Citrus Sinensis ID: 003155

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840---
MNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGALKPLELNRVPVL
cccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHcHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccc
ccccccHHHHHHHHHHHccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccEEEcc
mnshpefvpGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLkhripgsvlashPLVLTALSSLHSEILSEASVNVISELIHYsaagssggatvnmpLIQVIVPQIMSLkahltdsskdEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLevashpeydiasmTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRvqypqdyqdlsLEDLKEfkhtrydlaccssstlTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVaccgnkhnewrpaEAALFCIRAISTYVSVVEAEVMPQVMAllpklpqqpqlLQTVCLTIGAYSkwfdaassdpSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTavngegslkvsaeDSLHLVEALSMVITELPQVDAKKALEMlclpvvtplqeiinqgpeilqkkhprdltvhIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKifgsdpscaSYLHNLIEALFKRTTCLLTSieeftsrpdvaddCFLLASRcirycpqlfipssvfpslvdcsmigiTVQHREASNSILTFLSDIFDLaksckgeeflsvrdsviiprgaSITRILIASLTgalpssrlETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAasgvdvnaamapveELSDVCRRNRTVQEIVQGAlkplelnrvpvl
MNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGpeilqkkhprdLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSieeftsrpdvADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKgeeflsvrdsviiprGASITRILIASltgalpssrlETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIvqgalkplelnrvpvl
MNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMAllpklpqqpqllqTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTaaaaalaFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGALKPLELNRVPVL
******FVPGFLELLTVLPEEVFNYKIAAR***********TSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHL*********VKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGN**********RLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQG********CFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGAL***********
***HPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFG******AERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNR***********PLELNRVPVL
MNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAH********EDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGN*********RRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGALKPLELNRVPVL
****PEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGALKPLELNRVPVL
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MNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGALKPLELNRVPVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query843 2.2.26 [Sep-21-2011]
Q9Y5L0923 Transportin-3 OS=Homo sap yes no 0.841 0.768 0.242 4e-55
Q6P2B1923 Transportin-3 OS=Mus musc yes no 0.841 0.768 0.240 4e-54
Q9USZ2955 Uncharacterized protein C yes no 0.833 0.736 0.222 2e-38
Q99189972 mRNA transport regulator yes no 0.660 0.573 0.226 4e-24
Q5ZIC8958 Importin-13 OS=Gallus gal no no 0.776 0.683 0.211 2e-20
Q8K0C1963 Importin-13 OS=Mus muscul no no 0.657 0.575 0.221 2e-19
Q5R974963 Importin-13 OS=Pongo abel no no 0.659 0.577 0.213 2e-19
A7YWD2963 Importin-13 OS=Bos taurus no no 0.661 0.579 0.212 6e-19
O94829963 Importin-13 OS=Homo sapie no no 0.657 0.575 0.218 7e-19
Q9JM04963 Importin-13 OS=Rattus nor no no 0.655 0.574 0.220 1e-18
>sp|Q9Y5L0|TNPO3_HUMAN Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3 Back     alignment and function desciption
 Score =  217 bits (552), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 195/804 (24%), Positives = 346/804 (43%), Gaps = 95/804 (11%)

Query: 8   VPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVL- 66
           +P  LE+LTVLPEEV +  +     RR +  ++L       +S L  C+      E++L 
Sbjct: 140 LPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTVVSLLMTCVEKAGTDEKMLM 199

Query: 67  ---EAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSG 123
                  SW  L       VL S+ +    L +L  E+L +   +  S  +H +A+    
Sbjct: 200 KVFRCLGSWFNL------GVLDSNFMANNKLLALLFEVLQQ---DKTSSNLHEAASDCVC 250

Query: 124 GA-------TVNMPLIQVIVPQIMSLKA--HLTDSSKDEEDVKAIARLFADMGDSYVELI 174
            A         N+PL   +   +++L+   H+  + +D + V    R+F ++ ++++E I
Sbjct: 251 SALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDLDKVLNYCRIFTELCETFLEKI 310

Query: 175 ATGSDESM---LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEA 231
                + +     +  LL  A HP+Y++  ++FNFW+ L   L K +  +  G       
Sbjct: 311 VCTPGQGLGDLRTLELLLICAGHPQYEVVEISFNFWYRLGEHLYKTNDEVIHG------- 363

Query: 232 ERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLE--DLKEFKHTRYDLACCSSSTLTE 289
                  +F++  + L+  ++   Q   D++ +  E  D  EF+                
Sbjct: 364 -------IFKAYIQRLLHALARHCQLEPDHEGVPEETDDFGEFR---------------- 400

Query: 290 SVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAIST 349
               + V+D++ D   ++G       LY    EG       +  W   EA LF + AI+ 
Sbjct: 401 ----MRVSDLVKDLIFLIGSMECFAQLYSTLKEG-------NPPWEVTEAVLFIMAAIA- 448

Query: 350 YVSVVEAEVMPQVMALLPKLPQQPQLLQTVC--LTIGAYSKWFDAASSDPSILASVLSIL 407
               V+ E  P ++ +L  + + P+ + T     +I    +  +    +P  L  VL  L
Sbjct: 449 --KSVDPENNPTLVEVLEGVVRLPETVHTAVRYTSIELVGEMSEVVDRNPQFLDPVLGYL 506

Query: 408 TSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHL 467
             G+   +  A+AAA A  +IC  CR  +  + +GL  + R+      S  +S E ++ L
Sbjct: 507 MKGLC-EKPLASAAAKAIHNICSVCRDHMAQHFNGLLEIARSL----DSFLLSPEAAVGL 561

Query: 468 VEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYI 527
           ++  ++V+  LP     + L  LC   V  L+++++Q P         D TV +DR A I
Sbjct: 562 LKGTALVLARLPLDKITECLSELCSVQVMALKKLLSQEPS---NGISSDPTVFLDRLAVI 618

Query: 528 FRYVN--------HPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRF 579
           FR+ N        HP      IQ +WP+     +    D R +E  CR  ++AVR   + 
Sbjct: 619 FRHTNPIVENGQTHP--CQKVIQEIWPVLSETLNKHRADNRIVERCCRCLRFAVRCVGKG 676

Query: 580 MGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLL 639
               +  ++ ++  +Y  HQ  CFLYL S ++  +G +  C   L ++++AL   T  LL
Sbjct: 677 SAALLQPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQGLLDMLQALCIPTFQLL 736

Query: 640 TSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSIL 699
                  + PD  DD F LA+R I+  P   + S V   ++  ++   T+ HR+A+ S++
Sbjct: 737 EQQNGLQNHPDTVDDLFRLATRFIQRSPVTLLRSQVVIPILQWAIASTTLDHRDANCSVM 796

Query: 700 TFLSDIFDLAKSCKGEEFLSVRD----SVIIPRGASITRILIASLTGALPSSRLETVTYA 755
            FL D+     +   EE   +R      V+   G  +   L+ +    LP   L  V   
Sbjct: 797 RFLRDLIHTGVANDHEEDFELRKELIGQVMNQLGQQLVSQLLHTCCFCLPPYTLPDVAEV 856

Query: 756 LLALTRAYGVRSLEWAKESVSLIP 779
           L  + +        W + S+  +P
Sbjct: 857 LWEIMQVDRPTFCRWLENSLKGLP 880
Seems to function in nuclear protein import as nuclear transport receptor. In vitro, mediates the nuclear import of splicing factor SR proteins RBM4, SFRS1 and SFRS2, by recognizing phosphorylated RS domains.
Homo sapiens (taxid: 9606)
>sp|Q6P2B1|TNPO3_MOUSE Transportin-3 OS=Mus musculus GN=Tnpo3 PE=1 SV=1 Back     alignment and function description
>sp|Q9USZ2|YNR7_SCHPO Uncharacterized protein C11G11.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC11G11.07 PE=4 SV=2 Back     alignment and function description
>sp|Q99189|MTR10_YEAST mRNA transport regulator MTR10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR10 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZIC8|IPO13_CHICK Importin-13 OS=Gallus gallus GN=IPO13 PE=2 SV=1 Back     alignment and function description
>sp|Q8K0C1|IPO13_MOUSE Importin-13 OS=Mus musculus GN=Ipo13 PE=2 SV=1 Back     alignment and function description
>sp|Q5R974|IPO13_PONAB Importin-13 OS=Pongo abelii GN=IPO13 PE=2 SV=1 Back     alignment and function description
>sp|A7YWD2|IPO13_BOVIN Importin-13 OS=Bos taurus GN=IPO13 PE=2 SV=1 Back     alignment and function description
>sp|O94829|IPO13_HUMAN Importin-13 OS=Homo sapiens GN=IPO13 PE=1 SV=3 Back     alignment and function description
>sp|Q9JM04|IPO13_RAT Importin-13 OS=Rattus norvegicus GN=Ipo13 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query843
225457174 960 PREDICTED: transportin-3 [Vitis vinifera 0.978 0.859 0.820 0.0
255540833 967 transportin, putative [Ricinus communis] 0.978 0.853 0.802 0.0
449440732 968 PREDICTED: transportin-3-like [Cucumis s 0.978 0.852 0.795 0.0
356562787 960 PREDICTED: transportin-3-like isoform 1 0.978 0.859 0.799 0.0
356512770 959 PREDICTED: transportin-3-like isoform 1 0.977 0.859 0.797 0.0
356562789 968 PREDICTED: transportin-3-like isoform 2 0.978 0.852 0.792 0.0
356512772 967 PREDICTED: transportin-3-like isoform 2 0.977 0.852 0.789 0.0
297797229 961 hypothetical protein ARALYDRAFT_496440 [ 0.972 0.853 0.729 0.0
42568712 958 armadillo/beta-catenin-like repeat-conta 0.972 0.855 0.726 0.0
222613008 962 hypothetical protein OsJ_31893 [Oryza sa 0.970 0.850 0.618 0.0
>gi|225457174|ref|XP_002283854.1| PREDICTED: transportin-3 [Vitis vinifera] gi|297733855|emb|CBI15102.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1397 bits (3616), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 692/843 (82%), Positives = 755/843 (89%), Gaps = 18/843 (2%)

Query: 1   MNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINE 60
           MNSHPEF+PGFLELL VLPEEVFNYKIAARPERRRQFEKELTS+MEVAL+ LTACL+INE
Sbjct: 134 MNSHPEFIPGFLELLMVLPEEVFNYKIAARPERRRQFEKELTSEMEVALNILTACLNINE 193

Query: 61  LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAG 120
           LKEQVLEAFASWLRL+H IPG+VLASHPLVLTALSSL+SE+LSEASVNV+SELIHY+ AG
Sbjct: 194 LKEQVLEAFASWLRLRHGIPGAVLASHPLVLTALSSLNSELLSEASVNVVSELIHYTTAG 253

Query: 121 SSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDE 180
           SSGGA+V +PLIQVIVPQ+M+LK  L DSSKDEEDVKAI RLFADMGDSYVELIATGSDE
Sbjct: 254 SSGGASVQIPLIQVIVPQVMNLKVQLRDSSKDEEDVKAIGRLFADMGDSYVELIATGSDE 313

Query: 181 SMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVF 240
           SMLIVHALLEVASHPEYDIASMTFNFWH+LQV LTKRD+Y+SFGNEAS EAER+RRLQVF
Sbjct: 314 SMLIVHALLEVASHPEYDIASMTFNFWHNLQVNLTKRDAYLSFGNEASIEAERNRRLQVF 373

Query: 241 RSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVL 300
           RS+YESLVSLVS RV+YP+DYQDLS EDLK+FK TRY                 AVADVL
Sbjct: 374 RSSYESLVSLVSSRVRYPEDYQDLSYEDLKDFKQTRY-----------------AVADVL 416

Query: 301 IDAASVLGGDATLKILYIKFVEGVACCGNK-HNEWRPAEAALFCIRAISTYVSVVEAEVM 359
           IDAASVLGG+ATLKILY+K VE VA CGN+ HNEWRPAEAAL+CIRAIS YVSVVEAEVM
Sbjct: 417 IDAASVLGGEATLKILYMKLVEAVASCGNEEHNEWRPAEAALYCIRAISNYVSVVEAEVM 476

Query: 360 PQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAA 419
           PQVM +LPKLP QPQLLQTVCLTIGAYSKW DAA    SI  SV+ IL SGMS SED+AA
Sbjct: 477 PQVMNMLPKLPHQPQLLQTVCLTIGAYSKWLDAAPGGLSIFPSVIDILMSGMSISEDSAA 536

Query: 420 AAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 479
           AAALAF+HICDDCRKKLCG LDGL+++Y  AVNGEG+ KV AEDSLHLVEALSMVITELP
Sbjct: 537 AAALAFKHICDDCRKKLCGSLDGLFHIYHRAVNGEGNFKVPAEDSLHLVEALSMVITELP 596

Query: 480 QVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVAD 539
              AKKALE LCLPVVT LQE++NQGPEIL KK  R+ TVHIDRFAYIFRYVNHPEAVAD
Sbjct: 597 PDHAKKALEALCLPVVTSLQEVVNQGPEILDKKVAREFTVHIDRFAYIFRYVNHPEAVAD 656

Query: 540 AIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQ 599
           AIQRLWPIFKAIFD+RAWDMRTMESLCRACKYAVRTS RFMGITIGA+LEEIQGLYQ H 
Sbjct: 657 AIQRLWPIFKAIFDVRAWDMRTMESLCRACKYAVRTSGRFMGITIGAMLEEIQGLYQLHH 716

Query: 600 QPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLA 659
           QPCFLYLSSEVIKIFGSDPSCA+YL NLIEALF  TTCLL +I EFT+RPD+ADDCFLLA
Sbjct: 717 QPCFLYLSSEVIKIFGSDPSCANYLKNLIEALFSHTTCLLKNIREFTARPDIADDCFLLA 776

Query: 660 SRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLS 719
           SRCIRYCPQLFIPS+VFPSLVDCSMIG+TVQHREASNSILTFLSDIFDLAK+  GE++ S
Sbjct: 777 SRCIRYCPQLFIPSAVFPSLVDCSMIGVTVQHREASNSILTFLSDIFDLAKTSPGEQYQS 836

Query: 720 VRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIP 779
           +RD+VIIPRGASITRILIA LTGALPSSRLETVTYALLALTRAYG++++EWAK+ +SL+P
Sbjct: 837 IRDTVIIPRGASITRILIACLTGALPSSRLETVTYALLALTRAYGMKAVEWAKDCISLVP 896

Query: 780 LTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGALKPLELNR 839
           LTA+ EVER+RFLQ LS  A+G D+N     +EELSDVCRRNRTVQEIVQGAL+P ELN 
Sbjct: 897 LTAVTEVERTRFLQTLSNVATGADINTLTVSMEELSDVCRRNRTVQEIVQGALRPHELNL 956

Query: 840 VPV 842
            PV
Sbjct: 957 APV 959

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255540833|ref|XP_002511481.1| transportin, putative [Ricinus communis] gi|223550596|gb|EEF52083.1| transportin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449440732|ref|XP_004138138.1| PREDICTED: transportin-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356562787|ref|XP_003549650.1| PREDICTED: transportin-3-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356512770|ref|XP_003525089.1| PREDICTED: transportin-3-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356562789|ref|XP_003549651.1| PREDICTED: transportin-3-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356512772|ref|XP_003525090.1| PREDICTED: transportin-3-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|297797229|ref|XP_002866499.1| hypothetical protein ARALYDRAFT_496440 [Arabidopsis lyrata subsp. lyrata] gi|297312334|gb|EFH42758.1| hypothetical protein ARALYDRAFT_496440 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42568712|ref|NP_201066.2| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|27311605|gb|AAO00768.1| unknown protein [Arabidopsis thaliana] gi|34365727|gb|AAQ65175.1| At5g62590 [Arabidopsis thaliana] gi|110739500|dbj|BAF01659.1| hypothetical protein [Arabidopsis thaliana] gi|110741326|dbj|BAF02213.1| hypothetical protein [Arabidopsis thaliana] gi|332010246|gb|AED97629.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|222613008|gb|EEE51140.1| hypothetical protein OsJ_31893 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query843
TAIR|locus:2154159958 MOS14 "AT5G62600" [Arabidopsis 0.704 0.620 0.642 3.70000000001e-313
FB|FBgn0031456932 Trn-SR "Transportin-Serine/Arg 0.599 0.541 0.246 8.3e-46
UNIPROTKB|A5D7C4923 TNPO3 "TNPO3 protein" [Bos tau 0.552 0.504 0.247 2.7e-45
UNIPROTKB|E9PFH4857 TNPO3 "Transportin-3" [Homo sa 0.552 0.543 0.241 3.7e-45
UNIPROTKB|Q9Y5L0923 TNPO3 "Transportin-3" [Homo sa 0.552 0.504 0.241 5.2e-45
ZFIN|ZDB-GENE-040426-708923 tnpo3 "transportin 3" [Danio r 0.523 0.477 0.246 7.7e-45
MGI|MGI:1196412923 Tnpo3 "transportin 3" [Mus mus 0.552 0.504 0.239 8.3e-45
RGD|1308938929 Tnpo3 "transportin 3" [Rattus 0.552 0.501 0.241 4e-44
UNIPROTKB|C9J7E5957 TNPO3 "Uncharacterized protein 0.449 0.396 0.254 7.8e-43
UNIPROTKB|F1SMQ0921 TNPO3 "Uncharacterized protein 0.552 0.505 0.236 1.4e-42
TAIR|locus:2154159 MOS14 "AT5G62600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1911 (677.8 bits), Expect = 3.7e-313, Sum P(2) = 3.7e-313
 Identities = 392/610 (64%), Positives = 453/610 (74%)

Query:   241 RSAYESLVSLVSFRVQ-------YPQDYQDLSLEDLKEFKHTRY--DLACCSSSTLTESV 291
             R +Y SL S  S  V+       +   YQ  SL  L  F+  +Y  D    S   L E  
Sbjct:   350 RESYSSLGSEASIEVERNRRLHIFQPAYQ--SLVSLVGFR-VQYPEDYQGLSYEDLKEFK 406

Query:   292 ML-IAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTY 350
                 AVADVLIDAA +LGGD TLKILY+K +E  A  GN   +WRPAEA LFCI AIS Y
Sbjct:   407 QTRYAVADVLIDAALILGGDTTLKILYMKLLEANAQTGNNFQDWRPAEAILFCIWAISNY 466

Query:   351 VSVVEAEVMPQVMAXXXXXXXXXXXXXTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 410
             VSVVEAEVMPQVMA             T CL +GAYSKW +AA +  SIL S++ IL SG
Sbjct:   467 VSVVEAEVMPQVMALLQNLPQQAQLLQTACLLVGAYSKWLNAAPASVSILPSIIRILMSG 526

Query:   411 MSTSEDTXXXXXXXFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEA 470
             M TSED        FRH CDDCRK LCGY + L+N+Y  A+NG G  KVSAEDSL+LVEA
Sbjct:   527 MGTSEDCAAAAALAFRHTCDDCRKNLCGYFEDLFNIYCMAINGGGGYKVSAEDSLNLVEA 586

Query:   471 LSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 530
             L MV+TELP   AK ALE LC    +PL+E      E L+KKH R+LTVHIDRFA++FRY
Sbjct:   587 LGMVVTELPLDQAKGALEKLCFSAASPLEEAAK---EDLEKKHARELTVHIDRFAFLFRY 643

Query:   531 VNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEE 590
             VNHPEAVA  I + W IF+ IFD R WDMRTMESLCRACKYAVRTS R++  TIG +LE+
Sbjct:   644 VNHPEAVAAEINKHWAIFRVIFDARPWDMRTMESLCRACKYAVRTSGRYIIDTIGEMLEK 703

Query:   591 IQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPD 650
             IQ  YQQH QPCFLYLSSEVIKIFGSDPSCA YL NLIE LF  TTCL+TSI+E T+RPD
Sbjct:   704 IQFHYQQHHQPCFLYLSSEVIKIFGSDPSCAVYLKNLIETLFAHTTCLMTSIKEVTARPD 763

Query:   651 VADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAK 710
             +ADDCFLLASRC+RYCP LFIPS +FP+LV+C+MIGITVQHREA +SILTFL+DIFDL K
Sbjct:   764 IADDCFLLASRCLRYCPHLFIPSPIFPALVNCAMIGITVQHREACHSILTFLTDIFDLEK 823

Query:   711 SCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEW 770
             S   E+F+ +RD++IIPRGA+ITRILIASL GALPSSRL+TVTY+LLALTR Y ++++ W
Sbjct:   824 SVNEEQFVRIRDNIIIPRGATITRILIASLAGALPSSRLDTVTYSLLALTRTYRLQAVSW 883

Query:   771 AKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQG 830
             AKESVSLIP TAL E E ++FLQALS+ A G DVN+ +  VEELSDVCRRNRTVQE+VQ 
Sbjct:   884 AKESVSLIPRTALTETESTKFLQALSDIAYGADVNSLIGQVEELSDVCRRNRTVQELVQA 943

Query:   831 ALKPLELNRV 840
             ALKPLELN V
Sbjct:   944 ALKPLELNLV 953
GO:0005634 "nucleus" evidence=IDA
GO:0006606 "protein import into nucleus" evidence=IMP
GO:0043484 "regulation of RNA splicing" evidence=IMP
FB|FBgn0031456 Trn-SR "Transportin-Serine/Arginine rich" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7C4 TNPO3 "TNPO3 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E9PFH4 TNPO3 "Transportin-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y5L0 TNPO3 "Transportin-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-708 tnpo3 "transportin 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1196412 Tnpo3 "transportin 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1308938 Tnpo3 "transportin 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|C9J7E5 TNPO3 "Uncharacterized protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SMQ0 TNPO3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query843
pfam08389147 pfam08389, Xpo1, Exportin 1-like protein 2e-12
>gnl|CDD|219817 pfam08389, Xpo1, Exportin 1-like protein Back     alignment and domain information 
 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 9/116 (7%)

Query: 1   MNSHPEFVPGFLELLTVLPEEVFNY-KIAARPERRRQFEKELTSQMEVALSTLTACLHIN 59
           ++S P      L +L VLPEE+F++ +     +RR + +  L SQM   L  L   L  +
Sbjct: 35  LSSSPSGCELLLRILKVLPEEIFDFSRTPLTQQRRNRLKDLLRSQMPQILELLLQILENS 94

Query: 60  -----ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVI 110
                EL    L+   SWL     IP  ++ + PL+      L    L EA+V  +
Sbjct: 95  VSAHSELLSATLKCLGSWLS---WIPIGLILNDPLLNLLFQLLSDPDLREAAVECL 147

The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. Length = 147

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 843
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 100.0
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 100.0
KOG2081559 consensus Nuclear transport regulator [Intracellul 100.0
COG51011053 CRM1 Importin beta-related nuclear transport recep 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.97
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.96
KOG20201041 consensus Nuclear transport receptor CRM1/MSN5 (im 99.94
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 99.89
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 99.78
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 99.44
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.37
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 99.36
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.15
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 99.11
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 99.05
KOG22741005 consensus Predicted importin 9 [Intracellular traf 98.78
KOG1824 1233 consensus TATA-binding protein-interacting protein 98.55
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 98.16
KOG1242569 consensus Protein containing adaptin N-terminal re 98.1
KOG18241233 consensus TATA-binding protein-interacting protein 97.91
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.9
KOG14101082 consensus Nuclear transport receptor RanBP16 (impo 97.89
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 97.84
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 97.73
KOG0212 675 consensus Uncharacterized conserved protein [Funct 97.53
KOG4541748 consensus Nuclear transport receptor exportin 4 (i 97.52
COG5656970 SXM1 Importin, protein involved in nuclear import 97.47
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 97.43
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 96.61
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 96.01
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 95.99
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 95.93
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 95.92
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 95.82
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 95.61
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 95.54
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 95.52
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 95.23
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 95.19
PTZ00429 746 beta-adaptin; Provisional 95.03
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 94.99
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 94.9
KOG0213 1172 consensus Splicing factor 3b, subunit 1 [RNA proce 94.8
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 94.51
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 94.5
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 94.38
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 94.35
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 94.32
PF14500262 MMS19_N: Dos2-interacting transcription regulator 94.18
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 94.04
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 94.02
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 93.68
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 93.21
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 92.72
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 92.68
KOG1242569 consensus Protein containing adaptin N-terminal re 92.6
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 92.43
KOG2081 559 consensus Nuclear transport regulator [Intracellul 92.0
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 91.76
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 91.61
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 90.51
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 89.29
PTZ00429746 beta-adaptin; Provisional 89.23
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 88.55
PRK09687280 putative lyase; Provisional 87.72
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 87.49
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 87.41
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 86.51
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 85.85
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 85.27
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 85.18
PF08167165 RIX1: rRNA processing/ribosome biogenesis 83.16
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 83.04
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 80.93
KOG2956516 consensus CLIP-associating protein [General functi 80.84
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=8.5e-78  Score=659.77  Aligned_cols=763  Identities=18%  Similarity=0.307  Sum_probs=627.0

Q ss_pred             hHHHHHHhhhccccccCccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhch----------hhHHHHHHHHHHHHhcCC
Q 003155            8 VPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----------ELKEQVLEAFASWLRLKH   77 (843)
Q Consensus         8 ~~~~L~~L~~lpEE~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~----------~~~~~~L~cl~sWi~~~~   77 (843)
                      -.++|+.|+.+|||..+.++  +..||..++.+|.+....|.+++..+++..          -.+..+++|..+|+++. 
T Consensus       147 ~~~~Le~Ls~~p~e~q~~~l--~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i-  223 (982)
T KOG2022|consen  147 CEILLEVLSFMPAEFQHVTL--PLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI-  223 (982)
T ss_pred             HHHHHHHhccCcHhhhhccc--hhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh-
Confidence            46889999999999998776  477889999999999999999999888752          26678999999999963 


Q ss_pred             CCCCcccccchhHHHHHhhcC-----------------CCcchHHHHHHHHHHHhhhc-cCCCCCccCcHhHHHHHHHHH
Q 003155           78 RIPGSVLASHPLVLTALSSLH-----------------SEILSEASVNVISELIHYSA-AGSSGGATVNMPLIQVIVPQI  139 (843)
Q Consensus        78 ~i~~~~l~~~~ll~~~~~~L~-----------------~~~~~~~A~~~l~eii~~~~-~~~~~~~~~~~~li~~l~~~~  139 (843)
                      +.+.  .....++..++..+.                 ...+.+..+......+.... .++++++.+-.++...+...+
T Consensus       224 ~~~~--~~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~  301 (982)
T KOG2022|consen  224 SLTG--MDCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEV  301 (982)
T ss_pred             cccc--ccHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHH
Confidence            2332  222344444554444                 11222323333332222111 122221111111112212222


Q ss_pred             HhhHHHHhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCC------chHHHHHHHHHhhccCCC-----cchhhhhHHHHH
Q 003155          140 MSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGS------DESMLIVHALLEVASHPE-----YDIASMTFNFWH  208 (843)
Q Consensus       140 ~~l~~~l~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~------~~~~~ll~~ll~~~~~~~-----~~vs~~~~~FW~  208 (843)
                      ....+...+++..+|....+++++++.+|++.+.+.++.      +.+.++++.|+.|++.|+     +.+|..++.||+
T Consensus       302 ~~~~~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~  381 (982)
T KOG2022|consen  302 SGKIQEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWY  381 (982)
T ss_pred             HHHHHHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHH
Confidence            222222322333367788999999999999999987642      236789999999999995     679999999999


Q ss_pred             HHHHHhcccccccccCcccchHHHHHHHHHHHH-HHHHHHHHHHHhhccCCCC--CCCCChhhhHHhHhhhccccccCCC
Q 003155          209 SLQVILTKRDSYISFGNEASAEAERSRRLQVFR-SAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSS  285 (843)
Q Consensus       209 ~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~k~~~p~d--~~~~~~e~~e~f~~~R~~~~~~~~~  285 (843)
                      +|+|++...      .++..     +.....++ |+|.+|++++++|+.+|++  +..|+.|++|.|++||+|       
T Consensus       382 tL~dei~~~------~~e~~-----~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~d-------  443 (982)
T KOG2022|consen  382 TLQDEIMQT------INETQ-----QIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKD-------  443 (982)
T ss_pred             HHHHHHHHh------hhccC-----CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHH-------
Confidence            999987632      11110     11223455 9999999999999999984  678999999999999999       


Q ss_pred             cchhhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccccchHHHhhh
Q 003155          286 TLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMAL  365 (843)
Q Consensus       286 ~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~  365 (843)
                                ++|+++++|+++| +.++..+.+.+.+.+..+...+.+|.+.|+|+|++.++++.+..++++.++.+++.
T Consensus       444 ----------iSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~  512 (982)
T KOG2022|consen  444 ----------ISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFET  512 (982)
T ss_pred             ----------HHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHh
Confidence                      9999999999999 78999999999998865433466799999999999999999999999999999999


Q ss_pred             ccCCC---CcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhcCCHHH
Q 003155          366 LPKLP---QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDG  442 (843)
Q Consensus       366 l~~lp---~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~~v~~~A~~a~~~lc~~c~~~l~~~~~~  442 (843)
                      ..+.+   .+|.+.+|+..++|.|+.|+.+||.   ++.+.++.+++++++++ ....|..++++||++|+.+|.||+++
T Consensus       513 ~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~---~ln~sl~~L~~~Lh~sk-~s~q~i~tl~tlC~~C~~~L~py~d~  588 (982)
T KOG2022|consen  513 SASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPM---YLNPSLPLLFQGLHNSK-ESEQAISTLKTLCETCPESLDPYADQ  588 (982)
T ss_pred             ccccccccCChhHHHHHHHHHHHHHHHHhcCCc---ccCchHHHHHHHhcCch-HHHHHHHHHHHHHHhhhhhCchHHHH
Confidence            87664   2799999999999999999999997   99999999999999887 78888889999999999999999999


Q ss_pred             HHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHH
Q 003155          443 LYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHID  522 (843)
Q Consensus       443 li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~  522 (843)
                      ++..+..++..   .+..+.++.+++.+||+|.+.+.+|++.+++.++++|+++.++.++....+.+++  ....+..+.
T Consensus       589 ~~a~~~e~l~~---~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~--~l~~~~~l~  663 (982)
T KOG2022|consen  589 FSAVCYEVLNK---SNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQEN--HLRIAFQLN  663 (982)
T ss_pred             HHHHHHHHhcc---cccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHH--HHHHHHHHH
Confidence            99999999875   2567899999999999999999999999999999999999999998755443221  122445589


Q ss_pred             HHHHhhhccCCc------------------chHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhh-hhh
Q 003155          523 RFAYIFRYVNHP------------------EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFM-GIT  583 (843)
Q Consensus       523 ~l~~~~~~~~~~------------------~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~-~p~  583 (843)
                      ++++++.++..+                  -|++.+.++++|++..++..|.++.+++|.+|...+++++..++.+ .|+
T Consensus       664 ~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~  743 (982)
T KOG2022|consen  664 TISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPM  743 (982)
T ss_pred             HHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhh
Confidence            999999987531                  1677889999999999999999999999999999999999988777 899


Q ss_pred             HHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHH
Q 003155          584 IGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCI  663 (843)
Q Consensus       584 l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~  663 (843)
                      +|.+..+++. |.+.+...-+.+..+++..+..++.+.+.+...+...+++++-++.+. .+.++||+...||+|+..++
T Consensus       744 l~~l~~Fi~r-~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~-~f~n~~Di~~~~~~~v~~il  821 (982)
T KOG2022|consen  744 LPSLCPFIVR-FLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQH-PFSNQPDIYLQLIGFVRQIL  821 (982)
T ss_pred             HHHHHHHHHH-hccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhcc-CCCCCchHHHHHHHHHHHHH
Confidence            9999999998 998888888999999999988888899999999999999999888753 37999999999999999999


Q ss_pred             hhCCCcccC-cCCcHHHHH-HHHHhccCCChhHHHHHHHHHHHhhccccCCCchhhHHHHHHHHhhhhHHHHHHHHHHcc
Q 003155          664 RYCPQLFIP-SSVFPSLVD-CSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLT  741 (843)
Q Consensus       664 ~~~p~~~~~-s~~l~~i~~-~~~~~l~~~e~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~  741 (843)
                      ++.|+.+.+ ...+++++. |+..+++.+|+.+++++++||+.++...++..    ...+.+++.+.|+.++.+++.|++
T Consensus       822 kk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~~----~~tv~~~V~~~G~~Li~~im~~vg  897 (982)
T KOG2022|consen  822 KKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATSHD----LVTVTSVVAEIGPILIYAIMRGVG  897 (982)
T ss_pred             HhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcccch----hHHHHHHHHhcchHHHHHHHHHhc
Confidence            999999988 445776665 99999999999999999999999997554311    345889999999999999999999


Q ss_pred             cCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHHh--hCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHh
Q 003155          742 GALPSSRLETVTYALLALTRAYGVRSLEWAKESVS--LIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCR  819 (843)
Q Consensus       742 ~~~p~s~~~~~a~iL~~l~~~~~~~~~~wl~~~l~--~~P~~~~t~~~~~~f~~~l~~~~~~~~~~~~~~~~~~F~~~~r  819 (843)
                      |..+||.++.++|+|++++++|+.+++.|++++++  +||+.++|+++|++|+++|+++|  .|+|.+++.+.+|+..||
T Consensus       898 g~~~RS~ld~~aDIL~al~~k~~se~r~wl~~~lq~~gfPs~~~s~e~k~rf~t~llrer--~n~R~~k~~il~~~L~~~  975 (982)
T KOG2022|consen  898 GEASRSTLDALADILLALNAKFFSETRTWLKAVLQIPGFPSAGVSNEIKSRFVTSLLRER--GNKRNFKQQILEFNLACT  975 (982)
T ss_pred             CcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHH--hcHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999994  99999999999999999999986  688999999999999999


Q ss_pred             hh
Q 003155          820 RN  821 (843)
Q Consensus       820 ~~  821 (843)
                      |.
T Consensus       976 ~l  977 (982)
T KOG2022|consen  976 GL  977 (982)
T ss_pred             CC
Confidence            96

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query843
2x1g_F971 Crystal Structure Of Importin13 - Mago-Y14 Complex 4e-17
2xwu_B963 Crystal Structure Of Importin 13 - Ubc9 Complex Len 4e-16
2x19_B963 Crystal Structure Of Importin13 - Rangtp Complex Le 2e-14
>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex Length = 971 Back     alignment and structure 
Iteration: 1

 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 127/637 (19%), Positives = 251/637 (39%), Gaps = 76/637 (11%)
Query: 184 IVHALLEVASHP-----EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQ 238
           IV  +L     P     E   ++M   FW+ LQ      D   +  N+     ++ +  +
Sbjct: 349 IVQEILHCTDKPGIYPVEESCSTMALAFWYMLQ------DEVFAMSNDE----QKHKCWE 398
Query: 239 VFRSAYESLVSLVSFRVQYPQDYQ--DLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAV 296
             +  Y  L  ++  + + P +      S +DL+ F+  R D                 +
Sbjct: 399 YIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQD-----------------I 441
Query: 297 ADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEA 356
           +D  +    VL  D  L+IL     E +A        W   EA ++  ++++ +    E 
Sbjct: 442 SDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK 500
Query: 357 EVMPQVM---AXXXXXXXXXXXXXTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST 413
             +P++M   A             T   T+G+Y  W      +P+ +   +++L  G+++
Sbjct: 501 RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWL---MENPAYIPPAINLLVRGLNS 557
Query: 414 SEDTXXXXXXXFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSM 473
           S           + +C DC+ +L  Y D L N    ++N  G +K S  DS+ L+ ++  
Sbjct: 558 S--MSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNT-GRMKNS--DSVRLMFSIGK 612
Query: 474 VITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHP--RDLTV-HIDRFAYIFRY 530
           +++ L   +  K L+++  P    LQ I          K P  R  T+  ++  + +F  
Sbjct: 613 LMSLLRPEEIPKYLDIIVSPCFEELQAICQAD-----SKTPAARIRTIFRLNMISTLFSS 667
Query: 531 VN---------HP--EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRF 579
           +N          P  + V   +QR  PIFK I ++   ++  +E+ C A K+A+   +  
Sbjct: 668 LNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSS 727
Query: 580 MGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLL 639
               +  +   I   +Q       L +S   I +F  D  C   +  L+    + +  L 
Sbjct: 728 FQPMLQDLCLFIVASFQTRCCAPTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLF 787
Query: 640 TSIEE--FTSRPDVADDCFLLASRCIRYCPQLFIPSSV-FPSLVDCSMIGITVQHREASN 696
            S  E  F++  D  +  F   ++ I+  PQ+    ++ +  LV  +  G+T+    A  
Sbjct: 788 ESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIR 847
Query: 697 SILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYAL 756
           + + FL+     +++       +    V++  G       +  +    P S+++     L
Sbjct: 848 NSIQFLTHFVMQSRN------HAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADIL 901
Query: 757 LALTRAYGVRSLEWAKESVSL--IPLTALAEVERSRF 791
           LA+ R Y      W K  +S    P   + + +++R+
Sbjct: 902 LAMNRKYAAEMAVWMKSLMSTPNFPTQLITDADKTRY 938
>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex Length = 963 Back     alignment and structure
>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex Length = 963 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query843
2x19_B963 Importin-13; nuclear transport, protein transport; 1e-106
2x1g_F971 Cadmus; transport protein, developmental protein, 1e-103
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 2e-71
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 5e-57
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 7e-44
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 2e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 5e-13
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 1e-12
1qgr_A876 Protein (importin beta subunit); transport recepto 3e-08
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 2e-04
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 9e-04
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 Back     alignment and structure
 Score =  347 bits (890), Expect = e-106
 Identities = 156/854 (18%), Positives = 336/854 (39%), Gaps = 92/854 (10%)

Query: 1   MNSHPEFVPGFLELLTVLPEEVFNYKI--AARPERRRQFEKELTSQMEVALSTLTACLHI 58
                      LELLTVLPEE    ++    +   R     E  +   +    L      
Sbjct: 156 PVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSP 215

Query: 59  NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSA 118
           + ++++VL+ F+SW++L+  +         L+  A ++L    L ++SV  I   I    
Sbjct: 216 SCVRQKVLKCFSSWVQLEVPLQ----DCEALIQAAFAALQDSELFDSSVEAIVNAI---- 267

Query: 119 AGSSGGATVNMPLIQVIVPQIMSLKAHLTDS--SKDEEDVKAIARLFADMGDSYVELIAT 176
             S   A   +  +  ++P ++ L+  L  +  + D E    I R+   +G+++   +  
Sbjct: 268 --SQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLD 325

Query: 177 GSDES---MLIVHALLEVASHPEY-----DIASMTFNFWHSLQVILTKRDSYISFGNEAS 228
             +     + +V+ ++     P +       +S+T  FW++LQ  +   ++         
Sbjct: 326 QVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAE-------- 377

Query: 229 AEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSST 286
              +++   QV+R  Y  LV ++  + Q+P D  Y   S ++ ++F+  R D        
Sbjct: 378 ---KQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVD-------- 426

Query: 287 LTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRA 346
                    ++D L+    +LG +  L  LY K    +     +   W+  EA L+  ++
Sbjct: 427 ---------ISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSS-EEPYSWQHTEALLYGFQS 475

Query: 347 ISTYVSVVEAEVMPQVMALLPKLPQQ-PQLLQTVCLTIGAYSKWFDAASSDPSILASVLS 405
           I+  + V  ++V+P ++ L+P++     QL  TV  TIGA S+W    +  P ++ SVL 
Sbjct: 476 IAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL---ADHPVMINSVLP 532

Query: 406 ILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSL 465
           ++   +   E  + ++    + IC +C+  L  Y   +  V +  +  +          +
Sbjct: 533 LVLHALGNPEL-SVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQ---IHKTSQCM 588

Query: 466 HLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFA 525
            L++AL  +++ L   +  K L  L  P +  L+++  + P    K     +   +    
Sbjct: 589 WLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLF 648

Query: 526 YIFRYVNH-----------------PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRA 568
                 +H                 P  V   +Q+++ + + +      D + +E++C  
Sbjct: 649 TTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAI 708

Query: 569 CKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLI 628
            + +V+T        +  + E +  +Y    Q   L L+ +++ IF  +P+    +  L 
Sbjct: 709 FEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALF 768

Query: 629 EALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSV-FPSLVDCSMIGI 687
             +   T  L    +     PD+ D    L ++ ++  P LF+   +   ++  C+++ +
Sbjct: 769 LLVTSVTLTLFQ--QGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLAL 826

Query: 688 TVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSS 747
                    +   F +++            +     V+   G  +   ++ ++ G    S
Sbjct: 827 KFPEAPTVKASCGFFTELLPRCGE------VESVGKVVQEDGRMLLIAVLEAIGGQASRS 880

Query: 748 RLETVTYALLALTRAYGVRSLEWAKESVSL--IPLTALAEVERSRFLQALSEAASGVDVN 805
            ++     L AL +        W KE++     P   L+  ++  F Q +       +  
Sbjct: 881 LMDCFADILFALNKHCFSLLSMWIKEALQPPGFPSARLSPEQKDTFSQQILRERV--NKR 938

Query: 806 AAMAPVEELSDVCR 819
                V+E + +CR
Sbjct: 939 RVKEMVKEFTLLCR 952
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query843
2x1g_F971 Cadmus; transport protein, developmental protein, 100.0
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 100.0
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 100.0
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 100.0
2x19_B963 Importin-13; nuclear transport, protein transport; 100.0
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 100.0
3a6p_A1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 100.0
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.95
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.94
1qgr_A876 Protein (importin beta subunit); transport recepto 99.92
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 99.91
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 99.83
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.77
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.53
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.53
1qgr_A876 Protein (importin beta subunit); transport recepto 99.53
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.48
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.39
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.27
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 98.9
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 98.76
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.28
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.24
2x1g_F971 Cadmus; transport protein, developmental protein, 98.0
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.95
2x19_B 963 Importin-13; nuclear transport, protein transport; 97.81
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.74
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 97.73
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 97.67
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 97.63
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.55
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 97.47
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 97.33
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.29
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 97.24
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.21
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 97.18
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 97.12
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 97.09
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 96.82
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 96.73
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 96.71
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 96.51
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 96.4
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 95.91
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 95.75
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 95.28
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 95.02
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 94.73
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 94.68
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 93.86
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 93.8
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 93.77
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 93.6
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 93.41
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 93.09
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 92.08
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 91.56
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 91.28
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 91.07
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 90.27
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 90.22
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 89.12
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 88.7
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 87.1
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 84.72
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 84.5
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 84.33
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 80.61
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
Probab=100.00  E-value=4.5e-76  Score=734.92  Aligned_cols=758  Identities=20%  Similarity=0.332  Sum_probs=631.7

Q ss_pred             CCchHHHHHHhhhccccccCccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhc---h-------hhHHHHHHHHHHHHh
Q 003155            5 PEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHI---N-------ELKEQVLEAFASWLR   74 (843)
Q Consensus         5 ~~~~~~~L~~L~~lpEE~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~---~-------~~~~~~L~cl~sWi~   74 (843)
                      +......|++|+.+|||+.+.+   +..||..+++.+....+.|++++.++++.   +       ++...+++|+.+|+.
T Consensus       142 ~~~~~~~l~iL~~l~EEi~~~~---~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~  218 (971)
T 2x1g_F          142 DVQLWIMLEVLTAIPEEAQVIH---TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIK  218 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCC---CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHhccC---cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHh
Confidence            4567789999999999988554   46788889999999999999999988864   2       588999999999999


Q ss_pred             cCCCCCCcccccchhHHHHHhhc------------------CCCcchHHHHHHHHHHHhhhccCCCCCccCcHhHHHHHH
Q 003155           75 LKHRIPGSVLASHPLVLTALSSL------------------HSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIV  136 (843)
Q Consensus        75 ~~~~i~~~~l~~~~ll~~~~~~L------------------~~~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~~l~  136 (843)
                      ++ ++|.+  ...++++.+|+ |                  .+++++++|++|+.++++....      .+..+++..++
T Consensus       219 ~~-~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~------~~~~~~~~~l~  288 (971)
T 2x1g_F          219 NI-GYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDC------HNYPKTAFVLI  288 (971)
T ss_dssp             HS-CCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGG------GGCHHHHHHHH
T ss_pred             hC-CcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccc------cccHHHHHHHH
Confidence            63 46666  46789999988 6                  4678999999999999986432      14567888889


Q ss_pred             HHHHhhHHHHhh--ccCC---HHHHHHHHHHHHHHhhHHHHHHH----c----CCchHHHHHHHHHhhccC----C-Ccc
Q 003155          137 PQIMSLKAHLTD--SSKD---EEDVKAIARLFADMGDSYVELIA----T----GSDESMLIVHALLEVASH----P-EYD  198 (843)
Q Consensus       137 ~~~~~l~~~l~~--~~~d---~~~~~~l~~l~~~~~e~~~~~l~----~----~~~~~~~ll~~ll~~~~~----~-~~~  198 (843)
                      |.++++.+.+..  .++|   ++....+|++++.+++.+...+.    +    .++++..+++.|+.++.+    + +++
T Consensus       289 ~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~  368 (971)
T 2x1g_F          289 KMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEES  368 (971)
T ss_dssp             HHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCT
T ss_pred             HHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchh
Confidence            988887665532  2344   37888999999999999988776    3    123567899999999987    3 789


Q ss_pred             hhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--CCCCChhhhHHhHhhh
Q 003155          199 IASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTR  276 (843)
Q Consensus       199 vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d--~~~~~~e~~e~f~~~R  276 (843)
                      ++..+++||+.+++......      .+    .........++|++.+++++++.|+.||+|  +++|+.+|+++|+.||
T Consensus       369 v~~~~l~fw~~l~~~~~~~~------~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R  438 (971)
T 2x1g_F          369 CSTMALAFWYMLQDEVFAMS------ND----EQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYR  438 (971)
T ss_dssp             THHHHHHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcc------cc----cchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHH
Confidence            99999999999998543211      00    001234567899999999999999999985  4567888889999999


Q ss_pred             ccccccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccc
Q 003155          277 YDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEA  356 (843)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~  356 (843)
                      ++                 ++|++.+++.++| +.+++.+++.+.+.+.+....+.+|+.+||++|++++|++++....+
T Consensus       439 ~~-----------------~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~  500 (971)
T 2x1g_F          439 QD-----------------ISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK  500 (971)
T ss_dssp             HH-----------------HHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------
T ss_pred             HH-----------------HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh
Confidence            99                 9999999999999 78999999988887743111147899999999999999999998877


Q ss_pred             cchHHHhhhccCCC-C--cHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 003155          357 EVMPQVMALLPKLP-Q--QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCR  433 (843)
Q Consensus       357 ~~l~~l~~~l~~lp-~--~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~~v~~~A~~a~~~lc~~c~  433 (843)
                      +.++++++.+++++ .  ||.||.++|+++|+|++|+..||+   ++++++++++++++ ++ |+.+||+||.+||++|+
T Consensus       501 ~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~---~l~~vl~~l~~~l~-~~-v~~~A~~al~~l~~~~~  575 (971)
T 2x1g_F          501 RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA---YIPPAINLLVRGLN-SS-MSAQATLGLKELCRDCQ  575 (971)
T ss_dssp             CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-------CHHHHHHHHHHHHH-SS-CHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHhC-hH-HHHHHHHHHHHHHHHHH
Confidence            88999998776666 3  899999999999999999999986   99999999999995 66 99999999999999999


Q ss_pred             hhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccC
Q 003155          434 KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKH  513 (843)
Q Consensus       434 ~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~  513 (843)
                      ..+.||++.|++.+.+++..+   +++.+++..+++++|.+++++|+++..+++..++.|+++.++++.+....+.  ..
T Consensus       576 ~~l~p~~~~ll~~l~~~l~~~---~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~--~~  650 (971)
T 2x1g_F          576 LQLKPYADPLLNACHASLNTG---RMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTP--AA  650 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHST---TSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CH--HH
T ss_pred             HhccccHHHHHHHHHHHHcCC---CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh--hh
Confidence            999999999999999998752   4678999999999999999998888999999999999999999876542111  11


Q ss_pred             chhhHHHHHHHHHhhhccCC-----------cchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhh
Q 003155          514 PRDLTVHIDRFAYIFRYVNH-----------PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGI  582 (843)
Q Consensus       514 ~~~~~~~l~~l~~~~~~~~~-----------~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p  582 (843)
                      .......++.|+.+++.++.           ++++.++.+++||++..+++.+..+.+++|++|++++++++++|..+.|
T Consensus       651 ~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p  730 (971)
T 2x1g_F          651 RIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQP  730 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CT
T ss_pred             HHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccc
Confidence            23456678999999887753           4678889999999999999988888999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhccc--ccCCcCCchHHHHHHHHH
Q 003155          583 TIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSI--EEFTSRPDVADDCFLLAS  660 (843)
Q Consensus       583 ~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~--~~~~~~pD~~~~~f~l~~  660 (843)
                      ++|++++.+...|++.+++++|++++.++..||.++.+.+.+.+++..++.+++.++++.  ++++++||++++||+|+.
T Consensus       731 ~l~~~~~~l~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~  810 (971)
T 2x1g_F          731 MLQDLCLFIVASFQTRCCAPTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLT  810 (971)
T ss_dssp             HHHHHHHHHHHHCC--CCHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHH
Confidence            999999999999999999999999999999999987788999999999999999988753  356789999999999999


Q ss_pred             HHHhhCCCcccCcCC-cHHHHHHHHHhccCCChhHHHHHHHHHHHhhccccCCCchhhHHHHHHHHhhhhHHHHHHHHHH
Q 003155          661 RCIRYCPQLFIPSSV-FPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIAS  739 (843)
Q Consensus       661 ~~~~~~p~~~~~s~~-l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~  739 (843)
                      +++++||..+++++. ++.++++++.+++++|+++.+++++||..++++.+      ..+.+++++.++|+.|+..++.+
T Consensus       811 ~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~------~~~~~~~~~~~~g~~l~~~l~~~  884 (971)
T 2x1g_F          811 QIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSR------NHAHVTEVVLATGEQTLYTAMMC  884 (971)
T ss_dssp             HHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC------chHHHHHHHHHhHHHHHHHHHHH
Confidence            999999999999898 99999999999999999999999999999998632      12347899999999999999999


Q ss_pred             cccCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHHh--hCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHH
Q 003155          740 LTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVS--LIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDV  817 (843)
Q Consensus       740 l~~~~p~s~~~~~a~iL~~l~~~~~~~~~~wl~~~l~--~~P~~~~t~~~~~~f~~~l~~~~~~~~~~~~~~~~~~F~~~  817 (843)
                      ++|..||+.+++++++|+++..++|+.++.||.+++.  .||+.++++++|++|+++|++.+  .++|+||+.+++||..
T Consensus       885 ~~~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~~--~~~r~~~~~~~~f~~~  962 (971)
T 2x1g_F          885 VGYLTPRSQVDKFADILLAMNRKYAAEMAVWMKSLMSTPNFPTQLITDADKTRYTALIIKEK--VNKRLLQQHLSEMAMK  962 (971)
T ss_dssp             HHTTSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCSSSCHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHH
T ss_pred             hcccCChhHHHHHHHHHHHHHHHCcHHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHHHH--hChHhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999985  89999999999999999998753  3789999999999999


Q ss_pred             Hhhh
Q 003155          818 CRRN  821 (843)
Q Consensus       818 ~r~~  821 (843)
                      |||.
T Consensus       963 ~r~~  966 (971)
T 2x1g_F          963 TRGL  966 (971)
T ss_dssp             HHC-
T ss_pred             HcCc
Confidence            9996
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 843
d1w9ca_321 a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Ho 4e-12
d1wa5c_959 a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc 4e-10
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 0.001
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Length = 321 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Exportin HEAT-like repeat
domain: Exportin-1 (Xpo1, Crm1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (161), Expect = 4e-12
 Identities = 25/164 (15%), Positives = 67/164 (40%), Gaps = 6/164 (3%)

Query: 546 PIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLY 605
           P+ +++  ++   ++ +             ++ F+   + A+L + Q      ++P  L 
Sbjct: 37  PLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLS 96

Query: 606 LSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRY 665
             + ++   G   +  + +  + +A+F+ T  ++   ++F   P+   + FLL      +
Sbjct: 97  TMAIIVNKLGGHIT--AEIPQIFDAVFECTLNMIN--KDFEEYPEHRTNFFLLLQAVNSH 152

Query: 666 CPQLF--IPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFD 707
           C   F  IP + F  ++D  +       R  +++ L  L  +  
Sbjct: 153 CFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQ 196
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query843
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.88
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.85
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.83
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 99.8
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.46
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.36
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.17
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.12
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.01
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.92
d1b3ua_588 Constant regulatory domain of protein phosphatase 98.73
d1b3ua_588 Constant regulatory domain of protein phosphatase 98.56
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.41
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.14
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 97.13
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 96.64
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 96.52
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 96.0
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 95.94
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 93.75
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 92.13
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 91.73
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 90.28
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 86.55
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 81.75
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.9e-23  Score=248.72  Aligned_cols=620  Identities=14%  Similarity=0.130  Sum_probs=372.9

Q ss_pred             chhHHHHHhhcCC--CcchHHHHHHHHHHHhhhccCCCCCccCcHhHHHHHHHHHHhhHHHHhhccCCHHHHHHHHHHHH
Q 003155           87 HPLVLTALSSLHS--EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFA  164 (843)
Q Consensus        87 ~~ll~~~~~~L~~--~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~  164 (843)
                      ..+++.+++.+.+  ++++..|+.|+..++.....       .....+..+++.+..+     ..+++.+..+..++.++
T Consensus       171 ~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~-------~~~~~~~~~l~~l~~~-----~~~~~~~vr~~~~~~l~  238 (888)
T d1qbkb_         171 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ-------ALMLHIDSFTENLFAL-----AGDEEPEVRKNVCRALV  238 (888)
T ss_dssp             TTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCS-------TTCSHHHHCSHHHHTT-----SSCCCSSSTTHHHHTTT
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHHh-----cCCcchHHHHHHHHHHH
Confidence            4467777777764  47889999998877754321       1112223323322211     11334444556777777


Q ss_pred             HHhhHHHHHHHcCCchHHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHHHHHH
Q 003155          165 DMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAY  244 (843)
Q Consensus       165 ~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  244 (843)
                      .+.+.+...+..   ++..++++++..+..++++++..+++||..+++.....                    ....+++
T Consensus       239 ~l~~~~~~~l~~---~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~--------------------~~~~~~l  295 (888)
T d1qbkb_         239 MLLEVRMDRLLP---HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK--------------------DVLVRHL  295 (888)
T ss_dssp             TTSCSCTTTTTT---TTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGT--------------------TTTTTST
T ss_pred             HHHHHhHHHHHH---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhH--------------------HHHHHHH
Confidence            777666554443   34567888888888899999999999999877542110                    1122334


Q ss_pred             HHHHHHHHhhccCCCCC--------CCC----------------------------ChhhhHHhHhhhccccccCCCcch
Q 003155          245 ESLVSLVSFRVQYPQDY--------QDL----------------------------SLEDLKEFKHTRYDLACCSSSTLT  288 (843)
Q Consensus       245 ~~L~~~l~~k~~~p~d~--------~~~----------------------------~~e~~e~f~~~R~~~~~~~~~~~~  288 (843)
                      .++++.++..|.|++..        .++                            ..++.++..+..   .....+.|+
T Consensus       296 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  372 (888)
T d1qbkb_         296 PKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEID---DDDTISDWN  372 (888)
T ss_dssp             TTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTC---CCSTTSCCS
T ss_pred             HHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhh---hhhhhhhhh
Confidence            44555555555554310        000                            000000001100   011223355


Q ss_pred             hhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccC
Q 003155          289 ESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK  368 (843)
Q Consensus       289 ~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~  368 (843)
                      .+..   .+.++..+....| +.+++.+.+.+.+.+.     +.+|+.+||+++++++|++++.....++++++++.+.+
T Consensus       373 ~r~~---a~~~L~~l~~~~~-~~il~~~l~~l~~~l~-----s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~  443 (888)
T d1qbkb_         373 LRKC---SAAALDVLANVYR-DELLPHILPLLKELLF-----HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQ  443 (888)
T ss_dssp             SHHH---HHHHSTTTTTTCC-SSSHHHHHHHHHHTTT-----SSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHH
T ss_pred             HHHH---HHHHHhhHhhhhH-HHHHHHHHHHHHHhhc-----cchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHH
Confidence            5433   5556666667777 5688888888887663     67899999999999999999876667888888887643


Q ss_pred             -CC-CcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Q 003155          369 -LP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLCGYLDGLYN  445 (843)
Q Consensus       369 -lp-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~  445 (843)
                       +. ++|.||.++++++|+|++|+...... .++.++++.++..+.++ ++|+.+||.||..+++.+...+.||++.+++
T Consensus       444 ~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~  522 (888)
T d1qbkb_         444 CLSDKKALVRSITCWTLSRYAHWVVSQPPD-TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILD  522 (888)
T ss_dssp             HTTSSCHHHHHHHHHHHHHTHHHHHSSCHH-HHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHH
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHhhhhhhh-hhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence             33 48999999999999999999765421 37788888888777554 4599999999999999999999999999999


Q ss_pred             HHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHH-HHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHH
Q 003155          446 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV-DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRF  524 (843)
Q Consensus       446 ~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~-~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l  524 (843)
                      .+...+.     +...+.+..++++++.++...... ....+...++.++++.+....+.         .......++++
T Consensus       523 ~l~~~l~-----~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---------~~~~~~~le~l  588 (888)
T d1qbkb_         523 TLVFAFS-----KYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE---------DKDLFPLLECL  588 (888)
T ss_dssp             HHHHHTT-----TCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTT---------CTTHHHHHHHH
T ss_pred             HHHHHHh-----hhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccc---------hHHHHHHHHHH
Confidence            9988875     345678888999999999875442 24556666666665544432211         12234447888


Q ss_pred             HHhhhccCCc-chH-HHHHHHHHHHHHHHHHhh-----------cCCHHHHHHHHHHHHHHHHhhhhhhhhhHHH--HHH
Q 003155          525 AYIFRYVNHP-EAV-ADAIQRLWPIFKAIFDIR-----------AWDMRTMESLCRACKYAVRTSKRFMGITIGA--ILE  589 (843)
Q Consensus       525 ~~~~~~~~~~-~~~-~~~~~~~~~~l~~il~~~-----------~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~--l~~  589 (843)
                      +.+...++.. .|. .++++.++.++...+...           ..+.+++..++.++...++.++..+.+++..  ++.
T Consensus       589 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~  668 (888)
T d1qbkb_         589 SSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILT  668 (888)
T ss_dssp             HHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHH
T ss_pred             HHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHH
Confidence            8888776531 221 234444455444433210           1245567777888888888888877776542  455


Q ss_pred             HHHHHHhhcCC---chHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhC
Q 003155          590 EIQGLYQQHQQ---PCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYC  666 (843)
Q Consensus       590 ~l~~~~~~~~~---~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~  666 (843)
                      .+...++....   ...+.+++.+....+..  +.+.+..++..    ....++     .+.+++.......++.+..+.
T Consensus       669 ~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~--~~~~l~~~~~~----l~~~L~-----~~~~~v~~~a~~~ig~ia~~~  737 (888)
T d1qbkb_         669 LMYQCMQDKMPEVRQSSFALLGDLTKACFQH--VKPCIADFMPI----LGTNLN-----PEFISVCNNATWAIGEISIQM  737 (888)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG--TGGGHHHHHHH----HHHTCC-----GGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHH----HHHHhC-----cCCHHHHHHHHHHHHHHHHHH
Confidence            55554443211   23345556666555543  44554444433    233333     245677777777778888777


Q ss_pred             CCcccCcCCcHHHHHHHHHhccCCCh--hHHHHHHHHHHHhhccccCCCchhhHHHHHHHHhhhhHHHHHHHHHHcccCC
Q 003155          667 PQLFIPSSVFPSLVDCSMIGITVQHR--EASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGAL  744 (843)
Q Consensus       667 p~~~~~s~~l~~i~~~~~~~l~~~e~--~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~  744 (843)
                      +..+.+  +++.+++..+..++.++.  .....++.-+..+...     .+       +.+..|.+.++..++..+..  
T Consensus       738 ~~~~~p--y~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~-----~p-------~~~~~~l~~~~~~~~~~l~~--  801 (888)
T d1qbkb_         738 GIEMQP--YIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV-----CP-------QEVAPMLQQFIRPWCTSLRN--  801 (888)
T ss_dssp             GGGGGG--GSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH-----CH-------HHHGGGGGGTHHHHHHHHTT--
T ss_pred             HHHhhh--hHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH-----CH-------HHHHhhHHHHHHHHHHHhcc--
Confidence            665543  667777777766665432  2445566666665531     11       22234444555555555532  


Q ss_pred             CCCCc--ccHHHHHHHHHHHhhHHHHHHHHH---HHhhCCCCCCCHHHHHHHHHHHHH
Q 003155          745 PSSRL--ETVTYALLALTRAYGVRSLEWAKE---SVSLIPLTALAEVERSRFLQALSE  797 (843)
Q Consensus       745 p~s~~--~~~a~iL~~l~~~~~~~~~~wl~~---~l~~~P~~~~t~~~~~~f~~~l~~  797 (843)
                      .++.-  +..-.-|..+...+|.....++..   ++....+  .+++-++.|.+-|..
T Consensus       802 ~~d~~ek~~~~~g~~~~i~~~p~~~~~~l~~~~~~i~~~~~--~~~~~~~~~~~~l~~  857 (888)
T d1qbkb_         802 IRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWIN--PKDDLRDMFCKILHG  857 (888)
T ss_dssp             SCCSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHTTCSS--CCHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH
Confidence            22222  223344445566666544333333   2223332  457777777776643
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure