Citrus Sinensis ID: 003111
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 846 | 2.2.26 [Sep-21-2011] | |||||||
| O22243 | 1015 | Zinc finger CCCH domain-c | yes | no | 0.986 | 0.822 | 0.626 | 0.0 | |
| Q1EHT7 | 1007 | Zinc finger CCCH domain-c | yes | no | 0.983 | 0.826 | 0.537 | 0.0 | |
| Q3MHU3 | 1384 | Putative ATP-dependent RN | yes | no | 0.381 | 0.233 | 0.294 | 4e-29 | |
| Q14BI7 | 1383 | Putative ATP-dependent RN | yes | no | 0.403 | 0.246 | 0.290 | 1e-28 | |
| Q6PGC1 | 1365 | ATP-dependent RNA helicas | no | no | 0.413 | 0.256 | 0.301 | 3e-27 | |
| Q8NDG6 | 1382 | Putative ATP-dependent RN | yes | no | 0.381 | 0.233 | 0.289 | 4e-27 | |
| Q7Z478 | 1369 | ATP-dependent RNA helicas | no | no | 0.416 | 0.257 | 0.293 | 7e-26 | |
| Q296Q5 | 1433 | Probable ATP-dependent RN | yes | no | 0.314 | 0.185 | 0.313 | 8e-25 | |
| B8A4F4 | 1342 | Putative ATP-dependent RN | yes | no | 0.393 | 0.248 | 0.277 | 1e-24 | |
| Q16JS8 | 1374 | Probable ATP-dependent RN | N/A | no | 0.390 | 0.240 | 0.267 | 3e-23 |
| >sp|O22243|C3H31_ARATH Zinc finger CCCH domain-containing protein 31 OS=Arabidopsis thaliana GN=At2g47680 PE=2 SV=2 | Back alignment and function desciption |
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Score = 1075 bits (2779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/852 (62%), Positives = 664/852 (77%), Gaps = 17/852 (1%)
Query: 1 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSE 60
MSATADIT+YRDYF++LGRGERVEV+AIPS +QRTIFQRRV YLEQV LLGV +S+
Sbjct: 175 MSATADITRYRDYFKELGRGERVEVVAIPSPDQRTIFQRRVLYLEQVAGLLGV----SSD 230
Query: 61 LSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWH 120
LS+ YC GPSPS A+ EIKPE+ LIHDL+L+IH+ E DIEKSILVFLPTYY+LEQQ+H
Sbjct: 231 LSA--YCPGPSPSSADTEIKPELQNLIHDLILYIHEKEPDIEKSILVFLPTYYSLEQQYH 288
Query: 121 LMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIPKVAYVIDSCR 180
++P + F+VHILH S+DTEQAL AMKIC+S RKVILATNIAESSVTIPKVAYVIDSCR
Sbjct: 289 QLEPFFASFEVHILHRSIDTEQALAAMKICRSRRKVILATNIAESSVTIPKVAYVIDSCR 348
Query: 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAI 240
SLQVFWD +RK D+ +LVWVS+SQAEQRRGRTGRTCDG+VYRLV +FF LE+HE P+I
Sbjct: 349 SLQVFWDPSRKRDAVQLVWVSRSQAEQRRGRTGRTCDGEVYRLVPSAFFNKLEEHEPPSI 408
Query: 241 LRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGR 300
L+LSLR QVL ICC ES+AI+D LL KA+DPP P+VV DAL +L +AL+K SPRGR
Sbjct: 409 LKLSLRQQVLHICCTESRAINDANALLAKAMDPPDPDVVDDALRMLLSIQALRK-SPRGR 467
Query: 301 YEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFA 360
YEPTFYGRLLASF LSFDAS+LV+KFGE+GMLR+GILLG+LMDT PLPI HPFGDD+LF
Sbjct: 468 YEPTFYGRLLASFPLSFDASILVVKFGEMGMLRQGILLGVLMDTLPLPIHHPFGDDSLFL 527
Query: 361 EYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKDKQRLDHLQQVLKFDETKVTA 420
EY YFGG + GR+EMV+M N CAFQFWQ VFKDK RL++L+Q+L ++ K
Sbjct: 528 EYVDHYFGGSKT--ISGGRREMVLMANFCAFQFWQRVFKDKHRLENLKQLLSKEKDKDLK 585
Query: 421 SLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLPTYYDPYEFEH 480
+ P+IE+EWC H + QSS +HVSELYED L++ HRFRP+F+ +S+ PTYY+PYEF+H
Sbjct: 586 LMFPEIEKEWCDFHNIAQSSFYHVSELYEDTLSSFHRFRPQFISSSDSQPTYYNPYEFDH 645
Query: 481 TCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVAVPFVAPNQFQSNNVAEKLASIIKEIRV 540
TC + C P D + D ++ P E +KCV+VPFV PN FQ+N +AE +ASIIKEIR
Sbjct: 646 TCYIECQPSEDKYLHSEDVDNNQPPPEVRKCVSVPFVPPNAFQANAIAENMASIIKEIRT 705
Query: 541 QYVEDVSGNQDKAVNGSE--TPGEAPLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYS 598
Q S N A+ + GEAP+CVYF+NG CNRG C F+H+LQ+ RPACKFF S
Sbjct: 706 QCTPSESDNGHGALEPEDYVEYGEAPVCVYFLNGYCNRGGQCTFTHTLQSTRPACKFFAS 765
Query: 599 LQGCRNGDSCIFSHDLGQPV---LPSSSFTCLPEDGVANAASLLRLFPTSSDGSILLLDD 655
QGCRNG+SC+FSH + + LP CLPE+ ++ + LL LFPTSS+G IL+ DD
Sbjct: 766 SQGCRNGESCLFSHAMRRRTTSYLPPPQ--CLPEEDGSSTSPLLDLFPTSSEGCILVFDD 823
Query: 656 TDMHFSANLACLYDPSRIISTTCLSDSAICDTSLAGIRILWGLCHSLKTVISEAG-DNPI 714
+DMHF++++A Y RI+ST+ S++ CD+SLA RI WGL H +T+IS+AG +NPI
Sbjct: 824 SDMHFTSSIANRYPSWRILSTSSSSETLFCDSSLADTRIFWGLNHPYQTIISKAGRENPI 883
Query: 715 PWKEVKCVLWYPSLESYSENLESQKTLMQNFFEHLAIRMLADALYDTRVIITMNNIKFAQ 774
PW EVKCVLW+ + +SY++ E QKT++QNFFEH+AIR+L D LY RV++TMNN++F+
Sbjct: 884 PWNEVKCVLWFLNPDSYADTPEKQKTILQNFFEHMAIRLLGDKLYKIRVVLTMNNVRFSL 943
Query: 775 LQVEKLARDSFFFLSESFPFDEMSFGELSDTVNTKRPMLVSRAISYVFDLHPPTDFQFGD 834
LQVEKLAR+SFFFL ESFP D SFG DT+ ++PMLVSR ISYVF+LHPP+D QFG+
Sbjct: 944 LQVEKLARESFFFLGESFPHDSESFGAFQDTLTIQKPMLVSRPISYVFNLHPPSDIQFGN 1003
Query: 835 YAAVLHRCLRDN 846
Y ++L + L +
Sbjct: 1004 YTSLLRKSLHNK 1015
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Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: - |
| >sp|Q1EHT7|C3H4_ORYSJ Zinc finger CCCH domain-containing protein 4 OS=Oryza sativa subsp. japonica GN=Os01g0256800 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q3MHU3|TDRD9_RAT Putative ATP-dependent RNA helicase TDRD9 OS=Rattus norvegicus GN=Tdrd9 PE=2 SV=3 | Back alignment and function description |
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| >sp|Q14BI7|TDRD9_MOUSE Putative ATP-dependent RNA helicase TDRD9 OS=Mus musculus GN=Tdrd9 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q6PGC1|DHX29_MOUSE ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8NDG6|TDRD9_HUMAN Putative ATP-dependent RNA helicase TDRD9 OS=Homo sapiens GN=TDRD9 PE=2 SV=3 | Back alignment and function description |
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| >sp|Q7Z478|DHX29_HUMAN ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q296Q5|SPNE_DROPS Probable ATP-dependent RNA helicase spindle-E OS=Drosophila pseudoobscura pseudoobscura GN=spn-E PE=3 SV=2 | Back alignment and function description |
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| >sp|B8A4F4|TDRD9_DANRE Putative ATP-dependent RNA helicase TDRD9 OS=Danio rerio GN=tdrd9 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q16JS8|SPNE_AEDAE Probable ATP-dependent RNA helicase spindle-E OS=Aedes aegypti GN=spn-E PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 846 | ||||||
| 255564168 | 1025 | ATP-dependent RNA helicase, putative [Ri | 0.989 | 0.816 | 0.679 | 0.0 | |
| 297743876 | 1007 | unnamed protein product [Vitis vinifera] | 0.979 | 0.823 | 0.690 | 0.0 | |
| 359479904 | 1014 | PREDICTED: zinc finger CCCH domain-conta | 0.979 | 0.817 | 0.682 | 0.0 | |
| 357442507 | 1035 | Zinc finger CCCH domain-containing prote | 0.988 | 0.807 | 0.641 | 0.0 | |
| 297828489 | 1015 | zinc finger helicase family protein [Ara | 0.985 | 0.821 | 0.626 | 0.0 | |
| 15227112 | 1015 | zinc finger CCCH domain-containing prote | 0.986 | 0.822 | 0.626 | 0.0 | |
| 449469086 | 998 | PREDICTED: LOW QUALITY PROTEIN: zinc fin | 0.964 | 0.817 | 0.610 | 0.0 | |
| 122225040 | 1007 | RecName: Full=Zinc finger CCCH domain-co | 0.983 | 0.826 | 0.537 | 0.0 | |
| 222618132 | 1019 | hypothetical protein OsJ_01156 [Oryza sa | 0.983 | 0.816 | 0.537 | 0.0 | |
| 357127870 | 1004 | PREDICTED: zinc finger CCCH domain-conta | 0.977 | 0.823 | 0.530 | 0.0 |
| >gi|255564168|ref|XP_002523081.1| ATP-dependent RNA helicase, putative [Ricinus communis] gi|223537643|gb|EEF39266.1| ATP-dependent RNA helicase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1210 bits (3130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/855 (67%), Positives = 688/855 (80%), Gaps = 18/855 (2%)
Query: 1 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSE 60
MSATAD +YRDYF+DLGRGERVEVLAIPS+NQ+ +FQRRVSYLEQ S+
Sbjct: 176 MSATADFGRYRDYFKDLGRGERVEVLAIPSSNQQALFQRRVSYLEQEI--------TCSQ 227
Query: 61 LSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWH 120
+ + +YCSGPSP+M +A+IKPEVHKLIHDLV+HIH NE DIEK ILVFLPTY+ L QQW+
Sbjct: 228 VLATKYCSGPSPAMVSADIKPEVHKLIHDLVMHIHDNEPDIEKGILVFLPTYHDLLQQWY 287
Query: 121 LMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIPKVAYVIDSCR 180
L+KPL S FKVHILH S+DTEQAL+AMKI KSHRKVILATNIAESSVTIPKVAYVIDSCR
Sbjct: 288 LLKPLGSCFKVHILHGSIDTEQALLAMKIWKSHRKVILATNIAESSVTIPKVAYVIDSCR 347
Query: 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAI 240
SLQVFWD RK D AELVWVS+SQA+QR+GRTGRTCDGQ+YRLVT+SFF L+++E PAI
Sbjct: 348 SLQVFWDGTRKKDYAELVWVSKSQADQRKGRTGRTCDGQIYRLVTRSFFNKLQEYESPAI 407
Query: 241 LRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGR 300
LRLSLR QVL++CCAESKAI+DP+VLLQK LDPP P V+ DAL+LL H +AL + S RGR
Sbjct: 408 LRLSLRQQVLMVCCAESKAINDPRVLLQKTLDPPDPRVIEDALNLLVHIKALDRTSARGR 467
Query: 301 YEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFA 360
YEPTFYGRLLASF LSFDAS +VLKFG++G+LREGIL+GILMD QP PILHPFG++ LFA
Sbjct: 468 YEPTFYGRLLASFPLSFDASFIVLKFGDVGLLREGILIGILMDIQPQPILHPFGEEHLFA 527
Query: 361 EYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKDKQRLDHLQQVLKFDETKVTA 420
EY Y+GGD N + GRKEM++MGNLCA++FWQ VFKD+ RL+HL+++ FDE K
Sbjct: 528 EYAYHYYGGDCNNMVRIGRKEMILMGNLCAYKFWQRVFKDRHRLEHLKRLSTFDEMKAVT 587
Query: 421 SLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLPTYYDPYEFEH 480
SLLPKIEEEWCS H LV SSLH VSE+YEDIL+++HRFRP+FLG +GLPTYYDPYEF H
Sbjct: 588 SLLPKIEEEWCSFHNLVWSSLHQVSEIYEDILSSLHRFRPRFLGKCDGLPTYYDPYEFGH 647
Query: 481 TCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVAVPFVAPNQFQSNNVAEKLASIIKEIR- 539
CLL D+ +AAD+EH PS E KKC AVPFV FQ+ NVAEKL +I+KE+
Sbjct: 648 VCLLKSQQNEDIVVVAADDEHQEPSSEIKKCCAVPFVDSGHFQTINVAEKLLTIVKEVNK 707
Query: 540 ------VQYVE-DVSGNQDKAVNG--SETPGEAPLCVYFINGSCNRGTGCPFSHSLQAKR 590
YV D SGN VN S EAPLCVYF+NGSCN+G+ C FSHSLQAK+
Sbjct: 708 LCTGNDSSYVNGDPSGNDAGYVNEDVSHVNEEAPLCVYFVNGSCNKGSQCSFSHSLQAKK 767
Query: 591 PACKFFYSLQGCRNGDSCIFSHDLGQPVLPSSSFTCLPEDGVANAASLLRLFPTSSDGSI 650
PAC++F++LQGCRNG+SC FSHD+G V S C PED NA SLL+LFPTSSDG I
Sbjct: 768 PACRYFFTLQGCRNGESCSFSHDIGSSVSSCSPAPCPPEDDDVNAVSLLQLFPTSSDGCI 827
Query: 651 LLLDDTDMHFSANLACLYDPSRIISTTCLSDSAICDTSLAGIRILWGLCHSLKTVISEAG 710
LLL+D+D+HFS N AC YDPS+IISTTC+S++++ D SL G+RILW +T+IS+AG
Sbjct: 828 LLLEDSDLHFSLNFACFYDPSKIISTTCMSETSLNDPSLNGVRILWEFRDPCRTIISKAG 887
Query: 711 DNPIPWKEVKCVLWYPSLESYSENLESQKTLMQNFFEHLAIRMLADALYDTRVIITMNNI 770
N IPW EVKC+LW+PS S SENLE QK L+QNFF++LA R++AD+LY+ R+IITMNN+
Sbjct: 888 RNLIPWSEVKCILWFPSFASQSENLEGQKILVQNFFDYLASRIIADSLYELRIIITMNNV 947
Query: 771 KFAQLQVEKLARDSFFFLSESFPFDEMSFGELSDTVNTKRPMLVSRAISYVFDLHPPTDF 830
+FAQLQVEKL R+SFFFL ESFPFDE SFGEL+D V T++PM S+AISYVFDL PPTD
Sbjct: 948 RFAQLQVEKLGRESFFFLGESFPFDEASFGELADGVRTRKPMPASKAISYVFDLQPPTDI 1007
Query: 831 QFGDYAAVLHRCLRD 845
QF DYAA LH+CL D
Sbjct: 1008 QFDDYAATLHKCLHD 1022
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743876|emb|CBI36846.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359479904|ref|XP_002267435.2| PREDICTED: zinc finger CCCH domain-containing protein 31 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|357442507|ref|XP_003591531.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|355480579|gb|AES61782.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297828489|ref|XP_002882127.1| zinc finger helicase family protein [Arabidopsis lyrata subsp. lyrata] gi|297327966|gb|EFH58386.1| zinc finger helicase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|15227112|ref|NP_182290.1| zinc finger CCCH domain-containing protein 31 [Arabidopsis thaliana] gi|75317978|sp|O22243.2|C3H31_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 31; Short=AtC3H31 gi|3738282|gb|AAC63624.1| putative ATP-dependent RNA helicase A [Arabidopsis thaliana] gi|225898609|dbj|BAH30435.1| hypothetical protein [Arabidopsis thaliana] gi|330255781|gb|AEC10875.1| zinc finger CCCH domain-containing protein 31 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449469086|ref|XP_004152252.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 31-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|122225040|sp|Q1EHT7.1|C3H4_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 4; Short=OsC3H4 gi|108792647|dbj|BAE95808.1| ATP-dependent RNA helicase A -like [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|222618132|gb|EEE54264.1| hypothetical protein OsJ_01156 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|357127870|ref|XP_003565600.1| PREDICTED: zinc finger CCCH domain-containing protein 4-like [Brachypodium distachyon] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 846 | ||||||
| TAIR|locus:2043413 | 1015 | AT2G47680 [Arabidopsis thalian | 0.985 | 0.821 | 0.602 | 8.6e-278 | |
| RGD|2318361 | 1366 | Dhx29 "DEAH (Asp-Glu-Ala-His) | 0.297 | 0.184 | 0.306 | 9.1e-20 | |
| RGD|1306942 | 1384 | Tdrd9 "tudor domain containing | 0.238 | 0.145 | 0.333 | 1.8e-19 | |
| UNIPROTKB|H0YJJ2 | 918 | TDRD9 "Putative ATP-dependent | 0.238 | 0.220 | 0.347 | 1.8e-19 | |
| UNIPROTKB|E2RNZ8 | 1115 | TDRD9 "Uncharacterized protein | 0.238 | 0.181 | 0.338 | 2.3e-19 | |
| UNIPROTKB|J9P8U1 | 1120 | TDRD9 "Uncharacterized protein | 0.238 | 0.180 | 0.338 | 2.3e-19 | |
| UNIPROTKB|E1B9N7 | 1367 | DHX29 "Uncharacterized protein | 0.297 | 0.184 | 0.299 | 3.1e-19 | |
| MGI|MGI:1921941 | 1383 | Tdrd9 "tudor domain containing | 0.238 | 0.146 | 0.333 | 3.3e-19 | |
| UNIPROTKB|F1S9V4 | 1333 | TDRD9 "Uncharacterized protein | 0.238 | 0.151 | 0.355 | 3.3e-19 | |
| MGI|MGI:2145374 | 1365 | Dhx29 "DEAH (Asp-Glu-Ala-His) | 0.297 | 0.184 | 0.310 | 5.2e-19 |
| TAIR|locus:2043413 AT2G47680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2670 (944.9 bits), Expect = 8.6e-278, P = 8.6e-278
Identities = 513/851 (60%), Positives = 641/851 (75%)
Query: 1 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSE 60
MSATADIT+YRDYF++LGRGERVEV+AIPS +QRTIFQRRV YLEQV LLGV +S+
Sbjct: 175 MSATADITRYRDYFKELGRGERVEVVAIPSPDQRTIFQRRVLYLEQVAGLLGV----SSD 230
Query: 61 LSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWH 120
LS+ YC GPSPS A+ EIKPE+ LIHDL+L+IH+ E DIEKSILVFLPTYY+LEQQ+H
Sbjct: 231 LSA--YCPGPSPSSADTEIKPELQNLIHDLILYIHEKEPDIEKSILVFLPTYYSLEQQYH 288
Query: 121 LMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIPKVAYVIDSCR 180
++P + F+VHILH S+DTEQAL AMKIC+S RKVILATNIAESSVTIPKVAYVIDSCR
Sbjct: 289 QLEPFFASFEVHILHRSIDTEQALAAMKICRSRRKVILATNIAESSVTIPKVAYVIDSCR 348
Query: 181 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAI 240
SLQVFWD +RK D+ +LVWVS+SQAEQRRGRTGRTCDG+VYRLV +FF LE+HE P+I
Sbjct: 349 SLQVFWDPSRKRDAVQLVWVSRSQAEQRRGRTGRTCDGEVYRLVPSAFFNKLEEHEPPSI 408
Query: 241 XXXXXXXXXXXICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGR 300
ICC ES+AI+D LL KA+DPP P+VV DAL +L +AL+K SPRGR
Sbjct: 409 LKLSLRQQVLHICCTESRAINDANALLAKAMDPPDPDVVDDALRMLLSIQALRK-SPRGR 467
Query: 301 YEPTFYGRXXXXXXXXXXXXXXXXKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFA 360
YEPTFYGR KFGE+GMLR+GILLG+LMDT PLPI HPFGDD+LF
Sbjct: 468 YEPTFYGRLLASFPLSFDASILVVKFGEMGMLRQGILLGVLMDTLPLPIHHPFGDDSLFL 527
Query: 361 EYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKDKQRLDHLQQVLKFDETKVTA 420
EY YFGG + + GR+EMV+M N CAFQFWQ VFKDK RL++L+Q+L ++ K
Sbjct: 528 EYVDHYFGG--SKTISGGRREMVLMANFCAFQFWQRVFKDKHRLENLKQLLSKEKDKDLK 585
Query: 421 SLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLPTYYDPYEFEH 480
+ P+IE+EWC H + QSS +HVSELYED L++ HRFRP+F+ +S+ PTYY+PYEF+H
Sbjct: 586 LMFPEIEKEWCDFHNIAQSSFYHVSELYEDTLSSFHRFRPQFISSSDSQPTYYNPYEFDH 645
Query: 481 TCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVAVPFVAPNQFQSNNVAEKLASIIKEIRV 540
TC + C P D + D ++ P E +KCV+VPFV PN FQ+N +AE +ASIIKEIR
Sbjct: 646 TCYIECQPSEDKYLHSEDVDNNQPPPEVRKCVSVPFVPPNAFQANAIAENMASIIKEIRT 705
Query: 541 QYVEDVSGNQDKAVNGSETP--GEAPLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYS 598
Q S N A+ + GEAP+CVYF+NG CNRG C F+H+LQ+ RPACKFF S
Sbjct: 706 QCTPSESDNGHGALEPEDYVEYGEAPVCVYFLNGYCNRGGQCTFTHTLQSTRPACKFFAS 765
Query: 599 LQGCRNGDSCIFSHDLGQPV---LPSSSFTCLPEDGVANAASLLRLFPTSSDGSILLLDD 655
QGCRNG+SC+FSH + + LP CLPE+ ++ + LL LFPTSS+G IL+ DD
Sbjct: 766 SQGCRNGESCLFSHAMRRRTTSYLPPPQ--CLPEEDGSSTSPLLDLFPTSSEGCILVFDD 823
Query: 656 TDMHFSANLACLYDPSRIISTTCLSDSAICDTSLAGIRILWGLCHSLKTVISEAG-DNPI 714
+DMHF++++A Y RI+ST+ S++ CD+SLA RI WGL H +T+IS+AG +NPI
Sbjct: 824 SDMHFTSSIANRYPSWRILSTSSSSETLFCDSSLADTRIFWGLNHPYQTIISKAGRENPI 883
Query: 715 PWKEVKCVLWYPSLESYSENLESQKTLMQNFFEHLAIRMLADALYDTRVIITMNNIKFAQ 774
PW EVKCVLW+ + +SY++ E QKT++QNFFEH+AIR+L D LY RV++TMNN++F+
Sbjct: 884 PWNEVKCVLWFLNPDSYADTPEKQKTILQNFFEHMAIRLLGDKLYKIRVVLTMNNVRFSL 943
Query: 775 LQVEKLARDSFFFLSESFPFDEMSFGELSDTVNTKRPMLVSRAISYVFDLHPPTDFQFGD 834
LQVEKLAR+SFFFL ESFP D SFG DT+ ++PMLVSR ISYVF+LHPP+D QFG+
Sbjct: 944 LQVEKLARESFFFLGESFPHDSESFGAFQDTLTIQKPMLVSRPISYVFNLHPPSDIQFGN 1003
Query: 835 YAAVLHRCLRD 845
Y ++L + L +
Sbjct: 1004 YTSLLRKSLHN 1014
|
|
| RGD|2318361 Dhx29 "DEAH (Asp-Glu-Ala-His) box polypeptide 29" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| RGD|1306942 Tdrd9 "tudor domain containing 9" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|H0YJJ2 TDRD9 "Putative ATP-dependent RNA helicase TDRD9" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RNZ8 TDRD9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9P8U1 TDRD9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1B9N7 DHX29 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1921941 Tdrd9 "tudor domain containing 9" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1S9V4 TDRD9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2145374 Dhx29 "DEAH (Asp-Glu-Ala-His) box polypeptide 29" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O22243 | C3H31_ARATH | 3, ., 6, ., 4, ., - | 0.6267 | 0.9869 | 0.8226 | yes | no |
| Q1EHT7 | C3H4_ORYSJ | 3, ., 6, ., 4, ., - | 0.5375 | 0.9834 | 0.8262 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
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 |
 |
 |
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 |
 |
 | GSVIVG00027989001 | SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (996 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 846 | |||
| COG1643 | 845 | COG1643, HrpA, HrpA-like helicases [DNA replicatio | 3e-29 | |
| TIGR01970 | 819 | TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H | 6e-19 | |
| TIGR01967 | 1283 | TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H | 7e-14 | |
| PRK11131 | 1294 | PRK11131, PRK11131, ATP-dependent RNA helicase Hrp | 7e-12 | |
| PRK11664 | 812 | PRK11664, PRK11664, ATP-dependent RNA helicase Hrp | 9e-12 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 2e-09 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 4e-08 | |
| PHA02653 | 675 | PHA02653, PHA02653, RNA helicase NPH-II; Provision | 6e-08 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 7e-07 | |
| COG5084 | 285 | COG5084, YTH1, Cleavage and polyadenylation specif | 3e-04 | |
| smart00356 | 27 | smart00356, ZnF_C3H1, zinc finger | 3e-04 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 5e-04 |
| >gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 3e-29
Identities = 78/260 (30%), Positives = 117/260 (45%), Gaps = 32/260 (12%)
Query: 91 VLHIHKNESDIEKSILVFLP-------TYYALEQQWHLMKPLSSFFKVHILHSSVDT-EQ 142
+ IH E SILVFLP T LE+ L ++ L+ ++ EQ
Sbjct: 250 AVDIHLREG--SGSILVFLPGQREIERTAEWLEK-----AELGDDLEILPLYGALSAEEQ 302
Query: 143 ALMAMKICKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQ 202
+ RKV+LATNIAE+S+TIP + YVIDS + + +D + E +S+
Sbjct: 303 VRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISK 362
Query: 203 SQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLSLRLQVLLICCAESKAIS- 261
+ A+QR GR GRT G YRL ++ F + P ILR L ++L + K++
Sbjct: 363 ASADQRAGRAGRTGPGICYRLYSEEDFLAFPEFTLPEILRTDLS-GLVL----QLKSLGI 417
Query: 262 DPKVLLQKALDPPYPEVVGDALDLLDHKRALQ---KISPRGRYEPTFYGRLLASFSLSFD 318
+ LDPP + AL LL AL K++P G+ ++ L
Sbjct: 418 GQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSGKLTPLGKQ--------MSLLPLDPR 469
Query: 319 ASVLVLKFGEIGMLREGILL 338
+ ++L E G L E +
Sbjct: 470 LARMLLTAPEGGCLGEAATI 489
|
Length = 845 |
| >gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
| >gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >gnl|CDD|227416 COG5084, YTH1, Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 846 | |||
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 100.0 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 100.0 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 100.0 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 100.0 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 100.0 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 100.0 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 100.0 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 100.0 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 100.0 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 100.0 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 100.0 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.77 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.63 | |
| PF04408 | 102 | HA2: Helicase associated domain (HA2); InterPro: I | 99.52 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.5 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 99.42 | |
| smart00847 | 92 | HA2 Helicase associated domain (HA2) Add an annota | 99.4 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 99.29 | |
