Citrus Sinensis ID: 003112

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840------

MASKASPSASPNRSEPLKSSSLTKTENGTLTRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSHISQEDGYASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDSEEEVIEEEEKKDFVDSEDYILRMTIKEVGLSDATLESLAQCFSRSPSEVKARYEILSKEESAVGGSNNGNDEHTMNNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISSSDGAGAQTSSRKKFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANSSSHKHAKSSSSGKTRKKEMQIQDSRNLMHVRVPLGSSQEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQATYIAHLYFD

cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEcccccccccccEEEEccccccccccccccccccccccccccEEEEccccccccccHHHHcccccccccHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHcccHHHHHHcccccccccHHccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccEEEEEEEEcccccEEEEccccccccEEEEcccccccHHHHHHHHHHHHccccEEEEEcccccEEEcccccc

cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccHHccccccccccccccccccccccccEEEEccccccccEEccccccccccccccEEEEEEcccccccccccEEEEEEEEEEccccEEEEEcccHHccccHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHEEEEcccccccccccccccccccccccccccccccccHHEEEEccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccHcccccccccccccccccccccHHHHHHcccEEEEEccccccccccHHHHHHccccccccccccccccccccccccccccccEcHHccccccHHHccccccccccccccccccccHHEccccccHHHHcccccccccccccccccccccccccHHHHcccccEEEEEccccccccHEEHcccccccEEEEEccEEEcHHHHHHcccEEEccccEEEEEccccEEEEcccccc

maskaspsaspnrseplksssltktengtltRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLErrnnqtinthGSVDLLTKRQREALgvqngidvssgdrdshisqedgyastavygssnptkniirpiklndnkrlppyttwifldrnqrmtedqsvMSRRRIyydqnggealicsdseeevieeeekkdfvdseDYILRMTIkevglsdatLESLAQcfsrspsevKARYEILSKeesavggsnngndehtmNNFLVKDLEAALDSFDNLFCRRCLvfdcrlhgcsqdlvfpaekqplwyhldegnvpcgphcyrsvlksernatacsplngdikekfisssdgagaqtssrkkfsgparrvkshqsesassnaknlsessdsevgqrqdtafthhsspsksklvgkvgickrkSKRVAERALVCKQKKQKkmaafdldsvasggvlpsdmklrstsrkenedanssshkhakssssgktrkkeMQIQDSRNLMHvrvplgssqeivsnppaistndslrkdEFVAENMckqelsdeKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTcsenklfcqaGDAATSLLEgyskfdfngttgnnevRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRIterkdqpcrqynpcgcqtacgkqcpcllngtccekycgcpkscknrfrgchcaksqcrsrqcpcfaadrecdpdvcrncwiscgdgslgvpdqkgdnyeCRNMKLLLKQQQRVLlgrsdvsgwgAFLKnsvgkheylgeYTGELISHreadkrgkiydrenssflfnlndqATYIAHLYFD

maskaspsaspnrseplksssltktengtltRKEILSVIDCLKNQVAADHfvsvqrrveknrqkligvtnhlyrlslerrnnqtinthgsvDLLTKRQREALGVqngidvssgdrdsHISQEDGyastavygssnptkniirpiklndnkrlppyttwifldrnqrmtedqsvmsRRRIYYDQNGGEALICSDSEEEVIEeeekkdfvdsedYILRMTIKEVGLSDATLESLaqcfsrspseVKARYEILSKeesavggsnngndEHTMNNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFisssdgagaqtssrkkfsgparrvkshqsesassnaknlsessdseVGQRQDTafthhsspsksklvgkvgickrkskrvaeralvckqkkqkkmaafdldsvasggvlpsdmklrstsrkenedanssshkhakssssgktrkkeMQIQDSRNLMHVRVPLgssqeivsnppaistndslRKDEFVAENMCkqelsdekswKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSkfdfngttgnnevrrrsrylrrrgrvrrlkytwksaayhsirkriterkdqpcRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENssflfnlndqatyiaHLYFD

MASKASPSASPNRSEPLKSSSLTKTENGTLTRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSHISQEDGYASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDSeeevieeeeKKDFVDSEDYILRMTIKEVGLSDATLESLAQCFSRSPSEVKARYEILSKEESAVGGSNNGNDEHTMNNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISSSDGAGAQTSSRKKFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANssshkhakssssGKTRKKEMQIQDSRNLMHVRVPLGSSQEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVrrrsrylrrrgrvrrLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMklllkqqqRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQATYIAHLYFD

******************************TRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLL********************************************NIIRPIKLNDNKRLPPYTTWIFLDRN***********RRRIYYDQNGGEALIC***************FVDSEDYILRMTIKEVGLSDATLESLAQCF*********************************NNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKS**************************************************************************************KVGICK********RALVC*****************************************************************************************************************SWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFN************************KYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQATYIAHLYF*

*************************************VIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRL**************************************************************KNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDSEEEVIEEEEKKDFVDSEDYILRMTIKEVGLSDATLESLAQCFSRSP**************************************AALDSFDNLFCRRCLVFDCRLHG************************CGPHCYRSV*********************************************************************************************************************************************************************************************************************************IEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCS*************************************************************R*RITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQATYIAHLYFD

************************TENGTLTRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGID***********QEDGYASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDS***********DFVDSEDYILRMTIKEVGLSDATLESLAQCFSRSPSEVKARYEILSKEESAVGGSNNGNDEHTMNNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISS***************************************************************VGKVGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDM***********************************IQDSRNLMHVRVPLGSSQEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGC***********CPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQATYIAHLYFD

******************************TRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQ*****GSVDLLTKRQREALGVQNGIDVSSGDRDSHISQEDGYASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDSEEEVIEEEEKKDFVDSEDYILRMTIKEVGLSDATLESLAQCFSRSPSEVKARYEILSKEE***************NNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKS*************************************************************************************************************************************************************************************************************************KSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSE**********************************RSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCG*GSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQATYIAH****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		846	2.2.26 [Sep-21-2011]
P93831		902	Histone-lysine N-methyltr	yes	no	0.946	0.888	0.608	0.0
Q8S4P6		931	Histone-lysine N-methyltr	N/A	no	0.960	0.873	0.562	0.0
Q8S4P4		895	Histone-lysine N-methyltr	N/A	no	0.882	0.834	0.446	1e-159
Q9ZSM8		856	Histone-lysine N-methyltr	no	no	0.332	0.328	0.664	1e-110
Q8S4P5		894	Histone-lysine N-methyltr	N/A	no	0.371	0.351	0.598	1e-103
O65312		689	Histone-lysine N-methyltr	no	no	0.301	0.370	0.505	4e-76
A7E2Z2		747	Histone-lysine N-methyltr	yes	no	0.283	0.321	0.375	4e-39
Q92800		747	Histone-lysine N-methyltr	yes	no	0.283	0.321	0.368	6e-39
Q5RDS6		747	Histone-lysine N-methyltr	yes	no	0.283	0.321	0.368	6e-39
P70351		747	Histone-lysine N-methyltr	yes	no	0.283	0.321	0.371	1e-38

>sp\|P93831\|CLF_ARATH Histone-lysine N-methyltransferase CLF OS=Arabidopsis thaliana GN=CLF PE=1 SV=2	Back alignment and function desciption

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/835 (60%), Positives = 605/835 (72%), Gaps = 34/835 (4%)

Query: 13  RSEPLKSSSLTKTENGTLTRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHL 72
           RSEP K S     E      KE+  VI+ LK ++AAD  +S+++R+++N++ L  +T   
Sbjct: 13  RSEPPKDSP---AEERGPASKEVSEVIESLKKKLAADRCISIKKRIDENKKNLFAITQSF 69

Query: 73  YRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSHISQEDGYASTA-VY 131
            R S+ER  +         DLL KRQR++ G+++GID S+ +R      EDG AS+  V 
Sbjct: 70  MRSSMERGGS----CKDGSDLLVKRQRDSPGMKSGIDESNNNR----YVEDGPASSGMVQ 121

Query: 132 GSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALIC 191
           GSS P K  +RPIK+ D KRL PYTTW+FLDRNQRMTEDQSV+ RRRIYYDQ GGEALIC
Sbjct: 122 GSSVPVKISLRPIKMPDIKRLSPYTTWVFLDRNQRMTEDQSVVGRRRIYYDQTGGEALIC 181

Query: 192 SDSEEEVIEEEE-KKDFVDSEDYILRMTIKEVGLSDATLESLAQCFSRSPSEVKARYEIL 250
           SDSEEE I++EE K+DF++ EDYI+RMT++++GLSD+ L  LA   SRS SE+KAR+ +L
Sbjct: 182 SDSEEEAIDDEEEKRDFLEPEDYIIRMTLEQLGLSDSVLAELASFLSRSTSEIKARHGVL 241

Query: 251 SKEESAVGGSNNGNDEHTMNNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPA 310
            KE+      +   D    ++ L KD+E ALDSFDNLFCRRCLVFDCRLHGCSQDL+FPA
Sbjct: 242 MKEKEV----SESGDNQAESSLLNKDMEGALDSFDNLFCRRCLVFDCRLHGCSQDLIFPA 297

Query: 311 EKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISSSDGAGAQTSSRK 370
           EK   W    + N+ CG +CY+++LKS R      P  G I+ K  +SSDGAG +T+  K
Sbjct: 298 EKPAPWCPPVDENLTCGANCYKTLLKSGR-----FPGYGTIEGKTGTSSDGAGTKTTPTK 352

Query: 371 ---KFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGI 427
              K +G  R+ K+  SESASSN K   E+SDSE G +QDT     SS  K K  G+   
Sbjct: 353 FSSKLNG--RKPKTFPSESASSNEKCALETSDSENGLQQDTNSDKVSSSPKVKGSGRRVG 410

Query: 428 CKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANSSSHK 487
            KR   RVAER     QK+QKK  A D DS+ASG   PSD K      K+NEDA SSS K
Sbjct: 411 RKRNKNRVAERVPRKTQKRQKKTEASDSDSIASGSCSPSDAK-----HKDNEDATSSSQK 465

Query: 488 HAKSSSSGKTRKKEMQIQDSRNLMHVRVPLGSSQEIVSNPPAISTNDSLRKDEFVAENMC 547
           H KS +SGK+RK     + S N +   VP+  S E+ S   A  +++SLRK+EF+ E + 
Sbjct: 466 HVKSGNSGKSRKNGTPAEVSNNSVKDDVPVCQSNEVASELDAPGSDESLRKEEFMGETVS 525

Query: 548 KQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQ 607
           +  L+  K W+ +EK LFDKGVEIFG NSCLIARNLL+G K+CWEVFQYMTCSENK    
Sbjct: 526 RGRLATNKLWRPLEKSLFDKGVEIFGMNSCLIARNLLSGFKSCWEVFQYMTCSENKASFF 585

Query: 608 AGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITE 667
            GD      +G SKFD NG   NN+VRRRSR+LRRRG+VRRLKYTWKSAAYHSIRKRITE
Sbjct: 586 GGDGLNP--DGSSKFDINGNMVNNQVRRRSRFLRRRGKVRRLKYTWKSAAYHSIRKRITE 643

Query: 668 RKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQC 727
           +KDQPCRQ+NPC C+ ACGK+CPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQC
Sbjct: 644 KKDQPCRQFNPCNCKIACGKECPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQC 703

Query: 728 PCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSG 787
           PCFAADRECDPDVCRNCW+  GDGSLGVP Q+GDNYECRNMKLLLKQQQRVLLG SDVSG
Sbjct: 704 PCFAADRECDPDVCRNCWVIGGDGSLGVPSQRGDNYECRNMKLLLKQQQRVLLGISDVSG 763

Query: 788 WGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQATYIAH 842
           WGAFLKNSV KHEYLGEYTGELISH+EADKRGKIYDREN SFLFNLNDQ    A+
Sbjct: 764 WGAFLKNSVSKHEYLGEYTGELISHKEADKRGKIYDRENCSFLFNLNDQFVLDAY 818

Polycomb group (PcG) protein. Catalytic subunit of some PcG multiprotein complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target genes. Required to regulate floral development by repressing the AGAMOUS homeotic gene in leaves, influorescence stems and flowers. Regulates the antero-posterior organization of the endosperm, as well as the division and elongation rates of leaf cells. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3

>sp\|Q8S4P6\|EZ1_MAIZE Histone-lysine N-methyltransferase EZ1 OS=Zea mays GN=EZ1 PE=2 SV=1	Back alignment and function description

>sp\|Q8S4P4\|EZ3_MAIZE Histone-lysine N-methyltransferase EZ3 OS=Zea mays GN=EZ3 PE=2 SV=1	Back alignment and function description

>sp\|Q9ZSM8\|EZA1_ARATH Histone-lysine N-methyltransferase EZA1 OS=Arabidopsis thaliana GN=EZA1 PE=2 SV=1	Back alignment and function description

>sp\|Q8S4P5\|EZ2_MAIZE Histone-lysine N-methyltransferase EZ2 OS=Zea mays GN=EZ2 PE=2 SV=1	Back alignment and function description

>sp\|O65312\|MEDEA_ARATH Histone-lysine N-methyltransferase MEDEA OS=Arabidopsis thaliana GN=MEA PE=1 SV=1	Back alignment and function description

>sp\|A7E2Z2\|EZH1_BOVIN Histone-lysine N-methyltransferase EZH1 OS=Bos taurus GN=EZH1 PE=2 SV=2	Back alignment and function description

>sp\|Q92800\|EZH1_HUMAN Histone-lysine N-methyltransferase EZH1 OS=Homo sapiens GN=EZH1 PE=1 SV=2	Back alignment and function description

>sp\|Q5RDS6\|EZH1_PONAB Histone-lysine N-methyltransferase EZH1 OS=Pongo abelii GN=EZH1 PE=2 SV=1	Back alignment and function description

>sp\|P70351\|EZH1_MOUSE Histone-lysine N-methyltransferase EZH1 OS=Mus musculus GN=Ezh1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		846
224084364		917	SET domain protein [Populus trichocarpa]	0.960	0.886	0.714	0.0
224094296		892	SET domain protein [Populus trichocarpa]	0.945	0.896	0.726	0.0
296082393		934	unnamed protein product [Vitis vinifera]	0.971	0.880	0.715	0.0
225438762		950	PREDICTED: histone-lysine N-methyltransf	0.953	0.849	0.726	0.0
449463949		927	PREDICTED: LOW QUALITY PROTEIN: histone-	0.988	0.901	0.689	0.0
356540672		869	PREDICTED: histone-lysine N-methyltransf	0.895	0.872	0.649	0.0
374306302		897	CLF-like protein [Aquilegia coerulea]	0.950	0.896	0.629	0.0
357482819		870	Histone-lysine N-methyltransferase CLF [	0.895	0.871	0.643	0.0
34393748		922	PHCLF1 [Petunia x hybrida]	0.962	0.882	0.631	0.0
350536571		921	EZ2 protein [Solanum lycopersicum] gi\|15	0.985	0.905	0.620	0.0

>gi\|224084364\|ref\|XP_002307273.1\| SET domain protein [Populus trichocarpa] gi\|222856722\|gb\|EEE94269.1\| SET domain protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1137 bits (2942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/836 (71%), Positives = 677/836 (80%), Gaps = 23/836 (2%)

Query: 13  RSEPLKSSSLTKT-ENGTLTRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNH 71
           RSEP K S + K+ ++ TL  +E+L VI+ LK QVAAD  + V +R+E+NRQKL+G+TNH
Sbjct: 16  RSEPPKDSPMIKSNQDTTLASEEVLLVIESLKKQVAADRCIYVMKRMEENRQKLVGITNH 75

Query: 72  LYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSHISQEDGYASTAVY 131
           L +LS ER+NN    T  S+DL TKRQ +AL +  GID ++ D+DSH S+EDG+ASTAV 
Sbjct: 76  LDKLSKERKNNWISGTDNSIDLFTKRQNDALSMHGGIDSTNVDKDSHGSEEDGHASTAVL 135

Query: 132 -GSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALI 190
            GSS P KN +RPIKL +  RLPPYT+W+FLDRNQRMTEDQSV+ RRRIYYDQNGGEALI
Sbjct: 136 LGSSIPVKNAVRPIKLPEVNRLPPYTSWVFLDRNQRMTEDQSVVGRRRIYYDQNGGEALI 195

Query: 191 CSDSEEEVIEEEE-KKDFVDSEDYILRMTIKEVGLSDATLESLAQCFSRSPSEVKARYEI 249
           CSDSEEE+I+EEE K+ FV+SEDYILRMTIKE G SD  +ESLA CFSRSPSEVKAR+E+
Sbjct: 196 CSDSEEEIIDEEEAKRYFVESEDYILRMTIKEAGSSDPVVESLAHCFSRSPSEVKARFEV 255

Query: 250 LSKEESAVGGSNNGNDE-HTMNNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVF 308
           L KEE AV  S N + E  T+N+FLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDL+F
Sbjct: 256 LKKEEKAVEDSKNKDIEAQTLNSFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLIF 315

Query: 309 PAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISSSDGAGAQTSS 368
            AEKQ  W +  E N+ CG HCY+              L+G I+E  I  SDGA    SS
Sbjct: 316 LAEKQSPWSY-PEDNITCGSHCYK--------------LHGVIEENSICQSDGARVPISS 360

Query: 369 RKKFSGPA--RRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVG 426
           RKK S  +  R VKS QSESASSNAKN+SESSDSE+G  QDT+ T   SPSKS LVGK G
Sbjct: 361 RKKTSASSARRNVKSCQSESASSNAKNISESSDSEIGPHQDTSPTSQISPSKSMLVGKGG 420

Query: 427 ICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANSSSH 486
            CKR SKRVAER L C +K+QKKM A D DSVASGG+L  D+K RSTS K  EDA SSSH
Sbjct: 421 TCKRNSKRVAERVLSCMRKRQKKMVASDSDSVASGGLLSIDLKRRSTSHKGKEDA-SSSH 479

Query: 487 KHAKSSSSGKTRKKEMQIQDSRNLMHVRVPLGSSQEIVSNPPAISTNDSLRKDEFVAENM 546
           K+AKS +  ++R+KE+  QDS NL+      G S E+V+NPP  S++D+LRK+EF+ E+ 
Sbjct: 480 KNAKSPTIARSRRKELMNQDSHNLVQGEFHDGLSSEMVANPPVTSSDDTLRKEEFIDEHK 539

Query: 547 CKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFC 606
           CK+ELSD++SWK IEKGLF+KGVEIFG NSCLIARNLLNGLKTCWEVFQYMT SEN+  C
Sbjct: 540 CKKELSDDRSWKAIEKGLFEKGVEIFGGNSCLIARNLLNGLKTCWEVFQYMTRSENRPAC 599

Query: 607 QAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRIT 666
           +AGDA T L EGYSKFDFNGT   NE RRRSR+LRRR +VRRLKY+WKS AYHS RKRIT
Sbjct: 600 EAGDAGT-LGEGYSKFDFNGTMVKNEARRRSRFLRRRSKVRRLKYSWKSTAYHSFRKRIT 658

Query: 667 ERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQ 726
           ERKDQPCRQYNPC CQTACGKQC CLLNGTCCEKYC CPKSCKNRFRGCHCAKSQCRSRQ
Sbjct: 659 ERKDQPCRQYNPCSCQTACGKQCTCLLNGTCCEKYCRCPKSCKNRFRGCHCAKSQCRSRQ 718

Query: 727 CPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVS 786
           CPCFAADRECDPDVCRNCWISCGDG+LG+P Q+GDNYECRNMKLLLKQQQRVLLGRSDVS
Sbjct: 719 CPCFAADRECDPDVCRNCWISCGDGTLGIPSQRGDNYECRNMKLLLKQQQRVLLGRSDVS 778

Query: 787 GWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQATYIAH 842
           GWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQ    A+
Sbjct: 779 GWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAY 834

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224094296\|ref\|XP_002310129.1\| SET domain protein [Populus trichocarpa] gi\|222853032\|gb\|EEE90579.1\| SET domain protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|296082393\|emb\|CBI21398.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225438762\|ref\|XP_002278164.1\| PREDICTED: histone-lysine N-methyltransferase CLF-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449463949\|ref\|XP_004149692.1\| PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase CLF-like [Cucumis sativus] gi\|449508283\|ref\|XP_004163272.1\| PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase CLF-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356540672\|ref\|XP_003538810.1\| PREDICTED: histone-lysine N-methyltransferase CLF-like [Glycine max]	Back alignment and taxonomy information

>gi\|374306302\|gb\|AEZ06400.1\| CLF-like protein [Aquilegia coerulea]	Back alignment and taxonomy information

>gi\|357482819\|ref\|XP_003611696.1\| Histone-lysine N-methyltransferase CLF [Medicago truncatula] gi\|355513031\|gb\|AES94654.1\| Histone-lysine N-methyltransferase CLF [Medicago truncatula]	Back alignment and taxonomy information

>gi\|34393748\|dbj\|BAC84950.1\| PHCLF1 [Petunia x hybrida]	Back alignment and taxonomy information

>gi\|350536571\|ref\|NP_001234765.1\| EZ2 protein [Solanum lycopersicum] gi\|156789074\|gb\|ABU96078.1\| EZ2 [Solanum lycopersicum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		846
TAIR\|locus:2005501		902	CLF "CURLY LEAF" [Arabidopsis	0.838	0.786	0.600	1.3e-224
TAIR\|locus:2132178		856	SWN "SWINGER" [Arabidopsis tha	0.325	0.321	0.639	8.4e-149
TAIR\|locus:2196110		689	MEA "MEDEA" [Arabidopsis thali	0.307	0.377	0.485	1e-88
UNIPROTKB\|E1BD02		751	EZH2 "Uncharacterized protein"	0.178	0.201	0.465	1.6e-46
UNIPROTKB\|E2R6Q2		751	EZH2 "Uncharacterized protein"	0.178	0.201	0.465	2.2e-45
UNIPROTKB\|E1C0W5		761	EZH2 "Uncharacterized protein"	0.178	0.198	0.465	3.3e-45
UNIPROTKB\|Q28D84		748	ezh2 "Histone-lysine N-methylt	0.178	0.201	0.465	3.4e-45
ZFIN\|ZDB-GENE-050114-1		749	ezh1 "enhancer of zeste homolo	0.204	0.230	0.440	1.1e-44
UNIPROTKB\|Q15910		746	EZH2 "Histone-lysine N-methylt	0.178	0.202	0.465	1.4e-44
UNIPROTKB\|Q4R381		746	EZH2 "Histone-lysine N-methylt	0.178	0.202	0.465	1.4e-44

