (852)
Q Consensus 315 ~~~~~~~~~~~vP~FL~-~~a~kIl~~GKsl~lLr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 393 (852)
.++|.|+. .+|+|||.||||+|+||++|.... +.. .+
T Consensus 262 ---------~~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~~-------~~~------------------~~-------- 299 (677)
T 3rip_A 262 ---------EILPSYIPVRVAEKILFVGESVQMFENQNVNLT-------RKG------------------SI-------- 299 (677)
T ss_dssp ---------GGSCTTSCHHHHHHHHHHHHHHHTCCC-CCSCC----------------------------CT--------
T ss_pred ---------hhCcCccCHHHHHHHHHhhHHHHHHHccCCCCC-------ccc------------------cc--------
Confidence 36999996 699999999999999999764421 000 00
Q ss_pred hhccCCCcccccccccCCCCCCcccCCCcccccchhccCCCcccccccccchhhHHHHHHhhhhhhcccccccCCcccCC
Q 003058 394 AGLIGHGDHIFRYFWQDDSCESEFIPSLPSYMNDQMTRNGNTETLAVLTHSEKTWFKFLLDTLLQKGVIDQKSGNKVASN 473 (852)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 473 (852)
+ +. .+.++.+.+
T Consensus 300 --------------~----------~~-----------------------~~~~~~~~l--------------------- 311 (677)
T 3rip_A 300 --------------L----------KN-----------------------QEDTFAAEL--------------------- 311 (677)
T ss_dssp --------------T----------CS-----------------------HHHHHHHHH---------------------
T ss_pred --------------c----------cc-----------------------hHHHHHHHH---------------------
Confidence 0 00 000000000
Q ss_pred CCcccccccchhhhcccccccccCCCCCcccccccccccccccchhhhhhhccccCCCCCChHHHHHHHhccccCCcccc
Q 003058 474 VPNMKEENMGKIIENNLFTQKTFCPENPVISVCDVSLNINKSSNIWNALNLSRNYYLPPLNDEVLRKAVLGAESGNISEL 553 (852)
Q Consensus 474 ~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (852)
..+
T Consensus 312 ------------------------------------------------------------------~~L----------- 314 (677)
T 3rip_A 312 ------------------------------------------------------------------HRL----------- 314 (677)
T ss_dssp ------------------------------------------------------------------HHH-----------
T ss_pred ------------------------------------------------------------------HHH-----------
Confidence 000
Q ss_pred cCCCccccccccccchhhcccccccccccCCCCccCCCcccccccccccccccCCCCccchhccccccCCCCCCCcHHHH
Q 003058 554 KGTNYAFGFQFGESEHLRSQCDTKLLEVLFPFPTILPSFRDELHISELLPFQKNSTLPSRVLSWIQSVEPRTTPLPVVIM 633 (852)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~l 633 (852)
.+++ +|+
T Consensus 315 -----------------------------~~~~----------------~~~---------------------------- 321 (677)
T 3rip_A 315 -----------------------------KQQP----------------LFS---------------------------- 321 (677)
T ss_dssp -----------------------------HTCS----------------SCC----------------------------
T ss_pred -----------------------------hccc----------------cCC----------------------------
Confidence 0000 000
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHh
Q 003058 634 QECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIR 713 (852)
Q Consensus 634 ~~~l~~~I~~~y~~a~~~Ll~~L~~~~~L~~hL~aLr~yfLL~~GDf~~~F~~~l~~~L~k~~~~~~~~~L~~lL~~Al~ 713 (852)
...+...|+++|..||+.|+++|+++++|.+||++||+||||++|||+.+|++.++++|++|+.+++.++|+.+|+.|++
T Consensus 322 ~~~~e~~I~~~~~~as~~Ll~lL~~~~~L~~hL~~Lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~~~~~~~L~~~L~~a~~ 401 (677)
T 3rip_A 322 LVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAH 401 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH
Confidence 00123478899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCC---CceEEEEEecCCCCCCCCccccccCCCCCCCCCCCCCccccceEEEEEeecCccceeeCHHHHHHH
Q 003058 714 NSADGKLLSAP---DALEVLITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKY 790 (852)
Q Consensus 714 ~ss~~~~~~d~---~~L~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~d~~~L~Y~V~WPLslIit~~~m~~Y 790 (852)
.+.. .|+ +++.+++.... ....+...... .. .........+..|||+|+|+|+|||||++|||+++|.+|
T Consensus 402 ~~~~----~~~~~~~~L~~~i~~~~-~~~~~~~~~~~-~~-~~~~~~~~~~~~~~d~l~L~Y~v~~PL~liit~~~l~~Y 474 (677)
T 3rip_A 402 KVLL----DDDNLLPLLHLTIEYHG-KEHKDATQARE-GP-SRETSPREAPASGWAALGLSYKVQWPLHILFTPAVLEKY 474 (677)
T ss_dssp HTTC----CCTTTGGGEEEEECCCC--------------------------CCTTTTEEEEECCCTTGGGTSCHHHHHHH
T ss_pred HccC----CchhhHhcceEEeeccc-ccccccccccc-cc-ccccccccCCccchheEEEEEeCCChHHHhCCHHHHHHH
Confidence 7642 222 67888775431 11110000000 00 000112234688999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhc--cCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003058 791 NQVMGFLLKVKRAKFALDKARRWMWKG--RSLATNSHSHKRHWLVEQKLLHFVDAFHQYVMDRV 852 (852)
Q Consensus 791 q~IFrfLl~lKr~e~~L~~~~~W~~~~--~~~~~~~~~~~~~~~LR~~Ml~Fv~~L~~Yl~~eV 852 (852)
++||+|||++||+++.|+++ |.... +.........++ +.+|++|+|||++|++|++++|
T Consensus 475 ~~iF~~Ll~lkr~~~~L~~~--w~~~~~~~~~~~~~~~~~~-~~lr~~m~~Fv~~l~~Y~~~~V 535 (677)
T 3rip_A 475 NVVFKYLLSVRRVQAELQHC--WALQMQRKHLKSNQTDAIK-WRLRNHMAFLVDNLQYYLQVDV 535 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHTSGGGCCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHhccccCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 86532 111111123344 8999999999999999999987
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00