| PTZ00110 | 545 | helicase; Provisional | 99.22 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 99.21 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 99.21 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.19 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.19 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.16 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.16 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.16 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.15 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.15 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.12 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 99.12 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.11 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.07 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.06 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.05 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.05 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.03 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.02 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 98.99 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 98.97 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 98.97 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 98.97 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 98.94 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 98.94 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 98.93 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 98.91 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 98.9 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 98.88 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 98.88 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 98.85 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 98.85 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 98.84 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 98.77 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 98.76 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 98.75 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 98.71 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 98.69 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 98.66 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 98.66 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 98.65 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 98.65 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 98.61 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 98.59 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 98.59 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 98.59 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 98.57 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 98.52 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 98.51 | |
| KOG1763 | 343 | consensus Uncharacterized conserved protein, conta | 98.5 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 98.49 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 98.48 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 98.48 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 98.47 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 98.44 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 98.43 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 98.41 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 98.35 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 98.34 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 98.34 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 98.32 | |
| KOG1040 | 325 | consensus Polyadenylation factor I complex, subuni | 98.32 | |
| KOG1677 | 332 | consensus CCCH-type Zn-finger protein [General fun | 98.32 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 98.31 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 98.3 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 98.29 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 98.26 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 98.25 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 98.23 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 98.21 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 98.19 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 98.11 | |
| COG5252 | 299 | Uncharacterized conserved protein, contains CCCH-t | 98.08 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 97.98 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 97.94 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 97.94 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 97.92 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 97.91 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 97.88 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 97.84 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 97.8 | |
| PF00642 | 27 | zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si | 97.79 | |
| KOG1492 | 377 | consensus C3H1-type Zn-finger protein [General fun | 97.78 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 97.73 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 97.66 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 97.63 | |
| smart00356 | 27 | ZnF_C3H1 zinc finger. | 97.62 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 97.61 | |
| PF00642 | 27 | zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si | 97.6 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 97.57 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 97.48 | |
| COG5063 | 351 | CTH1 CCCH-type Zn-finger protein [General function | 97.47 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 97.43 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 97.41 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 97.36 | |
| COG5084 | 285 | YTH1 Cleavage and polyadenylation specificity fact | 97.35 | |
| KOG1492 | 377 | consensus C3H1-type Zn-finger protein [General fun | 97.34 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 97.32 | |
| KOG2494 | 331 | consensus C3H1-type Zn-finger protein [Transcripti | 97.23 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 97.11 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 97.01 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 96.97 | |
| KOG1040 | 325 | consensus Polyadenylation factor I complex, subuni | 96.97 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 96.93 | |
| smart00356 | 27 | ZnF_C3H1 zinc finger. | 96.92 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 96.9 | |
| KOG1595 | 528 | consensus CCCH-type Zn-finger protein [General fun | 96.89 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 96.86 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 96.67 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 96.46 | |
| COG5063 | 351 | CTH1 CCCH-type Zn-finger protein [General function | 96.4 | |
| KOG4791 | 667 | consensus Uncharacterized conserved protein [Funct | 96.31 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 96.16 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 96.15 | |
| KOG2185 | 486 | consensus Predicted RNA-processing protein, contai | 96.15 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 96.0 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 95.95 | |
| PF14608 | 19 | zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type | 95.82 | |
| KOG2333 | 614 | consensus Uncharacterized conserved protein [Gener | 95.79 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 95.76 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 95.58 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 95.57 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 95.51 | |
| KOG1677 | 332 | consensus CCCH-type Zn-finger protein [General fun | 95.27 | |
| KOG1595 | 528 | consensus CCCH-type Zn-finger protein [General fun | 95.25 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 95.16 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 95.09 | |
| KOG2185 | 486 | consensus Predicted RNA-processing protein, contai | 94.97 | |
| PF14608 | 19 | zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type | 94.95 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 94.88 | |
| COG5084 | 285 | YTH1 Cleavage and polyadenylation specificity fact | 94.86 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 94.54 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 94.11 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 93.99 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 93.31 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 91.58 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 91.48 | |
| KOG1039 | 344 | consensus Predicted E3 ubiquitin ligase [Posttrans | 91.41 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 90.91 | |
| KOG2494 | 331 | consensus C3H1-type Zn-finger protein [Transcripti | 89.73 | |
| COG5152 | 259 | Uncharacterized conserved protein, contains RING a | 89.27 | |
| COG5152 | 259 | Uncharacterized conserved protein, contains RING a | 88.99 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 87.78 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 87.57 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 87.36 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 86.83 | |
| KOG1039 | 344 | consensus Predicted E3 ubiquitin ligase [Posttrans | 85.79 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 85.34 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 85.14 | |
| KOG1763 | 343 | consensus Uncharacterized conserved protein, conta | 84.98 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 84.42 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 84.4 | |
| PF10650 | 23 | zf-C3H1: Putative zinc-finger domain; InterPro: IP | 83.87 |
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-89 Score=743.56 Aligned_cols=437 Identities=24% Similarity=0.336 Sum_probs=382.2
Q ss_pred CCCCcChHHHHHHhccCCCCccceEEEecCCCcCccccceechhHHHHHHhcCCCCCCcccccccccCCCCCCccccccC
Q 003111 1 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 80 (846)
Q Consensus 1 MSAT~d~~~f~~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~YLedv~~~l~~~~~~~~e~~~~~y~~~~~~~~~~~~i~ 80 (846)
||||+|+++|++||++ +|++.||| +|||+++|..++ .
T Consensus 197 mSatl~a~Kfq~yf~n------~Pll~vpg-----~~PvEi~Yt~e~-----------------------e--------- 233 (699)
T KOG0925|consen 197 MSATLDAEKFQRYFGN------APLLAVPG-----THPVEIFYTPEP-----------------------E--------- 233 (699)
T ss_pred eecccchHHHHHHhCC------CCeeecCC-----CCceEEEecCCC-----------------------C---------
Confidence 8999999999999986 89999997 799999987632 1
Q ss_pred hhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhc-------CCCCCcEEEEecCCccHHHHHHHhhc-c--
Q 003111 81 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMK-------PLSSFFKVHILHSSVDTEQALMAMKI-C-- 150 (846)
Q Consensus 81 ~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~-------~~~~~~~v~~Lhs~l~~~~~~~~~~~-~-- 150 (846)
++.++.++.+|.+||..++ +|||||||+|.+||+.+++.+. ...+.++|+||| |.+ |+.++++ +
T Consensus 234 rDylEaairtV~qih~~ee--~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy---P~~-qq~iFep~p~~ 307 (699)
T KOG0925|consen 234 RDYLEAAIRTVLQIHMCEE--PGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY---PAQ-QQRIFEPAPEK 307 (699)
T ss_pred hhHHHHHHHHHHHHHhccC--CCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC---chh-hccccCCCCcc
Confidence 2345667799999999987 6899999999999999998774 335679999999 444 4444443 2
Q ss_pred ---CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeeccc
Q 003111 151 ---KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKS 227 (846)
Q Consensus 151 ---~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt~~ 227 (846)
...|||||+|||||+|+||++|+||||+|+.|+++|||+.+++++.+.||||++|+||+|||||++||+||||||++
T Consensus 308 ~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~ 387 (699)
T KOG0925|consen 308 RNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEE 387 (699)
T ss_pred cCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHH
Confidence 12599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-cccccccchhhhhhhHHHHHHHhhhhcccCCChhhhhccccCCCChhhHHHHHHHHHhcCCcccCCCCCCcccccc
Q 003111 228 FFG-TLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFY 306 (846)
Q Consensus 228 ~~~-~l~~~~~PEI~r~~L~~~vL~lk~~~~~~l~~~~~~l~~~idpP~~~~I~~Al~~L~~LgALd~~~~~g~~~LT~L 306 (846)
+|+ .|.+.+.|||+|+||.++||++|. +|+.+...++|+|||.|+++++|++.|..|+|||++ | .||++
T Consensus 388 ~~~~em~~~typeilrsNL~s~VL~LKk-----lgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDd---G--nLT~l 457 (699)
T KOG0925|consen 388 AFEKEMQPQTYPEILRSNLSSTVLQLKK-----LGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDD---G--NLTSL 457 (699)
T ss_pred hhhhcCCCCCcHHHHHHhhHHHHHHHHh-----cCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCC---c--ccchh
Confidence 997 799999999999999999999975 444555677999999999999999999999999984 7 69999
Q ss_pred cceecccccchhHHHHHHHhcccCcchhhHHhHhhhccCCCcccCCC-CchHHHHHHhcccCCCCCCcccccccchhhhh
Q 003111 307 GRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPF-GDDALFAEYTGCYFGGDGNTRLLTGRKEMVIM 385 (846)
Q Consensus 307 Gr~ma~LPldP~lsk~LL~~~~~gCl~e~l~IaA~Lsv~~~pf~~P~-~~~~~a~~~~~~f~~~~gD~~~~~~~~~sd~l 385 (846)
|..|++||+||+++||||.+++|.|++|+++|+||||+.+ .|++|. +.+++|+.++..|.|.+|| |+
T Consensus 458 G~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPn-cFvRp~~~a~kaAdeak~~faH~dGD-----------Hl 525 (699)
T KOG0925|consen 458 GEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPN-CFVRPTSSASKAADEAKETFAHIDGD-----------HL 525 (699)
T ss_pred hhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCc-cccCCChhHHHHHHHHHHHhccCCcc-----------hH
Confidence 9999999999999999999999999999999999999876 899998 7788899999999999998 66
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhhhcchhhccccCchhhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCccccc
Q 003111 386 GNLCAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGT 465 (846)
Q Consensus 386 ~~lnaf~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~WC~~~fLs~~~L~~~~~ir~QL~~~l~r~~~~~~s~ 465 (846)
+++|+|+++++ ++....||++||||+++|+.++.+|.||.++|.|+.++..+.
T Consensus 526 TLlnVYhAfkq---------------------------~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st 578 (699)
T KOG0925|consen 526 TLLNVYHAFKQ---------------------------NNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCST 578 (699)
T ss_pred HHHHHHHHHHh---------------------------cCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCC
Confidence 66777776654 345688999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCcchh------------------------------hhhhcccCCCCCCcchhhcccCCCCccccceecc--
Q 003111 466 SNGLPTYYDPYEFE------------------------------HTCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA-- 513 (846)
Q Consensus 466 ~~~~p~~~~~~~~~------------------------------h~~l~k~~l~~~~y~~~~~~~~~~~k~~~R~~~~-- 513 (846)
..+.+.||.++... ..+.+...|+|++||++++++ |||+|+|++
T Consensus 579 ~F~S~~y~~nirKALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps~~l~~~PeWVlyneFvlt~----~N~ir~vt~I~ 654 (699)
T KOG0925|consen 579 DFGSRDYYVNIRKALVSGYFMQVAHLERGGHYLTVKDNQVVQLHPSTCLDHKPEWVLYNEFVLTT----KNFIRTVTDIR 654 (699)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhccCCceEEEecCceEEeccccccCCCCCeEEEeeEEeec----cceeeeecccC
Confidence 55555555543322 223556899999999999999 999999999
Q ss_pred --------cCccccccccchhHHHHHHHHHHhhh
Q 003111 514 --------VPFVAPNQFQSNNVAEKLASIIKEIR 539 (846)
Q Consensus 514 --------~~Y~~~n~f~~~eaae~l~~iiKk~r 539 (846)
|+|++.++|+++++++.+.++.+..+
T Consensus 655 pewlv~laP~YydlsNfp~~e~k~~L~~~~~~~~ 688 (699)
T KOG0925|consen 655 PEWLVELAPQYYDLSNFPPSEAKRALEQLYKVRR 688 (699)
T ss_pred HHHHHHhchhhcccccCCchHHHHHHHHHHHHHh
Confidence 99999999999999999998544443
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
| >smart00847 HA2 Helicase associated domain (HA2) Add an annotation | Back alignment and domain information |
|---|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
| >COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >smart00356 ZnF_C3H1 zinc finger | Back alignment and domain information |
|---|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
| >KOG2494 consensus C3H1-type Zn-finger protein [Transcription] | Back alignment and domain information |
|---|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
| >KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
| >smart00356 ZnF_C3H1 zinc finger | Back alignment and domain information |
|---|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4791 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
| >KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type | Back alignment and domain information |
|---|
| >KOG2333 consensus Uncharacterized conserved protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type | Back alignment and domain information |
|---|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG2494 consensus C3H1-type Zn-finger protein [Transcription] | Back alignment and domain information |
|---|
| >COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] | Back alignment and domain information |
|---|
| >COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
| >KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 846 | ||||
| 3kx2_B | 767 | Crystal Structure Of Prp43p In Complex With Adp Len | 2e-12 | ||
| 2xau_A | 773 | Crystal Structure Of The Prp43p Deah-Box Rna Helica | 2e-12 | ||
| 2cqe_A | 98 | Solution Structure Of The Zinc-Finger Domain In Kia | 1e-05 |
| >pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767 | Back alignment and structure |
|
| >pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773 | Back alignment and structure |
| >pdb|2CQE|A Chain A, Solution Structure Of The Zinc-Finger Domain In Kiaa1064 Protein Length = 98 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 3e-31
Identities = 88/347 (25%), Positives = 134/347 (38%), Gaps = 102/347 (29%)
Query: 1 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSE 60
MSAT D K++ YF D +LA+P RT + V+
Sbjct: 246 MSATLDAEKFQRYFND------APLLAVPG---RT-YP--------------VE------ 275
Query: 61 LSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNES--DIEKSILVFLP-------T 111
L Y ++ I+ VL IH E DI L+FL
Sbjct: 276 ---LYYTPEFQRDYLDSAIR---------TVLQIHATEEAGDI----LLFLTGEDEIEDA 319
Query: 112 YYALEQQWHLMKPLSSFFKVHIL--HSSVDTEQALMAMKI---------CKSHRKVILAT 160
+ + + + + + S+ Q +I + RKV+++T
Sbjct: 320 VRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQ---QRIFEPAPESHNGRPGRKVVIST 376
Query: 161 NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQV 220
NIAE+S+TI + YV+D S Q ++ +++S + +S++ A+QR GR GRT G+
Sbjct: 377 NIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKC 436
Query: 221 YRLVTKSFFGT-LEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKAL-------- 271
+RL T+ F L + P ILR +L VL K L
Sbjct: 437 FRLYTEEAFQKELIEQSYPEILRSNL----------------SSTVLELKKLGIDDLVHF 480
Query: 272 ---DPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSL 315
DPP PE + AL+ L+ L + G T GRL + F L
Sbjct: 481 DFMDPPAPETMMRALEELN---YLACLDDEGNL--TPLGRLASQFPL 522
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 | Back alignment and structure |
|---|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 | Back alignment and structure |
|---|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 | Back alignment and structure |
|---|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 | Back alignment and structure |
|---|
| >2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 | Back alignment and structure |
|---|
| >2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 | Back alignment and structure |
|---|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
| >3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70 | Back alignment and structure |
|---|
| >2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98 | Back alignment and structure |
|---|
| >2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Length = 89 | Back alignment and structure |
|---|
| >2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Length = 80 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 846 | |||
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 100.0 | |
| 3i4u_A | 270 | ATP-dependent RNA helicase DHX8; splicing, ATP-bin | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.97 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.96 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.94 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.84 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.82 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.65 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.6 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.56 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.53 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.5 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.47 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.44 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.43 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.43 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.42 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.41 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.39 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.38 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.38 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.38 | |
| 2d9n_A | 77 | Cleavage and polyadenylation specificity factor, 3 | 99.34 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.34 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.32 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.32 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.32 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.32 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.31 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.31 | |
| 2rhk_C | 72 | Cleavage and polyadenylation specificity factor su | 99.31 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.3 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.3 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.3 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.3 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.29 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.25 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 98.89 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.24 | |
| 2cqe_A | 98 | KIAA1064 protein; CCCH zinc-finger, structural gen | 99.24 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.24 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.23 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.21 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 99.2 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.2 | |
| 1m9o_A | 77 | Tristetraproline; Cys3His type zinc finger, metal | 99.17 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.17 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.15 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.15 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.15 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.13 | |
| 3d2q_A | 70 | Muscleblind-like protein 1; tandem zinc finger dom | 99.09 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.08 | |
| 2e5s_A | 98 | Otthump00000018578; ZF-CCCHX2 domain, muscleblind- | 99.04 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.03 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.03 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.01 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.0 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.0 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 98.99 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 98.99 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 98.92 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 98.91 | |
| 3d2n_A | 83 | Muscleblind-like protein 1; tandem zinc finger dom | 98.88 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 98.86 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 98.79 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 98.78 | |
| 2rpp_A | 89 | Muscleblind-like protein 2; zinc finger domain, C3 | 98.76 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 98.74 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 98.64 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 98.63 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 98.39 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 98.36 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 98.32 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 98.06 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 98.01 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 97.84 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 97.73 | |
| 2d9n_A | 77 | Cleavage and polyadenylation specificity factor, 3 | 97.44 | |
| 2cqe_A | 98 | KIAA1064 protein; CCCH zinc-finger, structural gen | 97.15 | |
| 3u9g_A | 229 | Zinc finger CCCH-type antiviral protein 1; zinc fi | 97.14 | |
| 2rhk_C | 72 | Cleavage and polyadenylation specificity factor su | 97.14 | |
| 2d9m_A | 69 | Zinc finger CCCH-type domain containing protein 7A | 96.57 | |
| 1m9o_A | 77 | Tristetraproline; Cys3His type zinc finger, metal | 96.46 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 96.38 | |
| 2rpp_A | 89 | Muscleblind-like protein 2; zinc finger domain, C3 | 96.2 | |
| 2e5s_A | 98 | Otthump00000018578; ZF-CCCHX2 domain, muscleblind- | 96.11 | |
| 2lhn_A | 80 | Nuclear polyadenylated RNA-binding protein NAB2; n | 94.86 | |
| 3d2q_A | 70 | Muscleblind-like protein 1; tandem zinc finger dom | 95.8 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 95.66 | |
| 2fc6_A | 50 | Nuclear, target of EGR1, member 1; structure genom | 95.45 | |
| 2d9m_A | 69 | Zinc finger CCCH-type domain containing protein 7A | 95.43 | |
| 2fc6_A | 50 | Nuclear, target of EGR1, member 1; structure genom | 94.89 | |
| 3d2n_A | 83 | Muscleblind-like protein 1; tandem zinc finger dom | 94.81 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 92.3 | |
| 2lhn_A | 80 | Nuclear polyadenylated RNA-binding protein NAB2; n | 91.43 | |
| 3u1l_A | 240 | PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; | 90.97 | |
| 3u1l_A | 240 | PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; | 89.34 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 83.31 |
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-63 Score=601.31 Aligned_cols=448 Identities=25% Similarity=0.317 Sum_probs=376.2
Q ss_pred CCCCcChHHHHHHhccCCCCccceEEEecCCCcCccccceechhHHHHHHhcCCCCCCcccccccccCCCCCCccccccC
Q 003111 1 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 80 (846)
Q Consensus 1 MSAT~d~~~f~~yF~~~~~~~~~~vi~ipg~~~~r~fPV~~~YLedv~~~l~~~~~~~~e~~~~~y~~~~~~~~~~~~i~ 80 (846)
||||+|.+.|++||++ ++++.++| +.|||+++|++. +..
T Consensus 246 ~SAT~~~~~l~~~~~~------~~vi~v~g----r~~pv~~~~~~~-----------------------~~~-------- 284 (773)
T 2xau_A 246 MSATLDAEKFQRYFND------APLLAVPG----RTYPVELYYTPE-----------------------FQR-------- 284 (773)
T ss_dssp EESCSCCHHHHHHTTS------CCEEECCC----CCCCEEEECCSS-----------------------CCS--------
T ss_pred EeccccHHHHHHHhcC------CCcccccC----cccceEEEEecC-----------------------Cch--------
Confidence 7999999999999974 68899998 789999988652 011
Q ss_pred hhHHHHHHHHHHHHHHhCCCcccceEEEcCcHHHHHHHHHHhcC---------CCCCcEEEEecCCccHHHHHHHhhcc-
Q 003111 81 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP---------LSSFFKVHILHSSVDTEQALMAMKIC- 150 (846)
Q Consensus 81 ~~~~~li~~li~~I~~~~~~~~G~ILVFLPg~~eI~~~~~~L~~---------~~~~~~v~~Lhs~l~~~~~~~~~~~~- 150 (846)
+..+.++..+.+++..++ +|+||||+||.++++.++..|.. ....+.+.++||+|+.++|..+++.+
T Consensus 285 -~~~~~~l~~l~~~~~~~~--~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~ 361 (773)
T 2xau_A 285 -DYLDSAIRTVLQIHATEE--AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAP 361 (773)
T ss_dssp -CHHHHHHHHHHHHHHHSC--SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCC
T ss_pred -hHHHHHHHHHHHHHHhcC--CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcc
Confidence 123344567778887755 57999999999999999888863 22468899999999999998888765
Q ss_pred -----CCCeEEEEecCCCccccCCCCeEEEEeCCCcceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCCcEEEeec
Q 003111 151 -----KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVT 225 (846)
Q Consensus 151 -----~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G~c~rLyt 225 (846)
.|.+||||||||||+|||||+|+||||+|+.|.+.||+..+++.|.+.|+|++++.||+|||||..+|.||+||+
T Consensus 362 ~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~ 441 (773)
T 2xau_A 362 ESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYT 441 (773)
T ss_dssp CCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSC
T ss_pred cccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEec
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc-ccccccccchhhhhhhHHHHHHHhhhhcccCCChhhhhccccCCCChhhHHHHHHHHHhcCCcccCCCCCCcccc
Q 003111 226 KSFF-GTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPT 304 (846)
Q Consensus 226 ~~~~-~~l~~~~~PEI~r~~L~~~vL~lk~~~~~~l~~~~~~l~~~idpP~~~~I~~Al~~L~~LgALd~~~~~g~~~LT 304 (846)
++.| ..+.+++.|||+|.+|++++|.++.+| +++. ..++|++||+.++|.+|++.|..+||||++ | +||
T Consensus 442 ~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~g---i~~~--~~f~~~~~p~~~~i~~a~~~L~~lgald~~---~--~lT 511 (773)
T 2xau_A 442 EEAFQKELIEQSYPEILRSNLSSTVLELKKLG---IDDL--VHFDFMDPPAPETMMRALEELNYLACLDDE---G--NLT 511 (773)
T ss_dssp HHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTT---CCCG--GGCCCSSCCCHHHHHHHHHHHHHTTSBCTT---S--CBC
T ss_pred HHHhcccccccCCCccccCcHHHHHHHHHHcC---CCCh--hhccccCCCcHHHHHHHHHHHHHcCCcccC---C--CcC
Confidence 9999 579999999999999999999998765 3333 345899999999999999999999999873 5 699
Q ss_pred cccceecccccchhHHHHHHHhcccCcchhhHHhHhhhccCCCcccCCCCchHHHHHHhcccCCCCCCcccccccchhhh
Q 003111 305 FYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVI 384 (846)
Q Consensus 305 ~LGr~ma~LPldP~lsk~LL~~~~~gCl~e~l~IaA~Lsv~~~pf~~P~~~~~~a~~~~~~f~~~~gD~~~~~~~~~sd~ 384 (846)
++|+.|+.||+||++||||+.+..++|++++++|||||++++ +|.+|.+++++++.++.+|.+++|| |
T Consensus 512 ~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~-~f~~~~~~~~~~~~~~~~f~~~~~D-----------~ 579 (773)
T 2xau_A 512 PLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPN-VFIRPTKDKKRADDAKNIFAHPDGD-----------H 579 (773)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCC-CBCCCTTCHHHHHHHHHTTCCTTBH-----------H
T ss_pred hhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcccCC-cccCChHHHHHHHHHHHhccCCCCc-----------H
Confidence 999999999999999999999999999999999999999876 9999999999899999899877765 9
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhhhhhcchhhccccCchhhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCcccc
Q 003111 385 MGNLCAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLG 464 (846)
Q Consensus 385 l~~lnaf~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~WC~~~fLs~~~L~~~~~ir~QL~~~l~r~~~~~~s 464 (846)
++.+|+|+.|.....+ .....+||++|||++++|+++.+++.||.++|.++++...+
T Consensus 580 ~~~l~~~~~~~~~~~~-----------------------~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~ 636 (773)
T 2xau_A 580 ITLLNVYHAFKSDEAY-----------------------EYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNT 636 (773)
T ss_dssp HHHHHHHHHHTSHHHH-----------------------HHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHhccc-----------------------cchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence 9999999999753210 11126899999999999999999999999999998776543
Q ss_pred cCCCCC------------------------CC-CCCcch-----hh-hhhcccCCCCCCcchhhcccCCCCccccceecc
Q 003111 465 TSNGLP------------------------TY-YDPYEF-----EH-TCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA 513 (846)
Q Consensus 465 ~~~~~p------------------------~~-~~~~~~-----~h-~~l~k~~l~~~~y~~~~~~~~~~~k~~~R~~~~ 513 (846)
.....+ .. |..... .| ...+...++|++|++++.++ ++|+|.|++
T Consensus 637 ~~~~~~~~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~~~~~~~v~~e~~~t~----~~~~~~~~~ 712 (773)
T 2xau_A 637 TDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHDAEWVIYNEFVLTS----KNYIRTVTS 712 (773)
T ss_dssp CCTTSTTHHHHHHHHHHHHHTTSEEEECCC--CEEETTTCCEEEECTTCCCCTTCSEEEEEEEEESS----SEEEEEEEE
T ss_pred CCCCchhhHHHHHHHHHHhChHhheeeccCCCcceEeeCCCEEEECCCcccCCCCCEEEEEEeeccc----hhheeeccc
Confidence 210000 00 211000 11 11333458999999999988 899999998
Q ss_pred ----------cCccccccccchhHHHHHHHHHHhhhhh
Q 003111 514 ----------VPFVAPNQFQSNNVAEKLASIIKEIRVQ 541 (846)
Q Consensus 514 ----------~~Y~~~n~f~~~eaae~l~~iiKk~r~q 541 (846)
|+|+....+...++++.+..+.+++...
T Consensus 713 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (773)
T 2xau_A 713 VRPEWLIEIAPAYYDLSNFQKGDVKLSLERIKEKVDRL 750 (773)
T ss_dssp CCHHHHHHHCTTTSCGGGCCSSHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHheeeccCCchhHHHHHHHHHHHhhhh
Confidence 9999999999999999999988887543
|
| >3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
| >2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
| >2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 | Back alignment and structure |
|---|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
| >1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A | Back alignment and structure |
|---|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
| >3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A | Back alignment and structure |
|---|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
| >2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
| >2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 | Back alignment and structure |
|---|
| >3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
| >2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A | Back alignment and structure |
|---|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
| >2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A | Back alignment and structure |
|---|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 | Back alignment and structure |
|---|
| >2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 | Back alignment and structure |
|---|
| >3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A | Back alignment and structure |
|---|
| >3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A | Back alignment and structure |
|---|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 846 | ||||
| d1yksa2 | 299 | c.37.1.14 (A:325-623) YFV helicase domain {Yellow | 2e-24 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 4e-15 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 7e-05 | |
| d2cqea1 | 56 | g.66.1.1 (A:458-513) Zinc finger CCCH domain-conta | 0.001 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 0.001 |
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 102 bits (255), Expect = 2e-24
Identities = 38/220 (17%), Positives = 71/220 (32%), Gaps = 11/220 (5%)
Query: 76 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILH 135
N EI+ + + H ++ FLP+ A ++ V +L+
Sbjct: 10 NGEIEDVQTDIPSEPWNTGHDWILADKRPTAWFLPSIRAANVMAASLRKAG--KSVVVLN 67
Query: 136 SSVDTEQALMAMKICKSHRKVILATNIAESSVTIPKVAYVIDSCRSL-QVFWDVNRKIDS 194
+ I + ILAT+IAE + V V+D + V D RK+
Sbjct: 68 RKTFEREY---PTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAI 123
Query: 195 AELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLSLRLQVLLICC 254
+ +S S A QRRGR GR + S ++ + L + + +
Sbjct: 124 KGPLRISASSAAQRRGRIGRN-PNRDGDSYYYS--EPTSENNAHHVCWLEASMLLDNMEV 180
Query: 255 AESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQK 294
++ + E+ + ++
Sbjct: 181 RG-GMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFRELVRN 219
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
| >d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Length = 56 | Back information, alignment and structure |
|---|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 846 | |||
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.95 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.41 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.38 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.36 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.35 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.34 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.34 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.34 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.31 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.3 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.3 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.23 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.11 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.11 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 98.98 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 98.93 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.83 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 98.48 | |
| d2cqea2 | 29 | Zinc finger CCCH domain-containing protein C19orf7 | 98.18 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 98.12 | |
| d2cqea2 | 29 | Zinc finger CCCH domain-containing protein C19orf7 | 97.68 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 97.68 | |
| d1m9oa_ | 40 | Tristetraproline (ttp, tis11, nup475) {Mouse (Mus | 97.67 | |
| d1rgoa2 | 34 | Butyrate response factor 2 (Tis11D) {Human (Homo s | 97.66 | |
| d1rgoa1 | 36 | Butyrate response factor 2 (Tis11D) {Human (Homo s | 97.62 | |
| d1m9oa_ | 40 | Tristetraproline (ttp, tis11, nup475) {Mouse (Mus | 97.61 | |
| d1rgoa2 | 34 | Butyrate response factor 2 (Tis11D) {Human (Homo s | 97.4 | |
| d1rgoa1 | 36 | Butyrate response factor 2 (Tis11D) {Human (Homo s | 97.38 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 97.26 | |
| d2cqea1 | 56 | Zinc finger CCCH domain-containing protein C19orf7 | 97.12 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 96.67 | |
| d2cqea1 | 56 | Zinc finger CCCH domain-containing protein C19orf7 | 96.53 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 96.26 | |
| d2fc6a1 | 37 | Target of EGR1 protein 1, TOE1 {Human (Homo sapien | 89.53 | |
| d2fc6a1 | 37 | Target of EGR1 protein 1, TOE1 {Human (Homo sapien | 87.78 |
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.95 E-value=7.6e-31 Score=281.26 Aligned_cols=197 Identities=18% Similarity=0.100 Sum_probs=144.7
Q ss_pred ccceEEEcCcHHHHHHHHHHhcCCCCCcEEEEecCCccHHHHHHHhhccCCCeEEEEecCCCccccCCCCeEEEEeCCCc
Q 003111 102 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIPKVAYVIDSCRS 181 (846)
Q Consensus 102 ~G~ILVFLPg~~eI~~~~~~L~~~~~~~~v~~Lhs~l~~~~~~~~~~~~~~~rKVIlATnIAEtsiTIp~V~yVIDsG~~ 181 (846)
+|++|||||+..++++++..|...+ ..|++|||.++.++++.+ ..+.++|||||||||+|+|| +|.||||+|+.
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~g--~~V~~l~~~~~~~e~~~~---~~~~~~~~~~t~~~~~~~~~-~~~~vid~g~~ 109 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKAG--KSVVVLNRKTFEREYPTI---KQKKPDFILATDIAEMGANL-CVERVLDCRTA 109 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT--CCEEECCSSSCC-----------CCCSEEEESSSTTCCTTC-CCSEEEECCEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcC--CeEEEEcCcCcHhHHhhh---hcCCcCEEEEechhhhceec-CceEEEecCce
Confidence 4789999999999999999998765 679999999987776543 46778999999999999999 69999999995
Q ss_pred -ceeeecCCCCcccceeeecCHhhHHhhcCCCCCCCCC-cEEEeecccccc---cccccccchhhhhhhHHHHHHHhhhh
Q 003111 182 -LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDG-QVYRLVTKSFFG---TLEDHECPAILRLSLRLQVLLICCAE 256 (846)
Q Consensus 182 -k~~~yd~~~~~~~l~~~~ISkasa~QR~GRaGR~~~G-~c~rLyt~~~~~---~l~~~~~PEI~r~~L~~~vL~lk~~~ 256 (846)
|...||+.+++..+...|||+|+|.||+||+||...| .||.+|+..... .+...+.++|++.++ .+.++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~~~~~~d~~~~~~~te~~i~l~~i---~l~~~~-- 184 (299)
T d1yksa2 110 FKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNM---EVRGGM-- 184 (299)
T ss_dssp EEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTS---CCGGGC--
T ss_pred eceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEEeCCCCCCcccchhhhhhHHHHhhCc---cccccc--
Confidence 8889999999999999999999999999999998654 356666654322 122333344443333 233332
Q ss_pred cccCCChhhhhccccCCCChhhHHHHHHHHHhcCCcccCCCCCCcccccccceecccccch
Q 003111 257 SKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSF 317 (846)
Q Consensus 257 ~~~l~~~~~~l~~~idpP~~~~I~~Al~~L~~LgALd~~~~~g~~~LT~LGr~ma~LPldP 317 (846)
++......++++++|+.+....+++.|..+|||+.. . .+|.+|+.|+.+++.+
T Consensus 185 ---~g~~~~~e~~~~~~p~g~~~L~~~~~l~~l~aL~~~----d-~p~~La~~va~~~~~~ 237 (299)
T d1yksa2 185 ---VAPLYGVEGTKTPVSPGEMRLRDDQRKVFRELVRNC----D-LPVWLSWQVAKAGLKT 237 (299)
T ss_dssp ---CCCCSTTHHHHSSSCTTTTCCCHHHHHHHHHHHHTT----C-CCHHHHHHHHHTTCCT
T ss_pred ---ccccchhhhccccCCCchhhhhHhHHHHHHHHHhhc----C-CCcchHHHHHhccccc
Confidence 233333445788999888888899999999999762 1 3556666666655544
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
| >d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|