TAIR\|locus:2005501 CLF "CURLY LEAF" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2168 (768.2 bits), Expect = 1.3e-224, P = 1.3e-224
 Identities = 441/734 (60%), Positives = 513/734 (69%)

Query:   110 VSSGDRDSHISQ--EDGYASTA-VYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQR 166
             + SG  +S+ ++  EDG AS+  V GSS P K  +RPIK+ D KRL PYTTW+FLDRNQR
Sbjct:    97 MKSGIDESNNNRYVEDGPASSGMVQGSSVPVKISLRPIKMPDIKRLSPYTTWVFLDRNQR 156

Query:   167 MTEDQSVMSRRRIYYDQNGGEALICSDSXXXXXXXXX-KKDFVDSEDYILRMTIKEVGLS 225
             MTEDQSV+ RRRIYYDQ GGEALICSDS          K+DF++ EDYI+RMT++++GLS
Sbjct:   157 MTEDQSVVGRRRIYYDQTGGEALICSDSEEEAIDDEEEKRDFLEPEDYIIRMTLEQLGLS 216

Query:   226 DATLESLAQCFSRSPSEVKARYEILSKEESAVGGSNNGNDEHTMNNFLVKDLEAALDSFD 285
             D+ L  LA   SRS SE+KAR+ +L KE+     S +G D    ++ L KD+E ALDSFD
Sbjct:   217 DSVLAELASFLSRSTSEIKARHGVLMKEKEV---SESG-DNQAESSLLNKDMEGALDSFD 272

Query:   286 NLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACS 345
             NLFCRRCLVFDCRLHGCSQDL+FPAEK   W    + N+ CG +CY+++LKS R      
Sbjct:   273 NLFCRRCLVFDCRLHGCSQDLIFPAEKPAPWCPPVDENLTCGANCYKTLLKSGR-----F 327

Query:   346 PLNGDIKEKFISSSDGAGAQTSSRKKFSGP--ARRVKSHQSESASSNAKNLSESSDSEVG 403
             P  G I+ K  +SSDGAG +T+  K FS     R+ K+  SESASSN K   E+SDSE G
Sbjct:   328 PGYGTIEGKTGTSSDGAGTKTTPTK-FSSKLNGRKPKTFPSESASSNEKCALETSDSENG 386

Query:   404 QRQDTAFTHHSSPSKSKLVGK-VGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGG 462
              +QDT     SS  K K  G+ VG  KR   RVAER     QK+QKK  A D DS+ASG 
Sbjct:   387 LQQDTNSDKVSSSPKVKGSGRRVGR-KRNKNRVAERVPRKTQKRQKKTEASDSDSIASGS 445

Query:   463 VLPSDMKLRSTSRKENEDANXXXXXXXXXXXXGKTRKKEMQIQDSRNLMHVRVPLGSSQE 522
               PSD K      K+NEDA             GK+RK     + S N +   VP+  S E
Sbjct:   446 CSPSDAK-----HKDNEDATSSSQKHVKSGNSGKSRKNGTPAEVSNNSVKDDVPVCQSNE 500

Query:   523 IVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARN 582
             + S   A  +++SLRK+EF+ E + +  L+  K W+ +EK LFDKGVEIFG NSCLIARN
Sbjct:   501 VASELDAPGSDESLRKEEFMGETVSRGRLATNKLWRPLEKSLFDKGVEIFGMNSCLIARN 560

Query:   583 LLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVXXXXXXXXX 642
             LL+G K+CWEVFQYMTCSENK     GD      +G SKFD NG   NN+V         
Sbjct:   561 LLSGFKSCWEVFQYMTCSENKASFFGGDGLNP--DGSSKFDINGNMVNNQVRRRSRFLRR 618

Query:   643 XXXXXXLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYC 702
                   LKYTWKSAAYHSIRKRITE+KDQPCRQ+NPC C+ ACGK+CPCLLNGTCCEKYC
Sbjct:   619 RGKVRRLKYTWKSAAYHSIRKRITEKKDQPCRQFNPCNCKIACGKECPCLLNGTCCEKYC 678

Query:   703 GCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDN 762
             GCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCW+  GDGSLGVP Q+GDN
Sbjct:   679 GCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWVIGGDGSLGVPSQRGDN 738

Query:   763 YECRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIY 822
             YECRNM        RVLLG SDVSGWGAFLKNSV KHEYLGEYTGELISH+EADKRGKIY
Sbjct:   739 YECRNMKLLLKQQQRVLLGISDVSGWGAFLKNSVSKHEYLGEYTGELISHKEADKRGKIY 798

Query:   823 DRENSSFLFNLNDQ 836
             DREN SFLFNLNDQ
Sbjct:   799 DRENCSFLFNLNDQ 812

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=RCA;IMP

GO:0016571 "histone methylation" evidence=RCA;IMP

GO:0009294 "DNA mediated transformation" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0045857 "negative regulation of molecular function, epigenetic" evidence=IMP

GO:0003727 "single-stranded RNA binding" evidence=IDA

GO:0006306 "DNA methylation" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR\|locus:2132178 SWN "SWINGER" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2196110 MEA "MEDEA" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BD02 EZH2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R6Q2 EZH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C0W5 EZH2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q28D84 ezh2 "Histone-lysine N-methyltransferase EZH2" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050114-1 ezh1 "enhancer of zeste homolog 1 (Drosophila)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q15910 EZH2 "Histone-lysine N-methyltransferase EZH2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4R381 EZH2 "Histone-lysine N-methyltransferase EZH2" [Macaca fascicularis (taxid:9541)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93831	CLF_ARATH	2, ., 1, ., 1, ., 4, 3	0.6083	0.9468	0.8880	yes	no
Q8S4P6	EZ1_MAIZE	2, ., 1, ., 1, ., 4, 3	0.5625	0.9609	0.8732	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1.43	0.946
3rd Layer	2.1.1	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	SDG916	SET domain protein (917 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	PGE901	polycomb group protein (371 aa)	•	•	0.413

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		846
smart00317		124	smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest	2e-09
pfam00856		113	pfam00856, SET, SET domain	1e-04

>gnl\|CDD\|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 777 RVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDREN--SSFLFNLN 834
           ++ + +S   GWG      + K E++GEY GE+I+  EA++R K YD +   + +LF+++
Sbjct: 2   KLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERPKAYDTDGAKAFYLFDID 61

Query: 835 D 835
            
Sbjct: 62  S 62

Putative methyl transferase, based on outlier plant homologues. Length = 124

>gnl\|CDD\|216155 pfam00856, SET, SET domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		846
KOG1079		739	consensus Transcriptional repressor EZH1 [Transcri	100.0
KOG4442		729	consensus Clathrin coat binding protein/Huntingtin	99.89
KOG1082		364	consensus Histone H3 (Lys9) methyltransferase SUV3	99.54
KOG1080		1005	consensus Histone H3 (Lys4) methyltransferase comp	99.38
KOG1083		1306	consensus Putative transcription factor ASH1/LIN-5	98.88
smart00317		116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	98.63
KOG1085		392	consensus Predicted methyltransferase (contains a	98.55
KOG1141		1262	consensus Predicted histone methyl transferase [Ch	98.21
COG2940		480	Proteins containing SET domain [General function p	97.29
KOG1079		739	consensus Transcriptional repressor EZH1 [Transcri	96.33
smart00570		51	AWS associated with SET domains. subdomain of PRES	95.79
KOG1171		406	consensus Metallothionein-like protein [Inorganic	94.14
PF00249		48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	94.05
PF03638		42	TCR: Tesmin/TSO1-like CXC domain, cysteine-rich do	93.25
cd00167		45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	93.2
smart00717		49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	93.18
smart00717		49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	93.15
PF13921		60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	92.25
PF00856		162	SET: SET domain; InterPro: IPR001214 The SET domai	91.98
cd00167		45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	90.08
KOG1141		1262	consensus Predicted histone methyl transferase [Ch	87.56

>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]	Back alignment and domain information

Probab=100.00  E-value=3.6e-110  Score=934.50  Aligned_cols=604  Identities=35%  Similarity=0.504  Sum_probs=465.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHhhhhcccccccCCCCchhhhHHhhhccccccCcCCCCCCCCCccccccC
Q 003112           45 QVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSHISQEDG  124 (846)
Q Consensus        45 qi~~eR~~~Ik~k~e~n~~~l~~~t~~l~~~~~~r~~~~~~~~~~~~~~Ls~R~~~pl~~~~g~~~~~g~~d~~~~~d~~  124 (846)
                      +|+..++.+++++...+|.+...+|+.+- ++..+....   .-+.+.++..+..-|++++|++..+..+.+...+-++ 
T Consensus        51 ~~~~~~~~~~~~~~~~~r~k~~~~~~~~~-~~~~~~~i~---~~n~~~~v~~~~~~~~~q~nfmv~~~~~~~~ip~~~~-  125 (739)
T KOG1079|consen   51 KRRLKPVRSAKEVDGDIRVKVDLDTSIFD-FPSQKSPIN---ELNAVAQVPIMYSWPPLQQNFMVEDETVLHNIPYMGD-  125 (739)
T ss_pred             hhhcccccccccccccccccccccccccc-Ccccccchh---hhcccccccccccCChhhhcceecccceecccccccc-
Confidence            37777778888888888888888888775 555544432   2224678888899999999998887777655543332 


Q ss_pred             ccccccccCCCCCccccccccccCCCCCCCcceeeeecccccccccccccccccceecCCCCeeeecCCchhhchhhhhh
Q 003112          125 YASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDSEEEVIEEEEK  204 (846)
Q Consensus       125 ~~~~~v~~~s~~~k~~v~~ikLp~v~~lPpyttWi~l~rNqrM~eDqsV~grR~IyYD~~g~EalicSdseee~~eee~k  204 (846)
                          .           |+.|++|.++.|++|++|||+||||||++||+|||+|+||| |.|+|++| ||+|||.+.+|+|
T Consensus       126 ----~-----------v~~~k~~~ieel~~y~~~v~~dr~~~~~~d~v~ve~~~a~~-Q~~~e~dg-~D~~~e~~~~~ek  188 (739)
T KOG1079|consen  126 ----E-----------VLDIKGPFIEELIKYDGKVHGDRNQRFMEDQVFVELVVALY-QYGGEHDG-SDDEEEEVLEEEK  188 (739)
T ss_pred             ----c-----------ccccccchhhhcccccceeeccccccchhhhhHHHHHHHHH-hcCCcccc-CCCccccchhhhc
Confidence                1           35599999999999999999999999999999999999999 99999999 9999996569999


Q ss_pred             cccccchhh-hhHhhhhhcCCcHHHHHHHHhhcC--CChhHHHHHHHHhhhccccC----CCCCCCCCCccccchhhhh-
Q 003112          205 KDFVDSEDY-ILRMTIKEVGLSDATLESLAQCFS--RSPSEVKARYEILSKEESAV----GGSNNGNDEHTMNNFLVKD-  276 (846)
Q Consensus       205 ~~f~e~eD~-~~~~~~~e~g~sd~vl~~l~~~~~--~~~sei~eRy~~L~~~~~~~----~~~~~~~~~~~~~~~l~K~-  276 (846)
                      ++|.|++|. ++|++.+.+|++++||.+|+++|.  ++.++|+|||.+|+....+.    ++++++     .++.|++. 
T Consensus       189 r~~~e~~~~~~~~~~~~~~~~~~~if~~~~~~f~~k~~~~~lke~~~~l~~~~~p~~~e~~~~~~i-----d~~~ae~~~  263 (739)
T KOG1079|consen  189 RDFLEGEDDDIIESINKLSFPADKIFQAISSMFPDKLTASELKERYGELTSKSLPVAEEPECTPNI-----DGSSAEPVQ  263 (739)
T ss_pred             ccccCcccchhhHhhhhhccchHHHHHHHhhhcccccchhhhhHHHhhhhhccccccCCcccccCC-----CccccChHH
Confidence            999999999 899999999999999999999999  99999999999998554443    333332     24555665 


Q ss_pred             HHHHhhhcccccccccccccccCcCCCCCccccCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCcccccc
Q 003112          277 LEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFI  356 (846)
Q Consensus       277 l~~aLdSfdnlfCRRClvfDC~lHgcsQ~Li~~~ekq~~~~~~~~d~~pCg~~Cy~~~~~~~~~~~~~~~~~~~~~~~~~  356 (846)
                      ++++|||||||||||||+|||+||| +|.++||.++...|.++..+..|||+.||.++.+.....               
T Consensus       264 r~~~l~sF~tlfCrrCl~ydC~lHg-~~~~~~pn~~~r~e~~~a~~~~pc~p~~~~~l~~~~~~~---------------  327 (739)
T KOG1079|consen  264 REQALHSFHTLFCRRCLKYDCFLHG-SQFHAFPNTKKRKEDEPALENEPCGPGCYGLLEGAKEKT---------------  327 (739)
T ss_pred             HHhhhcccccceeeeeeeeeccccC-ccccccccccccCCCCccccccCCCCchhhhhhccchhh---------------
Confidence            9999999999999999999999999 999999999999999999999999999999986543210               


Q ss_pred             cCCCCCCCccCCccccCCCcccccccccccccccccccCCCCccccccCCCccccccCCCCccccccccccccccchhHH
Q 003112          357 SSSDGAGAQTSSRKKFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGICKRKSKRVA  436 (846)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~  436 (846)
                       .+.+. .                                                       +.++..|.         
T Consensus       328 -m~~~~-~-------------------------------------------------------~~~p~~g~---------  341 (739)
T KOG1079|consen  328 -MSAVV-S-------------------------------------------------------KCPPIRGD---------  341 (739)
T ss_pred             -hhccc-c-------------------------------------------------------cCCCCcch---------
Confidence             00000 0                                                       00000000         


Q ss_pred             HHHHHHHHhhhhhhhccccccccCCCCCCccccccccccccccccCCCcccccCCCCCcccccchhhhhccccccccccC
Q 003112          437 ERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANSSSHKHAKSSSSGKTRKKEMQIQDSRNLMHVRVP  516 (846)
Q Consensus       437 ~~~~~~~~k~qk~~~~~d~~s~~~~~~~~~d~~~~s~~~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~  516 (846)
                              +|||--.++..+|         |     +.+...++.+..+......+.-.....+..    ..++.++.. 
T Consensus       342 --------~~qk~~~~~~~~s---------~-----~~~~~~e~~g~~~d~~v~~~~~~~~~~v~~----~~~~~~s~~-  394 (739)
T KOG1079|consen  342 --------IRQKLVKASSMDS---------D-----DEHVEEEDKGHDDDDGVPRGFGGSVNFVGE----DDTSTHSST-  394 (739)
T ss_pred             --------hhhhhcccccCCc---------c-----hhhccccccCcccccccccccccccccccC----Ccccccccc-
Confidence                    1222111111111         0     112223333333333332221111110000    000000000 


Q ss_pred             CCCcccccCCCCCCCCCCccchhhHhhhhhhccccCCCCCcchhhHHHHHHHHHhhCCcchHHHHHhhCCCCcHHHHHHH
Q 003112          517 LGSSQEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQY  596 (846)
Q Consensus       517 ~~~~~~~~~~~~~~~~~d~~~~~e~v~~~~~~~e~~~~~~Wt~~E~~L~~k~~eifg~NsClIAr~Ll~g~KtC~EV~~~  596 (846)
                          .-++.+ +.                  ..+-....+|+++|+.||++|+.+||.|+|+|||+|  ++|||++||+|
T Consensus       395 ----~~~c~~-~~------------------~~~~~~~~ew~~~ek~~fr~~~~~~~~n~c~Iar~l--~~ktC~~v~~~  449 (739)
T KOG1079|consen  395 ----NSICQN-PV------------------HGKKDTNVEWNGAEKVLFRVGSTLYGTNRCSIARNL--LTKTCRQVYEY  449 (739)
T ss_pred             ----cccccC-cc------------------cccCCcccccchhhhHHHHhccccccchhhHHHHHh--cchHHHHHHHH
Confidence                000000 00                  001012568999999999999999999999999999  45999999999


Q ss_pred             HHhhhhccccccCccchhhcccCCccCCCCCCCCccccchhhHHHhhcccccccccccccchhhHHHhhhccCCCCCCCC
Q 003112          597 MTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQY  676 (846)
Q Consensus       597 m~~~~~~~~~~~~~~~~s~~e~~~k~~~~~~~~~~~~~~rsr~~rrr~r~rklk~~wks~~~~~~~kri~~~kd~~~~~y  676 (846)
                      ++.+........+.                .....+++.|.+.+|+.++.|++.+.|+++.++.+|            .|
T Consensus       450 ~~~e~~~~~~~~~~----------------~~~~~~~~~r~~~~r~~g~~r~k~q~kk~~~~~~v~------------~~  501 (739)
T KOG1079|consen  450 EQKEVLQGLYFDGR----------------FRVELPGPKRARKLRLWGRHRRKIQNKKDSRHTVVW------------NY  501 (739)
T ss_pred             hhcchhhceecccc----------------cccccCcchhhHHHHhhhhHHHhhhcccccCCceee------------ec
Confidence            99876543333211                012345677889999999999999999988877655            37


Q ss_pred             CCCCCCCCC--CCCCcccCCCcccccCCCCCccccccCCCcccCCCCccCCCCccccccCccCCCCCcCCcccCCCCCCC
Q 003112          677 NPCGCQTAC--GKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLG  754 (846)
Q Consensus       677 ~PC~h~gpC--~~~C~C~~~g~~CEk~C~C~~~C~nRF~GC~C~~~qC~t~~CpC~~a~rECDPdlC~~C~~sCgd~~~~  754 (846)
                      +||+|+++|  +..|+|+.+++||||||+|+++|.|||+||+| ++||++++||||+|+|||||++|..||+        
T Consensus       502 qpC~hp~~c~c~~~C~C~~n~~~CEk~C~C~~dC~nrF~GC~C-k~QC~tkqCpC~~A~rECdPd~Cl~cg~--------  572 (739)
T KOG1079|consen  502 QPCDHPGPCNCGVGCPCIDNETFCEKFCYCSPDCRNRFPGCRC-KAQCNTKQCPCYLAVRECDPDVCLMCGN--------  572 (739)
T ss_pred             CcccCCCCCCCCCCCcccccCcchhhcccCCHHHHhcCCCCCc-ccccccCcCchhhhccccCchHHhccCc--------
Confidence            777777655  68999999999999999999999999999999 8999999999999999999999999985        


Q ss_pred             CCCCCCCcccccchHHhhcccceEEEEEecccCceeeeccccCCCceeEeeeeeeeCHHHHHHHhhhcccCCCeEEEEcC
Q 003112          755 VPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLN  834 (846)
Q Consensus       755 ~P~~~~~~~~C~Nr~lQrg~~kkL~V~kS~ikGwGLFA~EdIkKGeFI~EYvGEVIS~eEAdRRgk~Yd~~~~sYLF~Ln  834 (846)
                      .+..+++...|+|+.+|+++++++++++|.+.|||||+++.+.|++||+||+||+||++||+|||++||.++++|||+|+
T Consensus       573 ~~~~d~~~~~C~N~~l~~~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~~cSflFnln  652 (739)
T KOG1079|consen  573 VDHFDSSKISCKNTNLQRGEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRYMCSFLFNLN  652 (739)
T ss_pred             ccccccCccccccchhhhhhhcceeechhhccccceeeccccCCCceeeeecceeccchhhhhcccccccccceeeeecc
Confidence            34567778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccEEccccCCC
Q 003112          835 DQATYIAHLYFD  846 (846)
Q Consensus       835 ~~~VIDATrKGN  846 (846)
                      ++|||||+++||
T Consensus       653 ~dyviDs~rkGn  664 (739)
T KOG1079|consen  653 NDYVIDSTRKGN  664 (739)
T ss_pred             ccceEeeeeecc
Confidence            999999999998

>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]	Back alignment and domain information

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]	Back alignment and domain information

>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]	Back alignment and domain information

>COG2940 Proteins containing SET domain [General function prediction only]	Back alignment and domain information

>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]	Back alignment and domain information

>smart00570 AWS associated with SET domains	Back alignment and domain information

>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins	Back alignment and domain information

>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C	Back alignment and domain information

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains	Back alignment and domain information

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	Back alignment and domain information

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	Back alignment and domain information

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A	Back alignment and domain information

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Back alignment and domain information

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains	Back alignment and domain information

>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		846
2r3a_A		300	Methyltransferase Domain Of Human Suppressor Of Var		8e-05
2o8j_A		281	Human Euchromatic Histone Methyltransferase 2 Lengt		3e-04
3k5k_A		283	Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin		3e-04

>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300

Back alignment and structure

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 779 LLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLN 834
           +   S+  GWG      + +  ++ EY GE+I+  EA++RG+ YD +  ++LF+L+
Sbjct: 144 IFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFYDNKGITYLFDLD 199

PyMOL of 2r3a

>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281

Back alignment and structure

>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		846
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	1e-20
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	1e-16
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	1e-15
2w5y_A		192	Histone-lysine N-methyltransferase HRX; transcript	2e-15
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	6e-15
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	2e-14
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	2e-13
2r3a_A		300	Histone-lysine N-methyltransferase SUV39H2; histon	3e-13
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	1e-12
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	5e-12
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	2e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	6e-09
1n7d_A		699	LDL receptor, low-density lipoprotein receptor; fa	1e-04
2f83_A		625	Coagulation factor XI; protease, apple domain, hyd	8e-04

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290	Back alignment and structure

 Score = 92.2 bits (229), Expect = 1e-20
 Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 25/146 (17%)

Query: 705 PKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRN--------------CWISCGD 750
               +  F GC C K+ C    C C       D + C                C + C  
Sbjct: 52  IDPTQITFPGCICVKTPCLPGTCSCLRHGENYDDNSCLRDIGSGGKYAEPVFECNVLCRC 111

Query: 751 GSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELI 810
                         CRN  +    Q    + ++   GWG      + K  ++ EY GE++
Sbjct: 112 SD-----------HCRNRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVL 160

Query: 811 SHREADKRGKIYDRENSSFLFNLNDQ 836
              E  +R  +  + +S+++  + + 
Sbjct: 161 GFSEVQRRIHLQTKSDSNYIIAIREH 186

PyMOL of 3bo5

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261	Back alignment and structure

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299	Back alignment and structure

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222	Back alignment and structure

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166	Back alignment and structure

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302	Back alignment and structure

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119	Back alignment and structure

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699	Back alignment and structure

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		846
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	99.91
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	99.86
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	99.84
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	99.84
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	99.83
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	99.83
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	99.82
2r3a_A		300	Histone-lysine N-methyltransferase SUV39H2; histon	99.79
2w5y_A		192	Histone-lysine N-methyltransferase HRX; transcript	99.6
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	99.51
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	99.3
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	99.12
2qpw_A		149	PR domain zinc finger protein 2; methyltransferase	99.11
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	99.0
3ep0_A		170	PR domain zinc finger protein 12; PR domain-contai	98.69
3dal_A		196	PR domain zinc finger protein 1; methyltransferase	98.43
3db5_A		151	PR domain zinc finger protein 4; methyltransferase	98.4
3s8p_A		273	Histone-lysine N-methyltransferase SUV420H1; SET d	98.2
3rq4_A		247	Histone-lysine N-methyltransferase SUV420H2; suppr	97.65
3ray_A		237	PR domain-containing protein 11; structural genomi	97.64
3ihx_A		152	PR domain zinc finger protein 10; PRDM10, methyltr	97.29
2llk_A		73	Cyclin-D-binding MYB-like transcription factor 1;	96.16
2cqr_A		73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	95.54
2lr8_A		70	CAsp8-associated protein 2; structural genomics, n	94.1
2yum_A		75	ZZZ3 protein, zinc finger ZZ-type-containing prote	94.44
1x41_A		60	Transcriptional adaptor 2-like, isoform B; transcr	94.18
2yqk_A		63	Arginine-glutamic acid dipeptide repeats protein;	93.85
2eqr_A		61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	93.85
2crg_A		70	Metastasis associated protein MTA3; transcription	93.85
3sjm_A		64	Telomeric repeat-binding factor 2; human telomeric	93.64
2d9a_A		60	B-MYB, MYB-related protein B; DNA binding, structu	93.49
1guu_A		52	C-MYB, MYB proto-oncogene protein; transcription,	93.41
2din_A		66	Cell division cycle 5-like protein; MYB_DNA-bindin	93.36
2elk_A		58	SPCC24B10.08C protein; hypothetical protein, struc	93.23
1ug2_A		95	2610100B20RIK gene product; hypothetical protein,	92.82
2cu7_A		72	KIAA1915 protein; nuclear protein, SANT domain, DN	92.66
1w0t_A		53	Telomeric repeat binding factor 1; telomere, DNA-b	92.45
2cqq_A		72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	91.66
2iw5_B		235	Protein corest, REST corepressor 1; oxidoreductase	91.66
2cjj_A		93	Radialis; plant development, DNA-binding protein,	91.21
1gvd_A		52	MYB proto-oncogene protein; transcription, transcr	91.05
1gv2_A		105	C-MYB, MYB proto-oncogene protein; transcription,	90.15
4a69_C		94	Nuclear receptor corepressor 2; transcription, hyd	89.82
2k9n_A		107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	89.7
2yus_A		79	SWI/SNF-related matrix-associated actin- dependent	89.56
3osg_A		126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	89.53
2dim_A		70	Cell division cycle 5-like protein; MYB_DNA-bindin	89.12
1ity_A		69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	88.89
1h8a_C		128	AMV V-MYB, MYB transforming protein; transcription	87.3
2k9n_A		107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	85.57
1gv2_A		105	C-MYB, MYB proto-oncogene protein; transcription,	85.56
2ltp_A		89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	85.38
2xag_B		482	REST corepressor 1; amine oxidase, chromatin regul	82.93
3osg_A		126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	82.03
3zqc_A		131	MYB3; transcription-DNA complex, DNA-binding prote	81.69
2cu7_A		72	KIAA1915 protein; nuclear protein, SANT domain, DN	81.38
1h8a_C		128	AMV V-MYB, MYB transforming protein; transcription	81.24
1h89_C		159	C-MYB, MYB proto-oncogene protein; transcription/D	81.03
2yus_A		79	SWI/SNF-related matrix-associated actin- dependent	80.49

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}	Back alignment and structure

Probab=99.91  E-value=9.5e-25  Score=231.07  Aligned_cols=147  Identities=20%  Similarity=0.429  Sum_probs=124.2

Q ss_pred             CCCCCCCCCCCCCCCCCCcccCCCcccccCCCCCccccccCCCcccCCCCccCCCCccccccCccCCCCCcC--------
Q 003112          672 PCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRN--------  743 (846)
Q Consensus       672 ~~~~y~PC~h~gpC~~~C~C~~~g~~CEk~C~C~~~C~nRF~GC~C~~~qC~t~~CpC~~a~rECDPdlC~~--------  743 (846)
                      +.+.|+|..+.++..   ..             + ...++|+||.|..+.|.+..|+|+..+++|+++.|..        
T Consensus        36 ~~f~Y~~~~~~~~~~---~~-------------~-~~~~~~~gC~C~~~~C~~~~C~C~~~~~~y~~~~~l~~~~~~~~~   98 (290)
T 3bo5_A           36 APFQYTPDHVVGPGA---DI-------------D-PTQITFPGCICVKTPCLPGTCSCLRHGENYDDNSCLRDIGSGGKY   98 (290)
T ss_dssp             CCCEECSSCEECTTC---SS-------------C-TTSCCCCCCCCCSSCCCTTTCGGGTTSCSBCTTSCBCC-----CC
T ss_pred             CCcEEeeceecCCCC---cC-------------C-cccccCCCCCCCCCCcCCCCCcchhhcCccCcccccccccccccc
Confidence            568899988765442   11             1 1356799999987899999999999999999988853        


Q ss_pred             ------CcccCCCCCCCCCCCCCCcccccchHHhhcccceEEEEEecccCceeeeccccCCCceeEeeeeeeeCHHHHHH
Q 003112          744 ------CWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADK  817 (846)
Q Consensus       744 ------C~~sCgd~~~~~P~~~~~~~~C~Nr~lQrg~~kkL~V~kS~ikGwGLFA~EdIkKGeFI~EYvGEVIS~eEAdR  817 (846)
                            |+..|++           +..|+||++|+|...+|+|+++..+||||||.++|++|+||+||+||||+.+|+++
T Consensus        99 ~~~~~EC~~~C~C-----------~~~C~Nr~~q~g~~~~l~V~~s~~~G~Gl~A~~~I~~G~~I~EY~Gevi~~~e~~~  167 (290)
T 3bo5_A           99 AEPVFECNVLCRC-----------SDHCRNRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQR  167 (290)
T ss_dssp             CCCEECCCTTCCS-----------CTTCTTCCGGGCCCSCEEEEECSSSSEEEEESSCBCTTCEEEECCEEEECHHHHHH
T ss_pred             CCceEeCCCCCCC-----------CCCCCCeEcccCCcccEEEEEcCCCcceEeECCccCCCCEEEEEeeEEeCHHHHHH
Confidence                  3333433           24999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcccCCCeEEEEcCC--------ccEEccccCCC
Q 003112          818 RGKIYDRENSSFLFNLND--------QATYIAHLYFD  846 (846)
Q Consensus       818 Rgk~Yd~~~~sYLF~Ln~--------~~VIDATrKGN  846 (846)
                      |...|+....+|+|.|++        .++|||+++||
T Consensus       168 R~~~~~~~~~~Y~~~l~~~~~~~~~~~~~IDa~~~GN  204 (290)
T 3bo5_A          168 RIHLQTKSDSNYIIAIREHVYNGQVMETFVDPTYIGN  204 (290)
T ss_dssp             HHTTCCSSCCCCCEEEEECC-----EEEEEEEEEEEC
T ss_pred             HHHhhcccCCcceeeecccccCCccceeEEeeeecCC
Confidence            999888778899999853        37999999998

PyMOL of 3bo5

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}	Back alignment and structure

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*	Back alignment and structure

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*	Back alignment and structure

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}	Back alignment and structure

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A	Back alignment and structure

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}	Back alignment and structure

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}	Back alignment and structure

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}	Back alignment and structure

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}	Back alignment and structure

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}	Back alignment and structure

>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}	Back alignment and structure

>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}	Back alignment and structure

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}	Back alignment and structure

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3	Back alignment and structure

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}	Back alignment and structure

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1	Back alignment and structure

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3	Back alignment and structure

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A	Back alignment and structure

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A	Back alignment and structure

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}	Back alignment and structure

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3	Back alignment and structure

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3	Back alignment and structure

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A	Back alignment and structure

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3	Back alignment and structure

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*	Back alignment and structure

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3	Back alignment and structure

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A	Back alignment and structure

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A	Back alignment and structure

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A	Back alignment and structure

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A	Back alignment and structure

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}	Back alignment and structure

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A	Back alignment and structure

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A	Back alignment and structure

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3	Back alignment and structure

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A	Back alignment and structure

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A	Back alignment and structure

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}	Back alignment and structure

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*	Back alignment and structure

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A	Back alignment and structure

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}	Back alignment and structure

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3	Back alignment and structure

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3	Back alignment and structure

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C	Back alignment and structure

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		846
d1ml9a_		284	b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T	2e-17
d1mvha_		269	b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S	3e-14
d2f69a2		171	b.85.7.1 (A:194-364) Histone H3 K4-specific methyl	1e-08

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284	Back information, alignment and structure


class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

 Score = 81.5 bits (200), Expect = 2e-17
 Identities = 31/187 (16%), Positives = 55/187 (29%), Gaps = 28/187 (14%)

Query: 658 YHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHC 717
           +  I   I  +      Q    GC         C  +  C    C C             
Sbjct: 19  FRFIDHSIIGKNVPVADQSFRVGC--------SCASDEECMYSTCQCLDEMAPDSDEEAD 70

Query: 718 AKSQCRSRQCPCFAADRECDPDVCRN-------CWISCGDGSLGVPDQKGDNYECRNMKL 770
             ++ +        A +    D           C   C               +C N  +
Sbjct: 71  PYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSK-----------DCPNRVV 119

Query: 771 LLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIY--DRENSS 828
              +   + + R+   GWG     ++ + +++  Y GE+I+  EAD+R       R    
Sbjct: 120 ERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDV 179

Query: 829 FLFNLND 835
           +LF L+ 
Sbjct: 180 YLFALDK 186

PyMOL of d1ml9a_

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269	Back information, alignment and structure

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		846
d1mvha_		269	SET domain of Clr4 {Fission yeast (Schizosaccharom	99.86
d1ml9a_		284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	99.8
d2f69a2		171	Histone H3 K4-specific methyltransferase SET7/9 ca	98.94
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	98.24
d1ug2a_		95	2610100b20rik gene product {Mouse (Mus musculus) [	96.11
d2cqra1		60	DnaJ homolog subfamily C member 1 {Human (Homo sap	95.72
d1guua_		50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	95.35
d1gv2a2		47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	95.01
d2crga1		57	Metastasis associated protein MTA3 {Mouse (Mus mus	94.98
d1w0ua_		55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	94.8
d2iw5b1		65	REST corepressor 1, CoREST {Human (Homo sapiens) [	93.67
d2cu7a1		65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	93.13
d2cjja1		63	Radialis {Garden snapdragon (Antirrhinum majus) [T	93.05
d1gvda_		52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	92.84
d1xc5a1		68	Nuclear receptor corepressor 2 {Human (Homo sapien	92.07
d1x41a1		47	Transcriptional adaptor 2-like, TADA2L, isoform b	91.49
d1w0ta_		52	DNA-binding domain of human telomeric protein, hTR	90.73
d2cu7a1		65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	89.33
d1igna1		86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	88.44
d2iw5b1		65	REST corepressor 1, CoREST {Human (Homo sapiens) [	87.93
d2cqqa1		59	DnaJ homolog subfamily C member 1 {Human (Homo sap	87.58
d1xc5a1		68	Nuclear receptor corepressor 2 {Human (Homo sapien	83.26
d1x41a1		47	Transcriptional adaptor 2-like, TADA2L, isoform b	82.33

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.86  E-value=4.8e-22  Score=205.88  Aligned_cols=83  Identities=29%  Similarity=0.444  Sum_probs=80.0

Q ss_pred             cccchHHhhcccceEEEEEecccCceeeeccccCCCceeEeeeeeeeCHHHHHHHhhhcccCCCeEEEEcC-----CccE
Q 003112          764 ECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLN-----DQAT  838 (846)
Q Consensus       764 ~C~Nr~lQrg~~kkL~V~kS~ikGwGLFA~EdIkKGeFI~EYvGEVIS~eEAdRRgk~Yd~~~~sYLF~Ln-----~~~V  838 (846)
                      .|.||++|+|...+|+|++|..+||||||.++|++|+||+||+||||+.+|+++|.+.|+..+.+|+|.|.     ..++
T Consensus       124 ~C~Nr~~q~g~~~~leV~~t~~~G~GvfA~~~I~kGt~I~eY~Gevi~~~e~~~R~~~y~~~~~~~~~~l~~~~~~~~~~  203 (269)
T d1mvha_         124 ECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDASEYT  203 (269)
T ss_dssp             TCTTCTGGGCCCSCEEEEECSSSSEEEEESSCBCTTCEEEECCCEEEEHHHHHHHHTTCCSCSCCCEEEECSSCSSSCEE
T ss_pred             CCCCeecCCCCccCEEEEEcCCCCeEEEeCcccCCCceEEEecceEEcHHHHHHHHHhHhhcCCcchhheecccccccce
Confidence            79999999999999999999999999999999999999999999999999999999999999999999985     4799


Q ss_pred             EccccCCC
Q 003112          839 YIAHLYFD  846 (846)
Q Consensus       839 IDATrKGN  846 (846)
                      |||++.||
T Consensus       204 iDa~~~GN  211 (269)
T d1mvha_         204 VDAQNYGD  211 (269)
T ss_dssp             EECSSEEC
T ss_pred             eeeeecCc
Confidence            99999998

PyMOL of d1mvha_

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	Back information, alignment and structure

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}	Back information, alignment and structure

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure