Citrus Sinensis ID: 003136

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-----

MSFQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSSDNAPESRTEEGESIGLAAIS

cccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHccccHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccccccccccccccccccc

ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccccccccccccccccccccEEEccHHHHHHHHHHHHHHHHHHcccccccccHHHHcHccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHcHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccccHHHHHHHHHcHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHcccHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHcHHHHcccccccccccccccccccccccccHHccc

MSFQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTkvahstgdgstvnnadsgsgkvdsrKMRILSFLNDDISGAILDISFQRLVkrekapgtqgplelwsddfegkgdFSQYRSRLLELVKFVasnkplvagvKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVfdgsnqfggansEVQLSLSRIFEGLLRQLLSlkwtepplvVALGHYLDALgpflkyypdaVGGVISKLFELLTslpfvfkdpstnsarHARLQICTSFIRIAktsdksilpHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNnylseplglvrlcsdtSFMWSLFHTVTFFERALKRSGIRKanlnlqsssaensavmhpmashlswmlpPLLKLLRAIHSiwspsisqllPGEIKAAMTMSDAEQfsllgegnpkfsrgavafadgsqldtskegygepnesdIRNWLKgvrdsgynvlglsatigdpffksldSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMAssglnngippieqsghfyrvdvlslkdldafasNSMVGFLLKHKDLALPALQISLEaftwtdgeavTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMcdrdpaprqvllslpcitpqdLLAFEDALtktaspreqKQHMRSLLVLGTGNNLKALAAQksvnvitnvstrprssdnapesrteegesiglaais

MSFQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVahstgdgstvnnadsgsgkvdSRKMRILSflnddisgaILDISFQRLVKREkapgtqgplelwsddfegKGDFSQYRSRLLELVKFVasnkplvagvkvSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIaktsdksilpHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSqldtskegygepnesDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNNLKALaaqksvnvitnvstrprssdnapesrteegesiglaais

MSFQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMlppllkllRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSSDNAPESRTEEGESIGLAAIS

***QMLGYFQHFKIALHFQSLLFWLALMRDLM******************************RILSFLNDDISGAILDISFQRLVKR*******GPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIR*******************MASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKA***********************************************IRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDAL***************LLVLGTGNNLKALAAQKSVNVI******************************

*SFQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTK*A*************************ILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLL***MPAQDLAVMESMQSALENVVSAVFDGSN***************IFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLP*************ARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALK*******************AVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGN***************************ESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHE********EVMEEKLLRDLTREICSLLSTMA************************************VGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFE**************HMRSLLVLGTG*******************************************I*

MSFQMLGYFQHFKIALHFQSLLFWLALMRDLMSKT********GSTVN*********DSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTK**********MRSLLVLGTGNNLKALAAQKSVNVITNV***************************

*SFQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKV*H***********************RILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMASSG***************************FASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVS**************************

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		845	2.2.26 [Sep-21-2011]
Q0WP44		1202	Protein HASTY 1 OS=Arabid	yes	no	0.975	0.685	0.671	0.0
Q54PQ8		1135	Exportin-5 OS=Dictyosteli	yes	no	0.802	0.597	0.220	3e-25
Q9HAV4		1204	Exportin-5 OS=Homo sapien	yes	no	0.764	0.536	0.213	3e-18
Q924C1		1204	Exportin-5 OS=Mus musculu	yes	no	0.773	0.543	0.210	9e-15

>sp\|Q0WP44\|HASTY_ARATH Protein HASTY 1 OS=Arabidopsis thaliana GN=HST1 PE=1 SV=1	Back alignment and function desciption

 Score = 1146 bits (2965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/843 (67%), Positives = 677/843 (80%), Gaps = 19/843 (2%)

Query: 4    QMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMR 63
            QMLG+FQHFK+ LHF++LLFWL+LMRDL+ K K A     G +    D  S +VDS K +
Sbjct: 351  QMLGFFQHFKLGLHFEALLFWLSLMRDLLPKPKAATYPSGGGSSTGGDDSSSQVDSEKKK 410

Query: 64   ILSFLNDDISGAILDISFQRLVKREKAPG----TQGPLELWSDDFEGKGDFSQYRSRLLE 119
             LS +NDDIS AILD+SFQR++K+EK P     + GPLELWSD+FEGKGDF  YRS+LLE
Sbjct: 411  TLSLINDDISSAILDVSFQRMLKKEKVPTGIALSLGPLELWSDEFEGKGDFGPYRSKLLE 470

Query: 120  LVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSN 179
            L+K  AS+KPL++  K+SERV+ +I  LL S  P Q +AVM+S Q AL+ +V+ +FDGSN
Sbjct: 471  LIKLTASHKPLISSTKISERVITLIKHLLASPAPLQHVAVMDSQQLALDCIVATLFDGSN 530

Query: 180  QFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVI 239
            +F G +SEV  +L  IFEGLL+QLLSLKW EP L+    HYLDA+GPFLKY+PDAVG +I
Sbjct: 531  EFAGGSSEVHYALRGIFEGLLQQLLSLKWNEPELMKVHVHYLDAMGPFLKYFPDAVGSLI 590

Query: 240  SKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQR 299
            +KLFELLTSLP V KDP+T+++R ARLQICTSFIRIAK ++KS+LPHMK IADTM YL +
Sbjct: 591  NKLFELLTSLPHVVKDPATSTSRAARLQICTSFIRIAKAAEKSVLPHMKGIADTMGYLAK 650

Query: 300  EGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLV 359
            EG LLRGEHN+LGEAFLVMAS+AG QQQQEVLAWLLEPLSQQW+Q EWQNNYLS+P+GLV
Sbjct: 651  EGTLLRGEHNILGEAFLVMASSAGAQQQQEVLAWLLEPLSQQWIQPEWQNNYLSDPMGLV 710

Query: 360  RLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPL 419
            RLCS+TSFMWS++HTVTFFE+ALKRSG RK+NLN  S++   S   HPMA HLSWMLPPL
Sbjct: 711  RLCSNTSFMWSIYHTVTFFEKALKRSGYRKSNLNTTSATTPAS---HPMAHHLSWMLPPL 767

Query: 420  LKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDT 479
            LKLLR +HS+WSPS+ Q LP E++AAMTM+DAE++SLLGE NPK S+G   +ADGS  + 
Sbjct: 768  LKLLRVLHSLWSPSVFQTLPPEMRAAMTMTDAERYSLLGEANPKLSKGVSVYADGS-FEG 826

Query: 480  SKEGYGEPNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEF 539
            +KEG  E +ESDIRNWLKG+RD GYNVLGLS TIG+ FFK LD+  V +ALMEN+QSMEF
Sbjct: 827  TKEGQAEASESDIRNWLKGIRDCGYNVLGLSTTIGETFFKCLDANYVAMALMENLQSMEF 886

Query: 540  RHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHE-------- 591
            RHIR  +H+ + ++VK CP DMWE WL  LL+PLFIHCQQ LSS+W  L+ E        
Sbjct: 887  RHIRLFIHTFITYIVKSCPADMWESWLGVLLHPLFIHCQQALSSAWPGLLQEGRAKVPDL 946

Query: 592  ---VAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLK 648
                +GSD+K+EVMEEKLLRDLTREI +L STMAS GLN G+P +E SGH  RVD+ +L 
Sbjct: 947  FGIQSGSDMKLEVMEEKLLRDLTREIATLFSTMASPGLNTGVPVLEHSGHVGRVDMSTLT 1006

Query: 649  DLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNI 708
            DL AF SNSMVGFLL HK +ALPALQI LE FTWTDGEA TKV  FC  VVLLA  +NN+
Sbjct: 1007 DLHAFRSNSMVGFLLNHKSVALPALQICLETFTWTDGEATTKVCYFCGVVVLLAKLTNNV 1066

Query: 709  ELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITP 768
            ELR+FVSKD+FSA+IRGL +ESNA+ S DLV +CREIFIY+ DRDPAPRQVLLSLPC+TP
Sbjct: 1067 ELREFVSKDMFSAVIRGLGMESNAINSPDLVNICREIFIYLSDRDPAPRQVLLSLPCLTP 1126

Query: 769  QDLLAFEDALTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSSDNA 828
             DL AFE+A  KT+SP+EQKQ MRSLL+LGTGNNLKALAAQKS NVITNV+ R R   +A
Sbjct: 1127 NDLHAFEEATAKTSSPKEQKQLMRSLLLLGTGNNLKALAAQKSQNVITNVTARTRLPASA 1186

Query: 829  PES 831
            PE+
Sbjct: 1187 PET 1189

Nucleocytoplasmic transporter involved in the nuclear export of microRNAs (miRNAs). Required for several miRNAs accumulation. Specifically required for miR156 accumulation which targets SPL3, SPL4 and SPL5 transcription factors. Involved in plant development through its role in miRNAs processing. Required for vegetative phase change and vegetative to reproductive phase transition. Functionally dependent on RAN1 binding. Does not seem to be involved in small interfering RNAs (siRNAs) processing.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q54PQ8\|XPO5_DICDI Exportin-5 OS=Dictyostelium discoideum GN=xpo5 PE=3 SV=1	Back alignment and function description

>sp\|Q9HAV4\|XPO5_HUMAN Exportin-5 OS=Homo sapiens GN=XPO5 PE=1 SV=1	Back alignment and function description

>sp\|Q924C1\|XPO5_MOUSE Exportin-5 OS=Mus musculus GN=Xpo5 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		845
225451181		1206	PREDICTED: protein HASTY 1 [Vitis vinife	0.994	0.696	0.744	0.0
255542432		1430	conserved hypothetical protein [Ricinus	0.952	0.562	0.743	0.0
356504082		1206	PREDICTED: protein HASTY 1-like [Glycine	0.989	0.693	0.691	0.0
356573052		1206	PREDICTED: protein HASTY 1-like [Glycine	0.989	0.693	0.688	0.0
449442883		1185	PREDICTED: protein HASTY 1-like [Cucumis	0.970	0.691	0.668	0.0
79393760		1202	protein HASTY [Arabidopsis thaliana] gi\|	0.975	0.685	0.671	0.0
28629393		1202	HASTY [Arabidopsis thaliana]	0.975	0.685	0.670	0.0
357512151		1191	Exportin-5 [Medicago truncatula] gi\|3555	0.976	0.692	0.656	0.0
297833212		1202	hypothetical protein ARALYDRAFT_477786 [	0.975	0.685	0.670	0.0
307136050		1143	hypothetical protein [Cucumis melo subsp	0.958	0.708	0.669	0.0

>gi\|225451181\|ref\|XP_002272927.1\| PREDICTED: protein HASTY 1 [Vitis vinifera] gi\|298204940\|emb\|CBI34247.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1309 bits (3388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/857 (74%), Positives = 729/857 (85%), Gaps = 17/857 (1%)

Query: 4    QMLGYFQHFKIALHFQSLLFWLALMRDLMSKTK-VAHSTGDGSTVNNADSGSGKVDSRKM 62
            QMLGYFQH K+ LH+QSL FWLALMRDL+SK K VA + GDGS  NN  SGSG+VD+ K 
Sbjct: 350  QMLGYFQHVKLTLHYQSLPFWLALMRDLVSKPKIVAPAAGDGSVDNNPGSGSGQVDNEKR 409

Query: 63   RILSFLNDDISGAILDISFQRLVKREKA-PGTQ---GPLELWSDDFEGKGDFSQYRSRLL 118
            ++ SF+NDDI G +LD+ FQRL+KREK  PGT    GPLELWSDDFEGKG+FSQYRSRLL
Sbjct: 410  KLQSFVNDDICGTMLDVCFQRLLKREKVLPGTSFSLGPLELWSDDFEGKGEFSQYRSRLL 469

Query: 119  ELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGS 178
            EL +FVAS+KPL+A +KVSER+  II SLL+S M AQD+AVMESM  ALEN+ S VFDGS
Sbjct: 470  ELARFVASDKPLIAAIKVSERIATIIKSLLLSPMSAQDIAVMESMPMALENIASVVFDGS 529

Query: 179  NQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGV 238
            N++ G +SE QL+L RIFEGLL+QLLSLKWTEP LV  LGHYLDALG FLKY+P+ VG V
Sbjct: 530  NEYLGGSSETQLALCRIFEGLLQQLLSLKWTEPALVEVLGHYLDALGLFLKYFPEGVGSV 589

Query: 239  ISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQ 298
            I+KLFELLTSLPFV KDP T+SAR+ARLQICTSF+R+AK+++KS+LPHMK IADTM YLQ
Sbjct: 590  INKLFELLTSLPFVVKDPKTSSARYARLQICTSFVRLAKSAEKSLLPHMKGIADTMDYLQ 649

Query: 299  REGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGL 358
            REG LLR EHN+LGEAFLVMAS AG+QQQQEVLAWLLEPLS+QW+Q+EWQ  YLS+P GL
Sbjct: 650  REGCLLRAEHNILGEAFLVMASVAGVQQQQEVLAWLLEPLSKQWIQVEWQQTYLSDPTGL 709

Query: 359  VRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPP 418
            +RLCS+TSFMWS+FHTVTFFERALKRSGIRK +LN Q+SS  +   +HPM+SHLSWMLPP
Sbjct: 710  IRLCSETSFMWSIFHTVTFFERALKRSGIRKGSLNSQNSSTASFTPLHPMSSHLSWMLPP 769

Query: 419  LLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLD 478
            LLKLLRAIHS+WSP +SQ LPGEIKAAM MS+ E+ SLLGE NPK S+    F DGSQ+D
Sbjct: 770  LLKLLRAIHSLWSPPVSQSLPGEIKAAMIMSEVERTSLLGEVNPKLSKSVAGFIDGSQID 829

Query: 479  TSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSME 538
            T+KE Y E +E+DIRNWLKG+RDSGYNVLGLS TIGD FFK LD  S+ +ALMENIQSME
Sbjct: 830  TNKE-YAESHETDIRNWLKGIRDSGYNVLGLSTTIGDSFFKCLDISSLAIALMENIQSME 888

Query: 539  FRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHE------- 591
            FRHIRQL+HSVLI +VKFCP D+WE WLEKLL+PLFIH QQ LS SWS L+ E       
Sbjct: 889  FRHIRQLIHSVLIPLVKFCPSDLWEEWLEKLLHPLFIHSQQALSCSWSCLLREGRARVPD 948

Query: 592  ----VAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSL 647
                +AGSDLKVEVMEEKLLRDLTREIC+LLS +AS GLN G+P +EQSGH  R D+ SL
Sbjct: 949  VHAILAGSDLKVEVMEEKLLRDLTREICALLSVLASPGLNTGLPSLEQSGHVSRGDMSSL 1008

Query: 648  KDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNN 707
            KDLDAFAS SMVGFLLKHK LALP  QISLEAFTWTDGEAVTKVSSFC  VVLLAI S+N
Sbjct: 1009 KDLDAFASTSMVGFLLKHKGLALPLSQISLEAFTWTDGEAVTKVSSFCGVVVLLAISSSN 1068

Query: 708  IELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCIT 767
            +ELR+FV+KDLF AII+GLALESNA +SADLVGLCREIF+Y+ DRDP+PRQVLLSLPCIT
Sbjct: 1069 VELREFVAKDLFYAIIQGLALESNAFVSADLVGLCREIFVYLSDRDPSPRQVLLSLPCIT 1128

Query: 768  PQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSSDN 827
            P DLLAFE+AL KT+SP+EQKQHM+SLL+L TGN LKALAAQKS+NVITNVSTRPRS  N
Sbjct: 1129 PYDLLAFEEALAKTSSPKEQKQHMKSLLLLATGNKLKALAAQKSMNVITNVSTRPRSMVN 1188

Query: 828  APESRTEEGESIGLAAI 844
            A E R EEG+S+GLAAI
Sbjct: 1189 ASEPRIEEGDSVGLAAI 1205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255542432\|ref\|XP_002512279.1\| conserved hypothetical protein [Ricinus communis] gi\|223548240\|gb\|EEF49731.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356504082\|ref\|XP_003520828.1\| PREDICTED: protein HASTY 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356573052\|ref\|XP_003554679.1\| PREDICTED: protein HASTY 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|449442883\|ref\|XP_004139210.1\| PREDICTED: protein HASTY 1-like [Cucumis sativus] gi\|449482912\|ref\|XP_004156441.1\| PREDICTED: protein HASTY 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|79393760\|ref\|NP_187155.2\| protein HASTY [Arabidopsis thaliana] gi\|122229983\|sp\|Q0WP44.1\|HASTY_ARATH RecName: Full=Protein HASTY 1; AltName: Full=Protein HASTY gi\|110738356\|dbj\|BAF01105.1\| hypothetical protein [Arabidopsis thaliana] gi\|332640658\|gb\|AEE74179.1\| protein HASTY [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|28629393\|gb\|AAO34666.1\| HASTY [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|357512151\|ref\|XP_003626364.1\| Exportin-5 [Medicago truncatula] gi\|355501379\|gb\|AES82582.1\| Exportin-5 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297833212\|ref\|XP_002884488.1\| hypothetical protein ARALYDRAFT_477786 [Arabidopsis lyrata subsp. lyrata] gi\|297330328\|gb\|EFH60747.1\| hypothetical protein ARALYDRAFT_477786 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|307136050\|gb\|ADN33901.1\| hypothetical protein [Cucumis melo subsp. melo]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		845
TAIR\|locus:2114784		1202	HST "AT3G05040" [Arabidopsis t	0.973	0.684	0.665	1.4e-300
DICTYBASE\|DDB_G0284379		1135	xpo5 "exportin 5" [Dictyosteli	0.646	0.481	0.213	4.8e-25
UNIPROTKB\|Q9HAV4		1204	XPO5 "Exportin-5" [Homo sapien	0.770	0.540	0.216	1.6e-18
UNIPROTKB\|F1MUF1		1166	XPO5 "Uncharacterized protein"	0.736	0.533	0.206	2.7e-16
UNIPROTKB\|F1PEE4		1205	XPO5 "Uncharacterized protein"	0.733	0.514	0.207	7.2e-15
UNIPROTKB\|J9P8X1		1345	XPO5 "Uncharacterized protein"	0.733	0.460	0.207	8.3e-15
MGI\|MGI:1913789		1204	Xpo5 "exportin 5" [Mus musculu	0.772	0.542	0.208	1.2e-14
RGD\|1311522		1204	Xpo5 "exportin 5" [Rattus norv	0.771	0.541	0.206	2.5e-14
UNIPROTKB\|F1NBL6		1253	XPO5 "Uncharacterized protein"	0.728	0.491	0.213	5.8e-14
UNIPROTKB\|F1RRK9		1206	LOC100155084 "Uncharacterized	0.474	0.332	0.212	4.1e-13

TAIR\|locus:2114784 HST "AT3G05040" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2885 (1020.6 bits), Expect = 1.4e-300, P = 1.4e-300
 Identities = 562/844 (66%), Positives = 675/844 (79%)

Query:     4 QMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVA-HSTGDGSTVNNADSGSGKVDSRKM 62
             QMLG+FQHFK+ LHF++LLFWL+LMRDL+ K K A + +G GS+    DS S +VDS K 
Sbjct:   351 QMLGFFQHFKLGLHFEALLFWLSLMRDLLPKPKAATYPSGGGSSTGGDDSSS-QVDSEKK 409

Query:    63 RILSFLNDDISGAILDISFQRLVKREKAP-G---TQGPLELWSDDFEGKGDFSQYRSRLL 118
             + LS +NDDIS AILD+SFQR++K+EK P G   + GPLELWSD+FEGKGDF  YRS+LL
Sbjct:   410 KTLSLINDDISSAILDVSFQRMLKKEKVPTGIALSLGPLELWSDEFEGKGDFGPYRSKLL 469

Query:   119 ELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGS 178
             EL+K  AS+KPL++  K+SERV+ +I  LL S  P Q +AVM+S Q AL+ +V+ +FDGS
Sbjct:   470 ELIKLTASHKPLISSTKISERVITLIKHLLASPAPLQHVAVMDSQQLALDCIVATLFDGS 529

Query:   179 NQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGV 238
             N+F G +SEV  +L  IFEGLL+QLLSLKW EP L+    HYLDA+GPFLKY+PDAVG +
Sbjct:   530 NEFAGGSSEVHYALRGIFEGLLQQLLSLKWNEPELMKVHVHYLDAMGPFLKYFPDAVGSL 589

Query:   239 ISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQ 298
             I+KLFELLTSLP V KDP+T+++R ARLQICTSFIRIAK ++KS+LPHMK IADTM YL 
Sbjct:   590 INKLFELLTSLPHVVKDPATSTSRAARLQICTSFIRIAKAAEKSVLPHMKGIADTMGYLA 649

Query:   299 REGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGL 358
             +EG LLRGEHN+LGEAFLVMAS+AG QQQQEVLAWLLEPLSQQW+Q EWQNNYLS+P+GL
Sbjct:   650 KEGTLLRGEHNILGEAFLVMASSAGAQQQQEVLAWLLEPLSQQWIQPEWQNNYLSDPMGL 709

Query:   359 VRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMXXX 418
             VRLCS+TSFMWS++HTVTFFE+ALKRSG RK+NLN  S++   S   HPMA HLSWM   
Sbjct:   710 VRLCSNTSFMWSIYHTVTFFEKALKRSGYRKSNLNTTSATTPAS---HPMAHHLSWMLPP 766

Query:   419 XXXXXRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLD 478
                  R +HS+WSPS+ Q LP E++AAMTM+DAE++SLLGE NPK S+G   +ADGS  +
Sbjct:   767 LLKLLRVLHSLWSPSVFQTLPPEMRAAMTMTDAERYSLLGEANPKLSKGVSVYADGS-FE 825

Query:   479 TSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSME 538
              +KEG  E +ESDIRNWLKG+RD GYNVLGLS TIG+ FFK LD+  V +ALMEN+QSME
Sbjct:   826 GTKEGQAEASESDIRNWLKGIRDCGYNVLGLSTTIGETFFKCLDANYVAMALMENLQSME 885

Query:   539 FRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHE------- 591
             FRHIR  +H+ + ++VK CP DMWE WL  LL+PLFIHCQQ LSS+W  L+ E       
Sbjct:   886 FRHIRLFIHTFITYIVKSCPADMWESWLGVLLHPLFIHCQQALSSAWPGLLQEGRAKVPD 945

Query:   592 ----VAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSL 647
                  +GSD+K+EVMEEKLLRDLTREI +L STMAS GLN G+P +E SGH  RVD+ +L
Sbjct:   946 LFGIQSGSDMKLEVMEEKLLRDLTREIATLFSTMASPGLNTGVPVLEHSGHVGRVDMSTL 1005

Query:   648 KDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNN 707
              DL AF SNSMVGFLL HK +ALPALQI LE FTWTDGEA TKV  FC  VVLLA  +NN
Sbjct:  1006 TDLHAFRSNSMVGFLLNHKSVALPALQICLETFTWTDGEATTKVCYFCGVVVLLAKLTNN 1065

Query:   708 IELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCIT 767
             +ELR+FVSKD+FSA+IRGL +ESNA+ S DLV +CREIFIY+ DRDPAPRQVLLSLPC+T
Sbjct:  1066 VELREFVSKDMFSAVIRGLGMESNAINSPDLVNICREIFIYLSDRDPAPRQVLLSLPCLT 1125

Query:   768 PQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSSDN 827
             P DL AFE+A  KT+SP+EQKQ MRSLL+LGTGNNLKALAAQKS NVITNV+ R R   +
Sbjct:  1126 PNDLHAFEEATAKTSSPKEQKQLMRSLLLLGTGNNLKALAAQKSQNVITNVTARTRLPAS 1185

Query:   828 APES 831
             APE+
Sbjct:  1186 APET 1189

GO:0005487 "nucleocytoplasmic transporter activity" evidence=NAS

GO:0005635 "nuclear envelope" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0035281 "pre-miRNA export from nucleus" evidence=IMP;TAS

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

DICTYBASE\|DDB_G0284379 xpo5 "exportin 5" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9HAV4 XPO5 "Exportin-5" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MUF1 XPO5 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PEE4 XPO5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P8X1 XPO5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:1913789 Xpo5 "exportin 5" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1311522 Xpo5 "exportin 5" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NBL6 XPO5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RRK9 LOC100155084 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WP44	HASTY_ARATH	No assigned EC number	0.6714	0.9751	0.6855	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		845
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	99.69
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	98.78
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	98.63
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	96.83
KOG2081		559	consensus Nuclear transport regulator [Intracellul	96.7
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	94.7
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	92.18
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	91.05
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	88.07
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	87.06
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	84.24
PF11935		239	DUF3453: Domain of unknown function (DUF3453); Int	81.22

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=99.69  E-value=1.8e-15  Score=183.95  Aligned_cols=647  Identities=12%  Similarity=0.038  Sum_probs=384.8

Q ss_pred             CHHHHHhhhccchHHHHHhHHHHHHHHHHhhhc-ccc-ccccCCCCCcccCCCCCCCCccchhhhhhcccchhhHHHHHH
Q 003136            1 MSFQMLGYFQHFKIALHFQSLLFWLALMRDLMS-KTK-VAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILD   78 (845)
Q Consensus         1 yL~~~L~~t~HpSl~ls~~~l~~W~~llr~~~~-k~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~LL~   78 (845)
                      |+..++.++.|||...++ ++..|+.+++|... +++ ++.+++                                    
T Consensus       336 ~~~li~i~~~~~se~~~~-~ld~W~~lv~~l~~~~~~ll~~s~~------------------------------------  378 (1041)
T KOG2020|consen  336 LLELILISTIEPSEIFKI-CLDYWNKLVADLYYNKPPLLQLSTT------------------------------------  378 (1041)
T ss_pred             HHHHHHHhccCchhHHHH-HHHHHHHHHHhhhcccccccccccc------------------------------------
Confidence            567889999999999999 99999999999332 333 222211                                    


Q ss_pred             HHHHHHhhhcCCCCCCCCccccccccCCchhH----HHHHhhHHHHHHHHhhcCchHHHHHHHHHHHHH---HhhcccCC
Q 003136           79 ISFQRLVKREKAPGTQGPLELWSDDFEGKGDF----SQYRSRLLELVKFVASNKPLVAGVKVSERVMAI---INSLLIST  151 (845)
Q Consensus        79 ~~~~rl~k~~~~~~~~~~~~~~~~DFds~~ef----~~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~---l~~~~~~~  151 (845)
                                 .++.   ..|.++||+ +++|    ++||     ++|...+.+|+..+-.-.++.+.+   ..+ ..+.
T Consensus       379 -----------~~~~---~~~~ri~~r-k~~y~~~~~~~r-----~l~l~~m~~Pe~vlive~~~~~~vre~~~~-~~~~  437 (1041)
T KOG2020|consen  379 -----------LPSI---SDYSRIDFR-KSIYQEFLSKLR-----LLRLERMAKPEEVLIVENEQGEIVREFMKD-HDFI  437 (1041)
T ss_pred             -----------cccc---cchhccchH-HHHHHHHHHHHH-----HHHHHHhcCchheeEEechHHHHHHHhccC-cchh
Confidence                       1111   228899999 8887    6777     899999999999992222222222   221 1234


Q ss_pred             CCchhhHHHhhHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhhhhhhcC
Q 003136          152 MPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYY  231 (845)
Q Consensus       152 ~~s~~~~~wea~~~~lE~vl~~~~~~~~~~~~~~~~~~~~l~~~~~~llq~lL~~~~~dPll~~~~l~~L~~l~~~l~~~  231 (845)
                      .-.+.+.+|++..++++.++...+...               +....+.+.+.+++..+|++-+..    +.-+      
T Consensus       438 ~ly~~~~e~l~~~~~L~~~~t~~~~~~---------------kl~~~l~~~~~~~~~ln~l~~ai~----sisg------  492 (1041)
T KOG2020|consen  438 TLYPVLRETLVYLLHLDVVDTEKIMTE---------------KLAIQLDGDEWSLHNLNRLCWAIG----SISG------  492 (1041)
T ss_pred             hhhHHHHHHHHHHHHhhhhhhhhhhhH---------------hHHHHhhHHHHhhhhhhhHHHHHH----HHHh------
Confidence            445889999999999999987655522               124567777788888888877664    1111      


Q ss_pred             CCchHHHHHHHHHHhcC-CCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHH--cCccchhhH
Q 003136          232 PDAVGGVISKLFELLTS-LPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQR--EGRLLRGEH  308 (845)
Q Consensus       232 p~~l~~VL~klf~~l~~-~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~--~~~Ls~~E~  308 (845)
                       .+++.+.+|+|..++. ........+..+     .. |..+..|++.+|  .+|.|...+   .+++.  ..+|-..++
T Consensus       493 -~~~e~~e~k~~~~v~~d~l~l~E~~~~kd-----n~-avi~~Ni~~vv~--q~p~Fl~~h---~~~Lkt~~~~L~efmh  560 (1041)
T KOG2020|consen  493 -RMLEDMEKKFFVAVIRDLLNLCERKRGKD-----NK-AVIASNIMYVVG--QYPRFLKAH---WKFLKTVVHKLFEFMH  560 (1041)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHhhcCC-----ch-hHHHHHHHHHhc--ccchHHHHH---HHHHHHHHHHHHHHHh
Confidence             4667778888886652 111111111111     11 666667999999  999999987   33333  234555555


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHHhh-chHhHhhhhcCCH------HHHHHHhcCCc--ccchhHhhHHHHH
Q 003136          309 NLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQW-MQLEWQNNYLSEP------LGLVRLCSDTS--FMWSLFHTVTFFE  379 (845)
Q Consensus       309 ~~L~EaLl~is~~~~~~~q~~~L~~ll~P~~~~W-~~~e~~~~~lss~------~~f~~~~g~~~--~~~~~~~~v~~~~  379 (845)
                      ....+    +.+     .+++.+-+++.+....| ..+.    +-..|      .++....|+-.  .+-..+..+.   
T Consensus       561 e~h~g----vqd-----macd~F~~ii~~~~~~fv~~~~----~e~~~fv~~~~~~l~~i~~~l~~~q~~~~~~al~---  624 (1041)
T KOG2020|consen  561 ETHEG----VQD-----MACDTFIKIIQKCKRHFVITQL----GETKPFVGELLLNLTAITEDLQPQQRHTFYEALG---  624 (1041)
T ss_pred             hhhHH----HHh-----hhHHHHHHHHHhhhhhheeecc----cccccchHHHhhcccchhcCchHHHHHHHHHHHH---
Confidence            55554    222     22335555555555554 2221    22222      11222222211  1222332222   


Q ss_pred             HHHHhcccccccc--cc-----ccCCCCCcccccchhhhhhhhhhHHHHHHHHHHhccCccccCcCcHHHHHHccCCHHH
Q 003136          380 RALKRSGIRKANL--NL-----QSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAE  452 (845)
Q Consensus       380 ~~Lkr~~~~~~~~--~s-----~~~~~~~~~~~~P~~~~i~~iLP~lL~Llr~~h~l~~P~~~~~Lp~~~~~~~~~~~~E  452 (845)
                      -+++|+..+....  -+     .+-.-+++..+++++..+...+-++..+++  ...++|++.+.+.+.+.+..++...|
T Consensus       625 ~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~~~v~s~~~--i~~~~~~~~~sl~~~f~~~~~~~~~d  702 (1041)
T KOG2020|consen  625 LMVSAEIDPAKAERLQSKLMVLPNRAWINIILQARCNDEILKLLETVKSLLN--ILKTNSRALTSLGSTFVPQLGKIYLD  702 (1041)
T ss_pred             HHHHHhCCHhhHHHHHhcccccchhhhcchhhcCcccHHhhcchHHHHHHHH--HHHhHHHHHHhcCcccccccccccHH
Confidence            2555553322110  00     112245567777888887778888887777  67777888888888888888888888


Q ss_pred             HhhhcCCCCCCCccccccccCCCccCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhh-cCCcccccCCCchh-HHHHH
Q 003136          453 QFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSA-TIGDPFFKSLDSGS-VVVAL  530 (845)
Q Consensus       453 r~~~lG~~~~~~sk~~~~~~d~~~~~~~~~~~~~~~~~~~r~~l~~~Re~~Y~ilg~~~-~l~~~FY~~~~l~~-l~~al  530 (845)
                      ...+.|......+.        ...+.   +..++..+++++|..-.||.|+++-|..+ ..+.+||.....++ +-..+
T Consensus       703 ~~~l~~~~s~~v~~--------~~~~~---~~~~t~~~~v~~~~svk~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  771 (1041)
T KOG2020|consen  703 MLQLYIKQSELVSI--------NVTAG---GSEKTKTPFVKTLRSVKREILKLLETFISKSEQRDLYLLMLVPPLLDAVL  771 (1041)
T ss_pred             HHHHHHHhcccccH--------HHhcc---cccccccHHHHHHHHHHHHHHHHHHhccCcccchhHHHHhhhhHHHHHHH
Confidence            88877753311111        11111   12355668999999999999999999999 88889999988888 66788


Q ss_pred             hccCCCCchhhHHHHHH--HHHHhhhccCChhhHHHHHHHHhHHHHHHHHHHHHhhHHHhhhhhcCCchhHHHHhhHHHH
Q 003136          531 MENIQSMEFRHIRQLVH--SVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLR  608 (845)
Q Consensus       531 f~~l~~l~~~~lr~ll~--~~vrplv~~CP~~~~~~~l~plL~~lf~~~~~rL~~~W~~i~~~~~~~~~~eE~leE~lLR  608 (845)
                      |.....+||.+.+.+++  .+++|        ...++++.-++..+.+...  +.    +   +......+|+.|++.-+
T Consensus       772 fd~~~nvPd~r~~~vl~l~~~iv~--------~Lg~~i~~~~~~i~~~v~~--c~----l---~m~~~d~qe~~e~~~~f  834 (1041)
T KOG2020|consen  772 FDYLDNVPDYRENEVLSLNATIVP--------KLGEFIPAELPLINIAVLE--CT----L---EMINKDFQEYPEHRLNF  834 (1041)
T ss_pred             HHHHccCcchhcchHHHhhhhhhh--------hhhhHhhhhccHHHHHHHh--hh----h---hccccccccchHHHHHH
Confidence            99999999999999885  22222        2233333333311111111  10    0   23456778999999999


Q ss_pred             HHhHHHHHHHHHHhcCCCCCCCCCCCCCCCccc-------ccccccccchhhhhhhhhHhHhcCc-----CchhHHHHHH
Q 003136          609 DLTREICSLLSTMASSGLNNGIPPIEQSGHFYR-------VDVLSLKDLDAFASNSMVGFLLKHK-----DLALPALQIS  676 (845)
Q Consensus       609 ~LTre~~~ll~~~~~~~~~~~~~~~~~~~~~~~-------~~~~s~~~~~~~~~~~l~~~ll~~~-----~i~~~~L~~~  676 (845)
                      .+++++..+.-..+..+...     ++.+.+..       +.|......+-.....+.+.+-..+     -....+..+|
T Consensus       835 ~~lle~l~~~~~~~~~~l~~-----~~~~~~~~si~~~f~h~~r~i~~~~l~~l~~l~k~~~~~~~~~~~~~~~~~~~~l  909 (1041)
T KOG2020|consen  835 LLLLEALLLFCFPAFSELPA-----DQVKLVSDSIVWAFHHTMRNIAENGLNILLELLKNLAEMEKFANAFYQTYFLSLL  909 (1041)
T ss_pred             HHHHHHHHHhhhHHHHcCCc-----hhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99999999884444333210     11111100       1111111111112233333333222     2345566777


Q ss_pred             HhhhcccchhhhhHHHHhHHHHHHHhhhccchhhhHHHHHHHHHHHHHhhcccchHhhHHHHHHHHHHHHHHhcCCCchH
Q 003136          677 LEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAP  756 (845)
Q Consensus       677 ~~~l~w~Dt~~~~ka~~f~~~Lv~~~~~~~~~~l~~~i~~~v~~a~L~~L~~~~~~~~~~~L~~L~~~iy~~l~~~~~~~  756 (845)
                      .+++.|-+-.+  +...||.....+.....   +-+...  ++.++.+++..|+   ++   +.|.-.||..++|.++. 
T Consensus       910 ~~~~~~~~~~~--~~~~f~~~~L~~~~l~~---l~~~~~--~~~~l~~~~~v~~---n~---~~L~e~i~~~l~~~f~~-  975 (1041)
T KOG2020|consen  910 QKIIAVLTDTD--HKAGFTKQVLKLQFLFR---LVESAK--LHTPLLQGNVVHG---NQ---AFLREYIYGLLRPAFPN-  975 (1041)
T ss_pred             HHHHHHHhccc--hhhcchHHHHHHHHHHH---HHHhhh--HHHhhccccccch---HH---HHHHHHHHHhhhhhchh-
Confidence            77776553332  44678888876653321   111112  7778889999888   33   88889999999987544 


Q ss_pred             HHHHHhCCCCCHHHHHHHHHHHhc-C----CChHHHHHHHHHHHhhhcCCchHHhhhhhcccc-cccCCCCC
Q 003136          757 RQVLLSLPCITPQDLLAFEDALTK-T----ASPREQKQHMRSLLVLGTGNNLKALAAQKSVNV-ITNVSTRP  822 (845)
Q Consensus       757 r~vL~~lP~i~~~~l~~f~~~L~~-~----~s~K~qr~~~k~LL~~~~g~~l~~l~~~~~~~v-i~~~~~~~  822 (845)
                               ++.+.+.+|+..+.. .    ...+.-|+   .......|.+.+++   ++..+ +++.++..
T Consensus       976 ---------~~~~~v~~~~~~~~~~~~~~~~~k~~~~d---~~~~e~~~~~~~~l---~~~e~~~~~~r~~~ 1032 (1041)
T KOG2020|consen  976 ---------LTDEQVRAFDIGLFDECKDVSPFKDHVRD---VQIKEFGGQDTSDL---FREEAEIRLLRANQ 1032 (1041)
T ss_pred             ---------hchHHHHHHhHHHHHHhcccchhhcchhh---HHHHHhcccchHHH---HHHHhhHHhhhhhc
Confidence                     444667777666654 2    22333344   33445677777776   66665 77777665

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		845
3a6p_A		1204	Crystal Structure Of Exportin-5:rangtp:pre-Mirna Co		1e-19

>pdb|3A6P|A Chain A, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex Length = 1204

Back alignment and structure

Iteration: 1

Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 153/736 (20%), Positives = 313/736 (42%), Gaps = 90/736 (12%) Query: 161 ESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEG--LLRQLLSLKWTEPPLVVALG 218 E+M LE+V++ +F N+ E+ ++ +G LL+ +L+ +P ++ + Sbjct: 504 EAMTLFLESVITQMFRTLNR-----EEIPVN-----DGIELLQMVLNFDTKDPLILSCVL 553 Query: 219 HYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVF----KDPSTNSARHARLQICTSFIR 274 + AL PF+ Y P+ + V SKLF +S+ F K P T + R+ R C+S I+ Sbjct: 554 TNVSALFPFVTYRPEFLPQVFSKLF---SSVTFETVEESKAPRTRAVRNVRRHACSSIIK 610 Query: 275 IAKTSDKSILPHMKDIADTMA-YLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEV-LA 332 + + + +LP+ + + + L E L + E L EA +++++ ++Q+V L Sbjct: 611 MCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLE 670 Query: 333 WLLEPLSQQWMQLEWQ--------------------NNYLSEPLGLVRLCSDTSFMWSLF 372 L+ P++ W+ + + L +P GL R + ++ Sbjct: 671 ELMAPVASIWLSQDMHRVLSDVDAFIAYVGTDQKSCDPGLEDPCGLNR----ARMSFCVY 726 Query: 373 HTVTFFERALKRSGIRKANLN---LQSSSAENSAVMHPMASHLSWMXXXXXXXXRAIHSI 429 + +R + + +A + +S+ N +P + + R +++ Sbjct: 727 SILGVVKRTCWPTDLEEAKAGGFVVGYTSSGNPIFRNPCTEQILKLLDNLLALIRTHNTL 786 Query: 430 WSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNE 489 ++P + + A+ M DAE+ ++LG P + D T E Sbjct: 787 YAPEMLAKMAEPFTKALDMLDAEKSAILGLPQP-----LLELNDSPVFKTVLE------- 834 Query: 490 SDIRNWLKGVRDSGYNVLGLSA-TIGDPFFKSLD-SGSVVVALMENIQSMEFRHIRQLVH 547 ++ + + ++ +++LG + ++ F+ D + ++ + N+ ++ +R ++ Sbjct: 835 -RMQRFFSTLYENCFHILGKAGPSMQQDFYTVEDLATQLLSSAFVNLNNIPDYRLRPMLR 893 Query: 548 SVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHE--VAGSDLKV------ 599 + +V FCP + +E + +L PLF + LS W + + G D Sbjct: 894 VFVKPLVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVINQRSLLCGEDEAADENPES 953 Query: 600 -EVMEEKLLRDLTREICSLLSTMASS---GLNNGIPPIEQSGHFYRVDVLSLKDLDAFAS 655 E++EE+L+R LTRE+ L++ S ++ PP + ++ A A Sbjct: 954 QEMLEEQLVRMLTREVMDLITVCCVSKKGADHSSAPPADGDDEEMMATEVT---PSAMAE 1010 Query: 656 NSMVG-FLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFV 714 + +G L+KH+D+ L + + W D + + +S +L + S + L V Sbjct: 1011 LTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLSGTL-LADAV 1069 Query: 715 SKDLFSAIIRGLALE-SNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLA 773 + LF+++++GL + + A LV L +I+ + R R V+ +P I L Sbjct: 1070 TW-LFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPEIQKDSLDQ 1128 Query: 774 FE-----DALTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSSDNA 828 F+ +L K A R + Q R L+ G +K V+ I N+ + + + Sbjct: 1129 FDCKLLNPSLQKVADKRRKDQFKR--LIAGCIGKPLGEQFRKEVH-IKNLPSLFKKTKPM 1185 Query: 829 PESRTEEGESIGLAAI 844 E+ + + GLA I Sbjct: 1186 LETEVLDNDGGGLATI 1201

PyMOL of 3a6p

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		845
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	1e-115
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	2e-07
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	3e-06
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	4e-05

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

 Score =  377 bits (968), Expect = e-115
 Identities = 167/903 (18%), Positives = 347/903 (38%), Gaps = 118/903 (13%)

Query: 4    QMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMR 63
              L +  H    L   + + W AL R                          ++ SR   
Sbjct: 355  SFLAFTTHPSQFLRSSTQMTWGALFRH-------------------------EILSRDPL 389

Query: 64   ILSFLNDDISGAILDISFQRLVKREKAPGTQGP-LELWSDDFEGKGD----FSQYRSRLL 118
            +L+ +        L  S   LVK      T  P  E    DF+   D    F+  R++  
Sbjct: 390  LLAIIPK-----YLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQG 444

Query: 119  ELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAV-----------------ME 161
            E+++      P  +     E +   +++ L +       AV                  E
Sbjct: 445  EVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWE 504

Query: 162  SMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYL 221
            +M   LE+V++ +F   N+        ++ ++   E LL+ +L+    +P ++  +   +
Sbjct: 505  AMTLFLESVITQMFRTLNRE-------EIPVNDGIE-LLQMVLNFDTKDPLILSCVLTNV 556

Query: 222  DALGPFLKYYPDAVGGVISKLFELLT-SLPFVFKDPSTNSARHARLQICTSFIRIAKTSD 280
             AL PF+ Y P+ +  V SKLF  +T       K P T + R+ R   C+S I++ +   
Sbjct: 557  SALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYP 616

Query: 281  KSILPHMKDIADTMA-YLQREGRLLRGEHNLLGEAFLVMASAAG-IQQQQEVLAWLLEPL 338
            + +LP+   + + +   L  E  L + E   L EA +++++     ++Q+  L  L+ P+
Sbjct: 617  QLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPV 676

Query: 339  SQQWMQLEWQNNYLSEPLGLVRLC-----------------SDTSFMWSLFHTVTFFERA 381
            +  W+  +     LS+    +                    +     + ++  +   +R 
Sbjct: 677  ASIWLSQDMH-RVLSDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRT 735

Query: 382  LKRSGIRKANLN---LQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLL 438
               + + +A      +  +S+ N    +P    +  +L  LL L+R  +++++P +   +
Sbjct: 736  CWPTDLEEAKAGGFVVGYTSSGNPIFRNPCTEQILKLLDNLLALIRTHNTLYAPEMLAKM 795

Query: 439  PGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKG 498
                  A+ M DAE+ ++LG   P              L+ +     +     ++ +   
Sbjct: 796  AEPFTKALDMLDAEKSAILGLPQPL-------------LELNDSPVFKTVLERMQRFFST 842

Query: 499  VRDSGYNVLGLSAT-IGDPFFKSLD-SGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKF 556
            + ++ +++LG +   +   F+   D +  ++ +   N+ ++    +R ++   +  +V F
Sbjct: 843  LYENCFHILGKAGPSMQQDFYTVEDLATQLLSSAFVNLNNIPDYRLRPMLRVFVKPLVLF 902

Query: 557  CPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHE---------VAGSDLKVEVMEEKLL 607
            CP + +E  +  +L PLF +    LS  W  +               +    E++EE+L+
Sbjct: 903  CPPEHYEALVSPILGPLFTYLHMRLSQKWQVINQRSLLCGEDEAADENPESQEMLEEQLV 962

Query: 608  RDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNS-MVGFLLKHK 666
            R LTRE+  L++    S           +       + +     A A  + +   L+KH+
Sbjct: 963  RMLTREVMDLITVCCVSKKGADHSSAPPADGDDEEMMATEVTPSAMAELTDLGKCLMKHE 1022

Query: 667  DLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGL 726
            D+    L  +  +  W D  +  + +S     +L  + S    L       LF+++++GL
Sbjct: 1023 DVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLSG--TLLADAVTWLFTSVLKGL 1080

Query: 727  ALE-SNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKT---- 781
             +   +    A LV L  +I+  +  R    R V+  +P I    L  F+  L       
Sbjct: 1081 QMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPEIQKDSLDQFDCKLLNPSLQK 1140

Query: 782  ASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSSDNAPESRTEEGESIGL 841
             + + +K   + L+    G  L      +    I N+ +  + +    E+   + +  GL
Sbjct: 1141 VADKRRKDQFKRLIAGCIGKPLGEQF--RKEVHIKNLPSLFKKTKPMLETEVLDNDGGGL 1198

Query: 842  AAI 844
            A I
Sbjct: 1199 ATI 1201

PyMOL of 3a6p

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		845
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	100.0
2x19_B		963	Importin-13; nuclear transport, protein transport;	99.8
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.78
2x1g_F		971	Cadmus; transport protein, developmental protein,	99.78
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.66
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.38
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	98.97
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	98.07
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	97.51
1qgr_A		876	Protein (importin beta subunit); transport recepto	97.39
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	96.52

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=2.8e-107  Score=1034.99  Aligned_cols=779  Identities=21%  Similarity=0.304  Sum_probs=611.0

Q ss_pred             CHHHHHhhhccchHHHHHhHHHHHHHHHHh-hhccccccccCCCCCcccCCCCCCCCccchhhhhhcccchhhHHHHHHH
Q 003136            1 MSFQMLGYFQHFKIALHFQSLLFWLALMRD-LMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDI   79 (845)
Q Consensus         1 yL~~~L~~t~HpSl~ls~~~l~~W~~llr~-~~~k~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~LL~~   79 (845)
                      |+++||.+|+||+..|+..++.||.+++|+ .+++..                          .+     .++++.|+++
T Consensus       352 ~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~--------------------------~~-----~~~l~~Ll~v  400 (1204)
T 3a6p_A          352 YLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDP--------------------------LL-----LAIIPKYLRA  400 (1204)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCH--------------------------HH-----HHHHHHHHHH
T ss_pred             HHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccH--------------------------HH-----HHHHHHHHHH
Confidence            588999999999999999999999999999 322211                          12     2789999999


Q ss_pred             HHHHHhhhcCCCCCCC--CccccccccCCchh----HHHHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcc-----
Q 003136           80 SFQRLVKREKAPGTQG--PLELWSDDFEGKGD----FSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLL-----  148 (845)
Q Consensus        80 ~~~rl~k~~~~~~~~~--~~~~~~~DFds~~e----f~~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~-----  148 (845)
                      +++|+.|. ..|++..  +.+|..+|||+++|    |.+||+++.+++|.++++.|..++.++.+|+...+.+..     
T Consensus       401 l~~~l~k~-~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~  479 (1204)
T 3a6p_A          401 SMTNLVKM-GFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSV  479 (1204)
T ss_dssp             HHHHHSCC-CCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC------
T ss_pred             HHHHHHHh-cCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhccccc
Confidence            99988776 3343322  24577799999866    489999999999999999999999999999988876531     


Q ss_pred             ------------cCCCCchhhHHHhhHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCCCchHHHH
Q 003136          149 ------------ISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVA  216 (845)
Q Consensus       149 ------------~~~~~s~~~~~wea~~~~lE~vl~~~~~~~~~~~~~~~~~~~~l~~~~~~llq~lL~~~~~dPll~~~  216 (845)
                                  .|+..++.+..|||+.+++||+++++++|.. .+.  .+.     ..++++++.|++++++||.++.+
T Consensus       480 ~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e-~~~--l~~-----~~~~~Ll~~ll~~~~~~p~l~~~  551 (1204)
T 3a6p_A          480 NSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLN-REE--IPV-----NDGIELLQMVLNFDTKDPLILSC  551 (1204)
T ss_dssp             -----------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSC-TTC--CCH-----HHHHHHHHHHHHCCCSCHHHHHH
T ss_pred             ccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccc-ccc--ccH-----HHHHHHHHHHHhCCCCChHHHHH
Confidence                        3466789999999999999999999999763 121  111     23788999999999999999999


Q ss_pred             HHHHHHhhhhhhhcCCCchHHHHHHHHHHhcCC-CCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHH
Q 003136          217 LGHYLDALGPFLKYYPDAVGGVISKLFELLTSL-PFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMA  295 (845)
Q Consensus       217 ~l~~L~~l~~~l~~~p~~l~~VL~klf~~l~~~-p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~  295 (845)
                      ++++++.++.++.++|+++++||++||+.+++. |+..++++++++|++|++||++|.++|+.+++.+.||+++|.+.+.
T Consensus       552 ~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~  631 (1204)
T 3a6p_A          552 VLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVK  631 (1204)
T ss_dssp             HHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988864 5456778899999999999999999999999999999999999999


Q ss_pred             HHHHcCc-cchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHhHHHHHhhchHhHhhhhcCCHHHHHHHhcCC--------
Q 003136          296 YLQREGR-LLRGEHNLLGEAFLVMAS-AAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDT--------  365 (845)
Q Consensus       296 ~L~~~~~-Ls~~E~~~L~EaLl~is~-~~~~~~q~~~L~~ll~P~~~~W~~~e~~~~~lss~~~f~~~~g~~--------  365 (845)
                      +++++++ ++.+|++.|+||++++++ ..+.++|.++|+++++|+.+.|.+++|++ ++++|.+|++++|..        
T Consensus       632 ~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~~~~-~~s~~~~f~~~~G~~~~~~~~~~  710 (1204)
T 3a6p_A          632 QLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMHR-VLSDVDAFIAYVGTDQKSCDPGL  710 (1204)
T ss_dssp             HHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHHHHH-HHHCHHHHHHHHTSSCC--CTTC
T ss_pred             HHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHHHHH-hhcCHHHHHHHhCCCCCcccccc
Confidence            9999998 999999999999999987 68899999999999999999999999997 999999999999921        


Q ss_pred             -----cccchhHhhHHHHHHHHHhccccccc---------cccccCCCCCcccccchhhhhhhhhhHHHHHHHHHHhccC
Q 003136          366 -----SFMWSLFHTVTFFERALKRSGIRKAN---------LNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWS  431 (845)
Q Consensus       366 -----~~~~~~~~~v~~~~~~Lkr~~~~~~~---------~~s~~~~~~~~~~~~P~~~~i~~iLP~lL~Llr~~h~l~~  431 (845)
                           ..|+.++++++.+++++||++++..+         +++  ...++|.++||+++++++|||+|++|+|++|++|+
T Consensus       711 ~d~~~~~r~~l~~~~~~l~~~l~r~~~~~~~~~~~~~gf~~~~--~~~~~p~~~~p~~~~i~~ilP~ll~Ll~~~~~l~~  788 (1204)
T 3a6p_A          711 EDPCGLNRARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGY--TSSGNPIFRNPCTEQILKLLDNLLALIRTHNTLYA  788 (1204)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHTTCEEEE--CSSCCEEECCTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHHhcCCCChhhhhcCCceecc--CCCCCccccCchHHHHHHHhHHHHHHHHHHHHhcC
Confidence                 13789999999999999998665432         221  13677899999999999999999999999999999


Q ss_pred             ccccCcCcHHHHHHccCCHHHHhhhcCCCCCCCccccccccCCCccCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhh
Q 003136          432 PSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSA  511 (845)
Q Consensus       432 P~~~~~Lp~~~~~~~~~~~~Er~~~lG~~~~~~sk~~~~~~d~~~~~~~~~~~~~~~~~~~r~~l~~~Re~~Y~ilg~~~  511 (845)
                      |++|+++|++|+++++|+++||+|++|.+.  .++   +|++..        ......+++|+|++.+||+||++||+++
T Consensus       789 p~~~~~l~~~~~~~~~~~~~er~~~~g~~~--~~~---~~~~~~--------~~~~~~~~l~~~~~~~re~~y~~lg~~~  855 (1204)
T 3a6p_A          789 PEMLAKMAEPFTKALDMLDAEKSAILGLPQ--PLL---ELNDSP--------VFKTVLERMQRFFSTLYENCFHILGKAG  855 (1204)
T ss_dssp             HHHHTTSCGGGTTTTSCCHHHHHHHTCCCC--CCC---CTTCCC--------SCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHhhhhcCHHHHHHHhccHHHHHHhcCCCc--ccc---cccccC--------CCcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999876  333   444431        2246789999999999999999999995


Q ss_pred             -cCCcccccCCCchh-HHHHHhccCCCCchhhHHHHHHHHHHhhhccCChhhHHHHHHHHhHHHHHHHHHHHHhhHHHhh
Q 003136          512 -TIGDPFFKSLDSGS-VVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLM  589 (845)
Q Consensus       512 -~l~~~FY~~~~l~~-l~~alf~~l~~l~~~~lr~ll~~~vrplv~~CP~~~~~~~l~plL~~lf~~~~~rL~~~W~~i~  589 (845)
                       ++|++||++++++. +..|+|+++++||+||||.+||++++|+|++||+++|++|+.|+|+++|++|++||+++|+.+.
T Consensus       856 ~~l~~~fy~~~~l~~~l~~~~f~~l~~~~~~~l~~li~~~~~p~i~~CP~~~~~~~l~plL~~lf~~~~~~L~~~W~~i~  935 (1204)
T 3a6p_A          856 PSMQQDFYTVEDLATQLLSSAFVNLNNIPDYRLRPMLRVFVKPLVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVIN  935 (1204)
T ss_dssp             HHHCTTTTTSTTHHHHHHHHTTSSTTTSCHHHHHHHHHHTHHHHHHTCCGGGTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccCCcchHHHHHHHHHhcchhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             99999999999976 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhh---------cCCchhHHHHhhHHHHHHhHHHHHHHHHHhcCCCCCCCCCCCCCCCccccc--cccc--ccchhhhhh
Q 003136          590 HEV---------AGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVD--VLSL--KDLDAFASN  656 (845)
Q Consensus       590 ~~~---------~~~~~~eE~leE~lLR~LTre~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~--~~~~~~~~~  656 (845)
                      +++         +++++++||+||+|||+|||++++++.+++.++.+ +.+  ..+|+.+.+|  +.+.  .+......+
T Consensus       936 ~~~~~~~~~~~~~~~~~~~E~~~e~llr~lTr~~~~ll~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1204)
T 3a6p_A          936 QRSLLCGEDEAADENPESQEMLEEQLVRMLTREVMDLITVCCVSKKG-ADH--SSAPPADGDDEEMMATEVTPSAMAELT 1012 (1204)
T ss_dssp             TC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHBC---------------------------------CBC
T ss_pred             HHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCc--cccccccccccccccccccccchhhcc
Confidence            851         24679999999999999999999999999877532 211  1223333332  2222  222345558


Q ss_pred             hhhHhHhcCcCchhHHHHHHHhhhcccchh-hhhHHHHhHHHHHHHhhhccchhhhHHHHHHHHHHHHHhhcccch-Hhh
Q 003136          657 SMVGFLLKHKDLALPALQISLEAFTWTDGE-AVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESN-AVI  734 (845)
Q Consensus       657 ~l~~~ll~~~~i~~~~L~~~~~~l~w~Dt~-~~~ka~~f~~~Lv~~~~~~~~~~l~~~i~~~v~~a~L~~L~~~~~-~~~  734 (845)
                      +|++|+|.|+++++|+|.+|+++|+|+||+ |+.+|+.||+.+++....  +..+.+. +.++|+++|+||+.+++ +++
T Consensus      1013 ~l~~~~l~~~~~~~~~l~~~~~~l~~~D~~~~~~~~~~~~~~~v~~~~~--~~~~~~~-~~~l~~~vl~~l~~~~~~~~~ 1089 (1204)
T 3a6p_A         1013 DLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLS--GTLLADA-VTWLFTSVLKGLQMHGQHDGC 1089 (1204)
T ss_dssp             HHHHHHHSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHHTHHHHHTTSCS--SCCCHHH-HHHHHHHHHHHHHHSCSCHHH
T ss_pred             hHHHHHhcCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHhc--ccCchHH-HHHHHHHHHHHHHhcCCCchh
Confidence            999999999999999999999999999999 899999999999987643  3345555 99999999999998887 899


Q ss_pred             HHHHHHHHHHHHHHhcCCCchHHHHHHhCCCCCHHHHHHHHHHHhcCC----ChHHHHHHHHHHHhhhcCCchHHhhhhh
Q 003136          735 SADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTA----SPREQKQHMRSLLVLGTGNNLKALAAQK  810 (845)
Q Consensus       735 ~~~L~~L~~~iy~~l~~~~~~~r~vL~~lP~i~~~~l~~f~~~L~~~~----s~K~qr~~~k~LL~~~~g~~l~~l~~~~  810 (845)
                      ++|+++|++.||+.|++++++||+||++||||+++++++|+++|.++.    ++|+||++||||+++++|++++++   +
T Consensus      1090 ~~~l~~l~~~i~~~~~~~~~~~~~vl~~lP~i~~~~~~~f~~~l~~~~~~~~~~k~qr~~~~~ll~~~~g~~~~~~---~ 1166 (1204)
T 3a6p_A         1090 MASLVHLAFQIYEALRPRYLEIRAVMEQIPEIQKDSLDQFDCKLLNPSLQKVADKRRKDQFKRLIAGCIGKPLGEQ---F 1166 (1204)
T ss_dssp             HHHHHHHHHHHHHHSTTTCSTHHHHHTTSSSCCHHHHHHHHHHSSCC---------------------------------
T ss_pred             HHHHHHHHHHHHHHhCCCCccHHHHHHhCCCCCHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHhcCCcHHHh---h
Confidence            999999999999999999999999999999999999999999997643    599999999999999999997775   9


Q ss_pred             cccc-cccCCCCCCCCCCCCCCccccCcccccccC
Q 003136          811 SVNV-ITNVSTRPRSSDNAPESRTEEGESIGLAAI  844 (845)
Q Consensus       811 ~~~v-i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  844 (845)
                      +++| |+|+||.+|.+|++.+...-|.+.-||+.|
T Consensus      1167 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 1201 (1204)
T 3a6p_A         1167 RKEVHIKNLPSLFKKTKPMLETEVLDNDGGGLATI 1201 (1204)
T ss_dssp             -----------------------------------
T ss_pred             cccccccCCCCCCCCCCCCCcCCCCCCccccHHHh
Confidence            9999 999999988777777666556655599876

PyMOL of 3a6p

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		845
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	96.94
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	92.94
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	91.35

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.015  Score=68.05  Aligned_cols=197  Identities=16%  Similarity=0.228  Sum_probs=126.2

Q ss_pred             HHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCchhhHHHhhHHHHHHHHHHHHhcCCCCCCCCChHHHHH
Q 003136          112 QYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLS  191 (845)
Q Consensus       112 ~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s~~~~~wea~~~~lE~vl~~~~~~~~~~~~~~~~~~~~  191 (845)
                      +.|+-....+..++...+...+..+.+.+...+.++        ....=||....+-++..++.+.              
T Consensus       372 ~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s~--------~~~~reaa~~alg~i~eg~~~~--------------  429 (888)
T d1qbkb_         372 NLRKCSAAALDVLANVYRDELLPHILPLLKELLFHH--------EWVVKESGILVLGAIAEGCMQG--------------  429 (888)
T ss_dssp             SSHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTSS--------SHHHHHHHHHHHHHHTTTSHHH--------------
T ss_pred             hHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhccc--------hhHHHHHHHHHhhhhhhhHHHH--------------
Confidence            567777888888888888888888888777766543        2222344444444443332221              


Q ss_pred             HHHHHHHHHHHHh-ccCCCCchHHHHHHHHHHhhhhhhhcCC--CchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHH
Q 003136          192 LSRIFEGLLRQLL-SLKWTEPPLVVALGHYLDALGPFLKYYP--DAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQI  268 (845)
Q Consensus       192 l~~~~~~llq~lL-~~~~~dPll~~~~l~~L~~l~~~l~~~p--~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a  268 (845)
                      +...+..++..++ .++-.+|.++...+.+|..++.+.....  .++..++..+++.+.       + .+   +.+|.+|
T Consensus       430 ~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~-------d-~~---~~V~~~a  498 (888)
T d1qbkb_         430 MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL-------D-SN---KRVQEAA  498 (888)
T ss_dssp             HTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHS-------S-SC---HHHHHHH
T ss_pred             hcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhc-------C-CC---HHHHHHH
Confidence            1111333333333 2355678888877777777776554332  345566676766553       1 11   4789999


Q ss_pred             HHHHHHHHhhccccccchHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhcCCCH-HHHHHHHHHHhHHHHHhhc
Q 003136          269 CTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGI-QQQQEVLAWLLEPLSQQWM  343 (845)
Q Consensus       269 ~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~~~Ls~~E~~~L~EaLl~is~~~~~-~~q~~~L~~ll~P~~~~W~  343 (845)
                      |..|..++......+.|+++.+.+.+...+..  .....+..+++++-.++...+. -.+..++..++.++...|.
T Consensus       499 ~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~--~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~  572 (888)
T d1qbkb_         499 CSAFATLEEEACTELVPYLAYILDTLVFAFSK--YQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWN  572 (888)
T ss_dssp             HHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTT--CCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHH
Confidence            99999999998999999999998877655443  3455566778888777652222 2345677888888888885

PyMOL of d1qbkb_

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure