Citrus Sinensis ID: 003217
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 838 | 2.2.26 [Sep-21-2011] | |||||||
| Q84W55 | 1101 | Type II inositol 1,4,5-tr | yes | no | 0.941 | 0.716 | 0.686 | 0.0 | |
| O80560 | 1305 | Type I inositol 1,4,5-tri | no | no | 0.884 | 0.567 | 0.635 | 0.0 | |
| Q9SYK4 | 1136 | Type I inositol 1,4,5-tri | no | no | 0.887 | 0.654 | 0.632 | 0.0 | |
| Q9SKB7 | 1144 | Type II inositol 1,4,5-tr | no | no | 0.896 | 0.656 | 0.612 | 0.0 | |
| P32019 | 993 | Type II inositol 1,4,5-tr | no | no | 0.315 | 0.265 | 0.276 | 3e-35 | |
| Q8K337 | 993 | Type II inositol 1,4,5-tr | yes | no | 0.315 | 0.265 | 0.266 | 5e-33 | |
| D3ZGS3 | 902 | Inositol polyphosphate 5- | no | no | 0.301 | 0.280 | 0.274 | 2e-28 | |
| Q01968 | 901 | Inositol polyphosphate 5- | no | no | 0.315 | 0.293 | 0.261 | 7e-28 | |
| O43426 | 1573 | Synaptojanin-1 OS=Homo sa | no | no | 0.303 | 0.161 | 0.284 | 1e-27 | |
| Q62910 | 1574 | Synaptojanin-1 OS=Rattus | no | no | 0.303 | 0.161 | 0.272 | 3e-27 |
| >sp|Q84W55|IP5P4_ARATH Type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 OS=Arabidopsis thaliana GN=FRA3 PE=1 SV=2 | Back alignment and function desciption |
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Score = 1115 bits (2884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/813 (68%), Positives = 653/813 (80%), Gaps = 24/813 (2%)
Query: 30 IFDRYSSSLSPSSSEDDETESHPS-NSTIKRLDYMMEFLERKLSSSATTTNEKKRFASSS 88
+F+R + S S SS +D ES PS + + KR+DYM++FL+R+LS S
Sbjct: 28 LFNRSAYSSSSSSGDD---ESQPSVDDSNKRIDYMIQFLDRRLSEDGNHDGIGDG-NGSD 83
Query: 89 SLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAG 148
SLPE++GK G+ +FK P+R+A+HP RPPSL+V+PHPLRETQIG FLRT+ TE QLW G
Sbjct: 84 SLPEFVGKCGESGIFKVPIRSAVHPNRPPSLDVRPHPLRETQIGRFLRTMTSTERQLWTG 143
Query: 149 GENG-LRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK---GVSSVMCMVGDEASG 204
GE+G LRVW ELY V + TAP+KES+ G ++V+CM+GDE S
Sbjct: 144 GEDGALRVWEFSELYGSGRGLEV--------EDTAPYKESLGNEFGSAAVVCMIGDEGSR 195
Query: 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGI 264
VVWSGHRDGRI CW+ L D G E LSWQAHRGPVLS+ IS+YGD+WSGSEGG +
Sbjct: 196 VVWSGHRDGRIRCWR-----LRGDHGIEEALSWQAHRGPVLSIAISAYGDIWSGSEGGAL 250
Query: 265 KIWPWE-AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR 323
K+WPW+ A+ K+LSLK EERH AAL VERSYID R+ +S NGF++ LTSD+ L+SDH+R
Sbjct: 251 KVWPWDGALGKSLSLKMEERHMAALAVERSYIDPRNMVSANGFANTLTSDVTFLVSDHTR 310
Query: 324 AKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383
A+VWSA L+FA+WDARTR+L+KVFNIDGQ+ENR + S+ PDF E+E K K VT+SKK+
Sbjct: 311 ARVWSASPLTFAIWDARTRDLIKVFNIDGQLENRPENSVYPDFGSEEEGKMK-VTASKKE 369
Query: 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLL 443
KAQSS GFFQRSRNAIMGAADAVRR A KGGF DD+R+TEA+ S+DGMIWTG +NG+L+
Sbjct: 370 KAQSSLGFFQRSRNAIMGAADAVRRAATKGGFCDDSRKTEAIVISVDGMIWTGSSNGILM 429
Query: 444 QWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIK 503
+WD NGN LQ+F Y + C+ TF S++WVGY NG VQV DLEG LLGGWVAHS PVIK
Sbjct: 430 RWDGNGNCLQEFAYESSGILCMFTFCSRLWVGYSNGTVQVWDLEGKLLGGWVAHSGPVIK 489
Query: 504 MAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQ 563
MA+GAGY+FTLANHGGIRGWNVTSPGPLD++L ELAGKEFLY+R+ENLKILAGTWNVG+
Sbjct: 490 MAIGAGYLFTLANHGGIRGWNVTSPGPLDNVLRAELAGKEFLYSRIENLKILAGTWNVGE 549
Query: 564 GRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623
GRAS D+L+SWLG AA+ V IVVVGLQEVEMGAG LAMSAAKETVGLEGS +G WWLDMI
Sbjct: 550 GRASTDSLVSWLGCAATGVEIVVVGLQEVEMGAGVLAMSAAKETVGLEGSPLGQWWLDMI 609
Query: 624 GKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLR 683
GK LD+GS+F RVGSRQLAGLLI VWVR +LK +VGDVD AAVPCGFGRAIGNKGAVG+R
Sbjct: 610 GKTLDEGSSFVRVGSRQLAGLLICVWVRHDLKPHVGDVDAAAVPCGFGRAIGNKGAVGVR 669
Query: 684 VRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLR 743
+R+YDR++CFVNCHFAAHLEAVNRRNADFDHVYRTMTF R S+ +A AGAS V M R
Sbjct: 670 LRMYDRVLCFVNCHFAAHLEAVNRRNADFDHVYRTMTFSRQSSSLNAGVAGASFGVTMPR 729
Query: 744 STNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRA 803
N L T+E PELSEADMVIFLGDFNYRLD ITYDE RDFISQRCFDWLRE+DQL
Sbjct: 730 GGNALGVNTIEARPELSEADMVIFLGDFNYRLDDITYDETRDFISQRCFDWLREKDQLHT 789
Query: 804 EMEAGNVFQGMREADIKFPPTYKFEKHLAGLAG 836
EMEAGNVFQGMREA I+FPPTYKFE+H AGLAG
Sbjct: 790 EMEAGNVFQGMREAIIRFPPTYKFERHQAGLAG 822
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Required for secondary wall synthesis and actin organization in fiber cells. Has phosphatase activity toward PtdIns(4,5)P2, PtdIns(3,4,5)P3 and Ins(1,4,5)P3. Has a higher substrate affinity toward PtdIns(4,5)P2. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 3EC: 6 |
| >sp|O80560|IP5PC_ARATH Type I inositol 1,4,5-trisphosphate 5-phosphatase 12 OS=Arabidopsis thaliana GN=5PTASE12 PE=1 SV=1 | Back alignment and function description |
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Score = 985 bits (2547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/751 (63%), Positives = 589/751 (78%), Gaps = 10/751 (1%)
Query: 90 LPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAGG 149
LPE++G GG + MFK P R+ LH ARPP LE++PHPL+ETQ+G FLR I CTE QLWAG
Sbjct: 117 LPEFVGSGGGVGMFKVPTRSPLHSARPPCLELRPHPLKETQVGRFLRNIACTETQLWAGQ 176
Query: 150 ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209
E+G+R WN + ++ S V + G++ APF+ES S C++ D + +VWSG
Sbjct: 177 ESGVRFWNFDDAFEPGCGLSGRVQR--GDEDAAPFQESAS-TSPTTCLMVDNGNRLVWSG 233
Query: 210 HRDGRIMCWKMNARLLDSDDG-FGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWP 268
H+DG+I WKM+ L D DD F E L+WQAH+GPV S+ +SSYGDLWS SEGG IKIW
Sbjct: 234 HKDGKIRSWKMDYVLDDGDDSPFKEGLAWQAHKGPVNSVIMSSYGDLWSCSEGGVIKIWT 293
Query: 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS 328
WE++EK+LSL+ EE+H AAL+VERS IDLR+ ++VNG +I +S++K LL+D+ R+KVW+
Sbjct: 294 WESMEKSLSLRLEEKHMAALLVERSGIDLRAQVTVNGTCNISSSEVKCLLADNVRSKVWA 353
Query: 329 AGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF-AMEDEFKTKIVTSSKKDKAQS 387
A +F+LWD RT+ELLKVFN +GQ ENRVDM L D A EDE K KI ++SKK+K
Sbjct: 354 AQLQTFSLWDGRTKELLKVFNSEGQTENRVDMPLGQDQPAAEDEMKAKIASTSKKEKPH- 412
Query: 388 SFGFFQRSRNAIMGAADAVRRVAAKGGFG-DDNRRTEALTTSIDGMIWTGGANGLLLQWD 446
GF QRSRNAIMGAADAVRRVA +GG +D +RTEA+ + DGMIWTG NGLL+QWD
Sbjct: 413 --GFLQRSRNAIMGAADAVRRVATRGGGAYEDAKRTEAMVLAGDGMIWTGCTNGLLIQWD 470
Query: 447 PNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV 506
NGNRLQDF++ AV C CTFG +I++GY++G +Q++DLEGNL+ GWVAH++ VIKMA
Sbjct: 471 GNGNRLQDFRHHQCAVLCFCTFGERIYIGYVSGHIQIIDLEGNLIAGWVAHNNAVIKMAA 530
Query: 507 GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRA 566
GYIF+LA HGGIRGW V SPGPLD I+ ELA KE Y + ++++IL G+WNVGQG+A
Sbjct: 531 ADGYIFSLATHGGIRGWPVISPGPLDGIIRSELAEKERTYAQTDSVRILTGSWNVGQGKA 590
Query: 567 SQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVG-LEGSAVGHWWLDMIGK 625
S DAL+SWLGS ASDVGI+VVGLQEVEMGAGFLAMSAAKE+VG EGS +G +W+D IGK
Sbjct: 591 SHDALMSWLGSVASDVGILVVGLQEVEMGAGFLAMSAAKESVGGNEGSTIGQYWIDTIGK 650
Query: 626 ILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVR 685
LD+ + FER+GSRQLAGLLI++WVRKNL+ +VGD+DVAAVPCGFGRAIGNKG VGLR+R
Sbjct: 651 TLDEKAVFERMGSRQLAGLLISLWVRKNLRTHVGDIDVAAVPCGFGRAIGNKGGVGLRIR 710
Query: 686 VYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRST 745
V+DRIMCF+NCH AAHLEAVNRRNADFDH+Y+TM+F R SN +A AAG S+ +S
Sbjct: 711 VFDRIMCFINCHLAAHLEAVNRRNADFDHIYKTMSFTRSSNAHNAPAAGVSTGSHTTKSA 770
Query: 746 NPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEM 805
N + T E +L+EADMV+F GDFNYRL GI+YDEARDF+SQR FDWLRE+DQLRAEM
Sbjct: 771 NNANVNTEETKQDLAEADMVVFFGDFNYRLFGISYDEARDFVSQRSFDWLREKDQLRAEM 830
Query: 806 EAGNVFQGMREADIKFPPTYKFEKHLAGLAG 836
+AG VFQGMREA I FPPTYKFE+H GL G
Sbjct: 831 KAGRVFQGMREAIITFPPTYKFERHRPGLGG 861
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Converts inositol 1,4,5-trisphosphate (Ins(1,4,5)P3) to inositol 1,4-bisphosphate. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 3 EC: . EC: 5 EC: 6 |
| >sp|Q9SYK4|IP5PD_ARATH Type I inositol 1,4,5-trisphosphate 5-phosphatase 13 OS=Arabidopsis thaliana GN=5PTASE13 PE=1 SV=1 | Back alignment and function description |
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Score = 984 bits (2544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/756 (63%), Positives = 585/756 (77%), Gaps = 12/756 (1%)
Query: 87 SSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLW 146
+ LPE+IG GG +FK PVRAA+HP RPP LE++PHPLRETQ G FLR I CTE QLW
Sbjct: 106 TEPLPEFIGAGGGSGIFKVPVRAAVHPGRPPCLELRPHPLRETQTGRFLRNIACTETQLW 165
Query: 147 AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV 206
AG ENG+R WNL++ Y+ V + G++ TAPF ESV S MC+V D+++ ++
Sbjct: 166 AGQENGIRFWNLEDAYEAGCGIGGQVPR--GDEDTAPFHESVT-TSPTMCLVADQSNKLL 222
Query: 207 WSGHRDGRIMCWKMNARLLDSDDG----FGEVLSWQAHRGPVLSLCISSYGDLWSGSEGG 262
WSGH+DG+I WKM+ + DD F E +SW AHRGPV S+ ISSYGD+WS SEGG
Sbjct: 223 WSGHKDGKIRAWKMDQSSVSHDDDDSDPFKERVSWLAHRGPVNSIVISSYGDMWSCSEGG 282
Query: 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS 322
IKIWPW+ +EK+L LKPEE+H AAL+VERS IDLRS ++VNG SI +S++K LL+D
Sbjct: 283 VIKIWPWDTLEKSLLLKPEEKHMAALLVERSAIDLRSQVTVNGTCSISSSEVKFLLADSV 342
Query: 323 RAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382
RAKVW+ LSF++WDAR+++LLKV N+DGQ+ENR D+ + D ++DE K K ++SK+
Sbjct: 343 RAKVWAVQSLSFSIWDARSKDLLKVLNVDGQVENRGDLPPIQDQQVDDEMKLKFFSASKR 402
Query: 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAK--GGFGDDNRRTEALTTSIDGMIWTGGANG 440
+K Q GF QRSRNAIMGAA AVRRVA + G F +D R+TEA+ ++DG IWTG +G
Sbjct: 403 EKPQ---GFLQRSRNAIMGAAGAVRRVATRSAGAFSEDTRKTEAIVLAVDGTIWTGSISG 459
Query: 441 LLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSP 500
L++QWD NGNRL+D + V C CTFG +I+VGY +G +QVLDL+G L+ WV+H+ P
Sbjct: 460 LIVQWDGNGNRLRDVNHHHRPVLCFCTFGDRIYVGYASGYIQVLDLDGKLISSWVSHNEP 519
Query: 501 VIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWN 560
VIK+A G G+IF+LA HGG+RGW VTSPGPLD+I+ EL+ KE LY R +N++IL GTWN
Sbjct: 520 VIKLAAGGGFIFSLATHGGVRGWYVTSPGPLDNIIRTELSQKETLYARQDNVRILIGTWN 579
Query: 561 VGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWL 620
VGQGRAS DAL+SWLGS SDVGIV VGLQEVEMGAGFLAMSAAKETVGLEGSAVG WW+
Sbjct: 580 VGQGRASHDALMSWLGSVTSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAVGQWWI 639
Query: 621 DMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAV 680
D IGK LD+ +TFER+GSRQLAGLLI++W RK+++ +VGD+DVAAVPCGFGRAIGNKG V
Sbjct: 640 DAIGKALDEKNTFERMGSRQLAGLLISLWARKDIRTHVGDLDVAAVPCGFGRAIGNKGGV 699
Query: 681 GLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQ 740
GLR+RVYDRIMCFVNCH AAHLEAVNRRNADF+H++R M F R NL +AAAAG S+
Sbjct: 700 GLRIRVYDRIMCFVNCHLAAHLEAVNRRNADFNHIFRLMVFSRGQNLSNAAAAGVSTSAY 759
Query: 741 MLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQ 800
+S S E +L+ ADMV F GDFNYRL GITYDEARDFISQR FDWLRERDQ
Sbjct: 760 TTKSNTIPSTGAEEIKSDLAAADMVAFFGDFNYRLFGITYDEARDFISQRSFDWLRERDQ 819
Query: 801 LRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAG 836
LRAEM+ G VFQGMREA I FPPTYKFE++ +GL G
Sbjct: 820 LRAEMKVGKVFQGMREALITFPPTYKFERNRSGLGG 855
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Converts inositol 1,4,5-trisphosphate (Ins(1,4,5)P3) to inositol 1,4-bisphosphate. Modulates cotyledon vein development through regulating auxin homeostasis. Involved in blue light responses. Decreases the amount of KIN10 degraded by the proteasome under low nutrient conditions. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 3 EC: . EC: 5 EC: 6 |
| >sp|Q9SKB7|IP5PE_ARATH Type II inositol 1,4,5-trisphosphate 5-phosphatase 14 OS=Arabidopsis thaliana GN=5PTASE14 PE=1 SV=1 | Back alignment and function description |
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Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/763 (61%), Positives = 574/763 (75%), Gaps = 12/763 (1%)
Query: 79 NEKKRFASSSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTI 138
N+ R SLPE+IG GG + +FK PVRAA++P RPP LE++PHPLRETQ G FLR I
Sbjct: 109 NDGGREDDIESLPEFIGAGGGLDVFKVPVRAAVNPGRPPCLELRPHPLRETQTGKFLRNI 168
Query: 139 VCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMV 198
CTE QLWAG ENG+R WNL+E Y+ V + G++ TAPF ESV S +C++
Sbjct: 169 ACTESQLWAGQENGVRFWNLEEAYEVGCGLGGQVRR--GDEDTAPFHESVP-TSPALCLL 225
Query: 199 GDEASGVVWSGHRDGRIMCWKMN---ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL 255
D + +VW+GH+DG+I WKMN D F E LSWQAHRGPV + ISSYGD+
Sbjct: 226 VDHGNRLVWTGHKDGKIRAWKMNQPNTTTADDSKPFKERLSWQAHRGPVNYIVISSYGDM 285
Query: 256 WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIK 315
WS S+GG IKIW +++EK+L LK EE+H AAL+VERS IDLRS ++VNG SI +SD+K
Sbjct: 286 WSCSDGGVIKIWTLDSLEKSLVLKLEEKHMAALLVERSGIDLRSQVTVNGTCSISSSDVK 345
Query: 316 NLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375
LL D +AKVW+ LSF+LWDA+ +ELLKVFNIDGQ+ENRVDM +ED K K
Sbjct: 346 FLLVDTVKAKVWAVQHLSFSLWDAQNKELLKVFNIDGQVENRVDMPPTQGQQVEDT-KAK 404
Query: 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--GGFGDDNRRTEALTTSIDGMI 433
++ KK+K+Q GF QRSR+AIMGAA AVRR A + G F +D R+ EA+ + DG I
Sbjct: 405 FFSAPKKEKSQ---GFLQRSRHAIMGAAGAVRRAATRSAGAFAEDTRKVEAIAIAADGSI 461
Query: 434 WTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGG 493
WTG NG++ QWD NG+RL++ + AV C CTFG +I+VGY +G +QVLDL G L+
Sbjct: 462 WTGSMNGVIAQWDGNGSRLREVNHHQQAVLCFCTFGDRIYVGYSSGYIQVLDLGGKLIAS 521
Query: 494 WVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLK 553
WV+H+ PVIK+A G G+IF+LA HGG+RGW VTSPGPLDS++ EL+ KE Y R +++K
Sbjct: 522 WVSHNEPVIKLAAGGGFIFSLATHGGVRGWYVTSPGPLDSLIRTELSQKEMAYARQDSVK 581
Query: 554 ILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGS 613
IL GTWNVG+GRAS+ AL+SWLGSA SDVGIV +GLQEV+MGAGFLAMS AKETVG+EGS
Sbjct: 582 ILIGTWNVGEGRASRGALVSWLGSAVSDVGIVAIGLQEVDMGAGFLAMSTAKETVGVEGS 641
Query: 614 AVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRA 673
AVG WWLD IG LD+ +TFER+GSRQLAGLLI++WVRK+++ +VGD+DVAAVPCGFGRA
Sbjct: 642 AVGQWWLDAIGNALDERNTFERMGSRQLAGLLISLWVRKSIRTHVGDLDVAAVPCGFGRA 701
Query: 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAA 733
IGNKG VGLR+RVYDRIMCFVNCH AAHLEAV RRNADF+H+YR+M F + ++ +AAAA
Sbjct: 702 IGNKGGVGLRIRVYDRIMCFVNCHLAAHLEAVTRRNADFNHIYRSMVFSKGQSVYTAAAA 761
Query: 734 GASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFD 793
GAS+ Q L++ + T E L+ AD+V F GDFNYRL GITYDEARDFIS R FD
Sbjct: 762 GASTSAQALKNNPNTNNSTEEEKSHLASADLVAFFGDFNYRLFGITYDEARDFISHRSFD 821
Query: 794 WLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAG 836
WLRE+DQLR EM G VFQGMREA I FPPTYKFEK+ GL G
Sbjct: 822 WLREKDQLRQEMNEGKVFQGMREALITFPPTYKFEKNKPGLGG 864
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Has phosphatase activity toward PtdIns(4,5)P2, PtdIns(3,4,5)P3 and Ins(1,4,5)P3. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
| >sp|P32019|I5P2_HUMAN Type II inositol 1,4,5-trisphosphate 5-phosphatase OS=Homo sapiens GN=INPP5B PE=1 SV=4 | Back alignment and function description |
|---|
Score = 150 bits (380), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 148/300 (49%), Gaps = 36/300 (12%)
Query: 529 GPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVG 588
G D+I+ L KE YT ++N + AGT+NV G++ ++ L WL + + VG
Sbjct: 322 GLRDTIVKSHLLQKEEDYTYIQNFRFFAGTYNVN-GQSPKECLRLWLSNGIQAPDVYCVG 380
Query: 589 LQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAV 648
QE+++ +KE + W + + L + + +V +L G+++ +
Sbjct: 381 FQELDL---------SKEAFFFHDTPKEEEWFKAVSEGLHPDAKYAKVKLIRLVGIMLLL 431
Query: 649 WVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRR 708
+V++ Y+ +V+ V G +GNKG V +R + ++ +C VN H AAH+E RR
Sbjct: 432 YVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEYERR 491
Query: 709 NADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFL 768
N D+ + M FC+P S PL+ +S D++++L
Sbjct: 492 NQDYKDICSRMQFCQPDP-----------------SLPPLT---------ISNHDVILWL 525
Query: 769 GDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE 828
GD NYR++ + ++ + I ++ F L DQL+ ++ A VF+G E ++ F PTYK++
Sbjct: 526 GDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYD 585
|
Hydrolyzes phosphatidylinositol 4,5-bisphosphate (PtIns(4,5)P2) and the signaling molecule phosphatidylinositol 1,4,5-trisphosphate (PtIns(1,4,5)P3), and thereby modulates cellular signaling events. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
| >sp|Q8K337|I5P2_MOUSE Type II inositol 1,4,5-trisphosphate 5-phosphatase OS=Mus musculus GN=Inpp5b PE=1 SV=1 | Back alignment and function description |
|---|
Score = 143 bits (361), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 146/300 (48%), Gaps = 36/300 (12%)
Query: 529 GPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVG 588
G D+I+ L KE YT ++N + GT+NV G++ ++ L WL +A + VG
Sbjct: 322 GLRDTIVRSHLVQKEENYTYIQNFRFFVGTYNVN-GQSPKECLRPWLSHSALAPDVYCVG 380
Query: 589 LQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAV 648
QE+++ +KE + W + + L + + +V +L G+++ +
Sbjct: 381 FQELDL---------SKEAFFFHDTPKEEEWFKAVSESLHPDAKYAKVKFVRLVGIMLLL 431
Query: 649 WVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRR 708
+V++ Y+ +V+ V G +GNKG V +R ++++ +C VN H AAH E RR
Sbjct: 432 YVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQLHNTSICVVNSHLAAHTEEYERR 491
Query: 709 NADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFL 768
N D+ + M F Q+ S PL+ +++ D++++L
Sbjct: 492 NQDYRDICSRMQF-----------------PQVDPSQPPLT---------INKHDVILWL 525
Query: 769 GDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE 828
GD NYR++ + + + + ++ F L DQL+ ++ A +F G E +I F PTYK++
Sbjct: 526 GDLNYRIEELDVGKVKKLVEEKAFQTLYAHDQLKIQVAARTIFDGFTEGEITFQPTYKYD 585
|
Hydrolyzes phosphatidylinositol 4,5-bisphosphate (PtIns(4,5)P2) and the signaling molecule phosphatidylinositol 1,4,5-trisphosphate (PtIns(1,4,5)P3), and thereby modulates cellular signaling events. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
| >sp|D3ZGS3|OCRL_RAT Inositol polyphosphate 5-phosphatase OCRL-1 OS=Rattus norvegicus GN=Ocrl PE=1 SV=1 | Back alignment and function description |
|---|
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 131/291 (45%), Gaps = 38/291 (13%)
Query: 539 LAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGA-G 597
LA +E Y +++ + GTWNV G++ +L WL + I +G QE+++
Sbjct: 228 LAKREKEYVNIQSFRFFVGTWNVN-GQSPDSSLEPWLNCDPNPPDIYCIGFQELDLSTEA 286
Query: 598 FLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDY 657
F + KE W + + L + +++V +L G+++ V+ +K+ Y
Sbjct: 287 FFYFESVKE----------QEWAMAVERGLPSKAKYKKVQLVRLVGMMLLVFAKKDQCQY 336
Query: 658 VGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYR 717
+ D+ V G +GNKG V +R ++ C VN H AAH+E RRN D+ +
Sbjct: 337 IRDIATETVGTGIMGKMGNKGGVAMRFVFHNTTFCIVNSHLAAHVEEFERRNQDYKDICA 396
Query: 718 TMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDG 777
M+F P+ Q L N + + D+VI+LGD NYRL
Sbjct: 397 RMSFSVPN--------------QTLPQVN------------IMKHDVVIWLGDLNYRLCM 430
Query: 778 ITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE 828
+E + I++ L + DQL + F E +IKF PTYK++
Sbjct: 431 PDANEVKSLINKNELQKLLKFDQLNIQRTQKKAFVDFNEGEIKFIPTYKYD 481
|
Converts phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 4-phosphate. Also converts inositol 1,4,5-trisphosphate to inositol 1,4-bisphosphate and inositol 1,3,4,5-tetrakisphosphate to inositol 1,3,4-trisphosphate. May function in lysosomal membrane trafficking by regulating the specific pool of phosphatidylinositol 4,5-bisphosphate that is associated with lysosomes. Involved in primary cilia assembly. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
| >sp|Q01968|OCRL_HUMAN Inositol polyphosphate 5-phosphatase OCRL-1 OS=Homo sapiens GN=OCRL PE=1 SV=3 | Back alignment and function description |
|---|
Score = 126 bits (317), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 137/306 (44%), Gaps = 42/306 (13%)
Query: 526 TSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIV 585
T G + ++ LA +E Y ++ + GTWNV G++ L WL + I
Sbjct: 214 TQSGQREGLIKHILAKREKEYVNIQTFRFFVGTWNVN-GQSPDSGLEPWLNCDPNPPDIY 272
Query: 586 VVGLQEVEMGA-GFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGL 644
+G QE+++ F + KE W + + L + +++V +L G+
Sbjct: 273 CIGFQELDLSTEAFFYFESVKE----------QEWSMAVERGLHSKAKYKKVQLVRLVGM 322
Query: 645 LIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEA 704
++ ++ RK+ Y+ D+ V G +GNKG V +R ++ C VN H AAH+E
Sbjct: 323 MLLIFARKDQCRYIRDIATETVGTGIMGKMGNKGGVAVRFVFHNTTFCIVNSHLAAHVED 382
Query: 705 VNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELS--EA 762
RRN D+ + M+F P+ + +P+L+ +
Sbjct: 383 FERRNQDYKDICARMSFVVPN----------------------------QTLPQLNIMKH 414
Query: 763 DMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFP 822
++VI+LGD NYRL +E + I+++ L + DQL + F E +IKF
Sbjct: 415 EVVIWLGDLNYRLCMPDANEVKSLINKKDLQRLLKFDQLNIQRTQKKAFVDFNEGEIKFI 474
Query: 823 PTYKFE 828
PTYK++
Sbjct: 475 PTYKYD 480
|
Converts phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 4-phosphate. Also converts inositol 1,4,5-trisphosphate to inositol 1,4-bisphosphate and inositol 1,3,4,5-tetrakisphosphate to inositol 1,3,4-trisphosphate. May function in lysosomal membrane trafficking by regulating the specific pool of phosphatidylinositol 4,5-bisphosphate that is associated with lysosomes. Involved in primary cilia assembly. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
| >sp|O43426|SYNJ1_HUMAN Synaptojanin-1 OS=Homo sapiens GN=SYNJ1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 139/316 (43%), Gaps = 62/316 (19%)
Query: 533 SILCKELAGKEFLYTRMENLKILAGTWNVGQGRA------SQDALISWLGSAASDVGI-- 584
S + K + + Y++ + +++ GTWNV G+ L WL A GI
Sbjct: 514 SKVLKSMCENFYKYSKPKKIRVCVGTWNVNGGKQFRSIAFKNQTLTDWLLDAPKLAGIQE 573
Query: 585 -----------VVVGLQE-VEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGST 632
+G +E VE+ AG + +SA+ L W + K + +
Sbjct: 574 FQDKRSKPTDIFAIGFEEMVELNAGNI-VSASTTNQKL--------WAVELQKTISRDNK 624
Query: 633 FERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMC 692
+ + S QL G+ + V++R ++ DV V V G G A GNKGAV +R+ + +C
Sbjct: 625 YVLLASEQLVGVCLFVFIRPQHAPFIRDVAVDTVKTGMGGATGNKGAVAIRMLFHTTSLC 684
Query: 693 FVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLT 752
FV HFAA V RN DF + R ++F P+ +
Sbjct: 685 FVCSHFAAGQSQVKERNEDFIEIARKLSF-------------------------PMGRM- 718
Query: 753 VEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQ 812
L D V + GDFNYR+D + +E ++ I Q+ +D L DQL + AG VF+
Sbjct: 719 ------LFSHDYVFWCGDFNYRID-LPNEEVKELIRQQNWDSLIAGDQLINQKNAGQVFR 771
Query: 813 GMREADIKFPPTYKFE 828
G E + F PTYK++
Sbjct: 772 GFLEGKVTFAPTYKYD 787
|
Inositol 5-phosphatase which has a role in clathrin-mediated endocytosis. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
| >sp|Q62910|SYNJ1_RAT Synaptojanin-1 OS=Rattus norvegicus GN=Synj1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 136/316 (43%), Gaps = 62/316 (19%)
Query: 533 SILCKELAGKEFLYTRMENLKILAGTWNVGQGRA------SQDALISWLGSAASDVGI-- 584
S + K + + Y++ + +++ GTWNV G+ L WL A GI
Sbjct: 514 SKVLKNMCENFYKYSKPKKIRVCVGTWNVNGGKQFRSIAFKNQTLTDWLLDAPKLAGIQE 573
Query: 585 -----------VVVGLQE-VEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGST 632
+G +E VE+ AG + ++ W + K + +
Sbjct: 574 FQDKRSKPTDIFAIGFEEMVELNAGNIVNASTTNQ---------KLWAVELQKTISRDNK 624
Query: 633 FERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMC 692
+ + S QL G+ + V++R ++ DV V V G G A GNKGAV +R+ + +C
Sbjct: 625 YVLLASEQLVGVCLFVFIRPQHAPFIRDVAVDTVKTGMGGATGNKGAVAIRMLFHTTSLC 684
Query: 693 FVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLT 752
FV HFAA V RN DF + R ++F P+ +
Sbjct: 685 FVCSHFAAGQSQVKERNEDFVEIARKLSF-------------------------PMGRM- 718
Query: 753 VEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQ 812
L D V + GDFNYR+D + +E ++ I Q+ +D L DQL + AG +F+
Sbjct: 719 ------LFSHDYVFWCGDFNYRID-LPNEEVKELIRQQNWDSLIAGDQLINQKNAGQIFR 771
Query: 813 GMREADIKFPPTYKFE 828
G E + F PTYK++
Sbjct: 772 GFLEGKVTFAPTYKYD 787
|
Inositol 5-phosphatase which has a role in clathrin-mediated endocytosis. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 838 | ||||||
| 296083403 | 1105 | unnamed protein product [Vitis vinifera] | 0.964 | 0.731 | 0.708 | 0.0 | |
| 255547426 | 1102 | type II inositol 5-phosphatase, putative | 0.923 | 0.702 | 0.694 | 0.0 | |
| 356574838 | 1138 | PREDICTED: type II inositol-1,4,5-trisph | 0.936 | 0.689 | 0.688 | 0.0 | |
| 4688596 | 1101 | inositol 1,4,5-trisphosphate 5-phosphata | 0.941 | 0.716 | 0.686 | 0.0 | |
| 42562979 | 1101 | Type II inositol-1,4,5-trisphosphate 5-p | 0.941 | 0.716 | 0.686 | 0.0 | |
| 297841089 | 1103 | hypothetical protein ARALYDRAFT_475657 [ | 0.967 | 0.735 | 0.666 | 0.0 | |
| 28393619 | 1101 | unknown protein [Arabidopsis thaliana] | 0.941 | 0.716 | 0.685 | 0.0 | |
| 356535258 | 1100 | PREDICTED: type II inositol-1,4,5-trisph | 0.915 | 0.697 | 0.700 | 0.0 | |
| 449442781 | 1130 | PREDICTED: type II inositol 1,4,5-trisph | 0.983 | 0.729 | 0.651 | 0.0 | |
| 449485393 | 896 | PREDICTED: LOW QUALITY PROTEIN: type II | 0.983 | 0.919 | 0.650 | 0.0 |
| >gi|296083403|emb|CBI23358.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1174 bits (3038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/836 (70%), Positives = 684/836 (81%), Gaps = 28/836 (3%)
Query: 11 DDVVSSATSH-SYTDHQGTRIFDRYSSSLSPSSSEDD---------ETESHPSNSTIKRL 60
DDV S H SY+ G+ ++ SSS+DD + S + +RL
Sbjct: 9 DDVFPSLNLHPSYSSDDGSNRTPKFFDRFYDSSSDDDFCPSSSAAAPSISEGVENAGRRL 68
Query: 61 DYMMEFLERKLSSSATTTNEKKRFASSSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLE 120
DYM++FLERKLSS +++ R +LPE++GKGG MFK PV ++HP RPPSLE
Sbjct: 69 DYMIQFLERKLSSP---DHDRTR-----ALPEFVGKGGGTGMFKVPVHVSVHPGRPPSLE 120
Query: 121 VKPHPLRETQIGCFLRTIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDG 180
V+PHPLRETQIGCFLR++VCTE QLWAG E G+RVWN +LY S + V++S G++
Sbjct: 121 VRPHPLRETQIGCFLRSVVCTESQLWAGQECGVRVWNFSDLYG-SACGAGGVTRS-GDEE 178
Query: 181 TAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH 240
TAPF ESV+ + +C+V DEA+ +VWSGH+DG++ WKM+ RL D+ F E L+W AH
Sbjct: 179 TAPFCESVQ-TPAAICLVVDEANRLVWSGHKDGKVRAWKMDQRLGDAP--FTECLAWLAH 235
Query: 241 RGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300
R PVLSL ++SYGDLWSGSEGG IKIWPWE+IEK SL EERH AAL+VERS+IDLRS
Sbjct: 236 RTPVLSLVMTSYGDLWSGSEGGVIKIWPWESIEKVFSLTMEERHMAALLVERSFIDLRSQ 295
Query: 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDM 360
++VNG +IL SD+K ++SD+ RAKVWSAG+ SFALWDARTRELLKVFN+DGQ+ENRVD+
Sbjct: 296 VTVNGVCNILASDVKYMISDNCRAKVWSAGYQSFALWDARTRELLKVFNVDGQMENRVDI 355
Query: 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420
S + D A ++E+K K V+S KKDK Q+SF F QRSRNAIMGAADAVRRVAAKG FGDD+R
Sbjct: 356 SPVQDPAFDEEWKMKSVSSLKKDKLQASFSFLQRSRNAIMGAADAVRRVAAKGAFGDDSR 415
Query: 421 RTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGI 480
RTEAL +IDGMIWTG +GLL+QWD NGNRLQDF Y FAVQC CTFGS+IWVGY++G
Sbjct: 416 RTEALVMTIDGMIWTGCTSGLLVQWDGNGNRLQDFHYHSFAVQCFCTFGSRIWVGYVSGT 475
Query: 481 VQVLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELA 540
VQVLDLEGNLLGGW+AH SPVI M GAGY+FTLAN GGIRGWN TSPGPLDSIL ELA
Sbjct: 476 VQVLDLEGNLLGGWIAHDSPVINMTSGAGYVFTLANDGGIRGWNTTSPGPLDSILSSELA 535
Query: 541 GKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLA 600
GKEFLYTR+ENLKILAGTWNVGQGRAS D+LISWLGSA+SDVGI+VVGLQEVEMGAGFLA
Sbjct: 536 GKEFLYTRLENLKILAGTWNVGQGRASHDSLISWLGSASSDVGIIVVGLQEVEMGAGFLA 595
Query: 601 MSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGD 660
MSAAKETVGLEGS+VG WWLDMIG+ LD+GS FERVGSRQLAGLLIAVWVR N++ +VGD
Sbjct: 596 MSAAKETVGLEGSSVGQWWLDMIGRTLDEGSIFERVGSRQLAGLLIAVWVRNNIRAHVGD 655
Query: 661 VDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMT 720
VD AAVPCGFGRAIGNKGAVGLR+RVY+RIMCFVNCHFAAHLEAVNRRNADFDHVYRTM
Sbjct: 656 VDAAAVPCGFGRAIGNKGAVGLRMRVYNRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMI 715
Query: 721 FCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITY 780
F RPSNL +A AG SS VQMLRS N +VEG PELSEADMV+FLGDFNYRLDGI+Y
Sbjct: 716 FSRPSNLFNATTAGVSSAVQMLRSAN-----SVEGTPELSEADMVVFLGDFNYRLDGISY 770
Query: 781 DEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAG 836
DEARDF+SQRCFDWL+ERDQLRAEMEAGNVFQGMREA ++FPPTYKFE+H AGLAG
Sbjct: 771 DEARDFVSQRCFDWLKERDQLRAEMEAGNVFQGMREAVVRFPPTYKFERHQAGLAG 826
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255547426|ref|XP_002514770.1| type II inositol 5-phosphatase, putative [Ricinus communis] gi|223545821|gb|EEF47324.1| type II inositol 5-phosphatase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1138 bits (2944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/827 (69%), Positives = 663/827 (80%), Gaps = 53/827 (6%)
Query: 29 RIFDRYSSSLSPSSSEDDETESHPSNSTIKRLDYMMEFLERKLSSSATTTN--------- 79
RIFDRY LSPSS+ D+ ES S +T KRLDYM++FL+RKLS++ T N
Sbjct: 30 RIFDRY---LSPSSTSSDD-ESQLSEATTKRLDYMIQFLDRKLSTTCTDNNIPNSPSSSS 85
Query: 80 ---------EKKRFASSSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQ 130
+SS +LPE+IGKGG +F+ P R ALHP RPPSLEV+P PLRE+Q
Sbjct: 86 SSHYYDNNYRNNNQSSSGALPEFIGKGGGSGIFRVPARRALHPGRPPSLEVRPRPLRESQ 145
Query: 131 IGCFLRTIVCTEEQLWAGGENG-LRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK 189
IGC+LRTI +E QLW+G E+G L+VW +LY SE TAP+ ESV
Sbjct: 146 IGCYLRTITTSETQLWSGSEDGALQVWEFDDLYGGSEE-------------TAPYTESVG 192
Query: 190 GVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI 249
S+V+CMVGD+A+ VVWSGHRDG++ CWKM+ + + F EVLSW AHR +LS+ I
Sbjct: 193 LGSAVLCMVGDDANKVVWSGHRDGKVRCWKMDF----TSNRFREVLSWIAHRSSILSMLI 248
Query: 250 SSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSI 309
+SYGDLWSGSEGG IKIWPWE+I + S +ERH A+L VERSYID ++ ++NGFS+
Sbjct: 249 TSYGDLWSGSEGGAIKIWPWESIHTSFSFTEDERHLASLTVERSYIDPKAQFALNGFSNA 308
Query: 310 LTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369
L+SDI+ LLSDHSRAKVW+AG+ SFALWDAR+RELLKVFN+DGQIE ++DMS D E
Sbjct: 309 LSSDIRYLLSDHSRAKVWTAGYFSFALWDARSRELLKVFNLDGQIE-KLDMSSAQDITFE 367
Query: 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429
DE K KIV SKKDK Q+SFGFFQRSRNAIMGAADAVRRVAAKGGFG+D RRTEAL SI
Sbjct: 368 DEIKMKIVAGSKKDKIQTSFGFFQRSRNAIMGAADAVRRVAAKGGFGEDYRRTEALIISI 427
Query: 430 DGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGN 489
DG+IWTG ANGLL+QWD NGNRL +FQY AVQC CTFG ++WVGY +G +QVLDLEGN
Sbjct: 428 DGIIWTGCANGLLVQWDGNGNRLHEFQYHSSAVQCFCTFGLRMWVGYASGTIQVLDLEGN 487
Query: 490 LLGGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRM 549
L+GGW+AHSSPVIKM+VG GY+FTLANHGGIRGWN+ SPGPLD+IL ELAGKEFLYT++
Sbjct: 488 LIGGWLAHSSPVIKMSVGGGYVFTLANHGGIRGWNIMSPGPLDNILRSELAGKEFLYTKI 547
Query: 550 ENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVG 609
ENLKILAGTWNV QGRAS+D+LISWLGSAA DVGIVVVGLQEVEMGAG LAMSAAKETVG
Sbjct: 548 ENLKILAGTWNVAQGRASRDSLISWLGSAAGDVGIVVVGLQEVEMGAGVLAMSAAKETVG 607
Query: 610 LEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCG 669
LEGS++G WWL+MIG+ILD+GSTFERVGSRQLAGLLIAVWVR +LK +VGD+D AAVPCG
Sbjct: 608 LEGSSLGQWWLEMIGRILDEGSTFERVGSRQLAGLLIAVWVRNSLKGHVGDIDAAAVPCG 667
Query: 670 FGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCS 729
FGRAIGNKGAVGLR+RVY+R MCFVNCHFAAHLEAVNRRNADFDHVYRTM F RPSN +
Sbjct: 668 FGRAIGNKGAVGLRIRVYNRTMCFVNCHFAAHLEAVNRRNADFDHVYRTMNFVRPSNHFN 727
Query: 730 AAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQ 789
AA M+ +N + EG+P+LSEADMVIFLGDFNYRLD I+YDEARDFISQ
Sbjct: 728 TAAG-------MVMGSN-----SAEGMPDLSEADMVIFLGDFNYRLDDISYDEARDFISQ 775
Query: 790 RCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAG 836
RCFDWLRERDQLRAEMEAGNVFQGMREA I+FPPTYKF+KH GLAG
Sbjct: 776 RCFDWLRERDQLRAEMEAGNVFQGMREAIIRFPPTYKFDKHQPGLAG 822
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574838|ref|XP_003555551.1| PREDICTED: type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1117 bits (2889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/821 (68%), Positives = 662/821 (80%), Gaps = 36/821 (4%)
Query: 31 FDRYSSS---LSPSSSEDDETESHPSNSTIKRLDYMMEFLERKLSSSATTTNEKKRFASS 87
FDR +SS L SSS+DD + SH ST +RLDYM++FL+RKLSS + +R +S
Sbjct: 59 FDRQTSSRIYLHSSSSDDDVSPSHSIQSTNRRLDYMLQFLDRKLSSD----HAHRRHSSG 114
Query: 88 S---SLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQ 144
S LPE++ KGG +F+ P R A+HPARPPSLE++PHPLRETQIG FLR IV TE Q
Sbjct: 115 SRAAQLPEFVAKGGGAGIFRLPARGAVHPARPPSLELRPHPLRETQIGRFLRNIVSTESQ 174
Query: 145 LWAGGENGLRVWNLKELYDE--SESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA 202
LWA E G+R WN K+LY + V G++ +APF+ESV S +C+V DE
Sbjct: 175 LWAASECGVRFWNFKDLYASWCGVGEEEGVVARNGDEESAPFRESV-WTSPTLCLVADEG 233
Query: 203 SGVVWSGHRDGRIMCWKMNARL-------LDSDDGFGEVLSWQAHRGPVLSLCISSYGDL 255
+ +VWSGH+DG+I CWKM+ D + F E LSW AHRGPVLSL +SYGDL
Sbjct: 234 NRLVWSGHKDGKIRCWKMDDDDDDNNNNNCDWSNRFTESLSWHAHRGPVLSLTFTSYGDL 293
Query: 256 WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIK 315
WSGSEGGGIKIWP EA+EK++ L EERH+AA+ VERSY+DLRS LS NGFS++LTSD+K
Sbjct: 294 WSGSEGGGIKIWPLEAVEKSIHLTKEERHSAAIFVERSYVDLRSQLSTNGFSNMLTSDVK 353
Query: 316 NLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375
L+SD+SRAKVWSAG+ SFALWDARTRELLKVFN DGQIENR+D+S + DF++E
Sbjct: 354 YLVSDNSRAKVWSAGYFSFALWDARTRELLKVFNSDGQIENRLDVSSIQDFSVE------ 407
Query: 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWT 435
+++SS+KDK QSS GFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL +IDGMIWT
Sbjct: 408 LISSSRKDKTQSSIGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALVVTIDGMIWT 467
Query: 436 GGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWV 495
G +GLL+QWD NGNR+QDF Y ++QC CTFG QIWVGY++G VQVLDL+G+L+GGWV
Sbjct: 468 GCTSGLLVQWDGNGNRIQDFLYHSSSIQCFCTFGMQIWVGYVSGTVQVLDLKGSLIGGWV 527
Query: 496 AHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKIL 555
AH SP++KM VGAGY+F LANHGGIRGWN+TSPGPLDSIL EL GKEFLYT++EN+KIL
Sbjct: 528 AHGSPIVKMTVGAGYVFALANHGGIRGWNITSPGPLDSILRSELGGKEFLYTKIENIKIL 587
Query: 556 AGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAV 615
+GTWNVGQG+AS D+L SWLGS ASDV +VVVGLQEVEMGAGFLAMSAAKETVGLEGS+V
Sbjct: 588 SGTWNVGQGKASLDSLTSWLGSVASDVSLVVVGLQEVEMGAGFLAMSAAKETVGLEGSSV 647
Query: 616 GHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIG 675
G WWLDMI K LD+GSTFER+GSRQLAGL+IAVWV+ N++ +VGDV+VAAVPCGFGRAIG
Sbjct: 648 GQWWLDMIDKTLDEGSTFERIGSRQLAGLVIAVWVKTNIRFHVGDVEVAAVPCGFGRAIG 707
Query: 676 NKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGA 735
NKGAVGLR+RVYDRIMCFVNCHFAAHL+AV RRNADFDHVYRTM+F RP+NL + AA
Sbjct: 708 NKGAVGLRIRVYDRIMCFVNCHFAAHLDAVGRRNADFDHVYRTMSFSRPTNLLNTTAALI 767
Query: 736 SSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWL 795
+ + EG+PELSEADMV+FLGDFNYRLD I+YDEARDF+SQRCFDWL
Sbjct: 768 LEI----------GFQSAEGMPELSEADMVVFLGDFNYRLDDISYDEARDFVSQRCFDWL 817
Query: 796 RERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAG 836
RERDQLRAEMEAGNVFQGMREA I FPPTYKFE+H GLAG
Sbjct: 818 RERDQLRAEMEAGNVFQGMREAIITFPPTYKFERHQVGLAG 858
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4688596|emb|CAB41466.1| inositol 1,4,5-trisphosphate 5-phosphatase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1115 bits (2885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/813 (68%), Positives = 653/813 (80%), Gaps = 24/813 (2%)
Query: 30 IFDRYSSSLSPSSSEDDETESHPS-NSTIKRLDYMMEFLERKLSSSATTTNEKKRFASSS 88
+F+R + S S SS +D ES PS + + KR+DYM++FL+R+LS S
Sbjct: 28 LFNRSAYSSSSSSGDD---ESQPSVDDSNKRIDYMIQFLDRRLSEDGNHDGIGDG-NGSD 83
Query: 89 SLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAG 148
SLPE++GK G+ +FK P+R+A+HP RPPSL+V+PHPLRETQIG FLRT+ TE QLW G
Sbjct: 84 SLPEFVGKCGESGIFKVPIRSAVHPNRPPSLDVRPHPLRETQIGRFLRTMTSTERQLWTG 143
Query: 149 GENG-LRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK---GVSSVMCMVGDEASG 204
GE+G LRVW ELY V + TAP+KES+ G ++V+CM+GDE S
Sbjct: 144 GEDGALRVWEFSELYGSGRGLEV--------EDTAPYKESLGNEFGSAAVVCMIGDEGSR 195
Query: 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGI 264
VVWSGHRDGRI CW+ L D G E LSWQAHRGPVLS+ IS+YGD+WSGSEGG +
Sbjct: 196 VVWSGHRDGRIRCWR-----LRGDHGIEEALSWQAHRGPVLSIAISAYGDIWSGSEGGAL 250
Query: 265 KIWPWE-AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR 323
K+WPW+ A+ K+LSLK EERH AAL VERSYID R+ +S NGF++ LTSD+ L+SDH+R
Sbjct: 251 KVWPWDGALGKSLSLKMEERHMAALAVERSYIDPRNMVSANGFANTLTSDVTFLVSDHTR 310
Query: 324 AKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383
A+VWSA L+FA+WDARTR+L+KVFNIDGQ+ENR + S+ PDF E+E K K VT+SKK+
Sbjct: 311 ARVWSASPLTFAIWDARTRDLIKVFNIDGQLENRPENSVYPDFGSEEEGKMK-VTASKKE 369
Query: 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLL 443
KAQSS GFFQRSRNAIMGAADAVRR A KGGF DD+R+TEA+ S+DGMIWTG +NG+L+
Sbjct: 370 KAQSSLGFFQRSRNAIMGAADAVRRAATKGGFCDDSRKTEAIVISVDGMIWTGSSNGILM 429
Query: 444 QWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIK 503
+WD NGN LQ+F Y + C+ TF S++WVGY NG VQV DLEG LLGGWVAHS PVIK
Sbjct: 430 RWDGNGNCLQEFAYESSGILCMFTFCSRLWVGYSNGTVQVWDLEGKLLGGWVAHSGPVIK 489
Query: 504 MAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQ 563
MA+GAGY+FTLANHGGIRGWNVTSPGPLD++L ELAGKEFLY+R+ENLKILAGTWNVG+
Sbjct: 490 MAIGAGYLFTLANHGGIRGWNVTSPGPLDNVLRAELAGKEFLYSRIENLKILAGTWNVGE 549
Query: 564 GRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623
GRAS D+L+SWLG AA+ V IVVVGLQEVEMGAG LAMSAAKETVGLEGS +G WWLDMI
Sbjct: 550 GRASTDSLVSWLGCAATGVEIVVVGLQEVEMGAGVLAMSAAKETVGLEGSPLGQWWLDMI 609
Query: 624 GKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLR 683
GK LD+GS+F RVGSRQLAGLLI VWVR +LK +VGDVD AAVPCGFGRAIGNKGAVG+R
Sbjct: 610 GKTLDEGSSFVRVGSRQLAGLLICVWVRHDLKPHVGDVDAAAVPCGFGRAIGNKGAVGVR 669
Query: 684 VRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLR 743
+R+YDR++CFVNCHFAAHLEAVNRRNADFDHVYRTMTF R S+ +A AGAS V M R
Sbjct: 670 LRMYDRVLCFVNCHFAAHLEAVNRRNADFDHVYRTMTFSRQSSSLNAGVAGASFGVTMPR 729
Query: 744 STNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRA 803
N L T+E PELSEADMVIFLGDFNYRLD ITYDE RDFISQRCFDWLRE+DQL
Sbjct: 730 GGNALGVNTIEARPELSEADMVIFLGDFNYRLDDITYDETRDFISQRCFDWLREKDQLHT 789
Query: 804 EMEAGNVFQGMREADIKFPPTYKFEKHLAGLAG 836
EMEAGNVFQGMREA I+FPPTYKFE+H AGLAG
Sbjct: 790 EMEAGNVFQGMREAIIRFPPTYKFERHQAGLAG 822
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42562979|ref|NP_176736.2| Type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3 [Arabidopsis thaliana] gi|59799523|sp|Q84W55.2|IP5P4_ARATH RecName: Full=Type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3; AltName: Full=Protein FRAGILE FIBER 3 gi|56405846|gb|AAV87313.1| type II inositol polyphosphate 5-phosphatase [Arabidopsis thaliana] gi|56405854|gb|AAV87317.1| type II inositol polyphosphate 5-phosphatase [Arabidopsis thaliana] gi|332196277|gb|AEE34398.1| Type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1115 bits (2884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/813 (68%), Positives = 653/813 (80%), Gaps = 24/813 (2%)
Query: 30 IFDRYSSSLSPSSSEDDETESHPS-NSTIKRLDYMMEFLERKLSSSATTTNEKKRFASSS 88
+F+R + S S SS +D ES PS + + KR+DYM++FL+R+LS S
Sbjct: 28 LFNRSAYSSSSSSGDD---ESQPSVDDSNKRIDYMIQFLDRRLSEDGNHDGIGDG-NGSD 83
Query: 89 SLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAG 148
SLPE++GK G+ +FK P+R+A+HP RPPSL+V+PHPLRETQIG FLRT+ TE QLW G
Sbjct: 84 SLPEFVGKCGESGIFKVPIRSAVHPNRPPSLDVRPHPLRETQIGRFLRTMTSTERQLWTG 143
Query: 149 GENG-LRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK---GVSSVMCMVGDEASG 204
GE+G LRVW ELY V + TAP+KES+ G ++V+CM+GDE S
Sbjct: 144 GEDGALRVWEFSELYGSGRGLEV--------EDTAPYKESLGNEFGSAAVVCMIGDEGSR 195
Query: 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGI 264
VVWSGHRDGRI CW+ L D G E LSWQAHRGPVLS+ IS+YGD+WSGSEGG +
Sbjct: 196 VVWSGHRDGRIRCWR-----LRGDHGIEEALSWQAHRGPVLSIAISAYGDIWSGSEGGAL 250
Query: 265 KIWPWE-AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR 323
K+WPW+ A+ K+LSLK EERH AAL VERSYID R+ +S NGF++ LTSD+ L+SDH+R
Sbjct: 251 KVWPWDGALGKSLSLKMEERHMAALAVERSYIDPRNMVSANGFANTLTSDVTFLVSDHTR 310
Query: 324 AKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383
A+VWSA L+FA+WDARTR+L+KVFNIDGQ+ENR + S+ PDF E+E K K VT+SKK+
Sbjct: 311 ARVWSASPLTFAIWDARTRDLIKVFNIDGQLENRPENSVYPDFGSEEEGKMK-VTASKKE 369
Query: 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLL 443
KAQSS GFFQRSRNAIMGAADAVRR A KGGF DD+R+TEA+ S+DGMIWTG +NG+L+
Sbjct: 370 KAQSSLGFFQRSRNAIMGAADAVRRAATKGGFCDDSRKTEAIVISVDGMIWTGSSNGILM 429
Query: 444 QWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIK 503
+WD NGN LQ+F Y + C+ TF S++WVGY NG VQV DLEG LLGGWVAHS PVIK
Sbjct: 430 RWDGNGNCLQEFAYESSGILCMFTFCSRLWVGYSNGTVQVWDLEGKLLGGWVAHSGPVIK 489
Query: 504 MAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQ 563
MA+GAGY+FTLANHGGIRGWNVTSPGPLD++L ELAGKEFLY+R+ENLKILAGTWNVG+
Sbjct: 490 MAIGAGYLFTLANHGGIRGWNVTSPGPLDNVLRAELAGKEFLYSRIENLKILAGTWNVGE 549
Query: 564 GRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623
GRAS D+L+SWLG AA+ V IVVVGLQEVEMGAG LAMSAAKETVGLEGS +G WWLDMI
Sbjct: 550 GRASTDSLVSWLGCAATGVEIVVVGLQEVEMGAGVLAMSAAKETVGLEGSPLGQWWLDMI 609
Query: 624 GKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLR 683
GK LD+GS+F RVGSRQLAGLLI VWVR +LK +VGDVD AAVPCGFGRAIGNKGAVG+R
Sbjct: 610 GKTLDEGSSFVRVGSRQLAGLLICVWVRHDLKPHVGDVDAAAVPCGFGRAIGNKGAVGVR 669
Query: 684 VRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLR 743
+R+YDR++CFVNCHFAAHLEAVNRRNADFDHVYRTMTF R S+ +A AGAS V M R
Sbjct: 670 LRMYDRVLCFVNCHFAAHLEAVNRRNADFDHVYRTMTFSRQSSSLNAGVAGASFGVTMPR 729
Query: 744 STNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRA 803
N L T+E PELSEADMVIFLGDFNYRLD ITYDE RDFISQRCFDWLRE+DQL
Sbjct: 730 GGNALGVNTIEARPELSEADMVIFLGDFNYRLDDITYDETRDFISQRCFDWLREKDQLHT 789
Query: 804 EMEAGNVFQGMREADIKFPPTYKFEKHLAGLAG 836
EMEAGNVFQGMREA I+FPPTYKFE+H AGLAG
Sbjct: 790 EMEAGNVFQGMREAIIRFPPTYKFERHQAGLAG 822
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297841089|ref|XP_002888426.1| hypothetical protein ARALYDRAFT_475657 [Arabidopsis lyrata subsp. lyrata] gi|297334267|gb|EFH64685.1| hypothetical protein ARALYDRAFT_475657 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1114 bits (2882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/836 (66%), Positives = 660/836 (78%), Gaps = 25/836 (2%)
Query: 8 DFSDDVVS---SATSHSYTDHQGTRIFDRYSSSLSPSSSEDDETESHPS-NSTIKRLDYM 63
D +DDV S +++ + +F+R + S S SS +D ES PS + + KR+DYM
Sbjct: 7 DQNDDVFSFFSPPYESTFSAATPSTLFNRSAYSSSSSSGDD---ESQPSVDDSNKRIDYM 63
Query: 64 MEFLERKLSSSATTTNEKKRFASSSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKP 123
++FL+R+LS SLPE++GK G+ +FK P+R+A+HP RPPSL+V+P
Sbjct: 64 IQFLDRRLSEDGNHDGIGDG-NGPDSLPEFVGKCGESGIFKVPIRSAVHPNRPPSLDVRP 122
Query: 124 HPLRETQIGCFLRTIVCTEEQLWAGGENG-LRVWNLKELYDESESDSVSVSKSKGEDGTA 182
HPLRETQIG FLRT+ TE QLW GGE+G LRVW ELY V + TA
Sbjct: 123 HPLRETQIGRFLRTMTSTERQLWTGGEDGALRVWEFSELYGSGRGLEV--------EDTA 174
Query: 183 PFKESVKGV--SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH 240
P+KES+ S+V+CM+GDE S VVWSGHRDGRI CW++ D G E LSWQAH
Sbjct: 175 PYKESLGNEIGSAVVCMIGDEGSRVVWSGHRDGRIRCWRLRG-----DHGIEEALSWQAH 229
Query: 241 RGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300
RGPVLS+ +S+YGD+WSGSEGG +K+WPW+A+ K+LSLK EERH AAL VERSYID R+
Sbjct: 230 RGPVLSIAVSAYGDIWSGSEGGALKVWPWDALGKSLSLKMEERHMAALSVERSYIDPRNM 289
Query: 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDM 360
+S NGF++ LTSD+ L+SDH+RA+VWSA L+FALWDARTR+L+KVFNIDGQ+ENR +
Sbjct: 290 VSANGFANTLTSDVTFLVSDHTRARVWSASPLTFALWDARTRDLIKVFNIDGQLENRTEN 349
Query: 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420
S+ PDF E+E K KI T+SKK+KAQSS GFFQRSRNA+MGAADAVRR A KGGF DD+R
Sbjct: 350 SVYPDFGSEEEGKMKI-TASKKEKAQSSLGFFQRSRNALMGAADAVRRAATKGGFCDDSR 408
Query: 421 RTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGI 480
+TEA+ S+DG+IWTG +NG+L++WD NGN LQ+F Y + C+ TF S++WVGY NG
Sbjct: 409 KTEAIVISVDGLIWTGSSNGVLMRWDGNGNCLQEFSYQSSGILCMFTFCSRLWVGYSNGT 468
Query: 481 VQVLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELA 540
VQVLDLEG LLGGWVAHS PVIKMA+GAGY+FTLANHGGIRGWNVTSPGPLD++L ELA
Sbjct: 469 VQVLDLEGKLLGGWVAHSGPVIKMAIGAGYLFTLANHGGIRGWNVTSPGPLDNVLRAELA 528
Query: 541 GKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLA 600
GKEFLY+R+ENLKILAGTWNVG+GRAS D+L+SWLG A+ V IVVVGLQEVEMGAG LA
Sbjct: 529 GKEFLYSRIENLKILAGTWNVGEGRASTDSLVSWLGCTATGVEIVVVGLQEVEMGAGVLA 588
Query: 601 MSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGD 660
MSAAKETVGLEGS +G WWLDMIGK LD+GS+F RVGSRQLAGLLI VWVR +LK YVGD
Sbjct: 589 MSAAKETVGLEGSPLGQWWLDMIGKTLDEGSSFVRVGSRQLAGLLICVWVRHDLKPYVGD 648
Query: 661 VDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMT 720
VD AAVPCGFGRAIGNKGAVG+R+R+YDR++CFVNCHFAAHL+AVNRRNADFDHVYRTMT
Sbjct: 649 VDAAAVPCGFGRAIGNKGAVGVRLRMYDRVLCFVNCHFAAHLDAVNRRNADFDHVYRTMT 708
Query: 721 FCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITY 780
F R S+ +A AGAS V + R N VE PELSEADM+IFLGDFNYRLD ITY
Sbjct: 709 FSRQSSSLNAGVAGASFGVSVPRGGNATGVNIVEARPELSEADMIIFLGDFNYRLDDITY 768
Query: 781 DEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAG 836
DE RDFISQRCFDWLRE+DQL AEMEAGNVFQGMREA I+FPPTYKFE+H AGLAG
Sbjct: 769 DETRDFISQRCFDWLREKDQLHAEMEAGNVFQGMREAIIRFPPTYKFERHQAGLAG 824
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|28393619|gb|AAO42229.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1113 bits (2879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/813 (68%), Positives = 652/813 (80%), Gaps = 24/813 (2%)
Query: 30 IFDRYSSSLSPSSSEDDETESHPS-NSTIKRLDYMMEFLERKLSSSATTTNEKKRFASSS 88
+F+R + S S SS +D ES PS + + KR+DYM++FL+R+LS S
Sbjct: 28 LFNRSAYSSSSSSGDD---ESQPSVDDSNKRIDYMIQFLDRRLSEDGNHDGIGDG-NGSD 83
Query: 89 SLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAG 148
SLPE++GK G+ +FK P+R+A+HP RPPSL+V+PHPLRETQIG FLRT+ TE QLW G
Sbjct: 84 SLPEFVGKCGESGIFKVPIRSAVHPNRPPSLDVRPHPLRETQIGRFLRTMTSTERQLWTG 143
Query: 149 GENG-LRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK---GVSSVMCMVGDEASG 204
GE+G LRVW ELY V + TAP+KES+ G ++V+CM+GDE S
Sbjct: 144 GEDGALRVWEFSELYGSGRGLEV--------EDTAPYKESLGNEFGSAAVVCMIGDEGSR 195
Query: 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGI 264
VVWSGHRDGRI CW+ L D G E LSWQAHRGPVLS+ IS+YGD+WSGSEGG +
Sbjct: 196 VVWSGHRDGRIRCWR-----LRGDHGIEEALSWQAHRGPVLSIAISAYGDIWSGSEGGAL 250
Query: 265 KIWPWE-AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR 323
K+WPW+ A+ K+LSLK EERH AAL VERSYID R+ +S NGF++ LTSD+ L+SDH+R
Sbjct: 251 KVWPWDGALGKSLSLKMEERHMAALAVERSYIDPRNMVSANGFANTLTSDVTFLVSDHTR 310
Query: 324 AKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383
A+VWSA L+FA+WDARTR+L+KVFNIDGQ+ENR + S+ PDF E+E K K VT+SKK+
Sbjct: 311 ARVWSASPLTFAIWDARTRDLIKVFNIDGQLENRPENSVYPDFGSEEEGKMK-VTASKKE 369
Query: 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLL 443
KAQSS GFFQRSRNAIMGAADAVRR A KGGF DD+R+TEA+ S+DGMIWTG +NG+L+
Sbjct: 370 KAQSSLGFFQRSRNAIMGAADAVRRAATKGGFCDDSRKTEAIVISVDGMIWTGSSNGILM 429
Query: 444 QWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIK 503
+WD NGN LQ+F Y + C+ TF S++WVGY NG VQV DLEG LLGGWVAHS PVIK
Sbjct: 430 RWDGNGNCLQEFAYESSGILCMFTFCSRLWVGYSNGTVQVWDLEGKLLGGWVAHSGPVIK 489
Query: 504 MAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQ 563
MA+GAGY+FTLANHGGIRGWNVTSPGPLD++L ELAGKEFLY+R+ENLKILAGTWNVG+
Sbjct: 490 MAIGAGYLFTLANHGGIRGWNVTSPGPLDNVLRAELAGKEFLYSRIENLKILAGTWNVGE 549
Query: 564 GRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623
GRAS D+L+SWLG AA+ V IVVVGLQEVEMGA LAMSAAKETVGLEGS +G WWLDMI
Sbjct: 550 GRASTDSLVSWLGCAATGVEIVVVGLQEVEMGARVLAMSAAKETVGLEGSPLGQWWLDMI 609
Query: 624 GKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLR 683
GK LD+GS+F RVGSRQLAGLLI VWVR +LK +VGDVD AAVPCGFGRAIGNKGAVG+R
Sbjct: 610 GKTLDEGSSFVRVGSRQLAGLLICVWVRHDLKPHVGDVDAAAVPCGFGRAIGNKGAVGVR 669
Query: 684 VRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLR 743
+R+YDR++CFVNCHFAAHLEAVNRRNADFDHVYRTMTF R S+ +A AGAS V M R
Sbjct: 670 LRMYDRVLCFVNCHFAAHLEAVNRRNADFDHVYRTMTFSRQSSSLNAGVAGASFGVTMPR 729
Query: 744 STNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRA 803
N L T+E PELSEADMVIFLGDFNYRLD ITYDE RDFISQRCFDWLRE+DQL
Sbjct: 730 GGNALGVNTIEARPELSEADMVIFLGDFNYRLDDITYDETRDFISQRCFDWLREKDQLHT 789
Query: 804 EMEAGNVFQGMREADIKFPPTYKFEKHLAGLAG 836
EMEAGNVFQGMREA I+FPPTYKFE+H AGLAG
Sbjct: 790 EMEAGNVFQGMREAIIRFPPTYKFERHQAGLAG 822
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535258|ref|XP_003536165.1| PREDICTED: type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1112 bits (2876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/792 (70%), Positives = 651/792 (82%), Gaps = 25/792 (3%)
Query: 54 NSTIKRLDYMMEFLERKLSSSATTTNEKKRFASSSS---LPEYIGKGGDIPMFKPPVRAA 110
ST +RLDYM++FL+RKLS+ + +R +S S LPE++ KGG +F+ P R A
Sbjct: 45 QSTNRRLDYMLQFLDRKLSAD----HGHRRHSSGSRAAPLPEFVAKGGGAGIFRLPARGA 100
Query: 111 LHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAGGENGLRVWNLKELYDE-SESDS 169
+HPARPPSLE++PHPLRETQIG FLR IV ++ QLWA E G+R WN K+LY
Sbjct: 101 VHPARPPSLELRPHPLRETQIGRFLRNIVSSQSQLWAASECGVRFWNFKDLYASWCGVGG 160
Query: 170 VSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS-- 227
V G++ +APF+ESV S +C+V DE + +VWSGH+DG+I CWKM+ ++
Sbjct: 161 EEVVARSGDEESAPFRESV-WTSPALCLVADEGNRLVWSGHKDGKIRCWKMDDDDDNNDN 219
Query: 228 ---DDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERH 284
+ F E LSW AHRGPVLSL +SYGDLWSGSEGGGIKIWPWEA+EK++ L EERH
Sbjct: 220 CDWSNRFTESLSWHAHRGPVLSLTFTSYGDLWSGSEGGGIKIWPWEAVEKSIHLTKEERH 279
Query: 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTREL 344
+A + VERSY+DLRS LS NGFS++LTSD+K L+SD+ RAKVWSAG+ SFALWDARTREL
Sbjct: 280 SAVIFVERSYVDLRSQLSTNGFSNMLTSDVKYLVSDNLRAKVWSAGYFSFALWDARTREL 339
Query: 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD 404
LKVFN +GQIENR+D+S + DF++E +V+SS+KDK QSS GFFQRSRNAIMGAAD
Sbjct: 340 LKVFNSEGQIENRLDVSSIQDFSVE------LVSSSRKDKTQSSIGFFQRSRNAIMGAAD 393
Query: 405 AVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQC 464
AVRRVAAKGGFGDD+RR EAL +IDGMIWTG +GLL+QWD NGNR+QDF Y A+QC
Sbjct: 394 AVRRVAAKGGFGDDHRRIEALVVTIDGMIWTGCTSGLLVQWDGNGNRIQDFLYHSSAIQC 453
Query: 465 LCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWN 524
CTFG QIWVGY++G VQVLDL+GNL+GGWVAH SP++KM VGAGY+F LANHGGIRGWN
Sbjct: 454 FCTFGMQIWVGYVSGTVQVLDLKGNLIGGWVAHGSPIVKMTVGAGYVFALANHGGIRGWN 513
Query: 525 VTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGI 584
+TSPGPLDSIL EL GKEFLYT++EN+KIL+GTWNVGQG+AS D+L SWLGS SDV +
Sbjct: 514 ITSPGPLDSILRSELGGKEFLYTKIENIKILSGTWNVGQGKASLDSLTSWLGSVVSDVSL 573
Query: 585 VVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGL 644
VVVGLQEVEMGAGFLAMSAAKETVGLEGS+VG WWLDMIGK LD+GSTFER+GSRQLAGL
Sbjct: 574 VVVGLQEVEMGAGFLAMSAAKETVGLEGSSVGQWWLDMIGKTLDEGSTFERIGSRQLAGL 633
Query: 645 LIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEA 704
+IAVWV+ N++ +VGDV+VAAVPCGFGRAIGNKGAVGLR+RVYDRIMCFVNCHFAAHL+A
Sbjct: 634 VIAVWVKTNIRFHVGDVEVAAVPCGFGRAIGNKGAVGLRIRVYDRIMCFVNCHFAAHLDA 693
Query: 705 VNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADM 764
V RRNADFDHVYRTM+F RP+NL + AAG SS V R TN + EG+PELSEADM
Sbjct: 694 VGRRNADFDHVYRTMSFSRPTNLLNTTAAGTSSSVPTFRGTN-----SAEGMPELSEADM 748
Query: 765 VIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPT 824
V+FLGDFNYRLD I+YDEARDF+SQRCFDWLRERDQLRAEMEAGNVFQGMREA I FPPT
Sbjct: 749 VVFLGDFNYRLDDISYDEARDFVSQRCFDWLRERDQLRAEMEAGNVFQGMREAVITFPPT 808
Query: 825 YKFEKHLAGLAG 836
YKFE+H AGLAG
Sbjct: 809 YKFERHQAGLAG 820
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442781|ref|XP_004139159.1| PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1103 bits (2854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/862 (65%), Positives = 673/862 (78%), Gaps = 38/862 (4%)
Query: 1 MDPPPLIDFSDDVVSSAT---SHSYTDH-----QGTRIFDRYSSSLSPS----------- 41
M+PPPLID D ++ ++SYT + G ++ ++ + S
Sbjct: 1 MEPPPLIDLRDGDGDDSSSSFTNSYTQNLNHLNHGFNYLNQEDTTRTYSPQFFDSSSSSS 60
Query: 42 SSEDDETESHPSNSTIKRLDYMMEFLERKLSSSATTTNEK-------KRFASSSSLPEYI 94
+E++ S+ ST KRLDYM++FL+RKLSS + + + + SSSSLPE+I
Sbjct: 61 DNENNGVSSNSVESTTKRLDYMLQFLDRKLSSQSVSYSNRDGDIQDSDYDGSSSSLPEFI 120
Query: 95 GKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAGGENGLR 154
G+GG +F+ PVRAA+HP RPPSLEV+PHPLRETQIGCF RT+ +E QLWAG E G+R
Sbjct: 121 GRGGGTGIFRLPVRAAVHPHRPPSLEVRPHPLRETQIGCFFRTVAGSESQLWAGSEYGVR 180
Query: 155 VWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGR 214
WN ++LY +E V G++ TAPF+ESV+ S +C+V DE + +VWSGH+DGR
Sbjct: 181 FWNFEDLYAAAEDMVVR----GGDEETAPFRESVR-TSPTLCLVADEGNRLVWSGHKDGR 235
Query: 215 IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEK 274
I W+M+ L+S+D F E LSWQAHRGPV SL ++SYGDLWSGSEGG +K+W WEAIE+
Sbjct: 236 IRSWRMDIPSLNSNDHFTEALSWQAHRGPVFSLVMTSYGDLWSGSEGGALKVWSWEAIER 295
Query: 275 ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSF 334
ALS+ E H A+L++ERSY+DLR+ +SV+ FS+ T D+K LLSD S AKVWS LSF
Sbjct: 296 ALSMTEGENHMASLLMERSYVDLRTQVSVS-FSNTFTWDVKYLLSDDSTAKVWSGSDLSF 354
Query: 335 ALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR 394
ALWDARTRELLKVFN DGQ+ENR+DM+ + DF +E V+ SKK+K QS+FGFFQR
Sbjct: 355 ALWDARTRELLKVFNTDGQLENRIDMTSVQDFTLEP------VSFSKKEKTQSAFGFFQR 408
Query: 395 SRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQD 454
SRNAIMGAADAVRR A KG FGDDNRRTEAL +IDGMIWTG +GLL+QWD +GNRLQD
Sbjct: 409 SRNAIMGAADAVRRAAVKGAFGDDNRRTEALVITIDGMIWTGCTSGLLVQWDKHGNRLQD 468
Query: 455 FQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTL 514
F + AVQCLCTFGS++WVGY +G VQVLDL+G LLGGWVAHS PVI+M G+GYIFTL
Sbjct: 469 FHHHSHAVQCLCTFGSRVWVGYASGTVQVLDLKGRLLGGWVAHSCPVIEMCAGSGYIFTL 528
Query: 515 ANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISW 574
ANHGGIRGWNVTSPGPLDSIL ELA KEF+YTRMENLKI GTWNVGQ +AS D+LISW
Sbjct: 529 ANHGGIRGWNVTSPGPLDSILRSELAAKEFMYTRMENLKIFTGTWNVGQEKASPDSLISW 588
Query: 575 LGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFE 634
LGS SDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGS++G WWLDMIGK L +GSTF+
Sbjct: 589 LGSVVSDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSSLGQWWLDMIGKTLGEGSTFQ 648
Query: 635 RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFV 694
RVGSRQLAGLLIA+WVR N++ YVGDVD AAVPCGFGRAIGNKGAVGLR+RV+DR++CFV
Sbjct: 649 RVGSRQLAGLLIAIWVRSNIRAYVGDVDAAAVPCGFGRAIGNKGAVGLRIRVFDRVLCFV 708
Query: 695 NCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVE 754
NCHFAAHLEAVNRRNADFDHVYR M+F RPSN AA +S Q +RS+N G +VE
Sbjct: 709 NCHFAAHLEAVNRRNADFDHVYRNMSFHRPSNPFGTTAACSSPTAQTVRSSNAFVGSSVE 768
Query: 755 GVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGM 814
PELSE+D++IFLGDFNYRL+G++YDEARDFISQRCFDWL+E+DQLR EME+GNVFQGM
Sbjct: 769 MTPELSESDLIIFLGDFNYRLNGVSYDEARDFISQRCFDWLKEKDQLRTEMESGNVFQGM 828
Query: 815 READIKFPPTYKFEKHLAGLAG 836
REA I FPPTYKFE+ GL+G
Sbjct: 829 REAVITFPPTYKFERQQQGLSG 850
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449485393|ref|XP_004157154.1| PREDICTED: LOW QUALITY PROTEIN: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1095 bits (2832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/862 (65%), Positives = 668/862 (77%), Gaps = 38/862 (4%)
Query: 1 MDPPPLIDFSDDVVSSAT---SHSYTDH-----QGTRIFDRYSSSLSPS----------- 41
M+PPPLID D ++ ++SYT + G ++ ++ + S
Sbjct: 1 MEPPPLIDLRDGDGDDSSSSFTNSYTQNLNHLNHGFNYLNQEDTTRTYSPQFFDSSSSSS 60
Query: 42 SSEDDETESHPSNSTIKRLDYMMEFLERKLSSSATTTNEK-------KRFASSSSLPEYI 94
+E++ S+ ST KRLDYM++FL+RKLSS + + + SSSSLPE+I
Sbjct: 61 DNENNGVSSNSVESTTKRLDYMLQFLDRKLSSQSVSYSNHDGDIQDSDYDGSSSSLPEFI 120
Query: 95 GKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAGGENGLR 154
G+GG +F+ PVRAA+HP RPPSLEV+PHPLRETQIGCF RT+ +E QLWAG E G+R
Sbjct: 121 GRGGGTGIFRLPVRAAVHPHRPPSLEVRPHPLRETQIGCFFRTVAGSESQLWAGSEYGVR 180
Query: 155 VWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGR 214
WN ++LY +E V G++ TAPF+ESV+ S +C+V DE + +VWSGH+DGR
Sbjct: 181 FWNFEDLYAAAEDMVVR----GGDEETAPFRESVR-TSPTLCLVADEGNRLVWSGHKDGR 235
Query: 215 IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEK 274
I W+M+ L+S+D F E LSWQAHRGPV SL S GDLWSGSEGG +K+W WEAIE+
Sbjct: 236 IRSWRMDIPSLNSNDHFTEALSWQAHRGPVFSLSFSLLGDLWSGSEGGALKVWSWEAIER 295
Query: 275 ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSF 334
ALS+ E H A+L+VERSY+DLR+ +SV+ FS+ T D+K LLSD S AKVWS LSF
Sbjct: 296 ALSMTEGENHMASLLVERSYVDLRTQVSVS-FSNTFTWDVKYLLSDDSTAKVWSGSDLSF 354
Query: 335 ALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR 394
ALWDARTRELLKVFN DGQ+ENR+DM+ + DF +E V+ SKK+K QS+FGFFQR
Sbjct: 355 ALWDARTRELLKVFNTDGQLENRIDMTSVQDFTLEP------VSFSKKEKTQSAFGFFQR 408
Query: 395 SRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQD 454
SRNAIMGAADAVRR A KG FGDDNRRTEAL +IDGMIWTG +GLL+QWD +GNRLQD
Sbjct: 409 SRNAIMGAADAVRRAAVKGAFGDDNRRTEALVITIDGMIWTGCTSGLLVQWDKHGNRLQD 468
Query: 455 FQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTL 514
F + AVQCLCTFGS++WVGY +G VQVLDL+G LLGGWVAHS PVI+M G+GYIFTL
Sbjct: 469 FHHHSHAVQCLCTFGSRVWVGYASGTVQVLDLKGRLLGGWVAHSCPVIEMCAGSGYIFTL 528
Query: 515 ANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISW 574
ANHGGIRGWNVTSPGPLDSIL ELA KEF+YTRMENLKI GTWNVGQ +AS D+LISW
Sbjct: 529 ANHGGIRGWNVTSPGPLDSILRSELAAKEFMYTRMENLKIFTGTWNVGQEKASPDSLISW 588
Query: 575 LGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFE 634
LGS SDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGS++G WWLDMIGK L +GSTF+
Sbjct: 589 LGSVVSDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSSLGQWWLDMIGKTLGEGSTFQ 648
Query: 635 RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFV 694
RVGSRQLAGLLIA+WVR N++ YVGDVD AAVPCGFGRAIGNKGAVGLR+RV+DR++CFV
Sbjct: 649 RVGSRQLAGLLIAIWVRSNIRAYVGDVDAAAVPCGFGRAIGNKGAVGLRIRVFDRVLCFV 708
Query: 695 NCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVE 754
NCHFAAHLEAVNRRNADFDHVYR M+F RPSN AA +S Q +RS+N G +VE
Sbjct: 709 NCHFAAHLEAVNRRNADFDHVYRNMSFHRPSNPFGTTAACSSPTAQTVRSSNAFVGSSVE 768
Query: 755 GVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGM 814
PELSE+D++IFLGDFNYRL+G++YDEARDFISQRCFDWL+E+DQLR EME+GN FQGM
Sbjct: 769 MTPELSESDLIIFLGDFNYRLNGVSYDEARDFISQRCFDWLKEKDQLRTEMESGNXFQGM 828
Query: 815 READIKFPPTYKFEKHLAGLAG 836
REA I FPPTYKFE+ GL+G
Sbjct: 829 REAVITFPPTYKFERQQQGLSG 850
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 838 | ||||||
| TAIR|locus:2034141 | 1101 | FRA3 "FRAGILE FIBER3" [Arabido | 0.967 | 0.736 | 0.658 | 3.2e-294 | |
| TAIR|locus:2031933 | 1170 | 5PTASE13 "inositol-polyphospha | 0.754 | 0.540 | 0.630 | 6.4e-256 | |
| UNIPROTKB|F1NLK6 | 707 | INPP5B "Uncharacterized protei | 0.220 | 0.261 | 0.282 | 1.4e-27 | |
| UNIPROTKB|E1BB73 | 1005 | E1BB73 "Uncharacterized protei | 0.220 | 0.184 | 0.276 | 3.9e-26 | |
| DICTYBASE|DDB_G0292392 | 1379 | Dd5P3 "inositol 5-phosphatase" | 0.255 | 0.155 | 0.3 | 4e-26 | |
| MGI|MGI:103257 | 993 | Inpp5b "inositol polyphosphate | 0.218 | 0.184 | 0.279 | 3.6e-25 | |
| TAIR|locus:2141095 | 646 | IP5PII "AT4G18010" [Arabidopsi | 0.107 | 0.139 | 0.417 | 1.3e-24 | |
| ZFIN|ZDB-GENE-061110-61 | 952 | ocrl "oculocerebrorenal syndro | 0.217 | 0.191 | 0.293 | 2.8e-24 | |
| DICTYBASE|DDB_G0284187 | 1800 | Dd5P2 "inositol 5-phosphatase" | 0.200 | 0.093 | 0.350 | 1.2e-23 | |
| TAIR|locus:2077314 | 547 | AT3G63240 [Arabidopsis thalian | 0.114 | 0.175 | 0.413 | 1.1e-22 |
| TAIR|locus:2034141 FRA3 "FRAGILE FIBER3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2825 (999.5 bits), Expect = 3.2e-294, P = 3.2e-294
Identities = 549/834 (65%), Positives = 645/834 (77%)
Query: 8 DFSDDVVSSATSHSYTDHQGTRIFDRYXXXXXXXXXXXXXXXXXXXNSTIKRLDYMMEFL 67
D +DDV S S S++ + +F+R + + KR+DYM++FL
Sbjct: 7 DQNDDVFSFF-SPSFSAATPSTLFNR--SAYSSSSSSGDDESQPSVDDSNKRIDYMIQFL 63
Query: 68 ERKLSSSATTTNEKKRFASSSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLR 127
+R+LS S SLPE++GK G+ +FK P+R+A+HP RPPSL+V+PHPLR
Sbjct: 64 DRRLSEDGNHDGIGDG-NGSDSLPEFVGKCGESGIFKVPIRSAVHPNRPPSLDVRPHPLR 122
Query: 128 ETQIGCFLRTIVCTEEQLWAGGENG-LRVWNLKELYXXXXXXXXXXXXXXXXXXTAPFKE 186
ETQIG FLRT+ TE QLW GGE+G LRVW ELY TAP+KE
Sbjct: 123 ETQIGRFLRTMTSTERQLWTGGEDGALRVWEFSELYGSGRGLEVED--------TAPYKE 174
Query: 187 SVK---GVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGP 243
S+ G ++V+CM+GDE S VVWSGHRDGRI CW++ D G E LSWQAHRGP
Sbjct: 175 SLGNEFGSAAVVCMIGDEGSRVVWSGHRDGRIRCWRLRG-----DHGIEEALSWQAHRGP 229
Query: 244 VLSLCISSYGDLWSGSEGGGIKIWPWE-AIEKALSLKPEERHTAALIVERSYIDLRSHLS 302
VLS+ IS+YGD+WSGSEGG +K+WPW+ A+ K+LSLK EERH AAL VERSYID R+ +S
Sbjct: 230 VLSIAISAYGDIWSGSEGGALKVWPWDGALGKSLSLKMEERHMAALAVERSYIDPRNMVS 289
Query: 303 VNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSL 362
NGF++ LTSD+ L+SDH+RA+VWSA L+FA+WDARTR+L+KVFNIDGQ+ENR + S+
Sbjct: 290 ANGFANTLTSDVTFLVSDHTRARVWSASPLTFAIWDARTRDLIKVFNIDGQLENRPENSV 349
Query: 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422
PDF E+E K K VT+SKK+KAQSS GFFQRSRNAIMGAADAVRR A KGGF DD+R+T
Sbjct: 350 YPDFGSEEEGKMK-VTASKKEKAQSSLGFFQRSRNAIMGAADAVRRAATKGGFCDDSRKT 408
Query: 423 EALTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQ 482
EA+ S+DGMIWTG +NG+L++WD NGN LQ+F Y + C+ TF S++WVGY NG VQ
Sbjct: 409 EAIVISVDGMIWTGSSNGILMRWDGNGNCLQEFAYESSGILCMFTFCSRLWVGYSNGTVQ 468
Query: 483 VLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGK 542
V DLEG LLGGWVAHS PVIKMA+GAGY+FTLANHGGIRGWNVTSPGPLD++L ELAGK
Sbjct: 469 VWDLEGKLLGGWVAHSGPVIKMAIGAGYLFTLANHGGIRGWNVTSPGPLDNVLRAELAGK 528
Query: 543 EFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMS 602
EFLY+R+ENLKILAGTWNVG+GRAS D+L+SWLG AA+ V IVVVGLQEVEMGAG LAMS
Sbjct: 529 EFLYSRIENLKILAGTWNVGEGRASTDSLVSWLGCAATGVEIVVVGLQEVEMGAGVLAMS 588
Query: 603 AAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVD 662
AAKETVGLEGS +G WWLDMIGK LD+GS+F RVGSRQLAGLLI VWVR +LK +VGDVD
Sbjct: 589 AAKETVGLEGSPLGQWWLDMIGKTLDEGSSFVRVGSRQLAGLLICVWVRHDLKPHVGDVD 648
Query: 663 VAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFC 722
AAVPCGFGRAIGNKGAVG+R+R+YDR++CFVNCHFAAHLEAVNRRNADFDHVYRTMTF
Sbjct: 649 AAAVPCGFGRAIGNKGAVGVRLRMYDRVLCFVNCHFAAHLEAVNRRNADFDHVYRTMTFS 708
Query: 723 RPSNLCXXXXXXXXXVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDE 782
R S+ V M R N L T+E PELSEADMVIFLGDFNYRLD ITYDE
Sbjct: 709 RQSSSLNAGVAGASFGVTMPRGGNALGVNTIEARPELSEADMVIFLGDFNYRLDDITYDE 768
Query: 783 ARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAG 836
RDFISQRCFDWLRE+DQL EMEAGNVFQGMREA I+FPPTYKFE+H AGLAG
Sbjct: 769 TRDFISQRCFDWLREKDQLHTEMEAGNVFQGMREAIIRFPPTYKFERHQAGLAG 822
|
|
| TAIR|locus:2031933 5PTASE13 "inositol-polyphosphate 5-phosphatase 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2159 (765.1 bits), Expect = 6.4e-256, Sum P(2) = 6.4e-256
Identities = 406/644 (63%), Positives = 499/644 (77%)
Query: 90 LPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAGG 149
LPE+IG GG +FK PVRAA+HP RPP LE++PHPLRETQ G FLR I CTE QLWAG
Sbjct: 109 LPEFIGAGGGSGIFKVPVRAAVHPGRPPCLELRPHPLRETQTGRFLRNIACTETQLWAGQ 168
Query: 150 ENGLRVWNLKELYXXXXXXXXXXXXXXXXXXTAPFKESVKGVSSVMCMVGDEASGVVWSG 209
ENG+R WNL++ Y TAPF ESV S MC+V D+++ ++WSG
Sbjct: 169 ENGIRFWNLEDAYEAGCGIGGQVPRGDED--TAPFHESVT-TSPTMCLVADQSNKLLWSG 225
Query: 210 HRDGRIMCWKMNARLL--DSDDG--FGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIK 265
H+DG+I WKM+ + D DD F E +SW AHRGPV S+ ISSYGD+WS SEGG IK
Sbjct: 226 HKDGKIRAWKMDQSSVSHDDDDSDPFKERVSWLAHRGPVNSIVISSYGDMWSCSEGGVIK 285
Query: 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAK 325
IWPW+ +EK+L LKPEE+H AAL+VERS IDLRS ++VNG SI +S++K LL+D RAK
Sbjct: 286 IWPWDTLEKSLLLKPEEKHMAALLVERSAIDLRSQVTVNGTCSISSSEVKFLLADSVRAK 345
Query: 326 VWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKA 385
VW+ LSF++WDAR+++LLKV N+DGQ+ENR D+ + D ++DE K K ++SK++K
Sbjct: 346 VWAVQSLSFSIWDARSKDLLKVLNVDGQVENRGDLPPIQDQQVDDEMKLKFFSASKREKP 405
Query: 386 QSSFGFFQRSRNAIMGAADAVRRVAAK--GGFGDDNRRTEALTTSIDGMIWTGGANGLLL 443
Q GF QRSRNAIMGAA AVRRVA + G F +D R+TEA+ ++DG IWTG +GL++
Sbjct: 406 Q---GFLQRSRNAIMGAAGAVRRVATRSAGAFSEDTRKTEAIVLAVDGTIWTGSISGLIV 462
Query: 444 QWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIK 503
QWD NGNRL+D + V C CTFG +I+VGY +G +QVLDL+G L+ WV+H+ PVIK
Sbjct: 463 QWDGNGNRLRDVNHHHRPVLCFCTFGDRIYVGYASGYIQVLDLDGKLISSWVSHNEPVIK 522
Query: 504 MAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQ 563
+A G G+IF+LA HGG+RGW VTSPGPLD+I+ EL+ KE LY R +N++IL GTWNVGQ
Sbjct: 523 LAAGGGFIFSLATHGGVRGWYVTSPGPLDNIIRTELSQKETLYARQDNVRILIGTWNVGQ 582
Query: 564 GRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623
GRAS DAL+SWLGS SDVGIV VGLQEVEMGAGFLAMSAAKETVGLEGSAVG WW+D I
Sbjct: 583 GRASHDALMSWLGSVTSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAVGQWWIDAI 642
Query: 624 GKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLR 683
GK LD+ +TFER+GSRQLAGLLI++W RK+++ +VGD+DVAAVPCGFGRAIGNKG VGLR
Sbjct: 643 GKALDEKNTFERMGSRQLAGLLISLWARKDIRTHVGDLDVAAVPCGFGRAIGNKGGVGLR 702
Query: 684 VRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNL 727
+RVYDRIMCFVNCH AAHLEAVNRRNADF+H++R M F R NL
Sbjct: 703 IRVYDRIMCFVNCHLAAHLEAVNRRNADFNHIFRLMVFSRGQNL 746
|
|
| UNIPROTKB|F1NLK6 INPP5B "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 242 (90.2 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 55/195 (28%), Positives = 100/195 (51%)
Query: 529 GPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVG 588
G D+I+ +L +E YT ++N + GT+NV G++ +++L WL ++ I VG
Sbjct: 33 GLRDTIVKSQLVQREDSYTYIQNFRFFVGTYNVN-GQSPKESLQPWLRCDSAPPDIYCVG 91
Query: 589 LQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAV 648
QE+++ +KE + W + L + + +V +L G+++ +
Sbjct: 92 FQELDL---------SKEAFFFNDTPKEEEWFKAVTDSLHPDAKYAKVKLVRLVGIMLLL 142
Query: 649 WVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRR 708
+V+ +L + +V++ V G +GNKG V +R + ++ +C VN H AAH+E RR
Sbjct: 143 YVKADLALNISEVEIETVGTGIMGRMGNKGGVAIRFKFHNTSVCVVNSHLAAHMEEYERR 202
Query: 709 NADFDHVYRTMTFCR 723
N DF + M FC+
Sbjct: 203 NQDFKDICSRMQFCQ 217
|
|
| UNIPROTKB|E1BB73 E1BB73 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 237 (88.5 bits), Expect = 3.9e-26, Sum P(3) = 3.9e-26
Identities = 54/195 (27%), Positives = 95/195 (48%)
Query: 529 GPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVG 588
G D+I+ L KE YT ++N + GT+NV G++ ++ L WL + VG
Sbjct: 325 GLRDTIVKSHLIQKEEDYTYIQNFRFFVGTYNVN-GQSPKECLRPWLSHDTQAPDVYCVG 383
Query: 589 LQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAV 648
QE+++ +KE + W + + L + + +V +L G+++ +
Sbjct: 384 FQELDL---------SKEAFFFHDTPKEEEWFKAVSEALHPDAKYAKVKLIRLVGIMLLL 434
Query: 649 WVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRR 708
+V++ Y+ +V+ V G +GNKG V +R + ++ +C VN H AAH E RR
Sbjct: 435 YVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHTEEYERR 494
Query: 709 NADFDHVYRTMTFCR 723
N D+ + M FC+
Sbjct: 495 NQDYKDICSRMQFCQ 509
|
|
| DICTYBASE|DDB_G0292392 Dd5P3 "inositol 5-phosphatase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 230 (86.0 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 69/230 (30%), Positives = 108/230 (46%)
Query: 501 VIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWN 560
V+ + +G + N G N + D + K++ + Y++ E + GT+N
Sbjct: 540 VLDLLLGLHKSMVVNNSNNGNGGNGGNGSGHDDNIRKQVQDRVKEYSKKEWRNVFVGTYN 599
Query: 561 VGQGRASQDALISWL---GSAASDVGIVVVGLQEV-EMGAGFLAMSAAKETVGLEGSAVG 616
VG +S L+ WL G+ V+GLQEV E+ AG + + S++G
Sbjct: 600 VGGVHSSYFDLVQWLRPDGANCPTPDFYVLGLQEVVELTAGQILAT---------DSSIG 650
Query: 617 HWWLDMIGKILDDGST---FERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRA 673
W D I + L S + ++ S QL GLL+A++VR++ Y +V + V CG
Sbjct: 651 KQWEDAIERALPKVSPNVKYIKLQSSQLVGLLMAIYVREDAIHYFREVQIQNVKCGMNGL 710
Query: 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCR 723
GNKG +G+R+ D FV HFAA V R +DF + T+ F R
Sbjct: 711 AGNKGGIGVRLLFSDTSFTFVTAHFAAGQSNVEDRISDFREIDSTLAFGR 760
|
|
| MGI|MGI:103257 Inpp5b "inositol polyphosphate-5-phosphatase B" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 234 (87.4 bits), Expect = 3.6e-25, Sum P(2) = 3.6e-25
Identities = 54/193 (27%), Positives = 96/193 (49%)
Query: 529 GPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVG 588
G D+I+ L KE YT ++N + GT+NV G++ ++ L WL +A + VG
Sbjct: 322 GLRDTIVRSHLVQKEENYTYIQNFRFFVGTYNVN-GQSPKECLRPWLSHSALAPDVYCVG 380
Query: 589 LQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAV 648
QE+++ +KE + W + + L + + +V +L G+++ +
Sbjct: 381 FQELDL---------SKEAFFFHDTPKEEEWFKAVSESLHPDAKYAKVKFVRLVGIMLLL 431
Query: 649 WVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRR 708
+V++ Y+ +V+ V G +GNKG V +R ++++ +C VN H AAH E RR
Sbjct: 432 YVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQLHNTSICVVNSHLAAHTEEYERR 491
Query: 709 NADFDHVYRTMTF 721
N D+ + M F
Sbjct: 492 NQDYRDICSRMQF 504
|
|
| TAIR|locus:2141095 IP5PII "AT4G18010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 172 (65.6 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 38/91 (41%), Positives = 54/91 (59%)
Query: 738 VVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRE 797
V +++R T S L + + D V + GD NYRL+ ++ E R +SQ+ +D L+
Sbjct: 470 VYEIIRRTRFASVLDTDQPRTIPCHDQVFWFGDLNYRLN-MSDGEVRKLVSQKRWDELKN 528
Query: 798 RDQLRAEMEAGNVFQGMREADIKFPPTYKFE 828
DQL E+ G+VF G RE IKFPPTYK+E
Sbjct: 529 SDQLIRELRRGHVFDGWREGPIKFPPTYKYE 559
|
|
| ZFIN|ZDB-GENE-061110-61 ocrl "oculocerebrorenal syndrome of Lowe" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 252 (93.8 bits), Expect = 2.8e-24, Sum P(3) = 2.8e-24
Identities = 57/194 (29%), Positives = 99/194 (51%)
Query: 529 GPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVG 588
G + +L L+ KE Y ++N K GTWNV G++ +L WL S + +G
Sbjct: 278 GSREGLLKYRLSKKEKEYVDIKNFKFFVGTWNVN-GQSPDSSLGPWLSSDPDPPDVYALG 336
Query: 589 LQEVEMGA-GFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIA 647
QE+++ F M ++KE + W+D + + L + + +V +L G+++
Sbjct: 337 FQELDLSTEAFFYMDSSKEQL----------WVDAVERGLHQKARYIQVRIIRLVGMMLV 386
Query: 648 VWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNR 707
V+++K KD + ++ +V G +GNKG V +R ++ CFVN H AAH++ R
Sbjct: 387 VYIKKEHKDQIREIASESVGTGLMNKMGNKGGVAVRFVFHNTSFCFVNSHLAAHVDDFER 446
Query: 708 RNADFDHVYRTMTF 721
RN D+ + M+F
Sbjct: 447 RNQDYKDICARMSF 460
|
|
| DICTYBASE|DDB_G0284187 Dd5P2 "inositol 5-phosphatase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 62/177 (35%), Positives = 95/177 (53%)
Query: 550 ENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQE-VEMGAGFLAMSAAKETV 608
++L I GTWN R L +W+ + + I+V+GLQE V M AG + + A +
Sbjct: 443 KHLSIFVGTWNCNAKRTQN--LANWILTNSFAPDIIVLGLQEIVNMKAGAIVKATAADKQ 500
Query: 609 GLEGSAVGHWWLDMIGKI-LDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVP 667
+ +A W D+ + L G + +V ++ L GL+I V+V++ Y+ +V A VP
Sbjct: 501 NNKENAYHPWKHDIEQTLSLSSGGRYVKVMNKVLVGLMILVYVKEEHAPYISEVSGAVVP 560
Query: 668 CGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAA---HLEAVNRRNADFDHVYRTMTF 721
CG IGNKG +G+R +Y +CFVN H AA H E + RR D+ + + MTF
Sbjct: 561 CGMMGKIGNKGGLGVRFTLYKTGICFVNSHLAAGPSH-EKMERRTQDYKKI-QMMTF 615
|
|
| TAIR|locus:2077314 AT3G63240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 172 (65.6 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 43/104 (41%), Positives = 62/104 (59%)
Query: 738 VVQMLRSTN-P-LSGLTVEGVPEL-SEADMVIFLGDFNYRLDGITYDEARDFISQRCFDW 794
V+++LR T P ++ + P++ SE D VI+LGD NYR+ ++Y A+ + R DW
Sbjct: 359 VLEILRKTRFPRVNNAGDDKSPQMISEHDRVIWLGDLNYRI-ALSYRSAKALVEMR--DW 415
Query: 795 --LRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAG 836
L E+DQLR E G VF+G +E I FPPTYK+ + AG
Sbjct: 416 RALLEKDQLRIEQRKGCVFEGWKEGTIYFPPTYKYSNNSDIYAG 459
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q84W55 | IP5P4_ARATH | 3, ., 1, ., 3, ., 3, 6 | 0.6863 | 0.9415 | 0.7166 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.1.3 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 838 | |||
| cd09074 | 299 | cd09074, INPP5c, Catalytic domain of inositol poly | 8e-79 | |
| smart00128 | 306 | smart00128, IPPc, Inositol polyphosphate phosphata | 1e-63 | |
| cd09093 | 292 | cd09093, INPP5c_INPP5B, Catalytic inositol polypho | 1e-54 | |
| cd09090 | 291 | cd09090, INPP5c_ScInp51p-like, Catalytic inositol | 3e-46 | |
| cd09094 | 300 | cd09094, INPP5c_INPP5J-like, Catalytic inositol po | 2e-39 | |
| cd09089 | 328 | cd09089, INPP5c_Synj, Catalytic inositol polyphosp | 4e-35 | |
| COG5411 | 460 | COG5411, COG5411, Phosphatidylinositol 5-phosphate | 2e-33 | |
| cd09098 | 336 | cd09098, INPP5c_Synj1, Catalytic inositol polyphos | 2e-28 | |
| cd09099 | 336 | cd09099, INPP5c_Synj2, Catalytic inositol polyphos | 6e-26 | |
| PLN03191 | 621 | PLN03191, PLN03191, Type I inositol-1,4,5-trisphos | 2e-25 | |
| cd09101 | 304 | cd09101, INPP5c_SHIP2-INPPL1, Catalytic inositol p | 3e-20 | |
| cd09095 | 298 | cd09095, INPP5c_INPP5E-like, Catalytic inositol po | 2e-16 | |
| cd09091 | 307 | cd09091, INPP5c_SHIP, Catalytic inositol polyphosp | 3e-16 | |
| cd09100 | 307 | cd09100, INPP5c_SHIP1-INPP5D, Catalytic inositol p | 1e-13 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.003 |
| >gnl|CDD|197308 cd09074, INPP5c, Catalytic domain of inositol polyphosphate 5-phosphatases | Back alignment and domain information |
|---|
Score = 256 bits (655), Expect = 8e-79
Identities = 96/281 (34%), Positives = 133/281 (47%), Gaps = 40/281 (14%)
Query: 552 LKILAGTWNVGQGRASQDALISWLGSA-ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGL 610
+KI TWNVG G + + L +WL I VG+QEV+M VG
Sbjct: 1 VKIFVVTWNVGGGISPPENLENWLSPKGTEAPDIYAVGVQEVDMSVQGF--------VGN 52
Query: 611 EGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGF 670
+ SA W+D I + L++ + +GS QL G+ + V+V+K + D++V V G
Sbjct: 53 DDSAKAREWVDNIQEALNEKENYVLLGSAQLVGIFLFVFVKKEHLPQIKDLEVEGVTVGT 112
Query: 671 GRA--IGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLC 728
G +GNKG V +R ++ D CFVN H AA E V RRN D+ + + F R
Sbjct: 113 GGGGKLGNKGGVAIRFQINDTSFCFVNSHLAAGQEEVERRNQDYRDILSKLKFYRGDPAI 172
Query: 729 SAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFIS 788
+ + D+V + GD NYR+D T DE R IS
Sbjct: 173 D----------------------------SIFDHDVVFWFGDLNYRIDS-TDDEVRKLIS 203
Query: 789 QRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEK 829
Q D L E+DQL+ + E G VF G +E I FPPTYKF+
Sbjct: 204 QGDLDDLLEKDQLKKQKEKGKVFDGFQELPITFPPTYKFDP 244
|
Inositol polyphosphate 5-phosphatases (5-phosphatases) are signal-modifying enzymes, which hydrolyze the 5-phosphate from the inositol ring of specific 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs), such as PI(4,5)P2, PI(3,4,5)P3, PI(3,5)P2, I(1,4,5)P3, and I(1,3,4,5)P4. These enzymes are Mg2+-dependent, and belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. In addition to this INPP5c domain, 5-phosphatases often contain additional domains and motifs, such as the SH2 domain, the Sac-1 domain, the proline-rich domain (PRD), CAAX, RhoGAP (RhoGTPase-activating protein), and SKICH [SKIP (skeletal muscle- and kidney-enriched inositol phosphatase) carboxyl homology] domains, that are important for protein-protein interactions and/or for the subcellular localization of these enzymes. 5-phosphatases incorporate into large signaling complexes, and regulate diverse cellular processes including postsynaptic vesicular trafficking, insulin signaling, cell growth and survival, and endocytosis. Loss or gain of function of 5-phosphatases is implicated in certain human diseases. This family also contains a functionally unrelated nitric oxide transport protein, Cimex lectularius (bedbug) nitrophorin, which catalyzes a heme-assisted S-nitrosation of a proximal thiolate; the heme however binds at a site distinct from the active site of the 5-phosphatases. Length = 299 |
| >gnl|CDD|214525 smart00128, IPPc, Inositol polyphosphate phosphatase, catalytic domain homologues | Back alignment and domain information |
|---|
Score = 216 bits (551), Expect = 1e-63
Identities = 95/286 (33%), Positives = 135/286 (47%), Gaps = 49/286 (17%)
Query: 551 NLKILAGTWNVGQGRASQDALISWLGSAASDVG-----IVVVGLQEVEMGAGFLAMSAAK 605
++K+L GTWNVG + + + SWL I V+GLQEV A
Sbjct: 2 DIKVLIGTWNVGGLESPKVDVTSWLFQKIEVKQSEKPDIYVIGLQEVVGLAPG------- 54
Query: 606 ETVGLEGSAVGH-WWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVA 664
V LE A W D++ L+ + + L G+L+ V+V+ N Y+ DV+
Sbjct: 55 --VILETIAGKERLWSDLLESSLNGDGQYNVLAKVYLVGILVLVFVKANHLVYIKDVETF 112
Query: 665 AVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRP 724
V G G GNKGAV +R ++ D CFVN H AA V +RN D+ + R ++F
Sbjct: 113 TVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGASNVEQRNQDYKTILRALSF--- 169
Query: 725 SNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSE--ADMVIFLGDFNYRLDGITYDE 782
LS+ D+V + GD N+RLD +Y+E
Sbjct: 170 -----------------------------PERALLSQFDHDVVFWFGDLNFRLDSPSYEE 200
Query: 783 ARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE 828
R IS++ FD L E+DQL + EAG VF+G +E I FPPTYK++
Sbjct: 201 VRRKISKKEFDDLLEKDQLNRQREAGKVFKGFQEGPITFPPTYKYD 246
|
Mg(2+)-dependent/Li(+)-sensitive enzymes. Length = 306 |
| >gnl|CDD|197327 cd09093, INPP5c_INPP5B, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Type II inositol polyphosphate 5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and related proteins | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 1e-54
Identities = 83/278 (29%), Positives = 133/278 (47%), Gaps = 42/278 (15%)
Query: 552 LKILAGTWNV-GQGRASQDALISWLGSAASDVGIVVVGLQEVEMGA-GFLAMSAAKETVG 609
+I GTWNV GQ +L WL I +G QE+++ A FL +++E
Sbjct: 1 FRIFVGTWNVNGQSPDE--SLRPWLSCDEEPPDIYAIGFQELDLSAEAFLFNDSSREQE- 57
Query: 610 LEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCG 669
W+ + + L + +++V +L G+++ V+V+K + ++ +V V G
Sbjct: 58 ---------WVKAVERGLHPDAKYKKVKLIRLVGMMLLVFVKKEHRQHIKEVAAETVGTG 108
Query: 670 FGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCS 729
+GNKG V +R + ++ CFVN H AAH+E V RRN D+ + M F P
Sbjct: 109 IMGKMGNKGGVAVRFQFHNTTFCFVNSHLAAHMEEVERRNQDYKDICARMKFEDPDG--- 165
Query: 730 AAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQ 789
PLS +S+ D+V +LGD NYR+ + +E ++ I +
Sbjct: 166 ----------------PPLS---------ISDHDVVFWLGDLNYRIQELPTEEVKELIEK 200
Query: 790 RCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKF 827
+ L + DQL + AG VF+G E +I F PTYK+
Sbjct: 201 NDLEELLKYDQLNIQRRAGKVFEGFTEGEINFIPTYKY 238
|
This subfamily contains the INPP5c domain of type II inositol polyphosphate 5-phosphatase I (INPP5B), Oculocerebrorenal syndrome of Lowe 1 (OCRL-1), and related proteins. It belongs to a family of Mg2+-dependent inositol polyphosphate 5-phosphatases, which hydrolyze the 5-phosphate from the inositol ring of various 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs), and to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. INPP5B and OCRL1 preferentially hydrolyze the 5-phosphate of phosphatidylinositol (4,5)- bisphosphate [PI(4,5)P2] and phosphatidylinositol (3,4,5)- trisphosphate [PI(3,4,5)P3]. INPP5B can also hydrolyze soluble inositol (1,4,5)-trisphosphate [I(1,4,5)P3] and inositol (1,3,4,5)-tetrakisphosphate [I(1,3,4,5)P4]. INPP5B participates in the endocytic pathway and in the early secretory pathway. In the latter, it may function in retrograde ERGIC (ER-to-Golgi intermediate compartment)-to-ER transport; it binds specific RAB proteins within the secretory pathway. In the endocytic pathway, it binds RAB5 and during endocytosis, may function in a RAB5-controlled cascade for converting PI(3,4,5)P3 to phosphatidylinositol 3-phosphate (PI3P). This cascade may link growth factor signaling and membrane dynamics. Mutation in OCRL1 is implicated in Lowe syndrome, an X-linked recessive multisystem disorder, which includes defects in eye, brain, and kidney function, and in Type 2 Dent's disease, a disorder with only the renal symptoms. OCRL-1 may have a role in membrane trafficking within the endocytic pathway and at the trans-Golgi network, and may participate in actin dynamics or signaling from endomembranes. OCRL1 and INPP5B have overlapping functions: deletion of both 5-phosphatases in mice is embryonic lethal, deletion of OCRL1 alone has no phenotype, and deletion of Inpp5b alone has only a mild phenotype (male sterility). Several of the proteins that interact with OCRL1 also bind INPP5B, for examples, inositol polyphosphate phosphatase interacting protein of 27kDa (IPIP27)A and B (also known as Ses1 and 2), and endocytic signaling adaptor APPL1. OCRL1, but not INPP5B, binds clathrin heavy chain, the plasma membrane AP2 adaptor subunit alpha-adaptin. In addition to this INPP5c domain, most proteins in this subfamily have a C-terminal RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain. Length = 292 |
| >gnl|CDD|197324 cd09090, INPP5c_ScInp51p-like, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Saccharomyces cerevisiae Inp51p, Inp52p, and Inp53p, and related proteins | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 3e-46
Identities = 95/285 (33%), Positives = 131/285 (45%), Gaps = 52/285 (18%)
Query: 552 LKILAGTWNVGQGRASQDALISWL----GSAASDVGIVVVGLQE-VEMGAGFLAMSAAKE 606
+ I GT+NV G++ +D L SWL D IVV+GLQE VE+ AG + S
Sbjct: 1 INIFVGTFNVN-GKSYKDDLSSWLFPEENDELPD--IVVIGLQEVVELTAGQILNSD--- 54
Query: 607 TVGLEGSAVGHWWLDMIGKILD--DGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVA 664
+ +W I L+ G + + S QL G + +V+++ V +V+ +
Sbjct: 55 ------PSKSSFWEKKIKTTLNGRGGEKYVLLRSEQLVGTALLFFVKESQLPKVKNVEGS 108
Query: 665 AVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRP 724
G G GNKGAV +R D CFV H AA L RN D+ + R + F R
Sbjct: 109 TKKTGLGGMSGNKGAVAIRFDYGDTSFCFVTSHLAAGLTNYEERNNDYKTIARGLRFSR- 167
Query: 725 SNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEAR 784
G T++ + D VI+LGDFNYR+ +T ++ R
Sbjct: 168 -------------------------GRTIK------DHDHVIWLGDFNYRIS-LTNEDVR 195
Query: 785 DFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEK 829
FI D L E DQL +M AG VF G E I FPPTYK++K
Sbjct: 196 RFILNGKLDKLLEYDQLNQQMNAGEVFPGFSEGPITFPPTYKYDK 240
|
This subfamily contains the INPP5c domain of three Saccharomyces cerevisiae synaptojanin-like inositol polyphosphate 5-phosphatases (INP51, INP52, and INP53), Schizosaccharomyces pombe synaptojanin (SPsynaptojanin), and related proteins. It belongs to a family of Mg2+-dependent inositol polyphosphate 5-phosphatases, which hydrolyze the 5-phosphate from the inositol ring of various 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs), and to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. In addition to this INPP5c domain, these proteins have an N-terminal catalytic Sac1-like domain (found in other proteins including the phophoinositide phosphatase Sac1p), and a C-terminal proline-rich domain (PRD). The Sac1 domain allows Inp52p and Inp53p to recognize and dephosphorylate a wider range of substrates including PI3P, PI4P, and PI(3,5)P2. The Sac1 domain of Inp51p is non-functional. Disruption of any two of INP51, INP52, and INP53, in S. cerevisiae leads to abnormal vacuolar and plasma membrane morphology. During hyperosmotic stress, Inp52p and Inp53p localize at actin patches, where they may facilitate the hydrolysis of PI(4,5)P2, and consequently promote actin rearrangement to regulate cell growth. SPsynaptojanin is also active against a range of soluble and lipid inositol phosphates, including I(1,4,5)P3, I(1,3,4,5)P4, I(1,4,5,6)P4, PI(4,5)P2, and PIP3. Transformation of S. cerevisiae with a plasmid expressing the SPsynaptojanin 5-phosphatase domain rescues inp51/inp52/inp53 triple-mutant strains. Length = 291 |
| >gnl|CDD|197328 cd09094, INPP5c_INPP5J-like, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of inositol polyphosphate 5-phosphatase J and related proteins | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 2e-39
Identities = 76/283 (26%), Positives = 117/283 (41%), Gaps = 48/283 (16%)
Query: 552 LKILAGTWNVGQGRASQDALISWLG--SAASDVGIVVVGLQEVEMGAGFLAMSAAKETVG 609
L++ TWNV + S LG S I ++GLQEV +
Sbjct: 1 LRVYVVTWNVAT-APPPIDVRSLLGLQSPEVAPDIYIIGLQEVNSKPVQFVSDLIFDDP- 58
Query: 610 LEGSAVGHWWLDMIGKILDDGSTFE--RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVP 667
W D+ IL S +V S +L GLL+ V+V+ ++ DV
Sbjct: 59 ---------WSDLFMDIL---SPKGYVKVSSIRLQGLLLLVFVKIQHLPFIRDVQTNYTR 106
Query: 668 CGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNL 727
G G GNKGAV +R +Y ++CF+NCH AH+E +R DF+ + T F
Sbjct: 107 TGLGGYWGNKGAVTVRFSLYGHMICFLNCHLPAHMEKWEQRIDDFETILSTQVF------ 160
Query: 728 CSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFI 787
P + + D V + GD N+R++ ++ + R+ +
Sbjct: 161 ------------------------NECNTPSILDHDYVFWFGDLNFRIEDVSIEFVRELV 196
Query: 788 SQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKH 830
+ + + L E+DQL FQG +E + F PTYKF+
Sbjct: 197 NSKKYHLLLEKDQLNMAKRKEEAFQGFQEGPLNFAPTYKFDLG 239
|
INPP5c domain of Inositol polyphosphate-5-phosphatase J (INPP5J), also known as PIB5PA or PIPP, and related proteins. This subfamily belongs to a family of Mg2+-dependent inositol polyphosphate 5-phosphatases, which hydrolyze the 5-phosphate from the inositol ring of various 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs), and to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. INPP5J hydrolyzes PI(4,5)P2, I(1,4,5)P3, and I(1,3,4,5)P4 at ruffling membranes. These proteins contain a C-terminal, SKIP carboxyl homology domain (SKICH), which may direct plasma membrane ruffle localization. Length = 300 |
| >gnl|CDD|197323 cd09089, INPP5c_Synj, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanins | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 4e-35
Identities = 84/298 (28%), Positives = 127/298 (42%), Gaps = 63/298 (21%)
Query: 552 LKILAGTWNVGQGR------------------ASQDALISWLGSAASD--VGIVVVGLQE 591
L++ GTWNV G+ + A S + V I +G +E
Sbjct: 1 LRVFVGTWNVNGGKHFRSIAFKHQSMTDWLLDNPKLAGQCSNDSEEDEKPVDIFAIGFEE 60
Query: 592 -VEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWV 650
V++ A + ++ + W + + K + + + S QL G+ + V+V
Sbjct: 61 MVDLNASNIVSAS---------TTNQKEWGEELQKTISRDHKYVLLTSEQLVGVCLFVFV 111
Query: 651 RKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNA 710
R ++ DV V V G G A GNKGAV +R ++ +CFV HFAA V RN
Sbjct: 112 RPQHAPFIRDVAVDTVKTGLGGAAGNKGAVAIRFLLHSTSLCFVCSHFAAGQSQVKERNE 171
Query: 711 DFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGD 770
DF + R ++F M R+ L D V + GD
Sbjct: 172 DFAEIARKLSF------------------PMGRT--------------LDSHDYVFWCGD 199
Query: 771 FNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE 828
FNYR+D + DE ++ + + L E DQL + AGNVF+G E +I F PTYK++
Sbjct: 200 FNYRID-LPNDEVKELVRNGDWLKLLEFDQLTKQKAAGNVFKGFLEGEINFAPTYKYD 256
|
This subfamily contains the INPP5c domains of two human synaptojanins, synaptojanin 1 (Synj1) and synaptojanin 2 (Synj2), and related proteins. It belongs to a family of Mg2+-dependent inositol polyphosphate 5-phosphatases, which hydrolyze the 5-phosphate from the inositol ring of various 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs). They belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. Synj1 occurs as two main isoforms: a brain enriched 145 KDa protein (Synj1-145) and a ubiquitously expressed 170KDa protein (Synj1-170). Synj1-145 participates in clathrin-mediated endocytosis. The primary substrate of the Synj1-145 INPP5c domain is PI(4,5)P2, which it converts to PI4P. Synj1-145 may work with membrane curvature sensors/generators (such as endophilin) to remove PI(4,5)P2 from curved membranes. The recruitment of the INPP5c domain of Synj1-145 to endophilin-induced membranes leads to a fragmentation and condensation of these structures. The PI(4,5)P2 to PI4P conversion may cooperate with dynamin to produce membrane fission. In addition to this INPP5c domain, Synjs contain an N-terminal Sac1-like domain; the Sac1 domain can dephosphorylate a variety of phosphoinositides in vitro. Synj2 can hydrolyze phosphatidylinositol diphosphate (PIP2) to phosphatidylinositol phosphate (PIP). Synj2 occurs as multiple alternative splice variants in various tissues. These variants share the INPP5c domain and the Sac1 domain. Synj2A is recruited to the mitochondria via its interaction with OMP25 (a mitochondrial outer membrane protein). Synj2B is found at nerve terminals in the brain and at the spermatid manchette in testis. Synj2B undergoes further alternative splicing to give 2B1 and 2B2. In clathrin-mediated endocytosis, Synj2 participates in the formation of clathrin-coated pits, and perhaps also in vesicle decoating. Rac1 GTPase regulates the intracellular localization of Synj2 forms, but not Synj1. Synj2 may contribute to the role of Rac1 in cell migration and invasion, and is a potential target for therapeutic intervention in malignant tumors. Length = 328 |
| >gnl|CDD|227698 COG5411, COG5411, Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 2e-33
Identities = 84/308 (27%), Positives = 120/308 (38%), Gaps = 49/308 (15%)
Query: 528 PGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWL---GSAASDVGI 584
P + L + Y +++ I T+N G+ + + WL A +
Sbjct: 6 YDPRHPYIVAVLRQRRSKYVIEKDVSIFVSTFNP-PGKPPKASTKRWLFPEIEATELADL 64
Query: 585 VVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERV---GSRQL 641
VVGLQEV + ++ + + W + L+ + E+ S QL
Sbjct: 65 YVVGLQEV------VELTPGSI-LSADPYDRLRIWESKVLDCLNGAQSDEKYSLLRSPQL 117
Query: 642 AGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAH 701
G+L+ V+ V V GFG + NKGAV +R CFVN H AA
Sbjct: 118 GGILLRVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGAVAIRFNYERTSFCFVNSHLAAG 177
Query: 702 LEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSE 761
+ + R D+ + + F R GL +
Sbjct: 178 VNNIEERIFDYRSIASNICFSR--------------------------GLRIYDH----- 206
Query: 762 ADMVIFLGDFNYRLDGITYDEARDFISQ--RCFDWLRERDQLRAEMEAGNVFQGMREADI 819
D + +LGD NYR+ T +E R I+ D L E DQL EME GNVF G +E I
Sbjct: 207 -DTIFWLGDLNYRVTS-TNEEVRPEIASDDGRLDKLFEYDQLLWEMEVGNVFPGFKEPVI 264
Query: 820 KFPPTYKF 827
FPPTYKF
Sbjct: 265 TFPPTYKF 272
|
Length = 460 |
| >gnl|CDD|197332 cd09098, INPP5c_Synj1, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1 | Back alignment and domain information |
|---|
Score = 117 bits (293), Expect = 2e-28
Identities = 88/297 (29%), Positives = 129/297 (43%), Gaps = 62/297 (20%)
Query: 552 LKILAGTWNVGQGRA------SQDALISWLGSAASDVG-------------IVVVGLQE- 591
+++ GTWNV G+ L WL A G I +G +E
Sbjct: 1 IRVCVGTWNVNGGKQFRSIAFKNQTLTDWLLDAPKKAGIPEFQDVRSKPVDIFAIGFEEM 60
Query: 592 VEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVR 651
VE+ AG + +SA+ L W + K + + + S QL G+ + V++R
Sbjct: 61 VELNAGNI-VSASTTNQKL--------WAAELQKTISRDQKYVLLASEQLVGVCLFVFIR 111
Query: 652 KNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNAD 711
++ DV V V G G A GNKGAV +R+ + +CFV HFAA V RN D
Sbjct: 112 PQHAPFIRDVAVDTVKTGMGGATGNKGAVAIRMLFHTTSLCFVCSHFAAGQSQVKERNED 171
Query: 712 FDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDF 771
F + R ++F P+ + L D V + GDF
Sbjct: 172 FIEIARKLSF-------------------------PMGRM-------LFSHDYVFWCGDF 199
Query: 772 NYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE 828
NYR+D I +E ++ I Q+ +D L DQL + AG VF+G E + F PTYK++
Sbjct: 200 NYRID-IPNEEVKELIRQQNWDSLIAGDQLINQKNAGQVFRGFLEGKLDFAPTYKYD 255
|
This subfamily contains the INPP5c domains of human synaptojanin 1 (Synj1) and related proteins. It belongs to a family of Mg2+-dependent inositol polyphosphate 5-phosphatases, which hydrolyze the 5-phosphate from the inositol ring of various 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs), and to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. Synj1 occurs as two main isoforms: a brain enriched 145 KDa protein (Synj1-145) and a ubiquitously expressed 170KDa protein (Synj1-170). Synj1-145 participates in clathrin-mediated endocytosis. The primary substrate of the Synj1-145 INPP5c domain is PI(4,5)P2, which it converts to PI4P. Synj1-145 may work with membrane curvature sensors/generators (such as endophilin) to remove PI(4,5)P2 from curved membranes. The recruitment of the INPP5c domain of Synj1-145 to endophilin-induced membranes leads to a fragmentation and condensation of these structures. The PI(4,5)P2 to PI4P conversion may cooperate with dynamin to produce membrane fission. In addition to this INPP5c domain, these proteins contain an N-terminal Sac1-like domain; the Sac1 domain can dephosphorylate a variety of phosphoinositides in vitro. Length = 336 |
| >gnl|CDD|197333 cd09099, INPP5c_Synj2, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2 | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 6e-26
Identities = 77/297 (25%), Positives = 124/297 (41%), Gaps = 62/297 (20%)
Query: 552 LKILAGTWNVGQGRASQDALIS------WLGSAASDVG-------------IVVVGLQE- 591
++ GTWNV G+ + ++ WL + G I VG +E
Sbjct: 1 TRVAMGTWNVNGGKQFRSNILGTSELTDWLLDSPKLSGTPDFQDDESNPPDIFAVGFEEM 60
Query: 592 VEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVR 651
VE+ AG + ++ W + + K + + + S QL G+ + ++VR
Sbjct: 61 VELSAGNIVNASTTNR---------KMWGEQLQKAISRSHRYILLTSAQLVGVCLFIFVR 111
Query: 652 KNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNAD 711
++ DV + V G G GNKGAV +R + Y CF+ H A V RN D
Sbjct: 112 PYHVPFIRDVAIDTVKTGMGGKAGNKGAVAIRFQFYSTSFCFICSHLTAGQNQVKERNED 171
Query: 712 FDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDF 771
+ + + ++F N+ S D V + GDF
Sbjct: 172 YKEITQKLSFPMGRNVFS--------------------------------HDYVFWCGDF 199
Query: 772 NYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE 828
NYR+D +TY+E FI ++ + L E DQL+ + +G +F+ E I F PTYK++
Sbjct: 200 NYRID-LTYEEVFYFIKRQDWKKLLEFDQLQLQKSSGKIFKDFHEGTINFGPTYKYD 255
|
This subfamily contains the INPP5c domains of human synaptojanin 2 (Synj2) and related proteins. It belongs to a family of Mg2+-dependent inositol polyphosphate 5-phosphatases, which hydrolyze the 5-phosphate from the inositol ring of various 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs), and to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. Synj2 can hydrolyze phosphatidylinositol diphosphate (PIP2) to phosphatidylinositol phosphate (PIP). In addition to this INPP5c domain, these proteins contain an N-terminal Sac1-like domain; the Sac1 domain can dephosphorylate a variety of phosphoinositides in vitro. Synj2 occurs as multiple alternative splice variants in various tissues. These variants share the INPP5c domain and the Sac1 domain. Synj2A is recruited to the mitochondria via its interaction with OMP25, a mitochondrial outer membrane protein. Synj2B is found at nerve terminals in the brain and at the spermatid manchette in testis. Synj2B undergoes further alternative splicing to give 2B1 and 2B2. In clathrin-mediated endocytosis, Synj2 participates in the formation of clathrin-coated pits, and perhaps also in vesicle decoating. Rac1 GTPase regulates the intracellular localization of Synj2 forms, but not Synj1. Synj2 may contribute to the role of Rac1 in cell migration and invasion, and is a potential target for therapeutic intervention in malignant tumors. Length = 336 |
| >gnl|CDD|215624 PLN03191, PLN03191, Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-25
Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 29/196 (14%)
Query: 635 RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFV 694
R+ S+Q+ G+ ++VWVRK L+ ++ ++ V+ V G +GNKG+V + + ++ +CFV
Sbjct: 366 RIVSKQMVGIYVSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFV 425
Query: 695 NCHFAAHLE--AVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLT 752
H + + A RRNAD V +++R T S L
Sbjct: 426 CSHLTSGHKDGAEQRRNAD--------------------------VYEIIRRTRFSSVLD 459
Query: 753 VEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQ 812
+ + D + + GD NYRL+ + E R ++Q+ +D L DQL E+ +G+VF
Sbjct: 460 TDQPQTIPSHDQIFWFGDLNYRLN-MLDTEVRKLVAQKRWDELINSDQLIKELRSGHVFD 518
Query: 813 GMREADIKFPPTYKFE 828
G +E IKFPPTYK+E
Sbjct: 519 GWKEGPIKFPPTYKYE 534
|
Length = 621 |
| >gnl|CDD|197335 cd09101, INPP5c_SHIP2-INPPL1, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of SH2 domain containing inositol 5-phosphatase-2 and related proteins | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 3e-20
Identities = 76/291 (26%), Positives = 121/291 (41%), Gaps = 62/291 (21%)
Query: 552 LKILAGTWNVGQGRASQDALISW-----LGSAASDVG------IVVVGLQEVEMGAGFLA 600
+ I GTWN+G + L SW LG + I V G QE +G
Sbjct: 1 ISIFIGTWNMGSVPPPKS-LASWLTSRGLGKTLDETTVTIPHDIYVFGTQENSVGD---- 55
Query: 601 MSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFER--VGSRQLAGLLIAVWVRKNLKDYV 658
+E W+D + L + + + + + L + + V V+ ++ +
Sbjct: 56 ----RE------------WVDFLRASLKELTDIDYQPIALQCLWNIKMVVLVKPEHENRI 99
Query: 659 GDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718
V ++V G +GNKGAVG+ FVNCH + E +RRN ++ + R+
Sbjct: 100 SHVHTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTHRRNQNYLDILRS 159
Query: 719 MTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGI 778
+ S ++ LR T+ + + GD NYRLD +
Sbjct: 160 L---------SLGDKQLNAFDISLRFTH------------------LFWFGDLNYRLD-M 191
Query: 779 TYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEK 829
E ++I+++ FD L DQL E E VF RE +I FPPTY++E+
Sbjct: 192 DIQEILNYITRKEFDPLLAVDQLNLEREKNKVFLRFREEEISFPPTYRYER 242
|
This subfamily contains the INPP5c domain of SHIP2 (SH2 domain containing inositol 5-phosphatase-2, also called INPPL1) and related proteins. It belongs to a family of Mg2+-dependent inositol polyphosphate 5-phosphatases, which hydrolyze the 5-phosphate from the inositol ring of various 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs), and to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. SHIP2 catalyzes the dephosphorylation of the PI, phosphatidylinositol 3,4,5-trisphosphate [PI(3,4,5)P3], to phosphatidylinositol 3,4-bisphosphate [PI(3,4)P2]. SHIP2 is widely expressed, most prominently in brain, heart and in skeletal muscle. SHIP2 is an inhibitor of the insulin signaling pathway. It is implicated in actin structure remodeling, cell adhesion and cell spreading, receptor endocytosis and degradation, and in the JIP1-mediated JNK pathway. Its interacting partners include filamin/actin, p130Cas, Shc, Vinexin, Interesectin 1, and c-Jun NH2-terminal kinase (JNK)-interacting protein 1 (JIP1). A large variety of extracellular stimuli appear to lead to the tyrosine phosphorylation of SHIP2, including epidermal growth factor (EGF), platelet-derived growth factor (PDGF), insulin, macrophage colony-stimulating factor (M-CSF) and hepatocyte growth factor (HGF). SHIP2 is localized to the cytosol in quiescent cells; following growth factor stimulation and /or cell adhesion, it relocalizes to membrane ruffles. In addition to this INPP5c domain, SHIP2 has an N-terminal SH2 domain, a C-terminal proline-rich domain (PRD), which includes a WW-domain binding motif (PPLP), an NPXY motif and a sterile alpha motif (SAM) domain. The gene encoding SHIP2 is a candidate for conferring a predisposition for type 2 diabetes; it has been suggested that suppression of SHIP2 may be of benefit in the treatment of obesity and thereby prevent type 2 diabetes. SHIP2 and SHIP1 have little overlap in their in vivo functions. Length = 304 |
| >gnl|CDD|197329 cd09095, INPP5c_INPP5E-like, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Inositol polyphosphate-5-phosphatase E and related proteins | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 2e-16
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 25/188 (13%)
Query: 644 LLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703
L +AV++R++L + +V+ A V I KGA+ + + F+ HF +
Sbjct: 77 LHLAVFIRRDLIWFCSEVESATVTTRIVSQIKTKGALAISFTFFGTSFLFITSHFTSGDG 136
Query: 704 AVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEAD 763
V R D++ + + + P N+ + + S + + D
Sbjct: 137 KVKERVLDYNKIIQALNL--PRNVPT------NPYKS--ESGDVTTRF-----------D 175
Query: 764 MVIFLGDFNYRLDGITYDEARDFISQRCFDWLRE---RDQLRAEMEAGNVFQGMREADIK 820
V + GDFN+RL G I+Q + DQL EM G++F+G +EA I
Sbjct: 176 EVFWFGDFNFRLSG-PRHLVDALINQGQEVDVSALLQHDQLTREMSKGSIFKGFQEAPIH 234
Query: 821 FPPTYKFE 828
FPPTYKF+
Sbjct: 235 FPPTYKFD 242
|
INPP5c domain of Inositol polyphosphate-5-phosphatase E (also called type IV or 72 kDa 5-phosphatase), rat pharbin, and related proteins. This subfamily belongs to a family of Mg2+-dependent inositol polyphosphate 5-phosphatases, which hydrolyze the 5-phosphate from the inositol ring of various 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs), and to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. INPP5E hydrolyzes the 5-phosphate from PI(3,5)P2, PI(4,5)P2 and PI(3,4,5)P3, forming PI3P, PI4P, and PI(3,4)P2, respectively. It is a very potent PI(3,4,5)P3 5-phosphatase. Its intracellular localization is chiefly cytosolic, with pronounced perinuclear/Golgi localization. INPP5E also has an N-terminal proline rich domain (PRD) and a C-terminal CAAX motif. This protein is expressed in a variety of tissues, including the breast, brain, testis, and haemopoietic cells. It is differentially expressed in several cancers, for example, it is up-regulated in cervical cancer and down-regulated in stomach cancer. It is a candidate target for therapeutics of obesity and related disorders, as it is expressed in the hypothalamus, and following insulin stimulation, it undergoes tyrosine phosphorylation, associates with insulin receptor substrate-1, -2, and PI3-kinase, and become active as a 5-phosphatase. INPP5E may play a role, along with other 5-phosphatases SHIP2 and SKIP, in regulating glucose homoeostasis and energy metabolism. Mice deficient in INPPE5 develop a multi-organ disorder associated with structural defects of the primary cilium. Length = 298 |
| >gnl|CDD|197325 cd09091, INPP5c_SHIP, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of SH2 domain containing inositol polyphosphate 5-phosphatase-1 and -2, and related proteins | Back alignment and domain information |
|---|
Score = 80.0 bits (197), Expect = 3e-16
Identities = 78/294 (26%), Positives = 119/294 (40%), Gaps = 65/294 (22%)
Query: 552 LKILAGTWNVGQGRASQDALISW-----LGSAASDVG------IVVVGLQEVEMGAGFLA 600
+ I GTWN+G ++ + SW G DV I V+G QE +G
Sbjct: 1 ISIFIGTWNMGSAPPPKN-ITSWFTSKGQGKTRDDVADYIPHDIYVIGTQEDPLGE---- 55
Query: 601 MSAAKETVGLEGSAVGHWWLDMIGKILDDGS--TFERVGSRQLAGLLIAVWVRKNLKDYV 658
KE WLD++ L + + ++ + + L + I V + ++ +
Sbjct: 56 ----KE------------WLDLLRHSLKELTSLDYKPIAMQTLWNIRIVVLAKPEHENRI 99
Query: 659 GDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718
V ++V G +GNKGAVG+ FVN H + E RRN ++ ++ R
Sbjct: 100 SHVCTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNSHLTSGSEKKLRRNQNYLNILR- 158
Query: 719 MTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGI 778
S S+ R T+ + +LGD NYRLD +
Sbjct: 159 --------FLSLGDKKLSAFNITHRFTH------------------LFWLGDLNYRLD-L 191
Query: 779 TYDEARDFIS---QRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEK 829
EA + I Q+ F+ L DQL E E VF E +I FPPTY++E+
Sbjct: 192 PIQEAENIIQKIEQQQFEPLLRHDQLNLEREEHKVFLRFSEEEITFPPTYRYER 245
|
This subfamily contains the INPP5c domain of SHIP1 (SH2 domain containing inositol polyphosphate 5-phosphatase-1, also known as SHIP/INPP5D), and SHIP2 (also known as INPPL1). It belongs to a family of Mg2+-dependent inositol polyphosphate 5-phosphatases, which hydrolyze the 5-phosphate from the inositol ring of various 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs), and to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. Both SHIP1 and -2 catalyze the dephosphorylation of the PI, phosphatidylinositol 3,4,5-trisphosphate [PI(3,4,5)P3], to phosphatidylinositol 3,4-bisphosphate [PI(3,4)P2]. SHIP1 also converts inositol-1,3,4,5- polyphosphate [I(1,3,4,5)P4] to inositol-1,3,4-polyphosphate [I(1,3,4)P3]. SHIP1 and SHIP2 have little overlap in their in vivo functions. SHIP1 is a negative regulator of cell growth and plays a major part in mediating the inhibitory signaling in B cells; it is predominantly expressed in hematopoietic cells. SHIP2 is as an inhibitor of the insulin signaling pathway, and is implicated in actin structure remodeling, cell adhesion and cell spreading, receptor endocytosis and degradation, and in the JIP1-mediated JNK pathway. SHIP2 is widely expressed, most prominently in brain, heart and in skeletal muscle. In addition to this INPP5c domain, SHIP1 has an N-terminal SH2 domain, two NPXY motifs, and a C-terminal proline-rich region (PRD), while SHIP2 has an N-terminal SH2 domain, a C-terminal proline-rich domain (PRD), which includes a WW-domain binding motif (PPLP), an NPXY motif, and a sterile alpha motif (SAM) domain. The gene encoding SHIP2 is a candidate gene for conferring a predisposition for type 2 diabetes. Length = 307 |
| >gnl|CDD|197334 cd09100, INPP5c_SHIP1-INPP5D, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of SH2 domain containing inositol polyphosphate 5-phosphatase-1 and related proteins | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 1e-13
Identities = 72/300 (24%), Positives = 114/300 (38%), Gaps = 77/300 (25%)
Query: 552 LKILAGTWNVGQGRASQDALISWL-----GSAASDVG------IVVVGLQEVEMGAGFLA 600
+ I GTWN+G + + SW G D I V+G QE +G
Sbjct: 1 ITIFIGTWNMGNAPPPKK-ITSWFQCKGQGKTRDDTADYIPHDIYVIGTQEDPLGE---- 55
Query: 601 MSAAKETVGLEGSAVGHWWLDMIGKILDDGS--TFERVGSRQLAGLLIAVWVRKNLKDYV 658
KE WLD + L + + +F+ + + L + I V + ++ +
Sbjct: 56 ----KE------------WLDTLKHSLREITSISFKVIAIQTLWNIRIVVLAKPEHENRI 99
Query: 659 GDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718
+ +V G +GNKGAVG+ FVN H + E RRN ++ ++ R
Sbjct: 100 SHICTDSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNSHLTSGSEKKLRRNQNYFNILRF 159
Query: 719 MTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADM------VIFLGDFN 772
+ G +LS ++ + +LGD N
Sbjct: 160 LVL---------------------------------GDKKLSPFNITHRFTHLFWLGDLN 186
Query: 773 YRLDGITYDEARDFIS---QRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEK 829
YR++ EA + I Q+ + L DQL E + VF E +I F PTY+FE+
Sbjct: 187 YRVELPNT-EAENIIQKIKQQQYQELLPHDQLLIERKESKVFLQFEEEEITFAPTYRFER 245
|
This subfamily contains the INPP5c domain of SHIP1 (SH2 domain containing inositol polyphosphate 5-phosphatase-1, also known as SHIP/INPP5D) and related proteins. It belongs to a family of Mg2+-dependent inositol polyphosphate 5-phosphatases, which hydrolyze the 5-phosphate from the inositol ring of various 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs), and to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. SHIP1's enzymic activity is restricted to phosphatidylinositol 3,4,5-trisphosphate [PI (3,4,5)P3] and inositol-1,3,4,5- polyphosphate [I(1,3,4,5)P4]. It converts these two phosphoinositides to phosphatidylinositol 3,4-bisphosphate [PI (3,4)P2] and inositol-1,3,4-polyphosphate [I(1,3,4)P3], respectively. SHIP1 is a negative regulator of cell growth and plays a major part in mediating the inhibitory signaling in B cells; it is predominantly expressed in hematopoietic cells. In addition to this INPP5c domain, SHIP1 has an N-terminal SH2 domain, two NPXY motifs, and a C-terminal proline-rich region (PRD). SHIP1's phosphorylated NPXY motifs interact with proteins with phosphotyrosine binding (PTB) domains, and facilitate the translocation of SHIP1 to the plasma membrane to hydrolyze PI(3,4,5)P3. SHIP1 generally acts to oppose the activity of phosphatidylinositol 3-kinase (PI3K). It acts as a negative signaling molecule, reducing the levels of PI(3,4,5)P3, thereby removing the latter as a membrane-targeting signal for PH domain-containing effector molecules. SHIP1 may also, in certain contexts, amplify PI3K signals. SHIP1 and SHIP2 have little overlap in their in vivo functions. Length = 307 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (94), Expect = 0.003
Identities = 50/246 (20%), Positives = 86/246 (34%), Gaps = 44/246 (17%)
Query: 147 AGGENGLRVWNLK-------ELYDESESDSVSVSK------SKGEDGTA----------P 183
+ +R+W+L L S+S S S S DGT
Sbjct: 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSL 276
Query: 184 FKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGP 243
+ SSV+ + ++ SG DG + W + L+ + H GP
Sbjct: 277 LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL------ETGKLLSSLTLKGHEGP 330
Query: 244 VLSLCISSYGD--LWSGSEGGGIKIWPWEAIE-----------KALSLKPEERHTAALIV 290
V SL S G + GS+ G I++W + ++S P+ R ++
Sbjct: 331 VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGST 390
Query: 291 ERS-YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348
+ + + S S+ TS + +L + S + LWD +T F
Sbjct: 391 DGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
Query: 349 NIDGQI 354
+ DG++
Sbjct: 451 SPDGKV 456
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 838 | |||
| KOG0566 | 1080 | consensus Inositol-1,4,5-triphosphate 5-phosphatas | 100.0 | |
| PLN03191 | 621 | Type I inositol-1,4,5-trisphosphate 5-phosphatase | 100.0 | |
| smart00128 | 310 | IPPc Inositol polyphosphate phosphatase, catalytic | 100.0 | |
| COG5411 | 460 | Phosphatidylinositol 5-phosphate phosphatase [Sign | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.96 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.96 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.96 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.96 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.95 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.95 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.95 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.95 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.95 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.94 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.94 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.94 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.93 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.93 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.93 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.93 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.93 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.92 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.92 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.92 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.92 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.92 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.91 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.91 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.91 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.91 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.9 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.9 | |
| KOG0565 | 145 | consensus Inositol polyphosphate 5-phosphatase and | 99.9 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.9 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.89 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| PTZ00312 | 356 | inositol-1,4,5-triphosphate 5-phosphatase; Provisi | 99.87 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.87 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.87 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.86 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.86 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.86 | |
| PTZ00421 | 493 | coronin; Provisional | 99.86 | |
| PTZ00420 | 568 | coronin; Provisional | 99.86 | |
| PTZ00420 | 568 | coronin; Provisional | 99.86 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.85 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.85 | |
| PTZ00421 | 493 | coronin; Provisional | 99.85 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.84 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.84 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.83 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.83 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.82 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.82 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.82 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.81 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.81 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.81 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.81 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.8 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.8 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.79 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.79 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.79 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.77 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.77 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.77 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.76 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.76 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.76 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.75 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.74 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.74 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.73 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.73 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.73 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.73 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.72 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.72 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.71 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.71 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.71 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.7 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.7 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.69 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.68 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.68 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.68 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.66 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.66 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.65 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.64 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.64 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.64 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.64 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.63 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.63 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.62 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.61 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.6 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.6 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.59 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.59 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.58 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.58 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.57 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.57 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.56 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.55 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.54 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.52 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.52 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.48 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.47 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.46 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.46 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.46 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.46 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.44 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.43 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.43 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.42 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.42 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.41 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.41 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.4 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.4 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.4 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.39 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.39 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.38 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.37 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.36 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.34 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.33 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.32 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.31 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.3 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.26 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.25 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.25 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.24 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.23 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.22 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.2 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.19 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.18 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.17 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.17 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.17 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.16 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.14 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.13 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.12 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.11 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.07 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.06 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.05 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.03 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.03 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.02 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.01 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.0 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.0 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.95 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.92 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.89 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.87 | |
| KOG1976 | 391 | consensus Inositol polyphosphate 5-phosphatase, ty | 98.86 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.81 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.81 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.8 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.78 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.76 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.76 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.75 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.7 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.65 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.63 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.63 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.6 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.59 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.58 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.57 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.57 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.56 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.54 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.53 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.53 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.51 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.49 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.48 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.47 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.45 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.42 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.41 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.41 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.39 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.37 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.37 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.33 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.33 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.33 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.32 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.32 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.27 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.25 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.24 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.22 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.18 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.18 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.13 | |
| PF03372 | 249 | Exo_endo_phos: Endonuclease/Exonuclease/phosphatas | 98.13 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.13 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.08 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.04 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.04 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.04 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.04 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.02 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.0 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.98 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.96 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.94 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.92 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 97.91 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 97.89 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.89 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.88 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 97.86 | |
| PRK11756 | 268 | exonuclease III; Provisional | 97.84 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.84 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.83 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.83 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.83 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.83 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.76 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 97.74 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.73 | |
| PRK05421 | 263 | hypothetical protein; Provisional | 97.71 | |
| TIGR03395 | 283 | sphingomy sphingomyelin phosphodiesterase. Members | 97.7 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.63 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.59 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.58 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.55 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.53 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 97.52 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 97.48 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.45 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.34 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.32 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.31 | |
| TIGR00633 | 255 | xth exodeoxyribonuclease III (xth). This family is | 97.2 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.17 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.16 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 97.14 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 97.04 | |
| TIGR00195 | 254 | exoDNase_III exodeoxyribonuclease III. The model b | 97.02 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.01 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 96.96 | |
| KOG2756 | 349 | consensus Predicted Mg2+-dependent phosphodiestera | 96.9 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 96.83 | |
| PRK13911 | 250 | exodeoxyribonuclease III; Provisional | 96.83 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 96.78 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 96.74 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.73 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 96.71 | |
| smart00476 | 276 | DNaseIc deoxyribonuclease I. Deoxyribonuclease I c | 96.7 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 96.69 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.62 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 96.61 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 96.57 | |
| COG3568 | 259 | ElsH Metal-dependent hydrolase [General function p | 96.51 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 96.5 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 96.42 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 96.39 | |
| COG0708 | 261 | XthA Exonuclease III [DNA replication, recombinati | 96.28 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 96.25 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.2 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 96.19 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 96.11 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 95.97 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 95.96 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.85 | |
| PLN03144 | 606 | Carbon catabolite repressor protein 4 homolog; Pro | 95.62 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 95.51 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.47 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.47 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.4 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 95.28 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 95.2 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.07 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 95.0 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.93 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 94.92 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 94.75 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 94.67 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.67 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 94.23 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 94.22 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 94.18 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 93.98 | |
| KOG2338 | 495 | consensus Transcriptional effector CCR4-related pr | 93.7 | |
| PRK15251 | 271 | cytolethal distending toxin subunit CdtB; Provisio | 93.62 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 93.31 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.26 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 93.23 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 93.11 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 92.95 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 92.31 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 92.08 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.03 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 91.86 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 91.6 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.56 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 91.37 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 91.2 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 90.96 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 90.37 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 90.28 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 89.98 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 89.71 | |
| KOG3873 | 422 | consensus Sphingomyelinase family protein [Signal | 89.47 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 89.33 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 89.16 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 89.15 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 89.13 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 88.9 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 88.21 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 87.82 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 87.76 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 86.57 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 85.85 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 84.74 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 84.06 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 83.0 |
| >KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-64 Score=567.02 Aligned_cols=273 Identities=34% Similarity=0.578 Sum_probs=246.9
Q ss_pred CCCCeeeeecCCCCCCchhhhhhhhccccccccccceeeEEEEEEeCCCCCCc-ccccccccCC--C---CCceEEEEEe
Q 003217 516 NHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQ-DALISWLGSA--A---SDVGIVVVGL 589 (838)
Q Consensus 516 ~DgtIrlWdl~s~~~~d~~~~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~~~-~~l~~wl~~~--~---~~~di~vig~ 589 (838)
.|..+.+ ++|+...+..+|.++..+|+...+++||+||||||+..+.. ++|.+||... . ..+|||||||
T Consensus 506 ~q~~v~L-----~dpv~~yv~~~L~er~~eyt~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~ 580 (1080)
T KOG0566|consen 506 AQSAVIL-----YDPVHEYVLKELRERRSEYTEPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGF 580 (1080)
T ss_pred ccchhhh-----cCchhHHHHHHHHHhhhhhccccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEee
Confidence 3455544 34577888999999999999999999999999999854433 5899999965 2 2489999999
Q ss_pred ecc-cCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCC-CCCEEEEeeeecccEEEEEEEecCCcCccCceeeceee
Q 003217 590 QEV-EMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDD-GSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVP 667 (838)
Q Consensus 590 QE~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~-~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~ 667 (838)
||+ ++++|.+. ++ ...+.+.|++.|+++|+. ...|+++.|.||+|++|++|+|.+..++|++|+.++++
T Consensus 581 eEvVeLnag~iv-~A--------s~tk~~~Wee~i~~~Ln~~~~kYvlL~s~QlvGv~L~iF~r~~~~p~Ik~V~~~tkK 651 (1080)
T KOG0566|consen 581 EEVVELNAGNIV-SA--------STTKRRFWEEKILKTLNRYKNKYVLLRSEQLVGVCLLLFIRPDHAPYIKDVAGDTKK 651 (1080)
T ss_pred hhhhhcCcccee-cc--------ChHHHHHHHHHHHHHhcCCCCceEEEehhhhheeeEEEEEcccccchhhhcccceee
Confidence 997 68887542 11 224568999999999987 78999999999999999999999999999999999999
Q ss_pred cccCcccCCCceeEEEEEEcCeEEEEEeccccCCcchHHHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCC
Q 003217 668 CGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNP 747 (838)
Q Consensus 668 ~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (838)
|||||+.||||||+|||.+++|+|||||+||||+++|+++||.||.+|.++|+|+++.
T Consensus 652 TGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~snv~ERn~DY~tI~r~l~Fp~Gr---------------------- 709 (1080)
T KOG0566|consen 652 TGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSNVEERNEDYKTIARKLRFPRGR---------------------- 709 (1080)
T ss_pred cccccccCCCceEEEEEEeccccEEEEecccccccchHhhhhhhHHHHHHhccccCCc----------------------
Confidence 9999999999999999999999999999999999999999999999999999998743
Q ss_pred CCCCcccCCCCcCcccEEEEeccceeeecCCChHHHHHHhhhcchHHHhhccchHHHHhcCCCcCCcccCCCCCCCCCcc
Q 003217 748 LSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKF 827 (838)
Q Consensus 748 ~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~ 827 (838)
.|.+||+|||||||||||++ ++||++++|.+++|+.|+++|||+++|.+|.+|.||.|++|+|+|||||
T Consensus 710 ----------~I~~HD~ifW~GDFNYRI~l-~nEEVr~~v~~~d~~kL~e~DQL~~q~~~G~vF~gF~E~~ltF~PTYKy 778 (1080)
T KOG0566|consen 710 ----------MIFSHDYIFWLGDFNYRIDL-SNEEVRRLVRNQDLDKLLEYDQLTQQMNAGQVFPGFHEGQLTFPPTYKY 778 (1080)
T ss_pred ----------cccCCceEEEecccceeecC-CHHHHHHHHHhccHHHHhhHHHHHHHHhcCcccccccccccccCCcccc
Confidence 36789999999999999996 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcc
Q 003217 828 EKHLAGLA 835 (838)
Q Consensus 828 ~~~~~~~~ 835 (838)
|.||.+|.
T Consensus 779 D~gTd~YD 786 (1080)
T KOG0566|consen 779 DPGTDDYD 786 (1080)
T ss_pred cCCCCccc
Confidence 99999996
|
|
| >PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-58 Score=513.25 Aligned_cols=193 Identities=33% Similarity=0.597 Sum_probs=173.5
Q ss_pred hhHHHHHhhhcCCCCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEec
Q 003217 617 HWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNC 696 (838)
Q Consensus 617 ~~w~~~~~~~l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~ 696 (838)
|+|...+.........|++|.++||+||+|+||||+++.++|++|++++|+||++|.+||||||+|||+|++++||||||
T Consensus 348 ~~~~~~~~~~~~~~~~YvkV~S~qLvGl~L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~Ts~cFVn~ 427 (621)
T PLN03191 348 QLPEDLIKDCRKVKQKYVRIVSKQMVGIYVSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFVCS 427 (621)
T ss_pred hhhhHHHHhhccCCCCEEEEEEEeeeeEEEEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEcCcEEEEEEe
Confidence 44555555556566899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcc--hHHHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcCcccEEEEeccceee
Q 003217 697 HFAAHLE--AVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYR 774 (838)
Q Consensus 697 HLaa~~~--~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyR 774 (838)
|||||++ ++++||+||.+|++++.|...... .....|.+||+||||||||||
T Consensus 428 HLAAg~~~~~~~rRN~D~~~I~~~l~F~~~~~~--------------------------~~~~~I~dhD~vFWlGDLNYR 481 (621)
T PLN03191 428 HLTSGHKDGAEQRRNADVYEIIRRTRFSSVLDT--------------------------DQPQTIPSHDQIFWFGDLNYR 481 (621)
T ss_pred ccccccccchHHHHHHHHHHHHhccccCccccc--------------------------CCCccccccceEEEecCcccc
Confidence 9999875 578999999999999999742210 001236789999999999999
Q ss_pred ecCCChHHHHHHhhhcchHHHhhccchHHHHhcCCCcCCcccCCCCCCCCCcccCCCCCccC
Q 003217 775 LDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAG 836 (838)
Q Consensus 775 i~~~~~~~~~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~ 836 (838)
|++ ++++++++|.+++|+.||++|||+++|++|++|.||+|++|+|||||||++||+.|.+
T Consensus 482 Idl-~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~GF~Eg~I~FpPTYKYd~gSd~Ydg 542 (621)
T PLN03191 482 LNM-LDTEVRKLVAQKRWDELINSDQLIKELRSGHVFDGWKEGPIKFPPTYKYEINSDRYVG 542 (621)
T ss_pred ccC-CHHHHHHHHhhccHHHHHHHhHHHHHHHcCCccCCcccCCccCCCCcccccCCccccc
Confidence 996 8999999999999999999999999999999999999999999999999999999974
|
|
| >smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=477.75 Aligned_cols=245 Identities=36% Similarity=0.646 Sum_probs=216.9
Q ss_pred ceeeEEEEEEeCCCC-CCcccccccccCCC-----CCceEEEEEeecc-cCccchhhhhhhhhhccCCCCcchhhHHHHH
Q 003217 551 NLKILAGTWNVGQGR-ASQDALISWLGSAA-----SDVGIVVVGLQEV-EMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623 (838)
Q Consensus 551 ~~~i~~~twNv~~~~-~~~~~l~~wl~~~~-----~~~di~vig~QE~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 623 (838)
.++|+++|||||+.. +++++|.+||.... .+||||||||||+ ++.+..+.+ ..+.....|.+.+
T Consensus 2 ~~~v~v~TwNv~~~~~~p~~~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~---------~~~~~~~~W~~~i 72 (310)
T smart00128 2 DIKVLVGTWNVGGLKADPKVDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLE---------TIAGKERLWSKLI 72 (310)
T ss_pred ceEEEEEEEECCCccCCChhhHHHhhccccccccCCCCCEEEEEeeeecccchhhhhh---------ccchhHHHHHHHH
Confidence 478999999999875 55789999998632 5689999999999 454332211 1234467899999
Q ss_pred hhhcCCCCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcc
Q 003217 624 GKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (838)
Q Consensus 624 ~~~l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~ 703 (838)
...|..+..|.++++.+|+||+|+||+|+++.++|++|+++.+++|+++.+||||||+++|++.+++||||||||+||++
T Consensus 73 ~~~l~~~~~Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~ 152 (310)
T smart00128 73 ESSLNGDGQYNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGAS 152 (310)
T ss_pred HHhcCCCCceEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccc
Confidence 99997668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcCcccEEEEeccceeeecCCCh-HH
Q 003217 704 AVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITY-DE 782 (838)
Q Consensus 704 ~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~-~~ 782 (838)
++++||+||.+|++++.|+.... ..+.++|++||||||||||++ ++ ++
T Consensus 153 ~~~~R~~~~~~I~~~~~f~~~~~------------------------------~~~~~~d~~f~~GDlNyRi~~-~~~~~ 201 (310)
T smart00128 153 NVEQRNQDYKTILRALSFPERAE------------------------------LSQFDHDVVFWFGDLNFRLDS-PSYEE 201 (310)
T ss_pred hhhhhHHHHHHHHHhcCCCCCcc------------------------------ccccccceEEEecCcceeecC-CCHHH
Confidence 99999999999999998875321 114579999999999999997 55 89
Q ss_pred HHHHhhhcchHHHhhccchHHHHhcCCCcCCcccCCCCCCCCCccc-CCCCCcc
Q 003217 783 ARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE-KHLAGLA 835 (838)
Q Consensus 783 ~~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~-~~~~~~~ 835 (838)
+++++.+++|+.|+++|||+.+|+++++|.||.|++|+|||||||+ .|+++|.
T Consensus 202 v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~~t~~Yd 255 (310)
T smart00128 202 VRRKISKKEFDDLLEKDQLNRQKEAGKVFKGFQEGPITFPPTYKYDSVGTETYD 255 (310)
T ss_pred HHHHHhhCcHHHHhhhhhHHHHhhcccccCcCccCCcCCCCCeeecCCCCcccc
Confidence 9999999999999999999999999999999999999999999999 9999875
|
Mg(2+)-dependent/Li(+)-sensitive enzymes. |
| >COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=407.17 Aligned_cols=266 Identities=32% Similarity=0.472 Sum_probs=235.2
Q ss_pred CCCCchhhhhhhhccccccccccceeeEEEEEEeCCCCCCcccccccccC---CCCCceEEEEEeecc-cCccchhhhhh
Q 003217 528 PGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGS---AASDVGIVVVGLQEV-EMGAGFLAMSA 603 (838)
Q Consensus 528 ~~~~d~~~~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~~~~~l~~wl~~---~~~~~di~vig~QE~-~~~~~~~~~~~ 603 (838)
++|..-.+.+++..++..|.....+.+|++++|.+++.+ ...++.||.. ...-+|+||+||||+ +++.+.+. ++
T Consensus 6 ~~p~~~y~~~~l~~~~sk~~~~~~~~~f~~~~n~~~~~~-k~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~sil-s~ 83 (460)
T COG5411 6 YDPRHPYIVAVLRQRRSKYVIEKDVSIFVSTFNPPGKPP-KASTKRWLFPEIEATELADLYVVGLQEVVELTPGSIL-SA 83 (460)
T ss_pred cCCCchhHHHHHHHHhhhheeecceeeEeccccCCCCCc-hhhhhhhcccccccccccceEEeccceeeeccchhhc-cC
Confidence 566667777888888899999999999999999998766 6788999996 224489999999997 57665432 11
Q ss_pred hhhhccCCCCcchhhHHHHHhhhcC---CCCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCcee
Q 003217 604 AKETVGLEGSAVGHWWLDMIGKILD---DGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAV 680 (838)
Q Consensus 604 ~~~~~~~~~~~~~~~w~~~~~~~l~---~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v 680 (838)
.-...-+.|+..+...|+ ..++|.++.+.||+|+.+.||++.+.++.+.+|+...-+||+||..+|||+|
T Consensus 84 -------~p~~rl~~wes~~~~~Ln~~~~~eky~~l~s~q~~~~~~~vf~~~~~~~v~~~V~~~~~KtG~gg~s~nKGav 156 (460)
T COG5411 84 -------DPYDRLRIWESKVLDCLNGAQSDEKYSLLRSPQLGGILLRVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGAV 156 (460)
T ss_pred -------CcccccchhHHHHHHHhcccccCCceEEecchhccCcceEEeeeccccceeccccccccccccceeccccccc
Confidence 112334789999998886 4678999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCeEEEEEeccccCCcchHHHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcC
Q 003217 681 GLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELS 760 (838)
Q Consensus 681 ~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (838)
+++|.+.++.+||||||||||.+|+++|+.||+.|.+.++|.+.. .+.
T Consensus 157 ~i~~~~~~t~~cFv~shlaag~~N~eeR~~Dy~~I~~~i~f~~g~--------------------------------~I~ 204 (460)
T COG5411 157 AIRFNYERTSFCFVNSHLAAGVNNIEERIFDYRSIASNICFSRGL--------------------------------RIY 204 (460)
T ss_pred ceeEEeecCCcEEEecchhcccccHHHHHHHHHHHHHheecCCCc--------------------------------eec
Confidence 999999999999999999999999999999999999999998643 367
Q ss_pred cccEEEEeccceeeecCCChHHHHHHhhhcc--hHHHhhccchHHHHhcCCCcCCcccCCCCCCCCCcccCCCCCcc
Q 003217 761 EADMVIFLGDFNYRLDGITYDEARDFISQRC--FDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLA 835 (838)
Q Consensus 761 ~~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~--~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~ 835 (838)
+||++||+|||||||++ ++++++..+...+ +++|+++|||.+||+.|++|.||.|..|+|||||||+.||.+|.
T Consensus 205 ~hdti~w~GDlNyRVts-~~e~v~~~~~~~~g~~~~l~~~DqL~~e~~~g~~f~~f~E~~i~FpPTYKfd~gt~~yd 280 (460)
T COG5411 205 DHDTIFWLGDLNYRVTS-TNEEVRPEIASDDGRLDKLFEYDQLLWEMEVGNVFPGFKEPVITFPPTYKFDYGTDEYD 280 (460)
T ss_pred ccceEEEecccCceeec-CchhcchhhhCCcchhhhhhhhhhHhhhhcccccccceecccccCCCceEeecCCcccc
Confidence 89999999999999997 8899988887766 88999999999999999999999999999999999999999885
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=342.49 Aligned_cols=326 Identities=18% Similarity=0.225 Sum_probs=250.0
Q ss_pred cCCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003217 141 TEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (838)
Q Consensus 141 ~~~~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd 219 (838)
++.+|.+| .|.++|+||+.+-.+. |+-..| .++|.|++++|||+.||||+.||+|++||
T Consensus 126 ~g~~l~tGsGD~TvR~WD~~TeTp~-------------------~t~KgH-~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 126 TGSRLVTGSGDTTVRLWDLDTETPL-------------------FTCKGH-KNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred CCceEEecCCCceEEeeccCCCCcc-------------------eeecCC-ccEEEEEEECCCcchhhccccCCeEEEec
Confidence 45577774 5999999999763221 222344 88999999999999999999999999999
Q ss_pred CCCCccCCCCCcceeEEeccccccEEEEEEecC-----CC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeec
Q 003217 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-----GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (838)
Q Consensus 220 ~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-----G~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (838)
..+|. +....|.||+.+|++++|-|- .+ |+|+|.||+|||||+..+.+.+.+.
T Consensus 186 pktg~-------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-------------- 244 (480)
T KOG0271|consen 186 PKTGQ-------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-------------- 244 (480)
T ss_pred CCCCC-------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec--------------
Confidence 99885 566789999999999999763 33 8999999999999997655544433
Q ss_pred eeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCc---ccccc
Q 003217 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP---DFAME 369 (838)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~---~~~~~ 369 (838)
+| +..|.|+..+ +.+.+++++ |+||++|++..|.+++.|.+|++.++.++++... ...++
T Consensus 245 -----gH----------T~~VTCvrwG-G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~ 308 (480)
T KOG0271|consen 245 -----GH----------TASVTCVRWG-GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFD 308 (480)
T ss_pred -----cC----------ccceEEEEEc-CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccc
Confidence 23 5568888876 356788887 7899999999999999999999998887776421 11111
Q ss_pred ccee-eEEEecCCCCccee--eeeEeecCcceeeecCCcEEEEec----c---CccccCCCceEEEEEcCCCc-EEEEEC
Q 003217 370 DEFK-TKIVTSSKKDKAQS--SFGFFQRSRNAIMGAADAVRRVAA----K---GGFGDDNRRTEALTTSIDGM-IWTGGA 438 (838)
Q Consensus 370 ~~~~-~~~~s~~~~~~~~~--s~~~~~~~~~~~~g~~~~v~~v~~----~---g~~~~~~~~v~ala~S~dg~-l~Sgs~ 438 (838)
..-+ .+-.+.. +.++.. ....-+.+.....|+.|...-+|. + ....+|..-|..+.||||++ |+|+|-
T Consensus 309 ~t~~~~~~~se~-~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF 387 (480)
T KOG0271|consen 309 HTGRKPKSFSEE-QKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF 387 (480)
T ss_pred cccccCCChHHH-HHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec
Confidence 1100 0000000 000000 000111123456777777666664 1 23457889999999999998 799999
Q ss_pred CCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEE--eCCCEEE
Q 003217 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIF 512 (838)
Q Consensus 439 DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~ 512 (838)
|+.||+||. +|+.+.+|.||-.+|+.++. |.+.|+|||.|.|+++||+. .++...|.||.+.|.++. +||+.++
T Consensus 388 DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 388 DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred ccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceee
Confidence 999999999 89999999999999999975 67799999999999999998 467889999999999997 5999999
Q ss_pred EEcCCCCeeeee
Q 003217 513 TLANHGGIRGWN 524 (838)
Q Consensus 513 S~S~DgtIrlWd 524 (838)
||+.|+.+|+|.
T Consensus 468 sggkdkv~~lw~ 479 (480)
T KOG0271|consen 468 SGGKDKVLRLWR 479 (480)
T ss_pred cCCCceEEEeec
Confidence 999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=307.74 Aligned_cols=318 Identities=17% Similarity=0.249 Sum_probs=222.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..+|.|++|+|+|+.|+||+-|.|+|+||+.+. .+..+.+||...|.+|+++|||+ |+||+.||+|++||.
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--------Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--------TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred CCcEEEEEecCCCceEEecCCCceEEeeccCCC--------CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 789999999999999999999999999999997 56788999999999999999998 899999999999999
Q ss_pred CCcceee-ecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 270 EAIEKAL-SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 270 ~~~~~~~-~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
.+++... .+..+..++.+++-++- -..+...++++++ |++|+|||+..|.++.+
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~------------------------hl~p~~r~las~skDg~vrIWd~~~~~~~~~ 242 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPL------------------------HLVPPCRRLASSSKDGSVRIWDTKLGTCVRT 242 (480)
T ss_pred CCCCcccccccCcccceeEEeeccc------------------------ccCCCccceecccCCCCEEEEEccCceEEEE
Confidence 8765432 23333334333311110 0112334566665 78999999999999999
Q ss_pred EecCCceEEeeecccC---cccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec-------cCcccc
Q 003217 348 FNIDGQIENRVDMSLL---PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-------KGGFGD 417 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~---~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-------~g~~~~ 417 (838)
+.+|...++.+..-.. ...+-|..+| +|.... ++- -..+.||+-.|..++. .|.|..
T Consensus 243 lsgHT~~VTCvrwGG~gliySgS~DrtIk--vw~a~d-G~~----------~r~lkGHahwvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEGLIYSGSQDRTIK--VWRALD-GKL----------CRELKGHAHWVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred eccCccceEEEEEcCCceEEecCCCceEE--EEEccc-hhH----------HHhhcccchheeeeeccchhhhhcccccc
Confidence 9988775543322110 0111111122 221110 000 0123333333333321 122211
Q ss_pred CCCc--------------eEEEEEcCCCcEEEEECCCeEEEEcC-C-CCeeeEeecCCccEEEE--EEcCCEEEEEeeCC
Q 003217 418 DNRR--------------TEALTTSIDGMIWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNG 479 (838)
Q Consensus 418 ~~~~--------------v~ala~S~dg~l~Sgs~DgtIrlWD~-~-g~~l~tl~~H~~~V~sl--s~dG~~LasGs~Dg 479 (838)
...+ -+++.-....+|+|||+|.++.+|+. . .+++..+++|..-|+.+ ++|+++||++|.|.
T Consensus 310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk 389 (480)
T KOG0271|consen 310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK 389 (480)
T ss_pred ccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc
Confidence 0000 00111111136999999999999999 3 57999999999999977 46899999999999
Q ss_pred eEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCCCchhhhhhhhccccccccccceeeEE
Q 003217 480 IVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILA 556 (838)
Q Consensus 480 tIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~~d~~~~~~l~~r~~~y~~~~~~~i~~ 556 (838)
.|||||.. |+.+.+|.||-+.|+.+++ |.+.|+|+|.|.|+|+|++++.....++..+ +. .+|.
T Consensus 390 SVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh-----~D--------EVf~ 456 (480)
T KOG0271|consen 390 SVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH-----AD--------EVFA 456 (480)
T ss_pred ceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCC-----Cc--------eEEE
Confidence 99999976 9999999999999999996 6779999999999999999886555544321 11 2888
Q ss_pred EEEEeCCCCC
Q 003217 557 GTWNVGQGRA 566 (838)
Q Consensus 557 ~twNv~~~~~ 566 (838)
..|...+.+.
T Consensus 457 vDwspDG~rV 466 (480)
T KOG0271|consen 457 VDWSPDGQRV 466 (480)
T ss_pred EEecCCCcee
Confidence 8998877655
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=298.95 Aligned_cols=266 Identities=17% Similarity=0.195 Sum_probs=222.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC--C-CEEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--G-DLWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G-~L~SgS~DgtIrvW 267 (838)
+.||..+.|+.+++.|+|||.+|.++||+..+. ..+.+|.||+..|.++.|+|. + .|+|||.||+||+|
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCc--------ceeEEEeccccceeeEEEccCCCccceeeeccCCceeee
Confidence 789999999999999999999999999999886 678899999999999999997 3 38999999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
++++......+ .+| ...|..+++.++|..+.+++ |.+-++||++|+..+.
T Consensus 247 ~~~~e~~l~~l-------------------~gH----------~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL 297 (459)
T KOG0272|consen 247 KLSQETPLQDL-------------------EGH----------LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL 297 (459)
T ss_pred ccCCCcchhhh-------------------hcc----------hhhheeeeecCCCceeeecccccchhhcccccchhhH
Confidence 99763322222 222 22456678889999999988 5789999999998876
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC----ccccCCC
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNR 420 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~ 420 (838)
..++|...+. ++.|.+++..+.+|..|..-|+|. +| .+.+|.+
T Consensus 298 ~QEGHs~~v~-------------------------------~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k 346 (459)
T KOG0272|consen 298 LQEGHSKGVF-------------------------------SIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK 346 (459)
T ss_pred hhcccccccc-------------------------------eeEecCCCceeeccCccchhheeecccCcEEEEeccccc
Confidence 6666654322 245555566666777777777776 23 3567999
Q ss_pred ceEEEEEcCCCc-EEEEECCCeEEEEcCC-CCeeeEeecCCccEEEEEE---cCCEEEEEeeCCeEEEEeCC-Ccccccc
Q 003217 421 RTEALTTSIDGM-IWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (838)
Q Consensus 421 ~v~ala~S~dg~-l~Sgs~DgtIrlWD~~-g~~l~tl~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i~~l 494 (838)
.|.+|+|||+|+ |++||.|+++||||+. -+++.++.+|.+-|..|.+ .|.+|++++.|++++||... +++++++
T Consensus 347 ~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL 426 (459)
T KOG0272|consen 347 EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL 426 (459)
T ss_pred ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh
Confidence 999999999998 8999999999999995 5789999999999998865 37799999999999999987 6899999
Q ss_pred cccccCEEEEE--eCCCEEEEEcCCCCeeeee
Q 003217 495 VAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 495 ~gH~~~V~sla--~dg~~l~S~S~DgtIrlWd 524 (838)
.||.+.|.++. .|++.++|+|.|.|+|+|.
T Consensus 427 aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 427 AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999986 6899999999999999996
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=283.81 Aligned_cols=269 Identities=22% Similarity=0.360 Sum_probs=207.5
Q ss_pred eEEEEecCCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 003217 135 LRTIVCTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (838)
Q Consensus 135 ~~~l~~~~~~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DG 213 (838)
++++..+...+.+| -|++|+|||..+.++... -.+| +++|+|+.++. +.|+|||+|.
T Consensus 200 VYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GH-tGSVLCLqyd~--rviisGSSDs 257 (499)
T KOG0281|consen 200 VYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKI-------------------LTGH-TGSVLCLQYDE--RVIVSGSSDS 257 (499)
T ss_pred eEEEEecchhhhcccccCceEEeccccHHHHHh-------------------hhcC-CCcEEeeeccc--eEEEecCCCc
Confidence 44444555556555 499999999987654321 2244 89999999974 7999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeec
Q 003217 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (838)
|||+||.++| +++.++.+|..+|..+.|+. |.++|+|.|.+|+|||+..... .++. .
T Consensus 258 TvrvWDv~tg--------e~l~tlihHceaVLhlrf~n-g~mvtcSkDrsiaVWdm~sps~-it~r------r------- 314 (499)
T KOG0281|consen 258 TVRVWDVNTG--------EPLNTLIHHCEAVLHLRFSN-GYMVTCSKDRSIAVWDMASPTD-ITLR------R------- 314 (499)
T ss_pred eEEEEeccCC--------chhhHHhhhcceeEEEEEeC-CEEEEecCCceeEEEeccCchH-HHHH------H-------
Confidence 9999999998 67888999999999999986 7899999999999999965321 1110 0
Q ss_pred eeecccceeccceeeeecCCeEEEEEcCCCCEEEEe-CCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccce
Q 003217 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (838)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (838)
.|.+| -..|..+-++ ...|.++ +|.||++|++.|+++++++.+|..-
T Consensus 315 --VLvGH----------rAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRG------------------ 362 (499)
T KOG0281|consen 315 --VLVGH----------RAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG------------------ 362 (499)
T ss_pred --HHhhh----------hhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhccccc------------------
Confidence 01222 1223444443 2344444 4789999999999999888655310
Q ss_pred eeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCe
Q 003217 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNR 451 (838)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~ 451 (838)
+. ++.+ .+..++|||.|.|||+||+ .|.|
T Consensus 363 ---------------------------------IA----------------ClQY-r~rlvVSGSSDntIRlwdi~~G~c 392 (499)
T KOG0281|consen 363 ---------------------------------IA----------------CLQY-RDRLVVSGSSDNTIRLWDIECGAC 392 (499)
T ss_pred ---------------------------------ce----------------ehhc-cCeEEEecCCCceEEEEeccccHH
Confidence 00 0000 1223789999999999999 7999
Q ss_pred eeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-C---------cccccccccccCEEEEEeCCCEEEEEcCCCCee
Q 003217 452 LQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-G---------NLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIR 521 (838)
Q Consensus 452 l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g---------~~i~~l~gH~~~V~sla~dg~~l~S~S~DgtIr 521 (838)
++.++||..-|.|+-+|.++|++|..||+|++||+. + -|+.++.-|++.|..+.+|.-.++|.+.|.+|-
T Consensus 393 LRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtIL 472 (499)
T KOG0281|consen 393 LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTIL 472 (499)
T ss_pred HHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEE
Confidence 999999999999999999999999999999999964 2 167889999999999999999999999999999
Q ss_pred eeecCCCCC
Q 003217 522 GWNVTSPGP 530 (838)
Q Consensus 522 lWdl~s~~~ 530 (838)
+||+-...|
T Consensus 473 iWdFl~~~~ 481 (499)
T KOG0281|consen 473 IWDFLNGPP 481 (499)
T ss_pred EEEcCCCCc
Confidence 999876444
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=274.46 Aligned_cols=231 Identities=19% Similarity=0.269 Sum_probs=184.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (838)
...|+|+.+|. +.++||..|.||++||..+- .+...+.||++.|.|+.|..- -|+|||.|.||||||++
T Consensus 197 skgVYClQYDD--~kiVSGlrDnTikiWD~n~~--------~c~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~ 265 (499)
T KOG0281|consen 197 SKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSL--------ECLKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVN 265 (499)
T ss_pred CCceEEEEecc--hhhhcccccCceEEeccccH--------HHHHhhhcCCCcEEeeeccce-EEEecCCCceEEEEecc
Confidence 44799999973 67899999999999999885 567788999999999998652 37899999999999999
Q ss_pred CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEec
Q 003217 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (838)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~ 350 (838)
+++..-++..+ ...|..+.++ .+-.|-++.|.+|++||+.+-.-+
T Consensus 266 tge~l~tlihH-----------------------------ceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~i----- 310 (499)
T KOG0281|consen 266 TGEPLNTLIHH-----------------------------CEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDI----- 310 (499)
T ss_pred CCchhhHHhhh-----------------------------cceeEEEEEe-CCEEEEecCCceeEEEeccCchHH-----
Confidence 87754433221 2334555554 344555555889999998532100
Q ss_pred CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCC
Q 003217 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (838)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~d 430 (838)
. -+.++. +|...|..+.|+.
T Consensus 311 --------------------t-----------------------~rrVLv----------------GHrAaVNvVdfd~- 330 (499)
T KOG0281|consen 311 --------------------T-----------------------LRRVLV----------------GHRAAVNVVDFDD- 330 (499)
T ss_pred --------------------H-----------------------HHHHHh----------------hhhhheeeecccc-
Confidence 0 011222 3334444455533
Q ss_pred CcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEeCC
Q 003217 431 GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGA 508 (838)
Q Consensus 431 g~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg 508 (838)
..|+|+|.|.|||+|+. ++++++++.+|...|-|+-..|+.+++|++|.+|||||.+ |.|++.+.||.+-|.+|.+|.
T Consensus 331 kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~ 410 (499)
T KOG0281|consen 331 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 410 (499)
T ss_pred ceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC
Confidence 36899999999999999 7999999999999999999999999999999999999998 999999999999999999999
Q ss_pred CEEEEEcCCCCeeeeecCC
Q 003217 509 GYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 509 ~~l~S~S~DgtIrlWdl~s 527 (838)
+.++||+.||+||+||+..
T Consensus 411 krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred ceeeeccccceEEEEeccc
Confidence 9999999999999999865
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-29 Score=250.81 Aligned_cols=269 Identities=17% Similarity=0.212 Sum_probs=216.1
Q ss_pred EEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003217 138 IVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIM 216 (838)
Q Consensus 138 l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIr 216 (838)
.+.+.+.+.+ ++|+.+-|||.-+.... .+-| +. ..+|+.+||+|.|+.+|.|+-|+..-
T Consensus 63 ws~Dsr~ivSaSqDGklIvWDs~TtnK~---------------haip----l~-s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 63 WSTDSRRIVSASQDGKLIVWDSFTTNKV---------------HAIP----LP-SSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred ecCCcCeEEeeccCCeEEEEEcccccce---------------eEEe----cC-ceeEEEEEECCCCCeEEecCcCceeE
Confidence 3445666665 77999999998654322 1122 33 67999999999999999999999999
Q ss_pred EEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceee
Q 003217 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (838)
Q Consensus 217 vWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 296 (838)
|+++.+.. .....+....+.||++.+.++.|-+|++|+|||.|.|.-+||++++++...+..
T Consensus 123 iy~ls~~d--~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~G---------------- 184 (343)
T KOG0286|consen 123 IYPLSTRD--AEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHG---------------- 184 (343)
T ss_pred EEeccccc--ccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecC----------------
Confidence 99998641 112223456789999999999999999999999999999999998766544432
Q ss_pred cccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceee
Q 003217 297 LRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (838)
Q Consensus 297 l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (838)
| .++|..|...+ ++....+++ |.+.+|||++.+.+.++|.+|..
T Consensus 185 ---H----------~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes--------------------- 230 (343)
T KOG0286|consen 185 ---H----------TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES--------------------- 230 (343)
T ss_pred ---C----------cccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc---------------------
Confidence 2 56788888877 666777776 78999999999999888866532
Q ss_pred EEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCee
Q 003217 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRL 452 (838)
Q Consensus 375 ~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l 452 (838)
.|.+|.|-|+|. +++||+|+++|++|+ ..+.+
T Consensus 231 ----------------------------------------------DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~ 264 (343)
T KOG0286|consen 231 ----------------------------------------------DINSVRFFPSGDAFATGSDDATCRLYDLRADQEL 264 (343)
T ss_pred ----------------------------------------------ccceEEEccCCCeeeecCCCceeEEEeecCCcEE
Confidence 234556667777 899999999999999 67788
Q ss_pred eEeecC--CccEEEEEE--cCCEEEEEeeCCeEEEEeC-CCcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeee
Q 003217 453 QDFQYL--PFAVQCLCT--FGSQIWVGYMNGIVQVLDL-EGNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 453 ~tl~~H--~~~V~sls~--dG~~LasGs~DgtIrlWD~-~g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWd 524 (838)
..|... ...|+++++ .|++|.+|+.|.++.+||. +++.+..|.||.+.|.+|. +||.-++|||+|.++|||.
T Consensus 265 a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 265 AVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 887642 347888866 6999999999999999995 6889999999999999986 6899999999999999994
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=261.96 Aligned_cols=267 Identities=18% Similarity=0.196 Sum_probs=211.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..+|..+.+.|+--++++++.|++|++||..++ +....++||+++|.+|+|+..|+ |+|+|.|-.+++||.
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg--------~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETG--------ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEccch--------hhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 789999999999999999999999999999998 56778999999999999999998 789999999999999
Q ss_pred CCc-ceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 270 EAI-EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 270 ~~~-~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
++. .+..++.. | ...+.++++-+.+..|.|++ |.+|+.|+..||.++++
T Consensus 180 ~~~~~c~ks~~g-------------------h----------~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t 230 (406)
T KOG0295|consen 180 DTFFRCIKSLIG-------------------H----------EHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT 230 (406)
T ss_pred HHHHHHHHHhcC-------------------c----------ccceeeEEEEecCCeeeecccccceeEEecccceeEEe
Confidence 762 22111111 1 12345566666677888877 68999999999999999
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec------cCccccCCCc
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA------KGGFGDDNRR 421 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~------~g~~~~~~~~ 421 (838)
|.+|.+++..+....+. .....++.+-..++|. +..+.+|...
T Consensus 231 ~~~h~ewvr~v~v~~DG-------------------------------ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~ 279 (406)
T KOG0295|consen 231 FPGHSEWVRMVRVNQDG-------------------------------TIIASCSNDQTLRVWVVATKQCKAELREHEHP 279 (406)
T ss_pred ccCchHhEEEEEecCCe-------------------------------eEEEecCCCceEEEEEeccchhhhhhhccccc
Confidence 99998865433332211 1122233333344443 1345566666
Q ss_pred eEEEEEcCC---------------C-cEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc--CCEEEEEeeCCeEE
Q 003217 422 TEALTTSID---------------G-MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQ 482 (838)
Q Consensus 422 v~ala~S~d---------------g-~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d--G~~LasGs~DgtIr 482 (838)
|+++++.|. + .+.+++.|++||+||+ +|.|+-++.+|.++|..+++. |++|+|+..|++++
T Consensus 280 vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlr 359 (406)
T KOG0295|consen 280 VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLR 359 (406)
T ss_pred eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEE
Confidence 776665543 1 3789999999999999 899999999999999999875 99999999999999
Q ss_pred EEeCC-CcccccccccccCEEEEEeCC--CEEEEEcCCCCeeeeec
Q 003217 483 VLDLE-GNLLGGWVAHSSPVIKMAVGA--GYIFTLANHGGIRGWNV 525 (838)
Q Consensus 483 lWD~~-g~~i~~l~gH~~~V~sla~dg--~~l~S~S~DgtIrlWdl 525 (838)
+||+. ++|..++.+|...|+++.++. -+++|||-|.++++|..
T Consensus 360 vwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 360 VWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99997 789999999999999999753 38999999999999963
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=274.04 Aligned_cols=363 Identities=18% Similarity=0.181 Sum_probs=246.0
Q ss_pred eEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCC--CEEEEE
Q 003217 135 LRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS--GVVWSG 209 (838)
Q Consensus 135 ~~~l~~~~~-~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg--~~LaSG 209 (838)
+-.+++++. .|.+ |.|+.|+|||+...+.... |++ + .+.|.++.|.|+- .+|++|
T Consensus 108 vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~-----------------fkG--~-gGvVssl~F~~~~~~~lL~sg 167 (775)
T KOG0319|consen 108 VITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHS-----------------FKG--H-GGVVSSLLFHPHWNRWLLASG 167 (775)
T ss_pred eEEEEEcCCCceEEeccccceEEEEEeeCCEEEEE-----------------ecC--C-CceEEEEEeCCccchhheeec
Confidence 334555533 5554 6799999999987654322 433 2 7789999999865 469999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecC---------
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLK--------- 279 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~--------- 279 (838)
..|+++|+||+.+.. .+..++++|...|++++|++|+. ++|++.|..|.|||+...++...+.
T Consensus 168 ~~D~~v~vwnl~~~~-------tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv 240 (775)
T KOG0319|consen 168 ATDGTVRVWNLNDKR-------TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVV 240 (775)
T ss_pred CCCceEEEEEcccCc-------hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEE
Confidence 999999999998752 35678899999999999999997 8999999999999985422111110
Q ss_pred ---C------------Ccee-----------------------------------eeEEEEeeceeec--cc--------
Q 003217 280 ---P------------EERH-----------------------------------TAALIVERSYIDL--RS-------- 299 (838)
Q Consensus 280 ---~------------~~~~-----------------------------------~~~~~~~~s~~~l--~~-------- 299 (838)
. .+.. +..+.-+..++.. ..
T Consensus 241 ~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~iv 320 (775)
T KOG0319|consen 241 RLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIV 320 (775)
T ss_pred EechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhc
Confidence 0 0000 0000000000000 00
Q ss_pred --ceeccce----------------------------eee---ecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCcc--
Q 003217 300 --HLSVNGF----------------------------SSI---LTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE-- 343 (838)
Q Consensus 300 --~~~~~~~----------------------------~~~---~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~-- 343 (838)
+..+..+ |++ ++.-+.++....+|..+++++ |+++++|-+..+.
T Consensus 321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~ 400 (775)
T KOG0319|consen 321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK 400 (775)
T ss_pred CCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch
Confidence 0000000 000 112234444344556777777 7899999764332
Q ss_pred --EEEEEecCCceEEeeecccC-----cccccccceeeEEEecC----------------CCCcceeeeeEeecCcceee
Q 003217 344 --LLKVFNIDGQIENRVDMSLL-----PDFAMEDEFKTKIVTSS----------------KKDKAQSSFGFFQRSRNAIM 400 (838)
Q Consensus 344 --~l~~l~~~~~~~~~~~~s~~-----~~~~~~~~~~~~~~s~~----------------~~~~~~~s~~~~~~~~~~~~ 400 (838)
++....+|...+..+.++.. ...+-|..+|+|....+ .++|.+.++...++...+.+
T Consensus 401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT 480 (775)
T KOG0319|consen 401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT 480 (775)
T ss_pred hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence 22333445443334444221 11122444454443321 23555667788888788888
Q ss_pred ecCCcEEEEec------cCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCC
Q 003217 401 GAADAVRRVAA------KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGS 470 (838)
Q Consensus 401 g~~~~v~~v~~------~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~ 470 (838)
|+.|-...+|. .|++.+|.+.|.+|.|++..+ ++++|.|+|||||.+ +..|+++|.||+..|.-.++ +|+
T Consensus 481 ~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~ 560 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGK 560 (775)
T ss_pred cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCc
Confidence 88887777765 467788999999999999877 789999999999999 78999999999999997655 788
Q ss_pred EEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 471 QIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 471 ~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
+|+|+++||-|+||+.+ +.|+.++.+|++.||+++. ....++||+.|+.|.+|.
T Consensus 561 qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 561 QLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred EEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 99999999999999997 6799999999999999884 566889999999999997
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-29 Score=279.94 Aligned_cols=244 Identities=19% Similarity=0.331 Sum_probs=197.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------------c-----------CCCCCcceeEEeccccccEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL------------L-----------DSDDGFGEVLSWQAHRGPVLSL 247 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~------------~-----------~~~~~~~~~~~l~gH~~~V~sl 247 (838)
...|.|..|++|+.+||-|-.|-.|++|.+.... . .+...-....++.||.+||.++
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 5579999999999999999999999999987311 0 0011122345688999999999
Q ss_pred EEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEE
Q 003217 248 CISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKV 326 (838)
Q Consensus 248 afs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V 326 (838)
.|+|+.+ |+|+|+|++||+|.+.+..+.+.+. +| ...|-.+.++|-|...
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-------------------GH----------~~PVwdV~F~P~GyYF 508 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-------------------GH----------LAPVWDVQFAPRGYYF 508 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEec-------------------CC----------CcceeeEEecCCceEE
Confidence 9999998 7999999999999998765544332 22 2234455677778888
Q ss_pred EEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCc
Q 003217 327 WSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA 405 (838)
Q Consensus 327 ~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~ 405 (838)
++++ |+|.++|....-++++.|
T Consensus 509 atas~D~tArLWs~d~~~PlRif--------------------------------------------------------- 531 (707)
T KOG0263|consen 509 ATASHDQTARLWSTDHNKPLRIF--------------------------------------------------------- 531 (707)
T ss_pred EecCCCceeeeeecccCCchhhh---------------------------------------------------------
Confidence 8877 578899987654444333
Q ss_pred EEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeE
Q 003217 406 VRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIV 481 (838)
Q Consensus 406 v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtI 481 (838)
.+|...|.++.|.|+.. +++||.|.|||+||+ +|.+++.|.||..+|.+|+ ++|++|++|+.||.|
T Consensus 532 ----------aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 532 ----------AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLI 601 (707)
T ss_pred ----------cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence 34445566778888876 899999999999999 8999999999999999985 579999999999999
Q ss_pred EEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCC
Q 003217 482 QVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 482 rlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
+|||+. |+++..+.+|++.|.+|.+ ||..|+++|.|++|++||+.....
T Consensus 602 ~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 602 KIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred EEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 999997 7899999999999999985 899999999999999999865433
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-28 Score=243.21 Aligned_cols=261 Identities=20% Similarity=0.262 Sum_probs=195.1
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~ 227 (838)
+.|.++-+|++..-... .| .+-..|++ | .--|..+++++||.+..|||.|+++|+||++++
T Consensus 35 srDk~ii~W~L~~dd~~-----------~G-~~~r~~~G--H-sH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g---- 95 (315)
T KOG0279|consen 35 SRDKTIIVWKLTSDDIK-----------YG-VPVRRLTG--H-SHFVSDVVLSSDGNFALSASWDGTLRLWDLATG---- 95 (315)
T ss_pred ccceEEEEEEeccCccc-----------cC-ceeeeeec--c-ceEecceEEccCCceEEeccccceEEEEEecCC----
Confidence 56999999999532110 00 00111333 2 447889999999999999999999999999998
Q ss_pred CCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccce
Q 003217 228 DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF 306 (838)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~ 306 (838)
+..+.|.||+.-|.+++|++|.+ ++|||.|+||++|++-+. +.++...+.
T Consensus 96 ----~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~------------------------ 146 (315)
T KOG0279|consen 96 ----ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDS------------------------ 146 (315)
T ss_pred ----cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCC------------------------
Confidence 67888999999999999999986 999999999999998542 223222110
Q ss_pred eeeecCCeEEEEEcCC--CCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCC
Q 003217 307 SSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (838)
Q Consensus 307 ~~~~s~~v~~las~~~--~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~ 383 (838)
...-|.|+.++|. ...|++++ |+++++||+++.++...
T Consensus 147 ---~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~------------------------------------ 187 (315)
T KOG0279|consen 147 ---HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT------------------------------------ 187 (315)
T ss_pred ---CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc------------------------------------
Confidence 0234677788776 56788887 68999999987665333
Q ss_pred cceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCcc
Q 003217 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFA 461 (838)
Q Consensus 384 ~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~ 461 (838)
+.+|.+.+.++++||||. +++|+.||.+.+||+ ++++++++ .|...
T Consensus 188 -------------------------------~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~ 235 (315)
T KOG0279|consen 188 -------------------------------FIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDI 235 (315)
T ss_pred -------------------------------cccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCe
Confidence 334556677899999998 589999999999999 79998887 57889
Q ss_pred EEEEEEcCC-EEEEEeeCCeEEEEeCCC-ccccccc----cc---ccCEEE--EEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 462 VQCLCTFGS-QIWVGYMNGIVQVLDLEG-NLLGGWV----AH---SSPVIK--MAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 462 V~sls~dG~-~LasGs~DgtIrlWD~~g-~~i~~l~----gH---~~~V~s--la~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
|.++++..+ +...+..+..|+|||++. .++..++ |. .+.+.| +++ ||+.|++|-+|+.||+|.+..
T Consensus 236 v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred EeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 999999765 444445577899999984 4444443 22 123444 454 799999999999999998753
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=241.26 Aligned_cols=258 Identities=16% Similarity=0.220 Sum_probs=199.8
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD 226 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~ 226 (838)
|.|.+||+|...++.+.+. +.+ .+-|..|.+.|+++.||.|+. ..||++|+.++.+
T Consensus 17 ~YDhTIRfWqa~tG~C~rT---------------------iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np- 73 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRT---------------------IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP- 73 (311)
T ss_pred cCcceeeeeehhcCeEEEE---------------------EecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-
Confidence 6799999999988665431 112 667999999999999999887 4799999998742
Q ss_pred CCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccc
Q 003217 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (838)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 305 (838)
..+.++.+|++.|++|.|-.||+ ++|||+||++||||+....+...+.
T Consensus 74 -----~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-------------------------- 122 (311)
T KOG0315|consen 74 -----NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-------------------------- 122 (311)
T ss_pred -----CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc--------------------------
Confidence 46889999999999999999999 7999999999999996632211110
Q ss_pred eeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCc
Q 003217 306 FSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDK 384 (838)
Q Consensus 306 ~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~ 384 (838)
..+.|..+...+....+.++. ++.|++||+.+..+...+-+.
T Consensus 123 ----~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe--------------------------------- 165 (311)
T KOG0315|consen 123 ----HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE--------------------------------- 165 (311)
T ss_pred ----CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC---------------------------------
Confidence 134566677766666666665 578999999877664333211
Q ss_pred ceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CC------CeeeEee
Q 003217 385 AQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG------NRLQDFQ 456 (838)
Q Consensus 385 ~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g------~~l~tl~ 456 (838)
....|.++.+.+||. ++.+..-|++.+|++ ++ +.+..|+
T Consensus 166 ---------------------------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ 212 (311)
T KOG0315|consen 166 ---------------------------------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ 212 (311)
T ss_pred ---------------------------------CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee
Confidence 111234567778888 455556789999998 43 3556678
Q ss_pred cCCccEEEE--EEcCCEEEEEeeCCeEEEEeCCC--cccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCC
Q 003217 457 YLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLEG--NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 457 ~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~g--~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~ 529 (838)
.|...|+.. ++|+++||++++|.+++||+.++ ++-.++++|..+||.-++ ||+||+|||.|+++|+|++....
T Consensus 213 ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 213 AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred cccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 899988854 77999999999999999999985 567789999999998775 89999999999999999987654
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-28 Score=269.76 Aligned_cols=373 Identities=19% Similarity=0.248 Sum_probs=245.2
Q ss_pred EEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003217 137 TIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRI 215 (838)
Q Consensus 137 ~l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtI 215 (838)
.|.+++..|+. +...-+|+|++.++..... .+. .| .+||.-++|+|.|.+|++|+.||.+
T Consensus 69 ~l~~d~~~L~~a~rs~llrv~~L~tgk~irs-----------------wKa-~H-e~Pvi~ma~~~~g~LlAtggaD~~v 129 (775)
T KOG0319|consen 69 ALTPDEEVLVTASRSQLLRVWSLPTGKLIRS-----------------WKA-IH-EAPVITMAFDPTGTLLATGGADGRV 129 (775)
T ss_pred eecCCccEEEEeeccceEEEEEcccchHhHh-----------------Hhh-cc-CCCeEEEEEcCCCceEEeccccceE
Confidence 34455556665 4566899999988654421 111 34 8899999999999999999999999
Q ss_pred EEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC---EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEee
Q 003217 216 MCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (838)
Q Consensus 216 rvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~---L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (838)
+|||+..+ .+...|+||.+.|.++.|.|+-. |++|..|++||+||+.+...++.
T Consensus 130 ~VWdi~~~--------~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~--------------- 186 (775)
T KOG0319|consen 130 KVWDIKNG--------YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLH--------------- 186 (775)
T ss_pred EEEEeeCC--------EEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHH---------------
Confidence 99999987 67899999999999999999864 68999999999999975332110
Q ss_pred ceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeeccc---------
Q 003217 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSL--------- 362 (838)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~--------- 362 (838)
.+..| .+.++.++++.++..+.+++ |+.+.|||+.+.+.++++....+++..+-+..
T Consensus 187 ---~~~~H----------~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~ 253 (775)
T KOG0319|consen 187 ---TMILH----------KSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYI 253 (775)
T ss_pred ---HHHhh----------hhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEE
Confidence 11122 45677888877777666655 67888999977776666542222111000000
Q ss_pred -------C-----------------c----------------------cc---ccc-cce--------------------
Q 003217 363 -------L-----------------P----------------------DF---AME-DEF-------------------- 372 (838)
Q Consensus 363 -------~-----------------~----------------------~~---~~~-~~~-------------------- 372 (838)
. . ++ .++ ++.
T Consensus 254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG 333 (775)
T KOG0319|consen 254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG 333 (775)
T ss_pred EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence 0 0 00 000 000
Q ss_pred ----eeEEEecCCCCc-----------------ceeeeeEeecCcceeeecCCcEEEEec----------cCccccCCCc
Q 003217 373 ----KTKIVTSSKKDK-----------------AQSSFGFFQRSRNAIMGAADAVRRVAA----------KGGFGDDNRR 421 (838)
Q Consensus 373 ----~~~~~s~~~~~~-----------------~~~s~~~~~~~~~~~~g~~~~v~~v~~----------~g~~~~~~~~ 421 (838)
.+.+.+++..-+ .+-++..+..+....+++.|...++|- .+...+|...
T Consensus 334 ~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s 413 (775)
T KOG0319|consen 334 PEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS 413 (775)
T ss_pred CccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccc
Confidence 001111110000 000111112222334444444333331 1223458889
Q ss_pred eEEEEEcCCCc--EEEEECCCeEEEEcCCC----------CeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 422 TEALTTSIDGM--IWTGGANGLLLQWDPNG----------NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 422 v~ala~S~dg~--l~Sgs~DgtIrlWD~~g----------~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
|.+|+++..+- ++++|.|+|+|+|++.. ++..+...|...|+||+. ..+.||+||.|.+.+||+++
T Consensus 414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le 493 (775)
T KOG0319|consen 414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE 493 (775)
T ss_pred cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc
Confidence 99999977764 79999999999999833 122234469999999865 56799999999999999998
Q ss_pred -CcccccccccccCEEEEEeC--CCEEEEEcCCCCeeeeecCCCCCCchhh-------hhhhhccccccccccceeeEEE
Q 003217 488 -GNLLGGWVAHSSPVIKMAVG--AGYIFTLANHGGIRGWNVTSPGPLDSIL-------CKELAGKEFLYTRMENLKILAG 557 (838)
Q Consensus 488 -g~~i~~l~gH~~~V~sla~d--g~~l~S~S~DgtIrlWdl~s~~~~d~~~-------~~~l~~r~~~y~~~~~~~i~~~ 557 (838)
.+++.+|.||.-.|++|.+. .+.++|+|.|+|||+|.+.++.++..+- +.+|..+.....+-+. .=.+-
T Consensus 494 ~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~a-dGliK 572 (775)
T KOG0319|consen 494 QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGA-DGLIK 572 (775)
T ss_pred CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccC-CCcEE
Confidence 67899999999999999975 4589999999999999999887765433 3333333332221111 23355
Q ss_pred EEEeCCCC
Q 003217 558 TWNVGQGR 565 (838)
Q Consensus 558 twNv~~~~ 565 (838)
-||+..+.
T Consensus 573 lWnikt~e 580 (775)
T KOG0319|consen 573 LWNIKTNE 580 (775)
T ss_pred EEeccchh
Confidence 69997553
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-29 Score=261.45 Aligned_cols=256 Identities=15% Similarity=0.164 Sum_probs=210.2
Q ss_pred CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEE
Q 003217 142 EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGVVWSGHRDGRIMCW 218 (838)
Q Consensus 142 ~~~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d--g~~LaSGs~DGtIrvW 218 (838)
++.|.++ -+|.++||+..+.... ..|++ | ++.|.++.|.|. +..||||+.||++|+|
T Consensus 187 s~~laT~swsG~~kvW~~~~~~~~-----------------~~l~g--H-~~~v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 187 SKHLATGSWSGLVKVWSVPQCNLL-----------------QTLRG--H-TSRVGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred CCeEEEeecCCceeEeecCCccee-----------------EEEec--c-ccceeeEEEccCCCccceeeeccCCceeee
Confidence 4466654 4899999998765221 12433 3 779999999997 5799999999999999
Q ss_pred ECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeec
Q 003217 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (838)
Q Consensus 219 d~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 297 (838)
++++. .++..|.||...|..++|.|+|+ |.|+|.|.|-|+||++++...+-.
T Consensus 247 ~~~~e--------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q------------------- 299 (459)
T KOG0272|consen 247 KLSQE--------TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ------------------- 299 (459)
T ss_pred ccCCC--------cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-------------------
Confidence 99986 67888999999999999999999 789999999999999885533211
Q ss_pred ccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEE
Q 003217 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (838)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (838)
.+| +..|..+++.++|..+.+|+ |..-+|||++||.++-.|.+|...+
T Consensus 300 EGH----------s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I--------------------- 348 (459)
T KOG0272|consen 300 EGH----------SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEI--------------------- 348 (459)
T ss_pred ccc----------ccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccce---------------------
Confidence 123 45677889999999999988 5677899999999998888765432
Q ss_pred EecCCCCcceeeeeEeecCcceeeecCCcEEEEecc------CccccCCCceEEEEEcC-CCc-EEEEECCCeEEEEcC-
Q 003217 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP- 447 (838)
Q Consensus 377 ~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~------g~~~~~~~~v~ala~S~-dg~-l~Sgs~DgtIrlWD~- 447 (838)
-++.|+|++-++.+|+.|...++|.. -+...|..-|..|.|+| .|+ |+++|.|++++||..
T Consensus 349 ----------~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 349 ----------LSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred ----------eeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence 23567777888888999998888861 23456888899999998 565 899999999999999
Q ss_pred CCCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEe
Q 003217 448 NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 448 ~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD 485 (838)
+..+++++.||.+.|.++ ++||..|++++.|++||+|.
T Consensus 419 ~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 419 TWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 679999999999999988 56899999999999999995
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-27 Score=265.07 Aligned_cols=240 Identities=19% Similarity=0.294 Sum_probs=188.9
Q ss_pred EEEE-ec-CCCEEEEeCCCCc--cccc--------cccccccCCCCCCCCCCceeeec-CCCCeEEEEEcCCCCEEEEEe
Q 003217 144 QLWA-GG-ENGLRVWNLKELY--DESE--------SDSVSVSKSKGEDGTAPFKESVK-GVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 144 ~l~~-g~-d~~vrvWd~~~~~--~~~~--------~~~~~~~~~~~~~~~~p~~~~~~-g~~~V~~la~s~dg~~LaSGs 210 (838)
.+.+ |. |+.|++|.+.... .... +-+.....+..|+....-+..+- |.+||+.+.|+|+.++|.|+|
T Consensus 391 smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScS 470 (707)
T KOG0263|consen 391 SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCS 470 (707)
T ss_pred chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeecc
Confidence 4555 43 8899999986311 1100 00011112344554444332222 299999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
.|++||+|.+.+- .+....+||..||+.+.|+|.|. ++|||.|+|.|+|..+.....- .
T Consensus 471 ED~svRLWsl~t~--------s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR-i----------- 530 (707)
T KOG0263|consen 471 EDSSVRLWSLDTW--------SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR-I----------- 530 (707)
T ss_pred CCcceeeeecccc--------eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh-h-----------
Confidence 9999999999986 56777899999999999999997 8999999999999986532111 1
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (838)
+.+| -++|.|+.+.|+...+++|+ |.++++||+.+|..++.|.+
T Consensus 531 -------fagh----------lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G------------------ 575 (707)
T KOG0263|consen 531 -------FAGH----------LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG------------------ 575 (707)
T ss_pred -------hccc----------ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC------------------
Confidence 1122 56899999999999999998 68999999999987666543
Q ss_pred ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC
Q 003217 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP 447 (838)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~ 447 (838)
|...|.+|++||+|+ |+||+.||.|++||+
T Consensus 576 -------------------------------------------------H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 576 -------------------------------------------------HKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred -------------------------------------------------CCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 445577899999998 899999999999999
Q ss_pred -CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 448 -NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 448 -~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
+|+.+.++.+|++.|.+|++ ||..|++|+.|.+|+|||+.
T Consensus 607 ~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 78999999999999999865 89999999999999999975
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=233.35 Aligned_cols=245 Identities=18% Similarity=0.209 Sum_probs=197.1
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
++.|..++..+. -++|.++|.|.+|.+|++.... -..-...+.+.||...|+.++.++||+ .+|||+|+++|+||
T Consensus 15 ~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd---~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWD 91 (315)
T KOG0279|consen 15 TDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD---IKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWD 91 (315)
T ss_pred CceEEEEEeecCCCceEEEcccceEEEEEEeccCc---cccCceeeeeeccceEecceEEccCCceEEeccccceEEEEE
Confidence 889999999876 4899999999999999987641 111234677899999999999999999 47999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
+++++....+. +| ..+|.+++++++..+|.+|+ |+||++||+..+... +
T Consensus 92 l~~g~~t~~f~-------------------GH----------~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~-t 141 (315)
T KOG0279|consen 92 LATGESTRRFV-------------------GH----------TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKY-T 141 (315)
T ss_pred ecCCcEEEEEE-------------------ec----------CCceEEEEecCCCceeecCCCcceeeeeeecccEEE-E
Confidence 98865443332 23 66899999999999999998 789999998643321 1
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
...+ .+...|.+|.|
T Consensus 142 ~~~~-----------------------------------------------------------------~~~~WVscvrf 156 (315)
T KOG0279|consen 142 IHED-----------------------------------------------------------------SHREWVSCVRF 156 (315)
T ss_pred EecC-----------------------------------------------------------------CCcCcEEEEEE
Confidence 1000 11345667778
Q ss_pred cCCC---cEEEEECCCeEEEEcCC-CCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCC-CcccccccccccC
Q 003217 428 SIDG---MIWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP 500 (838)
Q Consensus 428 S~dg---~l~Sgs~DgtIrlWD~~-g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~ 500 (838)
+|.. .|+++|.|++||+||+. -+..+++.+|++.|+.+ ++||...++|+.||.+.|||++ ++.+.++ .|...
T Consensus 157 sP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~ 235 (315)
T KOG0279|consen 157 SPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDI 235 (315)
T ss_pred cCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCe
Confidence 7763 48999999999999995 57888899999999977 5699999999999999999997 7888777 67889
Q ss_pred EEEEEeCCC-EEEEEcCCCCeeeeecCCCCCCchh
Q 003217 501 VIKMAVGAG-YIFTLANHGGIRGWNVTSPGPLDSI 534 (838)
Q Consensus 501 V~sla~dg~-~l~S~S~DgtIrlWdl~s~~~~d~~ 534 (838)
|.++++.++ +.+.++++.+|||||+.+...++.+
T Consensus 236 v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATATSIKIWDLESKAVVEEL 270 (315)
T ss_pred EeeEEecCCceeEeeccCCceEEEeccchhhhhhc
Confidence 999999876 5667889999999999887666554
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-25 Score=238.66 Aligned_cols=328 Identities=15% Similarity=0.181 Sum_probs=223.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec---cccccEEEEEEecCCC-EEEeeCCCcEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ---AHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~---gH~~~V~slafs~dG~-L~SgS~DgtIrv 266 (838)
..-|.|+.|+|||.+++|.+.||+|.++|-.+| +....|. +|++.|.+|+++||++ ++|+|.|.++||
T Consensus 190 skFV~~VRysPDG~~Fat~gsDgki~iyDGktg--------e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 190 SKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG--------EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKI 261 (603)
T ss_pred ccceeeEEECCCCCeEEEecCCccEEEEcCCCc--------cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEE
Confidence 668999999999999999999999999999887 5666676 9999999999999997 999999999999
Q ss_pred EECCCcceeeecCC----CceeeeEEEEeeceeecccceec----------cceeeeecCCeEEEEEcCCCCEEEEeC-C
Q 003217 267 WPWEAIEKALSLKP----EERHTAALIVERSYIDLRSHLSV----------NGFSSILTSDIKNLLSDHSRAKVWSAG-F 331 (838)
Q Consensus 267 Wd~~~~~~~~~~~~----~~~~~~~~~~~~s~~~l~~~~~~----------~~~~~~~s~~v~~las~~~~~~V~s~s-~ 331 (838)
||+.+.+...++.. +...+..+.-...++.+...++. ..+..-++..+.+|..++++..+.+++ |
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 99987543322211 12222222222222221111111 111112355688999999999999999 5
Q ss_pred CcEEEEeccCccEEEEE-ecCCceEEeeecccC---ccccccccee----------------------------------
Q 003217 332 LSFALWDARTRELLKVF-NIDGQIENRVDMSLL---PDFAMEDEFK---------------------------------- 373 (838)
Q Consensus 332 ~tI~lWD~~tg~~l~~l-~~~~~~~~~~~~s~~---~~~~~~~~~~---------------------------------- 373 (838)
+.|.-||..+|..-+.. .+|...+.....+.. ...++|+.++
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 78999999888764332 222222122221110 0001111111
Q ss_pred ------eEEEecCCCCc------ceeeeeEeecCcceeeecCCcEEEEec-c-------CccccCCCceEEEEEcCCCc-
Q 003217 374 ------TKIVTSSKKDK------AQSSFGFFQRSRNAIMGAADAVRRVAA-K-------GGFGDDNRRTEALTTSIDGM- 432 (838)
Q Consensus 374 ------~~~~s~~~~~~------~~~s~~~~~~~~~~~~g~~~~v~~v~~-~-------g~~~~~~~~v~ala~S~dg~- 432 (838)
+.+++..++.. ....+++.+.+..+.+|..|+-..+.. . +.+.+|...+.++++|||+.
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY 501 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence 11111111100 012455566667778888887655544 2 23456788899999999998
Q ss_pred EEEEECCCeEEEEcC-CCCe-eeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC--CcccccccccccCEEEEEe
Q 003217 433 IWTGGANGLLLQWDP-NGNR-LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV 506 (838)
Q Consensus 433 l~Sgs~DgtIrlWD~-~g~~-l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~ 506 (838)
|++|...+.|.+||+ +.+. ...+.-|+..|+|++. +..++|+|+.|-+|.||+++ .+.+....+|...|+.|.+
T Consensus 502 la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~w 581 (603)
T KOG0318|consen 502 LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAW 581 (603)
T ss_pred EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEE
Confidence 677778889999999 4433 3445569999999975 56799999999999999987 4567778899999999985
Q ss_pred -CCCEEEEEcCCCCeeeeecC
Q 003217 507 -GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 507 -dg~~l~S~S~DgtIrlWdl~ 526 (838)
|...++|.+.|..||+|++.
T Consensus 582 lde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 582 LDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ecCceEEeccCcceeEEeccc
Confidence 88899999999999999864
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=261.60 Aligned_cols=266 Identities=23% Similarity=0.340 Sum_probs=209.6
Q ss_pred cCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003217 141 TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (838)
Q Consensus 141 ~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd 219 (838)
+++.|.+ +.|+.+++|+...... .. . .. . ..| ...|.+++|+|+++.|++|+.|++||+||
T Consensus 170 ~g~~l~~~~~~~~i~~~~~~~~~~-~~------------~-~~-l--~~h-~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 170 DGRALAAASSDGLIRIWKLEGIKS-NL------------L-RE-L--SGH-TRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred CCCeEEEccCCCcEEEeecccccc-hh------------h-cc-c--ccc-ccceeeeEECCCCcEEEEecCCceEEEee
Confidence 3555555 4799999999854331 00 0 00 0 123 77899999999999999999999999999
Q ss_pred CCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecc
Q 003217 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (838)
Q Consensus 220 ~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 298 (838)
+.... ....+++||...|++++|+|+|+ ++|||.|++|||||+.+++....+.
T Consensus 232 ~~~~~-------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~------------------- 285 (456)
T KOG0266|consen 232 LKDDG-------RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK------------------- 285 (456)
T ss_pred ccCCC-------eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-------------------
Confidence 94431 67789999999999999999997 6899999999999998755433322
Q ss_pred cceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccE--EEEEecCCceEEeeecccCcccccccceeeE
Q 003217 299 SHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL--LKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (838)
Q Consensus 299 ~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~--l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (838)
+| +..+..++++.++..+++++ |+.|++||+.+++. ++.+..+.
T Consensus 286 ~h----------s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~----------------------- 332 (456)
T KOG0266|consen 286 GH----------SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAE----------------------- 332 (456)
T ss_pred cc----------CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCC-----------------------
Confidence 22 55688889999999999988 67899999999984 33322110
Q ss_pred EEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeee
Q 003217 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQ 453 (838)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~ 453 (838)
... .+..+.|+|++. +++++.|+++++||+ .+.+++
T Consensus 333 -----------------------------------------~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~ 370 (456)
T KOG0266|consen 333 -----------------------------------------NSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVG 370 (456)
T ss_pred -----------------------------------------CCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCccee
Confidence 011 355678999987 899999999999999 689999
Q ss_pred EeecCCccEEEE-----EEcCCEEEEEeeCCeEEEEeCC-Cccccccccc-ccCEEEEEe--CCCEEEEEc--CCCCeee
Q 003217 454 DFQYLPFAVQCL-----CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH-SSPVIKMAV--GAGYIFTLA--NHGGIRG 522 (838)
Q Consensus 454 tl~~H~~~V~sl-----s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH-~~~V~sla~--dg~~l~S~S--~DgtIrl 522 (838)
++.+|...+.|+ ...|+++++|+.|+.|++||.. +..+..+.+| ...|..+.. ...++++++ .|+.|++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~ 450 (456)
T KOG0266|consen 371 TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRL 450 (456)
T ss_pred eecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEE
Confidence 999999876665 2368899999999999999998 6789999999 888887774 567888888 8999999
Q ss_pred eec
Q 003217 523 WNV 525 (838)
Q Consensus 523 Wdl 525 (838)
|..
T Consensus 451 w~~ 453 (456)
T KOG0266|consen 451 WKY 453 (456)
T ss_pred ecC
Confidence 974
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=246.79 Aligned_cols=296 Identities=18% Similarity=0.272 Sum_probs=210.2
Q ss_pred CCEEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecC---CCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003217 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG---VSSVMCMVGDEASGVVWSGHRDGRIM 216 (838)
Q Consensus 142 ~~~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g---~~~V~~la~s~dg~~LaSGs~DGtIr 216 (838)
...+++ +.|.+.|+|++..-... ++. -+ +-..++++.++. ..-|+||+|+.+|..||+|+.||.+|
T Consensus 190 ~~~llasg~~~s~ari~~l~e~~~~-~~~--q~------~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~r 260 (524)
T KOG0273|consen 190 RDGLLASGSGDSTARIWNLLENSNI-GST--QL------VLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEAR 260 (524)
T ss_pred hhhhhhccCCccceeeeeehhhccc-cch--hh------hhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEE
Confidence 444665 34789999999641111 100 00 011122221110 45799999999999999999999999
Q ss_pred EEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeecee
Q 003217 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (838)
Q Consensus 217 vWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 295 (838)
+|+..+ ..+.+|--|++||.+|.++..|. |+||+-|+|+-+||..+++....+..++
T Consensus 261 iw~~~G---------~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s------------- 318 (524)
T KOG0273|consen 261 IWNKDG---------NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHS------------- 318 (524)
T ss_pred EEecCc---------hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeecc-------------
Confidence 999987 46778889999999999999998 8999999999999996654322111100
Q ss_pred ecccceeccceeeeecCCeEEEEEcCCCCEEEE-eCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceee
Q 003217 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS-AGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (838)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s-~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (838)
.+.-+|... +...+++ +.++.|+++.+.-..+.
T Consensus 319 -------------~~~lDVdW~----~~~~F~ts~td~~i~V~kv~~~~P~----------------------------- 352 (524)
T KOG0273|consen 319 -------------APALDVDWQ----SNDEFATSSTDGCIHVCKVGEDRPV----------------------------- 352 (524)
T ss_pred -------------CCccceEEe----cCceEeecCCCceEEEEEecCCCcc-----------------------------
Confidence 001122221 1112222 22344544433222211
Q ss_pred EEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCee
Q 003217 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRL 452 (838)
Q Consensus 375 ~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l 452 (838)
.+|.+|...|.++.+.|-|. |+|+|.|+|+|||.. .+.+.
T Consensus 353 --------------------------------------~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 353 --------------------------------------KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV 394 (524)
T ss_pred --------------------------------------eeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence 23556777888899999888 689999999999998 78899
Q ss_pred eEeecCCccEEEEEE-----------cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCC
Q 003217 453 QDFQYLPFAVQCLCT-----------FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHG 518 (838)
Q Consensus 453 ~tl~~H~~~V~sls~-----------dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~Dg 518 (838)
..|.+|+..|..+.. .+..|++++.|++|++||++ |.++.+|..|+.+|++|++ +|.|++||+.||
T Consensus 395 ~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg 474 (524)
T KOG0273|consen 395 HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG 474 (524)
T ss_pred hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCC
Confidence 999999999888742 24589999999999999997 8999999999999999985 699999999999
Q ss_pred CeeeeecCCCCCCchhhhhhhhccccccccccceeeEEEEEEeCCCCC
Q 003217 519 GIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRA 566 (838)
Q Consensus 519 tIrlWdl~s~~~~d~~~~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~ 566 (838)
.|.+|+.+.+..... |...+. ||..-||.++.+.
T Consensus 475 ~V~iws~~~~~l~~s------------~~~~~~--Ifel~Wn~~G~kl 508 (524)
T KOG0273|consen 475 CVHIWSTKTGKLVKS------------YQGTGG--IFELCWNAAGDKL 508 (524)
T ss_pred eeEeccccchheeEe------------ecCCCe--EEEEEEcCCCCEE
Confidence 999999876433222 222233 8999999987544
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=237.31 Aligned_cols=265 Identities=17% Similarity=0.192 Sum_probs=204.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|.|++++|.+++++||+.|++|++||+++| +...++.||-..|..|++|+--- |+|+++|+.||.||+
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg--------~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATG--------QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccC--------eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 789999999999999999999999999999998 78889999999999999998654 899999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
+..+-...++ ++. +.|.+|...+.-..|++++ |.++++||++|+..+.+|
T Consensus 223 e~nkvIR~Yh---------------------GHl--------S~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l 273 (460)
T KOG0285|consen 223 EYNKVIRHYH---------------------GHL--------SGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL 273 (460)
T ss_pred hhhhhHHHhc---------------------ccc--------ceeEEEeccccceeEEecCCcceEEEeeecccceEEEe
Confidence 7644222221 222 2466777777677777776 679999999999999999
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--c----CccccCCCce
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNRRT 422 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~~v 422 (838)
.+|...+.++ .+-+...++++|+.|+..++|. . -++..|...|
T Consensus 274 ~GH~~~V~~V-------------------------------~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksv 322 (460)
T KOG0285|consen 274 SGHTNPVASV-------------------------------MCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSV 322 (460)
T ss_pred cCCCCcceeE-------------------------------EeecCCCceEEecCCceEEEeeeccCceeEeeeccccee
Confidence 8876543222 2233344667777777777775 1 2455677888
Q ss_pred EEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc-CCEEEEEeeCCeEEEEeCC-Cc---cccccc
Q 003217 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF-GSQIWVGYMNGIVQVLDLE-GN---LLGGWV 495 (838)
Q Consensus 423 ~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d-G~~LasGs~DgtIrlWD~~-g~---~i~~l~ 495 (838)
.+++..|... ++|+|.|. |+.|++ +|+.++.+.+|+.-|++++.. ...+++|+..|+|..||-+ |- ..++..
T Consensus 323 ral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~v 401 (460)
T KOG0285|consen 323 RALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIV 401 (460)
T ss_pred eEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccc
Confidence 9999888766 68888886 999999 899888899999999999874 4588899999999999976 42 122121
Q ss_pred --c---cccCEEEEEeC--CCEEEEEcCCCCeeeee
Q 003217 496 --A---HSSPVIKMAVG--AGYIFTLANHGGIRGWN 524 (838)
Q Consensus 496 --g---H~~~V~sla~d--g~~l~S~S~DgtIrlWd 524 (838)
| ....|.+-.+| |..|+||..|++|++|.
T Consensus 402 qpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 402 QPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred cCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 1 12345555554 67899999999999997
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=264.19 Aligned_cols=268 Identities=21% Similarity=0.282 Sum_probs=216.9
Q ss_pred CCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003217 142 EEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (838)
Q Consensus 142 ~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~ 220 (838)
.+.+..++ |.+|++||..+.+...+ ++. +| .+.|.++++...+..|+|||.|.++|+||.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~----------------~l~--GH-~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILT----------------RLV--GH-FGGVWGLAFPSGGDKLVSGSTDKTERVWDC 278 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEe----------------ecc--CC-CCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence 44555554 77999999987664321 121 33 889999999877899999999999999999
Q ss_pred CCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccc
Q 003217 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300 (838)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~ 300 (838)
.+| ++..++.||.+.|.+|...+ ..+++||.|.+||||+++++.....+ ++|
T Consensus 279 ~sg--------~C~~~l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~~~l~l~-------------------~~h 330 (537)
T KOG0274|consen 279 STG--------ECTHSLQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNGACLNLL-------------------RGH 330 (537)
T ss_pred CCC--------cEEEEecCCCceEEEEEccC-ceEeeccCCceEEEEeccCcceEEEe-------------------ccc
Confidence 998 78899999999999998755 34789999999999999865432221 112
Q ss_pred eeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEec
Q 003217 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTS 379 (838)
Q Consensus 301 ~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~ 379 (838)
...|+++..+ +..+++++ +++|++||+.+++++++|.+|..
T Consensus 331 ----------~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~-------------------------- 372 (537)
T KOG0274|consen 331 ----------TGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG-------------------------- 372 (537)
T ss_pred ----------cccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcc--------------------------
Confidence 4567777775 66777776 57899999999999988866533
Q ss_pred CCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CC-CeeeEeec
Q 003217 380 SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NG-NRLQDFQY 457 (838)
Q Consensus 380 ~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g-~~l~tl~~ 457 (838)
+|.++.+.....+++|+.|++|++||+ +. +|+.++.+
T Consensus 373 -----------------------------------------~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~ 411 (537)
T KOG0274|consen 373 -----------------------------------------RVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQG 411 (537)
T ss_pred -----------------------------------------eEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcC
Confidence 233444444346899999999999999 56 79999999
Q ss_pred CCccEEEEEEcCCEEEEEeeCCeEEEEeCC-Ccccccccc-cccCEEEEEeCCCEEEEEcCCCCeeeeecCCCCCCchhh
Q 003217 458 LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA-HSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSIL 535 (838)
Q Consensus 458 H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~g-H~~~V~sla~dg~~l~S~S~DgtIrlWdl~s~~~~d~~~ 535 (838)
|..-|.++...+++|.+++.|++|++||.+ +++++++.+ |...|..+......+++++.|+++++||+.+..+...++
T Consensus 412 h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~~l~ 491 (537)
T KOG0274|consen 412 HTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIRTLL 491 (537)
T ss_pred CcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhhhhh
Confidence 999999999999999999999999999987 889999999 789999988776789999999999999999877766553
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=223.25 Aligned_cols=265 Identities=17% Similarity=0.219 Sum_probs=197.4
Q ss_pred CCccccCceeEEEEe------------cCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCC
Q 003217 126 LRETQIGCFLRTIVC------------TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSS 193 (838)
Q Consensus 126 ~~~~~~~~~~~~l~~------------~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~ 193 (838)
+|+..+|.|.|+|.. +++.|.++..-.||+||+.+... .+.+.| .++ +..
T Consensus 24 fWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np---------------~Pv~t~--e~h-~kN 85 (311)
T KOG0315|consen 24 FWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNP---------------NPVATF--EGH-TKN 85 (311)
T ss_pred eeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCC---------------CceeEE--ecc-CCc
Confidence 456666777777643 24455556778999999976432 112223 234 789
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCc
Q 003217 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAI 272 (838)
Q Consensus 194 V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~ 272 (838)
|.++.|..+|++++|||.||++||||+... . +...-.|..+|++|+..|+.. |++|..+|.|||||+...
T Consensus 86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~--------~-~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSL--------S-CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred eEEEEEeecCeEEEecCCCceEEEEeccCc--------c-cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 999999999999999999999999999874 2 233345789999999999864 999999999999999654
Q ss_pred ceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecC
Q 003217 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNID 351 (838)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~ 351 (838)
.+...+.++. -..+..+...++|.+++.+.. ++..+|++-+++....|.+
T Consensus 157 ~c~~~liPe~----------------------------~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P- 207 (311)
T KOG0315|consen 157 SCTHELIPED----------------------------DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEP- 207 (311)
T ss_pred ccccccCCCC----------------------------CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceE-
Confidence 3333333322 124667788888988888876 5799999876433211110
Q ss_pred CceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC
Q 003217 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG 431 (838)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg 431 (838)
. ..|..|..-+....+|||+
T Consensus 208 ----------------------------~--------------------------------~k~~ah~~~il~C~lSPd~ 227 (311)
T KOG0315|consen 208 ----------------------------V--------------------------------HKFQAHNGHILRCLLSPDV 227 (311)
T ss_pred ----------------------------h--------------------------------hheecccceEEEEEECCCC
Confidence 0 0133444556667799999
Q ss_pred c-EEEEECCCeEEEEcCCC--CeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEE
Q 003217 432 M-IWTGGANGLLLQWDPNG--NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA 505 (838)
Q Consensus 432 ~-l~Sgs~DgtIrlWD~~g--~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla 505 (838)
+ |+++|.|.+++||+.++ +.-..+++|..+|+..++ ||++|++|+.|+++|+||++ ++.++.+.||.....+++
T Consensus 228 k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 228 KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVA 307 (311)
T ss_pred cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEE
Confidence 8 89999999999999965 455678899999997654 79999999999999999998 889999999998887776
Q ss_pred e
Q 003217 506 V 506 (838)
Q Consensus 506 ~ 506 (838)
.
T Consensus 308 l 308 (311)
T KOG0315|consen 308 L 308 (311)
T ss_pred e
Confidence 4
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=239.25 Aligned_cols=286 Identities=17% Similarity=0.289 Sum_probs=208.9
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEE-ecCCC---EEEeeCCCc
Q 003217 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI-SSYGD---LWSGSEGGG 263 (838)
Q Consensus 188 ~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slaf-s~dG~---L~SgS~Dgt 263 (838)
.| ..+|.++... ++.|.||++||++|+||..+ +.+.+..||+++|.++++ .++.. ++|||.|.|
T Consensus 103 ~h-dDWVSsv~~~--~~~IltgsYDg~~riWd~~G---------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqt 170 (423)
T KOG0313|consen 103 LH-DDWVSSVKGA--SKWILTGSYDGTSRIWDLKG---------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQT 170 (423)
T ss_pred cc-hhhhhhhccc--CceEEEeecCCeeEEEecCC---------ceEEEEecCCcceeeeEEEecCCccceEEEecCCce
Confidence 44 7788888776 69999999999999999987 678889999999997776 34443 899999999
Q ss_pred EEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCc
Q 003217 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTR 342 (838)
Q Consensus 264 IrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg 342 (838)
+++|.++.++..+..... -++| ...|.++...+++.++.++++ .+|++|+..+.
T Consensus 171 l~Lw~~~~~~~~~~~~~~---------------~~GH----------k~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~ 225 (423)
T KOG0313|consen 171 LRLWKWNVGENKVKALKV---------------CRGH----------KRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETD 225 (423)
T ss_pred EEEEEecCchhhhhHHhH---------------hccc----------ccceeEEEecCCCCeEEeecccceeeecccCCC
Confidence 999998664432211100 0122 345777888888999999995 68999994322
Q ss_pred cEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCce
Q 003217 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (838)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (838)
. ...++.. .. ..+ ...++++. .+.... .-++.+|..+|
T Consensus 226 ~-~~~~E~~----------s~-------~rr----k~~~~~~~--------------~~~r~P------~vtl~GHt~~V 263 (423)
T KOG0313|consen 226 E-EDELESS----------SN-------RRR----KKQKREKE--------------GGTRTP------LVTLEGHTEPV 263 (423)
T ss_pred c-ccccccc----------ch-------hhh----hhhhhhhc--------------ccccCc------eEEecccccce
Confidence 1 1111100 00 000 00000000 010001 11366899999
Q ss_pred EEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC---Cc-cccccc
Q 003217 423 EALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE---GN-LLGGWV 495 (838)
Q Consensus 423 ~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~---g~-~i~~l~ 495 (838)
.+|.+++.+.++|+|-|.|||.||+ +|.++.++.+ ....+|++. ..++|++|+.|..|||||+. |. ..++|.
T Consensus 264 s~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~ 342 (423)
T KOG0313|consen 264 SSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLI 342 (423)
T ss_pred eeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeee
Confidence 9999999888999999999999999 7888888876 557888865 45699999999999999986 33 478999
Q ss_pred ccccCEEEEEeC---CCEEEEEcCCCCeeeeecCCCC-CCchhhhhhhhccccccccccceeeEEEEEEeCCCCC
Q 003217 496 AHSSPVIKMAVG---AGYIFTLANHGGIRGWNVTSPG-PLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRA 566 (838)
Q Consensus 496 gH~~~V~sla~d---g~~l~S~S~DgtIrlWdl~s~~-~~d~~~~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~ 566 (838)
||.++|.++.+. ..+++|+|+|+++|+||+++.. |+.++.++ .-||+..+||-+....
T Consensus 343 gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h-------------~DKvl~vdW~~~~~Iv 404 (423)
T KOG0313|consen 343 GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH-------------NDKVLSVDWNEGGLIV 404 (423)
T ss_pred cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-------------CceEEEEeccCCceEE
Confidence 999999999864 4579999999999999999877 88877653 3369999999875433
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=228.50 Aligned_cols=264 Identities=19% Similarity=0.227 Sum_probs=201.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.+.|+++.|+|+|..++||+.|..|-+|++.+.. +....++||+++|..+.|.+|+. |+|+|.|++|+.||+
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEeccccc-------cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 8899999999999999999999999999987642 56677899999999999999998 899999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCC-CEEEEeC-CCcEEEEeccCccEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
+++++..++..+...+.+ +.-..-+ ..|-+++ |+|++|||+++++++++
T Consensus 120 ~tG~~~rk~k~h~~~vNs-----------------------------~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t 170 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNS-----------------------------LDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT 170 (338)
T ss_pred ccceeeehhccccceeee-----------------------------cCccccCCeEEEecCCCceEEEEeecccchhhc
Confidence 998877665543333221 1111112 2455555 47999999999999888
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec----c--CccccCCCc
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA----K--GGFGDDNRR 421 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~----~--g~~~~~~~~ 421 (838)
+.-..+. + .++|.+.+.+++.|.-+....+|. . -.+.+|...
T Consensus 171 ~~~kyql-t-------------------------------Av~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt 218 (338)
T KOG0265|consen 171 FENKYQL-T-------------------------------AVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT 218 (338)
T ss_pred cccceeE-E-------------------------------EEEecccccceeeccccCceeeeccccCcceEEeecccCc
Confidence 7433222 1 123333333444444444444443 1 124567778
Q ss_pred eEEEEEcCCCc-EEEEECCCeEEEEcCC----C-CeeeEeecCCc--cEEEE----EEcCCEEEEEeeCCeEEEEeCCC-
Q 003217 422 TEALTTSIDGM-IWTGGANGLLLQWDPN----G-NRLQDFQYLPF--AVQCL----CTFGSQIWVGYMNGIVQVLDLEG- 488 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs~DgtIrlWD~~----g-~~l~tl~~H~~--~V~sl----s~dG~~LasGs~DgtIrlWD~~g- 488 (838)
|..+..+++|. +++-+.|.++++||+. + +|++.+.+|.. .++.| +++++.+.+|+.|+.+.+||..+
T Consensus 219 It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 219 ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence 88899999987 8999999999999983 3 67999998654 34433 46788999999999999999985
Q ss_pred cccccccccccCEEEEEeCC--CEEEEEcCCCCeee
Q 003217 489 NLLGGWVAHSSPVIKMAVGA--GYIFTLANHGGIRG 522 (838)
Q Consensus 489 ~~i~~l~gH~~~V~sla~dg--~~l~S~S~DgtIrl 522 (838)
.++..|.||.+.|+++.+.+ ..|.|++.|++|.+
T Consensus 299 ~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 299 RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 78999999999999999765 47899999999875
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=234.04 Aligned_cols=288 Identities=18% Similarity=0.239 Sum_probs=199.6
Q ss_pred ceeEEEEecCCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEc---CCCCEEEE
Q 003217 133 CFLRTIVCTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGD---EASGVVWS 208 (838)
Q Consensus 133 ~~~~~l~~~~~~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s---~dg~~LaS 208 (838)
..+.++....+.+++| .|+.+|+||.+- ... +....| +++|.++++- +....++|
T Consensus 106 DWVSsv~~~~~~IltgsYDg~~riWd~~G-k~~-------------------~~~~Gh-t~~ik~v~~v~~n~~~~~fvs 164 (423)
T KOG0313|consen 106 DWVSSVKGASKWILTGSYDGTSRIWDLKG-KSI-------------------KTIVGH-TGPIKSVAWVIKNSSSCLFVS 164 (423)
T ss_pred hhhhhhcccCceEEEeecCCeeEEEecCC-ceE-------------------EEEecC-CcceeeeEEEecCCccceEEE
Confidence 3444555556677765 599999999852 111 222334 7788866653 33356999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcc-eeeecCCC-c---
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE-KALSLKPE-E--- 282 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~-~~~~~~~~-~--- 282 (838)
||.|.++++|..+.+. +..+....-+||.++|-+|...++|. +.|||.|.+|++|+.++.+ ..+.-... .
T Consensus 165 as~Dqtl~Lw~~~~~~----~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~ 240 (423)
T KOG0313|consen 165 ASMDQTLRLWKWNVGE----NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKK 240 (423)
T ss_pred ecCCceEEEEEecCch----hhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhh
Confidence 9999999999998762 33333344469999999999999997 7899999999999943311 00100000 0
Q ss_pred -eeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeec
Q 003217 283 -RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM 360 (838)
Q Consensus 283 -~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (838)
.........-..+.+.+| ...|..+..++ ...+.+++ |.||+.||+.+|.+..++....
T Consensus 241 ~~~~~~~~~r~P~vtl~GH----------t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-------- 301 (423)
T KOG0313|consen 241 QKREKEGGTRTPLVTLEGH----------TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-------- 301 (423)
T ss_pred hhhhhcccccCceEEeccc----------ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc--------
Confidence 000000000113344444 55677777765 55677777 5799999999988755443211
Q ss_pred ccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECC
Q 003217 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGAN 439 (838)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~D 439 (838)
...++..++... |++||.|
T Consensus 302 ------------------------------------------------------------sl~~i~~~~~~~Ll~~gssd 321 (423)
T KOG0313|consen 302 ------------------------------------------------------------SLNCISYSPLSKLLASGSSD 321 (423)
T ss_pred ------------------------------------------------------------ceeEeecccccceeeecCCC
Confidence 112333444333 7899999
Q ss_pred CeEEEEcC-CC--C-eeeEeecCCccEEEEEEc---CCEEEEEeeCCeEEEEeCC-Cc-ccccccccccCEEEEEe-CCC
Q 003217 440 GLLLQWDP-NG--N-RLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE-GN-LLGGWVAHSSPVIKMAV-GAG 509 (838)
Q Consensus 440 gtIrlWD~-~g--~-~l~tl~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~-g~-~i~~l~gH~~~V~sla~-dg~ 509 (838)
..||+||+ ++ . ..++|.+|+++|.++... -.++++|+.|++++|||+. .+ .+..+.+|.+.|.++.+ .+.
T Consensus 322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~ 401 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG 401 (423)
T ss_pred CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCc
Confidence 99999999 43 3 568899999999999653 3489999999999999987 44 79999999999999997 677
Q ss_pred EEEEEcCCCCeeeee
Q 003217 510 YIFTLANHGGIRGWN 524 (838)
Q Consensus 510 ~l~S~S~DgtIrlWd 524 (838)
+++|||.|++||+..
T Consensus 402 ~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 402 LIVSGGADNKLRIFK 416 (423)
T ss_pred eEEeccCcceEEEec
Confidence 999999999999976
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=253.91 Aligned_cols=238 Identities=21% Similarity=0.336 Sum_probs=197.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..+|.|+.|+++|+.+++++.|++|++|+..+.. . .....+.+|...|++++|+|||+ +++|+.|++|||||+
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~-----~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK-----S-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeeccccc-----c-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 5689999999999999999999999999996651 0 25566789999999999999997 799999999999999
Q ss_pred CCc-ceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 270 EAI-EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 270 ~~~-~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
... ....+ +++| ...+.++++.+.+..|.+|+ |.+|+|||+++++++++
T Consensus 233 ~~~~~~~~~-------------------l~gH----------~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 233 KDDGRNLKT-------------------LKGH----------STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred cCCCeEEEE-------------------ecCC----------CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe
Confidence 332 22121 2334 56788999999888999988 57999999999998877
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
|.+|. ..|.+++|
T Consensus 284 l~~hs-------------------------------------------------------------------~~is~~~f 296 (456)
T KOG0266|consen 284 LKGHS-------------------------------------------------------------------DGISGLAF 296 (456)
T ss_pred eeccC-------------------------------------------------------------------CceEEEEE
Confidence 75443 23456788
Q ss_pred cCCCc-EEEEECCCeEEEEcC-CCC--eeeEeecCCcc--EEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccccccccc
Q 003217 428 SIDGM-IWTGGANGLLLQWDP-NGN--RLQDFQYLPFA--VQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (838)
Q Consensus 428 S~dg~-l~Sgs~DgtIrlWD~-~g~--~l~tl~~H~~~--V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~ 498 (838)
++||. |++++.|++|++||+ ++. |++++.++... ++++.+ +|++|++++.|+++++||+. +.+...+.+|.
T Consensus 297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~ 376 (456)
T KOG0266|consen 297 SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHS 376 (456)
T ss_pred CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccC
Confidence 88887 788999999999999 777 67888887766 777754 78999999999999999998 78999999999
Q ss_pred cCEEEEE-----eCCCEEEEEcCCCCeeeeecCCCCC
Q 003217 499 SPVIKMA-----VGAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 499 ~~V~sla-----~dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
..+.++. .++.+++|++.|+.|.+|++.+...
T Consensus 377 ~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~ 413 (456)
T KOG0266|consen 377 NLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI 413 (456)
T ss_pred CcceeEecccccCCCCeEEEEeCCceEEEEeCCccch
Confidence 9766653 3788999999999999999877433
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-24 Score=240.48 Aligned_cols=270 Identities=16% Similarity=0.274 Sum_probs=201.8
Q ss_pred eeEEEEe--cCCEEEEecC--CCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE
Q 003217 134 FLRTIVC--TEEQLWAGGE--NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (838)
Q Consensus 134 ~~~~l~~--~~~~l~~g~d--~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG 209 (838)
.+.+++. +++.|..|.- +.+-||+...-. .-+++..| ...+.|++++|||++||||
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-------------------YVlKQQgH-~~~i~~l~YSpDgq~iaTG 368 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-------------------YVLKQQGH-SDRITSLAYSPDGQLIATG 368 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeeccc-------------------eeeecccc-ccceeeEEECCCCcEEEec
Confidence 3445544 4666666553 589999986421 12445555 7799999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEE
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~ 288 (838)
+.||+|||||...| -+..+|..|+..|+++.|+..|+ |+|.|-|||||.||+....+-.+++...
T Consensus 369 ~eDgKVKvWn~~Sg--------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~------ 434 (893)
T KOG0291|consen 369 AEDGKVKVWNTQSG--------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE------ 434 (893)
T ss_pred cCCCcEEEEeccCc--------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC------
Confidence 99999999999988 57899999999999999999998 7899999999999996533222221100
Q ss_pred EEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCC--cEEEEeccCccEEEEEecCCceEEeeecccCccc
Q 003217 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL--SFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~--tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (838)
.....|++.++.|..|.+|+-. .|.+|+++||+++.+|.+|.
T Consensus 435 ----------------------p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE-------------- 478 (893)
T KOG0291|consen 435 ----------------------PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE-------------- 478 (893)
T ss_pred ----------------------ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCC--------------
Confidence 1134678888888877776633 69999999999987766553
Q ss_pred ccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEE
Q 003217 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQW 445 (838)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlW 445 (838)
+.|..++|+|+|. |+|||-|+|||+|
T Consensus 479 -----------------------------------------------------gPVs~l~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 479 -----------------------------------------------------GPVSGLSFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred -----------------------------------------------------CcceeeEEccccCeEEeccccceEEEE
Confidence 2344567888887 7999999999999
Q ss_pred cC-CC-CeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC-Cccc----------------cccc----ccccC
Q 003217 446 DP-NG-NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLL----------------GGWV----AHSSP 500 (838)
Q Consensus 446 D~-~g-~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i----------------~~l~----gH~~~ 500 (838)
|+ .. ....++. +...|+.++ |||+.|++++.||.|.+||.+ +... ..++ +-...
T Consensus 506 ~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~ 584 (893)
T KOG0291|consen 506 DIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKT 584 (893)
T ss_pred EeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCc
Confidence 99 43 3445554 566777775 579999999999999999964 2211 1111 22344
Q ss_pred EEEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 501 VIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 501 V~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
.++|. +||..+++||..+.|+++++..
T Consensus 585 Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 585 FTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred eEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 55554 6999999999999999999754
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-25 Score=255.66 Aligned_cols=235 Identities=21% Similarity=0.339 Sum_probs=193.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEE-eccccccEEEEEEecCC-CEEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS-WQAHRGPVLSLCISSYG-DLWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~-l~gH~~~V~slafs~dG-~L~SgS~DgtIrvWd 268 (838)
...+.|..+. .+.+.+|+.|.+|++|+..++ ..+.. +.||.+.|.+++|..-+ .|+|||.|.|+||||
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~--------~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG--------YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD 277 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecccc--------eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence 5578999998 578999999999999999987 56666 99999999999998733 489999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
..++++...+..+ .+.+.++.. .+..+.+|+ |.+|++|++.++.++++
T Consensus 278 ~~sg~C~~~l~gh-----------------------------~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l 326 (537)
T KOG0274|consen 278 CSTGECTHSLQGH-----------------------------TSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNL 326 (537)
T ss_pred cCCCcEEEEecCC-----------------------------CceEEEEEc--cCceEeeccCCceEEEEeccCcceEEE
Confidence 9888776554322 223444433 234445544 68999999999999888
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
+.+|... |.++..
T Consensus 327 ~~~h~~~-------------------------------------------------------------------V~~v~~ 339 (537)
T KOG0274|consen 327 LRGHTGP-------------------------------------------------------------------VNCVQL 339 (537)
T ss_pred ecccccc-------------------------------------------------------------------EEEEEe
Confidence 7654321 223333
Q ss_pred cCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcC-CEEEEEeeCCeEEEEeCCC--cccccccccccCEEE
Q 003217 428 SIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFG-SQIWVGYMNGIVQVLDLEG--NLLGGWVAHSSPVIK 503 (838)
Q Consensus 428 S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG-~~LasGs~DgtIrlWD~~g--~~i~~l~gH~~~V~s 503 (838)
. ++.+++|+.|++|++||+ +++|++++++|+.+|+++.+++ .++++|+.|++|++||+++ +|+.++.+|.+.|.+
T Consensus 340 ~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~ 418 (537)
T KOG0274|consen 340 D-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSS 418 (537)
T ss_pred c-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccc
Confidence 3 456899999999999999 8999999999999999999999 9999999999999999984 599999999999999
Q ss_pred EEeCCCEEEEEcCCCCeeeeecCCCCCCchh
Q 003217 504 MAVGAGYIFTLANHGGIRGWNVTSPGPLDSI 534 (838)
Q Consensus 504 la~dg~~l~S~S~DgtIrlWdl~s~~~~d~~ 534 (838)
+...++.|+|++.|++||+||...+..+..+
T Consensus 419 l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 419 LLLRDNFLVSSSADGTIKLWDAEEGECLRTL 449 (537)
T ss_pred cccccceeEeccccccEEEeecccCceeeee
Confidence 9999999999999999999998877665544
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=257.86 Aligned_cols=275 Identities=16% Similarity=0.144 Sum_probs=195.7
Q ss_pred ceeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC-CCCEEEE
Q 003217 133 CFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWS 208 (838)
Q Consensus 133 ~~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~-dg~~LaS 208 (838)
..+.+++.+ ++.+.+ |.|+.|+|||+........ ....|.....+ ...|.+++|++ ++.+|+|
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~------------~~~~~~~~~~~-~~~v~~l~~~~~~~~~las 550 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR------------DIHYPVVELAS-RSKLSGICWNSYIKSQVAS 550 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc------------ccccceEEecc-cCceeeEEeccCCCCEEEE
Confidence 346666665 334544 6699999999864211110 11112222122 56799999987 4789999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec-CCC-EEEeeCCCcEEEEECCCcceeeecCCCceeee
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~ 286 (838)
|+.||+|++||+.++ +.+..+.+|.+.|++|+|+| ++. |+|||.|++|++||+.++.....+..
T Consensus 551 ~~~Dg~v~lWd~~~~--------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~------ 616 (793)
T PLN00181 551 SNFEGVVQVWDVARS--------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT------ 616 (793)
T ss_pred EeCCCeEEEEECCCC--------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec------
Confidence 999999999999986 66778899999999999997 676 78999999999999976432211100
Q ss_pred EEEEeeceeecccceeccceeeeecCCeEEEEE-cCCCCEEEEeC-CCcEEEEeccCccE-EEEEecCCceEEeeecccC
Q 003217 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS-DHSRAKVWSAG-FLSFALWDARTREL-LKVFNIDGQIENRVDMSLL 363 (838)
Q Consensus 287 ~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las-~~~~~~V~s~s-~~tI~lWD~~tg~~-l~~l~~~~~~~~~~~~s~~ 363 (838)
...+.++.+ .+++..+++++ +++|++||++++.. +.++.
T Consensus 617 ------------------------~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-------------- 658 (793)
T PLN00181 617 ------------------------KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-------------- 658 (793)
T ss_pred ------------------------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec--------------
Confidence 123445555 34566777776 67899999976531 11111
Q ss_pred cccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEE
Q 003217 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLL 443 (838)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIr 443 (838)
.|...|.++.|.++..+++++.|++|+
T Consensus 659 -----------------------------------------------------~h~~~V~~v~f~~~~~lvs~s~D~~ik 685 (793)
T PLN00181 659 -----------------------------------------------------GHSKTVSYVRFVDSSTLVSSSTDNTLK 685 (793)
T ss_pred -----------------------------------------------------CCCCCEEEEEEeCCCEEEEEECCCEEE
Confidence 223345566676556689999999999
Q ss_pred EEcCC-------CCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccc-------------cccccccC
Q 003217 444 QWDPN-------GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLG-------------GWVAHSSP 500 (838)
Q Consensus 444 lWD~~-------g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~-------------~l~gH~~~ 500 (838)
+||+. +++++++.+|...+.++++ +|.+|++|+.|++|++|+.. ...+. ....|...
T Consensus 686 iWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 765 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF 765 (793)
T ss_pred EEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE
Confidence 99983 2578899999999888754 68899999999999999965 22211 12345667
Q ss_pred EEEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 501 VIKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 501 V~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
|.++++ ++..+++|+.||+|++|++
T Consensus 766 V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 766 ISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999885 6779999999999999985
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-25 Score=234.88 Aligned_cols=265 Identities=22% Similarity=0.239 Sum_probs=209.5
Q ss_pred EecCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003217 139 VCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMC 217 (838)
Q Consensus 139 ~~~~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrv 217 (838)
+.++++|.+|+ .|.+-+|+........+ ..-| .++|.++.++++|.+++||+.||.||.
T Consensus 105 tPeGRRLltgs~SGEFtLWNg~~fnFEti-------------------lQaH-Ds~Vr~m~ws~~g~wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 105 TPEGRRLLTGSQSGEFTLWNGTSFNFETI-------------------LQAH-DSPVRTMKWSHNGTWMISGDKGGMIKY 164 (464)
T ss_pred cCCCceeEeecccccEEEecCceeeHHHH-------------------hhhh-cccceeEEEccCCCEEEEcCCCceEEe
Confidence 35677888865 57999999854332222 1134 889999999999999999999999999
Q ss_pred EECCCCccCCCCCcceeEEecccc-ccEEEEEEecCC-CEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeecee
Q 003217 218 WKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYG-DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG-~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 295 (838)
|+.+- ..+..+++|. .+|++|+|||+. +++|+|+||+|||||..-.+....
T Consensus 165 Wqpnm---------nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v------------------ 217 (464)
T KOG0284|consen 165 WQPNM---------NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV------------------ 217 (464)
T ss_pred cccch---------hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe------------------
Confidence 99876 3456677765 999999999965 489999999999999754221111
Q ss_pred ecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceee
Q 003217 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (838)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (838)
|++| .-+|+++.-.+....|++++ |..|++||.++|.|+.++.+|
T Consensus 218 -L~GH----------gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~H----------------------- 263 (464)
T KOG0284|consen 218 -LRGH----------GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGH----------------------- 263 (464)
T ss_pred -eccC----------CCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhc-----------------------
Confidence 2334 44788888888888999988 568999999999997665433
Q ss_pred EEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCee
Q 003217 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRL 452 (838)
Q Consensus 375 ~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l 452 (838)
...|.++.|++++. |+++|.|.+++++|+ .-+.+
T Consensus 264 --------------------------------------------KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 264 --------------------------------------------KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred --------------------------------------------cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 23455677888877 899999999999999 57889
Q ss_pred eEeecCCccEEEEEE---cCCEEEEEeeCCeEEEEeCC-Cccc-ccccccccCEEEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 453 QDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLL-GGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 453 ~tl~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i-~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
+++.+|...|+++.. ....+.+|+.||.|..|.+. .+.+ ..=.+|...|++++. -|..|+|||.|.++|.|.-
T Consensus 300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred HHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 999999999999954 35699999999999999987 4444 444699999999996 4778999999999999985
Q ss_pred CCC
Q 003217 526 TSP 528 (838)
Q Consensus 526 ~s~ 528 (838)
..|
T Consensus 380 ~rp 382 (464)
T KOG0284|consen 380 NRP 382 (464)
T ss_pred CCC
Confidence 443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-23 Score=232.21 Aligned_cols=369 Identities=15% Similarity=0.181 Sum_probs=251.0
Q ss_pred eeEEEEecCC-E-EEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCTEE-Q-LWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~~~-~-l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+.++....+ . |..| .||.||+|++.... .+++..+| ..+|+|+.||..|..|+|||
T Consensus 67 evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~-------------------~~~tfngH-K~AVt~l~fd~~G~rlaSGs 126 (888)
T KOG0306|consen 67 EVTCLRSSDDILLLAVGYADGSVQIFSLESEE-------------------ILITFNGH-KAAVTTLKFDKIGTRLASGS 126 (888)
T ss_pred eEEEeeccCCcceEEEEecCceEEeeccCCCc-------------------eeeeeccc-ccceEEEEEcccCceEeecC
Confidence 3444544444 3 3444 69999999986421 12344556 88999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCC--cee---
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPE--ERH--- 284 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~--~~~--- 284 (838)
.|+.|.+||+-.. .-...+.||...|+.+.|..+.+ |+|.|.|+.||+||+++..+--++-.+ +.+
T Consensus 127 kDt~IIvwDlV~E--------~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~ 198 (888)
T KOG0306|consen 127 KDTDIIVWDLVGE--------EGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV 198 (888)
T ss_pred CCccEEEEEeccc--------eeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence 9999999999875 45678999999999999998555 789999999999999874432111000 000
Q ss_pred ------------------------------------------------eeEEEEe---e---------------------
Q 003217 285 ------------------------------------------------TAALIVE---R--------------------- 292 (838)
Q Consensus 285 ------------------------------------------------~~~~~~~---~--------------------- 292 (838)
...+..+ |
T Consensus 199 ~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E 278 (888)
T KOG0306|consen 199 LDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEE 278 (888)
T ss_pred EecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHH
Confidence 0000000 0
Q ss_pred ---------------------------c------------------eeec--ccce-------eccceee----------
Q 003217 293 ---------------------------S------------------YIDL--RSHL-------SVNGFSS---------- 308 (838)
Q Consensus 293 ---------------------------s------------------~~~l--~~~~-------~~~~~~~---------- 308 (838)
+ .+++ .++. ..+.++.
T Consensus 279 ~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~ 358 (888)
T KOG0306|consen 279 IAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTS 358 (888)
T ss_pred HHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCC
Confidence 0 0000 0000 0000000
Q ss_pred ------------eecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCccccc--ccceee
Q 003217 309 ------------ILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM--EDEFKT 374 (838)
Q Consensus 309 ------------~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~--~~~~~~ 374 (838)
-+.++|+.++++.+...++|++.+.|++|+..|.+|++++...-.. .+ .+-+.....+ ...-++
T Consensus 359 p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l-~~-~Fvpgd~~Iv~G~k~Gel 436 (888)
T KOG0306|consen 359 PEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYIL-AS-KFVPGDRYIVLGTKNGEL 436 (888)
T ss_pred ccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEE-EE-EecCCCceEEEeccCCce
Confidence 0124688888888888888888889999999999999988643111 11 1111000000 000000
Q ss_pred EEE---e------cCCCCcceeeeeEeecCcceeeecCCcEEEEec-----c--Ccc-----------ccCCCceEEEEE
Q 003217 375 KIV---T------SSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-----K--GGF-----------GDDNRRTEALTT 427 (838)
Q Consensus 375 ~~~---s------~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-----~--g~~-----------~~~~~~v~ala~ 427 (838)
.++ + ...++.+..++...+++...++|++|.+.+.|. . |+- .+-...|.++.+
T Consensus 437 ~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~ 516 (888)
T KOG0306|consen 437 QVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSV 516 (888)
T ss_pred EEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEE
Confidence 000 0 012355566777777777788888888777775 1 111 112346788999
Q ss_pred cCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEE
Q 003217 428 SIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVI 502 (838)
Q Consensus 428 S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~ 502 (838)
||||+ |+.+=-|+||+++-+ +-+..-.+-||.-||.|+ ++|++.|++||.|.+|++|-+. |.|-+++-+|.+.|.
T Consensus 517 Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm 596 (888)
T KOG0306|consen 517 SPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVM 596 (888)
T ss_pred cCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCcee
Confidence 99999 566668999999999 557777888999999997 7899999999999999999999 999999999999999
Q ss_pred EEEe--CCCEEEEEcCCCCeeeeecCCCCCCc
Q 003217 503 KMAV--GAGYIFTLANHGGIRGWNVTSPGPLD 532 (838)
Q Consensus 503 sla~--dg~~l~S~S~DgtIrlWdl~s~~~~d 532 (838)
+|.+ ....++|+|.|+.||-||-..+..+.
T Consensus 597 ~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq 628 (888)
T KOG0306|consen 597 SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQ 628 (888)
T ss_pred EEEEcccceeEEEecCcceEEeechhhhhhhe
Confidence 9986 44568899999999999966655443
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-24 Score=221.36 Aligned_cols=266 Identities=15% Similarity=0.168 Sum_probs=206.1
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~ 227 (838)
+.|.+|++||..++.... .+++ | +.+|..++|+..|++|+|.|.|-.|++||.++-
T Consensus 127 s~d~tikv~D~~tg~~e~-----------------~LrG--H-t~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~---- 182 (406)
T KOG0295|consen 127 SEDATIKVFDTETGELER-----------------SLRG--H-TDSVFDISFDASGKYLATCSSDLSAKLWDFDTF---- 182 (406)
T ss_pred cCCceEEEEEccchhhhh-----------------hhhc--c-ccceeEEEEecCccEEEecCCccchhheeHHHH----
Confidence 468999999998765432 1222 2 678999999999999999999999999999874
Q ss_pred CCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccce
Q 003217 228 DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF 306 (838)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~ 306 (838)
++++..+.||.-.|.+++|-|.|. ++|+|.|.+||.|+++++.+..++.++.
T Consensus 183 ---~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~------------------------ 235 (406)
T KOG0295|consen 183 ---FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHS------------------------ 235 (406)
T ss_pred ---HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCch------------------------
Confidence 367788899999999999999997 8999999999999999987666555432
Q ss_pred eeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcc
Q 003217 307 SSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKA 385 (838)
Q Consensus 307 ~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~ 385 (838)
.-++.+....+|..+++++ +.++++|-+.+++|...|..|..++..+.+.+....+- +. ...+. .+
T Consensus 236 -----ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~---i~--~at~~-~~-- 302 (406)
T KOG0295|consen 236 -----EWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPS---IS--EATGS-TN-- 302 (406)
T ss_pred -----HhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcc---hh--hccCC-CC--
Confidence 2355666666677777776 68999999999999888888877554444433221110 00 00000 00
Q ss_pred eeeeeEeecCcceeeecCCcEEEEec--cC----ccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeec
Q 003217 386 QSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY 457 (838)
Q Consensus 386 ~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~ 457 (838)
.+.....++.|.++++|. .| ++.+|...|..++|+|.|+ |+|+.+|+++++||+ +++|.+++..
T Consensus 303 --------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a 374 (406)
T KOG0295|consen 303 --------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA 374 (406)
T ss_pred --------CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC
Confidence 112345677788877776 23 4668999999999999998 899999999999999 7899999999
Q ss_pred CCccEEEEEEc--CCEEEEEeeCCeEEEEe
Q 003217 458 LPFAVQCLCTF--GSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 458 H~~~V~sls~d--G~~LasGs~DgtIrlWD 485 (838)
|..-|+++.++ -.++++|+-|.++++|.
T Consensus 375 h~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 375 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CcceeEEEecCCCCceEEeccccceeeeee
Confidence 99999999875 34999999999999996
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-22 Score=227.17 Aligned_cols=359 Identities=16% Similarity=0.226 Sum_probs=250.8
Q ss_pred EEEecCC--EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeee---cCCCCeEEEEEcCCCCEEEEEeC
Q 003217 137 TIVCTEE--QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESV---KGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 137 ~l~~~~~--~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
+|..+.+ .+.++-.+-+.||-...... +.-.||..+. .+...|.|+.|+.|.++|++||+
T Consensus 101 ~i~fSPng~~fav~~gn~lqiw~~P~~~~---------------~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr 165 (893)
T KOG0291|consen 101 AIKFSPNGKFFAVGCGNLLQIWHAPGEIK---------------NEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR 165 (893)
T ss_pred eEEECCCCcEEEEEecceeEEEecCcchh---------------cccCcceEeeeecCCccceeEEEeccCCceEEeccc
Confidence 4444433 45557788999997633111 1345664321 12668999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeec------------
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSL------------ 278 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~------------ 278 (838)
|-++|+|.++... + -....+.||+++|-+..|..|.. |+|-|.||.+.+|..........-
T Consensus 166 D~s~rl~~v~~~k----~--~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~ 239 (893)
T KOG0291|consen 166 DLSARLFGVDGNK----N--LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEE 239 (893)
T ss_pred cceEEEEEecccc----c--cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccc
Confidence 9999999998741 1 12456889999999999999886 999999999999987631110000
Q ss_pred ---CCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecCCce
Q 003217 279 ---KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQI 354 (838)
Q Consensus 279 ---~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~~~ 354 (838)
..++ .+... .+...+-| .+.-.+.++++.++......++++-. +.+.|+.+-.-.+++.+....+.
T Consensus 240 ~~~~~Ee-k~~~~----~~~k~~k~-----~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~ 309 (893)
T KOG0291|consen 240 MDEDGEE-KTHKI----FWYKTKKH-----YLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQK 309 (893)
T ss_pred ccccchh-hhcce----EEEEEEee-----eecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccce
Confidence 0000 00000 00000001 01111356777777666666666643 55679999999999988876555
Q ss_pred EEeeecccCcccccccc-----eeeEEEec-------CCCCcceeeeeEeecCcceeeecCCcEEEEecc------Cccc
Q 003217 355 ENRVDMSLLPDFAMEDE-----FKTKIVTS-------SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFG 416 (838)
Q Consensus 355 ~~~~~~s~~~~~~~~~~-----~~~~~~s~-------~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~------g~~~ 416 (838)
+..+.+...++...-.. ..+|-|.. ..+-....++..++++..+.+|..|+-.++|.. .+|.
T Consensus 310 I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt 389 (893)
T KOG0291|consen 310 ILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT 389 (893)
T ss_pred eeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec
Confidence 45555544333322111 11232322 112334457888888889999999998888862 3688
Q ss_pred cCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEE--EEEEc--CCEEEEEeeCC-eEEEEeCC-C
Q 003217 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTF--GSQIWVGYMNG-IVQVLDLE-G 488 (838)
Q Consensus 417 ~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~--sls~d--G~~LasGs~Dg-tIrlWD~~-g 488 (838)
+|+..|.++.|+..|+ +++.|-|||||.||+ .+++.++|+. ..++. ||+.| |..+.+|+.|. .|.||+++ |
T Consensus 390 eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 390 EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG 468 (893)
T ss_pred cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC
Confidence 9999999999999998 789999999999999 7899999986 33444 77776 88888888775 79999987 8
Q ss_pred cccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 489 NLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 489 ~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
+++..+.||.++|.+++ ++++.|+|+|+|+|||+||+-.
T Consensus 469 qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 469 QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS 509 (893)
T ss_pred eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence 99999999999999876 5889999999999999999744
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-23 Score=215.08 Aligned_cols=266 Identities=21% Similarity=0.334 Sum_probs=203.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|.|++++|++++|++|+.||.|++|++.++ +....+.+|...|.++.|+++++ |++++.|+.|++|++
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG--------ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC--------CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 779999999999999999999999999999886 45667889999999999999996 889999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
.+.+....+.. + ...+.++...+.+..+++++ ++.+++||+.+++.+..+
T Consensus 81 ~~~~~~~~~~~-------------------~----------~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 81 ETGECVRTLTG-------------------H----------TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL 131 (289)
T ss_pred CcccceEEEec-------------------c----------CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe
Confidence 76422211110 1 22466677776667777777 789999999988887777
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec-c-----CccccCCCce
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-K-----GGFGDDNRRT 422 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~-----g~~~~~~~~v 422 (838)
..+......+.+. +.+..++.+..++..+++. . ..+..+...+
T Consensus 132 ~~~~~~i~~~~~~-------------------------------~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i 180 (289)
T cd00200 132 RGHTDWVNSVAFS-------------------------------PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV 180 (289)
T ss_pred ccCCCcEEEEEEc-------------------------------CcCCEEEEEcCCCcEEEEEccccccceeEecCcccc
Confidence 6443322222222 2222223333233333332 1 1233455678
Q ss_pred EEEEEcCCC-cEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCC-Cccccccccc
Q 003217 423 EALTTSIDG-MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (838)
Q Consensus 423 ~ala~S~dg-~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~-g~~i~~l~gH 497 (838)
.++.+++++ .+++++.|+.|++||. .++.+..+..|...|.++.++ +..+++++.|+.|++||+. ++.+..+.+|
T Consensus 181 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 260 (289)
T cd00200 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH 260 (289)
T ss_pred ceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc
Confidence 899999998 5888888999999999 588888888999999998764 5688887779999999987 7788888899
Q ss_pred ccCEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 498 SSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 498 ~~~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
...|.++.+ +++++++++.|+.|++|+
T Consensus 261 ~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 261 TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999986 458999999999999996
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-23 Score=207.60 Aligned_cols=266 Identities=16% Similarity=0.203 Sum_probs=198.4
Q ss_pred EEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003217 145 LWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNAR 223 (838)
Q Consensus 145 l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g 223 (838)
|++ |+|..||+|+........| ...+.+ .| ...|.++|++|.|++|++||.|.++-+|.-..+
T Consensus 30 lAscg~Dk~vriw~~~~~~s~~c--------------k~vld~-~h-krsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ 93 (312)
T KOG0645|consen 30 LASCGTDKAVRIWSTSSGDSWTC--------------KTVLDD-GH-KRSVRSVAWSPHGRYLASASFDATVVIWKKEDG 93 (312)
T ss_pred EEeecCCceEEEEecCCCCcEEE--------------EEeccc-cc-hheeeeeeecCCCcEEEEeeccceEEEeecCCC
Confidence 444 6799999999864322222 000001 23 779999999999999999999999999987764
Q ss_pred ccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeeccccee
Q 003217 224 LLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLS 302 (838)
Q Consensus 224 ~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~ 302 (838)
.|++..++.||.+.|.+++||++|. |+|+|.|+.|-||.++.... + .+ .++ |..|
T Consensus 94 ------efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-f------ec-~aV--------L~~H-- 149 (312)
T KOG0645|consen 94 ------EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-F------EC-IAV--------LQEH-- 149 (312)
T ss_pred ------ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-E------EE-Eee--------eccc--
Confidence 5788999999999999999999998 89999999999999863211 1 01 111 1223
Q ss_pred ccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCC
Q 003217 303 VNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSK 381 (838)
Q Consensus 303 ~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~ 381 (838)
+.+|+.+...|....+++++ |+||++|+-..+ ..++.
T Consensus 150 --------tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d---------ddW~c------------------------- 187 (312)
T KOG0645|consen 150 --------TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD---------DDWEC------------------------- 187 (312)
T ss_pred --------cccccEEEEcCCcceeEEeccCCeEEEEeecCC---------CCeeE-------------------------
Confidence 66899999999889999999 579999974311 11100
Q ss_pred CCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC-cEEEEECCCeEEEEcCCCCeeeEee-cCC
Q 003217 382 KDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDPNGNRLQDFQ-YLP 459 (838)
Q Consensus 382 ~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg-~l~Sgs~DgtIrlWD~~g~~l~tl~-~H~ 459 (838)
..++.+|...|.+++|++.| +|++++.|++|+||-.- ..+. .|+
T Consensus 188 ------------------------------~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~----~~~~~~~s 233 (312)
T KOG0645|consen 188 ------------------------------VQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY----TDLSGMHS 233 (312)
T ss_pred ------------------------------EEEecCccceEEEEEecCCCceEEEecCCcceEeeeec----cCcchhcc
Confidence 00133455567889999988 59999999999999752 1111 377
Q ss_pred ccEEEEEEcCCEEEEEeeCCeEEEEeCCC-------cc-cccccccccCEEEEEeCC---CEEEEEcCCCCeeeeecC
Q 003217 460 FAVQCLCTFGSQIWVGYMNGIVQVLDLEG-------NL-LGGWVAHSSPVIKMAVGA---GYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 460 ~~V~sls~dG~~LasGs~DgtIrlWD~~g-------~~-i~~l~gH~~~V~sla~dg---~~l~S~S~DgtIrlWdl~ 526 (838)
.+++.++.....|++|+.|+.|+|+--.. ++ ...-.+|...|++|.+++ +.|+|+|.||.|++|.+.
T Consensus 234 r~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 234 RALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 88888888867999999999999997431 22 335678999999999654 589999999999999864
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-24 Score=239.75 Aligned_cols=298 Identities=13% Similarity=0.205 Sum_probs=237.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
++-|..++|.|.--+|.++-..|.|++||-.-+ .++..|..|.++|.+|+|.|.+- ++||++|-.||||+.
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~--------tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG--------TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhh--------hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 446888999999999999999999999998765 56778999999999999999988 579999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l 348 (838)
.+..+.+++.++ -..|+.+.+.+.-..|.|++| +||+||+-.+++|+.++
T Consensus 81 k~rrclftL~GH-----------------------------lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl 131 (1202)
T KOG0292|consen 81 KTRRCLFTLLGH-----------------------------LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL 131 (1202)
T ss_pred ccceehhhhccc-----------------------------cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE
Confidence 776665555432 234677788887778888885 79999999999999999
Q ss_pred ecCCceEEeeeccc----CcccccccceeeEEEecCCCCcceeeeeEee--cCcc---eeeecCCcEEEEeccCccccCC
Q 003217 349 NIDGQIENRVDMSL----LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ--RSRN---AIMGAADAVRRVAAKGGFGDDN 419 (838)
Q Consensus 349 ~~~~~~~~~~~~s~----~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~--~~~~---~~~g~~~~v~~v~~~g~~~~~~ 419 (838)
++|.+.+....+.+ ..+.+.|+++|+|..++.++...... ++.+ .+.+ -+.|..|.|... .+.+|.
T Consensus 132 tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg-~~e~~~~~~~~~~dLfg~~DaVVK~----VLEGHD 206 (1202)
T KOG0292|consen 132 TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG-SLEDQMRGQQGNSDLFGQTDAVVKH----VLEGHD 206 (1202)
T ss_pred ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCC-CchhhhhccccchhhcCCcCeeeee----eecccc
Confidence 99999877777776 34566788999998888754332111 1111 1111 134555655433 367899
Q ss_pred CceEEEEEcCC-CcEEEEECCCeEEEEcC-CCC--eeeEeecCCccEEEEEEcC--CEEEEEeeCCeEEEEeCC-Ccccc
Q 003217 420 RRTEALTTSID-GMIWTGGANGLLLQWDP-NGN--RLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLE-GNLLG 492 (838)
Q Consensus 420 ~~v~ala~S~d-g~l~Sgs~DgtIrlWD~-~g~--~l~tl~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~-g~~i~ 492 (838)
..|...+|.|- ..++||++|..||+|.. +.+ .+.+..||.+.|.|+-+++ ..|.|.++|++|||||++ .+.++
T Consensus 207 RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~ 286 (1202)
T KOG0292|consen 207 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQ 286 (1202)
T ss_pred cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccccee
Confidence 99999999885 45899999999999998 343 4677889999999998887 699999999999999998 67899
Q ss_pred cccccccCEEEEEeCCCE-EEEEcCCCCeeeeecCCCCC
Q 003217 493 GWVAHSSPVIKMAVGAGY-IFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 493 ~l~gH~~~V~sla~dg~~-l~S~S~DgtIrlWdl~s~~~ 530 (838)
+++--.+.-|.|+.++.. |+.+++|+++.++.+..-.|
T Consensus 287 tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 287 TFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERP 325 (1202)
T ss_pred eeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCc
Confidence 998888899999988764 77899999999999875444
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-24 Score=224.23 Aligned_cols=272 Identities=13% Similarity=0.149 Sum_probs=193.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
+..|+-+.||++|++|||||+|.+..+|++... ..++...++.||..+|.-|.||||.+ |++|+.|..+++||+
T Consensus 224 tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d-----~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD-----VHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV 298 (519)
T ss_pred CCcEEEEEEcCCCeeEeeccCCceEEEEEEecC-----cceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence 889999999999999999999999999998763 34677888999999999999999997 899999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
.++.....+... + ...+.+.+--+++..+.+|+ |++|..||+.- +.+...
T Consensus 299 ~tgd~~~~y~~~------------------~----------~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W 349 (519)
T KOG0293|consen 299 DTGDLRHLYPSG------------------L----------GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNW 349 (519)
T ss_pred CcchhhhhcccC------------------c----------CCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcc
Confidence 887643322110 0 01233344455666666666 68999999863 333332
Q ss_pred ecCC-ceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCc-EEEEec----cCccccCCCce
Q 003217 349 NIDG-QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAA----KGGFGDDNRRT 422 (838)
Q Consensus 349 ~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~-v~~v~~----~g~~~~~~~~v 422 (838)
++-. +-+..++++. ++..+++-..+. ++.+.. .-.+......+
T Consensus 350 ~gvr~~~v~dlait~-------------------------------Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~i 398 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITY-------------------------------DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPI 398 (519)
T ss_pred cccccceeEEEEEcC-------------------------------CCcEEEEEecccceeeechhhhhhhccccccCce
Confidence 2110 0001111111 111111111111 111111 11133455778
Q ss_pred EEEEEcCCCcEE-EEECCCeEEEEcC-CCCeeeEeecCCccEEEE--EE---cCCEEEEEeeCCeEEEEeCC-Ccccccc
Q 003217 423 EALTTSIDGMIW-TGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CT---FGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (838)
Q Consensus 423 ~ala~S~dg~l~-Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sl--s~---dG~~LasGs~DgtIrlWD~~-g~~i~~l 494 (838)
.++.+|.||+++ +.=.+..|.+||+ +.+.++.+.||...-.-+ ++ +.++|+|||+|+.|+||+.. |+++.++
T Consensus 399 ts~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L 478 (519)
T KOG0293|consen 399 TSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL 478 (519)
T ss_pred eEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee
Confidence 899999999964 4457889999999 567788899988653333 23 34699999999999999986 8999999
Q ss_pred cccccCEEEEEe---CCCEEEEEcCCCCeeeeecCC
Q 003217 495 VAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 495 ~gH~~~V~sla~---dg~~l~S~S~DgtIrlWdl~s 527 (838)
.||+..|++|++ ++.+++|||.|||||+|....
T Consensus 479 sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 479 SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999996 566899999999999998643
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=233.67 Aligned_cols=279 Identities=16% Similarity=0.226 Sum_probs=213.5
Q ss_pred eeEEEEecCCEEE--EecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 134 FLRTIVCTEEQLW--AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 134 ~~~~l~~~~~~l~--~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
-+|++....+.+. ++..+.|++||..+..+... +. .+-+.|..|-|.+++|++|.+
T Consensus 375 dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRT---------------------i~-~~y~l~~~Fvpgd~~Iv~G~k 432 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRT---------------------IT-CGYILASKFVPGDRYIVLGTK 432 (888)
T ss_pred heeEEEeecCceeeeecCCCcEEEEEccCcceeEE---------------------ec-cccEEEEEecCCCceEEEecc
Confidence 4777877655333 35678999999988665431 22 567899999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
.|.+.++|+... ..+-+.++|.++|++|+.+||++ ++|||.|.|||.||..-. .. .+.... ..+.+
T Consensus 433 ~Gel~vfdlaS~--------~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~---~~-~~gt~~-k~lsl 499 (888)
T KOG0306|consen 433 NGELQVFDLASA--------SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLV---VS-VPGTQK-KVLSL 499 (888)
T ss_pred CCceEEEEeehh--------hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEE---ec-cCcccc-eeeee
Confidence 999999999986 45556789999999999999998 999999999999997321 01 000000 00000
Q ss_pred eeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccc
Q 003217 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (838)
. |.... --..++.|+..+|++..++.+- +.|++++-+.|-++--.
T Consensus 500 ~--------~~rtL----el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFfls---------------------- 545 (888)
T KOG0306|consen 500 K--------HTRTL----ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLS---------------------- 545 (888)
T ss_pred c--------cceEE----eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeee----------------------
Confidence 0 00000 0156789999999887776554 67787776654332111
Q ss_pred cceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-
Q 003217 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP- 447 (838)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~- 447 (838)
+-+|.-+|.++-+|||+. +++||.|.+||+|-+
T Consensus 546 ---------------------------------------------LYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 546 ---------------------------------------------LYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred ---------------------------------------------ecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 234555677888999998 689999999999999
Q ss_pred CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeee
Q 003217 448 NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRG 522 (838)
Q Consensus 448 ~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrl 522 (838)
=|.|-+.|-+|.+.|+++-+ ....+++++.|+.|+-||.+ -.+++++.+|...|++++ ++|.+++|+|+|.+||+
T Consensus 581 FGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRl 660 (888)
T KOG0306|consen 581 FGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRL 660 (888)
T ss_pred cchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEe
Confidence 49999999999999999965 34589999999999999987 578999999999999987 58899999999999999
Q ss_pred eecC
Q 003217 523 WNVT 526 (838)
Q Consensus 523 Wdl~ 526 (838)
|.-.
T Consensus 661 wE~t 664 (888)
T KOG0306|consen 661 WERT 664 (888)
T ss_pred eecc
Confidence 9843
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-23 Score=215.44 Aligned_cols=299 Identities=15% Similarity=0.143 Sum_probs=189.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
+.+|+|++.+|+.++++||+.|...-+|+..++ .....+.||+..|+++.||.||. |+||..+|.|+||..
T Consensus 64 ~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--------e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 64 TDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--------EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred CCceEEEEeCCCCceEEecCCCceEEEEEccCC--------cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 889999999999999999999999999999998 56788999999999999999998 689999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
.++.....+..+ -.++..+.-.+....++.|+ |+.+-.|.+.++...+++
T Consensus 136 stg~~~~~~~~e-----------------------------~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~ 186 (399)
T KOG0296|consen 136 STGGEQWKLDQE-----------------------------VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVM 186 (399)
T ss_pred ccCceEEEeecc-----------------------------cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEe
Confidence 886655444211 11122222222222222222 223334444443333444
Q ss_pred ecCCceEEeeecccCccccc----ccceeeEEEecCCCCc--------ceeeeeEeecCcceeeecCCcEEEEec-----
Q 003217 349 NIDGQIENRVDMSLLPDFAM----EDEFKTKIVTSSKKDK--------AQSSFGFFQRSRNAIMGAADAVRRVAA----- 411 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~----~~~~~~~~~s~~~~~~--------~~~s~~~~~~~~~~~~g~~~~v~~v~~----- 411 (838)
.+|.+..+...+.+...... +..+++|..+...... ....+.+...+..++.|..++...+-.
T Consensus 187 ~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK 266 (399)
T KOG0296|consen 187 SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGK 266 (399)
T ss_pred cCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccce
Confidence 44433333223332222111 1111111111000000 000111111122223333333222211
Q ss_pred -----cCc----cccC---CCceEEEEEcCCCc-EEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEEcC-CEEEEEee
Q 003217 412 -----KGG----FGDD---NRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFG-SQIWVGYM 477 (838)
Q Consensus 412 -----~g~----~~~~---~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~dG-~~LasGs~ 477 (838)
.++ ...+ ...|.++.++..=. .+.|+-||+|-|||.....++..-.|...|..+.+.+ .+|++++.
T Consensus 267 Vv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~ 346 (399)
T KOG0296|consen 267 VVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACA 346 (399)
T ss_pred EEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeecc
Confidence 100 0112 22344444444323 4789999999999997666667778999999998877 69999999
Q ss_pred CCeEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecC
Q 003217 478 NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 478 DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~ 526 (838)
+|.|++||.. |++..++.||+..|..++ ++.+.++|+|.|++.+++++.
T Consensus 347 ~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 347 NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999986 999999999999999987 688899999999999999863
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-23 Score=209.98 Aligned_cols=239 Identities=19% Similarity=0.269 Sum_probs=184.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.+.|+|+-|++|.++|+|+|.||.+.|||.-+. .....+.-...+|..+||+|.|+ ++.|+-|+..-|+++
T Consensus 55 ~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt--------nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 55 LNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT--------NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred ccceeeeEecCCcCeEEeeccCCeEEEEEcccc--------cceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 779999999999999999999999999998886 33444445578999999999999 578999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEe
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~ 349 (838)
.+........ +++ .+.+| .+.+.+.-+-+++..|-+++|.|..+||+++|+.+..|.
T Consensus 127 s~~d~~g~~~----------v~r---~l~gH----------tgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 127 STRDAEGNVR----------VSR---ELAGH----------TGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred ccccccccce----------eee---eecCc----------cceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEec
Confidence 6532111000 000 12223 334555556555555555568899999999999887776
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~ 429 (838)
+|.. .|.+|.++|
T Consensus 184 GH~g-------------------------------------------------------------------DV~slsl~p 196 (343)
T KOG0286|consen 184 GHTG-------------------------------------------------------------------DVMSLSLSP 196 (343)
T ss_pred CCcc-------------------------------------------------------------------cEEEEecCC
Confidence 5432 234555666
Q ss_pred -CCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccccccc--cccCE
Q 003217 430 -DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA--HSSPV 501 (838)
Q Consensus 430 -dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~g--H~~~V 501 (838)
+++ .+||+.|++.+|||+ .+.|.|+|.+|...|++|.+ +|.-+++|+.|++.|+||+. .+.+..+.. -...|
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred CCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 555 789999999999999 89999999999999999864 78999999999999999997 555666542 23468
Q ss_pred EEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 502 IKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 502 ~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
+++++ .|++|+.|..|.++.+||.-.
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk 304 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLK 304 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccc
Confidence 88886 799999999999999999543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=229.94 Aligned_cols=277 Identities=17% Similarity=0.210 Sum_probs=202.2
Q ss_pred CCCCCCceeecCCCCCccccCceeEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecC
Q 003217 112 HPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG 190 (838)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g 190 (838)
+++|..++.+ ||- +--+.+ =..|.|.|||.++..-... | .+.
T Consensus 12 rSdRVKsVd~--HPt---------------ePw~la~LynG~V~IWnyetqtmVks-----------------f--eV~- 54 (794)
T KOG0276|consen 12 RSDRVKSVDF--HPT---------------EPWILAALYNGDVQIWNYETQTMVKS-----------------F--EVS- 54 (794)
T ss_pred cCCceeeeec--CCC---------------CceEEEeeecCeeEEEecccceeeee-----------------e--eec-
Confidence 6778888877 541 111222 2367999999976443321 1 123
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.-||.+..|-+.-.++++||.|..|||++.+++ +.+.+|.+|.+.|.+|+..|.-- ++|+|+|-+||+||+
T Consensus 55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~--------ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~w 126 (794)
T KOG0276|consen 55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG--------EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDW 126 (794)
T ss_pred ccchhhheeeeccceEEEecCCceEEEEecccc--------eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeec
Confidence 558888888888899999999999999999997 78899999999999999999764 789999999999999
Q ss_pred CCc-ceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC-CCEEEEeC-CCcEEEEeccCccEEE
Q 003217 270 EAI-EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 270 ~~~-~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
+.. .+..++.+ | +..|..+++.|. ..+.+|++ |+||++|.+-+..+..
T Consensus 127 e~~wa~~qtfeG-------------------H----------~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf 177 (794)
T KOG0276|consen 127 ENEWACEQTFEG-------------------H----------EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF 177 (794)
T ss_pred cCceeeeeEEcC-------------------c----------ceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce
Confidence 762 22222322 2 234667777664 45777777 7899999987655544
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
+|.+|. +.|.++.
T Consensus 178 Tl~gHe-------------------------------------------------------------------kGVN~Vd 190 (794)
T KOG0276|consen 178 TLEGHE-------------------------------------------------------------------KGVNCVD 190 (794)
T ss_pred eeeccc-------------------------------------------------------------------cCcceEE
Confidence 444332 2223333
Q ss_pred EcCCC---cEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCC--EEEEEeeCCeEEEEeCCC-ccccccccccc
Q 003217 427 TSIDG---MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGS--QIWVGYMNGIVQVLDLEG-NLLGGWVAHSS 499 (838)
Q Consensus 427 ~S~dg---~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~--~LasGs~DgtIrlWD~~g-~~i~~l~gH~~ 499 (838)
+=+.| .|+||++|.+||+||- +..|++++.||.+.|.++++... .|++|++|||+|||+..+ ++..++.---+
T Consensus 191 yy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle 270 (794)
T KOG0276|consen 191 YYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE 270 (794)
T ss_pred eccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc
Confidence 33333 6999999999999999 77999999999999999988764 999999999999999764 56677777778
Q ss_pred CEEEEE--eCCCEEEEEcCCCCeeeeecCCCCC
Q 003217 500 PVIKMA--VGAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 500 ~V~sla--~dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
.||+|+ .++..++.|...|.| .-.+....|
T Consensus 271 RvW~I~~~k~~~~i~vG~Deg~i-~v~lgreeP 302 (794)
T KOG0276|consen 271 RVWCIAAHKGDGKIAVGFDEGSV-TVKLGREEP 302 (794)
T ss_pred eEEEEeecCCCCeEEEeccCCcE-EEEccCCCC
Confidence 999998 344556666555554 334444333
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-24 Score=235.94 Aligned_cols=246 Identities=21% Similarity=0.332 Sum_probs=187.5
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcc
Q 003217 196 CMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 196 ~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~ 273 (838)
.+..|. .+++|+||+.||.||+|+...... ......+.+++.|..+|+.+++..+|+ |+|+|.|.|||+|+.....
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~--~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSN--EPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccC--CcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc
Confidence 455554 456699999999999999876420 001123677899999999999999996 9999999999999985432
Q ss_pred eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEE-cCCCCEEEEeC-CCcEEEEeccCccE--EEEEe
Q 003217 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS-DHSRAKVWSAG-FLSFALWDARTREL--LKVFN 349 (838)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las-~~~~~~V~s~s-~~tI~lWD~~tg~~--l~~l~ 349 (838)
.+.. . .++.| ...|+|++. ......|++|+ |+.|.|||+.+|.. +..+.
T Consensus 107 -~~c~-------s---------tir~H----------~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n 159 (735)
T KOG0308|consen 107 -TFCM-------S---------TIRTH----------KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN 159 (735)
T ss_pred -chhH-------h---------hhhcc----------cchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc
Confidence 1111 0 12223 567889988 56667888888 68899999998732 22111
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~ 429 (838)
++ . .... . .++...|.+++..+
T Consensus 160 ---~~---------t------------~~sl------------------~----------------sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 160 ---NV---------T------------VNSL------------------G----------------SGPKDSIYSLAMNQ 181 (735)
T ss_pred ---cc---------c------------cccC------------------C----------------CCCccceeeeecCC
Confidence 00 0 0000 0 03344566788888
Q ss_pred CCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEE
Q 003217 430 DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKM 504 (838)
Q Consensus 430 dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sl 504 (838)
.|. +++|+..+.+++||. +++.+..+.||+.-|.+|- .||+++++||+||+|||||+. .+|+.++..|.+.||++
T Consensus 182 t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 182 TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWAL 261 (735)
T ss_pred cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEE
Confidence 887 688999999999999 7888999999999999985 479999999999999999998 67999999999999999
Q ss_pred EeC--CCEEEEEcCCCCeeeeecCCC
Q 003217 505 AVG--AGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 505 a~d--g~~l~S~S~DgtIrlWdl~s~ 528 (838)
..+ =+.+++|+.|+.|..=|+++|
T Consensus 262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eeCCCcceEEecCCCCcEEecccCCc
Confidence 854 457999999999999898886
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-24 Score=224.35 Aligned_cols=237 Identities=21% Similarity=0.306 Sum_probs=189.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..+|..|.+.|+|+.|.+|++-|.+.+|+..+- .-...+++|..+|++|.++++|. ++||+.||.||+|+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f--------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqp 167 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF--------NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQP 167 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCcee--------eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEeccc
Confidence 347899999999999999999999999997542 22334689999999999999998 899999999999997
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l 348 (838)
.-.- .... .+| ....|+++++++.+.+.+++++ ++|+|||..-.+.-.+|
T Consensus 168 nmnn-Vk~~-------------------~ah---------h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL 218 (464)
T KOG0284|consen 168 NMNN-VKII-------------------QAH---------HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL 218 (464)
T ss_pred chhh-hHHh-------------------hHh---------hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee
Confidence 4210 0000 011 1356899999998889998885 78999998765544444
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
.+|+ ..|.++.+.
T Consensus 219 ~GHg-------------------------------------------------------------------wdVksvdWH 231 (464)
T KOG0284|consen 219 RGHG-------------------------------------------------------------------WDVKSVDWH 231 (464)
T ss_pred ccCC-------------------------------------------------------------------CCcceeccC
Confidence 4443 223344444
Q ss_pred CC-CcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEE
Q 003217 429 ID-GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (838)
Q Consensus 429 ~d-g~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s 503 (838)
|. |.|+|||.|+.||+||. +|+|+-++.+|.+.|+.+.+ +|.+|+++|.|..++++|.. -+-+.+++||...|++
T Consensus 232 P~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~ 311 (464)
T KOG0284|consen 232 PTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTS 311 (464)
T ss_pred CccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhee
Confidence 43 45899999999999999 89999999999999999876 57899999999999999998 4678999999999999
Q ss_pred EEe---CCCEEEEEcCCCCeeeeecCCCCCC
Q 003217 504 MAV---GAGYIFTLANHGGIRGWNVTSPGPL 531 (838)
Q Consensus 504 la~---dg~~l~S~S~DgtIrlWdl~s~~~~ 531 (838)
+.+ ..+.+.||+.||.|..|.+..-.|+
T Consensus 312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~ 342 (464)
T KOG0284|consen 312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPL 342 (464)
T ss_pred eccccccccceeeccCCCceEEEeccccccc
Confidence 985 4578889999999999998744443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-22 Score=243.77 Aligned_cols=242 Identities=16% Similarity=0.177 Sum_probs=181.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC-CC-EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd 268 (838)
.+.|.+++|+|+|++|+||+.|++|++|+.................+.+ ...|.+++|++. +. |+||+.||+|+|||
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 7789999999999999999999999999986421000000012233333 468999999885 44 89999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcEEEEeccCccEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
+.++.....+. +| ...|.++++.+ ++..+++++ |++|++||+++++++.
T Consensus 562 ~~~~~~~~~~~-------------------~H----------~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 562 VARSQLVTEMK-------------------EH----------EKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred CCCCeEEEEec-------------------CC----------CCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 97643322211 12 44677888875 566788777 6799999999887765
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
++..+. .+.++.
T Consensus 613 ~~~~~~--------------------------------------------------------------------~v~~v~ 624 (793)
T PLN00181 613 TIKTKA--------------------------------------------------------------------NICCVQ 624 (793)
T ss_pred EEecCC--------------------------------------------------------------------CeEEEE
Confidence 543211 122344
Q ss_pred E-cCCCc-EEEEECCCeEEEEcC-CCC-eeeEeecCCccEEEEEE-cCCEEEEEeeCCeEEEEeCC-------Ccccccc
Q 003217 427 T-SIDGM-IWTGGANGLLLQWDP-NGN-RLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-------GNLLGGW 494 (838)
Q Consensus 427 ~-S~dg~-l~Sgs~DgtIrlWD~-~g~-~l~tl~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~-------g~~i~~l 494 (838)
+ +++|. +++|+.|++|++||+ +++ .+.++.+|...|.++.+ ++.+|++|+.|++|+|||+. .+++.++
T Consensus 625 ~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~ 704 (793)
T PLN00181 625 FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF 704 (793)
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEE
Confidence 4 34455 889999999999999 554 57788899999999976 68899999999999999975 2568899
Q ss_pred cccccCEEEEE--eCCCEEEEEcCCCCeeeeecCCCCC
Q 003217 495 VAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 495 ~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
.+|...|..+. ++++++++|+.|++|++|+...+.+
T Consensus 705 ~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~ 742 (793)
T PLN00181 705 MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMP 742 (793)
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCc
Confidence 99999988876 4688999999999999999765543
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=209.00 Aligned_cols=266 Identities=16% Similarity=0.315 Sum_probs=192.6
Q ss_pred ceeEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE
Q 003217 133 CFLRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (838)
Q Consensus 133 ~~~~~l~~~~~-~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG 209 (838)
..+|+++.+.. +.++ +.|.+++|||++++..... +. +| ...|..|++|+.--+|+|+
T Consensus 152 gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt-----------------lt--Gh-i~~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT-----------------LT--GH-IETVRGVAVSKRHPYLFSA 211 (460)
T ss_pred ceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe-----------------ec--ch-hheeeeeeecccCceEEEe
Confidence 46889988744 6655 4599999999987643211 11 22 6689999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEE
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~ 288 (838)
+.|+.|+.||++.. +-++..-||-..|.+++..|.-+ |+||+.|.++||||+.+......+
T Consensus 212 gedk~VKCwDLe~n--------kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l---------- 273 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYN--------KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL---------- 273 (460)
T ss_pred cCCCeeEEEechhh--------hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe----------
Confidence 99999999999986 66788899999999999999765 899999999999999775433222
Q ss_pred EEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccc
Q 003217 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
.+| .+.|..+.+.+.+..|.+++ |.+|++||++.|+-..++..|...+..+.+.+...
T Consensus 274 ---------~GH----------~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~-- 332 (460)
T KOG0285|consen 274 ---------SGH----------TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKEN-- 332 (460)
T ss_pred ---------cCC----------CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchh--
Confidence 223 34566666666667777777 78999999999999888877765443333332110
Q ss_pred cccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec-c----CccccCCCceEEEEEcCCCcEEEEECCCeE
Q 003217 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-K----GGFGDDNRRTEALTTSIDGMIWTGGANGLL 442 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~----g~~~~~~~~v~ala~S~dg~l~Sgs~DgtI 442 (838)
....++.+.+..+.. . ..+.+|...+.+++...||.+++|+++|++
T Consensus 333 -----------------------------~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~ 383 (460)
T KOG0285|consen 333 -----------------------------LFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSI 383 (460)
T ss_pred -----------------------------hhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEE
Confidence 011122222222211 1 124567778899999999999999999999
Q ss_pred EEEcC-CCCeeeEe---ec-----CCccEEEEEEc--CCEEEEEeeCCeEEEEeC
Q 003217 443 LQWDP-NGNRLQDF---QY-----LPFAVQCLCTF--GSQIWVGYMNGIVQVLDL 486 (838)
Q Consensus 443 rlWD~-~g~~l~tl---~~-----H~~~V~sls~d--G~~LasGs~DgtIrlWD~ 486 (838)
..||- +|-..|.+ .+ ....|.+-++| |.+|++|..|.+|++|.-
T Consensus 384 ~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 384 MFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred EEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence 99999 67444433 22 12346666665 779999999999999963
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-24 Score=228.26 Aligned_cols=266 Identities=17% Similarity=0.205 Sum_probs=204.1
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
+-.|.|+.|.| .+.+|.||+.|++|+||++-... +++++++||+.+|.+++|+++|. ++|+|.|++||+||
T Consensus 214 ~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD 286 (503)
T KOG0282|consen 214 TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-------RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD 286 (503)
T ss_pred ccccchhhhccceeeEEEecCCCceEEEEEEecCc-------ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence 78899999999 89999999999999999987632 77899999999999999999997 89999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCC-CEEEEeC-CCcEEEEeccCccEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
++++.+..+++... -..|+-+.+++ ..+.+|+ ++.|+.||++++++++
T Consensus 287 tETG~~~~~f~~~~------------------------------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 287 TETGQVLSRFHLDK------------------------------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred cccceEEEEEecCC------------------------------CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH
Confidence 99987766553211 12344455555 3444444 6789999999999765
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCc-----cc--cCC
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG-----FG--DDN 419 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~-----~~--~~~ 419 (838)
.+..|-+ .+.++.|.+.++.-++.+.+..+++|.-+. +. .+.
T Consensus 337 eYd~hLg-------------------------------~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~ 385 (503)
T KOG0282|consen 337 EYDRHLG-------------------------------AILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEM 385 (503)
T ss_pred HHHhhhh-------------------------------heeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhh
Confidence 4432221 122355666666666666777777775211 11 133
Q ss_pred CceEEEEEcCCCc-EEEEECCCeEEEEcCC----CCeeeEeecCCccEEE----EEEcCCEEEEEeeCCeEEEEeCC-Cc
Q 003217 420 RRTEALTTSIDGM-IWTGGANGLLLQWDPN----GNRLQDFQYLPFAVQC----LCTFGSQIWVGYMNGIVQVLDLE-GN 489 (838)
Q Consensus 420 ~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~----g~~l~tl~~H~~~V~s----ls~dG~~LasGs~DgtIrlWD~~-g~ 489 (838)
....++...|.+. ++.-+.|+.|.++.+. -+.-+.|+||..+=++ +++||++|++|+.||.+.+||-+ .+
T Consensus 386 hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 386 HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK 465 (503)
T ss_pred ccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh
Confidence 4566788888877 6777789999999873 2455778888754333 36799999999999999999987 68
Q ss_pred ccccccccccCEEEEEeC---CCEEEEEcCCCCeeeee
Q 003217 490 LLGGWVAHSSPVIKMAVG---AGYIFTLANHGGIRGWN 524 (838)
Q Consensus 490 ~i~~l~gH~~~V~sla~d---g~~l~S~S~DgtIrlWd 524 (838)
++..|++|+.++..+.++ .+.++|+|.||.|++|+
T Consensus 466 l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 466 LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999875 45799999999999996
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-21 Score=209.20 Aligned_cols=273 Identities=17% Similarity=0.220 Sum_probs=185.0
Q ss_pred CCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceecccee
Q 003217 229 DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFS 307 (838)
Q Consensus 229 ~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~ 307 (838)
.+|+-..+++.|..-|+++.|+|||. ++|++.||+|-++|=.++++...+.... +|
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~----------------aH------- 234 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSD----------------AH------- 234 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCC----------------Cc-------
Confidence 45666777889999999999999998 6899999999999987777655443211 12
Q ss_pred eeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeec-----------ccCccccc----ccc
Q 003217 308 SILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM-----------SLLPDFAM----EDE 371 (838)
Q Consensus 308 ~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~-----------s~~~~~~~----~~~ 371 (838)
.+.+..+.-+|++.++++++ |.+++|||+.++++++++....+++...-. +......+ +.+
T Consensus 235 ---kGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~ 311 (603)
T KOG0318|consen 235 ---KGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS 311 (603)
T ss_pred ---cccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCC
Confidence 45577777788888888877 789999999999999998765443221100 00000000 001
Q ss_pred eeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccC--------------------------------------
Q 003217 372 FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG-------------------------------------- 413 (838)
Q Consensus 372 ~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g-------------------------------------- 413 (838)
-.+++++ +.|.++.++.++++..++.|+.+|...-|..+
T Consensus 312 -~~~~i~G--HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~ 388 (603)
T KOG0318|consen 312 -VLKVISG--HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRV 388 (603)
T ss_pred -hhheecc--cccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEE
Confidence 0111122 23344444444443334444443333222100
Q ss_pred ------c----------------------------------ccc---------CCCceEEEEEcCCCc-EEEEECCCeEE
Q 003217 414 ------G----------------------------------FGD---------DNRRTEALTTSIDGM-IWTGGANGLLL 443 (838)
Q Consensus 414 ------~----------------------------------~~~---------~~~~v~ala~S~dg~-l~Sgs~DgtIr 443 (838)
. +.. -.....+++++|++. ++.|+.|+.|.
T Consensus 389 ~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvh 468 (603)
T KOG0318|consen 389 ISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVH 468 (603)
T ss_pred EecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEE
Confidence 0 000 011345688999988 78999999999
Q ss_pred EEcCCC-Ce--eeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCCCc-c-cccccccccCEEEEEe--CCCEEEEE
Q 003217 444 QWDPNG-NR--LQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGN-L-LGGWVAHSSPVIKMAV--GAGYIFTL 514 (838)
Q Consensus 444 lWD~~g-~~--l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~g~-~-i~~l~gH~~~V~sla~--dg~~l~S~ 514 (838)
++.++| +. ...+..|..+|++++ +||.+||+|...+.|.+||++.+ . ...|.-|+..|.+|++ +.++++||
T Consensus 469 vysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATG 548 (603)
T KOG0318|consen 469 VYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATG 548 (603)
T ss_pred EEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEec
Confidence 999976 32 223557999999985 58999999999999999999844 3 5567779999999996 56789999
Q ss_pred cCCCCeeeeecCCCCC
Q 003217 515 ANHGGIRGWNVTSPGP 530 (838)
Q Consensus 515 S~DgtIrlWdl~s~~~ 530 (838)
|-|..|.+|++..|..
T Consensus 549 SlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 549 SLDTNVIIYSVKKPAK 564 (603)
T ss_pred cccceEEEEEccChhh
Confidence 9999999999987643
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=224.20 Aligned_cols=264 Identities=19% Similarity=0.255 Sum_probs=195.6
Q ss_pred EEEEecCCE-EEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEE-EEEc-CCCCEEEEEeC
Q 003217 136 RTIVCTEEQ-LWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMC-MVGD-EASGVVWSGHR 211 (838)
Q Consensus 136 ~~l~~~~~~-l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~-la~s-~dg~~LaSGs~ 211 (838)
|+++..... +.+ |.|+++|||+-....-.. ..+|.. + .+-|.+ +++. .++..|.+|+.
T Consensus 18 r~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~---------------~~~~~~--~-~g~i~~~i~y~e~~~~~l~~g~~ 79 (745)
T KOG0301|consen 18 RAVAVTDGVCIISGSRDGTVKVWAKKGKQYLE---------------THAFEG--P-KGFIANSICYAESDKGRLVVGGM 79 (745)
T ss_pred heeEecCCeEEeecCCCCceeeeeccCccccc---------------ceeccc--C-cceeeccceeccccCcceEeecc
Confidence 444444443 444 459999999974322111 112221 1 334444 4444 36678999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEe
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~ 291 (838)
|++|.+|...+. .+...|+||+..|.|+....++.|+|||+|.|+|||...... .++.
T Consensus 80 D~~i~v~~~~~~--------~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~--~~l~------------ 137 (745)
T KOG0301|consen 80 DTTIIVFKLSQA--------EPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELV--YSLQ------------ 137 (745)
T ss_pred cceEEEEecCCC--------CchhhhhccccceeeeecCCcCceEecccccceEEecchhhh--cccC------------
Confidence 999999999886 678899999999999999888999999999999999873321 1111
Q ss_pred eceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccccccc
Q 003217 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (838)
Q Consensus 292 ~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~ 370 (838)
+| ...|-.+++-+.+ ++.+|+ |++|++|.. ++++++|.+
T Consensus 138 -------gH----------~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~g-------------------- 177 (745)
T KOG0301|consen 138 -------GH----------TASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSG-------------------- 177 (745)
T ss_pred -------Cc----------chheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhcc--------------------
Confidence 12 2234445555555 555555 789999986 555555443
Q ss_pred ceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcCCCC
Q 003217 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGN 450 (838)
Q Consensus 371 ~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~~g~ 450 (838)
|...|+.|++-+++.++|++.||.||+|+++|+
T Consensus 178 -----------------------------------------------HtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge 210 (745)
T KOG0301|consen 178 -----------------------------------------------HTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE 210 (745)
T ss_pred -----------------------------------------------chhheeeeEEecCCCeEeecCCceEEEEeccCc
Confidence 344456677778888999999999999999999
Q ss_pred eeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCCcccccccccccCEEEEEe-CCCEEEEEcCCCCeeeeecCC
Q 003217 451 RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV-GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 451 ~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~-dg~~l~S~S~DgtIrlWdl~s 527 (838)
++.++.+|++-|++++. ++..|+++++|+++|+|+.. .|.+.+...+-.||++.. ...-++.|+.||.||+|....
T Consensus 211 ~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 211 VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 99999999999999973 57799999999999999976 777888777778999874 556689999999999999653
|
|
| >KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-24 Score=205.84 Aligned_cols=143 Identities=35% Similarity=0.520 Sum_probs=125.3
Q ss_pred CEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcchHHH-HHH
Q 003217 632 TFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNR-RNA 710 (838)
Q Consensus 632 ~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~-Rn~ 710 (838)
.|+.+.+.+|+++.+.+|++.++..++.++++.++++|+++.+||||+|+++++++++.+|||+|||+||.++..+ ||+
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~~~r~~ 81 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVYERRNE 81 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhHHHhhc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999998888 999
Q ss_pred HHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcCcccEEEEeccceeeecCCChHHHHHHhhhc
Q 003217 711 DFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQR 790 (838)
Q Consensus 711 d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~~i~~~ 790 (838)
||++|++++.|...... ..+......+|+|||+||||||+...++.+...++.++
T Consensus 82 d~~~i~~~~~~~~~~~~-------------------------~~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~ 136 (145)
T KOG0565|consen 82 DYQEILNGLRFPSVSPA-------------------------SEPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVK 136 (145)
T ss_pred cHHHHHhhccccccCcc-------------------------cccccccccccEEEEecceeeeecCcccccchhhhhhc
Confidence 99999999998753221 00000011289999999999999984488899999999
Q ss_pred chHHHhhcc
Q 003217 791 CFDWLRERD 799 (838)
Q Consensus 791 ~~~~Ll~~D 799 (838)
.++.|+++|
T Consensus 137 ~~~~l~~~d 145 (145)
T KOG0565|consen 137 SRDGLLEKD 145 (145)
T ss_pred chhhhhccC
Confidence 999998876
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=221.27 Aligned_cols=238 Identities=13% Similarity=0.186 Sum_probs=197.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..-|.|+.+.|.--++..+-+.|.+.+|+.++. ....++.--.-||.+..|-+--+ +++||+|..|||++.
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetq--------tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ--------TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccc--------eeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 557999999999999999999999999999985 45667766678999999988655 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCcc-EEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRE-LLKV 347 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~-~l~~ 347 (838)
.+.++...++. | +..+++++..|....|.+++| .+|++||-..+- |.++
T Consensus 85 nt~ekV~~FeA-------------------H----------~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qt 135 (794)
T KOG0276|consen 85 NTGEKVKTFEA-------------------H----------SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQT 135 (794)
T ss_pred ccceeeEEeec-------------------c----------ccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeE
Confidence 88776554432 2 556889999988888888885 699999976432 2223
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
|.+|.+-|..++|
T Consensus 136 -------------------------------------------------------------------feGH~HyVMqv~f 148 (794)
T KOG0276|consen 136 -------------------------------------------------------------------FEGHEHYVMQVAF 148 (794)
T ss_pred -------------------------------------------------------------------EcCcceEEEEEEe
Confidence 4455555666777
Q ss_pred cCCC--cEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE-c---CCEEEEEeeCCeEEEEeCCC-ccccccccccc
Q 003217 428 SIDG--MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT-F---GSQIWVGYMNGIVQVLDLEG-NLLGGWVAHSS 499 (838)
Q Consensus 428 S~dg--~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~-d---G~~LasGs~DgtIrlWD~~g-~~i~~l~gH~~ 499 (838)
.|.. +.+|+|-|+|||+|.+ ...+..||++|...|+|+.. . ..+|++|+.|.+|+|||-.+ .|+++|.||+.
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~ 228 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN 228 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc
Confidence 6643 4899999999999999 67899999999999999965 2 34999999999999999874 68999999999
Q ss_pred CEEEEEeCCC--EEEEEcCCCCeeeeecCCCCCCc
Q 003217 500 PVIKMAVGAG--YIFTLANHGGIRGWNVTSPGPLD 532 (838)
Q Consensus 500 ~V~sla~dg~--~l~S~S~DgtIrlWdl~s~~~~d 532 (838)
.|..+.+++. .++|||.|||+|+|+-.++...+
T Consensus 229 Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 229 NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEK 263 (794)
T ss_pred cceEEEecCCCcEEEEecCCccEEEecCcceehhh
Confidence 9999999887 58899999999999988776544
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=208.24 Aligned_cols=271 Identities=17% Similarity=0.239 Sum_probs=202.8
Q ss_pred ecCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCC--CCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003217 140 CTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGE--DGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIM 216 (838)
Q Consensus 140 ~~~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIr 216 (838)
.++..|.+|+ ||-|-|||.-++.... .- .....| ..+ ..+|.|+.|+.|..+||||+.||.|+
T Consensus 223 PDgqyLvsgSvDGFiEVWny~~GKlrK-----------DLkYQAqd~f--MMm-d~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 223 PDGQYLVSGSVDGFIEVWNYTTGKLRK-----------DLKYQAQDNF--MMM-DDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred CCCceEeeccccceeeeehhccchhhh-----------hhhhhhhcce--eec-ccceEEEeecccHHHhhccCcCCcEE
Confidence 3455566654 9999999986543211 10 000112 234 77999999999999999999999999
Q ss_pred EEECCCCccCCCCCcceeEEec-cccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeece
Q 003217 217 CWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSY 294 (838)
Q Consensus 217 vWd~~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~ 294 (838)
+|.+.+| .+++.|. +|+..|+++.||.|+. ++|+|.|.+||+-.+.++++...+
T Consensus 289 vWri~tG--------~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf---------------- 344 (508)
T KOG0275|consen 289 VWRIETG--------QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF---------------- 344 (508)
T ss_pred EEEEecc--------hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh----------------
Confidence 9999999 5677775 9999999999999986 999999999999998776543322
Q ss_pred eecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccccccccee
Q 003217 295 IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (838)
Q Consensus 295 ~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (838)
++| ++.+.-..+.++|..|.+++ |++|++|+.+|.+|+.+|.+.+.-
T Consensus 345 ---rGH----------sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d------------------- 392 (508)
T KOG0275|consen 345 ---RGH----------SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTD------------------- 392 (508)
T ss_pred ---cCc----------cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCc-------------------
Confidence 233 34455556667777777766 789999999999999888653310
Q ss_pred eEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcCCCCeee
Q 003217 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQ 453 (838)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~~g~~l~ 453 (838)
-.+.++-..|. ....++.+-..++|.+-++.|+.++
T Consensus 393 ----------~~vnsv~~~PK----------------------------------npeh~iVCNrsntv~imn~qGQvVr 428 (508)
T KOG0275|consen 393 ----------YPVNSVILLPK----------------------------------NPEHFIVCNRSNTVYIMNMQGQVVR 428 (508)
T ss_pred ----------ccceeEEEcCC----------------------------------CCceEEEEcCCCeEEEEeccceEEe
Confidence 00000000000 0123667777889999999999999
Q ss_pred EeecC----CccEEEE-EEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 454 DFQYL----PFAVQCL-CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 454 tl~~H----~~~V~sl-s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
+|... ..-|.|+ ++-|.++++.++|+.++.+.+. |++-+++.-|...|..++. +.+.++|-|.||.+++|.
T Consensus 429 sfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 429 SFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 98742 3456654 7789999999999999999975 9999999999999999985 556788999999999995
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-21 Score=204.69 Aligned_cols=277 Identities=13% Similarity=0.223 Sum_probs=207.2
Q ss_pred eeEEEE--ecCCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIV--CTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~--~~~~~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
=+.+|+ .+++.|..| .||.+|+|+...... ..| .-| .+||++|.++.+|.+|+||+
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~------------------~tl--~~H-kgPI~slKWnk~G~yilS~~ 295 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI------------------STL--GQH-KGPIFSLKWNKKGTYILSGG 295 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchhh------------------hhh--hcc-CCceEEEEEcCCCCEEEecc
Confidence 344454 335566654 589999999753211 111 123 88999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
.||++.+||.-++ ...+.+.-|..+-..|.+-.+..+++.+.|+.|+|..+.......++.
T Consensus 296 vD~ttilwd~~~g--------~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~----------- 356 (524)
T KOG0273|consen 296 VDGTTILWDAHTG--------TVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFI----------- 356 (524)
T ss_pred CCccEEEEeccCc--------eEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeee-----------
Confidence 9999999999887 456677778888677888888889999999999999985433222221
Q ss_pred eeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecCCceEEeeecccCcccccc
Q 003217 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (838)
+| ++.|.++-..+.+..+++++| +|++||....+.+...|..|.+.+....
T Consensus 357 --------GH----------~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~---------- 408 (524)
T KOG0273|consen 357 --------GH----------HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIK---------- 408 (524)
T ss_pred --------cc----------cCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEe----------
Confidence 22 567888888888889999885 7999999888777777766654321111
Q ss_pred cceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-C
Q 003217 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-N 448 (838)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~ 448 (838)
|++. |....+. ..+-.+++++.|++|++||+ .
T Consensus 409 -------wsp~--------------------------------g~v~~n~--------~~~~~l~sas~dstV~lwdv~~ 441 (524)
T KOG0273|consen 409 -------WSPT--------------------------------GPVTSNP--------NMNLMLASASFDSTVKLWDVES 441 (524)
T ss_pred -------ecCC--------------------------------CCccCCC--------cCCceEEEeecCCeEEEEEccC
Confidence 1111 0000000 01124788999999999999 7
Q ss_pred CCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeee
Q 003217 449 GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGW 523 (838)
Q Consensus 449 g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlW 523 (838)
|.++.+|..|..+|++|++ +|+++|+|+.||.|.+|+.. +++.+.+++ ++.|..|.+ +|+++.-+..|+.+++-
T Consensus 442 gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 442 GVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVL 520 (524)
T ss_pred CceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEE
Confidence 9999999999999999976 59999999999999999987 788888876 455888875 78888888899999998
Q ss_pred ecC
Q 003217 524 NVT 526 (838)
Q Consensus 524 dl~ 526 (838)
|++
T Consensus 521 dlr 523 (524)
T KOG0273|consen 521 DLR 523 (524)
T ss_pred Eec
Confidence 864
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=189.14 Aligned_cols=233 Identities=17% Similarity=0.184 Sum_probs=181.4
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-ccccccEEEEEEecCCC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (838)
.+-|..++++|. |.+|||++.|..||+|+...+ +.+.+...+ .+|+..|.++|++|.|+ |++||.|.|+-||
T Consensus 14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-----~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw 88 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-----DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIW 88 (312)
T ss_pred CCcEEEEEeccCCceEEEeecCCceEEEEecCCC-----CcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEe
Confidence 668999999998 789999999999999998853 223444444 58999999999999999 7899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCcc---
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE--- 343 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~--- 343 (838)
.-...+... .. .+.+| -++|++++.+.+|..+++++ |+.|=+|.+..+.
T Consensus 89 ~k~~~efec--------v~---------~lEGH----------EnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfe 141 (312)
T KOG0645|consen 89 KKEDGEFEC--------VA---------TLEGH----------ENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFE 141 (312)
T ss_pred ecCCCceeE--------Ee---------eeecc----------ccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEE
Confidence 875433211 11 12233 56899999999999999988 6789999876332
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceE
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (838)
++.+| .+|.+.|.
T Consensus 142 c~aVL-------------------------------------------------------------------~~HtqDVK 154 (312)
T KOG0645|consen 142 CIAVL-------------------------------------------------------------------QEHTQDVK 154 (312)
T ss_pred EEeee-------------------------------------------------------------------cccccccc
Confidence 22223 23444444
Q ss_pred EEEEcCC-CcEEEEECCCeEEEEcCC-C---CeeeEeecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCCCcccccc-c
Q 003217 424 ALTTSID-GMIWTGGANGLLLQWDPN-G---NRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEGNLLGGW-V 495 (838)
Q Consensus 424 ala~S~d-g~l~Sgs~DgtIrlWD~~-g---~~l~tl~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~g~~i~~l-~ 495 (838)
.+.+.|- +.|+|+|-|+|||+|+-. + +|.+++.+|.+.|.+++++ |.+|++++.|++|+||-.- ..+ .
T Consensus 155 ~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~----~~~~~ 230 (312)
T KOG0645|consen 155 HVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY----TDLSG 230 (312)
T ss_pred EEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec----cCcch
Confidence 4555553 458999999999999873 4 6999999999999999874 7899999999999999843 222 2
Q ss_pred ccccCEEEEEeCCCEEEEEcCCCCeeeeecC
Q 003217 496 AHSSPVIKMAVGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 496 gH~~~V~sla~dg~~l~S~S~DgtIrlWdl~ 526 (838)
-|+..++.++++...|+|++.|+.||++.-.
T Consensus 231 ~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 231 MHSRALYDVPWDNGVIASGGGDDAIRLFKES 261 (312)
T ss_pred hcccceEeeeecccceEeccCCCEEEEEEec
Confidence 4778899999887789999999999999854
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-22 Score=205.24 Aligned_cols=244 Identities=19% Similarity=0.285 Sum_probs=191.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.+-+-|..|+|||++|+|||.||.|.+|+..+|...-+-..+..-.|.-|..+|.|+.||.|.. |+||+.||.||||.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 5678999999999999999999999999998873110011111223445789999999999998 799999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
.++.+...+.. +| +..+.++.++.++..+.+++ |.++++--+++|++++.|
T Consensus 293 ~tG~ClRrFdr------------------AH----------tkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf 344 (508)
T KOG0275|consen 293 ETGQCLRRFDR------------------AH----------TKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF 344 (508)
T ss_pred ecchHHHHhhh------------------hh----------ccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh
Confidence 98876544321 22 45678888988888888888 679999999999998888
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
.+|... |....|+
T Consensus 345 rGHsSy-------------------------------------------------------------------vn~a~ft 357 (508)
T KOG0275|consen 345 RGHSSY-------------------------------------------------------------------VNEATFT 357 (508)
T ss_pred cCcccc-------------------------------------------------------------------ccceEEc
Confidence 776543 2223466
Q ss_pred CCCc-EEEEECCCeEEEEcC-CCCeeeEeec--CCccEEEEEE---cCCEEEEEeeCCeEEEEeCCCccccccccc----
Q 003217 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQY--LPFAVQCLCT---FGSQIWVGYMNGIVQVLDLEGNLLGGWVAH---- 497 (838)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~--H~~~V~sls~---dG~~LasGs~DgtIrlWD~~g~~i~~l~gH---- 497 (838)
+||. ++|+|.||+||+|+. +++|+.+|+. ...+|+++-. +..+++++....+|.+.++.|+.++++..-
T Consensus 358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREg 437 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREG 437 (508)
T ss_pred CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccC
Confidence 7776 899999999999999 7899999984 4457888754 456899999999999999999998888632
Q ss_pred ccCEEEE-EeCCCEEEEEcCCCCeeeeecCCCC
Q 003217 498 SSPVIKM-AVGAGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 498 ~~~V~sl-a~dg~~l~S~S~DgtIrlWdl~s~~ 529 (838)
.+.|.++ .+.|.+++..+.|+.+..+.+.+.+
T Consensus 438 GdFi~~~lSpkGewiYcigED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 438 GDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK 470 (508)
T ss_pred CceEEEEecCCCcEEEEEccCcEEEEEEeecCc
Confidence 2346654 5789999999999999999877644
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-21 Score=189.89 Aligned_cols=266 Identities=17% Similarity=0.226 Sum_probs=201.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|.++.|.-||++..+++.|.+||+|+.-.| .++.+..||...|..++.+.|.. ++||+.|+.|-+||+
T Consensus 17 qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg--------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 17 QGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ccceEEEEEccCCCEEEEcCCCceEEeeccccc--------ceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 779999999999999999999999999999887 67889999999999999999875 999999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccE--EE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL--LK 346 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~--l~ 346 (838)
++++.... +++| -..|..+.+......|++++ |.++++||-++..+ ++
T Consensus 89 ~TGkv~Rr-------------------~rgH----------~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 89 NTGKVDRR-------------------FRGH----------LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred ccCeeeee-------------------cccc----------cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc
Confidence 88754322 2333 34567777877777888888 57899999987532 33
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cCcccc--CCCce
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGGFGD--DNRRT 422 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~~~~--~~~~v 422 (838)
+|.... +. +.++.. ....++.|+.||..|... +|++.. -...|
T Consensus 140 ildea~-----------------D~--------------V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pi 186 (307)
T KOG0316|consen 140 ILDEAK-----------------DG--------------VSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPI 186 (307)
T ss_pred hhhhhc-----------------Cc--------------eeEEEe--cccEEEeeccCCcEEEEEeecceeehhhcCCcc
Confidence 321100 00 001111 122456788888766654 455443 24678
Q ss_pred EEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEE----EEEcCCEEEEEeeCCeEEEEeCC-Cccccccc
Q 003217 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQC----LCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (838)
Q Consensus 423 ~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~s----ls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (838)
+++.||+||. .+.++.|+++|+-|- +|+.++.++||.+.=.- +.....++++|++||.|.+||+. +.++..+.
T Consensus 187 t~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 187 TSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred eeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec
Confidence 9999999998 688899999999999 79999999999986543 33456799999999999999986 77888898
Q ss_pred ccccC-EEEEEeCCCE--EEEEcCCCCeeeeecCC
Q 003217 496 AHSSP-VIKMAVGAGY--IFTLANHGGIRGWNVTS 527 (838)
Q Consensus 496 gH~~~-V~sla~dg~~--l~S~S~DgtIrlWdl~s 527 (838)
.|... |.+|+..++. ++++ .++.+..|--..
T Consensus 267 ~~~~v~v~dl~~hp~~~~f~~A-~~~~~~~~~~~~ 300 (307)
T KOG0316|consen 267 VVSTVIVTDLSCHPTMDDFITA-TGHGDLFWYQEN 300 (307)
T ss_pred cCCceeEEeeecccCccceeEe-cCCceeceeehh
Confidence 88887 7888877663 4444 455667776443
|
|
| >PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-22 Score=206.22 Aligned_cols=119 Identities=25% Similarity=0.296 Sum_probs=96.0
Q ss_pred ccCCCceeEEEEEEcCeEEEEEeccccCCcchH-----------HHHHHHHHHHHHhcCcCCCCCcccccccCCCceeee
Q 003217 673 AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV-----------NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQM 741 (838)
Q Consensus 673 ~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~-----------~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~ 741 (838)
.++.||.+.+|++++++.|||||+||.++.+|+ +.|.+++..|+.++.
T Consensus 64 kwSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~--------------------- 122 (356)
T PTZ00312 64 GRSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECS--------------------- 122 (356)
T ss_pred CccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHh---------------------
Confidence 378999999999999999999999999998765 457788888887631
Q ss_pred cccCCCCCCCcccCCCCcCcccEEEEeccceeeecCCChHHHHH-------Hh------hhcchHHHhhccchHHHHhc-
Q 003217 742 LRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARD-------FI------SQRCFDWLRERDQLRAEMEA- 807 (838)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~-------~i------~~~~~~~Ll~~DQL~~~~~~- 807 (838)
..+...+++|||||||||+++..+.+-.. .+ ...+|.+|+++|||.+|+++
T Consensus 123 ---------------~~~~~~~~lF~fGDfNyRld~~~~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQl~rE~~~f 187 (356)
T PTZ00312 123 ---------------AFISPSDPLFIFGDFNVRLDGHNLLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQTQGEIRRF 187 (356)
T ss_pred ---------------hccCCCCcEEEeccceeeeccccHHHHhcccccccccccccccCChHHHHHHhcChhhhHHHhhh
Confidence 12346799999999999999755432211 11 14569999999999999995
Q ss_pred ------------CCCcCCcccCCCCCCCCCcc
Q 003217 808 ------------GNVFQGMREADIKFPPTYKF 827 (838)
Q Consensus 808 ------------~~~f~gf~E~~I~F~PTYK~ 827 (838)
.+.|.++.|+||+||||||-
T Consensus 188 d~e~q~l~~~va~~s~~eLaE~pI~FpPTYkr 219 (356)
T PTZ00312 188 DLELQRLMDVVAQQSGVELAEFAIRFPPTYPR 219 (356)
T ss_pred hhhhhhhhhhhhhhcccchhcccccCCCcchh
Confidence 66778999999999999994
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=190.78 Aligned_cols=273 Identities=18% Similarity=0.228 Sum_probs=193.9
Q ss_pred eEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 135 LRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 135 ~~~l~~~~~-~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
+.++.++.+ .+++ |.|..|-+|+.-. -| ++... ..+| .++|+.|.+.+|+..|+|++.
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~g----dc------------eN~~~--lkgH-sgAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYG----DC------------ENFWV--LKGH-SGAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEeccc----cc------------cceee--eccc-cceeEeeeeccCCCEEEEecC
Confidence 445555433 4444 6799999999632 12 22222 2245 889999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
|.+|+.||+++| +.+..+++|.+-|+++.-+.-|. | .|||.|+|+||||+...+...++. .
T Consensus 111 Dk~v~~wD~~tG--------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~-------- 173 (338)
T KOG0265|consen 111 DKTVRGWDAETG--------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-N-------- 173 (338)
T ss_pred CceEEEEecccc--------eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-c--------
Confidence 999999999999 77889999999999999665564 4 599999999999997644322211 0
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (838)
...+..+.+...+..+.+|+ ++.|++||++.++.+.++.+|...+..+..++......
T Consensus 174 ---------------------kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~ll 232 (338)
T KOG0265|consen 174 ---------------------KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLL 232 (338)
T ss_pred ---------------------ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccc
Confidence 12355666777777888888 67899999999999999999988777666666555443
Q ss_pred ----ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEE
Q 003217 369 ----EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLL 443 (838)
Q Consensus 369 ----~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIr 443 (838)
+..+++|.+..- ...+.++.. ..|+.- .|. ......++||+++ +-+|+.|..+.
T Consensus 233 snsMd~tvrvwd~rp~--~p~~R~v~i-------f~g~~h---------nfe---knlL~cswsp~~~~i~ags~dr~vy 291 (338)
T KOG0265|consen 233 SNSMDNTVRVWDVRPF--APSQRCVKI-------FQGHIH---------NFE---KNLLKCSWSPNGTKITAGSADRFVY 291 (338)
T ss_pred cccccceEEEEEeccc--CCCCceEEE-------eecchh---------hhh---hhcceeeccCCCCccccccccceEE
Confidence 333333322211 111111111 111110 010 1223467899988 77899999999
Q ss_pred EEcCCC-CeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEe
Q 003217 444 QWDPNG-NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 444 lWD~~g-~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (838)
+||.++ .++..+.||...|+++.+ ....|.++++|.+|.|=.
T Consensus 292 vwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 292 VWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred EeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 999965 788999999999999976 456999999999998743
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-19 Score=188.31 Aligned_cols=264 Identities=20% Similarity=0.279 Sum_probs=189.0
Q ss_pred eeEEEEec--CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCT--EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+.++... ++.|+++ .|+.|++||+.+..... ....+ ..++.++.+.++++.|++++
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~-~~~i~~~~~~~~~~~l~~~~ 70 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR-------------------TLKGH-TGPVRDVAASADGTYLASGS 70 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE-------------------EEecC-CcceeEEEECCCCCEEEEEc
Confidence 35555544 3456654 48999999987532211 11123 56788999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCE-EEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
.||.|++|++.++ +....+.+|...|.++.|++++++ ++++.|+.|++|++.+......+.
T Consensus 71 ~~~~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------- 132 (289)
T cd00200 71 SDKTIRLWDLETG--------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR---------- 132 (289)
T ss_pred CCCeEEEEEcCcc--------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec----------
Confidence 9999999999885 456778899999999999999884 567779999999996533222111
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (838)
.+ ...+.++...+.+..+++++ ++.|++||+++++++..+..+......
T Consensus 133 ---------~~----------~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~----------- 182 (289)
T cd00200 133 ---------GH----------TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS----------- 182 (289)
T ss_pred ---------cC----------CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccce-----------
Confidence 01 33567777777777888887 789999999988887777644322111
Q ss_pred ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc------CccccCCCceEEEEEcCCCcEE-EEECCCe
Q 003217 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRTEALTTSIDGMIW-TGGANGL 441 (838)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~------g~~~~~~~~v~ala~S~dg~l~-Sgs~Dgt 441 (838)
+.+.+++...+++..++..+++.. ..+..+...+.++.+++++.++ +++.|+.
T Consensus 183 --------------------~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 242 (289)
T cd00200 183 --------------------VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242 (289)
T ss_pred --------------------EEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc
Confidence 222333333444444554444431 1233456688899999988755 5555999
Q ss_pred EEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEe
Q 003217 442 LLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 442 IrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (838)
|++||. +++.+..+..|...|.++++ ++++|++++.|+.|++||
T Consensus 243 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999 58888999999999999876 568999999999999996
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-21 Score=205.00 Aligned_cols=255 Identities=16% Similarity=0.270 Sum_probs=186.8
Q ss_pred CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003217 143 EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (838)
Q Consensus 143 ~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-~~~V~~la~s~dg~~LaSGs~DGtIrvWd~ 220 (838)
+.|.. |+|.-|++|+....... +..++.| .++|+.+.|+++++.+.+++.|+..++|++
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k~~-------------------~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEKSE-------------------LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred chhhhcchhhhhhhhhcccchhh-------------------hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 35554 67999999998532211 1122333 568999999999999999999999999999
Q ss_pred CCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeeccc
Q 003217 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (838)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 299 (838)
+.. +...+|.||++.|+++.|..... ++|||.|.|||+||+....+.-+..+..
T Consensus 249 d~~--------r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S----------------- 303 (459)
T KOG0288|consen 249 DSL--------RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS----------------- 303 (459)
T ss_pred cch--------hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc-----------------
Confidence 986 67888999999999999987654 8999999999999997654443332211
Q ss_pred ceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEe
Q 003217 300 HLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVT 378 (838)
Q Consensus 300 ~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s 378 (838)
.+..++.+ ...+.|+. |++|+.||.++..+..+...+
T Consensus 304 -------------~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g--------------------------- 341 (459)
T KOG0288|consen 304 -------------QCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG--------------------------- 341 (459)
T ss_pred -------------cccceEec--ceeeeecccccceEEEeccCCceeeEeecC---------------------------
Confidence 11111211 22334443 578999999988765443222
Q ss_pred cCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCC-CCeeeEee
Q 003217 379 SSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN-GNRLQDFQ 456 (838)
Q Consensus 379 ~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~-g~~l~tl~ 456 (838)
+.|.+|..+++|. |++++.|.++++.|+. .+..++|.
T Consensus 342 -----------------------------------------g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s 380 (459)
T KOG0288|consen 342 -----------------------------------------GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS 380 (459)
T ss_pred -----------------------------------------cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEee
Confidence 1345666777877 8888999999999994 46666665
Q ss_pred c------CCccEEEEEEcCCEEEEEeeCCeEEEEeCC-Cccccccccccc--CEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 457 Y------LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS--PVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 457 ~------H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~--~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
. |.-.--+++++++|+++||.||.|+||++. |++-..+...+. .|+++++ .|.++++++.++.+++|.
T Consensus 381 A~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 381 AEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 3 332222457899999999999999999987 788666665444 5999997 477899999999999994
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=216.02 Aligned_cols=242 Identities=16% Similarity=0.149 Sum_probs=181.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------c------------------------------------CC-
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL------L------------------------------------DS- 227 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~------~------------------------------------~~- 227 (838)
.++|+|+-||+||++||||+.||.||||.+.... + ..
T Consensus 267 ~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 267 KGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred CCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 7899999999999999999999999999976500 0 00
Q ss_pred -------CC--CcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecc
Q 003217 228 -------DD--GFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (838)
Q Consensus 228 -------~~--~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 298 (838)
.. .-++.+.|+||.+.|..|.||.++-|+|+|.|+|||||.+...+++..+
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-------------------- 406 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-------------------- 406 (712)
T ss_pred cccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE--------------------
Confidence 00 1122356789999999999999999999999999999999765543322
Q ss_pred cceeccceeeeecCCeEEEEEcCCC-CEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEE
Q 003217 299 SHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (838)
Q Consensus 299 ~~~~~~~~~~~~s~~v~~las~~~~-~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (838)
.++.-|+|+++.|.+ ..+.+|+ |+.|+||++...++..
T Consensus 407 ----------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~------------------------------ 446 (712)
T KOG0283|consen 407 ----------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD------------------------------ 446 (712)
T ss_pred ----------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe------------------------------
Confidence 226679999998854 4566777 7889999987554310
Q ss_pred EecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCCCCeee-E
Q 003217 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQ-D 454 (838)
Q Consensus 377 ~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g~~l~-t 454 (838)
|.. -..-|+++.++|||+ .+.|+-+|.+++++..|..++ .
T Consensus 447 W~D--------------------------------------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 447 WND--------------------------------------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred ehh--------------------------------------hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 111 112367889999999 689999999999999775443 2
Q ss_pred ee--cC------CccEEEEEE---cCCEEEEEeeCCeEEEEeCC-CcccccccccccC---EEE-EEeCCCEEEEEcCCC
Q 003217 455 FQ--YL------PFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP---VIK-MAVGAGYIFTLANHG 518 (838)
Q Consensus 455 l~--~H------~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~---V~s-la~dg~~l~S~S~Dg 518 (838)
+. .| ...|+.|-+ +...|++.+.|..|||+|.. .+++..|+|+.+. +.+ +..||++|+++|.|.
T Consensus 489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence 32 11 127998854 23478888999999999986 5789999987653 332 346999999999999
Q ss_pred CeeeeecCCCCC
Q 003217 519 GIRGWNVTSPGP 530 (838)
Q Consensus 519 tIrlWdl~s~~~ 530 (838)
.|.+|+...+..
T Consensus 569 ~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 569 WVYIWKNDSFNS 580 (712)
T ss_pred eEEEEeCCCCcc
Confidence 999999866443
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-20 Score=209.20 Aligned_cols=275 Identities=16% Similarity=0.168 Sum_probs=192.8
Q ss_pred CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCC
Q 003217 150 ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDD 229 (838)
Q Consensus 150 d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~ 229 (838)
.|.|++||..=..... -|-+ | .+||..+.|.|++-+++||+.|-+||||+..+.
T Consensus 30 sG~IQlWDYRM~tli~-----------------rFde--H-dGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r------ 83 (1202)
T KOG0292|consen 30 SGVIQLWDYRMGTLID-----------------RFDE--H-DGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR------ 83 (1202)
T ss_pred CceeeeehhhhhhHHh-----------------hhhc--c-CCccceeeecCCCCeEEecCCccEEEEEecccc------
Confidence 5789999975322211 1333 3 889999999999999999999999999999886
Q ss_pred CcceeEEeccccccEEEEEEecCC-CEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceee
Q 003217 230 GFGEVLSWQAHRGPVLSLCISSYG-DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSS 308 (838)
Q Consensus 230 ~~~~~~~l~gH~~~V~slafs~dG-~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~ 308 (838)
+++.+|.||-+.|..+.|.+.= .++|+|+|.|||||++.+..+.-.++ +|
T Consensus 84 --rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-------------------GH-------- 134 (1202)
T KOG0292|consen 84 --RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-------------------GH-------- 134 (1202)
T ss_pred --eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-------------------cC--------
Confidence 7889999999999999999854 48999999999999998765543333 23
Q ss_pred eecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccC-cccc--cccceeeEEEecCCCCc
Q 003217 309 ILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLL-PDFA--MEDEFKTKIVTSSKKDK 384 (838)
Q Consensus 309 ~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~-~~~~--~~~~~~~~~~s~~~~~~ 384 (838)
+..|.|..+.+....|+|++ |.||++||+.--.. +... .+..+..+..... .+.. .|.-+| .++.+ +++
T Consensus 135 --nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRk-k~~~-pg~~e~~~~~~~~~~dLfg~~DaVVK-~VLEG--HDR 207 (1202)
T KOG0292|consen 135 --NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRK-KNKA-PGSLEDQMRGQQGNSDLFGQTDAVVK-HVLEG--HDR 207 (1202)
T ss_pred --ceEEEeeccCCccceEEEecccceEEEEeecchhc-cCCC-CCCchhhhhccccchhhcCCcCeeee-eeecc--ccc
Confidence 33577777888788899988 89999999853111 1111 1111111111111 0100 111112 11222 244
Q ss_pred ceeeeeEeecCcceeeecCCcEEEEec--------cCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeE
Q 003217 385 AQSSFGFFQRSRNAIMGAADAVRRVAA--------KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQD 454 (838)
Q Consensus 385 ~~~s~~~~~~~~~~~~g~~~~v~~v~~--------~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~t 454 (838)
.+.-.+|.+.-..++.|+.|-...+|. ..++.+|...|.++.|.|... |+|.|.|++||+||+ +-..+++
T Consensus 208 GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~t 287 (1202)
T KOG0292|consen 208 GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQT 287 (1202)
T ss_pred ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceee
Confidence 444556777667778888876555443 346778999999999998655 789999999999999 5689999
Q ss_pred eecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCC
Q 003217 455 FQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 455 l~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~ 487 (838)
|.-..++-++++.. .+.+++ +.|+.+.|+-++
T Consensus 288 frrendRFW~laahP~lNLfAA-gHDsGm~VFkle 321 (1202)
T KOG0292|consen 288 FRRENDRFWILAAHPELNLFAA-GHDSGMIVFKLE 321 (1202)
T ss_pred eeccCCeEEEEEecCCcceeee-ecCCceEEEEEc
Confidence 98777777888765 455555 567778788766
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-21 Score=211.81 Aligned_cols=229 Identities=20% Similarity=0.338 Sum_probs=180.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEE-EEEec--CCCEEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLS-LCISS--YGDLWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~s-lafs~--dG~L~SgS~DgtIrvW 267 (838)
..-|..+++- ++..+++||.||++|+|+-.... .-+...+++|.+.|.. +++-+ .|+|++|+.|.+|.+|
T Consensus 14 ~~DVr~v~~~-~~~~i~s~sRd~t~~vw~~~~~~------~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 14 KSDVRAVAVT-DGVCIISGSRDGTVKVWAKKGKQ------YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF 86 (745)
T ss_pred ccchheeEec-CCeEEeecCCCCceeeeeccCcc------cccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence 5567666665 45689999999999999976531 1233568899998887 88765 3459999999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLK 346 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~ 346 (838)
.+.+......+ ++| .+.|.++....++. +.||++ .|+++|-. +++..
T Consensus 87 ~~~~~~P~~~L-------------------kgH----------~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~ 134 (745)
T KOG0301|consen 87 KLSQAEPLYTL-------------------KGH----------KSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVY 134 (745)
T ss_pred ecCCCCchhhh-------------------hcc----------ccceeeeecCCcCc-eEecccccceEEecc--hhhhc
Confidence 99765544333 333 44566666665554 788885 68999964 22211
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
+ +.+|...|.+++
T Consensus 135 ~-------------------------------------------------------------------l~gH~asVWAv~ 147 (745)
T KOG0301|consen 135 S-------------------------------------------------------------------LQGHTASVWAVA 147 (745)
T ss_pred c-------------------------------------------------------------------cCCcchheeeee
Confidence 1 224445566677
Q ss_pred EcCCCcEEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE-cCCEEEEEeeCCeEEEEeCCCcccccccccccCEEEEE
Q 003217 427 TSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA 505 (838)
Q Consensus 427 ~S~dg~l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla 505 (838)
.-|++.++|||.|++||+|.. |+++++|.+|++-|..++. ++..++|++.||.|++||+.|.++..+.||++-|++++
T Consensus 148 ~l~e~~~vTgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 148 SLPENTYVTGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSIS 226 (745)
T ss_pred ecCCCcEEeccCcceeeeccC-CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEE
Confidence 667778999999999999986 8899999999999999987 67799999999999999999999999999999999997
Q ss_pred --eCCCEEEEEcCCCCeeeeecC
Q 003217 506 --VGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 506 --~dg~~l~S~S~DgtIrlWdl~ 526 (838)
.+++.++|+|.|+++|+|+..
T Consensus 227 ~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 227 MALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ecCCCCeEEEecCCceEEEeecC
Confidence 477889999999999999954
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.6e-20 Score=210.41 Aligned_cols=248 Identities=15% Similarity=0.149 Sum_probs=169.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc-----CCCCCcceeEEeccccccEEEEEEec-CCC-EEEeeCCCcEE
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL-----DSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIK 265 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~-----~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~SgS~DgtIr 265 (838)
.|.+...++++..+++++.+..+..|+..++.. +..........+.||+++|++++|+| ++. |+|||.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 455666777777888888888888998765421 00010111234789999999999999 776 89999999999
Q ss_pred EEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCC-CEEEEeC-CCcEEEEeccCcc
Q 003217 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRE 343 (838)
Q Consensus 266 vWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~V~s~s-~~tI~lWD~~tg~ 343 (838)
+||+.+........ .. ...+.+| ...|.++++.+.+ ..+++++ |++|+|||+.+++
T Consensus 102 IWdi~~~~~~~~~~---~~---------l~~L~gH----------~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~ 159 (493)
T PTZ00421 102 GWGIPEEGLTQNIS---DP---------IVHLQGH----------TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK 159 (493)
T ss_pred EEecCCCccccccC---cc---------eEEecCC----------CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe
Confidence 99996532100000 00 0112223 4567888888764 5777776 6899999999887
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceE
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (838)
.+..+.. |...|.
T Consensus 160 ~~~~l~~-------------------------------------------------------------------h~~~V~ 172 (493)
T PTZ00421 160 AVEVIKC-------------------------------------------------------------------HSDQIT 172 (493)
T ss_pred EEEEEcC-------------------------------------------------------------------CCCceE
Confidence 6544322 223356
Q ss_pred EEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEE-EE--EEcCCEEEEEe----eCCeEEEEeCC--Ccccc
Q 003217 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ-CL--CTFGSQIWVGY----MNGIVQVLDLE--GNLLG 492 (838)
Q Consensus 424 ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~-sl--s~dG~~LasGs----~DgtIrlWD~~--g~~i~ 492 (838)
+++++++|. |++|+.|++|++||+ +++.+.++.+|.+.+. .+ ..++.+|++++ .|++|+|||+. .+++.
T Consensus 173 sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 173 SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 788888887 789999999999999 7899999999987543 22 23556666543 48999999986 34455
Q ss_pred ccccccc-CEEEEE--eCCCEEEEEc-CCCCeeeeecCCCC
Q 003217 493 GWVAHSS-PVIKMA--VGAGYIFTLA-NHGGIRGWNVTSPG 529 (838)
Q Consensus 493 ~l~gH~~-~V~sla--~dg~~l~S~S-~DgtIrlWdl~s~~ 529 (838)
....|.. .+.... .+++.+++++ .|++||+|++....
T Consensus 253 ~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 253 TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 4444443 333333 4778888887 59999999987643
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-19 Score=209.18 Aligned_cols=228 Identities=14% Similarity=0.128 Sum_probs=156.0
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvW 267 (838)
.++|.+++|+|+ +.+|+||+.||+|++||+.++.............+.+|.+.|++|+|+|++. |+|||.|++|+||
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence 789999999996 7899999999999999997641000000123446789999999999999986 4799999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
|+.++.....+. + ...+.++++++++..+++++ +++|+|||+++++++.
T Consensus 154 Dl~tg~~~~~i~--------------------~----------~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 154 DIENEKRAFQIN--------------------M----------PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred ECCCCcEEEEEe--------------------c----------CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 997654322211 0 23467788888888888765 6799999999999887
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
++.+|..... .+ .+....
T Consensus 204 tl~gH~g~~~-------------------------------------------------s~-------------~v~~~~ 221 (568)
T PTZ00420 204 SFHIHDGGKN-------------------------------------------------TK-------------NIWIDG 221 (568)
T ss_pred EEecccCCce-------------------------------------------------eE-------------EEEeee
Confidence 7765432100 00 001122
Q ss_pred EcCCC-cEEEEECCC----eEEEEcCC--CCeeeEeecCC--ccEEEEE-E-cCCEEEEEeeCCeEEEEeCCCc---ccc
Q 003217 427 TSIDG-MIWTGGANG----LLLQWDPN--GNRLQDFQYLP--FAVQCLC-T-FGSQIWVGYMNGIVQVLDLEGN---LLG 492 (838)
Q Consensus 427 ~S~dg-~l~Sgs~Dg----tIrlWD~~--g~~l~tl~~H~--~~V~sls-~-dG~~LasGs~DgtIrlWD~~g~---~i~ 492 (838)
+++++ .|++++.|+ +|+|||+. ++++.++..+. +.+..+. . +|.++++|+.|++|++|++... .+.
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence 44554 477777663 79999994 57777665433 3333332 2 4779999999999999998633 233
Q ss_pred cccccccCEEEEEeCCCEE
Q 003217 493 GWVAHSSPVIKMAVGAGYI 511 (838)
Q Consensus 493 ~l~gH~~~V~sla~dg~~l 511 (838)
.+. |..++.++++-++..
T Consensus 302 ~~~-s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 302 EYK-SCSPFRSFGFLPKQI 319 (568)
T ss_pred ccc-cCCCccceEEccccc
Confidence 433 566777777655443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-19 Score=208.05 Aligned_cols=223 Identities=17% Similarity=0.164 Sum_probs=158.5
Q ss_pred EEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC-CC-EEEeeCCCcEEEEECCCcceeeecCCCceee
Q 003217 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (838)
Q Consensus 208 SGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~ 285 (838)
.|+.++.|++|+.... .....+.||.++|.+++|+|+ +. |+|||.|++|||||+.+.........+ ..
T Consensus 49 gGG~~gvI~L~~~~r~--------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~--p~ 118 (568)
T PTZ00420 49 GGGLIGAIRLENQMRK--------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKD--PQ 118 (568)
T ss_pred CCCceeEEEeeecCCC--------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccccc--ce
Confidence 3778899999998764 467789999999999999997 55 789999999999999653211000000 00
Q ss_pred eEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCE-EEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccC
Q 003217 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAK-VWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (838)
Q Consensus 286 ~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~-V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~ 363 (838)
..+.+| ...|.++++++.+.. +++++ |++|+|||+++++.+..+..
T Consensus 119 ---------~~L~gH----------~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~------------- 166 (568)
T PTZ00420 119 ---------CILKGH----------KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM------------- 166 (568)
T ss_pred ---------EEeecC----------CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec-------------
Confidence 011222 456888888887765 45655 78999999998765432210
Q ss_pred cccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeE
Q 003217 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLL 442 (838)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtI 442 (838)
...|.+++|+++|. |++++.|++|
T Consensus 167 -------------------------------------------------------~~~V~SlswspdG~lLat~s~D~~I 191 (568)
T PTZ00420 167 -------------------------------------------------------PKKLSSLKWNIKGNLLSGTCVGKHM 191 (568)
T ss_pred -------------------------------------------------------CCcEEEEEECCCCCEEEEEecCCEE
Confidence 11245678899988 5677889999
Q ss_pred EEEcC-CCCeeeEeecCCccEEE--EE-----EcCCEEEEEeeC----CeEEEEeCC--Cccccccccc--ccCEEEEE-
Q 003217 443 LQWDP-NGNRLQDFQYLPFAVQC--LC-----TFGSQIWVGYMN----GIVQVLDLE--GNLLGGWVAH--SSPVIKMA- 505 (838)
Q Consensus 443 rlWD~-~g~~l~tl~~H~~~V~s--ls-----~dG~~LasGs~D----gtIrlWD~~--g~~i~~l~gH--~~~V~sla- 505 (838)
++||+ ++++++++.+|.+.+.+ +. .++.+|++++.| ++|+|||+. ++++..+..+ .+.+....
T Consensus 192 rIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D 271 (568)
T PTZ00420 192 HIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYD 271 (568)
T ss_pred EEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeee
Confidence 99999 78999999999886543 22 467789988876 489999987 4566554433 33333332
Q ss_pred e-CCCEEEEEcCCCCeeeeecCC
Q 003217 506 V-GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 506 ~-dg~~l~S~S~DgtIrlWdl~s 527 (838)
. ++.++++|+.|++||+|++..
T Consensus 272 ~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 272 ESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CCCCCEEEEEECCCeEEEEEccC
Confidence 2 477889999999999999854
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=208.89 Aligned_cols=275 Identities=17% Similarity=0.272 Sum_probs=195.5
Q ss_pred EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCcee--eecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003217 144 QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE--SVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (838)
Q Consensus 144 ~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~ 220 (838)
.|++ |.|+.||+|+...-.. +...|+.. ..| ..+|..++.-.+|+.|+|+|.|-+|++|+.
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~---------------~~s~~~~asme~H-sDWVNDiiL~~~~~tlIS~SsDtTVK~W~~ 102 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSN---------------EPSTPYIASMEHH-SDWVNDIILCGNGKTLISASSDTTVKVWNA 102 (735)
T ss_pred eEEecCCCceEEEeccccccC---------------Ccccchhhhhhhh-HhHHhhHHhhcCCCceEEecCCceEEEeec
Confidence 4777 5699999999854322 11122111 123 789999998889999999999999999998
Q ss_pred CCCccCCCCCcceeEEeccccccEEEEEE-ecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecc
Q 003217 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCI-SSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (838)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slaf-s~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 298 (838)
..+. .-+..++.-|+..|.+|+. -++.. ++||+-|+.|.|||+.++...+......
T Consensus 103 ~~~~------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~---------------- 160 (735)
T KOG0308|consen 103 HKDN------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN---------------- 160 (735)
T ss_pred ccCc------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc----------------
Confidence 7751 1245667889999999999 66665 5799999999999998764322211110
Q ss_pred cceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEE
Q 003217 299 SHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIV 377 (838)
Q Consensus 299 ~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 377 (838)
.+.....+-+...+.+++..+.+..+++|+ .+-+++||.+|++.+-.|.
T Consensus 161 --~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr---------------------------- 210 (735)
T KOG0308|consen 161 --VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR---------------------------- 210 (735)
T ss_pred --cccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee----------------------------
Confidence 011111111244567777777666777766 3679999999876533222
Q ss_pred ecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEe
Q 003217 378 TSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF 455 (838)
Q Consensus 378 s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl 455 (838)
+|...|.+|..++||+ ++|+|.||+||+||+ ..+|+.++
T Consensus 211 ---------------------------------------GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 211 ---------------------------------------GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY 251 (735)
T ss_pred ---------------------------------------ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence 3444456777888986 999999999999999 68999999
Q ss_pred ecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCCC--cccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecC
Q 003217 456 QYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEG--NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 456 ~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~g--~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~ 526 (838)
..|...|+++..+ =+++++|+.||.|..=|+.. ++...+ -...+|..+.. +.+.++.+.+|+.|+.|...
T Consensus 252 ~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic-k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 252 IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC-KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred EeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee-cCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 9999999999664 45999999999999999864 222222 23345655542 34556788899999999854
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-20 Score=188.62 Aligned_cols=289 Identities=17% Similarity=0.234 Sum_probs=201.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCE-EEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~ 269 (838)
...|+-++.+....++.|+|.|.+.++|.+++| .++.+..||.+.|++|.|++.+.| ++||.|++..||..
T Consensus 148 kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg--------~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 148 KDGIWHVAADSTQPICGTASADHTARIWSLESG--------ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ccceeeehhhcCCcceeecccccceeEEeeccc--------cceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 668999999887789999999999999999998 788999999999999999999985 79999999999983
Q ss_pred CC----cc----eeeecCCCceeee----E----EEEee-----ceeecccceeccceeeeecCCeEEEEEcCCCCEEEE
Q 003217 270 EA----IE----KALSLKPEERHTA----A----LIVER-----SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS 328 (838)
Q Consensus 270 ~~----~~----~~~~~~~~~~~~~----~----~~~~~-----s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s 328 (838)
.- -. ...+...+..+.. . ...+. .+..+.+| ..-|.+.---.++..+.+
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH----------~~vV~a~dWL~gg~Q~vT 289 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH----------RAVVSACDWLAGGQQMVT 289 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc----------ccceEehhhhcCcceeee
Confidence 21 00 0011000000000 0 00000 00111111 011111111124567777
Q ss_pred eCC-CcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEE
Q 003217 329 AGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVR 407 (838)
Q Consensus 329 ~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~ 407 (838)
+++ .|..+||++||+++..|.+|.+..+... ..+..+.+++.+.|..+
T Consensus 290 aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcs-------------------------------tHptQrLVvTsSrDtTF 338 (481)
T KOG0300|consen 290 ASWDRTANLWDVETGEVVNILTGHDSELTHCS-------------------------------THPTQRLVVTSSRDTTF 338 (481)
T ss_pred eeccccceeeeeccCceeccccCcchhccccc-------------------------------cCCcceEEEEeccCcee
Confidence 885 6899999999999999988865321111 11112233445556666
Q ss_pred EEec-------cCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-C-CCeeeEeecCCccEEEEEE--cCCEEEEEe
Q 003217 408 RVAA-------KGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCT--FGSQIWVGY 476 (838)
Q Consensus 408 ~v~~-------~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~-g~~l~tl~~H~~~V~sls~--dG~~LasGs 476 (838)
|+|. -..|.+|...|.++.|.-|.+++|||.|.|||+||+ + ...+.++.. .++++-++. .+..|+.--
T Consensus 339 RLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPh 417 (481)
T KOG0300|consen 339 RLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPH 417 (481)
T ss_pred EeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEecc
Confidence 6664 235788999999999999999999999999999999 4 356777765 556776655 456888888
Q ss_pred eCCeEEEEeCCCcccc-----cccccccCEEEEEeCC----CEEEEEcCCCCeeeeecCCCC
Q 003217 477 MNGIVQVLDLEGNLLG-----GWVAHSSPVIKMAVGA----GYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 477 ~DgtIrlWD~~g~~i~-----~l~gH~~~V~sla~dg----~~l~S~S~DgtIrlWdl~s~~ 529 (838)
..+.|||+|++|+.+. .-.||.-.|.|.++-. ..|+|++-|..+--|++..|.
T Consensus 418 DNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 418 DNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred CCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 8899999999986443 4469999999998632 358899999999999987654
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.1e-19 Score=183.23 Aligned_cols=296 Identities=14% Similarity=0.165 Sum_probs=198.6
Q ss_pred eEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 135 LRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 135 ~~~l~~~~~-~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
+.+++.+.+ .|.+ |.|.--.||++.++.... .-..| ..+|.|+.|+.+|.+||||..
T Consensus 67 vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~-------------------eltgH-KDSVt~~~FshdgtlLATGdm 126 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG-------------------ELTGH-KDSVTCCSFSHDGTLLATGDM 126 (399)
T ss_pred eEEEEeCCCCceEEecCCCceEEEEEccCCccee-------------------EecCC-CCceEEEEEccCceEEEecCC
Confidence 334444423 4443 568899999997654221 11233 779999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
+|.|+||++.++ .....+.+--+.+-=|.+.|-+. |+.|+.||.|-+|.+..+.....+.
T Consensus 127 sG~v~v~~~stg--------~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~----------- 187 (399)
T KOG0296|consen 127 SGKVLVFKVSTG--------GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS----------- 187 (399)
T ss_pred CccEEEEEcccC--------ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-----------
Confidence 999999999997 45555554556677788999888 6899999999999996632221111
Q ss_pred eeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEE-eeecccCccccc
Q 003217 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIEN-RVDMSLLPDFAM 368 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~-~~~~s~~~~~~~ 368 (838)
+| +..+.+=.+.++|.++.++. +++|++||..||+++..+....+.+. ...+.......+
T Consensus 188 --------Gh----------~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~ 249 (399)
T KOG0296|consen 188 --------GH----------NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLT 249 (399)
T ss_pred --------CC----------CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeE
Confidence 12 22333334556788888876 57999999999999988764332110 111111111111
Q ss_pred ----c--------cceeeEEEecC-------CCCcceeeeeEeec---CcceeeecCCcEEEEeccC-----ccccCCCc
Q 003217 369 ----E--------DEFKTKIVTSS-------KKDKAQSSFGFFQR---SRNAIMGAADAVRRVAAKG-----GFGDDNRR 421 (838)
Q Consensus 369 ----~--------~~~~~~~~s~~-------~~~~~~~s~~~~~~---~~~~~~g~~~~v~~v~~~g-----~~~~~~~~ 421 (838)
+ ..-|+...... ..+....++.+.+. -..+..|.-+|...++... ....|...
T Consensus 250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~ 329 (399)
T KOG0296|consen 250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG 329 (399)
T ss_pred eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCc
Confidence 0 01111111110 00111112333322 2455678888877776522 22356777
Q ss_pred eEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC
Q 003217 422 TEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 422 v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (838)
|..+.|-+...|++++.||+|++||. +|+++.++.||...|++++ +++++++++|.|++.+|+++.
T Consensus 330 V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 330 VTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999988778999999999999999 8999999999999999885 578899999999999999863
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.1e-19 Score=201.91 Aligned_cols=224 Identities=13% Similarity=0.166 Sum_probs=153.7
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC-C-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvW 267 (838)
.++|.+++|+| ++++|+||+.||+|++||+.++.. .......+..+.+|...|.+|+|+|++ . |+||+.|++|+||
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~-~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGL-TQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcc-ccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 88999999999 889999999999999999976410 001113456789999999999999986 3 7899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
|++++.....+. +| ...+.++++++++..+++++ |++|++||+++++++.
T Consensus 154 Dl~tg~~~~~l~-------------------~h----------~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 154 DVERGKAVEVIK-------------------CH----------SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS 204 (493)
T ss_pred ECCCCeEEEEEc-------------------CC----------CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE
Confidence 997654322211 12 34577888888888888877 6799999999998877
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
.+..|.... +..+.
T Consensus 205 tl~~H~~~~------------------------------------------------------------------~~~~~ 218 (493)
T PTZ00421 205 SVEAHASAK------------------------------------------------------------------SQRCL 218 (493)
T ss_pred EEecCCCCc------------------------------------------------------------------ceEEE
Confidence 665443210 00011
Q ss_pred EcCC-CcEEEE----ECCCeEEEEcC-CC-CeeeEeecCCc-cEEEE--EEcCCEEEEEee-CCeEEEEeCC-Ccccccc
Q 003217 427 TSID-GMIWTG----GANGLLLQWDP-NG-NRLQDFQYLPF-AVQCL--CTFGSQIWVGYM-NGIVQVLDLE-GNLLGGW 494 (838)
Q Consensus 427 ~S~d-g~l~Sg----s~DgtIrlWD~-~g-~~l~tl~~H~~-~V~sl--s~dG~~LasGs~-DgtIrlWD~~-g~~i~~l 494 (838)
+.++ +.++++ +.|++|++||+ +. +++.....+.. .+... .+++.+|++|+. |++|++||+. ++++..+
T Consensus 219 w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 219 WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 2222 234433 35899999999 43 45555544443 33333 347888988885 9999999987 5654444
Q ss_pred cc-cccCEEEEEeCCCE
Q 003217 495 VA-HSSPVIKMAVGAGY 510 (838)
Q Consensus 495 ~g-H~~~V~sla~dg~~ 510 (838)
.. +..++.++++-+++
T Consensus 299 ~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 299 SYSSVEPHKGLCMMPKW 315 (493)
T ss_pred eccCCCCCcceEecccc
Confidence 32 44556666654443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-19 Score=184.02 Aligned_cols=232 Identities=19% Similarity=0.233 Sum_probs=162.3
Q ss_pred ceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC---CEEEeeC
Q 003217 184 FKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG---DLWSGSE 260 (838)
Q Consensus 184 ~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG---~L~SgS~ 260 (838)
|..+-| .+++.|||++ +.++||||.|-+|+++|+... .+...+..|.+.|+++.|.++- .|+||++
T Consensus 37 F~~~aH-~~sitavAVs--~~~~aSGssDetI~IYDm~k~--------~qlg~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 37 FAFSAH-AGSITALAVS--GPYVASGSSDETIHIYDMRKR--------KQLGILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred cccccc-ccceeEEEec--ceeEeccCCCCcEEEEeccch--------hhhcceeccccceEEEEecCCcchhheeeecC
Confidence 444455 8899999996 799999999999999999986 6677788999999999999876 5999999
Q ss_pred CCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEec
Q 003217 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDA 339 (838)
Q Consensus 261 DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~ 339 (838)
||.|.+|++..-+..-+ +++| ...|+.++..|++....+.+ |+.+++||+
T Consensus 106 DG~i~iw~~~~W~~~~s-------------------lK~H----------~~~Vt~lsiHPS~KLALsVg~D~~lr~WNL 156 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKS-------------------LKAH----------KGQVTDLSIHPSGKLALSVGGDQVLRTWNL 156 (362)
T ss_pred CCcEEEEEcCCeEEeee-------------------eccc----------ccccceeEecCCCceEEEEcCCceeeeehh
Confidence 99999999854322111 2233 44577788887777655554 789999999
Q ss_pred cCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cCc--c
Q 003217 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGG--F 415 (838)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~--~ 415 (838)
-+|+.-.++...... . .+.|.+.+.+-.+...+.+-.+.. ..- .
T Consensus 157 V~Gr~a~v~~L~~~a-t-------------------------------~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~ 204 (362)
T KOG0294|consen 157 VRGRVAFVLNLKNKA-T-------------------------------LVSWSPQGDHFVVSGRNKIDIYQLDNASVFRE 204 (362)
T ss_pred hcCccceeeccCCcc-e-------------------------------eeEEcCCCCEEEEEeccEEEEEecccHhHhhh
Confidence 988764443321110 0 122333333333333333222211 000 1
Q ss_pred ccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE----cCCEEEEEeeCCeEEEEeCC
Q 003217 416 GDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT----FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 416 ~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~----dG~~LasGs~DgtIrlWD~~ 487 (838)
.....++.++.|-..+.|++|.+|+.|++||. .+.++..|.+|.++|..+.+ ++.+|+++++||.|++||++
T Consensus 205 i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 205 IENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred hhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 12234566666777777888888889999998 47888888899999888863 35688999999999999876
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.5e-20 Score=182.91 Aligned_cols=267 Identities=20% Similarity=0.239 Sum_probs=183.7
Q ss_pred CCceeeecCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCE-EE
Q 003217 182 APFKESVKGVSSVMCMVGDE---ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WS 257 (838)
Q Consensus 182 ~p~~~~~~g~~~V~~la~s~---dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~S 257 (838)
.|+.-+.| +.||..|+|+| +|-.|.|+++||.-.+-+-++| .=+-+|.||+++|++.++..+... +|
T Consensus 6 ~pl~c~gh-trpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg--------dwigtfeghkgavw~~~l~~na~~aas 76 (334)
T KOG0278|consen 6 TPLTCHGH-TRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG--------DWIGTFEGHKGAVWSATLNKNATRAAS 76 (334)
T ss_pred CceEEcCC-CcceeEEeccCCCCCceEEEEeccCCCchhccCCCC--------CcEEeeeccCcceeeeecCchhhhhhh
Confidence 35555566 89999999985 8999999999998888777777 568899999999999999988764 69
Q ss_pred eeCCCcEEEEECCCcceeeecCCCceeeeEEEEee--ceeecccceeccce------------eeeecCCeEEEEEcCCC
Q 003217 258 GSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER--SYIDLRSHLSVNGF------------SSILTSDIKNLLSDHSR 323 (838)
Q Consensus 258 gS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~--s~~~l~~~~~~~~~------------~~~~s~~v~~las~~~~ 323 (838)
++.|-|.||||.-++....++.. ..-+.++..++ ..+..-++.....+ -.-++..++.+...+.+
T Consensus 77 aaadftakvw~a~tgdelhsf~h-khivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD 155 (334)
T KOG0278|consen 77 AAADFTAKVWDAVTGDELHSFEH-KHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHED 155 (334)
T ss_pred hcccchhhhhhhhhhhhhhhhhh-hheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccC
Confidence 99999999999877654333311 11111111111 00000000000000 00013445555555555
Q ss_pred CEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeec
Q 003217 324 AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA 402 (838)
Q Consensus 324 ~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~ 402 (838)
..+.|+. +++||+||.+||..+++|.-
T Consensus 156 ~~iLSSadd~tVRLWD~rTgt~v~sL~~---------------------------------------------------- 183 (334)
T KOG0278|consen 156 KCILSSADDKTVRLWDHRTGTEVQSLEF---------------------------------------------------- 183 (334)
T ss_pred ceEEeeccCCceEEEEeccCcEEEEEec----------------------------------------------------
Confidence 5555544 46777777777666554431
Q ss_pred CCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEE--EEEcCCEEEEEeeCC
Q 003217 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQC--LCTFGSQIWVGYMNG 479 (838)
Q Consensus 403 ~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~s--ls~dG~~LasGs~Dg 479 (838)
...|.++.+++||.+++-...++|+.||. +-..++.+.. ...|.+ |.+....+++|+.|.
T Consensus 184 ----------------~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~ 246 (334)
T KOG0278|consen 184 ----------------NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDF 246 (334)
T ss_pred ----------------CCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcce
Confidence 12344566788999888777778999999 5577777664 334554 456667899999999
Q ss_pred eEEEEeCC-Ccccccc-cccccCEEEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 480 IVQVLDLE-GNLLGGW-VAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 480 tIrlWD~~-g~~i~~l-~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
.++.+|-. |.-+..+ +||.++|.+|. +||..-+|||.|||||+|....
T Consensus 247 ~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 247 KVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred EEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 99999976 7777775 99999999997 5888899999999999999654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-19 Score=177.09 Aligned_cols=233 Identities=15% Similarity=0.232 Sum_probs=167.4
Q ss_pred ceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeee
Q 003217 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (838)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~ 310 (838)
+....+..|+++|.++.|.-||+ .++++.|+|||+|+...+....++.. |
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-------------------h---------- 58 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-------------------H---------- 58 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecC-------------------C----------
Confidence 45667889999999999999999 57999999999999866543333322 2
Q ss_pred cCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeee
Q 003217 311 TSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSF 389 (838)
Q Consensus 311 s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~ 389 (838)
-.+|..++.+.+..++++++ |+.+.+||+.||+.++.|.+|..-++.+.+...
T Consensus 59 G~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNee-------------------------- 112 (307)
T KOG0316|consen 59 GHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEE-------------------------- 112 (307)
T ss_pred CceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCc--------------------------
Confidence 22455566666777777765 678999999999999999988765554444221
Q ss_pred eEeecCcceeeecCCcEEEEec-c-------CccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCc
Q 003217 390 GFFQRSRNAIMGAADAVRRVAA-K-------GGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPF 460 (838)
Q Consensus 390 ~~~~~~~~~~~g~~~~v~~v~~-~-------g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~ 460 (838)
+..++.|+-|...|+|. . ..+.+....|.++.++ +-.|+.||.||++|.+|+ .|+....+-+ .
T Consensus 113 -----sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~-~heIvaGS~DGtvRtydiR~G~l~sDy~g--~ 184 (307)
T KOG0316|consen 113 -----SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA-EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--H 184 (307)
T ss_pred -----ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec-ccEEEeeccCCcEEEEEeecceeehhhcC--C
Confidence 11122233333333332 0 0111222334444432 234899999999999999 7987776666 4
Q ss_pred cEEEEE--EcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEE----eCCCEEEEEcCCCCeeeeecCC
Q 003217 461 AVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA----VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 461 ~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla----~dg~~l~S~S~DgtIrlWdl~s 527 (838)
+|+|++ .||+...+++.|++|+|.|-+ |+++++.+||.+.=..+. .....++|||.||.|.+||+..
T Consensus 185 pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 185 PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 677775 489999999999999999987 899999999998877664 3567899999999999999754
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-19 Score=179.16 Aligned_cols=230 Identities=17% Similarity=0.199 Sum_probs=168.2
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvW 267 (838)
...++.|++++.. ..+++++-||++|+||+.... .++..|+.|...|.++-+++-.+ ++++|+|+|||+|
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s-------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS-------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLW 132 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCC-------cchhHHHhhhhheEEeccccccceeEEeeccCCceEee
Confidence 4578999999854 678899999999999965432 67888999999999999988543 6788999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcEEEEeccC-ccE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDART-REL 344 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI~lWD~~t-g~~ 344 (838)
+........++..+. .-|...++++ ....+++++ |+++++||++. |+.
T Consensus 133 ~~~r~~Sv~Tf~gh~-----------------------------~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~ 183 (311)
T KOG0277|consen 133 DPNRPNSVQTFNGHN-----------------------------SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF 183 (311)
T ss_pred cCCCCcceEeecCCc-----------------------------cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce
Confidence 986533222222211 1122233333 344555555 68999999864 332
Q ss_pred EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEE
Q 003217 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (838)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (838)
+. +..|. ..+.+
T Consensus 184 ~~-i~ah~-------------------------------------------------------------------~Eil~ 195 (311)
T KOG0277|consen 184 MS-IEAHN-------------------------------------------------------------------SEILC 195 (311)
T ss_pred eE-EEecc-------------------------------------------------------------------ceeEe
Confidence 21 22221 01111
Q ss_pred EEEc--CCCcEEEEECCCeEEEEcC-C-CCeeeEeecCCccEEEEEEc---CCEEEEEeeCCeEEEEeCC-C-ccccccc
Q 003217 425 LTTS--IDGMIWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE-G-NLLGGWV 495 (838)
Q Consensus 425 la~S--~dg~l~Sgs~DgtIrlWD~-~-g~~l~tl~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~-g-~~i~~l~ 495 (838)
.-++ .+..+++|+.|+.||.||+ + ...+..+.+|.-+|..|.+. -..|++++.|-|+||||.+ + .++.+..
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~ 275 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD 275 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh
Confidence 1111 1224789999999999999 4 46788889999999999764 3589999999999999987 3 4788888
Q ss_pred ccccCEEEEE---eCCCEEEEEcCCCCeeeee
Q 003217 496 AHSSPVIKMA---VGAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 496 gH~~~V~sla---~dg~~l~S~S~DgtIrlWd 524 (838)
-|+.-|..+. +++.++++.+.|..+.+|+
T Consensus 276 ~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 276 HHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ccceEEeccccccccCceeeecccccceeeec
Confidence 9999999886 3789999999999999998
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-20 Score=191.81 Aligned_cols=272 Identities=16% Similarity=0.308 Sum_probs=169.8
Q ss_pred CCceeeecC-CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEee
Q 003217 182 APFKESVKG-VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS 259 (838)
Q Consensus 182 ~p~~~~~~g-~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS 259 (838)
.||...+.| ...|.|++-+|.. ..++||+.||.|++||+... .+..+|++|.+.|..|+++. +.++|++
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR--------~~~~~f~AH~G~V~Gi~v~~-~~~~tvg 126 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR--------ECIRTFKAHEGLVRGICVTQ-TSFFTVG 126 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh--------hhhheeecccCceeeEEecc-cceEEec
Confidence 455555544 7789999999976 78999999999999999986 67889999999999999998 6689999
Q ss_pred CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEec
Q 003217 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA 339 (838)
Q Consensus 260 ~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~ 339 (838)
+|+|||.|..+.. ..-++.. +..+.++..+ ..+...+++ ...|.|||.
T Consensus 127 dDKtvK~wk~~~~-p~~tilg----------~s~~~gIdh~--------------------~~~~~FaTc-Ge~i~IWD~ 174 (433)
T KOG0268|consen 127 DDKTVKQWKIDGP-PLHTILG----------KSVYLGIDHH--------------------RKNSVFATC-GEQIDIWDE 174 (433)
T ss_pred CCcceeeeeccCC-cceeeec----------cccccccccc--------------------ccccccccc-Cceeeeccc
Confidence 9999999997541 1111100 0000011000 011111111 134556666
Q ss_pred cCccEEEEEe-cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc-C-ccc
Q 003217 340 RTRELLKVFN-IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-G-GFG 416 (838)
Q Consensus 340 ~tg~~l~~l~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~-g-~~~ 416 (838)
....+++.++ +-..+ .++.+.+..... +. ..++..++..+... + .+.
T Consensus 175 ~R~~Pv~smswG~Dti-~svkfNpvETsI---------La--------------------s~~sDrsIvLyD~R~~~Pl~ 224 (433)
T KOG0268|consen 175 QRDNPVSSMSWGADSI-SSVKFNPVETSI---------LA--------------------SCASDRSIVLYDLRQASPLK 224 (433)
T ss_pred ccCCccceeecCCCce-eEEecCCCcchh---------ee--------------------eeccCCceEEEecccCCccc
Confidence 5555544432 11111 001111100000 00 00000111111100 0 000
Q ss_pred --cCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-C-CCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-C
Q 003217 417 --DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-G 488 (838)
Q Consensus 417 --~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~-g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g 488 (838)
--.-+...++++|++. +.+|++|..+..+|+ . ...++.+.+|.++|+++.+ .|+-+++||.|.+|||+.+. +
T Consensus 225 KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 225 KVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred eeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence 0011234577888766 688999999999999 3 4788999999999999854 69999999999999999986 4
Q ss_pred cccccccccc---cCEEEEE--eCCCEEEEEcCCCCeeeeecC
Q 003217 489 NLLGGWVAHS---SPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 489 ~~i~~l~gH~---~~V~sla--~dg~~l~S~S~DgtIrlWdl~ 526 (838)
.-.... |+ ..|.+|. .|.++++|||.|+.||+|...
T Consensus 305 ~SRdiY--htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 305 HSRDIY--HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred cchhhh--hHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 322111 22 2478886 489999999999999999854
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-19 Score=181.46 Aligned_cols=278 Identities=14% Similarity=0.142 Sum_probs=199.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----------cCCCCCcceeEEeccccccEEEEEEecCCC-EEEee
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL----------LDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS 259 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~----------~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS 259 (838)
.+++.|.+|++||.++||||.|-.||+.|++.-. .+.......+++|-.|...|+.+.|.|... |+|||
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s 191 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS 191 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEecc
Confidence 8899999999999999999999999999987211 011122344678889999999999999887 78999
Q ss_pred CCCcEEEEECCCc--ceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEE
Q 003217 260 EGGGIKIWPWEAI--EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFAL 336 (838)
Q Consensus 260 ~DgtIrvWd~~~~--~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~l 336 (838)
.|+|||++|.... ++.++... ....++++.+.+.|..|..|.+ -+++|
T Consensus 192 rD~tvKlFDfsK~saKrA~K~~q-----------------------------d~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 192 RDNTVKLFDFSKTSAKRAFKVFQ-----------------------------DTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred CCCeEEEEecccHHHHHHHHHhh-----------------------------ccceeeeEeecCCCceEEEecCCCceeE
Confidence 9999999998531 11121111 1346888999999999999887 58999
Q ss_pred EeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC-
Q 003217 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG- 413 (838)
Q Consensus 337 WD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g- 413 (838)
||+.|-+|.-.-.++.| ...++..+.++..+..-++|+.||.+++|. .+
T Consensus 243 Ydv~T~QcfvsanPd~q----------------------------ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r 294 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQ----------------------------HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR 294 (430)
T ss_pred EeccceeEeeecCcccc----------------------------cccceeEEEecCCccEEEEeccCCcEEeeccccHH
Confidence 99999887433222211 112233455555566667888899888886 12
Q ss_pred ---cccc--CCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCC--ccE----EEEEE-cCCEEEEEee-C
Q 003217 414 ---GFGD--DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLP--FAV----QCLCT-FGSQIWVGYM-N 478 (838)
Q Consensus 414 ---~~~~--~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~--~~V----~sls~-dG~~LasGs~-D 478 (838)
++.. ....|.+..|+.+|+ |+|.+.|.+|++|.+ +|+++++++|-. +.+ .++.- ...++..-.+ .
T Consensus 295 Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas 374 (430)
T KOG0640|consen 295 CVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS 374 (430)
T ss_pred HHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccccc
Confidence 2221 334677788999998 889999999999999 899999998631 111 12222 2346666553 6
Q ss_pred CeEEEEeCCC-cccccc-cccccCEEEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 479 GIVQVLDLEG-NLLGGW-VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 479 gtIrlWD~~g-~~i~~l-~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
+.+.-||... ..+..| .||++.|..|.. .+-.++++|.|-.+|.|--
T Consensus 375 ~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 375 NSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred CceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 7888999873 223322 489999999874 4557899999999999973
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-17 Score=162.53 Aligned_cols=294 Identities=19% Similarity=0.270 Sum_probs=204.3
Q ss_pred CCccccCceeEEEEecCC-EEEE-ec-CCCEEEEeCCCCccccccccccccCCCCCCCC-CC----ceeeecCCCCeEEE
Q 003217 126 LRETQIGCFLRTIVCTEE-QLWA-GG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGT-AP----FKESVKGVSSVMCM 197 (838)
Q Consensus 126 ~~~~~~~~~~~~l~~~~~-~l~~-g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~-~p----~~~~~~g~~~V~~l 197 (838)
|.++| .+|+++.+.. .||+ |+ ..++||........ .|++.+.. .| ++..-|+.++|+|.
T Consensus 29 l~dsq---airav~fhp~g~lyavgsnskt~ric~yp~l~~----------~r~~hea~~~pp~v~~kr~khhkgsiyc~ 95 (350)
T KOG0641|consen 29 LEDSQ---AIRAVAFHPAGGLYAVGSNSKTFRICAYPALID----------LRHAHEAAKQPPSVLCKRNKHHKGSIYCT 95 (350)
T ss_pred ecchh---heeeEEecCCCceEEeccCCceEEEEccccccC----------cccccccccCCCeEEeeeccccCccEEEE
Confidence 44555 6888888744 8887 54 45999975432111 23332221 12 33333448899999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC----C-EEEee-CCCcEEEEECCC
Q 003217 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG----D-LWSGS-EGGGIKIWPWEA 271 (838)
Q Consensus 198 a~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG----~-L~SgS-~DgtIrvWd~~~ 271 (838)
+|+|+|++|++||.|.+|++-..+...| +....-+.|.-|.+.|..|+|-.+. . |+||+ .|..|.+=|..+
T Consensus 96 ~ws~~geliatgsndk~ik~l~fn~dt~---~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~ 172 (350)
T KOG0641|consen 96 AWSPCGELIATGSNDKTIKVLPFNADTC---NATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR 172 (350)
T ss_pred EecCccCeEEecCCCceEEEEecccccc---cccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence 9999999999999999999987765421 1122335567799999999997652 3 56654 466666656544
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEec
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI 350 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~ 350 (838)
++....+.. | ++.+..+.+- .+..+++++ |+||+.||++-..++.++.-
T Consensus 173 g~~~~a~sg-------------------h----------tghilalysw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~ 222 (350)
T KOG0641|consen 173 GQGFHALSG-------------------H----------TGHILALYSW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDN 222 (350)
T ss_pred CCcceeecC-------------------C----------cccEEEEEEe-cCcEEEccCCCceEEEEeeeccceeeeccC
Confidence 432222221 2 3445555554 467777777 78999999987777665421
Q ss_pred CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCC
Q 003217 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (838)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~d 430 (838)
+- ++. | + ....|.++++.|.
T Consensus 223 ~~-----------------------------~~~--------------------g---------l--essavaav~vdps 242 (350)
T KOG0641|consen 223 DF-----------------------------HDG--------------------G---------L--ESSAVAAVAVDPS 242 (350)
T ss_pred cc-----------------------------cCC--------------------C---------c--ccceeEEEEECCC
Confidence 10 000 0 0 1234667889999
Q ss_pred Cc-EEEEECCCeEEEEcCC-CCeeeEeecCCccEEEEEEc-C-CEEEEEeeCCeEEEEeCCCcc-----cccccccccCE
Q 003217 431 GM-IWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCTF-G-SQIWVGYMNGIVQVLDLEGNL-----LGGWVAHSSPV 501 (838)
Q Consensus 431 g~-l~Sgs~DgtIrlWD~~-g~~l~tl~~H~~~V~sls~d-G-~~LasGs~DgtIrlWD~~g~~-----i~~l~gH~~~V 501 (838)
|+ |++|..|....++|+. |+.++.|..|+..|.|+-+. | -++.+|+.|..|+|=|+.|.+ +.+...|.+.+
T Consensus 243 grll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~ 322 (350)
T KOG0641|consen 243 GRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKA 322 (350)
T ss_pred cceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCce
Confidence 98 6899999999999995 68899999999999999775 3 499999999999999998764 44555788888
Q ss_pred EEEEeCCC--EEEEEcCCCCeeeeec
Q 003217 502 IKMAVGAG--YIFTLANHGGIRGWNV 525 (838)
Q Consensus 502 ~sla~dg~--~l~S~S~DgtIrlWdl 525 (838)
..+.++++ .++|.|.|+|+.+|-+
T Consensus 323 i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 323 IQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred EEEEecCccceeeeccCcceEEEecc
Confidence 88888776 4679999999999975
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.5e-18 Score=173.81 Aligned_cols=266 Identities=15% Similarity=0.201 Sum_probs=196.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee--CCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS--EGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS--~DgtIrvW 267 (838)
.+.|.++.|+++|..|++.+.|.+++++|...+ +...++.-++-.|..+.|..... +.-+| .|.+||.-
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g--------~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG--------KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCC--------ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 568999999999999999999999999999998 56777777778899999987765 54444 59999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
++.+.+..--+. +| ...|..+..+|.+..+.|++ |++|++||+++.+|..
T Consensus 86 sl~dNkylRYF~-------------------GH----------~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg 136 (311)
T KOG1446|consen 86 SLHDNKYLRYFP-------------------GH----------KKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG 136 (311)
T ss_pred EeecCceEEEcC-------------------CC----------CceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce
Confidence 997755432222 23 34577788888888888887 7899999999888866
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCC-cEEEEec----cCccc-----
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAA----KGGFG----- 416 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~-~v~~v~~----~g~~~----- 416 (838)
.+...+... .+|.|.+....++... .+..... +|.|.
T Consensus 137 ~l~~~~~pi---------------------------------~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~ 183 (311)
T KOG1446|consen 137 LLNLSGRPI---------------------------------AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT 183 (311)
T ss_pred EEecCCCcc---------------------------------eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC
Confidence 554322211 1111222211222222 1211111 23322
Q ss_pred -cCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccE----E-EEEEcCCEEEEEeeCCeEEEEeCC-
Q 003217 417 -DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAV----Q-CLCTFGSQIWVGYMNGIVQVLDLE- 487 (838)
Q Consensus 417 -~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V----~-sls~dG~~LasGs~DgtIrlWD~~- 487 (838)
........+.|||||+ |+.++..+.+.+-|. +|..++++.+|.+.- . ++.|||++|.+|+.||+|.+|+++
T Consensus 184 ~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 184 DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 2345567799999998 677777888999999 999999999876542 3 346899999999999999999998
Q ss_pred Ccccccccc-cccCEEEEEeCCCEEEEEcCCCCeeeeecC
Q 003217 488 GNLLGGWVA-HSSPVIKMAVGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 488 g~~i~~l~g-H~~~V~sla~dg~~l~S~S~DgtIrlWdl~ 526 (838)
|+....+.+ |...+.++.+.+++..=++.+..+-+|-..
T Consensus 264 g~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 264 GKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred CcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecc
Confidence 888889988 788999999999988878888889999643
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=194.04 Aligned_cols=262 Identities=21% Similarity=0.259 Sum_probs=196.5
Q ss_pred CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003217 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (838)
Q Consensus 142 ~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~ 221 (838)
.+.|.++-...|++|+..+..... . ..++ ...|+++.++++|+.|+.|..+|.|.+||..
T Consensus 188 ~n~laValg~~vylW~~~s~~v~~------------------l-~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~ 247 (484)
T KOG0305|consen 188 ANVLAVALGQSVYLWSASSGSVTE------------------L-CSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVK 247 (484)
T ss_pred CCeEEEEecceEEEEecCCCceEE------------------e-EecC-CCceEEEEECCCCCEEEEeecCCeEEEEehh
Confidence 445666778899999986543110 0 1122 5689999999999999999999999999998
Q ss_pred CCccCCCCCcceeEEecc-ccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccc
Q 003217 222 ARLLDSDDGFGEVLSWQA-HRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300 (838)
Q Consensus 222 ~g~~~~~~~~~~~~~l~g-H~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~ 300 (838)
.. +.+..+.+ |...|.++++.. ..+.+|+.|+.|..+|+...+..... +.+|
T Consensus 248 ~~--------k~~~~~~~~h~~rvg~laW~~-~~lssGsr~~~I~~~dvR~~~~~~~~------------------~~~H 300 (484)
T KOG0305|consen 248 EQ--------KKTRTLRGSHASRVGSLAWNS-SVLSSGSRDGKILNHDVRISQHVVST------------------LQGH 300 (484)
T ss_pred hc--------cccccccCCcCceeEEEeccC-ceEEEecCCCcEEEEEEecchhhhhh------------------hhcc
Confidence 75 56777888 999999999983 33679999999999999664332220 1112
Q ss_pred eeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEec
Q 003217 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTS 379 (838)
Q Consensus 301 ~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~ 379 (838)
..+|.-+...+++..+++++ |..+.|||..+.+++..+.
T Consensus 301 ----------~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~------------------------------ 340 (484)
T KOG0305|consen 301 ----------RQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT------------------------------ 340 (484)
T ss_pred ----------cceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe------------------------------
Confidence 34566677778888888887 6789999985544433332
Q ss_pred CCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC--CCcEEEEE--CCCeEEEEcC-CCCeeeE
Q 003217 380 SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI--DGMIWTGG--ANGLLLQWDP-NGNRLQD 454 (838)
Q Consensus 380 ~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~--dg~l~Sgs--~DgtIrlWD~-~g~~l~t 454 (838)
+|...|.+++++| .|.||+|+ .|++|++||+ +|.+++.
T Consensus 341 -------------------------------------~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 341 -------------------------------------EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS 383 (484)
T ss_pred -------------------------------------ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc
Confidence 2333445566655 35577765 6999999999 7888887
Q ss_pred eecCCccEEEEEEc--CCEEEE--EeeCCeEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 455 FQYLPFAVQCLCTF--GSQIWV--GYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 455 l~~H~~~V~sls~d--G~~Las--Gs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
... ...|++|... .+-|++ |..+..|.||+.. -+.+..+.||+..|..++ +||+.+++|+.|.|+|+|++-.
T Consensus 384 vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 384 VDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 754 5679999764 333443 5578899999976 578999999999999987 6899999999999999999865
Q ss_pred C
Q 003217 528 P 528 (838)
Q Consensus 528 ~ 528 (838)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 4
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=179.67 Aligned_cols=239 Identities=17% Similarity=0.272 Sum_probs=180.9
Q ss_pred CCccccCceeEEEEecCCEEEE-------------ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCC
Q 003217 126 LRETQIGCFLRTIVCTEEQLWA-------------GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVS 192 (838)
Q Consensus 126 ~~~~~~~~~~~~l~~~~~~l~~-------------g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~ 192 (838)
||.-++|..+-++.++..-+|. +.|=+-+|||.-++...- .| ++ .-
T Consensus 43 lr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelh-----------------sf-~h---kh 101 (334)
T KOG0278|consen 43 LRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELH-----------------SF-EH---KH 101 (334)
T ss_pred hccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhh-----------------hh-hh---hh
Confidence 6777778888888777666664 346688999976543221 12 22 33
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
-|.+++|+.|...|.||+.+..+|++|++... .+...+.||++.|..+.|....+ ++|.+.|++||+||..+
T Consensus 102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~-------App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT 174 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK-------APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT 174 (334)
T ss_pred eeeeEEecccchhhhccchHHHhhhhhccCCC-------CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc
Confidence 79999999999999999999999999998763 45567889999999999987655 88889999999999988
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecC
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNID 351 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~ 351 (838)
+....++.. ...|+++-.++++..|..+-..+|+.||+.+-.+++.+...
T Consensus 175 gt~v~sL~~------------------------------~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P 224 (334)
T KOG0278|consen 175 GTEVQSLEF------------------------------NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP 224 (334)
T ss_pred CcEEEEEec------------------------------CCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCc
Confidence 654332211 33566677777777776666678999999987777765432
Q ss_pred CceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC
Q 003217 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG 431 (838)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg 431 (838)
-.+ ++...+|+.
T Consensus 225 ~nV--------------------------------------------------------------------~SASL~P~k 236 (334)
T KOG0278|consen 225 CNV--------------------------------------------------------------------ESASLHPKK 236 (334)
T ss_pred ccc--------------------------------------------------------------------ccccccCCC
Confidence 221 111123333
Q ss_pred -cEEEEECCCeEEEEcC-CCCeeeEe-ecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC-Ccc
Q 003217 432 -MIWTGGANGLLLQWDP-NGNRLQDF-QYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNL 490 (838)
Q Consensus 432 -~l~Sgs~DgtIrlWD~-~g~~l~tl-~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~ 490 (838)
.++.|+.|..+..+|- +|+.+..+ ++|.++|.||. +||..-++||.||+||||.+. ++.
T Consensus 237 ~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 237 EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 3678889999999999 89888886 89999999985 589999999999999999976 543
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-18 Score=171.26 Aligned_cols=270 Identities=17% Similarity=0.172 Sum_probs=188.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..|++-+.++.+|.+|+|+++|.++-||-...| +.+-+..||+++|+++..+-+.+ |+|||.|.++||||+
T Consensus 10 ERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--------erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 10 ERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--------ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccceEEecCCCcEEEEecCCCCceEEEecCC--------ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 779999999999999999999999999998776 67889999999999999999887 899999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCC------cEEEEeccCcc
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL------SFALWDARTRE 343 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~------tI~lWD~~tg~ 343 (838)
++++....... ...|+.+-++.++..+..+.+. .|.++|++...
T Consensus 82 ~tGk~la~~k~------------------------------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 82 ETGKQLATWKT------------------------------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred CCCcEEEEeec------------------------------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 98765433221 2245666666666666555542 46677776321
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC-c----cc
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG-G----FG 416 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g-~----~~ 416 (838)
. +. ..++.-.++... +.........+.+..++.|+.+|-...+. .| . -.
T Consensus 132 ~--------~~-------------~s~ep~~kI~t~---~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~ 187 (327)
T KOG0643|consen 132 S--------DI-------------DSEEPYLKIPTP---DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE 187 (327)
T ss_pred h--------hh-------------cccCceEEecCC---ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh
Confidence 0 00 000000011110 11111112223345667888888655554 22 1 23
Q ss_pred cCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-----
Q 003217 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE----- 487 (838)
Q Consensus 417 ~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~----- 487 (838)
.|...|..+.+++|.+ .++||.|.+-++||. +-++++++.. ..+|++.+. .-.+++.|+-. .--|++
T Consensus 188 ~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGq---eA~dVTTT~~r 263 (327)
T KOG0643|consen 188 EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQ---EAMDVTTTSTR 263 (327)
T ss_pred hhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccccceecccccceEEecCCc---eeeeeeeeccc
Confidence 4778899999999988 799999999999999 6799999976 568887654 34566655422 222321
Q ss_pred -Cc------------ccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecC
Q 003217 488 -GN------------LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 488 -g~------------~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~ 526 (838)
|+ .+...+||-++|++|+ ++|+.-+||+.||.||+--+.
T Consensus 264 ~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 264 AGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 32 3678899999999998 578889999999999996543
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-18 Score=185.31 Aligned_cols=225 Identities=20% Similarity=0.265 Sum_probs=170.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEEC
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPW 269 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~ 269 (838)
..|+++.|-.||++|+.|..-|.|+++|+.+. ..++.+++|+.+|..+.|+|++. |++||+|+.+|+||+
T Consensus 69 ~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred cceeEEEeecCCeEEEccCCcCcEEEeccccH--------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence 36889999999999999999999999997663 34567899999999999999875 689999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeC-CCcEEEEeccCc-cEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTR-ELLK 346 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~~tI~lWD~~tg-~~l~ 346 (838)
.+..-... +.+| +..|++.+..+... .|++|+ |++|++||+++. ..+.
T Consensus 141 s~a~v~~~-------------------l~~h----------tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 141 STAYVQAE-------------------LSGH----------TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV 191 (487)
T ss_pred CCcEEEEE-------------------ecCC----------cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE
Confidence 76432111 1223 55688888776544 788888 578999999764 2222
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
.| .|..+|+.+.
T Consensus 192 el--------------------------------------------------------------------nhg~pVe~vl 203 (487)
T KOG0310|consen 192 EL--------------------------------------------------------------------NHGCPVESVL 203 (487)
T ss_pred Ee--------------------------------------------------------------------cCCCceeeEE
Confidence 22 1233455555
Q ss_pred EcCCCc-EEEEECCCeEEEEcC-CC-CeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccC
Q 003217 427 TSIDGM-IWTGGANGLLLQWDP-NG-NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP 500 (838)
Q Consensus 427 ~S~dg~-l~Sgs~DgtIrlWD~-~g-~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~ 500 (838)
+-|.|. +++++.+ .||+||+ +| +.+..+..|...|+|+.. ++.+|+||+.|+.|+++|++ -+.+.+|+- .++
T Consensus 204 ~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~p 281 (487)
T KOG0310|consen 204 ALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-PGP 281 (487)
T ss_pred EcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-ccc
Confidence 556654 6777755 5999999 46 445555559999999965 67899999999999999966 477888854 578
Q ss_pred EEEEE--eCCCEEEEEcCCCCeeee
Q 003217 501 VIKMA--VGAGYIFTLANHGGIRGW 523 (838)
Q Consensus 501 V~sla--~dg~~l~S~S~DgtIrlW 523 (838)
|.+++ +|++.++-|-.||.+-+=
T Consensus 282 vLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 282 VLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred eeeEEecCCCceEEEecccceeeee
Confidence 88876 577889999999987654
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=174.36 Aligned_cols=245 Identities=20% Similarity=0.233 Sum_probs=166.9
Q ss_pred eee-cCCCCCccc---cCceeEEEEe---cCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecC
Q 003217 119 LEV-KPHPLRETQ---IGCFLRTIVC---TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG 190 (838)
Q Consensus 119 ~~~-~~~~~~~~~---~~~~~~~l~~---~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g 190 (838)
+|+ +|..++|.+ +...+..++= .++++++ +.||++|+||+.... .+..-|+++
T Consensus 43 le~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s----------------~Pi~~~kEH--- 103 (311)
T KOG0277|consen 43 LEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS----------------KPIHKFKEH--- 103 (311)
T ss_pred EecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCC----------------cchhHHHhh---
Confidence 444 344555533 2334444442 2557776 679999999964321 122235553
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC-C-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvW 267 (838)
...|+++.+++ +++.+.++|.||+||+|+...+ +.+++|.||..-|...+|+|.- . ++|+|.|+++|+|
T Consensus 104 ~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lw 175 (311)
T KOG0277|consen 104 KREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLW 175 (311)
T ss_pred hhheEEeccccccceeEEeeccCCceEeecCCCC--------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEE
Confidence 67999999987 4567888999999999999876 6788999999999999999964 4 6899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcEEEEeccCcc-E
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRE-L 344 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI~lWD~~tg~-~ 344 (838)
|+....+.+.+.. | +.++.+.-.+. +...|++++ |+.|+.||++.-+ +
T Consensus 176 dvr~~gk~~~i~a-------------------h----------~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 176 DVRSPGKFMSIEA-------------------H----------NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP 226 (311)
T ss_pred EecCCCceeEEEe-------------------c----------cceeEeecccccCCcEEEecCCCceEEEEehhhcccc
Confidence 9865322222111 1 22333333333 344566666 6899999997522 1
Q ss_pred EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEE
Q 003217 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (838)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (838)
+-+| .|+.-+ |+.
T Consensus 227 l~eL---------------------------------------------------~gh~~A----------------VRk 239 (311)
T KOG0277|consen 227 LFEL---------------------------------------------------NGHGLA----------------VRK 239 (311)
T ss_pred ceee---------------------------------------------------cCCceE----------------EEE
Confidence 1111 122222 333
Q ss_pred EEEcCCC--cEEEEECCCeEEEEcCC-C-CeeeEeecCCccEEEEEE---cCCEEEEEeeCCeEEEEeC
Q 003217 425 LTTSIDG--MIWTGGANGLLLQWDPN-G-NRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDL 486 (838)
Q Consensus 425 la~S~dg--~l~Sgs~DgtIrlWD~~-g-~~l~tl~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~ 486 (838)
|.+||-- .|+|++-|-|+|+||.. + .++.+...|+.-|..+.. ++.++|+.+-|+.++||+.
T Consensus 240 vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 240 VKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 4455543 47899999999999993 4 678888899998887743 6789999999999999985
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=185.38 Aligned_cols=239 Identities=21% Similarity=0.294 Sum_probs=173.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccC------------CCCCcceeEEeccccccEEEEEEecCCC-EEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD------------SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS 257 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~------------~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S 257 (838)
.-+|.||+++|+++++++++.||+|.-|++.++... ...+++. ..++|...|.+++.|+||+ |+|
T Consensus 142 ~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~--~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 142 QLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKE--SRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCc--ccccccceeEEEEEcCCCcEEEe
Confidence 668999999999999999999999999999887421 0011111 1148999999999999999 899
Q ss_pred eeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEE
Q 003217 258 GSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFAL 336 (838)
Q Consensus 258 gS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~l 336 (838)
|+.|..|-||+.++.+....+. +| ...|..|++-.....+++++ |.+|++
T Consensus 220 gg~d~~v~Iw~~~t~ehv~~~~-------------------gh----------r~~V~~L~fr~gt~~lys~s~Drsvkv 270 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHVKVFK-------------------GH----------RGAVSSLAFRKGTSELYSASADRSVKV 270 (479)
T ss_pred cCCCceEEEecCcccchhhccc-------------------cc----------ccceeeeeeecCccceeeeecCCceEE
Confidence 9999999999998765332221 22 44677778766666666666 789999
Q ss_pred EeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccc
Q 003217 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (838)
Q Consensus 337 WD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~ 416 (838)
|++..-..+.+|-+|. +++
T Consensus 271 w~~~~~s~vetlyGHq---------------------------------------------------d~v---------- 289 (479)
T KOG0299|consen 271 WSIDQLSYVETLYGHQ---------------------------------------------------DGV---------- 289 (479)
T ss_pred EehhHhHHHHHHhCCc---------------------------------------------------cce----------
Confidence 9987655544443332 222
Q ss_pred cCCCceEEEEEcCCCcEEE-EECCCeEEEEcCCCCeeeEeecCCccEEEEEE-cCCEEEEEeeCCeEEEEeCC-Cccccc
Q 003217 417 DDNRRTEALTTSIDGMIWT-GGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (838)
Q Consensus 417 ~~~~~v~ala~S~dg~l~S-gs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~ 493 (838)
.++....-+++++ |+.|+|+++|++.-+-.-.|.+|.+.+.|+++ +..++++|+.+|.|.||++. -+++.+
T Consensus 290 ------~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~ 363 (479)
T KOG0299|consen 290 ------LGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFT 363 (479)
T ss_pred ------eeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeE
Confidence 1222222234554 55899999999965555568899999999987 67799999999999999975 333221
Q ss_pred c------------cccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 494 W------------VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 494 l------------~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
. ..|..+|++|+. ..+.++|||.+|.||+|.+..
T Consensus 364 ~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 364 SRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred eeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 1 122348999984 567899999999999999764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.2e-18 Score=180.68 Aligned_cols=275 Identities=19% Similarity=0.320 Sum_probs=181.0
Q ss_pred EEEecCCEEEE-ecCCCEEEEeCCCCccccc--cccccccCCCCCCCCCCceee--ecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 137 TIVCTEEQLWA-GGENGLRVWNLKELYDESE--SDSVSVSKSKGEDGTAPFKES--VKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 137 ~l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~--~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
.+..++...+. +.+++|-=|++.+...... .+... ..+++. |++.+ .| ...++|+++++||++|+||+.
T Consensus 149 als~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev-~k~~~~----~~k~~r~~h-~keil~~avS~Dgkylatgg~ 222 (479)
T KOG0299|consen 149 ALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV-LKSHGN----PLKESRKGH-VKEILTLAVSSDGKYLATGGR 222 (479)
T ss_pred EeeccccceeecCCCcceeeeehhcCcccccccccchh-hhhccC----CCCcccccc-cceeEEEEEcCCCcEEEecCC
Confidence 33444556665 6699999999976653311 00000 011222 22222 34 678999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC-CEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
|..|.||+..+. +.+..|.||+++|.+++|=... +|+|+|.|++||+|+++.....-++..+
T Consensus 223 d~~v~Iw~~~t~--------ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH--------- 285 (479)
T KOG0299|consen 223 DRHVQIWDCDTL--------EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH--------- 285 (479)
T ss_pred CceEEEecCccc--------chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC---------
Confidence 999999999997 6778899999999999997643 4999999999999999653322222221
Q ss_pred eeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeecccCccccc
Q 003217 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (838)
. ..|..+-.. ...++++++ |.|++||++.. +..-+|.
T Consensus 286 ------------q--------d~v~~IdaL-~reR~vtVGgrDrT~rlwKi~e-esqlifr------------------- 324 (479)
T KOG0299|consen 286 ------------Q--------DGVLGIDAL-SRERCVTVGGRDRTVRLWKIPE-ESQLIFR------------------- 324 (479)
T ss_pred ------------c--------cceeeechh-cccceEEeccccceeEEEeccc-cceeeee-------------------
Confidence 1 112222222 233444443 68999999832 1111111
Q ss_pred ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-
Q 003217 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP- 447 (838)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~- 447 (838)
++...+.+++|-.+..++|||+||+|.||++
T Consensus 325 ------------------------------------------------g~~~sidcv~~In~~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 325 ------------------------------------------------GGEGSIDCVAFINDEHFVSGSDNGSIALWSLL 356 (479)
T ss_pred ------------------------------------------------CCCCCeeeEEEecccceeeccCCceEEEeeec
Confidence 1122345666666777999999999999999
Q ss_pred CCCeeeEee-c-----------CCccEEEEEEc--CCEEEEEeeCCeEEEEeCC-C----cccccccccccCEEEEEe--
Q 003217 448 NGNRLQDFQ-Y-----------LPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE-G----NLLGGWVAHSSPVIKMAV-- 506 (838)
Q Consensus 448 ~g~~l~tl~-~-----------H~~~V~sls~d--G~~LasGs~DgtIrlWD~~-g----~~i~~l~gH~~~V~sla~-- 506 (838)
+.+.+.+.. . +..||++|+.- ...+++|+-+|.||||-++ | +++..+. -.+.|++|++
T Consensus 357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~ 435 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSN 435 (479)
T ss_pred ccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEcc
Confidence 666665543 1 22389999763 4599999999999999987 4 2455555 5678999884
Q ss_pred CCCEEEE-EcCCCCeeeee
Q 003217 507 GAGYIFT-LANHGGIRGWN 524 (838)
Q Consensus 507 dg~~l~S-~S~DgtIrlWd 524 (838)
+|+.++. .+....+=.|-
T Consensus 436 sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 436 SGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred CCCEEEEecccccccceee
Confidence 7775554 44444444454
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-18 Score=198.68 Aligned_cols=304 Identities=19% Similarity=0.234 Sum_probs=211.9
Q ss_pred CCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCccC----CCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCc
Q 003217 191 VSSVMCMVGDEASGVVWSGH--RDGRIMCWKMNARLLD----SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG 263 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs--~DGtIrvWd~~~g~~~----~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt 263 (838)
...|+++.++|+|..++||+ .||.+++|+.+.-..+ ..+.-+++.+..-|.+.|+|+.|++||+ |++||+|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 66799999999999999999 9999999997642100 0011234456678999999999999998 899999999
Q ss_pred EEEEECCCc-ce-eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEecc
Q 003217 264 IKIWPWEAI-EK-ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR 340 (838)
Q Consensus 264 IrvWd~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~ 340 (838)
|-||..... .. .+.-+......... +....+++| .++|..+.-++++..+++++ |.+|.|||.+
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~w---k~~~~l~~H----------~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~ 159 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESW---KVVSILRGH----------DSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK 159 (942)
T ss_pred EEEeeecccCCccccccccccccccee---eEEEEEecC----------CCccceeccCCCccEEEEecccceEEEEccc
Confidence 999998631 00 01000111111100 112234444 67888888888888999888 7899999999
Q ss_pred CccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCC
Q 003217 341 TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (838)
Q Consensus 341 tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~ 420 (838)
|.++++++.+|..
T Consensus 160 tF~~~~vl~~H~s------------------------------------------------------------------- 172 (942)
T KOG0973|consen 160 TFELLKVLRGHQS------------------------------------------------------------------- 172 (942)
T ss_pred cceeeeeeecccc-------------------------------------------------------------------
Confidence 9988887765532
Q ss_pred ceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCcc------EE--EEEEcCCEEEEEee----CCeEEEEeC
Q 003217 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFA------VQ--CLCTFGSQIWVGYM----NGIVQVLDL 486 (838)
Q Consensus 421 ~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~------V~--sls~dG~~LasGs~----DgtIrlWD~ 486 (838)
.|-.+.|+|-|+ ++|-+.|++|++|++ +-.+.+.++.+... .. +-+|||.+|++.-. -.++.|.+.
T Consensus 173 ~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 173 LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 122355777776 899999999999997 54566666654431 22 23679999999764 458889888
Q ss_pred C-CcccccccccccCEEEEEeCC-------C------------EEEEEcCCCCeeeeecCCCCCCchhhhhhhhcccccc
Q 003217 487 E-GNLLGGWVAHSSPVIKMAVGA-------G------------YIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLY 546 (838)
Q Consensus 487 ~-g~~i~~l~gH~~~V~sla~dg-------~------------~l~S~S~DgtIrlWdl~s~~~~d~~~~~~l~~r~~~y 546 (838)
. .+.-..|.||..+|..+.+++ + .+++||.|++|-||....+.|+--+ +++...
T Consensus 253 ~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi--~~lf~~---- 326 (942)
T KOG0973|consen 253 GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI--HNLFNK---- 326 (942)
T ss_pred CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh--hhhhcC----
Confidence 6 467788999999999987521 1 4679999999999999888886543 222111
Q ss_pred ccccceeeEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCc
Q 003217 547 TRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMG 595 (838)
Q Consensus 547 ~~~~~~~i~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~ 595 (838)
.|.-..|+-.+..- |.+ ..|--|++|.|||-+++
T Consensus 327 ------SI~DmsWspdG~~L--------fac-S~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 327 ------SIVDMSWSPDGFSL--------FAC-SLDGTVALIHFEEKELG 360 (942)
T ss_pred ------ceeeeeEcCCCCeE--------EEE-ecCCeEEEEEcchHHhC
Confidence 26667887665322 121 12345899999997654
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-17 Score=164.79 Aligned_cols=251 Identities=16% Similarity=0.200 Sum_probs=175.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd 268 (838)
.+.|.+|++..+|..|++|+.|+++++|+++.. ++.......||.+.|-.++++|... ++++|.|++||+||
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~------r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD------RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecch------hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 568999999999999999999999999999875 1222344689999999999998653 78999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
...+++...... ...-..+.-++++..++.++ ++.|...|+++.+....
T Consensus 94 ~r~~k~~~~i~~------------------------------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 94 IRSGKCTARIET------------------------------KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE 143 (313)
T ss_pred eccCcEEEEeec------------------------------cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh
Confidence 987665432211 11112233445566555555 56788899988777654
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEE---Eec---cCccccCCCc
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR---VAA---KGGFGDDNRR 421 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~---v~~---~g~~~~~~~~ 421 (838)
.+..-.. + ..+ +... +. +=|. -...|... +.. -..+..|...
T Consensus 144 ~~~~~e~-n--e~~---------------w~~~--nd----~Ffl--------t~GlG~v~ILsypsLkpv~si~AH~sn 191 (313)
T KOG1407|consen 144 EQFKFEV-N--EIS---------------WNNS--ND----LFFL--------TNGLGCVEILSYPSLKPVQSIKAHPSN 191 (313)
T ss_pred hccccee-e--eee---------------ecCC--CC----EEEE--------ecCCceEEEEeccccccccccccCCcc
Confidence 4321111 0 000 1100 00 0011 11111111 111 1234456667
Q ss_pred eEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccccccc
Q 003217 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~g 496 (838)
..++.|+|+|+ +++|+.|..+-|||+ +--|++.+.-+.-+|..|++ ||++||+||+|..|-|=+++ |..+... -
T Consensus 192 CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI-~ 270 (313)
T KOG1407|consen 192 CICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI-P 270 (313)
T ss_pred eEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe-e
Confidence 77899999998 899999999999999 67899999999999998876 79999999999999999987 6554444 3
Q ss_pred cccCEEEEEeCCCE
Q 003217 497 HSSPVIKMAVGAGY 510 (838)
Q Consensus 497 H~~~V~sla~dg~~ 510 (838)
|.++-.+|++++++
T Consensus 271 ~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 271 CEGPTFTVAWHPKR 284 (313)
T ss_pred ccCCceeEEecCCC
Confidence 67788899998874
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7e-18 Score=178.52 Aligned_cols=264 Identities=12% Similarity=0.061 Sum_probs=170.5
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003217 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (838)
Q Consensus 142 ~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~ 220 (838)
++.|.+ +.|.+.-+|++..-....- -++-..| ..+|.-+.||||.++|++++.|..+++||+
T Consensus 236 GkyLAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh-~~~V~yi~wSPDdryLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 236 GKYLASASKDSTAIIWIVVYDVHFKL----------------KKTLVGH-SQPVSYIMWSPDDRYLLACGFDEVLSLWDV 298 (519)
T ss_pred CeeEeeccCCceEEEEEEecCcceee----------------eeeeecc-cCceEEEEECCCCCeEEecCchHheeeccC
Confidence 445554 4599999998742111100 0111123 789999999999999999999999999999
Q ss_pred CCCccCCCCCcceeEEe-ccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcce-eeecCCCceeeeEEEEeeceeec
Q 003217 221 NARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEK-ALSLKPEERHTAALIVERSYIDL 297 (838)
Q Consensus 221 ~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l 297 (838)
.+|. ....+ .+|...|.|+++.|||. +++||.|++|..||++.... .....
T Consensus 299 ~tgd--------~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gv------------------ 352 (519)
T KOG0293|consen 299 DTGD--------LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGV------------------ 352 (519)
T ss_pred Ccch--------hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccc------------------
Confidence 9983 33332 35678999999999997 99999999999999976321 11000
Q ss_pred ccceeccceeeeecCCeEEEEEcCCCCEEEEe-CCCcEEEEeccCccEEEEEecCCceEEeeecccCccccc----ccce
Q 003217 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM----EDEF 372 (838)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~----~~~~ 372 (838)
..+.+..++..++|..|... .|..|++++..+...++..+.+ +...+..++.+..... +.++
T Consensus 353 ------------r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-~~its~~iS~d~k~~LvnL~~qei 419 (519)
T KOG0293|consen 353 ------------RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE-QPITSFSISKDGKLALVNLQDQEI 419 (519)
T ss_pred ------------ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc-CceeEEEEcCCCcEEEEEcccCee
Confidence 02457778877777766554 4788999999887665433222 2222333332221110 1111
Q ss_pred eeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEE-EEcCCCcEEEEECCCeEEEEcC-CCC
Q 003217 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL-TTSIDGMIWTGGANGLLLQWDP-NGN 450 (838)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al-a~S~dg~l~Sgs~DgtIrlWD~-~g~ 450 (838)
.+|..... +. ...+.|+..+-+. |.+. .--.+..++|||+|+.|++|+. +|+
T Consensus 420 ~LWDl~e~---~l----------v~kY~Ghkq~~fi-------------IrSCFgg~~~~fiaSGSED~kvyIWhr~sgk 473 (519)
T KOG0293|consen 420 HLWDLEEN---KL----------VRKYFGHKQGHFI-------------IRSCFGGGNDKFIASGSEDSKVYIWHRISGK 473 (519)
T ss_pred EEeecchh---hH----------HHHhhcccccceE-------------EEeccCCCCcceEEecCCCceEEEEEccCCc
Confidence 11111100 00 0112222222111 1111 1122345899999999999999 899
Q ss_pred eeeEeecCCccEEEEEEc---CCEEEEEeeCCeEEEEeCC
Q 003217 451 RLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 451 ~l~tl~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~ 487 (838)
.+.++.||...|+||+.+ ..++|||+.|||||||-..
T Consensus 474 ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 474 LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 999999999999999864 4599999999999999764
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-18 Score=185.41 Aligned_cols=259 Identities=12% Similarity=0.127 Sum_probs=167.9
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~ 227 (838)
|.|+.|+|||+-.- ..| . ..| .+| ..+|..+.|+++|..+.|+|+|+.||+||.++|
T Consensus 234 gmD~~vklW~vy~~--~~~------------l--rtf--~gH-~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG---- 290 (503)
T KOG0282|consen 234 GMDGLVKLWNVYDD--RRC------------L--RTF--KGH-RKPVRDASFNNCGTSFLSASFDRFLKLWDTETG---- 290 (503)
T ss_pred CCCceEEEEEEecC--cce------------e--hhh--hcc-hhhhhhhhccccCCeeeeeecceeeeeeccccc----
Confidence 56999999998441 122 1 113 234 789999999999999999999999999999998
Q ss_pred CCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccc
Q 003217 228 DDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (838)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 305 (838)
++...|.- ...++++.|.||+. +++|..|+.|+.||..+++-...+. +++
T Consensus 291 ----~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd---~hL-------------------- 342 (503)
T KOG0282|consen 291 ----QVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD---RHL-------------------- 342 (503)
T ss_pred ----eEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH---hhh--------------------
Confidence 45544421 34678999999994 6799999999999998754221111 111
Q ss_pred eeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCce-EEeeecccCcccccccceeeEEEecCCCC
Q 003217 306 FSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQI-ENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (838)
Q Consensus 306 ~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~s~~~~~ 383 (838)
..+..+.+-+.+.+..+++ ++++++|+....-.++...-..+. .-.+...+.......+.+.
T Consensus 343 ------g~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d---------- 406 (503)
T KOG0282|consen 343 ------GAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD---------- 406 (503)
T ss_pred ------hheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccC----------
Confidence 1233344445666666666 478999999887765532211111 0011122211111111100
Q ss_pred cceeeeeEeecCcceeeecCCcEEEEeccCccccCCC--ceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCC
Q 003217 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR--RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLP 459 (838)
Q Consensus 384 ~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~--~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~ 459 (838)
..+.+-+...-.+.+.+..|.+|.. .-..+.|||||. |+||.+||.+.+||- +.+.+..+..|.
T Consensus 407 ------------N~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~ 474 (503)
T KOG0282|consen 407 ------------NYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD 474 (503)
T ss_pred ------------ceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC
Confidence 0001111111112222334445432 233578999998 899999999999999 678999999999
Q ss_pred ccEEEEEEc---CCEEEEEeeCCeEEEEe
Q 003217 460 FAVQCLCTF---GSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 460 ~~V~sls~d---G~~LasGs~DgtIrlWD 485 (838)
.++..+... ...+|+++-||.|++||
T Consensus 475 ~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 475 QPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceEEEEecCCCcceeEecccCceeEecC
Confidence 998888663 35999999999999997
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.2e-18 Score=182.53 Aligned_cols=208 Identities=15% Similarity=0.294 Sum_probs=159.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|.|++-+|.|.+|+-|+-.|.|.+|.+.+| ..+..|.+|-.+|+++.|+.||. |+|||.||.|.+|.+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG--------~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSG--------ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLL 152 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccc--------cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEE
Confidence 568999999999999999999999999999998 67777899999999999999998 789999999999987
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEe
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~ 349 (838)
... ++...+ . +-++++.|.
T Consensus 153 ~~l---------------------------------------------v~a~~~--------~--------~~~p~~~f~ 171 (476)
T KOG0646|consen 153 TDL---------------------------------------------VSADND--------H--------SVKPLHIFS 171 (476)
T ss_pred Eee---------------------------------------------cccccC--------C--------Cccceeeec
Confidence 220 000000 0 011122222
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc-
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS- 428 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S- 428 (838)
.|. -.|..+.+.
T Consensus 172 ~Ht-------------------------------------------------------------------lsITDl~ig~ 184 (476)
T KOG0646|consen 172 DHT-------------------------------------------------------------------LSITDLQIGS 184 (476)
T ss_pred cCc-------------------------------------------------------------------ceeEEEEecC
Confidence 221 111122211
Q ss_pred --CCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCC----------------
Q 003217 429 --IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE---------------- 487 (838)
Q Consensus 429 --~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~---------------- 487 (838)
.+++|+|+|.|.+||+||+ .|..+.++.- ...+++++.| ++++++|+++|.|.+-++.
T Consensus 185 Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~ 263 (476)
T KOG0646|consen 185 GGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE 263 (476)
T ss_pred CCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccc
Confidence 2457999999999999999 6888888764 5678888776 6799999999999988742
Q ss_pred -Cccccccccccc--CEEEEE--eCCCEEEEEcCCCCeeeeecCCCCCCchhh
Q 003217 488 -GNLLGGWVAHSS--PVIKMA--VGAGYIFTLANHGGIRGWNVTSPGPLDSIL 535 (838)
Q Consensus 488 -g~~i~~l~gH~~--~V~sla--~dg~~l~S~S~DgtIrlWdl~s~~~~d~~~ 535 (838)
+..+..+.||.+ .|++++ .||+.|+||+.||.|++||+.+...+..+.
T Consensus 264 ~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 264 ENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred ccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 124678999999 999987 699999999999999999998765555443
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=157.26 Aligned_cols=245 Identities=16% Similarity=0.175 Sum_probs=167.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-c----CC--CCCcceeEEeccccccEEEEEEecCCC-EEEeeCCC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL-L----DS--DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG 262 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~-~----~~--~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dg 262 (838)
+..|.+++|.|.|++.+.||...++|+-....-. . .. ..+......-+.|++.|.+.++||+|+ |++||.|+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 6689999999999999999999999987532210 0 00 011112223467899999999999999 58999999
Q ss_pred cEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEc----CCCCEEEEeCCC--cEEE
Q 003217 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD----HSRAKVWSAGFL--SFAL 336 (838)
Q Consensus 263 tIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~----~~~~~V~s~s~~--tI~l 336 (838)
+||+-......+..+.+.-+-. .+.+.++.+++- ..+..+++++-+ .|.+
T Consensus 112 ~ik~l~fn~dt~~~~g~dle~n------------------------mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~ 167 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHDLEFN------------------------MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI 167 (350)
T ss_pred eEEEEecccccccccCcceeee------------------------ecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence 9999877543332221110000 112334444442 134456665533 4555
Q ss_pred EeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccc
Q 003217 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (838)
Q Consensus 337 WD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~ 416 (838)
=|-.+|+.++.+.+|. ..+
T Consensus 168 tdc~~g~~~~a~sght---------------------------------------------------ghi---------- 186 (350)
T KOG0641|consen 168 TDCGRGQGFHALSGHT---------------------------------------------------GHI---------- 186 (350)
T ss_pred eecCCCCcceeecCCc---------------------------------------------------ccE----------
Confidence 5666665544443332 111
Q ss_pred cCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeec-------CCccEEEEEEc--CCEEEEEeeCCeEEEEeC
Q 003217 417 DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY-------LPFAVQCLCTF--GSQIWVGYMNGIVQVLDL 486 (838)
Q Consensus 417 ~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~-------H~~~V~sls~d--G~~LasGs~DgtIrlWD~ 486 (838)
.++..=.+-+++||+.|.|||+||+ -..|+.++.. .++.|.++++| |+.|++|-.|..-.|||+
T Consensus 187 ------lalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 187 ------LALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred ------EEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 1111111235789999999999999 5678877642 34678887764 889999999999999999
Q ss_pred C-CcccccccccccCEEEEEeCC--CEEEEEcCCCCeeeeecC
Q 003217 487 E-GNLLGGWVAHSSPVIKMAVGA--GYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 487 ~-g~~i~~l~gH~~~V~sla~dg--~~l~S~S~DgtIrlWdl~ 526 (838)
. |+.++.+..|+..|.++.+.+ .|++++|.|..||+=|++
T Consensus 261 rg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 261 RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred eCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 8 578999999999999998654 589999999999998864
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-17 Score=178.26 Aligned_cols=223 Identities=20% Similarity=0.287 Sum_probs=164.6
Q ss_pred ecCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEE
Q 003217 140 CTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMC 217 (838)
Q Consensus 140 ~~~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d-g~~LaSGs~DGtIrv 217 (838)
.++..|.+|. .|.|+|+|..+..-.. .+.. | +.||..+.|+|+ ++++++|+.|+.+++
T Consensus 78 ~DG~LlaaGD~sG~V~vfD~k~r~iLR-----------------~~~a--h-~apv~~~~f~~~d~t~l~s~sDd~v~k~ 137 (487)
T KOG0310|consen 78 SDGRLLAAGDESGHVKVFDMKSRVILR-----------------QLYA--H-QAPVHVTKFSPQDNTMLVSGSDDKVVKY 137 (487)
T ss_pred cCCeEEEccCCcCcEEEeccccHHHHH-----------------HHhh--c-cCceeEEEecccCCeEEEecCCCceEEE
Confidence 3455555655 5799999965411111 1222 3 779999999985 578888999999999
Q ss_pred EECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCc-ceeeecCCCceeeeEEEEeece
Q 003217 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAI-EKALSLKPEERHTAALIVERSY 294 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~-~~~~~~~~~~~~~~~~~~~~s~ 294 (838)
||+.+. .....+.||++.|.+.+++|-.. ++|||.||+||+||+.+. ....++.
T Consensus 138 ~d~s~a--------~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--------------- 194 (487)
T KOG0310|consen 138 WDLSTA--------YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--------------- 194 (487)
T ss_pred EEcCCc--------EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec---------------
Confidence 999996 44668999999999999999644 689999999999998663 2222221
Q ss_pred eecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceee
Q 003217 295 IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (838)
Q Consensus 295 ~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (838)
| --.|..+++-++|..|++++...|++||+.+|..+-+.
T Consensus 195 -----h----------g~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~-------------------------- 233 (487)
T KOG0310|consen 195 -----H----------GCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS-------------------------- 233 (487)
T ss_pred -----C----------CCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh--------------------------
Confidence 1 11345566667788999999899999999876432110
Q ss_pred EEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCee
Q 003217 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRL 452 (838)
Q Consensus 375 ~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l 452 (838)
+..|.+.|+++.+..+++ |+||+-|+.||++|. +-+.+
T Consensus 234 ----------------------------------------~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv 273 (487)
T KOG0310|consen 234 ----------------------------------------MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVV 273 (487)
T ss_pred ----------------------------------------hhcccceEEEEEeecCCceEeecccccceEEEEccceEEE
Confidence 123667778888777766 999999999999997 56788
Q ss_pred eEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC
Q 003217 453 QDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 453 ~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (838)
..+.. .++|.+++ ++++.++.|-.+|.+-+-+..
T Consensus 274 ~s~~~-~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 274 HSWKY-PGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred Eeeec-ccceeeEEecCCCceEEEecccceeeeehhh
Confidence 77754 77899875 467899999999998877543
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.2e-17 Score=171.26 Aligned_cols=268 Identities=15% Similarity=0.158 Sum_probs=206.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
...+.++...+....+.+|+.|.++.++|...+ +.+.+|+||+..|+++.|+++.. +.++|.|..||||..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~--------q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~ 290 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN--------QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSV 290 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchh--------hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecc
Confidence 446777877776678999999999999999886 56778999999999999999987 679999999999998
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEE-EeCCCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAGFLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~-s~s~~tI~lWD~~tg~~l~~l 348 (838)
........... | ...|+.+...+.+..+. +..+++...-|+++|.++.+.
T Consensus 291 ~~~s~~~~~~~-------------------h----------~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~v 341 (506)
T KOG0289|consen 291 PLSSEPTSSRP-------------------H----------EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVV 341 (506)
T ss_pred ccccCcccccc-------------------c----------cccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEE
Confidence 54322111111 1 23455555555555444 444678889999999887665
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec------cCccccCCCce
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA------KGGFGDDNRRT 422 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~------~g~~~~~~~~v 422 (838)
..... +....+..|.+++.....|+.+++.++|. ...|.+|...|
T Consensus 342 s~~~s-----------------------------~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~v 392 (506)
T KOG0289|consen 342 SDETS-----------------------------DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPV 392 (506)
T ss_pred eeccc-----------------------------cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCce
Confidence 43211 11233456788887778899999999986 24688899999
Q ss_pred EEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCC-ccEEEEEEc--CCEEEEEeeCCeEEEEeCC---Ccccccc
Q 003217 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLP-FAVQCLCTF--GSQIWVGYMNGIVQVLDLE---GNLLGGW 494 (838)
Q Consensus 423 ~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~-~~V~sls~d--G~~LasGs~DgtIrlWD~~---g~~i~~l 494 (838)
.++.|+.+|+ |++++.|+.|++||+ +-+..+++.... ..|.++++| |++|++++.|=.|.+++-. .+++..+
T Consensus 393 k~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 393 KAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL 472 (506)
T ss_pred eEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh
Confidence 9999999999 899999999999999 667777776533 368888885 8899999888777777743 4578889
Q ss_pred cccccCEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 495 VAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 495 ~gH~~~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
.-|++..+.+.+ +.++++++|-|..+|+..
T Consensus 473 ~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 473 ADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred hhcccccceeeecccceEEeeccchhheEEee
Confidence 999999999886 567999999999988764
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-16 Score=163.82 Aligned_cols=256 Identities=19% Similarity=0.266 Sum_probs=155.5
Q ss_pred eeEEEEecC--CEEE-Eec-CCCEEEEeCCCC-ccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEE
Q 003217 134 FLRTIVCTE--EQLW-AGG-ENGLRVWNLKEL-YDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~~--~~l~-~g~-d~~vrvWd~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaS 208 (838)
.+..|+++. ..|. +|+ |++||+|+++.. ... +.+ ..-+ .+||+|++|+.||..+++
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~---------------~ka---~~~~-~~PvL~v~WsddgskVf~ 89 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV---------------PKA---QQSH-DGPVLDVCWSDDGSKVFS 89 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCccc---------------chh---hhcc-CCCeEEEEEccCCceEEe
Confidence 344555553 3333 544 999999999652 111 111 1112 789999999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC---EEEeeCCCcEEEEECCCcceeeecCCCceee
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~---L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~ 285 (838)
|+-|+.+++||+.++ +..+...|.++|.++.|-+... |+|||+|+|||.||+.......++...+
T Consensus 90 g~~Dk~~k~wDL~S~---------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe--- 157 (347)
T KOG0647|consen 90 GGCDKQAKLWDLASG---------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE--- 157 (347)
T ss_pred eccCCceEEEEccCC---------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc---
Confidence 999999999999996 4677889999999999987543 7899999999999996533222221111
Q ss_pred eEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCc
Q 003217 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (838)
Q Consensus 286 ~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~ 364 (838)
++.+.+-... .|.+..++.|.+++++.+... +... .++.
T Consensus 158 -----------------------------RvYa~Dv~~pm~vVata~r~i~vynL~n~~te--~k~~--------~SpL- 197 (347)
T KOG0647|consen 158 -----------------------------RVYAADVLYPMAVVATAERHIAVYNLENPPTE--FKRI--------ESPL- 197 (347)
T ss_pred -----------------------------eeeehhccCceeEEEecCCcEEEEEcCCCcch--hhhh--------cCcc-
Confidence 1111111111 223334578889998764321 1100 0000
Q ss_pred ccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEE---ec---cC--ccc---------cCCCceEEEEE
Q 003217 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRV---AA---KG--GFG---------DDNRRTEALTT 427 (838)
Q Consensus 365 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v---~~---~g--~~~---------~~~~~v~ala~ 427 (838)
+ -...+++++++....++|+-.|-.-+ +. +. +|. .+...|.+|+|
T Consensus 198 --------k----------~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 198 --------K----------WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred --------c----------ceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEe
Confidence 0 00113334433333344443332211 11 00 111 12345667888
Q ss_pred cCC-CcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCC-EEEEEeeC
Q 003217 428 SID-GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGS-QIWVGYMN 478 (838)
Q Consensus 428 S~d-g~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~-~LasGs~D 478 (838)
.|. |.|++++.||+...||- .-..|++...|..+|+|.++ +|. +.++.+.|
T Consensus 260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 260 HPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 875 66899999999999998 45678888889999998876 566 34444444
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-17 Score=183.15 Aligned_cols=302 Identities=15% Similarity=0.179 Sum_probs=185.7
Q ss_pred EEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCcee-eecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003217 144 QLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE-SVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (838)
Q Consensus 144 ~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~ 221 (838)
.|+.+ +|+.|.++|........ | ...|+. ..| .+.|+.+.+-|....|++++-|.+||+||+.
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~-------------e-e~~lk~~~aH-~nAifDl~wapge~~lVsasGDsT~r~Wdvk 130 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRL-------------E-ERQLKKPLAH-KNAIFDLKWAPGESLLVSASGDSTIRPWDVK 130 (720)
T ss_pred eEEEecCCCceeeecchhhhcch-------------h-hhhhcccccc-cceeEeeccCCCceeEEEccCCceeeeeeec
Confidence 34444 58899999986533210 1 111222 234 8899999999977889999999999999999
Q ss_pred CCccCCCCCcceeE--EeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCcce-eeec---CCCceeeeEEEEeec
Q 003217 222 ARLLDSDDGFGEVL--SWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEK-ALSL---KPEERHTAALIVERS 293 (838)
Q Consensus 222 ~g~~~~~~~~~~~~--~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~-~~~~---~~~~~~~~~~~~~~s 293 (838)
+. +... .+.||++.|.+++|.++.. +++|+.||.|.|||+.-... .+.. .....+..+- ..-.
T Consensus 131 ~s--------~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p-tpsk 201 (720)
T KOG0321|consen 131 TS--------RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP-TPSK 201 (720)
T ss_pred cc--------eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC-CCCc
Confidence 86 3333 4889999999999999876 67999999999999853210 0000 0000000000 0000
Q ss_pred eeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccc
Q 003217 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDE 371 (838)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~ 371 (838)
...-+.+........+ .+.|+.+++- +...|++++ |++|++||+++.......+.-+ . +
T Consensus 202 p~~kr~~k~kA~s~ti-~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~-~--------------~-- 262 (720)
T KOG0321|consen 202 PLKKRIRKWKAASNTI-FSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRG-S--------------D-- 262 (720)
T ss_pred hhhccccccccccCce-eeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCc-c--------------c--
Confidence 0000000000000001 2236667765 455666665 7899999998765422111000 0 0
Q ss_pred eeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC-cEEEEECCCeEEEEcCCC-
Q 003217 372 FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDPNG- 449 (838)
Q Consensus 372 ~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg-~l~Sgs~DgtIrlWD~~g- 449 (838)
+ +... .+ ....+..|..+.-| +|...+.|++|.+|++.+
T Consensus 263 -~---~~t~--sk---------------------------------rs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 263 -K---YPTH--SK---------------------------------RSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred -C---ccCc--cc---------------------------------ceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 0 0000 00 00112233333333 466666799999999954
Q ss_pred --CeeeEeecCCc---cEE-EEEEcCCEEEEEeeCCeEEEEeCC--CcccccccccccCEEEEEeCC---CEEEEEcCCC
Q 003217 450 --NRLQDFQYLPF---AVQ-CLCTFGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAVGA---GYIFTLANHG 518 (838)
Q Consensus 450 --~~l~tl~~H~~---~V~-sls~dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~dg---~~l~S~S~Dg 518 (838)
..+..+.+|.. .|. ++++|+.+|++|+.|....+|.+. ......+.||+-.|.++.+.+ .-+++++.|-
T Consensus 304 s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~ 383 (720)
T KOG0321|consen 304 SISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDF 383 (720)
T ss_pred CcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCc
Confidence 34455555443 232 347899999999999999999987 346788999999999998643 3588999999
Q ss_pred CeeeeecCC
Q 003217 519 GIRGWNVTS 527 (838)
Q Consensus 519 tIrlWdl~s 527 (838)
++++|++..
T Consensus 384 ~~kiW~l~~ 392 (720)
T KOG0321|consen 384 RVKIWRLSN 392 (720)
T ss_pred ceEEEeccC
Confidence 999999844
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.1e-16 Score=172.07 Aligned_cols=383 Identities=12% Similarity=0.109 Sum_probs=227.2
Q ss_pred EEecCCEEEE-ecCCCEEEEeCCCCccccc-cccccccCC--CCCCCCCCceeeecC-CCCeEEEEEcCCCCEEEEEeCC
Q 003217 138 IVCTEEQLWA-GGENGLRVWNLKELYDESE-SDSVSVSKS--KGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRD 212 (838)
Q Consensus 138 l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~-~~~~~~~~~--~~~~~~~p~~~~~~g-~~~V~~la~s~dg~~LaSGs~D 212 (838)
|....+.++- ..++.||+++-++....+. -.+-.+|.- .+-+...-+.+.-.+ -.-..++.||+....|..-..|
T Consensus 266 IcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYnd 345 (1080)
T KOG1408|consen 266 ICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYND 345 (1080)
T ss_pred eeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcC
Confidence 3444554443 5799999999877644321 000011110 000100001111111 1124578899999999999999
Q ss_pred CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec------------CCCEEEeeCCCcEEEEECCCcceeeecCC
Q 003217 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS------------YGDLWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 213 GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~------------dG~L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
..+.|||+..- +.......+.-|...|++|---| .+-+.|+|.|+|||||+++....--.+..
T Consensus 346 hSlYvWDvrD~-----~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrR 420 (1080)
T KOG1408|consen 346 HSLYVWDVRDV-----NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRR 420 (1080)
T ss_pred ceEEEEecccc-----ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeec
Confidence 99999999874 22234556677999998885544 24478999999999999976221111000
Q ss_pred --CceeeeE-EEEeeceeecccc----eeccce-eeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecC
Q 003217 281 --EERHTAA-LIVERSYIDLRSH----LSVNGF-SSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNID 351 (838)
Q Consensus 281 --~~~~~~~-~~~~~s~~~l~~~----~~~~~~-~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~ 351 (838)
-...... ...+.....+... ....++ ..-+...+++++.++++..+++|.. ++++++|+..-+.+.....|
T Consensus 421 Nils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAH 500 (1080)
T KOG1408|consen 421 NILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAH 500 (1080)
T ss_pred ccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecc
Confidence 0000000 0000000000000 000000 0012346899999999999988874 68999999887766666666
Q ss_pred CceEEeeecccC-------cccccccceeeEEEec----------CCCCcceeeeeEeecCc--ceeeecCCc--EEEEe
Q 003217 352 GQIENRVDMSLL-------PDFAMEDEFKTKIVTS----------SKKDKAQSSFGFFQRSR--NAIMGAADA--VRRVA 410 (838)
Q Consensus 352 ~~~~~~~~~s~~-------~~~~~~~~~~~~~~s~----------~~~~~~~~s~~~~~~~~--~~~~g~~~~--v~~v~ 410 (838)
...+-.+.++.- +..+ .+..+.++.. ..+...++++.|..++. +.+.-.+|- .+|+.
T Consensus 501 esEilcLeyS~p~~~~kLLASas--rdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~ 578 (1080)
T KOG1408|consen 501 ESEILCLEYSFPVLTNKLLASAS--RDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVN 578 (1080)
T ss_pred cceeEEEeecCchhhhHhhhhcc--CCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehh
Confidence 543333333221 1111 0000111110 11123445666666552 333322332 22333
Q ss_pred c---cC-ccccCC-----CceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeec---CCccEEEE--EEcCCEEEE
Q 003217 411 A---KG-GFGDDN-----RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY---LPFAVQCL--CTFGSQIWV 474 (838)
Q Consensus 411 ~---~g-~~~~~~-----~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~---H~~~V~sl--s~dG~~Las 474 (838)
. .| .|..+. ..+..+++.|.-. +++++.|..|||+|+ +|+..++|++ |.+..--+ .+.|-||++
T Consensus 579 qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~at 658 (1080)
T KOG1408|consen 579 QKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLAT 658 (1080)
T ss_pred ccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEE
Confidence 2 12 233332 2456788888765 799999999999999 7999999986 43333333 456889999
Q ss_pred EeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 475 GYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 475 Gs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
.+.|.+|.++|.- |+|++.+.||+..|+.+.+ |-+.|+|+|.||.|-+|.+..
T Consensus 659 Scsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 659 SCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999999999965 9999999999999999986 778999999999999999743
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.8e-18 Score=180.16 Aligned_cols=257 Identities=17% Similarity=0.211 Sum_probs=183.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.+.|..+.|-++...|++|+.|..|++|+...+. .....+|.|-.++|+++.|.++++ ++++|.|+.+++|++
T Consensus 175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k------~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK------SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred ccccceeEEccCcchhhhcchhhhhhhhhcccch------hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 6788899998888999999999999999998762 235667888889999999999998 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
......-++. +| +.+|.++-+--....|.+++ |.+|++||+..+.|.++.
T Consensus 249 d~~r~~~TLs-------------------GH----------tdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~ 299 (459)
T KOG0288|consen 249 DSLRLRHTLS-------------------GH----------TDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV 299 (459)
T ss_pred cchhhhhhhc-------------------cc----------ccceeeehhhccccceeeccccchhhhhhhhhhheeccc
Confidence 7633211221 22 34454444443444477777 689999999998887654
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
-+-.+. .+|+.+
T Consensus 300 l~~S~c--------------------------------------------------------------------nDI~~~ 311 (459)
T KOG0288|consen 300 LPGSQC--------------------------------------------------------------------NDIVCS 311 (459)
T ss_pred cccccc--------------------------------------------------------------------cceEec
Confidence 221110 011111
Q ss_pred CCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCCCc-cccccc------ccc
Q 003217 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGN-LLGGWV------AHS 498 (838)
Q Consensus 429 ~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~g~-~i~~l~------gH~ 498 (838)
.-.++||..|++||+||. .+.+++....|. .|++|. ++|..|.+.+.|.++.+.|+.+. ..+++. +|.
T Consensus 312 -~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 312 -ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD 389 (459)
T ss_pred -ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccc
Confidence 113678999999999998 778888888766 899884 57889999999999999999864 334333 344
Q ss_pred cCEEEEEeCCCEEEEEcCCCCeeeeecCCCCCCchhhhhhhhccccccccccceeeEEEEEEeCC
Q 003217 499 SPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQ 563 (838)
Q Consensus 499 ~~V~sla~dg~~l~S~S~DgtIrlWdl~s~~~~d~~~~~~l~~r~~~y~~~~~~~i~~~twNv~~ 563 (838)
-.-..+.+|+.|++.||.||.|.||++.+... . ..+.... ....|+...||-.+
T Consensus 390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKl-E----~~l~~s~------s~~aI~s~~W~~sG 443 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKL-E----KVLSLST------SNAAITSLSWNPSG 443 (459)
T ss_pred cceeEECCCCceeeeccCCCcEEEEEccCceE-E----EEeccCC------CCcceEEEEEcCCC
Confidence 11122347999999999999999999876432 1 1111111 11148888999864
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.8e-16 Score=165.02 Aligned_cols=254 Identities=13% Similarity=0.116 Sum_probs=164.1
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCccC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV-WSGHRDGRIMCWKMNARLLD 226 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~L-aSGs~DGtIrvWd~~~g~~~ 226 (838)
+.|+.|++||+.+...... + .+...+.+++++|+|+.+ ++++.|+.|++||..++
T Consensus 8 ~~d~~v~~~d~~t~~~~~~-----------------~----~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--- 63 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRT-----------------F----PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATG--- 63 (300)
T ss_pred cCCCEEEEEECCCCceEEE-----------------E----ECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCC---
Confidence 5589999999876432211 1 112346789999999876 57788999999999886
Q ss_pred CCCCcceeEEeccccccEEEEEEecCCC-EE-EeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceecc
Q 003217 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (838)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 304 (838)
+....+..|.. +..++|+|+|+ ++ +++.|+.|++||+.+......+..
T Consensus 64 -----~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~------------------------ 113 (300)
T TIGR03866 64 -----EVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV------------------------ 113 (300)
T ss_pred -----cEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC------------------------
Confidence 44455555544 46789999998 54 566799999999966322111100
Q ss_pred ceeeeecCCeEEEEEcCCCCEEEEeCC--CcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCC
Q 003217 305 GFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (838)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~ 382 (838)
......++.++++..++.+.. ..+.+||..+++++..+...
T Consensus 114 ------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~------------------------------- 156 (300)
T TIGR03866 114 ------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD------------------------------- 156 (300)
T ss_pred ------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-------------------------------
Confidence 011234566667777666553 24667788766543221100
Q ss_pred CcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEE-ECCCeEEEEcC-CCCeeeEeecCC
Q 003217 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG-GANGLLLQWDP-NGNRLQDFQYLP 459 (838)
Q Consensus 383 ~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sg-s~DgtIrlWD~-~g~~l~tl~~H~ 459 (838)
..+..++++++|+ ++.+ ..++.|++||+ ++++++.+..+.
T Consensus 157 -------------------------------------~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 199 (300)
T TIGR03866 157 -------------------------------------QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI 199 (300)
T ss_pred -------------------------------------CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc
Confidence 0112466788887 5444 45899999999 677777665332
Q ss_pred -----ccE--EE--EEEcCCEEEEE-eeCCeEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEE-cCCCCeeeeec
Q 003217 460 -----FAV--QC--LCTFGSQIWVG-YMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTL-ANHGGIRGWNV 525 (838)
Q Consensus 460 -----~~V--~s--ls~dG~~LasG-s~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~-S~DgtIrlWdl 525 (838)
..+ .. ++++|++++++ +.++.|.+||++ ++.+..+ .+...+.+++ ++|++|+++ +.+++|++||+
T Consensus 200 ~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 200 PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred cccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 111 12 35678876654 456789999987 5554443 3445677777 478888876 56999999998
Q ss_pred CCCCC
Q 003217 526 TSPGP 530 (838)
Q Consensus 526 ~s~~~ 530 (838)
.+...
T Consensus 279 ~~~~~ 283 (300)
T TIGR03866 279 AALKV 283 (300)
T ss_pred CCCcE
Confidence 76444
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-16 Score=182.63 Aligned_cols=295 Identities=18% Similarity=0.158 Sum_probs=195.7
Q ss_pred eeEEEEecCC--EEEE-e--cCCCEEEEeCCCCccccccccccccCCCCCCC-CCCceeeecCCCCeEEEEEcCCCCEEE
Q 003217 134 FLRTIVCTEE--QLWA-G--GENGLRVWNLKELYDESESDSVSVSKSKGEDG-TAPFKESVKGVSSVMCMVGDEASGVVW 207 (838)
Q Consensus 134 ~~~~l~~~~~--~l~~-g--~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~g~~~V~~la~s~dg~~La 207 (838)
.+.+|..+.+ .+.+ | .|+++++|+.+....... -.++. ......+..|.++|.|+.|+|||++||
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~---------~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA 85 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKE---------EKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA 85 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhh---------hhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence 3667776655 4444 3 589999999865322110 00111 011112222488999999999999999
Q ss_pred EEeCCCcEEEEECCCC----ccCC------CCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceee
Q 003217 208 SGHRDGRIMCWKMNAR----LLDS------DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKAL 276 (838)
Q Consensus 208 SGs~DGtIrvWd~~~g----~~~~------~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~ 276 (838)
+||.|+.|.+|..... .+.+ --..+....+.||.+-|..++++|++. |+|+|-|++|-||+..+.+..-
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence 9999999999998731 1111 013455678899999999999999998 7899999999999987652211
Q ss_pred ecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceE
Q 003217 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIE 355 (838)
Q Consensus 277 ~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~ 355 (838)
. +++| .+.|+-+..++-|..+++-+ |++|++|++.+=.+.+....+-+
T Consensus 166 v-------------------l~~H----------~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~-- 214 (942)
T KOG0973|consen 166 V-------------------LRGH----------QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE-- 214 (942)
T ss_pred e-------------------eecc----------cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh--
Confidence 1 2233 45677788888888888877 57999999654333222211100
Q ss_pred EeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EE
Q 003217 356 NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IW 434 (838)
Q Consensus 356 ~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~ 434 (838)
.. + ..-...-+.+||||. |+
T Consensus 215 -----------------------~~--------------------~----------------~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 215 -----------------------ES--------------------P----------------LTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred -----------------------hC--------------------C----------------CcceeeecccCCCcCeec
Confidence 00 0 000112355778887 44
Q ss_pred EEEC-C---CeEEEEcCC-CCeeeEeecCCccEEEEEEc----------C-----C----EEEEEeeCCeEEEEeCC-Cc
Q 003217 435 TGGA-N---GLLLQWDPN-GNRLQDFQYLPFAVQCLCTF----------G-----S----QIWVGYMNGIVQVLDLE-GN 489 (838)
Q Consensus 435 Sgs~-D---gtIrlWD~~-g~~l~tl~~H~~~V~sls~d----------G-----~----~LasGs~DgtIrlWD~~-g~ 489 (838)
+..+ + .++.|-+-. -++-..|.||..++.++.+. | . .+|+|+.|++|-||... -+
T Consensus 236 s~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred chhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 4332 2 267777763 36677888999999988542 1 1 57899999999999985 23
Q ss_pred c-cccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 490 L-LGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 490 ~-i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
+ .....--...|..+.+ ||-.|+-+|.||+|.+..++.
T Consensus 316 Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 316 PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 3 2222334567888885 688999999999999998753
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-15 Score=172.34 Aligned_cols=349 Identities=18% Similarity=0.277 Sum_probs=213.5
Q ss_pred ceeEEEEec----CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEE
Q 003217 133 CFLRTIVCT----EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (838)
Q Consensus 133 ~~~~~l~~~----~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaS 208 (838)
.++.+|... +.-+.-+++|.+++||+.+...... |.+ . ...|+|+.-+|.-..+|.
T Consensus 160 ~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~-----------------f~~--~-~s~IT~ieqsPaLDVVai 219 (910)
T KOG1539|consen 160 DFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYT-----------------FQE--F-FSRITAIEQSPALDVVAI 219 (910)
T ss_pred CceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEE-----------------ecc--c-ccceeEeccCCcceEEEE
Confidence 345555432 3333346799999999987654321 222 2 568999999999899999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeecCCCceeee
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~ 286 (838)
|..+|+|.++++..+ +.+.+|+--.+.|++++|.-||. |++|..-|.+-+||++.........
T Consensus 220 G~~~G~ViifNlK~d--------kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~------- 284 (910)
T KOG1539|consen 220 GLENGTVIIFNLKFD--------KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR------- 284 (910)
T ss_pred eccCceEEEEEcccC--------cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee-------
Confidence 999999999999987 67888876679999999999997 7899999999999997643221110
Q ss_pred EEEEeeceeecccc-eeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEecc--Cc--cEEEEEecCCceEEeeec-
Q 003217 287 ALIVERSYIDLRSH-LSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDAR--TR--ELLKVFNIDGQIENRVDM- 360 (838)
Q Consensus 287 ~~~~~~s~~~l~~~-~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~--tg--~~l~~l~~~~~~~~~~~~- 360 (838)
.+| +.+.+...++...|...+.. |+.+++|=-. .| ..++.=.+|.+.-..+.+
T Consensus 285 -----------nah~~sv~~~~fl~~epVl~ta~~----------DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy 343 (910)
T KOG1539|consen 285 -----------NAHYGSVTGATFLPGEPVLVTAGA----------DNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFY 343 (910)
T ss_pred -----------ccccCCcccceecCCCceEeeccC----------CCceeEEEeeCCCCcchheeeccCCCCCchheeee
Confidence 011 22222222233333322222 3444444222 22 112222222221100000
Q ss_pred --------ccCccc-----cc-----ccceee-EEEecCC----------CCcceeeeeEeec-C---cceeeecCCcE-
Q 003217 361 --------SLLPDF-----AM-----EDEFKT-KIVTSSK----------KDKAQSSFGFFQR-S---RNAIMGAADAV- 406 (838)
Q Consensus 361 --------s~~~~~-----~~-----~~~~~~-~~~s~~~----------~~~~~~s~~~~~~-~---~~~~~g~~~~v- 406 (838)
+...+. ++ .++.-- ......+ +...+..+++... . .++++.+.+-.
T Consensus 344 ~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~ 423 (910)
T KOG1539|consen 344 GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRS 423 (910)
T ss_pred ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcce
Confidence 000111 10 000000 0000000 0000111111110 0 13344443321
Q ss_pred EEEec-----cCc-------cccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEe---ecCCccEEEEEEcC
Q 003217 407 RRVAA-----KGG-------FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF---QYLPFAVQCLCTFG 469 (838)
Q Consensus 407 ~~v~~-----~g~-------~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl---~~H~~~V~sls~dG 469 (838)
.+.|. .|. |......+.+++.++-|. .+.|+..|+|-++++ .|-....| ..|..+|+.++.|+
T Consensus 424 ~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~ 503 (910)
T KOG1539|consen 424 AYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG 503 (910)
T ss_pred EEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC
Confidence 22222 122 222346788899999998 567888999999999 78777777 47999999999986
Q ss_pred C--EEEEEeeCCeEEEEeCCCc------------------------------------------ccccccccccCEEEEE
Q 003217 470 S--QIWVGYMNGIVQVLDLEGN------------------------------------------LLGGWVAHSSPVIKMA 505 (838)
Q Consensus 470 ~--~LasGs~DgtIrlWD~~g~------------------------------------------~i~~l~gH~~~V~sla 505 (838)
. .+++++.+|.++.||..++ ..+.|.||++.|+++.
T Consensus 504 ~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~ 583 (910)
T KOG1539|consen 504 TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT 583 (910)
T ss_pred CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE
Confidence 4 6999999999999995421 1246789999999987
Q ss_pred --eCCCEEEEEcCCCCeeeeecCCCCCCchhhhh
Q 003217 506 --VGAGYIFTLANHGGIRGWNVTSPGPLDSILCK 537 (838)
Q Consensus 506 --~dg~~l~S~S~DgtIrlWdl~s~~~~d~~~~~ 537 (838)
+||++|+|++-|++||+||+-+...+|.+.-.
T Consensus 584 FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd 617 (910)
T KOG1539|consen 584 FSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD 617 (910)
T ss_pred eCCCCcEEEEeecCCcEEEEeccCcceeeeEecC
Confidence 58999999999999999999998888887643
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-15 Score=168.19 Aligned_cols=279 Identities=17% Similarity=0.250 Sum_probs=206.9
Q ss_pred eeEEEEec--CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecC--CCCeEEEEEcCCCCEEEE
Q 003217 134 FLRTIVCT--EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG--VSSVMCMVGDEASGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g--~~~V~~la~s~dg~~LaS 208 (838)
.++++|.. .++|.+| +|+.|-+||+....... + .++| .+.|-.++|. +++.|+|
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~-----------------~---vi~g~~drsIE~L~W~-e~~RLFS 85 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE-----------------P---VIHGPEDRSIESLAWA-EGGRLFS 85 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceee-----------------E---EEecCCCCceeeEEEc-cCCeEEe
Confidence 47788876 3477775 58999999997643321 1 1222 6689999999 6778999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeE
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~ 287 (838)
.+-+|+|.-||+.++ +.......-.++|++|+.+|.++ ++.|++||.+...+...+. +++.
T Consensus 86 ~g~sg~i~EwDl~~l--------k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~--I~~~-------- 147 (691)
T KOG2048|consen 86 SGLSGSITEWDLHTL--------KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK--ITYK-------- 147 (691)
T ss_pred ecCCceEEEEecccC--------ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCce--EEEE--------
Confidence 999999999999997 56666777789999999999887 7889999977666664322 2211
Q ss_pred EEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecCCceEEeeecccCccc
Q 003217 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (838)
Q Consensus 288 ~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (838)
+.+- ...+.+.++...+++.+|++|+. +.|++||+.+++.++.... +.
T Consensus 148 ----r~l~-------------rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~--~~------------ 196 (691)
T KOG2048|consen 148 ----RSLM-------------RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITM--QL------------ 196 (691)
T ss_pred ----eecc-------------cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeee--cc------------
Confidence 0000 01346778888888888998885 5599999999876542211 00
Q ss_pred ccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEc
Q 003217 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWD 446 (838)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD 446 (838)
...++ +..-.|.+|.+-.|++|++|..-|+|++||
T Consensus 197 -----------d~l~k----------------------------------~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 197 -----------DRLSK----------------------------------REPTIVWSVLFLRDSTIASGDSAGTVTFWD 231 (691)
T ss_pred -----------ccccc----------------------------------CCceEEEEEEEeecCcEEEecCCceEEEEc
Confidence 00000 011224567777899999999999999999
Q ss_pred C-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCCc-----ccccccccccCEEEEEeCCCEEEEEcCCC
Q 003217 447 P-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGN-----LLGGWVAHSSPVIKMAVGAGYIFTLANHG 518 (838)
Q Consensus 447 ~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~-----~i~~l~gH~~~V~sla~dg~~l~S~S~Dg 518 (838)
. .|..++.+..|...|.|++. ++.++.+++.|+.|-.+-.+++ ......+|...|.+++.-+..++||+.|.
T Consensus 232 ~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~ 311 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDF 311 (691)
T ss_pred ccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceee
Confidence 9 79999999999999999976 4579999999999999987643 23445688899999997777999999999
Q ss_pred CeeeeecCC
Q 003217 519 GIRGWNVTS 527 (838)
Q Consensus 519 tIrlWdl~s 527 (838)
++-+=..+.
T Consensus 312 ~l~i~~s~~ 320 (691)
T KOG2048|consen 312 TLAICSSRE 320 (691)
T ss_pred EEEEccccc
Confidence 988766554
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.3e-16 Score=158.05 Aligned_cols=256 Identities=14% Similarity=0.212 Sum_probs=164.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec--CCC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--dG~-L~SgS~DgtIrvW 267 (838)
..-|.|+.||.-|+.+||+|.|++++|||...+ ...+.+...|++|.+.|..|.+-+ .|+ ++++|.|+|++||
T Consensus 13 ~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~----s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 13 KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSD----SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cceeeeeeecccCceeeeccCCCcEEEEeccCC----CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 567999999999999999999999999997654 355677888999999999999865 488 6899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC--CCCEEEEeC-CCcEEEEeccCccE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSFALWDARTREL 344 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~--~~~~V~s~s-~~tI~lWD~~tg~~ 344 (838)
.=.. +...-+. ..+... .++.+- .+.|..+.+.+ -|-++++++ |+++|||++-.---
T Consensus 89 EE~~--~~~~~~~-~~Wv~~----ttl~Ds-------------rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n 148 (361)
T KOG2445|consen 89 EEQE--KSEEAHG-RRWVRR----TTLVDS-------------RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN 148 (361)
T ss_pred eecc--ccccccc-ceeEEE----EEeecC-------------CcceeEEEecchhcceEEEEeccCcEEEEEecCCccc
Confidence 7521 1111110 111110 011111 23455555544 455777766 78899998743111
Q ss_pred EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEE
Q 003217 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (838)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (838)
+...+.. .+++..+ .... .+....-+
T Consensus 149 Ls~W~Lq------------------~Ei~~~~-~pp~-----------------------------------~~~~~~~C 174 (361)
T KOG2445|consen 149 LSQWTLQ------------------HEIQNVI-DPPG-----------------------------------KNKQPCFC 174 (361)
T ss_pred cccchhh------------------hhhhhcc-CCcc-----------------------------------cccCcceE
Confidence 1111000 0000000 0000 00001111
Q ss_pred EEEcC----CCcEEEEECC-----CeEEEEcC--CC---CeeeEeecCCccEEEEEEc---CC---EEEEEeeCCeEEEE
Q 003217 425 LTTSI----DGMIWTGGAN-----GLLLQWDP--NG---NRLQDFQYLPFAVQCLCTF---GS---QIWVGYMNGIVQVL 484 (838)
Q Consensus 425 la~S~----dg~l~Sgs~D-----gtIrlWD~--~g---~~l~tl~~H~~~V~sls~d---G~---~LasGs~DgtIrlW 484 (838)
|.+.+ ...|+.|+.+ +.++||.- .+ ..+.++.+|+.+|+.|++. |+ .||+++.|| |+||
T Consensus 175 vsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~ 253 (361)
T KOG2445|consen 175 VSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIF 253 (361)
T ss_pred EeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEE
Confidence 22221 1246666654 36888976 34 2456677999999998652 54 899999999 9999
Q ss_pred eCCC---------------------cccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 485 DLEG---------------------NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 485 D~~g---------------------~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
.++. +.+..+..|.+.|+.+.+ -|..|.|.|.||.||+|..
T Consensus 254 ~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 254 KVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred EEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 8652 135568899999999986 5888999999999999983
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-17 Score=167.68 Aligned_cols=261 Identities=14% Similarity=0.156 Sum_probs=173.5
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCc
Q 003217 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (838)
Q Consensus 204 ~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~ 282 (838)
..|+|.-+|++++. +....+.||+..|+.++...... +.|+|.|.|.+||.++++.+..++.+
T Consensus 125 srivssFk~~t~~~--------------~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G-- 188 (481)
T KOG0300|consen 125 SRIVSSFKDGTVKF--------------RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG-- 188 (481)
T ss_pred chheeeecCCceeE--------------eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc--
Confidence 35777788888532 44566889999999998876444 56999999999999999887766543
Q ss_pred eeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecc
Q 003217 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMS 361 (838)
Q Consensus 283 ~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s 361 (838)
| .+.|.++.+.+.+..+.+++ |.+..||...-.-. .....
T Consensus 189 -----------------H----------~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~-----vP~~~------- 229 (481)
T KOG0300|consen 189 -----------------H----------TGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE-----VPSNN------- 229 (481)
T ss_pred -----------------c----------ccceeeEEeccccceEEEccCCcchHHHHHhhcCc-----CCCCC-------
Confidence 2 44577788888888887776 67888997532110 00000
Q ss_pred cCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC-cEEEEECCC
Q 003217 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANG 440 (838)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg-~l~Sgs~Dg 440 (838)
...+.+.+++.. -+ ..... +.+ + -.......+|+. .-.|.+|...|.+..+-..| +++++|-|.
T Consensus 230 a~~~hSsEeE~e---~s-De~~~------d~d-~---~~~sD~~tiRvP-l~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 230 APSDHSSEEEEE---HS-DEHNR------DTD-S---SEKSDGHTIRVP-LMRLTGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred CCCCCCchhhhh---cc-ccccc------ccc-c---ccccCCceeeee-eeeeeccccceEehhhhcCcceeeeeeccc
Confidence 000001111100 00 00000 000 0 000011122222 11245566666665554445 499999999
Q ss_pred eEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC--CcccccccccccCEEEEEe-CCCEEEEE
Q 003217 441 LLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV-GAGYIFTL 514 (838)
Q Consensus 441 tIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~-dg~~l~S~ 514 (838)
|..+||+ +|+.++.++||....+-++. .-+.+++.+.|.+.||||.. -..+..|+||++.|+++.+ -+..++|+
T Consensus 295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSg 374 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSG 374 (481)
T ss_pred cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeec
Confidence 9999999 79999999999998886654 34577778889999999986 3458899999999999886 46789999
Q ss_pred cCCCCeeeeecCC-CCCCchh
Q 003217 515 ANHGGIRGWNVTS-PGPLDSI 534 (838)
Q Consensus 515 S~DgtIrlWdl~s-~~~~d~~ 534 (838)
|.|.|||+||+++ ..|+..+
T Consensus 375 SDDrTvKvWdLrNMRsplATI 395 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMRSPLATI 395 (481)
T ss_pred CCCceEEEeeeccccCcceee
Confidence 9999999999876 4455544
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-16 Score=176.86 Aligned_cols=221 Identities=21% Similarity=0.277 Sum_probs=163.9
Q ss_pred CCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003217 142 EEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (838)
Q Consensus 142 ~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~ 220 (838)
+..|.+|. ++.|.|||..+...... +.. .| ..-|.|+++. +..+.+|+.||.|..+|+
T Consensus 229 G~~LavG~~~g~v~iwD~~~~k~~~~-----------------~~~-~h-~~rvg~laW~--~~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 229 GSHLAVGTSDGTVQIWDVKEQKKTRT-----------------LRG-SH-ASRVGSLAWN--SSVLSSGSRDGKILNHDV 287 (484)
T ss_pred CCEEEEeecCCeEEEEehhhcccccc-----------------ccC-Cc-CceeEEEecc--CceEEEecCCCcEEEEEE
Confidence 44666664 78999999876543321 111 13 6679999997 588999999999999999
Q ss_pred CCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeeccc
Q 003217 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (838)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 299 (838)
.... .....+++|+..|..+.+++|+. |+||+.|+.+.|||....+..+.+..
T Consensus 288 R~~~-------~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~------------------- 341 (484)
T KOG0305|consen 288 RISQ-------HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE------------------- 341 (484)
T ss_pred ecch-------hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec-------------------
Confidence 8762 12224899999999999999998 89999999999999854433333322
Q ss_pred ceeccceeeeecCCeEEEEEcC-CCCEEEEeC---CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeE
Q 003217 300 HLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG---FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (838)
Q Consensus 300 ~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s---~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (838)
| ...|+.++..+ ....|++|+ |++|++||..+|+.+......+|
T Consensus 342 H----------~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ---------------------- 389 (484)
T KOG0305|consen 342 H----------TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQ---------------------- 389 (484)
T ss_pred c----------ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCc----------------------
Confidence 1 44677777765 556777776 57899999999988655432222
Q ss_pred EEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEE--EECCCeEEEEcC-CCCe
Q 003217 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWT--GGANGLLLQWDP-NGNR 451 (838)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~S--gs~DgtIrlWD~-~g~~ 451 (838)
|..|.+++... |++ |..++.|.||+. +-+.
T Consensus 390 ----------------------------------------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~ 423 (484)
T KOG0305|consen 390 ----------------------------------------------VCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL 423 (484)
T ss_pred ----------------------------------------------eeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence 22344444442 443 335678999999 7789
Q ss_pred eeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC
Q 003217 452 LQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 452 l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (838)
+..+.+|+.+|..++ +||..|++|+.|.|+++|++=
T Consensus 424 ~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 424 VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred eeeecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 999999999999874 689999999999999999964
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.9e-17 Score=166.07 Aligned_cols=252 Identities=16% Similarity=0.173 Sum_probs=170.4
Q ss_pred ceeEEeccccccEEEEEEecCCCE-EEeeCCCcEEEEECCCc-cee--eecCCCceeeeEEEEeeceeecccceecccee
Q 003217 232 GEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAI-EKA--LSLKPEERHTAALIVERSYIDLRSHLSVNGFS 307 (838)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~~~~-~~~--~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~ 307 (838)
.+...+..|++++.+.+||+||.| +|||.|..|||.|++.. .+. ...... ...+...+ ...+..|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~-~~qa~hPv---IRTlYDH------- 171 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISG-DTQARHPV---IRTLYDH------- 171 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccC-CcccCCce---Eeehhhc-------
Confidence 345567889999999999999995 79999999999999741 111 000000 00000000 1112222
Q ss_pred eeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcce
Q 003217 308 SILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQ 386 (838)
Q Consensus 308 ~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~ 386 (838)
..+|.+|.+.+....+++++ |++|+++|...-..-+.|
T Consensus 172 ---~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~-------------------------------------- 210 (430)
T KOG0640|consen 172 ---VDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAF-------------------------------------- 210 (430)
T ss_pred ---cCcccceeecchhheEEeccCCCeEEEEecccHHHHHHH--------------------------------------
Confidence 56788999998888888887 689999997521110000
Q ss_pred eeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEe---ecCCcc
Q 003217 387 SSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF---QYLPFA 461 (838)
Q Consensus 387 ~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl---~~H~~~ 461 (838)
....+...|.++.|.|.|. |+.|..-.++++||+ +-+|.-.- .+|++.
T Consensus 211 ---------------------------K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 211 ---------------------------KVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred ---------------------------HHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 0112345577888989887 677776679999999 56775433 369999
Q ss_pred EEEEEE--cCCEEEEEeeCCeEEEEe-CCCccccccc-ccccC-EEEEE--eCCCEEEEEcCCCCeeeeecCCCCCCchh
Q 003217 462 VQCLCT--FGSQIWVGYMNGIVQVLD-LEGNLLGGWV-AHSSP-VIKMA--VGAGYIFTLANHGGIRGWNVTSPGPLDSI 534 (838)
Q Consensus 462 V~sls~--dG~~LasGs~DgtIrlWD-~~g~~i~~l~-gH~~~-V~sla--~dg~~l~S~S~DgtIrlWdl~s~~~~d~~ 534 (838)
|+++.. .|+.-++|+.||.|+||| +.++|+.++. +|.+. |.+.. .++++++|.+.|.+|++|.+.+..++...
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 999954 588889999999999999 4588988875 78764 55554 48999999999999999998876654322
Q ss_pred h------------hhhhhccccccccccceeeEEEEEEeC
Q 003217 535 L------------CKELAGKEFLYTRMENLKILAGTWNVG 562 (838)
Q Consensus 535 ~------------~~~l~~r~~~y~~~~~~~i~~~twNv~ 562 (838)
. +..|+..+.+-.-..+....+++||.-
T Consensus 344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaR 383 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDAR 383 (430)
T ss_pred ecCCcccchhhhhhhhhcCccceEEccccccCceeecccc
Confidence 1 122333344333344455778888874
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-16 Score=170.72 Aligned_cols=268 Identities=16% Similarity=0.228 Sum_probs=176.4
Q ss_pred EEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCcee--eecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003217 137 TIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE--SVKGVSSVMCMVGDEASGVVWSGHRDGR 214 (838)
Q Consensus 137 ~l~~~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~g~~~V~~la~s~dg~~LaSGs~DGt 214 (838)
+|....+.+|+|.-++|+|||+.... +..|... -+...+-+.++.+.|||+.|.+|++-.+
T Consensus 426 tIS~~trhVyTgGkgcVKVWdis~pg-----------------~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeast 488 (705)
T KOG0639|consen 426 TISNPTRHVYTGGKGCVKVWDISQPG-----------------NKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAST 488 (705)
T ss_pred EecCCcceeEecCCCeEEEeeccCCC-----------------CCCccccccccCcccceeeeEecCCCceEEeccccce
Confidence 44444669999999999999995421 1111100 0111567888899999999999999999
Q ss_pred EEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCE-EEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeec
Q 003217 215 IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (838)
Q Consensus 215 IrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (838)
+-|||+.... .+.+ ..+..-.-+-.+++.+||.++ +++..||.|+|||+.......
T Consensus 489 lsiWDLAapT----prik--aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr----------------- 545 (705)
T KOG0639|consen 489 LSIWDLAAPT----PRIK--AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR----------------- 545 (705)
T ss_pred eeeeeccCCC----cchh--hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeee-----------------
Confidence 9999998852 1111 122222335678899999995 699999999999996532211
Q ss_pred eeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccce
Q 003217 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (838)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (838)
++.+| +..+.|+..+++|.++|+|+ |.+|+-||++++..+....-..|+
T Consensus 546 --qfqGh----------tDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQI------------------ 595 (705)
T KOG0639|consen 546 --QFQGH----------TDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQI------------------ 595 (705)
T ss_pred --cccCC----------CCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhh------------------
Confidence 22233 44567888889999999999 789999999987654321111111
Q ss_pred eeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCCCCe
Q 003217 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNR 451 (838)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g~~ 451 (838)
-+|...|.+- ++.|-.++.+.+-..++..
T Consensus 596 --------------------------------------------------fSLg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 596 --------------------------------------------------FSLGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred --------------------------------------------------eecccCCCccceeeecccCcEEEEecCCcc
Confidence 1222334444 5666666666666666655
Q ss_pred eeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEE--EEeCCCEEEEEcCCCCeeeeec
Q 003217 452 LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK--MAVGAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 452 l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s--la~dg~~l~S~S~DgtIrlWdl 525 (838)
...+..|.+-|.+|.+ -|+++++.+.|.-+..|..- |.-+-..+- ++.|++ |..|.++|+|||.|+...++.+
T Consensus 626 kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 626 KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 5666677777777754 57888887888888888764 543333322 344554 4567788888888877666653
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-15 Score=153.05 Aligned_cols=268 Identities=14% Similarity=0.132 Sum_probs=178.6
Q ss_pred CceeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecC-CCCeEEEEEcCCCCEEE
Q 003217 132 GCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVW 207 (838)
Q Consensus 132 ~~~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-~~~V~~la~s~dg~~La 207 (838)
+..+.+|..+ +..|.+ ++|.+|++||..++..... ++. .-.|-++.|-.....+.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t---------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT---------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE---------------------eecccccccEEEEecCCceEE
Confidence 3456677765 335555 4577999999977654321 110 11345555655555566
Q ss_pred EEeC--CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCcee
Q 003217 208 SGHR--DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (838)
Q Consensus 208 SGs~--DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~ 284 (838)
-++. |.+||.-++.+. +.++-|.||...|++|..+|-+. ++|+|.|++||+||+....+...+..
T Consensus 73 ~sStk~d~tIryLsl~dN--------kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~---- 140 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDN--------KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL---- 140 (311)
T ss_pred EccCCCCCceEEEEeecC--------ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec----
Confidence 6665 889999999987 78899999999999999999776 78999999999999975443322111
Q ss_pred eeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCc--cEEEEEecCCceEEeeecc
Q 003217 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTR--ELLKVFNIDGQIENRVDMS 361 (838)
Q Consensus 285 ~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg--~~l~~l~~~~~~~~~~~~s 361 (838)
..--+.|+++.|-..+.+.. ..|+|+|++.- .+-.+|....
T Consensus 141 ---------------------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~--------- 184 (311)
T KOG1446|consen 141 ---------------------------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD--------- 184 (311)
T ss_pred ---------------------------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC---------
Confidence 01113456777766666654 38999999752 2222222110
Q ss_pred cCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEE-Eec-cCc----cccCCC---ceEEEEEcCCCc
Q 003217 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR-VAA-KGG----FGDDNR---RTEALTTSIDGM 432 (838)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~-v~~-~g~----~~~~~~---~v~ala~S~dg~ 432 (838)
. ....-..+.|+++++.+++.+..+... +.. .|+ |..+.. -.....|+||++
T Consensus 185 -------~------------~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~ 245 (311)
T KOG1446|consen 185 -------N------------DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK 245 (311)
T ss_pred -------C------------CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence 0 011112356777777777766655433 332 332 322221 123456899999
Q ss_pred -EEEEECCCeEEEEcC-CCCeeeEeec-CCccEEEEEEcCCEEEEEeeCCeEEEEeCC
Q 003217 433 -IWTGGANGLLLQWDP-NGNRLQDFQY-LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 433 -l~Sgs~DgtIrlWD~-~g~~l~tl~~-H~~~V~sls~dG~~LasGs~DgtIrlWD~~ 487 (838)
+++|+.||+|.+|++ +|+.+..+.+ +..++.|+-+..++..-.+.+..+-.|=.+
T Consensus 246 Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 246 FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecc
Confidence 788889999999999 7999888888 788999999888877777788889999654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-15 Score=156.94 Aligned_cols=287 Identities=16% Similarity=0.134 Sum_probs=168.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeE-EeccccccEEEEEEecCCC--EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVL-SWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~-~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvW 267 (838)
...|+||+|+.||+.|+|.+.|++||+|++..-. ....+.++ .+. -+--+.|+|+||-+ +++.-...+++++
T Consensus 86 ~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~---~~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 86 KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFE---NKEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred CCceeeeEEcCCCceeEEEeCCceEEEEecchhh---hhhhhHhhcccc--CCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 7799999999999999999999999999987521 01111111 111 12346789999987 4677788899999
Q ss_pred ECCCcce-eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEE
Q 003217 268 PWEAIEK-ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELL 345 (838)
Q Consensus 268 d~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l 345 (838)
.+...+. .++++. +-+.++ + +.....-++..+-....+..|.+++ +.+|.|||++ |+.+
T Consensus 161 k~~K~~dG~~~~~~--------------v~~D~~-~---f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L 221 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHF--------------VHIDNL-E---FERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLL 221 (420)
T ss_pred EeeecccCCCCccc--------------cccccc-c---cchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Ccee
Confidence 8753211 111110 000000 0 0000012233333333444566666 5679999999 8888
Q ss_pred EEEecCCceEEeeecccCcccc----cccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCc
Q 003217 346 KVFNIDGQIENRVDMSLLPDFA----MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (838)
Q Consensus 346 ~~l~~~~~~~~~~~~s~~~~~~----~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~ 421 (838)
.+.............++...+. +..++++|-.--.++ |+-..+.|+ -.+.+|...
T Consensus 222 ~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kd------------------G~fqev~rv---f~LkGH~sa 280 (420)
T KOG2096|consen 222 QSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKD------------------GTFQEVKRV---FSLKGHQSA 280 (420)
T ss_pred eeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccC------------------cchhhhhhh---heeccchhh
Confidence 7654321111112233322221 112222111000000 000011111 124568888
Q ss_pred eEEEEEcCCCc-EEEEECCCeEEEEcCC-----CC---eeeEee-----cCCccEE-EEEEcCCEEEEEeeCCeEEEEeC
Q 003217 422 TEALTTSIDGM-IWTGGANGLLLQWDPN-----GN---RLQDFQ-----YLPFAVQ-CLCTFGSQIWVGYMNGIVQVLDL 486 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs~DgtIrlWD~~-----g~---~l~tl~-----~H~~~V~-sls~dG~~LasGs~DgtIrlWD~ 486 (838)
|.+++||++.+ +++.|.||++|+||.+ ++ .++++. ...+++. .+++.|+.||. +...+|+++..
T Consensus 281 V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~-s~gs~l~~~~s 359 (420)
T KOG2096|consen 281 VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV-SFGSDLKVFAS 359 (420)
T ss_pred eeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe-ecCCceEEEEc
Confidence 99999999986 9999999999999973 33 233331 1123443 56788988877 55778999998
Q ss_pred C-Ccccccc-cccccCEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 487 E-GNLLGGW-VAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 487 ~-g~~i~~l-~gH~~~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
+ |+-.-.+ ..|...|.+|++ +|++++|++ |.-+|+..
T Consensus 360 e~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 360 EDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred ccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 7 6644444 579999999985 789999987 56677754
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-15 Score=153.46 Aligned_cols=242 Identities=15% Similarity=0.165 Sum_probs=145.5
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003217 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNAR 223 (838)
Q Consensus 144 ~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g 223 (838)
.|.++-|+++|+||....... ..+.+..|+++++|-+ -..+++|+-||.||+.|++++
T Consensus 28 LLvssWDgslrlYdv~~~~l~---------------------~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 28 LLVSSWDGSLRLYDVPANSLK---------------------LKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred EEEEeccCcEEEEeccchhhh---------------------hheecCCceeeeeccC-CceEEEeccCceEEEEEecCC
Confidence 455567999999998653211 1112277999999985 578999999999999999996
Q ss_pred ccCCCCCcceeEEeccccccEEEEEEecC-CCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeeccccee
Q 003217 224 LLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLS 302 (838)
Q Consensus 224 ~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~ 302 (838)
....+..|..+|.+|.+++. |.++|||+|++||+||............
T Consensus 86 ---------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~---------------------- 134 (323)
T KOG1036|consen 86 ---------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ---------------------- 134 (323)
T ss_pred ---------cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc----------------------
Confidence 34556789999999999974 5589999999999999854111111000
Q ss_pred ccceeeeecCCeEEEEEcCCCCEEEE-eCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCC
Q 003217 303 VNGFSSILTSDIKNLLSDHSRAKVWS-AGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSK 381 (838)
Q Consensus 303 ~~~~~~~~s~~v~~las~~~~~~V~s-~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~ 381 (838)
..+|.++.. .+.++.. +.+..+.+||+++-..--.-. .... +.
T Consensus 135 --------~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~r-eS~l------------------ky------- 178 (323)
T KOG1036|consen 135 --------GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRR-ESSL------------------KY------- 178 (323)
T ss_pred --------CceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhc-cccc------------------ee-------
Confidence 123333333 3445544 557789999998743210000 0000 00
Q ss_pred CCcceeeeeEeecCcceeeecCCcEEEEec---c-----C--ccc---------cCCCceEEEEEcCC-CcEEEEECCCe
Q 003217 382 KDKAQSSFGFFQRSRNAIMGAADAVRRVAA---K-----G--GFG---------DDNRRTEALTTSID-GMIWTGGANGL 441 (838)
Q Consensus 382 ~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~---~-----g--~~~---------~~~~~v~ala~S~d-g~l~Sgs~Dgt 441 (838)
...++.+.|+..--..++-+|-..+.. . . .|. ....+|.+++|+|- |+++||+.||.
T Consensus 179 ---qtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~ 255 (323)
T KOG1036|consen 179 ---QTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGI 255 (323)
T ss_pred ---EEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCce
Confidence 000122222111112222222111111 0 0 011 11236777888775 55888888888
Q ss_pred EEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEee
Q 003217 442 LLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYM 477 (838)
Q Consensus 442 IrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~ 477 (838)
|-+||+ +.+++..|......|-++++ +|..||+|++
T Consensus 256 V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 256 VNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 888888 56777777666666776655 6778887763
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=171.19 Aligned_cols=236 Identities=19% Similarity=0.320 Sum_probs=173.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..-|.+++++...+.++||++ |.|||||+.... ...+... +....-.+.|.++.+.|||+ |++|++-.++-|||+
T Consensus 419 GEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg--~k~Pvsq-Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPG--NKSPVSQ-LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred CcEEEEEEecCCcceeEecCC-CeEEEeeccCCC--CCCcccc-ccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 446777888988999999987 779999997641 1111111 11223357899999999998 999999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEE-EEeCCCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKV-WSAGFLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V-~s~s~~tI~lWD~~tg~~l~~l 348 (838)
.+-...+.... +.. ......|+.+++.... .|++++.|.|||+++..+++.|
T Consensus 495 AapTprikael---------------------tss------apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqf 547 (705)
T KOG0639|consen 495 AAPTPRIKAEL---------------------TSS------APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQF 547 (705)
T ss_pred cCCCcchhhhc---------------------CCc------chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecc
Confidence 76433222111 000 1223445556555443 3556889999999877665555
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
.+| ...+.++.++
T Consensus 548 qGh-------------------------------------------------------------------tDGascIdis 560 (705)
T KOG0639|consen 548 QGH-------------------------------------------------------------------TDGASCIDIS 560 (705)
T ss_pred cCC-------------------------------------------------------------------CCCceeEEec
Confidence 433 2223467788
Q ss_pred CCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCCCcccccccccccCEEEE
Q 003217 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKM 504 (838)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sl 504 (838)
+||+ ||+|+-|++||.||+ +|+.++...- ++.|.++ ++.|.+|++|-+.+.+.|....+.....+..|.+.|.+|
T Consensus 561 ~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSl 639 (705)
T KOG0639|consen 561 KDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSL 639 (705)
T ss_pred CCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEE
Confidence 8987 999999999999999 7876544321 4578887 578999999999999999998887777888999999998
Q ss_pred Ee--CCCEEEEEcCCCCeeeeec
Q 003217 505 AV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 505 a~--dg~~l~S~S~DgtIrlWdl 525 (838)
.+ .|++.+|.+.|+-+..|..
T Consensus 640 KFa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 640 KFAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred EecccCceeeecCchhhhhhccC
Confidence 75 7999999999999999984
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-17 Score=184.88 Aligned_cols=220 Identities=21% Similarity=0.316 Sum_probs=166.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
...|.|+..-..++.+++|+.|-.+-+|.+... ..+..|.||..+|-||.|+.+-. |++|+.||+||+||+
T Consensus 28 saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--------~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 28 SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--------NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhceeeeeccceeeccCCCceeeccccccCC--------chhheeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence 446777776556789999999999999998765 45667999999999999999766 679999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
+..+..-+++ +| ..++..+.+.+-+...++++ +..+++||.+...|.+.+
T Consensus 100 eeAk~vrtLt-------------------gh----------~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~ 150 (825)
T KOG0267|consen 100 EEAKIVRTLT-------------------GH----------LLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY 150 (825)
T ss_pred hhhhhhhhhh-------------------cc----------ccCcceeeeccceEEeccccccccceehhhhccCceeee
Confidence 7643211111 11 22344555666665555555 456899998866665544
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
.+ |...|..+.|+
T Consensus 151 ~s-------------------------------------------------------------------~~~vv~~l~ls 163 (825)
T KOG0267|consen 151 KS-------------------------------------------------------------------HTRVVDVLRLS 163 (825)
T ss_pred cC-------------------------------------------------------------------CcceeEEEeec
Confidence 32 22334567899
Q ss_pred CCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcC--CEEEEEeeCCeEEEEeCC-CcccccccccccCEEE
Q 003217 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (838)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s 503 (838)
|+|+ +++|++|.++++||. .|+.+.+|..|...|.++.++. -.+++|+.|++|++||++ -..+.....-...|.+
T Consensus 164 P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~ 243 (825)
T KOG0267|consen 164 PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRS 243 (825)
T ss_pred CCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCcee
Confidence 9997 689999999999999 7999999999999999987653 388899999999999998 4667777777888999
Q ss_pred EEe--CCCEEEEE
Q 003217 504 MAV--GAGYIFTL 514 (838)
Q Consensus 504 la~--dg~~l~S~ 514 (838)
+++ ++..+++|
T Consensus 244 ~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 244 LAFNPDGKIVLSG 256 (825)
T ss_pred eeecCCceeeecC
Confidence 886 44445544
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.8e-15 Score=152.22 Aligned_cols=257 Identities=15% Similarity=0.224 Sum_probs=163.6
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
...|.+|+||| ...+++.||.||+||+|+++... . -.....+.|.++|.+++|+.||. +++|+-|+.+|+||
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-----~-~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG-----Q-LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCC-----c-ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 45799999999 55677799999999999998721 0 11234567999999999999997 68999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCC--CEEEEeCC-CcEEEEeccCccEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR--AKVWSAGF-LSFALWDARTRELL 345 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~--~~V~s~s~-~tI~lWD~~tg~~l 345 (838)
+.+++... +- .| ...++.+..-... ..|.+|++ +||+.||.+...++
T Consensus 101 L~S~Q~~~-v~-------------------~H----------d~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv 150 (347)
T KOG0647|consen 101 LASGQVSQ-VA-------------------AH----------DAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV 150 (347)
T ss_pred ccCCCeee-ee-------------------ec----------ccceeEEEEecCCCcceeEecccccceeecccCCCCee
Confidence 98753211 10 01 2234444432222 36778884 79999999998887
Q ss_pred EEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCC-cEEEEecc-C--cccc----
Q 003217 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK-G--GFGD---- 417 (838)
Q Consensus 346 ~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~-~v~~v~~~-g--~~~~---- 417 (838)
.++......- .+.. .-.+. .++.++ ++..++.. + .+..
T Consensus 151 ~t~~LPeRvY---a~Dv--------~~pm~-----------------------vVata~r~i~vynL~n~~te~k~~~Sp 196 (347)
T KOG0647|consen 151 ATLQLPERVY---AADV--------LYPMA-----------------------VVATAERHIAVYNLENPPTEFKRIESP 196 (347)
T ss_pred eeeeccceee---ehhc--------cCcee-----------------------EEEecCCcEEEEEcCCCcchhhhhcCc
Confidence 7765443221 1000 00001 111111 11111110 0 0111
Q ss_pred CCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CC--CeeeEeecCCc---------cEEEEEEc--CCEEEEEeeCCeEE
Q 003217 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG--NRLQDFQYLPF---------AVQCLCTF--GSQIWVGYMNGIVQ 482 (838)
Q Consensus 418 ~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g--~~l~tl~~H~~---------~V~sls~d--G~~LasGs~DgtIr 482 (838)
-...+++|+.-+|.. .+.|+-.|.+-+-.+ .+ +.--+|+.|.. +|++|++. -..|+++++||++.
T Consensus 197 Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~ 276 (347)
T KOG0647|consen 197 LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFS 276 (347)
T ss_pred ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEE
Confidence 122455666544443 488999998888887 44 44455666752 45566664 34889999999999
Q ss_pred EEeCC-CcccccccccccCEEEEEe--CCCEEE-EEcCC
Q 003217 483 VLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIF-TLANH 517 (838)
Q Consensus 483 lWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~-S~S~D 517 (838)
.||-. ..-+.+..-|..+|.+-.+ +|++++ ..|.|
T Consensus 277 FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 277 FWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred EecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 99976 3456777889999998776 566554 55666
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-16 Score=169.52 Aligned_cols=253 Identities=18% Similarity=0.236 Sum_probs=161.7
Q ss_pred eeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeec
Q 003217 233 EVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILT 311 (838)
Q Consensus 233 ~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s 311 (838)
....+++|+..|+++++.|.|. ++|||-|.+||.||............. + ....+
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~---------------l---------~P~E~ 214 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQ---------------L---------QPCET 214 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhc---------------c---------Ccccc
Confidence 3456899999999999999996 999999999999999763322211100 0 00113
Q ss_pred CCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeee
Q 003217 312 SDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFG 390 (838)
Q Consensus 312 ~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~ 390 (838)
..++.+..+..+..|.+.+ .-..+|+|-.--+.+.+..++.-+. + ..
T Consensus 215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~---D-----------------m~------------ 262 (641)
T KOG0772|consen 215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIR---D-----------------MY------------ 262 (641)
T ss_pred cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhh---h-----------------hh------------
Confidence 3566777776666555443 3456677744333322222211110 0 00
Q ss_pred EeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc--EEEEECCCeEEEEcCC--CCeeeEeec-----CCcc
Q 003217 391 FFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPN--GNRLQDFQY-----LPFA 461 (838)
Q Consensus 391 ~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~--l~Sgs~DgtIrlWD~~--g~~l~tl~~-----H~~~ 461 (838)
.-.+|...+.+..+.|+.+ +++++.||++|+||++ .+.++.|.. -.-+
T Consensus 263 -----------------------nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 263 -----------------------NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred -----------------------ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 0123444555666777654 8999999999999994 244444442 2224
Q ss_pred EEEEE--EcCCEEEEEeeCCeEEEEeCCCc----cccccccccc--CEEEEEe--CCCEEEEEcCCCCeeeeecCCCC-C
Q 003217 462 VQCLC--TFGSQIWVGYMNGIVQVLDLEGN----LLGGWVAHSS--PVIKMAV--GAGYIFTLANHGGIRGWNVTSPG-P 530 (838)
Q Consensus 462 V~sls--~dG~~LasGs~DgtIrlWD~~g~----~i~~l~gH~~--~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~-~ 530 (838)
+++.+ .||++||+|..||.|++||..+. ....-.+|.. .|+||.+ ||++|+|-|.|+++|+||++.+. |
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 44544 58999999999999999997532 2445578988 8999985 89999999999999999998754 4
Q ss_pred Cchhh--hhhhhccccccccccceeeEEEEEEeCCCC
Q 003217 531 LDSIL--CKELAGKEFLYTRMENLKILAGTWNVGQGR 565 (838)
Q Consensus 531 ~d~~~--~~~l~~r~~~y~~~~~~~i~~~twNv~~~~ 565 (838)
+.... .+.+..-.+.|+....+ |+.||=-.++..
T Consensus 400 L~~~tgL~t~~~~tdc~FSPd~kl-i~TGtS~~~~~~ 435 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSPDDKL-ILTGTSAPNGMT 435 (641)
T ss_pred hhhhcCCCccCCCCccccCCCceE-EEecccccCCCC
Confidence 43322 23344455666665554 556655555443
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.3e-16 Score=166.14 Aligned_cols=234 Identities=20% Similarity=0.280 Sum_probs=157.3
Q ss_pred eEEEEecCC--EEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 135 LRTIVCTEE--QLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 135 ~~~l~~~~~--~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
+.+|+.++. .|++| --+.|++|.+.++.-... + +.| -.+|+|+.|+.||.+|+|||+
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v-----------------~--~aH-YQ~ITcL~fs~dgs~iiTgsk 143 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNV-----------------L--SAH-YQSITCLKFSDDGSHIITGSK 143 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHH-----------------H--Hhh-ccceeEEEEeCCCcEEEecCC
Confidence 557776655 45556 467999999987654321 1 233 779999999999999999999
Q ss_pred CCcEEEEECCCCcc-CCCCCcceeEEeccccccEEEEEEecCC---CEEEeeCCCcEEEEECCCcceeeecCCCceeeeE
Q 003217 212 DGRIMCWKMNARLL-DSDDGFGEVLSWQAHRGPVLSLCISSYG---DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (838)
Q Consensus 212 DGtIrvWd~~~g~~-~~~~~~~~~~~l~gH~~~V~slafs~dG---~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~ 287 (838)
||.|.+|.+..-.. +.....+....|..|+-+|+.+...+-| +|+|+|.|.|+|+||+..+.-.++..
T Consensus 144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-------- 215 (476)
T KOG0646|consen 144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-------- 215 (476)
T ss_pred CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--------
Confidence 99999999754211 1122346678899999999999998754 48999999999999997654332221
Q ss_pred EEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecCCceEEeeecccCccc
Q 003217 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (838)
Q Consensus 288 ~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (838)
....+++++.++.+..++.|+. +.|.+-++.+- .++..
T Consensus 216 ----------------------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~--------~~~~~----------- 254 (476)
T KOG0646|consen 216 ----------------------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKL--------SGQSA----------- 254 (476)
T ss_pred ----------------------cCCcceeEEEcccccEEEecCCcceEEeeehhcC--------Ccccc-----------
Confidence 1335678888888888888874 45554443210 01100
Q ss_pred ccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEE
Q 003217 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQW 445 (838)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlW 445 (838)
.++ .... .+.....+.++|+.+ ...|.+|+++-||. |+||+.||.|++|
T Consensus 255 ----~v~---~k~~---------~~~~t~~~~~~Gh~~--------------~~~ITcLais~DgtlLlSGd~dg~VcvW 304 (476)
T KOG0646|consen 255 ----GVN---QKGR---------HEENTQINVLVGHEN--------------ESAITCLAISTDGTLLLSGDEDGKVCVW 304 (476)
T ss_pred ----ccc---cccc---------ccccceeeeeccccC--------------CcceeEEEEecCccEEEeeCCCCCEEEE
Confidence 000 0000 000001122233221 13788999999998 6899999999999
Q ss_pred cC-CCCeeeEeecCCccEEEEEE
Q 003217 446 DP-NGNRLQDFQYLPFAVQCLCT 467 (838)
Q Consensus 446 D~-~g~~l~tl~~H~~~V~sls~ 467 (838)
|+ .-+|++++....++|+.+..
T Consensus 305 di~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 305 DIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred ecchHHHHHHHhhhccccceeEe
Confidence 99 67899998866778887754
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-15 Score=163.51 Aligned_cols=288 Identities=17% Similarity=0.189 Sum_probs=181.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 190 GVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 190 g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
|+..|.+++++|.|-.++|||.|.+|+.||+.+-. .+...|+.+.--..| .|+++.||+.|. |+..|....+||.|
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMd-as~~~fr~l~P~E~h--~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMD-ASMRSFRQLQPCETH--QINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEeccccc-ccchhhhccCccccc--ccceeeecCCCCeEEEEecCcceeEEc
Confidence 37789999999999999999999999999997631 111234433333444 799999999987 55555556899999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeeccc-ceeccceeeeecCCeEEEEEcCCC-CEEEEe-CCCcEEEEeccC-ccE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRS-HLSVNGFSSILTSDIKNLLSDHSR-AKVWSA-GFLSFALWDART-REL 344 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~-~~~~~~~~~~~s~~v~~las~~~~-~~V~s~-s~~tI~lWD~~t-g~~ 344 (838)
.+..+. ..+...... .+++.. .+++. .+.+.+..+.. ..+.++ .|++++|||+.. .+.
T Consensus 243 RdG~~~-~e~~KGDQY---------I~Dm~nTKGHia--------~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 243 RDGFEI-VEFSKGDQY---------IRDMYNTKGHIA--------ELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred cCCcee-eeeeccchh---------hhhhhccCCcee--------eeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence 876332 111111111 112211 11111 23333333322 234444 478999999965 333
Q ss_pred EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccc--------
Q 003217 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG-------- 416 (838)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~-------- 416 (838)
++++....+- .+.....+.+|.+.+..+..|..+|.+.+|..+...
T Consensus 305 ~qVik~k~~~--------------------------g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk 358 (641)
T KOG0772|consen 305 LQVIKTKPAG--------------------------GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK 358 (641)
T ss_pred eeEEeeccCC--------------------------CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEee
Confidence 4444322110 011112234455555555566667766666533211
Q ss_pred -cCCC--ceEEEEEcCCCc-EEEEECCCeEEEEcC-C-CCeeeEeecCC----ccEEEEEEcCCEEEEEee------CCe
Q 003217 417 -DDNR--RTEALTTSIDGM-IWTGGANGLLLQWDP-N-GNRLQDFQYLP----FAVQCLCTFGSQIWVGYM------NGI 480 (838)
Q Consensus 417 -~~~~--~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~-g~~l~tl~~H~----~~V~sls~dG~~LasGs~------Dgt 480 (838)
.|.. .|.+|+||+||+ |+|-+.|+++|+||+ + .+++.+.++-. ..=.|++++.+.|++|++ .|+
T Consensus 359 ~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~ 438 (641)
T KOG0772|consen 359 DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGT 438 (641)
T ss_pred eccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCce
Confidence 1333 789999999998 899999999999999 3 47777766522 222366788889999874 478
Q ss_pred EEEEeCCC-cccccccccccCEEEEEeCCC--EEEEEcCCCCeeeee
Q 003217 481 VQVLDLEG-NLLGGWVAHSSPVIKMAVGAG--YIFTLANHGGIRGWN 524 (838)
Q Consensus 481 IrlWD~~g-~~i~~l~gH~~~V~sla~dg~--~l~S~S~DgtIrlWd 524 (838)
+.++|... ..+..+.-.+..|..+.++++ .|+.++.||+++++-
T Consensus 439 L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 439 LFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 99999753 444554444677888888876 588889999999864
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.2e-16 Score=158.04 Aligned_cols=103 Identities=19% Similarity=0.227 Sum_probs=82.9
Q ss_pred EEEcCCCc-EEEEECCCeEEEEcCCCCeeeEeecCC--ccEEEEEEcCCEEEEEeeCCeEEEEeC----CCc-----ccc
Q 003217 425 LTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLP--FAVQCLCTFGSQIWVGYMNGIVQVLDL----EGN-----LLG 492 (838)
Q Consensus 425 la~S~dg~-l~Sgs~DgtIrlWD~~g~~l~tl~~H~--~~V~sls~dG~~LasGs~DgtIrlWD~----~g~-----~i~ 492 (838)
+-+..++. |.|++.|.+|.||+++|+.++++.... +.-..++++|++|++++.---|++|.+ .|. ..-
T Consensus 193 iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf 272 (420)
T KOG2096|consen 193 IGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF 272 (420)
T ss_pred EeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhh
Confidence 33444444 789999999999999999998886532 233467899999999999888999995 242 356
Q ss_pred cccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 493 GWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 493 ~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
.|+||.+.|.++++ +.+.++|.|.||++|+||...
T Consensus 273 ~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 273 SLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred eeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 78999999999987 566899999999999999654
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=163.37 Aligned_cols=249 Identities=17% Similarity=0.179 Sum_probs=171.6
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCC--CCCcceeEEeccccccEEEEEEecC--CCEEEeeCCCcEE
Q 003217 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDS--DDGFGEVLSWQAHRGPVLSLCISSY--GDLWSGSEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g~~~~--~~~~~~~~~l~gH~~~V~slafs~d--G~L~SgS~DgtIr 265 (838)
.+.|..+..=|+. .+|||++..+.|-|||...-.... ...+..-..|.||++.=++|++++. |.|+|||.|++|+
T Consensus 124 ~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~ 203 (422)
T KOG0264|consen 124 DGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTIC 203 (422)
T ss_pred CccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEE
Confidence 5667777666755 688889999999999987642100 0134455688999987788999985 5599999999999
Q ss_pred EEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC-CCEEEEeC-CCcEEEEeccCcc
Q 003217 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRE 343 (838)
Q Consensus 266 vWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~V~s~s-~~tI~lWD~~tg~ 343 (838)
+||+...... ..... ......+| ...|..++...- ...+.+++ ++.+.|||+++++
T Consensus 204 lwdi~~~~~~------~~~~~------p~~~~~~h----------~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~ 261 (422)
T KOG0264|consen 204 LWDINAESKE------DKVVD------PKTIFSGH----------EDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT 261 (422)
T ss_pred EEeccccccC------Ccccc------ceEEeecC----------CcceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence 9999653221 00000 00011122 222333333322 23444555 4678899998631
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceE
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (838)
. + . + . ....|...+.
T Consensus 262 ~-~---~--~------------------------~-----------------------------------~~~ah~~~vn 276 (422)
T KOG0264|consen 262 S-K---P--S------------------------H-----------------------------------SVKAHSAEVN 276 (422)
T ss_pred C-C---C--c------------------------c-----------------------------------cccccCCcee
Confidence 0 0 0 0 0 0113455667
Q ss_pred EEEEcCCC-c-EEEEECCCeEEEEcC-C-CCeeeEeecCCccEEEEEEc---CCEEEEEeeCCeEEEEeCC--Cc-----
Q 003217 424 ALTTSIDG-M-IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE--GN----- 489 (838)
Q Consensus 424 ala~S~dg-~-l~Sgs~DgtIrlWD~-~-g~~l~tl~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~--g~----- 489 (838)
+++|+|-+ . ||+||.|++|+|||+ + .+++.+|.+|...|.+|.++ ...||+++.|+.+.|||+. |+
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 78887743 3 799999999999999 4 57999999999999999653 3589999999999999975 32
Q ss_pred --------ccccccccccCEEEEEeCCC---EEEEEcCCCCeeeeecC
Q 003217 490 --------LLGGWVAHSSPVIKMAVGAG---YIFTLANHGGIRGWNVT 526 (838)
Q Consensus 490 --------~i~~l~gH~~~V~sla~dg~---~l~S~S~DgtIrlWdl~ 526 (838)
++-.-.||+..|..+.+++. .|+|++.|+.+.||+..
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 34566799999999987654 68999999999999964
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.3e-15 Score=151.27 Aligned_cols=258 Identities=20% Similarity=0.275 Sum_probs=172.2
Q ss_pred EEEEeCCCcEEEEECCCCc--cCC--CCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCC
Q 003217 206 VWSGHRDGRIMCWKMNARL--LDS--DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 206 LaSGs~DGtIrvWd~~~g~--~~~--~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
|+.|++...|--+++.-.. +.. ...+.+...+.+|.++|++||.+ |. ++|||.|-||+|+|+........+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll- 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL- 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee-
Confidence 4556666655544443221 000 01234456778999999999986 44 7899999999999996533211111
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC--EEEEeC-CCcEEEEeccCccEEEEEecCCceEEe
Q 003217 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA--KVWSAG-FLSFALWDARTRELLKVFNIDGQIENR 357 (838)
Q Consensus 281 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~--~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~ 357 (838)
.+.+.++++.+.++-. .+.+|+ |+.|.+|++..=++++++.+|..-++.
T Consensus 81 ----------------------------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~ 132 (362)
T KOG0294|consen 81 ----------------------------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTD 132 (362)
T ss_pred ----------------------------ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccce
Confidence 1234566666655442 455555 578999999988888888877543332
Q ss_pred eecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec----cCcccc-CCCceEEEEEcCCCc
Q 003217 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA----KGGFGD-DNRRTEALTTSIDGM 432 (838)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~----~g~~~~-~~~~v~ala~S~dg~ 432 (838)
+ ...|.++.++.-..|++.|.|. ++.+.- -......|.|+|.|-
T Consensus 133 l-------------------------------siHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd 181 (362)
T KOG0294|consen 133 L-------------------------------SIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGD 181 (362)
T ss_pred e-------------------------------EecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCC
Confidence 2 2333344445445566666654 122221 122233477888886
Q ss_pred -EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE-cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--
Q 003217 433 -IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV-- 506 (838)
Q Consensus 433 -l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~-- 506 (838)
.+.++.++ |-+|.+ +......+.- ...+.|+.+ ++..|++|..|+.|++||.. +.+...+.+|...|.+|.+
T Consensus 182 ~F~v~~~~~-i~i~q~d~A~v~~~i~~-~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~ 259 (362)
T KOG0294|consen 182 HFVVSGRNK-IDIYQLDNASVFREIEN-PKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYT 259 (362)
T ss_pred EEEEEeccE-EEEEecccHhHhhhhhc-cccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEe
Confidence 66666665 999998 4444444432 245667755 68899999999999999988 7889999999999999973
Q ss_pred --CCCEEEEEcCCCCeeeeecCC
Q 003217 507 --GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 507 --dg~~l~S~S~DgtIrlWdl~s 527 (838)
++.+|+|+|.||.|++||+..
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred cCCceEEEEeccCceEEEEEccc
Confidence 567999999999999999753
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-15 Score=173.50 Aligned_cols=213 Identities=20% Similarity=0.348 Sum_probs=142.0
Q ss_pred EEec-cccccEEEEEEecCCC-EEEeeCCCcEEEEECCCccee-ee---------------------cCC----------
Q 003217 235 LSWQ-AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKA-LS---------------------LKP---------- 280 (838)
Q Consensus 235 ~~l~-gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~-~~---------------------~~~---------- 280 (838)
+.++ +|.++|++|.||+||+ ||||++|+.||||.+..-+.. .. ...
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 4456 8999999999999999 899999999999998541100 00 000
Q ss_pred -CceeeeE-------EEE-eeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEec
Q 003217 281 -EERHTAA-------LIV-ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI 350 (838)
Q Consensus 281 -~~~~~~~-------~~~-~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~ 350 (838)
....... +.+ +..+..+++ +..+|..+.-+. ...|.+++ |+|||||++.+.+||++|.+
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~G----------Ht~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~H 408 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKG----------HTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFSH 408 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhc----------cchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEec
Confidence 0000000 000 000111112 245666665553 45556665 89999999999999999853
Q ss_pred CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC-
Q 003217 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI- 429 (838)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~- 429 (838)
. .-|++|+|.|
T Consensus 409 n--------------------------------------------------------------------dfVTcVaFnPv 420 (712)
T KOG0283|consen 409 N--------------------------------------------------------------------DFVTCVAFNPV 420 (712)
T ss_pred C--------------------------------------------------------------------CeeEEEEeccc
Confidence 2 1244566655
Q ss_pred -CCcEEEEECCCeEEEEcCCCCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCCCc-cccccc---------c
Q 003217 430 -DGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLEGN-LLGGWV---------A 496 (838)
Q Consensus 430 -dg~l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~g~-~i~~l~---------g 496 (838)
|..++|||-|+.||||++..+.+-....-..-|+++ .+||+..++|+.+|..++|+..+. +...+. .
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~ 500 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ 500 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc
Confidence 445999999999999999655444443333678876 469999999999999999998863 322221 2
Q ss_pred cccCEEEEEe---CCCEEEEEcCCCCeeeeecCC
Q 003217 497 HSSPVIKMAV---GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 497 H~~~V~sla~---dg~~l~S~S~DgtIrlWdl~s 527 (838)
|. .|+++.+ +...++-.+.|..|||+|...
T Consensus 501 ~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 501 GK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD 533 (712)
T ss_pred Cc-eeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence 22 7999975 445677789999999999744
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-14 Score=159.04 Aligned_cols=235 Identities=18% Similarity=0.251 Sum_probs=168.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc-cccEEEEEEecCCCEEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH-~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (838)
.++|.|||++.+.+.||.+=.||.|.+|++..+ .-+...+.|| .+.|-+++|++.|+|.|.+.+|.|.-||+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-------w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-------WFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCC-------ceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEec
Confidence 458999999999999999999999999999875 2345566777 47899999999899999999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l 348 (838)
.+++.......- .+.+-.++..+.+..+..+.+ +.+...+..++...
T Consensus 98 ~~lk~~~~~d~~-----------------------------gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~--- 145 (691)
T KOG2048|consen 98 HTLKQKYNIDSN-----------------------------GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT--- 145 (691)
T ss_pred ccCceeEEecCC-----------------------------CcceeEEEeCCccceEEeecCCceEEEEecCCceEE---
Confidence 876544332110 112233344444444444332 22222332222210
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
+. -.|-....++.+|.+.
T Consensus 146 ------------------------------------------~~--------------------r~l~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 146 ------------------------------------------YK--------------------RSLMRQKSRVLSLSWN 163 (691)
T ss_pred ------------------------------------------EE--------------------eecccccceEEEEEec
Confidence 00 0022234567789999
Q ss_pred CCCc-EEEEECCCeEEEEcC-CCCeee--Ee---ec---CCccEEEEEE-cCCEEEEEeeCCeEEEEeCC-Ccccccccc
Q 003217 429 IDGM-IWTGGANGLLLQWDP-NGNRLQ--DF---QY---LPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (838)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~--tl---~~---H~~~V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~g 496 (838)
+++. |++||.||.|++||+ ++..++ ++ .. ..--|++|.+ ....|++|.+-|+|+.||.. |.++++...
T Consensus 164 ~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~ 243 (691)
T KOG2048|consen 164 PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSC 243 (691)
T ss_pred CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhh
Confidence 9998 999999999999999 676554 22 11 1223566654 45699999999999999987 899999999
Q ss_pred cccCEEEEEe--CCCEEEEEcCCCCeeeeecC
Q 003217 497 HSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 497 H~~~V~sla~--dg~~l~S~S~DgtIrlWdl~ 526 (838)
|...|.+|+. +++++++++.|+.|-.+...
T Consensus 244 h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 244 HDADVLALAVADNEDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred hhcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence 9999999985 56799999999998777644
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8e-16 Score=174.04 Aligned_cols=225 Identities=18% Similarity=0.226 Sum_probs=161.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC-C-EEEeeCCCcEEEEECCCcceeeecC
Q 003217 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEAIEKALSLK 279 (838)
Q Consensus 202 dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvWd~~~~~~~~~~~ 279 (838)
+.++|||++..|.|-+||+.... +-+.+..|..|+..|+++.|++-- . |+|||.||+||+||+.......++
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~-----rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~- 172 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSI-----RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF- 172 (839)
T ss_pred hhhhheeecCCCcEEEEecCccc-----cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc-
Confidence 35799999999999999998721 114556789999999999999854 3 789999999999999653321111
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC-CCEEEEeCC-CcEEEEeccCccEEEEEecCCceEEe
Q 003217 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENR 357 (838)
Q Consensus 280 ~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~ 357 (838)
++ .+..++.+.+++. +.+.+++.+ +.+++||++.-.. .
T Consensus 173 ------------------~~----------nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r---------~--- 212 (839)
T KOG0269|consen 173 ------------------RS----------NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR---------C--- 212 (839)
T ss_pred ------------------cc----------cchhhhceeeccCCCceEEEecCCceEEEeeccCchh---------H---
Confidence 11 1344666666554 446666665 5788999964211 0
Q ss_pred eecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEE
Q 003217 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG 436 (838)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sg 436 (838)
. -.+..|.+.|.++.++|++. |++|
T Consensus 213 -------------------------~-----------------------------~k~~AH~GpV~c~nwhPnr~~lATG 238 (839)
T KOG0269|consen 213 -------------------------E-----------------------------KKLTAHNGPVLCLNWHPNREWLATG 238 (839)
T ss_pred -------------------------H-----------------------------HHhhcccCceEEEeecCCCceeeec
Confidence 0 01445777788899999876 8999
Q ss_pred ECCCeEEEEcCCC-C--eeeEeecCCccEEEEEEc--C-CEEEEEee--CCeEEEEeCCCc--ccccccccccCEEEEEe
Q 003217 437 GANGLLLQWDPNG-N--RLQDFQYLPFAVQCLCTF--G-SQIWVGYM--NGIVQVLDLEGN--LLGGWVAHSSPVIKMAV 506 (838)
Q Consensus 437 s~DgtIrlWD~~g-~--~l~tl~~H~~~V~sls~d--G-~~LasGs~--DgtIrlWD~~g~--~i~~l~gH~~~V~sla~ 506 (838)
+.|++|||||.++ + .+.++. -..+|.+|.+- - .+|++++. |-.|+|||+... +-+++..|++.|+.+++
T Consensus 239 GRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W 317 (839)
T KOG0269|consen 239 GRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAW 317 (839)
T ss_pred CCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceec
Confidence 9999999999964 2 233332 13567777653 2 37888774 889999999865 46899999999999997
Q ss_pred CC---CEEEEEcCCCCeeeeecCC
Q 003217 507 GA---GYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 507 dg---~~l~S~S~DgtIrlWdl~s 527 (838)
++ ..++|+|.|++|..=.+++
T Consensus 318 ~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 318 DSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred cCCCceeeEeecCccHHHHhhhhc
Confidence 44 4688999999986544443
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-15 Score=148.49 Aligned_cols=243 Identities=14% Similarity=0.116 Sum_probs=154.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec--CCC-EEEeeCCCcEEEEEC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--dG~-L~SgS~DgtIrvWd~ 269 (838)
.|..+..|=-|++|||+++|++||++...... ..+.+.+|.||++||+.++|-. .|. |+|+|.||.|-||.-
T Consensus 13 ~IHda~lDyygkrlATcsSD~tVkIf~v~~n~-----~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 13 MIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG-----QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhHhhhhhhcceeeeecCCccEEEEEEcCCC-----CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 34445555568999999999999999987742 2356788999999999999986 687 789999999999997
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC--CCCEEEEeC-CCcEEEEeccCc-cEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSFALWDARTR-ELL 345 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~--~~~~V~s~s-~~tI~lWD~~tg-~~l 345 (838)
+++.-... .... .| ...+.+++..+ .+-.+++++ |+.|.|.+.++. .-.
T Consensus 88 ~~g~w~k~-~e~~----------------~h----------~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~ 140 (299)
T KOG1332|consen 88 ENGRWTKA-YEHA----------------AH----------SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWT 140 (299)
T ss_pred CCCchhhh-hhhh----------------hh----------cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCcc
Confidence 65421100 0000 01 22333344333 223445544 567777665432 100
Q ss_pred --EEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEe-c----cCccccC
Q 003217 346 --KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA-A----KGGFGDD 418 (838)
Q Consensus 346 --~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~-~----~g~~~~~ 418 (838)
+... .|.-|+..+. . .|.+.++
T Consensus 141 t~ki~~---------------------------------------------------aH~~GvnsVswapa~~~g~~~~~ 169 (299)
T KOG1332|consen 141 TSKIVF---------------------------------------------------AHEIGVNSVSWAPASAPGSLVDQ 169 (299)
T ss_pred chhhhh---------------------------------------------------ccccccceeeecCcCCCcccccc
Confidence 0000 1111111110 0 0111111
Q ss_pred CCceEEEEEcCCCcEEEEECCCeEEEEcC-CC--CeeeEeecCCccEEEEEE--c-C---CEEEEEeeCCeEEEEeCC--
Q 003217 419 NRRTEALTTSIDGMIWTGGANGLLLQWDP-NG--NRLQDFQYLPFAVQCLCT--F-G---SQIWVGYMNGIVQVLDLE-- 487 (838)
Q Consensus 419 ~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g--~~l~tl~~H~~~V~sls~--d-G---~~LasGs~DgtIrlWD~~-- 487 (838)
.. ..+-.+++||+.|++|+||+. ++ +.-++|.+|+++|..++. . | .+||+++.||++.||-..
T Consensus 170 ~~------~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 170 GP------AAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred Cc------ccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence 00 011235899999999999999 44 445669999999998853 2 2 399999999999999754
Q ss_pred Cc--ccccccccccCEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 488 GN--LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 488 g~--~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
+. ....+.--.+.|+.+.+ .|..|+-++.|+.|.+|.
T Consensus 244 ~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 244 YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 22 12233334678999875 788888888999999998
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-14 Score=146.09 Aligned_cols=174 Identities=20% Similarity=0.245 Sum_probs=125.4
Q ss_pred cCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003217 141 TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (838)
Q Consensus 141 ~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd 219 (838)
+++.|++ +-|.++.||=..++...+. +.+| +++|+|+.+|-+.+.|.||+.|.++|+||
T Consensus 21 eGDLlFscaKD~~~~vw~s~nGerlGt-------------------y~GH-tGavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 21 EGDLLFSCAKDSTPTVWYSLNGERLGT-------------------YDGH-TGAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred CCcEEEEecCCCCceEEEecCCceeee-------------------ecCC-CceEEEEEecCCcceeeeccccceeEEEE
Confidence 4668887 5599999997655444332 3345 89999999999999999999999999999
Q ss_pred CCCCcc------------------------------------------CCC---CCcceeEEeccccccEEEEEEecCCC
Q 003217 220 MNARLL------------------------------------------DSD---DGFGEVLSWQAHRGPVLSLCISSYGD 254 (838)
Q Consensus 220 ~~~g~~------------------------------------------~~~---~~~~~~~~l~gH~~~V~slafs~dG~ 254 (838)
+++|.+ +.. ..-++.+.+.-|...++++.++|-++
T Consensus 81 v~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 81 VETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred cCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 999963 000 01122445556778899999999988
Q ss_pred -EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CC
Q 003217 255 -LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FL 332 (838)
Q Consensus 255 -L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~ 332 (838)
|++|-+||.|..||+.++...+.-.. -| +..+..+..+++.....+++ |.
T Consensus 161 ~ii~Ghe~G~is~~da~~g~~~v~s~~------------------~h----------~~~Ind~q~s~d~T~FiT~s~Dt 212 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGKELVDSDE------------------EH----------SSKINDLQFSRDRTYFITGSKDT 212 (327)
T ss_pred EEEEecCCCcEEEEEcccCceeeechh------------------hh----------ccccccccccCCcceEEecccCc
Confidence 89999999999999987644322110 01 33456666777777777776 67
Q ss_pred cEEEEeccCccEEEEEecCCceEEeeecccC
Q 003217 333 SFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (838)
Q Consensus 333 tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~ 363 (838)
+-++||..+-++++++.-... ++..++++.
T Consensus 213 takl~D~~tl~v~Kty~te~P-vN~aaisP~ 242 (327)
T KOG0643|consen 213 TAKLVDVRTLEVLKTYTTERP-VNTAAISPL 242 (327)
T ss_pred cceeeeccceeeEEEeeeccc-ccceecccc
Confidence 899999999999999865432 244455543
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-14 Score=145.89 Aligned_cols=242 Identities=17% Similarity=0.142 Sum_probs=159.7
Q ss_pred EEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCC
Q 003217 235 LSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSD 313 (838)
Q Consensus 235 ~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~ 313 (838)
+.+++|.+.|.+|+|..+|. |++||.|++++||+++......... .++| +..
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~-----------------~~gh----------~~s 66 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELV-----------------YRGH----------TDS 66 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhc-----------------ccCC----------Ccc
Confidence 45789999999999999997 9999999999999997642221111 1122 223
Q ss_pred eEEEEEcCC-CCEEEEe-CCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeE
Q 003217 314 IKNLLSDHS-RAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (838)
Q Consensus 314 v~~las~~~-~~~V~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~ 391 (838)
|..++.++. ...++++ ++++|++||.++++++....-.+...+ +..
T Consensus 67 vdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~--------------------------------i~w 114 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENIN--------------------------------ITW 114 (313)
T ss_pred hhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceE--------------------------------EEE
Confidence 334444332 2344444 468999999999999776543322110 112
Q ss_pred eecCcceeeecC-CcEEEEeccC--cc--ccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEE
Q 003217 392 FQRSRNAIMGAA-DAVRRVAAKG--GF--GDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQC 464 (838)
Q Consensus 392 ~~~~~~~~~g~~-~~v~~v~~~g--~~--~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~s 464 (838)
+|.+.+.+.+.. +.+.-+.... .. .+....+.-+.+..++. .......|+|.|-.- .-+.+++++.|+..-.|
T Consensus 115 sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCic 194 (313)
T KOG1407|consen 115 SPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCIC 194 (313)
T ss_pred cCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEE
Confidence 222222222222 1221111100 00 01112233455554444 344445789999887 77999999999977777
Q ss_pred EEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCCCchhh
Q 003217 465 LCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDSIL 535 (838)
Q Consensus 465 ls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~~d~~~ 535 (838)
|.+ +|+++|+|+.|..+-|||++ =-|.+.+.-|.-+|..|.+ ||++|+|||.|..|-|=++.++..+..+.
T Consensus 195 I~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 195 IEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred EEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee
Confidence 755 69999999999999999997 4578999999999999985 89999999999999877777766665554
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.4e-15 Score=163.25 Aligned_cols=225 Identities=14% Similarity=0.099 Sum_probs=151.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC---C-EEEeeCCCcEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG---D-LWSGSEGGGIKI 266 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG---~-L~SgS~DgtIrv 266 (838)
...+.|++++|+|+.||+|..-|.+||+++..- ++.....+|...|.|+.||..- + |+|||.|..|.|
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l--------~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV 530 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL--------EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHV 530 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhh--------hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEE
Confidence 567999999999999999999999999999874 5666789999999999999642 3 689999999999
Q ss_pred EECCCcce-eeecCCCceeeeEEEEeec-------------eeecccce-eccce------eeeecCCeEEEEEcCCCCE
Q 003217 267 WPWEAIEK-ALSLKPEERHTAALIVERS-------------YIDLRSHL-SVNGF------SSILTSDIKNLLSDHSRAK 325 (838)
Q Consensus 267 Wd~~~~~~-~~~~~~~~~~~~~~~~~~s-------------~~~l~~~~-~~~~~------~~~~s~~v~~las~~~~~~ 325 (838)
+|+...-. ..++..+...+.++-+..+ .+.++... ...+. ..+....+..++.++.-..
T Consensus 531 ~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~ 610 (1080)
T KOG1408|consen 531 YDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL 610 (1080)
T ss_pred EecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcce
Confidence 99854111 1112222222222211111 11111110 00011 1111233445566665555
Q ss_pred EEEe-CCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCC
Q 003217 326 VWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD 404 (838)
Q Consensus 326 V~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~ 404 (838)
++++ .|+.|+|+|+.+|+..++|.+...
T Consensus 611 v~t~cQDrnirif~i~sgKq~k~FKgs~~--------------------------------------------------- 639 (1080)
T KOG1408|consen 611 VVTVCQDRNIRIFDIESGKQVKSFKGSRD--------------------------------------------------- 639 (1080)
T ss_pred EEEEecccceEEEeccccceeeeeccccc---------------------------------------------------
Confidence 5444 467788888888877777754211
Q ss_pred cEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCe
Q 003217 405 AVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGI 480 (838)
Q Consensus 405 ~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~Dgt 480 (838)
|.+...-|..+|.|. |++.+.|+++.++|. +|+|+.++.||...|+.+.+ |-++|++.+.||.
T Consensus 640 -------------~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC 706 (1080)
T KOG1408|consen 640 -------------HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC 706 (1080)
T ss_pred -------------CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCce
Confidence 001111233456565 888889999999999 89999999999999999876 5679999999999
Q ss_pred EEEEeCC
Q 003217 481 VQVLDLE 487 (838)
Q Consensus 481 IrlWD~~ 487 (838)
|.||.+.
T Consensus 707 IFvW~lp 713 (1080)
T KOG1408|consen 707 IFVWKLP 713 (1080)
T ss_pred EEEEECc
Confidence 9999964
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.2e-14 Score=143.84 Aligned_cols=251 Identities=14% Similarity=0.190 Sum_probs=169.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCC
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~ 271 (838)
..|..|.|+|.+..|..++.||++|+++.... .... .--|..|+.+++|.++.++++|+-||.||+.|+.+
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--------~l~~-~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--------SLKL-KFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccch--------hhhh-heecCCceeeeeccCCceEEEeccCceEEEEEecC
Confidence 36889999999999999999999999999874 2222 23588999999999988999999999999999987
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEec
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNI 350 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~ 350 (838)
+....... | ...++++......+.|.+|+| ++|++||.+...+..++..
T Consensus 85 ~~~~~igt--------------------h----------~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~ 134 (323)
T KOG1036|consen 85 GNEDQIGT--------------------H----------DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ 134 (323)
T ss_pred Ccceeecc--------------------C----------CCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc
Confidence 54322111 1 334677777666778889996 6899999987544433322
Q ss_pred CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc----Ccccc----CCCce
Q 003217 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK----GGFGD----DNRRT 422 (838)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~----g~~~~----~~~~v 422 (838)
...+ ...+ -.+..+++|..+....++.. ..++. -...+
T Consensus 135 ~kkV-y~~~---------------------------------v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqt 180 (323)
T KOG1036|consen 135 GKKV-YCMD---------------------------------VSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQT 180 (323)
T ss_pred CceE-EEEe---------------------------------ccCCEEEEeecCceEEEEEcccccchhhhccccceeEE
Confidence 1111 1100 01223345555443333331 11211 12346
Q ss_pred EEEEEcCCCc-EEEEECCCeEEEEcCC-C----CeeeEeecCC---------ccEEEEEEcC--CEEEEEeeCCeEEEEe
Q 003217 423 EALTTSIDGM-IWTGGANGLLLQWDPN-G----NRLQDFQYLP---------FAVQCLCTFG--SQIWVGYMNGIVQVLD 485 (838)
Q Consensus 423 ~ala~S~dg~-l~Sgs~DgtIrlWD~~-g----~~l~tl~~H~---------~~V~sls~dG--~~LasGs~DgtIrlWD 485 (838)
++|+.-|++. .+.+|-||-|-+=..+ . +.-..|+.|. .+|+++++.. ..+|+|+.||.|-+||
T Consensus 181 R~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 181 RCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred EEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence 6777667555 6777889977665542 2 3445677764 3678888764 4899999999999999
Q ss_pred CC-CcccccccccccCEEEEEe--CCCEEEEEc
Q 003217 486 LE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLA 515 (838)
Q Consensus 486 ~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S 515 (838)
+. .+.+..+..-...|.++++ ||..||.++
T Consensus 261 ~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 261 LFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred CcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 87 4566777666677888875 788888765
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=156.37 Aligned_cols=228 Identities=16% Similarity=0.147 Sum_probs=153.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEE------------------eccccccEEEEEEecCCC--EEEeeCC
Q 003217 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS------------------WQAHRGPVLSLCISSYGD--LWSGSEG 261 (838)
Q Consensus 202 dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~------------------l~gH~~~V~slafs~dG~--L~SgS~D 261 (838)
.|.++|.|+.|-.|.|||+.-.. ...+..+ -+||+.+|.+|++..+-+ |+|||.|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d-----~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD 265 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVD-----AVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD 265 (463)
T ss_pred CcceEEEeccCceeEEecccccc-----ccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC
Confidence 46799999999999999986431 0111111 247999999999988765 8999999
Q ss_pred CcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeC-CCcEEEEec
Q 003217 262 GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDA 339 (838)
Q Consensus 262 gtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~~tI~lWD~ 339 (838)
.||++||++++++..++..+ ..+|.++...+... .+.+|+ +++++|.|.
T Consensus 266 ~TV~lWD~~~g~p~~s~~~~-----------------------------~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSITHH-----------------------------GKKVQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred ceEEEEEcCCCCcceehhhc-----------------------------CCceeEEEecCCCceEEEeccccceEEeeec
Confidence 99999999987765544321 34556666655433 455666 578999998
Q ss_pred cCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCC
Q 003217 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (838)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (838)
+.-.. .... |+- .
T Consensus 317 R~~~~-------s~~~---------------------wk~---------------------------------------~ 329 (463)
T KOG0270|consen 317 RDPSN-------SGKE---------------------WKF---------------------------------------D 329 (463)
T ss_pred cCccc-------cCce---------------------EEe---------------------------------------c
Confidence 74110 0000 000 0
Q ss_pred CceEEEEEcCCC--cEEEEECCCeEEEEcC--CCCeeeEeecCCccEEEEEEcC---CEEEEEeeCCeEEEEeCCCcccc
Q 003217 420 RRTEALTTSIDG--MIWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQCLCTFG---SQIWVGYMNGIVQVLDLEGNLLG 492 (838)
Q Consensus 420 ~~v~ala~S~dg--~l~Sgs~DgtIrlWD~--~g~~l~tl~~H~~~V~sls~dG---~~LasGs~DgtIrlWD~~g~~i~ 492 (838)
..|+.+++.+.. .+++++.||+|+=.|+ .|+++-+++.|...|.+|+..+ ..+++++.|++|+||++.+..-.
T Consensus 330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 112223333322 3567788999999999 3799999999999999998764 48999999999999998743323
Q ss_pred ccccccc---CEEEEEeCC---CEEEEEcCCCCeeeeecCCCCC
Q 003217 493 GWVAHSS---PVIKMAVGA---GYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 493 ~l~gH~~---~V~sla~dg---~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
.-..|.- ...|.+.++ ..++.|+..+.+|+||+.+..+
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 3333432 233444443 3577788888899999876543
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-16 Score=176.29 Aligned_cols=216 Identities=18% Similarity=0.264 Sum_probs=164.6
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCc
Q 003217 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (838)
Q Consensus 204 ~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~ 282 (838)
..+..+..+-..|+|+.. .+.+|...|.++..-..++ +++|++|-.+-||....--...++
T Consensus 5 ~~~m~~~~~t~Lr~~~~~--------------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~---- 66 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTR--------------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL---- 66 (825)
T ss_pred cccceeeeeeccccccch--------------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee----
Confidence 344555556667778653 2457899999998866666 689999999999987321111111
Q ss_pred eeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecc
Q 003217 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMS 361 (838)
Q Consensus 283 ~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s 361 (838)
.+| ...+.++.++.....|+.|+ +++|++||+..++.+++|.+|-.
T Consensus 67 ---------------~~h----------espIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~-------- 113 (825)
T KOG0267|consen 67 ---------------TGH----------ESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLL-------- 113 (825)
T ss_pred ---------------ecc----------CCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhcccc--------
Confidence 122 55678888888787887776 67999999998877666654321
Q ss_pred cCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCC
Q 003217 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANG 440 (838)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~Dg 440 (838)
.+..|.|.|-+. .++|+.|.
T Consensus 114 -----------------------------------------------------------~~~sv~f~P~~~~~a~gStdt 134 (825)
T KOG0267|consen 114 -----------------------------------------------------------NITSVDFHPYGEFFASGSTDT 134 (825)
T ss_pred -----------------------------------------------------------CcceeeeccceEEeccccccc
Confidence 122344555444 57899999
Q ss_pred eEEEEcC-CCCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEeCCC--EEEEE
Q 003217 441 LLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAG--YIFTL 514 (838)
Q Consensus 441 tIrlWD~-~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~--~l~S~ 514 (838)
.+++||. .-.|.+++.+|...|.++ .++|+++++|+.|.+++|||+. |+++..|.+|.+.|.++.+++. .+++|
T Consensus 135 d~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~G 214 (825)
T KOG0267|consen 135 DLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPG 214 (825)
T ss_pred cceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccC
Confidence 9999999 478999999999888876 5689999999999999999986 9999999999999999987664 56799
Q ss_pred cCCCCeeeeecCCCC
Q 003217 515 ANHGGIRGWNVTSPG 529 (838)
Q Consensus 515 S~DgtIrlWdl~s~~ 529 (838)
|.|++||+||++++.
T Consensus 215 s~d~tv~f~dletfe 229 (825)
T KOG0267|consen 215 SSDRTVRFWDLETFE 229 (825)
T ss_pred CCCceeeeeccceeE
Confidence 999999999987543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-14 Score=157.58 Aligned_cols=287 Identities=15% Similarity=0.141 Sum_probs=180.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd 268 (838)
++-|.|+..+|.|.+|+||+.||++|+|.+.+| +++.+++- .+.|.||+|+|.+. ++..+.+.++-|-+
T Consensus 400 tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--------Rcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 400 TGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--------RCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred CCeEEEEEecCCcceeeecCCCCcEEEEEeecc--------eEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 889999999999999999999999999999998 66666542 34899999999987 45555555565555
Q ss_pred CCCcceeee---------cCCCceeeeEEEEeeceeecccc---eeccceeee--ecCCeEEEEEcCCCCEEEEeCC---
Q 003217 269 WEAIEKALS---------LKPEERHTAALIVERSYIDLRSH---LSVNGFSSI--LTSDIKNLLSDHSRAKVWSAGF--- 331 (838)
Q Consensus 269 ~~~~~~~~~---------~~~~~~~~~~~~~~~s~~~l~~~---~~~~~~~~~--~s~~v~~las~~~~~~V~s~s~--- 331 (838)
..-+.+... ...+..... ..+.+... .-..++|.. ....++.+.-...|..+++..-
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~------~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDA------AVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcc------cceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 432211100 000000000 00011000 000111111 1122333333333333332211
Q ss_pred -CcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEe
Q 003217 332 -LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA 410 (838)
Q Consensus 332 -~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~ 410 (838)
..|.|.++..+....-| . +.......+.|.+.....++.++..++.++
T Consensus 545 ~~~VliHQLSK~~sQ~PF-----------------------------~--kskG~vq~v~FHPs~p~lfVaTq~~vRiYd 593 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPF-----------------------------R--KSKGLVQRVKFHPSKPYLFVATQRSVRIYD 593 (733)
T ss_pred cceEEEEecccccccCch-----------------------------h--hcCCceeEEEecCCCceEEEEeccceEEEe
Confidence 23333333322111001 0 011122245677777777888887777666
Q ss_pred c-cC----ccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC--CCCeeeEeecCCccEEEEEEcCC--EEEEEeeCCe
Q 003217 411 A-KG----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQCLCTFGS--QIWVGYMNGI 480 (838)
Q Consensus 411 ~-~g----~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~--~g~~l~tl~~H~~~V~sls~dG~--~LasGs~Dgt 480 (838)
. +. .+......+..++++|.|- |+.|+.|+.+..+|+ ..+..+++..|...|.+|++.++ .+++|+.||+
T Consensus 594 L~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt 673 (733)
T KOG0650|consen 594 LSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT 673 (733)
T ss_pred hhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc
Confidence 4 22 2223456788899999775 899999999998898 45789999999999999999887 8999999999
Q ss_pred EEEEe------CCCc----ccccccccccC----EEEEEeCCC--EEEEEcCCCCeeee
Q 003217 481 VQVLD------LEGN----LLGGWVAHSSP----VIKMAVGAG--YIFTLANHGGIRGW 523 (838)
Q Consensus 481 IrlWD------~~g~----~i~~l~gH~~~----V~sla~dg~--~l~S~S~DgtIrlW 523 (838)
+.|+- +-.+ .+..+.||... |....++++ +|+|++.||+||+|
T Consensus 674 v~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 674 VIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 99984 2111 47889999766 777778876 79999999999998
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.3e-15 Score=162.20 Aligned_cols=265 Identities=21% Similarity=0.273 Sum_probs=160.3
Q ss_pred ceeEEEEecCC--EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE
Q 003217 133 CFLRTIVCTEE--QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (838)
Q Consensus 133 ~~~~~l~~~~~--~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG 209 (838)
.++|.++.+.. .|+. +.|++|++|++++.... .-...++...|+. | .+||+|+++.+.++.++||
T Consensus 295 d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s---------~~~~~epi~tfra--H-~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS---------AEKDVEPILTFRA--H-EGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred hhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc---------cccceeeeEEEec--c-cCceEEEEecCCceEEEee
Confidence 46666666533 4544 67999999999552211 1122344444554 3 8899999999999999999
Q ss_pred eCCCcEEEEECCCCccCC---CCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceee
Q 003217 210 HRDGRIMCWKMNARLLDS---DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~---~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~ 285 (838)
+.||+||.|++... .++ ..+.....++.||++.|+.+++|+... |+++|.|||+|+|+...... .++.....+.
T Consensus 363 g~Dg~I~~w~~p~n-~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g 440 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPN-QDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHG 440 (577)
T ss_pred ccCceeeeeccCCC-CCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccC
Confidence 99999999987632 211 223344567899999999999998765 99999999999999854332 1111111111
Q ss_pred eEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC--CcEEEEeccCccEEEEEecCCceEEeeecccC
Q 003217 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (838)
Q Consensus 286 ~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~ 363 (838)
..++ +..-.....+..++. +---+.|..++.-+.+|....
T Consensus 441 ~Pls---------------------------vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~----------- 482 (577)
T KOG0642|consen 441 YPLS---------------------------VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSA----------- 482 (577)
T ss_pred Ccce---------------------------EeeccchhHhhhhhcccccccchhhhhhhheeeccccC-----------
Confidence 1111 111000000000000 001122333322222221000
Q ss_pred cccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC-CCcEEEEECCCeE
Q 003217 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI-DGMIWTGGANGLL 442 (838)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~-dg~l~Sgs~DgtI 442 (838)
.. +.++ ...+.-++..| .+..+++..|+.|
T Consensus 483 -----------------------------------~~----~~~~----------~~~in~vVs~~~~~~~~~~hed~~I 513 (577)
T KOG0642|consen 483 -----------------------------------SP----GPRR----------YPQINKVVSHPTADITFTAHEDRSI 513 (577)
T ss_pred -----------------------------------CC----cccc----------cCccceEEecCCCCeeEecccCCce
Confidence 00 0000 00011112222 2346788899999
Q ss_pred EEEcC-CCCeeeEeecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCC-Ccccccccccc
Q 003217 443 LQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (838)
Q Consensus 443 rlWD~-~g~~l~tl~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~-g~~i~~l~gH~ 498 (838)
++.|. +|+.+..+..|...|++++.+ |.+|++|+.|+.|++|.+. -.++....+|.
T Consensus 514 r~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 514 RFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred ecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 99999 799999999999999998764 7799999999999999986 34566666664
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=151.78 Aligned_cols=112 Identities=18% Similarity=0.299 Sum_probs=96.4
Q ss_pred cccCCCceEEEEEcCC--CcEEEEECCCeEEEEcC-CC---CeeeEeecCCccEEEEEEcCC--EEEEEeeCCeEEEEeC
Q 003217 415 FGDDNRRTEALTTSID--GMIWTGGANGLLLQWDP-NG---NRLQDFQYLPFAVQCLCTFGS--QIWVGYMNGIVQVLDL 486 (838)
Q Consensus 415 ~~~~~~~v~ala~S~d--g~l~Sgs~DgtIrlWD~-~g---~~l~tl~~H~~~V~sls~dG~--~LasGs~DgtIrlWD~ 486 (838)
|.+|...|+.|.+||. +.++|||.||+|||||+ .+ .|+-+ +.|...|+.|+++++ +||+|+.||+++|||+
T Consensus 253 f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDL 331 (440)
T KOG0302|consen 253 FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDL 331 (440)
T ss_pred ccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEh
Confidence 5567788888998874 56899999999999999 56 45555 789999999998754 8999999999999997
Q ss_pred C----CcccccccccccCEEEEEeC---CCEEEEEcCCCCeeeeecCC
Q 003217 487 E----GNLLGGWVAHSSPVIKMAVG---AGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 487 ~----g~~i~~l~gH~~~V~sla~d---g~~l~S~S~DgtIrlWdl~s 527 (838)
. +++++.++-|..+|++|.+. .+.++.+|.|..|.+||+..
T Consensus 332 R~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 332 RQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred hhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 5 57899999999999999975 56788899999999999865
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-13 Score=153.70 Aligned_cols=111 Identities=15% Similarity=0.205 Sum_probs=91.6
Q ss_pred cCCCceEEEEEcCCCc-EEEEECCC-----eEEEEcC-CCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC
Q 003217 417 DDNRRTEALTTSIDGM-IWTGGANG-----LLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 417 ~~~~~v~ala~S~dg~-l~Sgs~Dg-----tIrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (838)
+|...|.+++.+|+|. ++|++... .|+||+. +=...+.+.+|+-.|+-++ +||++|++.+.|+++.||...
T Consensus 523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~ 602 (764)
T KOG1063|consen 523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQ 602 (764)
T ss_pred cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeee
Confidence 4777899999999998 56766542 5999999 4466778999999999885 589999999999999999864
Q ss_pred -Cc----ccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 488 -GN----LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 488 -g~----~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
+. -....+.|+-.||+-. +++.+++|+|.|++|++|....
T Consensus 603 ~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 603 EDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred cccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence 21 2445789999999876 5788999999999999999643
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-13 Score=138.09 Aligned_cols=245 Identities=14% Similarity=0.201 Sum_probs=171.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc-CCCCC-cceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEEC
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL-DSDDG-FGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~-~~~~~-~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (838)
..|++-+++|-+++|+.|+.+|+|-+..+..-.- ....+ -..+...++|.++|+.|+|. |..|+||+. |.|+-|.+
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-hhheeeccC-ceEEEeee
Confidence 3567778899999999999999999998754210 00011 12345569999999999998 445788875 99999998
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC-CCEEEEeCCCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAGFLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~V~s~s~~tI~lWD~~tg~~l~~l 348 (838)
...++.....+ ++.+. ..-.+..++-+++..+..++. +..+.+++|..+.-||+++|+..++|
T Consensus 89 ~E~~es~~~K~-------------lwe~~---~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 89 NEEEESLATKR-------------LWEVK---IPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred hhhhhhccchh-------------hhhhc---CccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE
Confidence 65332111100 00000 000111234567888888754 45666777889999999999998888
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE-
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT- 427 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~- 427 (838)
.+|.... .+++-
T Consensus 153 rGHtDYv-------------------------------------------------------------------H~vv~R 165 (325)
T KOG0649|consen 153 RGHTDYV-------------------------------------------------------------------HSVVGR 165 (325)
T ss_pred cCCccee-------------------------------------------------------------------eeeeec
Confidence 7776432 11221
Q ss_pred cCCCcEEEEECCCeEEEEcC-CCCeeeEeec---------C-CccEEEEEEcCCEEEEEeeCCeEEEEeCC-Cc--cccc
Q 003217 428 SIDGMIWTGGANGLLLQWDP-NGNRLQDFQY---------L-PFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GN--LLGG 493 (838)
Q Consensus 428 S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~---------H-~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~--~i~~ 493 (838)
+..++++||++||++|+||. ++++++++.. | ..+|.+++.+..+++.|+ ...+.||.+. .+ ++-.
T Consensus 166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEe
Confidence 34678999999999999999 7899988763 2 346889999999998875 6679999986 34 4445
Q ss_pred ccccccCEEEEEeCCCEEEEEcCCCCeeeeec
Q 003217 494 WVAHSSPVIKMAVGAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 494 l~gH~~~V~sla~dg~~l~S~S~DgtIrlWdl 525 (838)
+.+| |.-+.++.+.+++++..+.|.-|.+
T Consensus 245 ipa~---v~~v~F~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 245 IPAR---VHLVDFVDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred cccc---eeEeeeecceEEEeccccceeeeee
Confidence 5555 6667788889999998888888875
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.2e-13 Score=141.84 Aligned_cols=244 Identities=11% Similarity=0.056 Sum_probs=152.9
Q ss_pred cCCEEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE-eCCCcEEE
Q 003217 141 TEEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG-HRDGRIMC 217 (838)
Q Consensus 141 ~~~~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG-s~DGtIrv 217 (838)
++..+++ +.++.|++||..+...... +.....+.+++++|+++.++.+ +.|+.|++
T Consensus 41 dg~~l~~~~~~~~~v~~~d~~~~~~~~~---------------------~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 41 DGKLLYVCASDSDTIQVIDLATGEVIGT---------------------LPSGPDPELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred CCCEEEEEECCCCeEEEEECCCCcEEEe---------------------ccCCCCccEEEECCCCCEEEEEcCCCCeEEE
Confidence 4556665 3478999999876432210 0001234578899999977655 56899999
Q ss_pred EECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCC-cEEEEECCCcceeeecCCCceeeeEEEEeecee
Q 003217 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG-GIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dg-tIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 295 (838)
||+.++ +.+..+.. ...+.+++|+|+|+ +++++.++ .+.+||..+.+.......
T Consensus 100 ~d~~~~--------~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~--------------- 155 (300)
T TIGR03866 100 IDIETR--------KVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV--------------- 155 (300)
T ss_pred EECCCC--------eEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc---------------
Confidence 999875 44444442 23468899999998 56777664 577788865332111000
Q ss_pred ecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeecccCccccccccee
Q 003217 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (838)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (838)
......+++++++..++.++ ++.|++||+.++++++.+..+...
T Consensus 156 ---------------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~------------------- 201 (300)
T TIGR03866 156 ---------------DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPG------------------- 201 (300)
T ss_pred ---------------CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccc-------------------
Confidence 11223456667777775443 578999999998876654321000
Q ss_pred eEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcE-E-EEECCCeEEEEcC-CCC
Q 003217 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMI-W-TGGANGLLLQWDP-NGN 450 (838)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l-~-Sgs~DgtIrlWD~-~g~ 450 (838)
.. ........++++|+|.. + +.+.++.|.+||+ +++
T Consensus 202 ------~~-----------------------------------~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 202 ------VH-----------------------------------PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE 240 (300)
T ss_pred ------cc-----------------------------------cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 00 00001123567888873 3 3445678999999 677
Q ss_pred eeeEeecCCccEEEEE--EcCCEEEEEe-eCCeEEEEeCC-CcccccccccccCEEEEEe
Q 003217 451 RLQDFQYLPFAVQCLC--TFGSQIWVGY-MNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV 506 (838)
Q Consensus 451 ~l~tl~~H~~~V~sls--~dG~~LasGs-~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~ 506 (838)
.+..+. +...+.+++ ++|++|+++. .++.|++||++ ++++..+..+ ...++|++
T Consensus 241 ~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~ 298 (300)
T TIGR03866 241 VLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVV 298 (300)
T ss_pred EEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEe
Confidence 766553 344677765 4789998874 58999999998 6777777654 44466654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.8e-14 Score=144.15 Aligned_cols=210 Identities=21% Similarity=0.270 Sum_probs=139.0
Q ss_pred cccccEEEEEEecC-CC-EEEeeCCCcEEEEECCCcce-eee-cCCCceeeeEEEEeeceeecccceeccceeeeecCCe
Q 003217 239 AHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEK-ALS-LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDI 314 (838)
Q Consensus 239 gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~~~~~-~~~-~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v 314 (838)
-|.+.|+++.+.+. |+ ++||+.||.|-|||++.... .-+ +.....+.. +..+.++... .+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v------------~~~h~~~Hky----~i 104 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIV------------AKQHENGHKY----AI 104 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeec------------cccCCcccee----ee
Confidence 58899999999874 66 78999999999999976321 000 000000000 0001111110 11
Q ss_pred EEE-EEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEe
Q 003217 315 KNL-LSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF 392 (838)
Q Consensus 315 ~~l-as~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~ 392 (838)
..+ -...+.+...+++ |.++++||..|-+..-+|...+.+ .+-++++.+
T Consensus 105 ss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~V-YshamSp~a---------------------------- 155 (397)
T KOG4283|consen 105 SSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKV-YSHAMSPMA---------------------------- 155 (397)
T ss_pred eeeEEeeecCceeecccccceEEEeecccceeeEEeecCcee-ehhhcChhh----------------------------
Confidence 111 1234566666666 679999999998776666554332 111111100
Q ss_pred ecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc--C
Q 003217 393 QRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--G 469 (838)
Q Consensus 393 ~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d--G 469 (838)
. .--.|++|..|-.|++-|+ .|.+-+++.||...|.++... .
T Consensus 156 ----------------------------------~-sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 156 ----------------------------------M-SHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred ----------------------------------h-cceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 0 0012677888889999999 799999999999999999664 3
Q ss_pred C-EEEEEeeCCeEEEEeCC---C----------c---ccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCC
Q 003217 470 S-QIWVGYMNGIVQVLDLE---G----------N---LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 470 ~-~LasGs~DgtIrlWD~~---g----------~---~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
+ .|++|+.||.||+||+. | + .+++-.+|.+.|.++++ |+.++++.++|..+|+|+..+.
T Consensus 201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 3 78899999999999964 2 1 13345688899999985 8999999999999999997653
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.7e-14 Score=140.08 Aligned_cols=242 Identities=14% Similarity=0.183 Sum_probs=150.9
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC--CCCEEEEEeCCCcEEEE
Q 003217 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWSGHRDGRIMCW 218 (838)
Q Consensus 142 ~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~--dg~~LaSGs~DGtIrvW 218 (838)
+.+|.+ ++|++|||+........ ...+.++ +| .+||.-+++.. -|.+|||+|+||+|.+|
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s--------------~ll~~L~--Gh-~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQS--------------KLLAELT--GH-SGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCc--------------eeeeEec--CC-CCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 556665 78999999998542210 0011111 23 89999999976 79999999999999999
Q ss_pred ECCCCccCCCCCcceeEEeccccccEEEEEEecCCC---EEEeeCCCcEEEEECCCc-ceeeecCCCceeeeEEEEeece
Q 003217 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAI-EKALSLKPEERHTAALIVERSY 294 (838)
Q Consensus 219 d~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~---L~SgS~DgtIrvWd~~~~-~~~~~~~~~~~~~~~~~~~~s~ 294 (838)
.-+++ ++.....+.+|...|++|+|-|.+. |+.||.||.|.|-+.++. .-..+- .
T Consensus 86 ke~~g------~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k-i-------------- 144 (299)
T KOG1332|consen 86 KEENG------RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK-I-------------- 144 (299)
T ss_pred ecCCC------chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh-h--------------
Confidence 98775 3566677889999999999999753 789999999999987652 100000 0
Q ss_pred eecccc-eeccceeeeecCCeEEEEEcC---CCCEEEEeC-CCcEEEEeccCccEE--EEEecCCceEEeeecccCcccc
Q 003217 295 IDLRSH-LSVNGFSSILTSDIKNLLSDH---SRAKVWSAG-FLSFALWDARTRELL--KVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 295 ~~l~~~-~~~~~~~~~~s~~v~~las~~---~~~~V~s~s-~~tI~lWD~~tg~~l--~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
..+| ..++.++-.|...--.+.... .-.++++++ |..|+||+...++-. ++|
T Consensus 145 --~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l------------------- 203 (299)
T KOG1332|consen 145 --VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL------------------- 203 (299)
T ss_pred --hhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh-------------------
Confidence 0001 011222222211100111111 113566766 678999987664210 112
Q ss_pred cccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCC-----CcEEEEECCCeE
Q 003217 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID-----GMIWTGGANGLL 442 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~d-----g~l~Sgs~DgtI 442 (838)
.+|...|+.++..|. .+|+|+|.||+|
T Consensus 204 ------------------------------------------------~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v 235 (299)
T KOG1332|consen 204 ------------------------------------------------EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV 235 (299)
T ss_pred ------------------------------------------------hhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence 223333333443332 368999999999
Q ss_pred EEEcCC--CCe--eeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEe--CCCcc
Q 003217 443 LQWDPN--GNR--LQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLD--LEGNL 490 (838)
Q Consensus 443 rlWD~~--g~~--l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD--~~g~~ 490 (838)
.||... ++. ...++.-...+..++ +.|..|++++.|+.|.||- ++|+-
T Consensus 236 iIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw 291 (299)
T KOG1332|consen 236 IIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKW 291 (299)
T ss_pred EEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcE
Confidence 999863 211 111222345677775 5799999999999999996 44653
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-13 Score=147.39 Aligned_cols=236 Identities=17% Similarity=0.227 Sum_probs=156.8
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCC-ceeeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcc
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAP-FKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLL 225 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~ 225 (838)
+..+.|.|||..+...... ..| +-.| ++-.+| ...=+.|.|++. ...|+||+.|++|.+||+.....
T Consensus 144 t~~~dv~Vfd~tk~~s~~~--------~~~--~~~Pdl~L~gH-~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~ 212 (422)
T KOG0264|consen 144 TSSGDVYVFDYTKHPSKPK--------ASG--ECRPDLRLKGH-EKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESK 212 (422)
T ss_pred CCCCCEEEEEeccCCCccc--------ccc--cCCCceEEEee-cccccccccccccceeEeeccCCCcEEEEecccccc
Confidence 3467999999865322110 111 1112 122223 444556888774 37899999999999999987521
Q ss_pred CCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceec
Q 003217 226 DSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSV 303 (838)
Q Consensus 226 ~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~ 303 (838)
+ .........+.+|...|..++|.+-.. +.|++.|+.+.|||+.+.+... .+. ..+|
T Consensus 213 ~-~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~------~~~-----------~~ah--- 271 (422)
T KOG0264|consen 213 E-DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP------SHS-----------VKAH--- 271 (422)
T ss_pred C-CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC------ccc-----------cccc---
Confidence 0 112334566899999999999998654 5799999999999997521100 000 0112
Q ss_pred cceeeeecCCeEEEEEcCC-CCEEEEeC-CCcEEEEeccC-ccEEEEEecCCceEEeeecccCcccccccceeeEEEecC
Q 003217 304 NGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSS 380 (838)
Q Consensus 304 ~~~~~~~s~~v~~las~~~-~~~V~s~s-~~tI~lWD~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~ 380 (838)
+.++.|+++.+- +..|++++ |++|+|||++. .+++.+|.
T Consensus 272 -------~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e------------------------------- 313 (422)
T KOG0264|consen 272 -------SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE------------------------------- 313 (422)
T ss_pred -------CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc-------------------------------
Confidence 667889998774 45677777 79999999975 22222322
Q ss_pred CCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC--cEEEEECCCeEEEEcCC--CCe-----
Q 003217 381 KKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG--MIWTGGANGLLLQWDPN--GNR----- 451 (838)
Q Consensus 381 ~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg--~l~Sgs~DgtIrlWD~~--g~~----- 451 (838)
+|...|..|.+||.. .|+|++.|+.+.+||++ |+.
T Consensus 314 ------------------------------------~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ed 357 (422)
T KOG0264|consen 314 ------------------------------------GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPED 357 (422)
T ss_pred ------------------------------------CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhh
Confidence 233334455666653 37899999999999983 432
Q ss_pred --------eeEeecCCccEEEEEEcC---CEEEEEeeCCeEEEEeCCCc
Q 003217 452 --------LQDFQYLPFAVQCLCTFG---SQIWVGYMNGIVQVLDLEGN 489 (838)
Q Consensus 452 --------l~tl~~H~~~V~sls~dG---~~LasGs~DgtIrlWD~~g~ 489 (838)
+-+-.||...|..++.+. -.|+|.+.|+.++||.....
T Consensus 358 a~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 358 AEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred hccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 244458999999887653 38999999999999997643
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-13 Score=139.16 Aligned_cols=295 Identities=16% Similarity=0.167 Sum_probs=179.7
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcc--CCCCCcceeE-----EeccccccEEEEEEecC--CCEEEeeC
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLL--DSDDGFGEVL-----SWQAHRGPVLSLCISSY--GDLWSGSE 260 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~--~~~~~~~~~~-----~l~gH~~~V~slafs~d--G~L~SgS~ 260 (838)
.++|.+|.+++ .|+++.||+.||.|-+||++.... .+.-..+... .-.+|+-+|.++-+=|- |-+.|+|.
T Consensus 43 gGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSF 122 (397)
T KOG4283|consen 43 GGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSF 122 (397)
T ss_pred CCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccc
Confidence 67999999998 589999999999999999976421 0000011111 12478889999988874 44679999
Q ss_pred CCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEec
Q 003217 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDA 339 (838)
Q Consensus 261 DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~ 339 (838)
|.++||||..+.+....+..++.. . .| ....++.+ ...|++|.+ -.|+|-|+
T Consensus 123 DhtlKVWDtnTlQ~a~~F~me~~V-Y------------sh------------amSp~a~s--HcLiA~gtr~~~VrLCDi 175 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDFKMEGKV-Y------------SH------------AMSPMAMS--HCLIAAGTRDVQVRLCDI 175 (397)
T ss_pred cceEEEeecccceeeEEeecCcee-e------------hh------------hcChhhhc--ceEEEEecCCCcEEEEec
Confidence 999999999886554444332210 0 01 01112222 234555554 47999999
Q ss_pred cCccEEEEEecCCceEEeeecccCccc-----ccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCc
Q 003217 340 RTRELLKVFNIDGQIENRVDMSLLPDF-----AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG 414 (838)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~-----~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~ 414 (838)
.+|.+-++|.+|.+-+-.++.++..+. +.|..+|.|.+.. +.+++...+.. .+.+ .....+
T Consensus 176 ~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRr-----asgcf~~lD~h--------n~k~-~p~~~~ 241 (397)
T KOG4283|consen 176 ASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRR-----ASGCFRVLDQH--------NTKR-PPILKT 241 (397)
T ss_pred cCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeec-----ccceeEEeecc--------cCcc-Cccccc
Confidence 999999999998875555555553322 1122222111110 00111111100 0000 000001
Q ss_pred cccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCC-eeeEee--cCCccEE-E--E-EEcCCEEEEEeeCCeEEEEe
Q 003217 415 FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGN-RLQDFQ--YLPFAVQ-C--L-CTFGSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 415 ~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~-~l~tl~--~H~~~V~-s--l-s~dG~~LasGs~DgtIrlWD 485 (838)
-..|..+|..++++.||. +|+++.|..+++|+. +|+ -++.+- .|+..+. . + +.+...++---.++++.|++
T Consensus 242 n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~ 321 (397)
T KOG4283|consen 242 NTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLN 321 (397)
T ss_pred cccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEE
Confidence 234778899999999987 899999999999998 663 233331 1222111 0 1 22222222223468899998
Q ss_pred C-CCcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecC
Q 003217 486 L-EGNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 486 ~-~g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~ 526 (838)
+ +|..++.|.+|-..|.+-+. +=+...+++.|+.|.-|-..
T Consensus 322 ~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 322 LLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred ccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence 6 48889999999888888765 44578999999999999863
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.9e-13 Score=151.09 Aligned_cols=330 Identities=12% Similarity=0.119 Sum_probs=207.9
Q ss_pred CCEEEE-ec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003217 142 EEQLWA-GG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (838)
Q Consensus 142 ~~~l~~-g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd 219 (838)
+..+.+ |. .|.+-+||++....... ....| .++|....|-|..-.|+|++.|...|+|-
T Consensus 256 G~p~las~~~~G~m~~wDLe~kkl~~v------------------~~nah-~~sv~~~~fl~~epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 256 GNPLLASGRSNGDMAFWDLEKKKLINV------------------TRNAH-YGSVTGATFLPGEPVLVTAGADNSLKVWV 316 (910)
T ss_pred CCeeEEeccCCceEEEEEcCCCeeeee------------------eeccc-cCCcccceecCCCceEeeccCCCceeEEE
Confidence 554544 43 35699999976443321 12233 56777777878888999999999999998
Q ss_pred CCCCccCCCCCcceeEEeccccccEEEEEEe-cCCC-EEEeeCCCcEEEEECCCcc--ee------------eecC----
Q 003217 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCIS-SYGD-LWSGSEGGGIKIWPWEAIE--KA------------LSLK---- 279 (838)
Q Consensus 220 ~~~g~~~~~~~~~~~~~l~gH~~~V~slafs-~dG~-L~SgS~DgtIrvWd~~~~~--~~------------~~~~---- 279 (838)
.+++.+ .-+.++.-.||..|-.+|.|- ..|. +.|++.|++.|..++.... +. +...
T Consensus 317 fD~~dg----~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~ 392 (910)
T KOG1539|consen 317 FDSGDG----VPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEK 392 (910)
T ss_pred eeCCCC----cchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhh
Confidence 776521 113344457999999999997 5676 7899999999999863200 00 0000
Q ss_pred CCceeeeEEEEee-----------------c--eeecccceeccceeeeec------CCeEEEEEcCCCCEEEEeCC-Cc
Q 003217 280 PEERHTAALIVER-----------------S--YIDLRSHLSVNGFSSILT------SDIKNLLSDHSRAKVWSAGF-LS 333 (838)
Q Consensus 280 ~~~~~~~~~~~~~-----------------s--~~~l~~~~~~~~~~~~~s------~~v~~las~~~~~~V~s~s~-~t 333 (838)
..-.....+..+. . .+.++.. +.+....-+. ..+++++.+++|..+..|.. ++
T Consensus 393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~-~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~ 471 (910)
T KOG1539|consen 393 LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK-TSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGT 471 (910)
T ss_pred hcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc-ccccEEecCccccccCcceEEEEEeccCceEEEeccCCe
Confidence 0000111111110 0 0111110 1111111122 45788888999998888764 78
Q ss_pred EEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--
Q 003217 334 FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-- 411 (838)
Q Consensus 334 I~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-- 411 (838)
|-++++++|-..+.|..... +..++..++.....+..+.+..+|+...|.
T Consensus 472 Id~fNmQSGi~r~sf~~~~a----------------------------h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~ 523 (910)
T KOG1539|consen 472 IDRFNMQSGIHRKSFGDSPA----------------------------HKGEVTGLAVDGTNRLLVSAGADGILKFWDFK 523 (910)
T ss_pred EEEEEcccCeeecccccCcc----------------------------ccCceeEEEecCCCceEEEccCcceEEEEecC
Confidence 99999999988777731110 001111112222223345566677777765
Q ss_pred cCcccc---CCCceEEEEEcC-CCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEE
Q 003217 412 KGGFGD---DNRRTEALTTSI-DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVL 484 (838)
Q Consensus 412 ~g~~~~---~~~~v~ala~S~-dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlW 484 (838)
+..+.. -...+..+.... .+.++.+.+|-.|++.|+ +-+..+.|.||++.|++++ +||++|++++.|++||+|
T Consensus 524 ~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~w 603 (910)
T KOG1539|consen 524 KKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTW 603 (910)
T ss_pred CcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEE
Confidence 111111 112223333322 345778888999999999 7788999999999999875 589999999999999999
Q ss_pred eCC-CcccccccccccCEEEEE--eCCCEEEEEcCC-CCeeeee
Q 003217 485 DLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANH-GGIRGWN 524 (838)
Q Consensus 485 D~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~D-gtIrlWd 524 (838)
|+- +.++-.+.- ..+..+|. +.|++|+|..-| ..|.+|-
T Consensus 604 Dlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 604 DLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eccCcceeeeEec-CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 976 777766643 34555555 688999999988 7899997
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-13 Score=138.36 Aligned_cols=272 Identities=16% Similarity=0.146 Sum_probs=163.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECC
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (838)
....|+.|++-|.+||+|..||.|.+||+.+. .....+.+|..+|+|+++|+||+ |+|+|.|..|++||+.
T Consensus 24 ~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 24 PLAECCQFSRWGDYLAVGCANGRVVIYDFDTF--------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL 95 (405)
T ss_pred CccceEEeccCcceeeeeccCCcEEEEEcccc--------chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEecc
Confidence 34889999999999999999999999999985 45567889999999999999998 7899999999999996
Q ss_pred CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEec
Q 003217 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (838)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~ 350 (838)
.+.....+... ..+.+....|...-++++.-- ...-.+-+...+.. .+|..
T Consensus 96 ~gs~l~rirf~-------------------spv~~~q~hp~k~n~~va~~~---------~~sp~vi~~s~~~h-~~Lp~ 146 (405)
T KOG1273|consen 96 KGSPLKRIRFD-------------------SPVWGAQWHPRKRNKCVATIM---------EESPVVIDFSDPKH-SVLPK 146 (405)
T ss_pred CCCceeEEEcc-------------------CccceeeeccccCCeEEEEEe---------cCCcEEEEecCCce-eeccC
Confidence 65422111000 000111111111222222110 00001111111000 11110
Q ss_pred CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCcc------ccCC-CceE
Q 003217 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF------GDDN-RRTE 423 (838)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~------~~~~-~~v~ 423 (838)
+.+.... .+.+ ...|...+..+++|+..|-..+-...++ .-.. ..|.
T Consensus 147 ------------d~d~dln-------~sas-------~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK 200 (405)
T KOG1273|consen 147 ------------DDDGDLN-------SSAS-------HGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIK 200 (405)
T ss_pred ------------CCccccc-------cccc-------cccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeee
Confidence 0000000 0000 0123444567788887775555432111 1111 4456
Q ss_pred EEEEcCCCc-EEEEECCCeEEEEcCC-----CC-----eeeEeec---CCccE-EEEEEcCCEEEEEee-CCeEEEEeCC
Q 003217 424 ALTTSIDGM-IWTGGANGLLLQWDPN-----GN-----RLQDFQY---LPFAV-QCLCTFGSQIWVGYM-NGIVQVLDLE 487 (838)
Q Consensus 424 ala~S~dg~-l~Sgs~DgtIrlWD~~-----g~-----~l~tl~~---H~~~V-~sls~dG~~LasGs~-DgtIrlWD~~ 487 (838)
.+.++..|. ++.-+.|..||.+++. |+ ..+.++. -..+= .|++-+|.++.+|+. -..++||...
T Consensus 201 ~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 201 QIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKS 280 (405)
T ss_pred EEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecC
Confidence 677888887 7899999999999863 21 1111211 01111 134457889988874 6799999987
Q ss_pred -Ccccccccccc-cCEEEEEeCCCE--EEEEcCCCCeeeeecCC
Q 003217 488 -GNLLGGWVAHS-SPVIKMAVGAGY--IFTLANHGGIRGWNVTS 527 (838)
Q Consensus 488 -g~~i~~l~gH~-~~V~sla~dg~~--l~S~S~DgtIrlWdl~s 527 (838)
|.+++.|.|.. .....|.+++-. ++|. ..|+|++|....
T Consensus 281 ~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 281 IGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred CcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 89999998887 456667777653 5555 678999999654
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.9e-14 Score=147.76 Aligned_cols=257 Identities=13% Similarity=0.133 Sum_probs=159.7
Q ss_pred EEeccccccEEEEEEecCC--CEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecC
Q 003217 235 LSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTS 312 (838)
Q Consensus 235 ~~l~gH~~~V~slafs~dG--~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~ 312 (838)
..|.||+..|.+++=.|.. .++|||.||.||+||+....+..++.. | .+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~A-------------------H----------~G 110 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKA-------------------H----------EG 110 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeec-------------------c----------cC
Confidence 4568999999999999976 378999999999999976554443332 2 22
Q ss_pred CeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeeccc-CcccccccceeeEEEecCCCCcceeeeeE
Q 003217 313 DIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSL-LPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (838)
Q Consensus 313 ~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~s~~~~~~~~~s~~~ 391 (838)
-|+-++.+. +..+.+|.|++|+.|.+.- .+++++-+++.+. .++... ...+.-.. ..+.+|...+ +...
T Consensus 111 ~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~-gIdh~~~~~~FaTcG-e~i~IWD~~R-~~Pv----- 180 (433)
T KOG0268|consen 111 LVRGICVTQ-TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYL-GIDHHRKNSVFATCG-EQIDIWDEQR-DNPV----- 180 (433)
T ss_pred ceeeEEecc-cceEEecCCcceeeeeccC-Ccceeeecccccc-ccccccccccccccC-ceeeeccccc-CCcc-----
Confidence 344455543 5566666688999998764 3556655443221 000000 00000000 0001111100 0000
Q ss_pred eecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc--EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEE--
Q 003217 392 FQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC-- 466 (838)
Q Consensus 392 ~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~--l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls-- 466 (838)
..+.=....+.++.|+|-.+ |++|.+|++|.|+|+ ++..++.... +-.-+.|+
T Consensus 181 ---------------------~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~Iswn 238 (433)
T KOG0268|consen 181 ---------------------SSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWN 238 (433)
T ss_pred ---------------------ceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecC
Confidence 00111123456778888765 677879999999999 6766554432 11223444
Q ss_pred EcCCEEEEEeeCCeEEEEeCC--CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCCCchhhhhhhhcc
Q 003217 467 TFGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGK 542 (838)
Q Consensus 467 ~dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~~d~~~~~~l~~r 542 (838)
|.+-.+.+|++|..+..+|.. ...+.+..+|.++|.+|.+ -|+-++|||.|++|||+.+.-. .+|
T Consensus 239 PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~-----------~SR 307 (433)
T KOG0268|consen 239 PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG-----------HSR 307 (433)
T ss_pred ccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCC-----------cch
Confidence 444578889999999999987 5689999999999999985 5778999999999999986532 234
Q ss_pred ccccccccceeeEEEEEEeCCC
Q 003217 543 EFLYTRMENLKILAGTWNVGQG 564 (838)
Q Consensus 543 ~~~y~~~~~~~i~~~twNv~~~ 564 (838)
+.+|+..- -+++..-|.+..+
T Consensus 308 diYhtkRM-q~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 308 DIYHTKRM-QHVFCVKYSMDSK 328 (433)
T ss_pred hhhhHhhh-heeeEEEEecccc
Confidence 44444322 2477777777644
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.8e-13 Score=152.77 Aligned_cols=233 Identities=19% Similarity=0.196 Sum_probs=166.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (838)
+..-+.++++|+|..|.+++.||.||+|+..... +...++.-|...|.+++.... .|++|+.+++|.++...
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-------e~P~ti~~~g~~v~~ia~~s~-~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-------EEPETIDISGELVSSIACYSN-HFLTGSEQNTVLRYKFP 84 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-------cCCchhhccCceeEEEeeccc-ceEEeeccceEEEeeCC
Confidence 6678889999999999999999999999976531 122222227788888887653 69999999999999886
Q ss_pred CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCC-cEEEEeccCccEEEEEe
Q 003217 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-SFALWDARTRELLKVFN 349 (838)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~-tI~lWD~~tg~~l~~l~ 349 (838)
..+..- -+. ..+-.++.++++.+|..++.|++. .|++-++.+....+++
T Consensus 85 s~~~~~-------iL~----------------------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l- 134 (933)
T KOG1274|consen 85 SGEEDT-------ILA----------------------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL- 134 (933)
T ss_pred CCCccc-------eee----------------------eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee-
Confidence 533210 001 114467888888888898888864 6777776544333332
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~ 429 (838)
.+|...|.+|.++|
T Consensus 135 ------------------------------------------------------------------rgh~apVl~l~~~p 148 (933)
T KOG1274|consen 135 ------------------------------------------------------------------RGHDAPVLQLSYDP 148 (933)
T ss_pred ------------------------------------------------------------------cccCCceeeeeEcC
Confidence 23445566788888
Q ss_pred CCc-EEEEECCCeEEEEcC-CCCeeeEeec-------CCccEEE-EE--EcCCEEEEEeeCCeEEEEeCCC-ccccccc-
Q 003217 430 DGM-IWTGGANGLLLQWDP-NGNRLQDFQY-------LPFAVQC-LC--TFGSQIWVGYMNGIVQVLDLEG-NLLGGWV- 495 (838)
Q Consensus 430 dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~-------H~~~V~s-ls--~dG~~LasGs~DgtIrlWD~~g-~~i~~l~- 495 (838)
.+. |++.+.||+|++||+ ++.+..++.+ ....|.+ ++ ++|..+++-..|++|++++..+ .....+.
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~ 228 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD 228 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc
Confidence 887 688889999999999 7888877764 1123332 33 4677788888999999999884 3333332
Q ss_pred -ccccCEEEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 496 -AHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 496 -gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
-|+..+..+. +.|+||++++.||.|-|||+.+
T Consensus 229 ~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 229 KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 3344355555 5799999999999999999876
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-11 Score=134.44 Aligned_cols=330 Identities=17% Similarity=0.208 Sum_probs=197.2
Q ss_pred ccccCCCCCCCceeecCC-------CCCccccCceeEEEEecCC-EEEEecCCCEEEEeCCCCccccccccccccCCCCC
Q 003217 107 VRAALHPARPPSLEVKPH-------PLRETQIGCFLRTIVCTEE-QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGE 178 (838)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~-~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~ 178 (838)
.+.++...+|+-+.+=-. |..-.+..-+..++-.... .+.+..-+.+.+|+++.......
T Consensus 170 ~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~------------ 237 (626)
T KOG2106|consen 170 LLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKR------------ 237 (626)
T ss_pred eEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEE------------
Confidence 455666666664444221 2222222223333333344 44456788999998865432211
Q ss_pred CCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEe
Q 003217 179 DGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSG 258 (838)
Q Consensus 179 ~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~Sg 258 (838)
...|.. -. ..-|+||+|.++|. ++||.++|.|-+|+..+. +...+-.+|.+.|.+++.-.+|+|+||
T Consensus 238 --~~~fek-~e-kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~--------~~~k~~~aH~ggv~~L~~lr~GtllSG 304 (626)
T KOG2106|consen 238 --QGIFEK-RE-KKFVLCVTFLENGD-VITGDSGGNILIWSKGTN--------RISKQVHAHDGGVFSLCMLRDGTLLSG 304 (626)
T ss_pred --eecccc-cc-ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc--------eEEeEeeecCCceEEEEEecCccEeec
Confidence 111211 11 34699999998776 569999999999998664 344444599999999999999999999
Q ss_pred eCCCcEEEEECCCcc-eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEE
Q 003217 259 SEGGGIKIWPWEAIE-KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFAL 336 (838)
Q Consensus 259 S~DgtIrvWd~~~~~-~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~l 336 (838)
+.|..|-+||-.-.+ ....+..+ .+.++.++-+..+ +..|. .+.|.-
T Consensus 305 gKDRki~~Wd~~y~k~r~~elPe~-----------------------------~G~iRtv~e~~~d--i~vGTtrN~iL~ 353 (626)
T KOG2106|consen 305 GKDRKIILWDDNYRKLRETELPEQ-----------------------------FGPIRTVAEGKGD--ILVGTTRNFILQ 353 (626)
T ss_pred CccceEEeccccccccccccCchh-----------------------------cCCeeEEecCCCc--EEEeeccceEEE
Confidence 999999999932111 11111110 2234555544333 33332 233333
Q ss_pred EeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCcc-
Q 003217 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF- 415 (838)
Q Consensus 337 WD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~- 415 (838)
=.++++--+.++ +|+.-...+ ...+...+.++...+...++|.+..+
T Consensus 354 Gt~~~~f~~~v~-gh~delwgl-------------------------------a~hps~~q~~T~gqdk~v~lW~~~k~~ 401 (626)
T KOG2106|consen 354 GTLENGFTLTVQ-GHGDELWGL-------------------------------ATHPSKNQLLTCGQDKHVRLWNDHKLE 401 (626)
T ss_pred eeecCCceEEEE-ecccceeeE-------------------------------EcCCChhheeeccCcceEEEccCCcee
Confidence 333333322222 222110011 11122223344444544444432111
Q ss_pred -cc-CCCceEEEEEcCCCcEEEEECCCeEEEEcCCCCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCC--Cc
Q 003217 416 -GD-DNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE--GN 489 (838)
Q Consensus 416 -~~-~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~--g~ 489 (838)
.. -...+.++.|.|-|.++.|+..|.--+.|.+.+.+-++...+.+++++ +++|.+||.|+.|+.|.||-+. |.
T Consensus 402 wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 402 WTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred EEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence 11 123566888999999999999998888888555444444347788877 4689999999999999999865 54
Q ss_pred c-cccccccccCEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 490 L-LGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 490 ~-i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
. .+.-+-|-.+|+.+.+ |++++.+-|.|--|-.|.
T Consensus 482 ~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 482 KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 3 2322333378888874 899999999999999993
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-13 Score=145.97 Aligned_cols=256 Identities=16% Similarity=0.237 Sum_probs=156.4
Q ss_pred CCCCCCceeecCCCCCccccCceeEEEEecCCEEEEec-CCCEEEEeCCCCccccccccccccCC----CCCCCCCCcee
Q 003217 112 HPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKS----KGEDGTAPFKE 186 (838)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~ 186 (838)
.|.-|-|+|-.-+|+.+...|.++ .+|+ |..|-|||+.-...... -+.+|.. ........+..
T Consensus 172 lpafPLC~ewld~~~~~~~~gNyv----------AiGtmdp~IeIWDLDI~d~v~P--~~~LGs~~sk~~~k~~k~~~~~ 239 (463)
T KOG0270|consen 172 LPAFPLCIEWLDHGSKSGGAGNYV----------AIGTMDPEIEIWDLDIVDAVLP--CVTLGSKASKKKKKKGKRSNSA 239 (463)
T ss_pred ccCcchhhhhhhcCCCCCCCcceE----------EEeccCceeEEecccccccccc--ceeechhhhhhhhhhccccccc
Confidence 566666666666665555544443 4454 88999999953221111 0123311 11111111222
Q ss_pred eecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC-C-EEEeeCCCc
Q 003217 187 SVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGG 263 (838)
Q Consensus 187 ~~~g~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~Dgt 263 (838)
+.| +..|..|++...- ..|||||.|.||++||++++ ++..++..|.+.|.++.|.|.- . |+|||.|++
T Consensus 240 ~gH-Tdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g--------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~ 310 (463)
T KOG0270|consen 240 SGH-TDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG--------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGT 310 (463)
T ss_pred ccc-hHHHHHHHhccccceeEEecCCCceEEEEEcCCC--------CcceehhhcCCceeEEEecCCCceEEEeccccce
Confidence 334 7788888887543 68999999999999999998 6677888899999999999975 3 899999999
Q ss_pred EEEEECCCc---ceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCC-CEEEEeC-CCcEEEEe
Q 003217 264 IKIWPWEAI---EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWD 338 (838)
Q Consensus 264 IrvWd~~~~---~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~V~s~s-~~tI~lWD 338 (838)
|++.|.... ...+++ .++|-.++-.+.. ....++. +++++-.|
T Consensus 311 V~l~D~R~~~~s~~~wk~--------------------------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D 358 (463)
T KOG0270|consen 311 VALKDCRDPSNSGKEWKF--------------------------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFD 358 (463)
T ss_pred EEeeeccCccccCceEEe--------------------------------ccceEEEEecCCCceeEEEecCCceEEeee
Confidence 999998531 111111 2233333333221 2223333 46788888
Q ss_pred ccCc-cEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCcccc
Q 003217 339 ARTR-ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGD 417 (838)
Q Consensus 339 ~~tg-~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~ 417 (838)
++.- +++.++..|.+
T Consensus 359 ~R~~~~~vwt~~AHd~---------------------------------------------------------------- 374 (463)
T KOG0270|consen 359 IRNPGKPVWTLKAHDD---------------------------------------------------------------- 374 (463)
T ss_pred cCCCCCceeEEEeccC----------------------------------------------------------------
Confidence 8763 55444443322
Q ss_pred CCCceEEEEE--cCCCcEEEEECCCeEEEEcCCCCeeeEeecCC---ccEEEEEEcC---CEEEEEeeCCeEEEEeCC
Q 003217 418 DNRRTEALTT--SIDGMIWTGGANGLLLQWDPNGNRLQDFQYLP---FAVQCLCTFG---SQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 418 ~~~~v~ala~--S~dg~l~Sgs~DgtIrlWD~~g~~l~tl~~H~---~~V~sls~dG---~~LasGs~DgtIrlWD~~ 487 (838)
.|..|.+ ...+.+.++++|++|++|++.+..-+....|. +...|++++. -.++.|+..+.++|||..
T Consensus 375 ---~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 375 ---EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred ---CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 1122222 22456889999999999998543222222222 2344555542 388889998899999975
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-12 Score=149.53 Aligned_cols=251 Identities=17% Similarity=0.240 Sum_probs=173.6
Q ss_pred CCCcCcccccCCCcccccCcccccC---CCCCCCceeecCCCCCccccCceeEEEEecCCEEEEe-cCCCEEEEeCCCCc
Q 003217 87 SSSLPEYIGKGGDIPMFKPPVRAAL---HPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAG-GENGLRVWNLKELY 162 (838)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g-~d~~vrvWd~~~~~ 162 (838)
..+-.|||-.+|.+|. ||.+- ..+.|+.+.. .|.++..+++....|.++ .+++|.+|.+..+.
T Consensus 21 ~d~~gefi~tcgsdg~----ir~~~~~sd~e~P~ti~~---------~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 21 YDPDGEFICTCGSDGD----IRKWKTNSDEEEPETIDI---------SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred EcCCCCEEEEecCCCc----eEEeecCCcccCCchhhc---------cCceeEEEeecccceEEeeccceEEEeeCCCCC
Confidence 3566789988888776 44432 3356666554 456899999998877775 57899999997755
Q ss_pred cccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccc
Q 003217 163 DESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG 242 (838)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~ 242 (838)
..+. .++| +-|+.+++|+.+|+++|.||.|-.|++-++.+. .....++||.+
T Consensus 88 ~~~i--------------L~Rf------tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~--------s~~~~lrgh~a 139 (933)
T KOG1274|consen 88 EDTI--------------LARF------TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS--------SQEKVLRGHDA 139 (933)
T ss_pred ccce--------------eeee------eccceEEEEecCCcEEEeecCceeEEEEecccc--------chheeecccCC
Confidence 4321 2233 558999999999999999999999999999886 56788999999
Q ss_pred cEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC
Q 003217 243 PVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH 321 (838)
Q Consensus 243 ~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~ 321 (838)
+|.+|.|+|.|. |++.+-||.|++|+++++....++..-.. .+.+. .+.-+..++..+
T Consensus 140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k-------------------~n~~~--~s~i~~~~aW~P 198 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDK-------------------DNEFI--LSRICTRLAWHP 198 (933)
T ss_pred ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCc-------------------ccccc--ccceeeeeeecC
Confidence 999999999999 68999999999999987654433322110 01110 012233455566
Q ss_pred CCCEE-EEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceee
Q 003217 322 SRAKV-WSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (838)
Q Consensus 322 ~~~~V-~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~ 400 (838)
+++.+ +.+.+++|++++..+.+....|..+.
T Consensus 199 k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~------------------------------------------------ 230 (933)
T KOG1274|consen 199 KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL------------------------------------------------ 230 (933)
T ss_pred CCCeEEeeccCCeEEEEccCCceeheeecccc------------------------------------------------
Confidence 65544 44557888888877766544432110
Q ss_pred ecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE
Q 003217 401 GAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT 467 (838)
Q Consensus 401 g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~ 467 (838)
+...+..+.+||.|+ |++++.||.|-|||++.-..+.+ ...|+|+++
T Consensus 231 -----------------~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~---~~~Vc~~aw 278 (933)
T KOG1274|consen 231 -----------------SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEF---KRAVCCEAW 278 (933)
T ss_pred -----------------cccceEEEEEcCCCcEEeeeccCCcEEEEecccchhccc---cceeEEEec
Confidence 111245678999998 89999999999999954211221 245666654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-13 Score=151.06 Aligned_cols=259 Identities=15% Similarity=0.182 Sum_probs=158.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcce--eEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeec
Q 003217 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGE--VLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSL 278 (838)
Q Consensus 203 g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~--~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~ 278 (838)
-.+||.+-.||.|.++|...-. ...++ ...|.+|.++|..+.+-| |+ |++++.|.|||+||+.+....-.
T Consensus 64 eHiLavadE~G~i~l~dt~~~~----fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~- 137 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIV----FRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGG- 137 (720)
T ss_pred cceEEEecCCCceeeecchhhh----cchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecc-
Confidence 4689999999999999976632 11111 355789999999999999 75 79999999999999976432110
Q ss_pred CCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEec-CCceE
Q 003217 279 KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNI-DGQIE 355 (838)
Q Consensus 279 ~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~-~~~~~ 355 (838)
. . ..+| ...++.+++.+.+..|++.+ |+.|.|||++-... ..+.- ...+
T Consensus 138 -----~-~----------~~GH----------~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~-d~~e~~~~~~- 189 (720)
T KOG0321|consen 138 -----R-L----------NLGH----------TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGV-DALEEFDNRI- 189 (720)
T ss_pred -----e-e----------eccc----------ccccchhhhccCCCcceeeccCCCcEEEEEEeccch-hhHHHHhhhh-
Confidence 0 0 0012 44577777777666555443 67899999864321 11100 0000
Q ss_pred EeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEE
Q 003217 356 NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWT 435 (838)
Q Consensus 356 ~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~S 435 (838)
...... . .... +..++ ....+.++. +++ ...|+.+.|-++..|+|
T Consensus 190 ---~~~~n~--~-ptps-----kp~~k------------r~~k~kA~s---------~ti---~ssvTvv~fkDe~tlaS 234 (720)
T KOG0321|consen 190 ---YGRHNT--A-PTPS-----KPLKK------------RIRKWKAAS---------NTI---FSSVTVVLFKDESTLAS 234 (720)
T ss_pred ---hccccC--C-CCCC-----chhhc------------ccccccccc---------Cce---eeeeEEEEEeccceeee
Confidence 000000 0 0000 00000 000000000 011 12356677777778999
Q ss_pred EEC-CCeEEEEcC-CCCe------eeEe--ecC---CccEEEEEEc--CCEEEEEeeCCeEEEEeCCC---ccccccccc
Q 003217 436 GGA-NGLLLQWDP-NGNR------LQDF--QYL---PFAVQCLCTF--GSQIWVGYMNGIVQVLDLEG---NLLGGWVAH 497 (838)
Q Consensus 436 gs~-DgtIrlWD~-~g~~------l~tl--~~H---~~~V~sls~d--G~~LasGs~DgtIrlWD~~g---~~i~~l~gH 497 (838)
+++ |++||+||+ +..+ ++.. ..| ...+.+|..| |.+|.+.+.|++|.+||+.+ .....+.+|
T Consensus 235 aga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~ 314 (720)
T KOG0321|consen 235 AGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGK 314 (720)
T ss_pred ccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCc
Confidence 887 999999998 4322 2222 223 2346677665 78888878899999999863 356666666
Q ss_pred ccC---EEE-EEeCCCEEEEEcCCCCeeeeecCCCCC
Q 003217 498 SSP---VIK-MAVGAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 498 ~~~---V~s-la~dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
... |.+ +.+|+.+++||+.|..+.+|.+.++..
T Consensus 315 ~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 315 LNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred ccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence 432 333 347999999999999999999887553
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-13 Score=149.41 Aligned_cols=263 Identities=19% Similarity=0.320 Sum_probs=157.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
...|..++|.+-...|++++.||++++|++..........++.+.+|.||.++|.|++++++++ ++||+.||+||.|++
T Consensus 294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~ 373 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL 373 (577)
T ss_pred hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeecc
Confidence 5578888888888899999999999999994322122356788999999999999999999998 899999999999987
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
.... .+...+-.. .+ .+.-.-+...+..++.+....++.+++ |+|+++|+...... .+|
T Consensus 374 p~n~-----dp~ds~dp~--------vl------~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 374 PPNQ-----DPDDSYDPS--------VL------SGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred CCCC-----CcccccCcc--------hh------ccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-ccc
Confidence 4211 111000000 00 000001144555677776666677665 78999999876655 444
Q ss_pred ecCCceE--EeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 349 NIDGQIE--NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 349 ~~~~~~~--~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
....... .++++ ...+..... .+...++.. + .+...+..+
T Consensus 434 ~~~~e~g~Plsvd~-----------------~ss~~a~~~----------------~s~~~~~~~---~-~~~ev~s~~- 475 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDR-----------------TSSRPAHSL----------------ASFRFGYTS---I-DDMEVVSDL- 475 (577)
T ss_pred CCccccCCcceEee-----------------ccchhHhhh----------------hhccccccc---c-hhhhhhhhe-
Confidence 3211100 00000 000000000 000000000 0 000000000
Q ss_pred EcCCCcEEEEECCCeEEEEcCCCCeeeEeecCCccEEEE-E-EcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEE
Q 003217 427 TSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCL-C-TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (838)
Q Consensus 427 ~S~dg~l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sl-s-~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s 503 (838)
+++-.+.+...+.. ..++-+ + +.+.+.+++..|++|+++|.. ++++....+|-..|++
T Consensus 476 -----~~~~s~~~~~~~~~--------------~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svts 536 (577)
T KOG0642|consen 476 -----LIFESSASPGPRRY--------------PQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTS 536 (577)
T ss_pred -----eeccccCCCccccc--------------CccceEEecCCCCeeEecccCCceecccccccccchheeeccceecc
Confidence 01111111111111 112222 2 235678888999999999976 8999999999999999
Q ss_pred EEe--CCCEEEEEcCCCCeeeeecCCCCC
Q 003217 504 MAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 504 la~--dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
++. .|-++++++.|+.|++|.+..+.+
T Consensus 537 lai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 537 LAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred eeecCCCceEEeecCCceeehhhccchhe
Confidence 986 456899999999999999866544
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.7e-12 Score=129.16 Aligned_cols=115 Identities=13% Similarity=0.172 Sum_probs=81.1
Q ss_pred cCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC--CCCEEEEEeCCCcEEE
Q 003217 141 TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWSGHRDGRIMC 217 (838)
Q Consensus 141 ~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~--dg~~LaSGs~DGtIrv 217 (838)
.++++.+ ++|.+|+|||+.+...... .++..+ .| .++|..+.+.+ =|+.||+.|+|+++++
T Consensus 24 ~GRRmAtCSsDq~vkI~d~~~~s~~W~-------------~Ts~Wr--ah-~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 24 YGRRMATCSSDQTVKIWDSTSDSGTWS-------------CTSSWR--AH-DGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCceeeeccCCCcEEEEeccCCCCceE-------------EeeeEE--ec-CCcEEEEEecCccccceEEEEecCCceee
Confidence 4888888 5699999999744322111 011111 23 78999999965 3799999999999999
Q ss_pred EECCCCcc-CCCCCcceeEEeccccccEEEEEEecC--CC-EEEeeCCCcEEEEECCC
Q 003217 218 WKMNARLL-DSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 218 Wd~~~g~~-~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~~ 271 (838)
|.-....- -.......+.++.--+..|+.|.|.|- |- |++++.||++||++.-.
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d 145 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD 145 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence 97521100 011344556667778899999999996 43 79999999999999743
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-12 Score=143.57 Aligned_cols=261 Identities=14% Similarity=0.198 Sum_probs=185.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
.|..++|-|||..|+.+..| .+-++|.+.| ....+++||++.|++|+++.||+ ++||+.|+.|-||+-.-
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG--------~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDG--------TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL 84 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCc--------ccccccccccceEEEEEEccCCceeccCCCceeEEEecccc
Confidence 78899999999888776654 5679999988 67889999999999999999998 68999999999998521
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecC
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNID 351 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~ 351 (838)
+..+.+ .+...+.|+.+.+....+++++-..+-+|....+.+.+.-
T Consensus 85 -EG~LkY------------------------------SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~k--- 130 (1081)
T KOG1538|consen 85 -EGILKY------------------------------SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHK--- 130 (1081)
T ss_pred -cceeee------------------------------ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhh---
Confidence 111111 1144577888888888888877666778887655442210
Q ss_pred CceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec-----cCccc---cCCCceE
Q 003217 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-----KGGFG---DDNRRTE 423 (838)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-----~g~~~---~~~~~v~ 423 (838)
... + ..+...-.++...++|+.+|.+.+.. ++... +.+..|.
T Consensus 131 -ss~-----------------R------------~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiw 180 (1081)
T KOG1538|consen 131 -SSS-----------------R------------IICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIW 180 (1081)
T ss_pred -hhe-----------------e------------EEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCce
Confidence 000 0 00011112234456777777665543 12222 3567888
Q ss_pred EEEEcCCC------cEEEEECCCeEEEEcCCCCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCCCccccccc
Q 003217 424 ALTTSIDG------MIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLEGNLLGGWV 495 (838)
Q Consensus 424 ala~S~dg------~l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~g~~i~~l~ 495 (838)
+++++|.. .++...-..|+..+.+.|+.+..-..-.-.-.|+ .++|.++..|+.|+.+.++-.+|-.+.++.
T Consensus 181 si~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg 260 (1081)
T KOG1538|consen 181 SICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVG 260 (1081)
T ss_pred EEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeecc
Confidence 89988752 3566666678888888886654211111112355 458999999999999999999998888888
Q ss_pred ccccCEEEEE--eCCCEEEEEcCCCCeeeeecC
Q 003217 496 AHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 496 gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~ 526 (838)
-...+||+++ +++++++-|..||||-.+++.
T Consensus 261 ~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 261 EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 8889999997 688899999999999999964
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-11 Score=123.13 Aligned_cols=180 Identities=19% Similarity=0.267 Sum_probs=126.2
Q ss_pred ceeEEEEecCCEEEEecCCCEEEEeCCCCcc-ccccccccccCCCCCCCCCCcee-eecCCCCeEEEEEcCCCCEEEEEe
Q 003217 133 CFLRTIVCTEEQLWAGGENGLRVWNLKELYD-ESESDSVSVSKSKGEDGTAPFKE-SVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 133 ~~~~~l~~~~~~l~~g~d~~vrvWd~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~-~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
-+++.++.+++.|.++.|+.||=|.-.+... ..+ .+-=+...|++. .+. ...|.+|-++|..+-|..++
T Consensus 63 gpiy~~~f~d~~Lls~gdG~V~gw~W~E~~es~~~--------K~lwe~~~P~~~~~~e-vPeINam~ldP~enSi~~Ag 133 (325)
T KOG0649|consen 63 GPIYYLAFHDDFLLSGGDGLVYGWEWNEEEESLAT--------KRLWEVKIPMQVDAVE-VPEINAMWLDPSENSILFAG 133 (325)
T ss_pred CCeeeeeeehhheeeccCceEEEeeehhhhhhccc--------hhhhhhcCccccCccc-CCccceeEeccCCCcEEEec
Confidence 4688899999899999999999997754322 111 011122233322 112 44689999999888888888
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEE-ecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI-SSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slaf-s~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
-|+.+..||+++| +..++++||++.|.+++- +.+++++||++|||+||||..++++...+.... +..
T Consensus 134 GD~~~y~~dlE~G--------~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk-~~~--- 201 (325)
T KOG0649|consen 134 GDGVIYQVDLEDG--------RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYK-NPN--- 201 (325)
T ss_pred CCeEEEEEEecCC--------EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecccc-Chh---
Confidence 9999999999998 677889999999999998 778899999999999999998866543332110 000
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEec
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~ 350 (838)
.+|-+ . ..-+-+++. +...+.+|+...+.||.+++-++..+|..
T Consensus 202 ------~lRp~---~------g~wigala~--~edWlvCGgGp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 202 ------LLRPD---W------GKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred ------hcCcc---c------CceeEEEec--cCceEEecCCCceeEEeccCCCceEEEec
Confidence 01101 0 112344444 45677788877899999999888777753
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-11 Score=132.05 Aligned_cols=230 Identities=13% Similarity=0.124 Sum_probs=167.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.-.|+.+.++++...+++++.|-.||+|..... .+......|.++|+.+...|.|+ |+++|.|++...-|.
T Consensus 261 ~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~--------s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~ 332 (506)
T KOG0289|consen 261 TKKITSVKFHKDLDTVITASADEIIRVWSVPLS--------SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI 332 (506)
T ss_pred ceEEEEEEeccchhheeecCCcceEEeeccccc--------cCccccccccccceeeeeccCCcEEEEecCCceEEEEEc
Confidence 668999999999999999999999999998775 45566789999999999999998 899999999988888
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
.++........+. . .-++.+.++.++|-.+.++. ++.+++||+.++..+..|
T Consensus 333 ~~g~~lt~vs~~~---------------------s------~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F 385 (506)
T KOG0289|consen 333 SSGSQLTVVSDET---------------------S------DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF 385 (506)
T ss_pred cCCcEEEEEeecc---------------------c------cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC
Confidence 7654332221110 0 11356677877777776666 578999999988776666
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc------Cccc-cCCCc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFG-DDNRR 421 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~------g~~~-~~~~~ 421 (838)
.+|... +.++.|.+++-...+++.++..++|.. .++. .+...
T Consensus 386 pght~~-------------------------------vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~ 434 (506)
T KOG0289|consen 386 PGHTGP-------------------------------VKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKE 434 (506)
T ss_pred CCCCCc-------------------------------eeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccccc
Confidence 665433 234567777766677777774444441 1121 23346
Q ss_pred eEEEEEcCCCc-EEEEECCCeEEEEcCC---CCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeC
Q 003217 422 TEALTTSIDGM-IWTGGANGLLLQWDPN---GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL 486 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs~DgtIrlWD~~---g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~ 486 (838)
+.++.|++-|+ |++++.|=.|.+.+-. -.++.++..|.+..+++.+ .-+++++|+.|..++|+-+
T Consensus 435 v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 435 VNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 88899999888 6677655455555532 2678888889988888877 3569999999999988753
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-13 Score=159.60 Aligned_cols=243 Identities=16% Similarity=0.203 Sum_probs=173.9
Q ss_pred CeEEEEEcCCCC----EEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEE
Q 003217 193 SVMCMVGDEASG----VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKI 266 (838)
Q Consensus 193 ~V~~la~s~dg~----~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrv 266 (838)
.-++|+|.+-|. +||.|..||.|.+||...-. .+.....+.+..-|+++|.+|.|++.+. |+||+.||.|.|
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~--~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII--ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhc--cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 456788876554 59999999999999976520 0122234556788999999999999865 789999999999
Q ss_pred EECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCC-CEEEEeCC-CcEEEEeccCccE
Q 003217 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAGF-LSFALWDARTREL 344 (838)
Q Consensus 267 Wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~V~s~s~-~tI~lWD~~tg~~ 344 (838)
||+...+..++.. ...+..+|++++-...- ..+++++. +.+.|||++..+.
T Consensus 144 WDlnn~~tP~~~~---------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p 196 (1049)
T KOG0307|consen 144 WDLNKPETPFTPG---------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP 196 (1049)
T ss_pred eccCCcCCCCCCC---------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc
Confidence 9996533222110 00124566666653322 24555554 4788999987655
Q ss_pred EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEE
Q 003217 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (838)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (838)
+..|..++. ...+..
T Consensus 197 ii~ls~~~~-----------------------------------------------------------------~~~~S~ 211 (1049)
T KOG0307|consen 197 IIKLSDTPG-----------------------------------------------------------------RMHCSV 211 (1049)
T ss_pred ccccccCCC-----------------------------------------------------------------ccceee
Confidence 433321110 011234
Q ss_pred EEEcCCC--cEEEEECCC---eEEEEcC--CCCeeeEeecCCccEEEEEE---cCCEEEEEeeCCeEEEEeCC-Cccccc
Q 003217 425 LTTSIDG--MIWTGGANG---LLLQWDP--NGNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (838)
Q Consensus 425 la~S~dg--~l~Sgs~Dg---tIrlWD~--~g~~l~tl~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i~~ 493 (838)
|++.|+. +|++++.|. .|.+||+ ....++++++|...|.+++. |..+|+|++.|+.|.+|+.+ |+.+..
T Consensus 212 l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~ 291 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE 291 (1049)
T ss_pred eeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeee
Confidence 5666665 477777654 7999998 36788999999999999965 55799999999999999998 788999
Q ss_pred ccccccCEEEEEe---CCCEEEEEcCCCCeeeeecCCCC
Q 003217 494 WVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 494 l~gH~~~V~sla~---dg~~l~S~S~DgtIrlWdl~s~~ 529 (838)
+..-.+++..+.+ ++..++.++-||.|-|..+...+
T Consensus 292 ~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 292 LPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9888899999986 55678889999999999987643
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-11 Score=135.47 Aligned_cols=315 Identities=15% Similarity=0.149 Sum_probs=182.3
Q ss_pred EEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEECC
Q 003217 145 LWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG---VVWSGHRDGRIMCWKMN 221 (838)
Q Consensus 145 l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~---~LaSGs~DGtIrvWd~~ 221 (838)
+.-|....|-+||-.+.... ....+| .++|.|+.+=|..+ .++||+.||.|++|.+.
T Consensus 28 vafGa~~~Iav~dp~k~~i~-------------------t~l~GH-~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~ 87 (764)
T KOG1063|consen 28 VAFGAGPAIAVADPEKILIV-------------------TTLDGH-VARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLR 87 (764)
T ss_pred EEecCCceEEEeCcccceeE-------------------EeccCC-ccceEEEEEcccccccceEEEccCCCcEEEEEEe
Confidence 33377889999997653111 011233 88999999998877 79999999999999998
Q ss_pred CCccCCCCCcceeEEeccccccEEEEEEecCCCEEEe-eCCCcEEEEECCCcc--e--eee----------c--CC-Cce
Q 003217 222 ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSG-SEGGGIKIWPWEAIE--K--ALS----------L--KP-EER 283 (838)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~Sg-S~DgtIrvWd~~~~~--~--~~~----------~--~~-~~~ 283 (838)
.. .+..+.++++|...+.++. ..-.+.++ +.|+++.+|+.+..+ . .+. + .. ...
T Consensus 88 ~~------~~~~i~~~~g~~~~~~cv~--a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~ 159 (764)
T KOG1063|consen 88 DE------YLIKIYTIQGHCKECVCVV--ARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKT 159 (764)
T ss_pred eh------heEEEEeecCcceeEEEEE--eeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCc
Confidence 42 2356778889877766553 33233333 789999999984322 0 011 1 11 111
Q ss_pred eeeEEEEeeceeecccceeccce---eee--ecCCeEEEEEcCC---CCEEEEeC-CCcEEEEeccCccEEEEEecCCce
Q 003217 284 HTAALIVERSYIDLRSHLSVNGF---SSI--LTSDIKNLLSDHS---RAKVWSAG-FLSFALWDARTRELLKVFNIDGQI 354 (838)
Q Consensus 284 ~~~~~~~~~s~~~l~~~~~~~~~---~~~--~s~~v~~las~~~---~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~ 354 (838)
...+.....-.+.+.+.. ...+ +.+ +..-++.+++... ...|+|++ |..||||.+.-+..... .
T Consensus 160 ~lla~Ggs~~~v~~~s~~-~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~------~ 232 (764)
T KOG1063|consen 160 FLLACGGSKFVVDLYSSS-ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDS------N 232 (764)
T ss_pred EEEEecCcceEEEEeccC-CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccc------c
Confidence 111111111122222111 0000 000 1233555555432 33666666 67899998753221110 0
Q ss_pred EEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC-cE
Q 003217 355 ENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MI 433 (838)
Q Consensus 355 ~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg-~l 433 (838)
+ .+.. .....+... |. ...+ -.+++....-+.+|...|.++.+.|++ .|
T Consensus 233 ~--------------~e~~----~t~~~~~~~----f~------~l~~--i~~~is~eall~GHeDWV~sv~W~p~~~~L 282 (764)
T KOG1063|consen 233 E--------------REDS----LTTLSNLPV----FM------ILEE--IQYRISFEALLMGHEDWVYSVWWHPEGLDL 282 (764)
T ss_pred c--------------cccc----cccccCCce----ee------eeee--EEEEEehhhhhcCcccceEEEEEccchhhh
Confidence 0 0000 000000000 00 0000 002222222344677788888899999 59
Q ss_pred EEEECCCeEEEEcCC---CC-----eeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCC--C--ccccccccccc
Q 003217 434 WTGGANGLLLQWDPN---GN-----RLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE--G--NLLGGWVAHSS 499 (838)
Q Consensus 434 ~Sgs~DgtIrlWD~~---g~-----~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~--g--~~i~~l~gH~~ 499 (838)
+|+|+|.++.+|... |- ++..+.|....-... ++++..|++-+..|..++|-.+ + .+.....||.+
T Consensus 283 LSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~ 362 (764)
T KOG1063|consen 283 LSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVD 362 (764)
T ss_pred eecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccc
Confidence 999999999999872 32 333333333333332 4567788888889999999843 2 35667789999
Q ss_pred CEEEEEeC--CCEEEEEcCCCCeeeee
Q 003217 500 PVIKMAVG--AGYIFTLANHGGIRGWN 524 (838)
Q Consensus 500 ~V~sla~d--g~~l~S~S~DgtIrlWd 524 (838)
.|..|+++ |.+++|+|.|.|-|++-
T Consensus 363 ~V~dv~W~psGeflLsvs~DQTTRlFa 389 (764)
T KOG1063|consen 363 GVKDVDWDPSGEFLLSVSLDQTTRLFA 389 (764)
T ss_pred cceeeeecCCCCEEEEeccccceeeec
Confidence 99999976 88999999999999964
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-11 Score=124.29 Aligned_cols=245 Identities=17% Similarity=0.188 Sum_probs=164.1
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCC-------cEEEEECCCCcc-CCCCCcceeEEec-cccccEEEEEEecCCC-EEEee
Q 003217 191 VSSVMCMVGDEAS-GVVWSGHRDG-------RIMCWKMNARLL-DSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGS 259 (838)
Q Consensus 191 ~~~V~~la~s~dg-~~LaSGs~DG-------tIrvWd~~~g~~-~~~~~~~~~~~l~-gH~~~V~slafs~dG~-L~SgS 259 (838)
.+.|..++-+|.. ++|+|...|. .+-+|.+..... .....++++..|. .|-+.|.+|.|.|++. |++-
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm- 141 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM- 141 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe-
Confidence 6789999999854 6666665532 577999876421 1112344444453 4567999999999997 5543
Q ss_pred CCCcEEEEECCCcceeee-cC-CCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEE
Q 003217 260 EGGGIKIWPWEAIEKALS-LK-PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALW 337 (838)
Q Consensus 260 ~DgtIrvWd~~~~~~~~~-~~-~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lW 337 (838)
.|..|-+|+++...+... +. .+...+. +....|..+ | .+++..|++.++.++..|
T Consensus 142 ~dn~i~l~~l~ess~~vaev~ss~s~e~~-------------~~ftsg~Ws-p---------HHdgnqv~tt~d~tl~~~ 198 (370)
T KOG1007|consen 142 DDNNIVLWSLDESSKIVAEVLSSESAEMR-------------HSFTSGAWS-P---------HHDGNQVATTSDSTLQFW 198 (370)
T ss_pred ccCceEEEEcccCcchheeeccccccccc-------------ceecccccC-C---------CCccceEEEeCCCcEEEE
Confidence 489999999976443111 00 0000000 000111110 1 246677888888999999
Q ss_pred eccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCcccc
Q 003217 338 DARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGD 417 (838)
Q Consensus 338 D~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~ 417 (838)
|++|-.+....+ ..
T Consensus 199 D~RT~~~~~sI~------------------------------------------------------------------dA 212 (370)
T KOG1007|consen 199 DLRTMKKNNSIE------------------------------------------------------------------DA 212 (370)
T ss_pred Eccchhhhcchh------------------------------------------------------------------hh
Confidence 998754321110 01
Q ss_pred CCCceEEEEEcCCCc--EEEEECCCeEEEEcC--CCCeeeEeecCCccEEEEEEc---CCEEEEEeeCCeEEEEeCC--C
Q 003217 418 DNRRTEALTTSIDGM--IWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE--G 488 (838)
Q Consensus 418 ~~~~v~ala~S~dg~--l~Sgs~DgtIrlWD~--~g~~l~tl~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~--g 488 (838)
|...|..+-|.|+.+ |++|+.||.||+||. +...++++.+|+.+|++|-+. .+.|.+|++|..|.||... .
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence 233445566667665 789999999999999 357899999999999999764 5689999999999999621 0
Q ss_pred ----------------------------cccccccccccCEEEEEe---CCCEEEEEcCCCCeeeeec
Q 003217 489 ----------------------------NLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 489 ----------------------------~~i~~l~gH~~~V~sla~---dg~~l~S~S~DgtIrlWdl 525 (838)
.++.++.-|.+.|+++++ |+=.++|.|.||.+.|=.+
T Consensus 293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 135578889999999986 6667889999999877443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.4e-12 Score=140.40 Aligned_cols=262 Identities=13% Similarity=0.120 Sum_probs=157.0
Q ss_pred ceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeee
Q 003217 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (838)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~ 310 (838)
.+...++||++.|.+|..+|.|. |+|||.||+||||.+.|+.|..+...
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~------------------------------ 440 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF------------------------------ 440 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee------------------------------
Confidence 33456799999999999999998 89999999999999988766443321
Q ss_pred cCCeEEEEEcCCCC--EEEEeCCCcEEEEeccCccEEEEEecCCceEEee--ecccCccccc--------ccceeeEEEe
Q 003217 311 TSDIKNLLSDHSRA--KVWSAGFLSFALWDARTRELLKVFNIDGQIENRV--DMSLLPDFAM--------EDEFKTKIVT 378 (838)
Q Consensus 311 s~~v~~las~~~~~--~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~--~~s~~~~~~~--------~~~~~~~~~s 378 (838)
.+.|++++..+... .|+.+....+.|-+..=|..+..-....-....+ .....+...+ +..+++.+
T Consensus 441 d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I-- 518 (733)
T KOG0650|consen 441 DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI-- 518 (733)
T ss_pred cceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE--
Confidence 12355555554332 2333333334444433332111100000000000 0000000011 00111111
Q ss_pred cCCCCcceeeeeEeecCcceeeecCC-cE--EEEec--c----CccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-
Q 003217 379 SSKKDKAQSSFGFFQRSRNAIMGAAD-AV--RRVAA--K----GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP- 447 (838)
Q Consensus 379 ~~~~~~~~~s~~~~~~~~~~~~g~~~-~v--~~v~~--~----g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~- 447 (838)
+..+.+..+....++....+-..+ +. ..+.. + -.|....+.|.++.|.|-.- ++.++ ...||+||+
T Consensus 519 --~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~ 595 (733)
T KOG0650|consen 519 --KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLS 595 (733)
T ss_pred --ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehh
Confidence 112333344444444433322221 11 11111 1 12333445677888887654 66655 556999999
Q ss_pred CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC--CcccccccccccCEEEEEeCCCE--EEEEcCCCCee
Q 003217 448 NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAVGAGY--IFTLANHGGIR 521 (838)
Q Consensus 448 ~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~dg~~--l~S~S~DgtIr 521 (838)
.++.++.+.....+|.+++. .|..|+.|+.|+.+..+|+. .+..+++..|...|.+|++++++ ++|||.|+++.
T Consensus 596 kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~ 675 (733)
T KOG0650|consen 596 KQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVI 675 (733)
T ss_pred HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEE
Confidence 77777777777778888765 58899999999999999976 67999999999999999999885 77999999999
Q ss_pred eeecCCC
Q 003217 522 GWNVTSP 528 (838)
Q Consensus 522 lWdl~s~ 528 (838)
|+--..+
T Consensus 676 Vfhg~VY 682 (733)
T KOG0650|consen 676 VFHGMVY 682 (733)
T ss_pred EEeeeee
Confidence 9874444
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-12 Score=147.38 Aligned_cols=216 Identities=15% Similarity=0.241 Sum_probs=150.5
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLD 226 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~ 226 (838)
++.+.|-+||+.....- ....-|.+ | ...|.|+.|++- -.+|.|||.||+||+||+...
T Consensus 107 s~nG~i~vWdlnk~~rn--------------k~l~~f~E--H-~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~--- 166 (839)
T KOG0269|consen 107 STNGVISVWDLNKSIRN--------------KLLTVFNE--H-ERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK--- 166 (839)
T ss_pred cCCCcEEEEecCccccc--------------hhhhHhhh--h-ccceeeeeeccCCccEEEecCCCceEEEEeeecc---
Confidence 56889999999652110 00112444 2 678999999864 489999999999999999875
Q ss_pred CCCCcceeEEeccccccEEEEEEecC-CC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceecc
Q 003217 227 SDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (838)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 304 (838)
+...++.+-..+|..|.|+|- +. ++++.+.|.+++||+..-... ...+.+|
T Consensus 167 -----~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~------------------~~k~~AH---- 219 (839)
T KOG0269|consen 167 -----KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC------------------EKKLTAH---- 219 (839)
T ss_pred -----cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH------------------HHHhhcc----
Confidence 456677888899999999984 33 789999999999999542110 1112233
Q ss_pred ceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCC
Q 003217 305 GFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (838)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~ 383 (838)
.+.|.|+--.|.+..|++|+ |++|+|||..+++.-.....+
T Consensus 220 ------~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-------------------------------- 261 (839)
T KOG0269|consen 220 ------NGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-------------------------------- 261 (839)
T ss_pred ------cCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe--------------------------------
Confidence 56788888888888899888 789999999865431111000
Q ss_pred cceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC--cEEEEE--CCCeEEEEcCCC--CeeeEeec
Q 003217 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG--MIWTGG--ANGLLLQWDPNG--NRLQDFQY 457 (838)
Q Consensus 384 ~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg--~l~Sgs--~DgtIrlWD~~g--~~l~tl~~ 457 (838)
....|..|.+-|+- .|++++ .|-.|.+||+.- -.-.+|..
T Consensus 262 ----------------------------------Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e 307 (839)
T KOG0269|consen 262 ----------------------------------TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE 307 (839)
T ss_pred ----------------------------------ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec
Confidence 00111122333332 255555 377899999954 45688999
Q ss_pred CCccEEEEEEcC---CEEEEEeeCCeEE
Q 003217 458 LPFAVQCLCTFG---SQIWVGYMNGIVQ 482 (838)
Q Consensus 458 H~~~V~sls~dG---~~LasGs~DgtIr 482 (838)
|...|+.++.++ ..+|+++.||+|.
T Consensus 308 H~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 308 HTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred cCccccceeccCCCceeeEeecCccHHH
Confidence 999999998864 3899999999875
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-11 Score=135.11 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=90.7
Q ss_pred ceEEEEEcC--CCcEEEEECCCeEEEEcCC--C------CeeeEeecCCccEEEEEEc---CCEEEEEeeCCeEEEEeCC
Q 003217 421 RTEALTTSI--DGMIWTGGANGLLLQWDPN--G------NRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 421 ~v~ala~S~--dg~l~Sgs~DgtIrlWD~~--g------~~l~tl~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~ 487 (838)
.|..+.+.| +.+|+.+++||.|++|.++ | ..-..+++|...|+++-+. ...|++++.|-||+|||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 466677766 3469999999999999982 3 2346678999999999764 4689999999999999997
Q ss_pred -CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 488 -GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 488 -g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
++....|.||++.|.++++ ||+.++|.+.||+||+++-++
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 7788899999999999995 899999999999999998654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-10 Score=127.68 Aligned_cols=236 Identities=22% Similarity=0.358 Sum_probs=170.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccc-cEEEEEE-ecCCC-E-EE-eeCCCcEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG-PVLSLCI-SSYGD-L-WS-GSEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~-~V~slaf-s~dG~-L-~S-gS~DgtIr 265 (838)
...+.++.+++.+..+..++.|+.+.+|+...+. .....+.++.. .+..+.+ ++++. + .. ++.|+.++
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 6789999999999999999999999999998851 25666777544 7888888 77776 4 34 44599999
Q ss_pred EEECCC-cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCc
Q 003217 266 IWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTR 342 (838)
Q Consensus 266 vWd~~~-~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg 342 (838)
+|+... ......+. .| ...+..+.+.+.+..+++++ +..+++|++.++
T Consensus 138 ~~~~~~~~~~~~~~~-------------------~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (466)
T COG2319 138 LWDLSTPGKLIRTLE-------------------GH----------SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG 188 (466)
T ss_pred EEEecCCCeEEEEEe-------------------cC----------cccEEEEEECCCCCEEEecCCCCCceEEEEcCCC
Confidence 999865 21111111 11 33455667777666555554 678999999875
Q ss_pred cEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCce
Q 003217 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (838)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (838)
..+..+.. |...+
T Consensus 189 ~~~~~~~~-------------------------------------------------------------------~~~~v 201 (466)
T COG2319 189 KPLSTLAG-------------------------------------------------------------------HTDPV 201 (466)
T ss_pred ceEEeecc-------------------------------------------------------------------CCCce
Confidence 55444322 22334
Q ss_pred EEEEEcCCCc-EE-EEECCCeEEEEcC-CCCeee-EeecCCcc-EEEEEEcCCEEEEEeeCCeEEEEeCCC-c-cccccc
Q 003217 423 EALTTSIDGM-IW-TGGANGLLLQWDP-NGNRLQ-DFQYLPFA-VQCLCTFGSQIWVGYMNGIVQVLDLEG-N-LLGGWV 495 (838)
Q Consensus 423 ~ala~S~dg~-l~-Sgs~DgtIrlWD~-~g~~l~-tl~~H~~~-V~sls~dG~~LasGs~DgtIrlWD~~g-~-~i~~l~ 495 (838)
..++++|++. ++ +++.|++|++||. .+.++. .+.+|... +.++.+++..+++++.|+.+++||... . .+..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 281 (466)
T COG2319 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS 281 (466)
T ss_pred EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe
Confidence 4566667774 44 4488999999998 588888 68888887 555667788888999999999999873 2 244447
Q ss_pred ccccCEEEEEeC--CCEEEEEcCCCCeeeeecCCCC
Q 003217 496 AHSSPVIKMAVG--AGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 496 gH~~~V~sla~d--g~~l~S~S~DgtIrlWdl~s~~ 529 (838)
+|...|.++.+. +..+++++.|+.+++|++....
T Consensus 282 ~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 899999998864 5788889999999999876543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-10 Score=123.24 Aligned_cols=266 Identities=15% Similarity=0.184 Sum_probs=163.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc-cccEEEEEEecCCCEEEeeCCCcEEEEECC
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH-~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (838)
..|....|.|.+..|..-.-.|.+-.|+.+++. -++....|++| +..|.||+|.++|+.+||..+|+|-||+..
T Consensus 201 e~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~-----l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 201 EVVFLATFHPTDPNLIITCGKGHLYFWTLRGGS-----LVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKG 275 (626)
T ss_pred ceEEEEEeccCCCcEEEEeCCceEEEEEccCCc-----eEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCC
Confidence 367888999977555555556889999998862 23344456666 578999999999999999999999999985
Q ss_pred CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEe
Q 003217 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (838)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~ 349 (838)
+..-.... +.+ .+.|.+|+.-.+| ++.||+ |..|.+||- .-+.++..+
T Consensus 276 ~~~~~k~~---------------------~aH--------~ggv~~L~~lr~G-tllSGgKDRki~~Wd~-~y~k~r~~e 324 (626)
T KOG2106|consen 276 TNRISKQV---------------------HAH--------DGGVFSLCMLRDG-TLLSGGKDRKIILWDD-NYRKLRETE 324 (626)
T ss_pred CceEEeEe---------------------eec--------CCceEEEEEecCc-cEeecCccceEEeccc-ccccccccc
Confidence 42211110 111 3345556655444 445555 678999992 221111111
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCc-EEEEeccC----ccccCCCceEE
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAKG----GFGDDNRRTEA 424 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~-v~~v~~~g----~~~~~~~~v~a 424 (838)
...+. . .+| .+... ...+++|+... +..-.... ...+|......
T Consensus 325 lPe~~-----------G----~iR--tv~e~--------------~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwg 373 (626)
T KOG2106|consen 325 LPEQF-----------G----PIR--TVAEG--------------KGDILVGTTRNFILQGTLENGFTLTVQGHGDELWG 373 (626)
T ss_pred Cchhc-----------C----Cee--EEecC--------------CCcEEEeeccceEEEeeecCCceEEEEecccceee
Confidence 11110 0 000 01111 01122332211 11111111 12245556667
Q ss_pred EEEcCCC-cEEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCCcccccccccccCE
Q 003217 425 LTTSIDG-MIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPV 501 (838)
Q Consensus 425 la~S~dg-~l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V 501 (838)
++..|+. ++++++.|+++++|+ +-+.+-+.. -.+++.|+.+ .| .||.|+..|..-|.|.+.+.+.+..--+.++
T Consensus 374 la~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~l 450 (626)
T KOG2106|consen 374 LATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQL 450 (626)
T ss_pred EEcCCChhheeeccCcceEEEcc-CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCce
Confidence 7877764 589999999999999 333322211 1356667765 46 9999999999999999865433333236778
Q ss_pred EEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 502 IKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 502 ~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
..+. ++|.+++-||.|+.|.++.+..
T Consensus 451 s~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 451 SVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred EEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 7776 6899999999999999998754
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-11 Score=131.61 Aligned_cols=272 Identities=15% Similarity=0.138 Sum_probs=166.6
Q ss_pred CCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC--CEEEeeCCCcEEE
Q 003217 191 VSSVMCMVGDEAS--GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKI 266 (838)
Q Consensus 191 ~~~V~~la~s~dg--~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG--~L~SgS~DgtIrv 266 (838)
.+.|+|++|.|.- ++|++|.+-|.|-+||+.+.. ........+..|.++|++|.|+|.. ++++.|.|||||+
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~----~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE----KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCC----CccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 6789999999954 699999999999999996421 1223456688999999999999976 4899999999999
Q ss_pred EECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccE-
Q 003217 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL- 344 (838)
Q Consensus 267 Wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~- 344 (838)
=|+++......+..... ... ...+-+......|..+. .+.+.+||++++.-
T Consensus 262 ~D~~~~i~e~v~s~~~d-------------------~~~--------fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTD-------------------NIW--------FSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred eeecchhhHHHhhcCcc-------------------cee--------eeeccccCCCccEEEeecccceEEEEeecCCcc
Confidence 99976332111111000 000 01111222333444444 46788999988653
Q ss_pred EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec------cCc----
Q 003217 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA------KGG---- 414 (838)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~------~g~---- 414 (838)
...+..|.+-++.+++.+.... ..++++.|...++|. +..
T Consensus 315 ~~~~~lh~kKI~sv~~NP~~p~------------------------------~laT~s~D~T~kIWD~R~l~~K~sp~ls 364 (498)
T KOG4328|consen 315 YENLRLHKKKITSVALNPVCPW------------------------------FLATASLDQTAKIWDLRQLRGKASPFLS 364 (498)
T ss_pred chhhhhhhcccceeecCCCCch------------------------------heeecccCcceeeeehhhhcCCCCccee
Confidence 2222333333334444432211 112233333333332 111
Q ss_pred cccCCCceEEEEEcCCC-cEEEEECCCeEEEEcCC--C---CeeeEeecCCc----cEEEE----EEcCCEEEEEeeCCe
Q 003217 415 FGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDPN--G---NRLQDFQYLPF----AVQCL----CTFGSQIWVGYMNGI 480 (838)
Q Consensus 415 ~~~~~~~v~ala~S~dg-~l~Sgs~DgtIrlWD~~--g---~~l~tl~~H~~----~V~sl----s~dG~~LasGs~Dgt 480 (838)
...|...|.+..|||.| +|++.+.|..|||||.. + ..+.++ .|++ +++-+ .++-.+|++|-.-..
T Consensus 365 t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~ 443 (498)
T KOG4328|consen 365 TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRP 443 (498)
T ss_pred cccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee-eccCcccccccchhheeCCCccEEEEeccCcc
Confidence 23578889999999965 69999999999999983 2 222333 3432 33333 235669999999889
Q ss_pred EEEEeCCC-ccccccccccc-CEEEEE-eCC--CEEEEEc-CCCCeeeee
Q 003217 481 VQVLDLEG-NLLGGWVAHSS-PVIKMA-VGA--GYIFTLA-NHGGIRGWN 524 (838)
Q Consensus 481 IrlWD~~g-~~i~~l~gH~~-~V~sla-~dg--~~l~S~S-~DgtIrlWd 524 (838)
|-++|.++ +.+..+..... .|.++- +++ ..+++|+ ..|.|.+|.
T Consensus 444 IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 444 IDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred eeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 99999985 55666655554 565553 444 3355554 445566654
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-11 Score=126.20 Aligned_cols=253 Identities=14% Similarity=0.180 Sum_probs=168.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccC----CCCCcceeEEecc-ccccEEEEEEe-------cCCCE-EEeeC
Q 003217 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD----SDDGFGEVLSWQA-HRGPVLSLCIS-------SYGDL-WSGSE 260 (838)
Q Consensus 194 V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~----~~~~~~~~~~l~g-H~~~V~slafs-------~dG~L-~SgS~ 260 (838)
...+.++|||..|.+-+.|...++|++...... ....+....+++= -...|..-++= |+..| ++.|.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 345789999999999999999999998643110 0011111111111 12345555442 44455 58889
Q ss_pred CCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEec-
Q 003217 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA- 339 (838)
Q Consensus 261 DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~- 339 (838)
|.-|++||.-+++...++..-. +... -....+|+++++|..|++|-..+|+++|+
T Consensus 132 ~~PIh~wdaftG~lraSy~~yd-------------------h~de-----~taAhsL~Fs~DGeqlfaGykrcirvFdt~ 187 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYD-------------------HQDE-----YTAAHSLQFSPDGEQLFAGYKRCIRVFDTS 187 (406)
T ss_pred cCceeeeeccccccccchhhhh-------------------hHHh-----hhhheeEEecCCCCeEeecccceEEEeecc
Confidence 9999999997765433332111 1111 11235788999999999988789999998
Q ss_pred cCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCC
Q 003217 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (838)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (838)
++|....+.. ...+.+ .+..
T Consensus 188 RpGr~c~vy~-----------------------------t~~~~k-------------------------------~gq~ 207 (406)
T KOG2919|consen 188 RPGRDCPVYT-----------------------------TVTKGK-------------------------------FGQK 207 (406)
T ss_pred CCCCCCcchh-----------------------------hhhccc-------------------------------cccc
Confidence 5554321110 000000 0112
Q ss_pred CceEEEEEcCCC--cEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEE--EEcCCEEEEEee-CCeEEEEeCC--Cccc
Q 003217 420 RRTEALTTSIDG--MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYM-NGIVQVLDLE--GNLL 491 (838)
Q Consensus 420 ~~v~ala~S~dg--~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~-DgtIrlWD~~--g~~i 491 (838)
..+.+++++|-. .++.|+--.++-|+.- .+..++.+-+|.+.|+-+ ..||.+|.+|+. |-.|-+||+. +..+
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 234566777743 4788887777877776 567889999999999987 459999999995 8899999987 5678
Q ss_pred ccccccccCE-----EEEEeCCCEEEEEcCCCCeeeeecCCCCC
Q 003217 492 GGWVAHSSPV-----IKMAVGAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 492 ~~l~gH~~~V-----~sla~dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
-.|..|.+.- ..+.++++.|+||++||.|++||+..++.
T Consensus 288 ~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 288 YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 8898887732 23456789999999999999999887543
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-12 Score=149.44 Aligned_cols=267 Identities=18% Similarity=0.195 Sum_probs=166.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|+|++||..|.+|++|+.|..+|||.++++ .+..+..||.+.|+.++.+.+.. ++++|.|..||||.+
T Consensus 190 ~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~--------~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 190 RNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA--------RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred hhheeeeeeccccceEeecCccceeeeeeccch--------hhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 789999999999999999999999999999997 67788999999999999998776 689999999999998
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEe
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~ 349 (838)
.++...- .+++| ++.|+.+++++-. .++.++|+++||.+ -..+. +.
T Consensus 262 ~~~~pvs-------------------vLrgh----------tgavtaiafsP~~---sss~dgt~~~wd~r-~~~~~-y~ 307 (1113)
T KOG0644|consen 262 PDGAPVS-------------------VLRGH----------TGAVTAIAFSPRA---SSSDDGTCRIWDAR-LEPRI-YV 307 (1113)
T ss_pred CCCchHH-------------------HHhcc----------ccceeeeccCccc---cCCCCCceEecccc-ccccc-cC
Confidence 6643211 13344 5667778887633 33446899999987 11111 11
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~ 429 (838)
+... .+.. . . ..-++-|-.++....+|+.++..+.+.-..+..+...+.-+..+.
T Consensus 308 prp~-----~~~~--~-~-----------------~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ss 362 (1113)
T KOG0644|consen 308 PRPL-----KFTE--K-D-----------------LVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSS 362 (1113)
T ss_pred CCCC-----Cccc--c-c-----------------ceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccc
Confidence 0000 0000 0 0 000000111111112232222211111000111111111122222
Q ss_pred C--CcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE---cCCEEEEEeeCCeEEEEeCC-Ccccc-cccccccCE
Q 003217 430 D--GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLG-GWVAHSSPV 501 (838)
Q Consensus 430 d--g~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i~-~l~gH~~~V 501 (838)
| ...+++-.+.-+++|++ +|..++.+.+|...+..+-+ +.+...+++.||.+-|||.. |-.++ -+.+|...|
T Consensus 363 d~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~ 442 (1113)
T KOG0644|consen 363 DLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLV 442 (1113)
T ss_pred cccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceee
Confidence 2 12345555677899999 89999999999998887754 34466688899999999975 65433 346787777
Q ss_pred EEE-EeCCCEEEEEcCCCCeeeee
Q 003217 502 IKM-AVGAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 502 ~sl-a~dg~~l~S~S~DgtIrlWd 524 (838)
.+- ..||+.++-....|.+.+..
T Consensus 443 d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 443 DGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred ccccCCCCceEecCCCCCceEEec
Confidence 653 35777666555556666655
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.4e-10 Score=121.04 Aligned_cols=272 Identities=22% Similarity=0.365 Sum_probs=178.1
Q ss_pred eeEEEEecCC--EEEE-ecCCCEEEEeCCCCc-cccccccccccCCCCCCCCCCceeeecCCCCeEEEEE-cCCCC-EEE
Q 003217 134 FLRTIVCTEE--QLWA-GGENGLRVWNLKELY-DESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVG-DEASG-VVW 207 (838)
Q Consensus 134 ~~~~l~~~~~--~l~~-g~d~~vrvWd~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~-s~dg~-~La 207 (838)
.+..+..... .+.. +.|+.+.+|+..... .... +.. .+ ...+..+.+ ++++. .+.
T Consensus 67 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-----------------~~~-~~-~~~~~~~~~~~~~~~~~~~ 127 (466)
T COG2319 67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKS-----------------LEG-LH-DSSVSKLALSSPDGNSILL 127 (466)
T ss_pred eEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEE-----------------Eec-cC-CCceeeEEEECCCcceEEe
Confidence 4445554433 3333 459999999986543 1110 000 00 114555555 77777 555
Q ss_pred EEeC-CCcEEEEECCC-CccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeC-CCcEEEEECCCcceeeecCCCce
Q 003217 208 SGHR-DGRIMCWKMNA-RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE-GGGIKIWPWEAIEKALSLKPEER 283 (838)
Q Consensus 208 SGs~-DGtIrvWd~~~-g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~-DgtIrvWd~~~~~~~~~~~~~~~ 283 (838)
..+. |+.+++|+... . .....+.+|...|.+++|+|++. +++++. |+++++|++........+..
T Consensus 128 ~~~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 196 (466)
T COG2319 128 ASSSLDGTVKLWDLSTPG--------KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG--- 196 (466)
T ss_pred ccCCCCccEEEEEecCCC--------eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc---
Confidence 5444 99999999987 3 56777899999999999999997 677775 99999999965222111110
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEE-eCCCcEEEEeccCccEEE-EEecCCceEEeeec
Q 003217 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWS-AGFLSFALWDARTRELLK-VFNIDGQIENRVDM 360 (838)
Q Consensus 284 ~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s-~s~~tI~lWD~~tg~~l~-~l~~~~~~~~~~~~ 360 (838)
+...+..++..+.+. .+.+ +.+++|++||..++.++. .+..+.
T Consensus 197 --------------------------~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~-------- 242 (466)
T COG2319 197 --------------------------HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS-------- 242 (466)
T ss_pred --------------------------CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCC--------
Confidence 134556666665555 4445 346789999887666544 222111
Q ss_pred ccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC-cEEEEECC
Q 003217 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGAN 439 (838)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg-~l~Sgs~D 439 (838)
..+ ...+++++ .+++++.|
T Consensus 243 -----------------------------------------------------------~~~-~~~~~~~~~~~~~~~~d 262 (466)
T COG2319 243 -----------------------------------------------------------DSV-VSSFSPDGSLLASGSSD 262 (466)
T ss_pred -----------------------------------------------------------cce-eEeECCCCCEEEEecCC
Confidence 000 00356666 46789999
Q ss_pred CeEEEEcCC-CCe-eeEeecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCCC-ccccccc--ccccCEEEEEeC--CCE
Q 003217 440 GLLLQWDPN-GNR-LQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEG-NLLGGWV--AHSSPVIKMAVG--AGY 510 (838)
Q Consensus 440 gtIrlWD~~-g~~-l~tl~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~g-~~i~~l~--gH~~~V~sla~d--g~~ 510 (838)
+.+++||.. ... +..+.+|...|.++.+. +..+++++.|+.+++||... ....... +|...|..+.+. +..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (466)
T COG2319 263 GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSL 342 (466)
T ss_pred CcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCE
Confidence 999999994 333 55557889999988664 57888888899999999873 4444444 888888888762 135
Q ss_pred EEEE-cCCCCeeeeecCCCC
Q 003217 511 IFTL-ANHGGIRGWNVTSPG 529 (838)
Q Consensus 511 l~S~-S~DgtIrlWdl~s~~ 529 (838)
++.+ ..|+.+++|++....
T Consensus 343 ~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 343 LVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEeecCCCcEEeeecCCCc
Confidence 5554 788999999976543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-11 Score=132.93 Aligned_cols=214 Identities=16% Similarity=0.208 Sum_probs=148.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
.-.||++.....++.+|+..++|++||+... ...+.+++|+..|++|.+.-... |+++|..|-|-|-.+.+
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k--------l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t 152 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAK--------LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT 152 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHH--------HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc
Confidence 4567777667789999999999999999863 33456899999999999987655 99999999999999987
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeCC-CcEEEEeccCccEEEEEe
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAGF-LSFALWDARTRELLKVFN 349 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s~-~tI~lWD~~tg~~l~~l~ 349 (838)
+.+.-.+...... .++.|-.++... .+.+++| ++|.|||+.....+..+.
T Consensus 153 ~~~tt~f~~~sgq----------------------------svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~ 204 (673)
T KOG4378|consen 153 KQKTTTFTIDSGQ----------------------------SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS 204 (673)
T ss_pred CccccceecCCCC----------------------------eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh
Confidence 6554433221111 133444444333 3445555 678999986433321110
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~ 429 (838)
..|......+.|+|
T Consensus 205 ------------------------------------------------------------------~~HsAP~~gicfsp 218 (673)
T KOG4378|consen 205 ------------------------------------------------------------------EAHSAPCRGICFSP 218 (673)
T ss_pred ------------------------------------------------------------------hhccCCcCcceecC
Confidence 01111122345655
Q ss_pred CC--cEEEEECCCeEEEEcCC-CCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCC--cccccccccccCEE
Q 003217 430 DG--MIWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG--NLLGGWVAHSSPVI 502 (838)
Q Consensus 430 dg--~l~Sgs~DgtIrlWD~~-g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g--~~i~~l~gH~~~V~ 502 (838)
-. .+++.+.|..|.+||.. .+....+.. ..+..+|++ +|.+|++|+..|.|.-||+.+ .++.++.+|...|.
T Consensus 219 sne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt 297 (673)
T KOG4378|consen 219 SNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVT 297 (673)
T ss_pred CccceEEEecccceEEEeecccccccceeee-cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccccee
Confidence 43 36899999999999994 444444443 445556654 799999999999999999985 47999999999999
Q ss_pred EEEeCCC
Q 003217 503 KMAVGAG 509 (838)
Q Consensus 503 sla~dg~ 509 (838)
+|++...
T Consensus 298 ~vafq~s 304 (673)
T KOG4378|consen 298 RVAFQPS 304 (673)
T ss_pred EEEeeec
Confidence 9997543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.4e-11 Score=131.25 Aligned_cols=240 Identities=17% Similarity=0.239 Sum_probs=169.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd 268 (838)
.++|.||.|.|...+|.+|+.||++|++.+++.. ++ .++++.=-.-||.+.+|.|+|+ +++++.-...-.||
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~----N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV----NP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCcc----Ch--hheeeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence 5689999999999999999999999999998742 11 2233222367999999999997 68999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
+++.+-. .+.+. .++ ....+.....++++..|+..+ .+-|.|.-+.|++++.+
T Consensus 287 le~ak~~-k~~~~----------------~g~---------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s 340 (514)
T KOG2055|consen 287 LETAKVT-KLKPP----------------YGV---------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITS 340 (514)
T ss_pred ccccccc-cccCC----------------CCc---------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhe
Confidence 9774321 11110 011 011234455566777666655 45688888888887766
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
+...+ .|..+.|
T Consensus 341 ~KieG--------------------------------------------------------------------~v~~~~f 352 (514)
T KOG2055|consen 341 FKIEG--------------------------------------------------------------------VVSDFTF 352 (514)
T ss_pred eeecc--------------------------------------------------------------------EEeeEEE
Confidence 64322 1334566
Q ss_pred cCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCc---cEEEEEEcCCEEEEEeeCCeEEEEeCC-----C--ccccccc
Q 003217 428 SIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF---AVQCLCTFGSQIWVGYMNGIVQVLDLE-----G--NLLGGWV 495 (838)
Q Consensus 428 S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~---~V~sls~dG~~LasGs~DgtIrlWD~~-----g--~~i~~l~ 495 (838)
+.||+ ||+.+.+|.|.+||+ ...|++.+....+ .-.|++.+|+++|+||..|.|.|||.+ + +++.++.
T Consensus 353 sSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 353 SSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred ecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence 67776 778888999999999 5689999874221 122556789999999999999999953 2 4677777
Q ss_pred ccccCEEEEEe--CCCEEE--EEcCCCCeeeeecCCCCC
Q 003217 496 AHSSPVIKMAV--GAGYIF--TLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 496 gH~~~V~sla~--dg~~l~--S~S~DgtIrlWdl~s~~~ 530 (838)
.-+..|.+|.+ |.+.|+ |-..+..+|+=.+.+.+.
T Consensus 433 NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV 471 (514)
T KOG2055|consen 433 NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV 471 (514)
T ss_pred hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceee
Confidence 77788999886 566665 444677888877655433
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=130.17 Aligned_cols=239 Identities=19% Similarity=0.295 Sum_probs=155.6
Q ss_pred CCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCcc--------CCCCCcceeEEeccccccEEEEEEec--CCCEEEe
Q 003217 191 VSSVMCMVGDEAS--GVVWSGHRDGRIMCWKMNARLL--------DSDDGFGEVLSWQAHRGPVLSLCISS--YGDLWSG 258 (838)
Q Consensus 191 ~~~V~~la~s~dg--~~LaSGs~DGtIrvWd~~~g~~--------~~~~~~~~~~~l~gH~~~V~slafs~--dG~L~Sg 258 (838)
.+.+.-+..++-| -+.+|=+..|.|.||++..-.. -....++++.++.+|.+.=++|.||| +|.|+||
T Consensus 151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG 230 (440)
T KOG0302|consen 151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG 230 (440)
T ss_pred ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence 4455566666544 5666677889999999864320 11245677889999999999999999 6779999
Q ss_pred eCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcEEE
Q 003217 259 SEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFAL 336 (838)
Q Consensus 259 S~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI~l 336 (838)
.--+.|++|...++. ..+.. .. +.+| +..|--|.-++ ....++|++ |++|+|
T Consensus 231 Dc~~~I~lw~~~~g~--W~vd~--~P------------f~gH----------~~SVEDLqWSptE~~vfaScS~DgsIrI 284 (440)
T KOG0302|consen 231 DCVKGIHLWEPSTGS--WKVDQ--RP------------FTGH----------TKSVEDLQWSPTEDGVFASCSCDGSIRI 284 (440)
T ss_pred ccccceEeeeeccCc--eeecC--cc------------cccc----------ccchhhhccCCccCceEEeeecCceEEE
Confidence 888999999986532 21110 00 0011 22233333333 234556666 789999
Q ss_pred EeccCccE---EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccC
Q 003217 337 WDARTREL---LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG 413 (838)
Q Consensus 337 WD~~tg~~---l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g 413 (838)
||++.+.. +.+ .
T Consensus 285 WDiRs~~~~~~~~~-k---------------------------------------------------------------- 299 (440)
T KOG0302|consen 285 WDIRSGPKKAAVST-K---------------------------------------------------------------- 299 (440)
T ss_pred EEecCCCccceeEe-e----------------------------------------------------------------
Confidence 99987632 111 1
Q ss_pred ccccCCCceEEEEEcCCC-cEEEEECCCeEEEEcCC----CCeeeEeecCCccEEEEEEc---CCEEEEEeeCCeEEEEe
Q 003217 414 GFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDPN----GNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 414 ~~~~~~~~v~ala~S~dg-~l~Sgs~DgtIrlWD~~----g~~l~tl~~H~~~V~sls~d---G~~LasGs~DgtIrlWD 485 (838)
.|...|+.+.++.+- .|+||+.||+++|||+. ++.+.+|+.|..+|+||... ...|++++.|..|.|||
T Consensus 300 ---Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 300 ---AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred ---ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 112223344444433 48999999999999983 57899999999999999764 56889999999999999
Q ss_pred CCC--c-------ccc--------cccccc--cCEEEEEeC---CCEEEEEcCCCCeeeee
Q 003217 486 LEG--N-------LLG--------GWVAHS--SPVIKMAVG---AGYIFTLANHGGIRGWN 524 (838)
Q Consensus 486 ~~g--~-------~i~--------~l~gH~--~~V~sla~d---g~~l~S~S~DgtIrlWd 524 (838)
+.- . -.. -|--|. ..|..|.++ +.+++|.+.|| +.||.
T Consensus 377 lsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 377 LSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred eeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 631 1 011 122343 245556654 55788988887 34443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.9e-11 Score=122.35 Aligned_cols=221 Identities=16% Similarity=0.192 Sum_probs=141.7
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc--ccc---cEEEEEEecCCCEEEeeCCCcEEEEECCC-cc
Q 003217 200 DEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA--HRG---PVLSLCISSYGDLWSGSEGGGIKIWPWEA-IE 273 (838)
Q Consensus 200 s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~g--H~~---~V~slafs~dG~L~SgS~DgtIrvWd~~~-~~ 273 (838)
.|+..++++.+.|.-|++||.-+| +...++.+ |.. +-.||+|+|||.-+-++...+||++|+.. +.
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG--------~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr 191 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTG--------KLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGR 191 (406)
T ss_pred CCccceeeeccccCceeeeecccc--------ccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCC
Confidence 367788999999999999999998 44444443 433 34689999999855566778999999843 22
Q ss_pred eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeCC-CcEEEEeccCccEEEEEecC
Q 003217 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAGF-LSFALWDARTRELLKVFNID 351 (838)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s~-~tI~lWD~~tg~~l~~l~~~ 351 (838)
.. .. ...+ .++.... .+-+.++++++-.. .++.+++ +.+-|+.-..+.++.++.
T Consensus 192 ~c-~v------y~t~--------~~~k~gq-------~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-- 247 (406)
T KOG2919|consen 192 DC-PV------YTTV--------TKGKFGQ-------KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-- 247 (406)
T ss_pred CC-cc------hhhh--------hcccccc-------cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec--
Confidence 11 00 0000 0000000 22244566655443 4444443 222222222222222221
Q ss_pred CceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC
Q 003217 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG 431 (838)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg 431 (838)
+|...|+.|.+-+||
T Consensus 248 -----------------------------------------------------------------gh~gGvThL~~~edG 262 (406)
T KOG2919|consen 248 -----------------------------------------------------------------GHGGGVTHLQWCEDG 262 (406)
T ss_pred -----------------------------------------------------------------ccCCCeeeEEeccCc
Confidence 333445566777777
Q ss_pred c-EEEEEC-CCeEEEEcC--CCCeeeEeecCCc----cEE-EEEEcCCEEEEEeeCCeEEEEeCC--CcccccccccccC
Q 003217 432 M-IWTGGA-NGLLLQWDP--NGNRLQDFQYLPF----AVQ-CLCTFGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSP 500 (838)
Q Consensus 432 ~-l~Sgs~-DgtIrlWD~--~g~~l~tl~~H~~----~V~-sls~dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~ 500 (838)
. +.||+. |-.|-+||+ .+..+-.+..|.. +|. .+.+.|++|++|+.||.|++||++ |+...++..|++.
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~ 342 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDT 342 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccc
Confidence 6 888873 557999999 3567777777765 333 346679999999999999999997 6788999999999
Q ss_pred EEEEEeCCC--EEEEEcCC
Q 003217 501 VIKMAVGAG--YIFTLANH 517 (838)
Q Consensus 501 V~sla~dg~--~l~S~S~D 517 (838)
|+.++.++- .++++|..
T Consensus 343 vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 343 VNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccceecCcccceeeeccCc
Confidence 999997765 45666654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7e-10 Score=122.78 Aligned_cols=267 Identities=12% Similarity=0.182 Sum_probs=151.9
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC-Ccc
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH-RDGRIMCWKMNA-RLL 225 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs-~DGtIrvWd~~~-g~~ 225 (838)
+.+++|++||+.+.-.... ...+...+....++++|++++|+.++ .++.|.+|++.. +.
T Consensus 9 ~~~~~I~~~~~~~~g~l~~------------------~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~- 69 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTL------------------LQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA- 69 (330)
T ss_pred CCCCCEEEEEECCCCceee------------------eeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-
Confidence 4588999999953211110 01111123566789999999987765 578899999863 21
Q ss_pred CCCCCcceeEEeccccccEEEEEEecCCC-EEEee-CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceec
Q 003217 226 DSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSV 303 (838)
Q Consensus 226 ~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~ 303 (838)
+...... .+.+....|+|+|+|+ |++++ .++.|.+|++++....... ... +.+
T Consensus 70 -----l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~------~~~---------~~~---- 124 (330)
T PRK11028 70 -----LTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP------IQI---------IEG---- 124 (330)
T ss_pred -----eEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc------eee---------ccC----
Confidence 1111111 1233567899999998 66555 5899999998632111000 000 000
Q ss_pred cceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCC
Q 003217 304 NGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSK 381 (838)
Q Consensus 304 ~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~ 381 (838)
......++.++++..++.+. ++.|.+||+.+...+..... .. ...
T Consensus 125 -------~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~--~~----------------------~~~-- 171 (330)
T PRK11028 125 -------LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP--AE----------------------VTT-- 171 (330)
T ss_pred -------CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCC--Cc----------------------eec--
Confidence 01223445666777776554 46899999976322110000 00 000
Q ss_pred CCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEEC-CCeEEEEcCC---C--CeeeE
Q 003217 382 KDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NGLLLQWDPN---G--NRLQD 454 (838)
Q Consensus 382 ~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~-DgtIrlWD~~---g--~~l~t 454 (838)
.. ......++++|||+ ++++.. +++|.+||++ | +.+++
T Consensus 172 -----------------~~------------------g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 172 -----------------VE------------------GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred -----------------CC------------------CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE
Confidence 00 01123467889988 556664 8899999983 3 23444
Q ss_pred eecCC------ccEE--EEEEcCCEEEEEee-CCeEEEEeCC--Cccccccccccc---CE--EEEEeCCCEEEEEc-CC
Q 003217 455 FQYLP------FAVQ--CLCTFGSQIWVGYM-NGIVQVLDLE--GNLLGGWVAHSS---PV--IKMAVGAGYIFTLA-NH 517 (838)
Q Consensus 455 l~~H~------~~V~--sls~dG~~LasGs~-DgtIrlWD~~--g~~i~~l~gH~~---~V--~sla~dg~~l~S~S-~D 517 (838)
+..+. .... .+.++|++|+++.. +++|.+|+++ +.. .++.+|.. .. ..+.+||++|+.+. .+
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~ 295 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS 295 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEeccccCCceEECCCCCEEEEEEccC
Confidence 43221 1222 34578999999864 7899999974 221 12223321 12 23446899988665 58
Q ss_pred CCeeeeecCC
Q 003217 518 GGIRGWNVTS 527 (838)
Q Consensus 518 gtIrlWdl~s 527 (838)
++|.+|++..
T Consensus 296 ~~v~v~~~~~ 305 (330)
T PRK11028 296 HHISVYEIDG 305 (330)
T ss_pred CcEEEEEEcC
Confidence 9999998753
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-10 Score=123.60 Aligned_cols=271 Identities=14% Similarity=0.220 Sum_probs=184.3
Q ss_pred eeEEEEecCC-E--EEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceee--ecCCCCeEEEEEcCCCC-EEE
Q 003217 134 FLRTIVCTEE-Q--LWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKES--VKGVSSVMCMVGDEASG-VVW 207 (838)
Q Consensus 134 ~~~~l~~~~~-~--l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~g~~~V~~la~s~dg~-~La 207 (838)
.++++..+.. + |.+|.|+++|+|-++.-.- |+..+ +. ..||.|..|.|+|. .|+
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-------------------~~lqS~~l~-~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-------------------PKLQSIHLE-KFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccC-------------------hhheeeeec-cCccceeeecCCCceEEE
Confidence 4666666644 3 3348899999998853111 11122 33 77999999999998 999
Q ss_pred EEeCCCcEEEEECCCCccCCCCCcceeEEecccc-ccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceee
Q 003217 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (838)
Q Consensus 208 SGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~ 285 (838)
+++.-.....||+.+.. +..+..+.||. ..+.....|+++. |+..+..|.|.|--..+++...++..
T Consensus 275 ~s~rrky~ysyDle~ak------~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki----- 343 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAK------VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI----- 343 (514)
T ss_pred ecccceEEEEeeccccc------cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-----
Confidence 99999999999999863 12233345664 5677888999998 78899999998877655442222111
Q ss_pred eEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEe-CCCcEEEEeccCccEEEEEecCCceEEeeecccCc
Q 003217 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (838)
Q Consensus 286 ~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~ 364 (838)
.+.+..+++++++.+||++ +++.|.+||+++..+++.|..++.+
T Consensus 344 -------------------------eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v---------- 388 (514)
T KOG2055|consen 344 -------------------------EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV---------- 388 (514)
T ss_pred -------------------------ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc----------
Confidence 2234455555666666654 5788999999999888776533221
Q ss_pred ccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEE
Q 003217 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLL 443 (838)
Q Consensus 365 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIr 443 (838)
.-++++.|++|. +++||..|.|-
T Consensus 389 --------------------------------------------------------~gts~~~S~ng~ylA~GS~~GiVN 412 (514)
T KOG2055|consen 389 --------------------------------------------------------HGTSLCISLNGSYLATGSDSGIVN 412 (514)
T ss_pred --------------------------------------------------------ceeeeeecCCCceEEeccCcceEE
Confidence 012455667776 78999999999
Q ss_pred EEcCCC-------CeeeEeecCCccEEEEEE--cCCEEEEEee--CCeEEEEeCCC-ccccccccc---ccCEEEEEe--
Q 003217 444 QWDPNG-------NRLQDFQYLPFAVQCLCT--FGSQIWVGYM--NGIVQVLDLEG-NLLGGWVAH---SSPVIKMAV-- 506 (838)
Q Consensus 444 lWD~~g-------~~l~tl~~H~~~V~sls~--dG~~LasGs~--DgtIrlWD~~g-~~i~~l~gH---~~~V~sla~-- 506 (838)
|||.+. +.+.++..-...|+++.+ |++.||.+|. +..+||--+.. .....|... -+-|+||++
T Consensus 413 IYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP 492 (514)
T KOG2055|consen 413 IYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP 492 (514)
T ss_pred EeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC
Confidence 999521 455555444567777765 6778877774 78899887642 233333322 234788885
Q ss_pred CCCEEEEEcCCCCeeeeecC
Q 003217 507 GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 507 dg~~l~S~S~DgtIrlWdl~ 526 (838)
.+.+++-|-.+|.|.+|.+.
T Consensus 493 ~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 493 NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCceEEeecCCCceeeEeec
Confidence 56789999999999999874
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=128.07 Aligned_cols=250 Identities=14% Similarity=0.199 Sum_probs=157.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC-C-EEEeeCCCcEEEEECCCcceeeecCC
Q 003217 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 203 g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
.-+||.|++-|.|||-|+.++ +....+.||.++|+.|.|.|+. + ++|||.|.+||+|++++..+...+-+
T Consensus 105 ~p~la~~G~~GvIrVid~~~~--------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSG--------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred CeeEEeecceeEEEEEecchh--------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence 357888889999999999987 5677789999999999999986 3 67999999999999987655433322
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeee
Q 003217 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (838)
Q Consensus 281 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (838)
.+ +| ...|.++-++.++.+++|++ |.++++|++.+.++-..++ .+..
T Consensus 177 ~e----------------gH----------rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE------~s~~ 224 (385)
T KOG1034|consen 177 VE----------------GH----------RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE------LSIT 224 (385)
T ss_pred cc----------------cc----------cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh------hhcc
Confidence 11 12 34677788888888999888 6799999998766522221 1111
Q ss_pred cccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECC
Q 003217 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGAN 439 (838)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~D 439 (838)
+++..... +-..+ .. .++. +. + -.-|...|.++-+= ...++|=|.+
T Consensus 225 ~~~~~t~~--------------pfpt~-~~-~fp~----fs-t------------~diHrnyVDCvrw~-gd~ilSksce 270 (385)
T KOG1034|consen 225 YSPNKTTR--------------PFPTP-KT-HFPD----FS-T------------TDIHRNYVDCVRWF-GDFILSKSCE 270 (385)
T ss_pred cCCCCccC--------------cCCcc-cc-cccc----cc-c------------cccccchHHHHHHH-hhheeecccC
Confidence 11111000 00000 00 0000 00 0 00122333332221 1246777778
Q ss_pred CeEEEEcC-C-CC-------------eeeEeecCCccEEEE--EEc--CCEEEEEeeCCeEEEEeCCC-cc--ccccccc
Q 003217 440 GLLLQWDP-N-GN-------------RLQDFQYLPFAVQCL--CTF--GSQIWVGYMNGIVQVLDLEG-NL--LGGWVAH 497 (838)
Q Consensus 440 gtIrlWD~-~-g~-------------~l~tl~~H~~~V~sl--s~d--G~~LasGs~DgtIrlWD~~g-~~--i~~l~gH 497 (838)
+.|..|-. + ++ .+.+|......|+-+ ++| ++.||.|...|.|.+||++. .. ..++.-+
T Consensus 271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s 350 (385)
T KOG1034|consen 271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS 350 (385)
T ss_pred ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence 88999976 3 22 234444455566655 444 67999999999999999973 22 2233222
Q ss_pred --ccCEEE--EEeCCCEEEEEcCCCCeeeeecC
Q 003217 498 --SSPVIK--MAVGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 498 --~~~V~s--la~dg~~l~S~S~DgtIrlWdl~ 526 (838)
...|.. ++.|+..|+-...|++|..||..
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 123433 44699999999999999999853
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-10 Score=124.26 Aligned_cols=127 Identities=15% Similarity=0.152 Sum_probs=98.9
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvW 267 (838)
+++|+.++|+| +...|||||.|.+|+||.+..+. -..+..+.+..|.||+..|.-|++.|... |+|++.|.+|.+|
T Consensus 81 t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~-l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 81 TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENG-LTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred cccccccccCccCCceeecCCCCceEEEEECCCcc-cccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence 88999999999 45789999999999999986541 01122355678999999999999999775 7899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
++.+++..+++. + ...+..+.+..+|..+.+.. |+.|+|||.++|+++.
T Consensus 160 nv~tgeali~l~-h-----------------------------pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~ 209 (472)
T KOG0303|consen 160 NVGTGEALITLD-H-----------------------------PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS 209 (472)
T ss_pred eccCCceeeecC-C-----------------------------CCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee
Confidence 999887655543 1 22345566666777666554 7899999999999865
Q ss_pred EE
Q 003217 347 VF 348 (838)
Q Consensus 347 ~l 348 (838)
.-
T Consensus 210 e~ 211 (472)
T KOG0303|consen 210 EG 211 (472)
T ss_pred ec
Confidence 43
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.6e-11 Score=120.01 Aligned_cols=267 Identities=16% Similarity=0.166 Sum_probs=161.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec-cccccEEEEEEecCCCEEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (838)
.+.|+|+.|..++ +|.+|..-|.+++|++.+. +....|+ .|+..|+.+--.|++.|.|=+.|.++.+|++
T Consensus 14 ~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~--------r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 14 SSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTE--------RDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTI 84 (323)
T ss_pred cchheehhhccch-hhhcccccceEEEEEeecC--------ccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEc
Confidence 6789999998655 5899999999999999986 5566777 5689999999999988999999999999998
Q ss_pred CCcc--------------eeeecCCCceeeeEEEE--eeceeecccceeccc----eeeee------cCCeEEEEEcC-C
Q 003217 270 EAIE--------------KALSLKPEERHTAALIV--ERSYIDLRSHLSVNG----FSSIL------TSDIKNLLSDH-S 322 (838)
Q Consensus 270 ~~~~--------------~~~~~~~~~~~~~~~~~--~~s~~~l~~~~~~~~----~~~~~------s~~v~~las~~-~ 322 (838)
.... +.+++.........+.. .+. .+. .|....+ ++..+ .+.+.+.--.. +
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rg-sde-~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c 162 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRG-SDE-THKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC 162 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcc-cch-hhhhccCccceeEccCchhccccCceeeeeccccc
Confidence 6511 11222111111100000 000 000 0000000 00000 11222222111 1
Q ss_pred -CCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCccee
Q 003217 323 -RAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAI 399 (838)
Q Consensus 323 -~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~ 399 (838)
...+..++ ++.+-+||+.++..+..|.....++ .
T Consensus 163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~----------------------~--------------------- 199 (323)
T KOG0322|consen 163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVE----------------------S--------------------- 199 (323)
T ss_pred cceEEEEEeccCCeEEEEEccCCceeeccccccccc----------------------c---------------------
Confidence 22333344 3567788887775433332111100 0
Q ss_pred eecCCcEEEEeccCccccCCCceEEEEEcCC-CcEEEEECCCeEEEEcCC---CCe--eeEeecCCccEE--EEEEcCCE
Q 003217 400 MGAADAVRRVAAKGGFGDDNRRTEALTTSID-GMIWTGGANGLLLQWDPN---GNR--LQDFQYLPFAVQ--CLCTFGSQ 471 (838)
Q Consensus 400 ~g~~~~v~~v~~~g~~~~~~~~v~ala~S~d-g~l~Sgs~DgtIrlWD~~---g~~--l~tl~~H~~~V~--sls~dG~~ 471 (838)
....|...|.+|.+.+- .+=++|+.+..+..|.++ |.+ ..+++.-.-.|. .|-+|++.
T Consensus 200 --------------~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KI 265 (323)
T KOG0322|consen 200 --------------PNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKI 265 (323)
T ss_pred --------------chhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcE
Confidence 01123344444444322 123567766678888872 432 122222222344 35679999
Q ss_pred EEEEeeCCeEEEEeCC-CcccccccccccCEEEEEeCC--CEEEEEcCCCCeeeeec
Q 003217 472 IWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGA--GYIFTLANHGGIRGWNV 525 (838)
Q Consensus 472 LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg--~~l~S~S~DgtIrlWdl 525 (838)
+|+++-|+.||||.-. .+.++.++-|.+.|+++++.+ ..++.+|.|++|.+|++
T Consensus 266 lATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 266 LATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999965 789999999999999999744 57899999999999986
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-11 Score=128.65 Aligned_cols=172 Identities=15% Similarity=0.180 Sum_probs=121.3
Q ss_pred cccCCCceEEEEEcC--CCcEEEEECCCeEEEEcC-C-C------CeeeEeecCCccEEEEEEc---CCEEEEEeeCCeE
Q 003217 415 FGDDNRRTEALTTSI--DGMIWTGGANGLLLQWDP-N-G------NRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIV 481 (838)
Q Consensus 415 ~~~~~~~v~ala~S~--dg~l~Sgs~DgtIrlWD~-~-g------~~l~tl~~H~~~V~sls~d---G~~LasGs~DgtI 481 (838)
+.+|...|..+++.| |..|+|||.|.+|++|++ + | +.+..|.+|...|--+... .+.|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 557788888888877 445899999999999998 4 3 4567788999999988764 4588999999999
Q ss_pred EEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCCCchhhhhhhhccccccccccceeeEEEE
Q 003217 482 QVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGT 558 (838)
Q Consensus 482 rlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~~d~~~~~~l~~r~~~y~~~~~~~i~~~t 558 (838)
.+||+. |..+.++. |.+.|+++.+ ||++++|.+.|+.||+||.+.......-..++-.+. ...||++.
T Consensus 157 ~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~--------~Raifl~~ 227 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKP--------ARAIFLAS 227 (472)
T ss_pred EEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCc--------ceeEEecc
Confidence 999997 66666676 9999999985 899999999999999999877555433222221111 11233333
Q ss_pred EEe---CCCCCCcccccccccCCCCCceEEEEEeecccCccchh
Q 003217 559 WNV---GQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFL 599 (838)
Q Consensus 559 wNv---~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~ 599 (838)
-++ |-.+.+..++.-|=....+.| ++|||++-+.|.+
T Consensus 228 g~i~tTGfsr~seRq~aLwdp~nl~eP----~~~~elDtSnGvl 267 (472)
T KOG0303|consen 228 GKIFTTGFSRMSERQIALWDPNNLEEP----IALQELDTSNGVL 267 (472)
T ss_pred CceeeeccccccccceeccCcccccCc----ceeEEeccCCceE
Confidence 222 112333334444545444555 7999998665543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-10 Score=120.49 Aligned_cols=258 Identities=12% Similarity=0.141 Sum_probs=164.1
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC-C-C-EEEeeCCCcEEEEECCCcceeeecCC
Q 003217 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-G-D-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 204 ~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G-~-L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
..+|++-+.|.||++|..++ +....+++|...++.|.|..+ + . +.||+.||+||+||+.+..+.-.
T Consensus 41 ~~vav~lSngsv~lyd~~tg--------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~--- 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG--------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR--- 109 (376)
T ss_pred eeEEEEecCCeEEEEeccch--------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh---
Confidence 56899999999999999997 677889999999999999875 2 4 68999999999999976322100
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-----CcEEEEeccCccE-EEEEecCCce
Q 003217 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-----LSFALWDARTREL-LKVFNIDGQI 354 (838)
Q Consensus 281 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-----~tI~lWD~~tg~~-l~~l~~~~~~ 354 (838)
+....+ +.....+++..-.+..+.++.. -.+.+||++..+. ++.+.- .
T Consensus 110 --------------~~~~~~---------~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e-S-- 163 (376)
T KOG1188|consen 110 --------------ISWTQQ---------SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE-S-- 163 (376)
T ss_pred --------------eeccCC---------CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh-h--
Confidence 001111 0112334444334445555543 2588999987654 333311 0
Q ss_pred EEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCc-ceeeecCCcEEEEec-cCc--------cccCCCceEE
Q 003217 355 ENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAA-KGG--------FGDDNRRTEA 424 (838)
Q Consensus 355 ~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~-~~~~g~~~~v~~v~~-~g~--------~~~~~~~v~a 424 (838)
+...++.+.|.|... ..++|+.||...+-. ++. ...+...|..
T Consensus 164 ---------------------------H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~ 216 (376)
T KOG1188|consen 164 ---------------------------HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHL 216 (376)
T ss_pred ---------------------------ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeee
Confidence 011223456776665 456788888765543 221 1124456778
Q ss_pred EEEcCCC--cEEEEECCCeEEEEcC-CCCeeeEeec-------------CCccEEEEEE-cCCEEEEEee-CCeEEEE--
Q 003217 425 LTTSIDG--MIWTGGANGLLLQWDP-NGNRLQDFQY-------------LPFAVQCLCT-FGSQIWVGYM-NGIVQVL-- 484 (838)
Q Consensus 425 la~S~dg--~l~Sgs~DgtIrlWD~-~g~~l~tl~~-------------H~~~V~sls~-dG~~LasGs~-DgtIrlW-- 484 (838)
+.|..++ +|+.-+..++..+|+. .|.+...+.- -..-|.+.++ ++...+.++. -+...++
T Consensus 217 igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~ 296 (376)
T KOG1188|consen 217 IGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPL 296 (376)
T ss_pred eeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEe
Confidence 8898888 7888888999999999 5654433321 1223444555 3344444333 4444444
Q ss_pred -eCC-C---cccccccc-cccCEEEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 485 -DLE-G---NLLGGWVA-HSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 485 -D~~-g---~~i~~l~g-H~~~V~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
|.. + +.+..+.| |...|.++.+ .+..++||+.||.+.+|..
T Consensus 297 ~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 297 VDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 322 2 45677777 6667777775 4668999999999999986
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.9e-10 Score=129.86 Aligned_cols=278 Identities=15% Similarity=0.130 Sum_probs=163.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc---cccEEEEEEecCCC---EEEeeCCCcEEE
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH---RGPVLSLCISSYGD---LWSGSEGGGIKI 266 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH---~~~V~slafs~dG~---L~SgS~DgtIrv 266 (838)
+-..+.|.|=...|+++...-+|++||.+.+ +....|..+ ...|+.|.+-.+-. |.+||.||.|||
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~--------~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKG--------RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccC--------ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEE
Confidence 3455677776677888876778999999886 333334333 35799999876543 689999999999
Q ss_pred EECCC-cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEE-cCCCCEEEEeCC-CcEEEEeccCcc
Q 003217 267 WPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS-DHSRAKVWSAGF-LSFALWDARTRE 343 (838)
Q Consensus 267 Wd~~~-~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las-~~~~~~V~s~s~-~tI~lWD~~tg~ 343 (838)
|+--. +.+.. .-+.+. ..+.++ ...+.+.. ++.. ....+.+.++++ ..|+|||+....
T Consensus 1138 wk~y~~~~~~~------eLVTaw------~~Ls~~------~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~ 1198 (1387)
T KOG1517|consen 1138 WKDYADKWKKP------ELVTAW------SSLSDQ------LPGARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ 1198 (1387)
T ss_pred ecccccccCCc------eeEEee------cccccc------CccCCCCC-eeeehhhhCCeEEecCCeeEEEEEecccce
Confidence 97421 10100 001100 011111 00001111 2221 223345555554 689999998876
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc---------Cc
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK---------GG 414 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~---------g~ 414 (838)
++.-+...... .. ...+.. ...+..+..|-+||..|+... -.
T Consensus 1199 ~~~diP~~s~t---------~v---------TaLS~~-----------~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1199 VVADIPYGSST---------LV---------TALSAD-----------LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred eEeecccCCCc---------cc---------eeeccc-----------ccCCceEEEeecCCceEEeecccCCcccccee
Confidence 65443211100 00 000110 011234566777777666541 12
Q ss_pred cccCCCc--eEEEEEcCCC--cEEEEECCCeEEEEcCCCCeeeE-e--ecCC---ccEEEEEE--cCCEEEEEeeCCeEE
Q 003217 415 FGDDNRR--TEALTTSIDG--MIWTGGANGLLLQWDPNGNRLQD-F--QYLP---FAVQCLCT--FGSQIWVGYMNGIVQ 482 (838)
Q Consensus 415 ~~~~~~~--v~ala~S~dg--~l~Sgs~DgtIrlWD~~g~~l~t-l--~~H~---~~V~sls~--dG~~LasGs~DgtIr 482 (838)
...|+.. |..+.+-+.| .|+|||.||.|++||+.+....+ + ..|- +.++++.. +...||+|+. +.|+
T Consensus 1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ik 1328 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIK 1328 (1387)
T ss_pred ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEE
Confidence 2345544 6666665544 59999999999999996522222 2 2232 24777765 5678999988 9999
Q ss_pred EEeCCCccccccccc-------ccCEEEEEeCCCE--EEEEcCCCCeeeeecCC
Q 003217 483 VLDLEGNLLGGWVAH-------SSPVIKMAVGAGY--IFTLANHGGIRGWNVTS 527 (838)
Q Consensus 483 lWD~~g~~i~~l~gH-------~~~V~sla~dg~~--l~S~S~DgtIrlWdl~s 527 (838)
||++.|+.+..++-+ .+.+.++++++.. ++.|+.|.+|.++....
T Consensus 1329 Iy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1329 IYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred EEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 999998766555433 2456888888764 66889999999987543
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.6e-09 Score=121.98 Aligned_cols=352 Identities=17% Similarity=0.188 Sum_probs=178.8
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003217 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNAR 223 (838)
Q Consensus 144 ~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g 223 (838)
...+..+..+.+|+..+.....+ ++.-.++|+-.+.|.+++|.++++|+|..||.|.+|.--..
T Consensus 174 ~~~i~~~~~~~~~~v~~~~~~~~----------------~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~ 237 (792)
T KOG1963|consen 174 FKGIVHMCKIHIYFVPKHTKHTS----------------SRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS 237 (792)
T ss_pred EEEEEEeeeEEEEEecccceeec----------------cchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc
Confidence 33446678889999865332211 11112334556999999999999999999999999974431
Q ss_pred ccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceee-----------ecCCCceeeeEEEE-
Q 003217 224 LLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKAL-----------SLKPEERHTAALIV- 290 (838)
Q Consensus 224 ~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~-----------~~~~~~~~~~~~~~- 290 (838)
. ..-.....|.=|...|++++|+++|. |+||+..+.+-+|.++++++.+ ...+... ..++..
T Consensus 238 ~----~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~-~~sl~~~ 312 (792)
T KOG1963|consen 238 S----DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSD-LYSLVLE 312 (792)
T ss_pred c----cccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCC-eEEEEec
Confidence 0 01122344555889999999999997 8999999999999999866432 1111111 111111
Q ss_pred eeceeecc-----cceeccceeee-------ecCCeEEEEEcC-CCCEEEEeCCCcEEEEeccCccEEEEEecC------
Q 003217 291 ERSYIDLR-----SHLSVNGFSSI-------LTSDIKNLLSDH-SRAKVWSAGFLSFALWDARTRELLKVFNID------ 351 (838)
Q Consensus 291 ~~s~~~l~-----~~~~~~~~~~~-------~s~~v~~las~~-~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~------ 351 (838)
+.++..++ ...++.|+... +..-...+..++ .+..+..+..+.|.+||+.+...+..+..-
T Consensus 313 DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~ 392 (792)
T KOG1963|consen 313 DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSD 392 (792)
T ss_pred CceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccC
Confidence 12222221 11223333221 112234455565 444566666788999999887766544321
Q ss_pred CceE-----EeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 352 GQIE-----NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 352 ~~~~-----~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
+... .++..+.......--+ +++-.-...+ ....+.||+...+. .+ +.+.++- ...|.....+..
T Consensus 393 ~~~n~~v~itav~~~~~gs~maT~E--~~~d~~~~~~-~e~~LKFW~~n~~~-----kt-~~L~T~I-~~PH~~~~vat~ 462 (792)
T KOG1963|consen 393 GDVNIQVGITAVARSRFGSWMATLE--ARIDKFNFFD-GEVSLKFWQYNPNS-----KT-FILNTKI-NNPHGNAFVATI 462 (792)
T ss_pred CcceeEEeeeeehhhccceEEEEee--eeehhhhccC-ceEEEEEEEEcCCc-----ce-eEEEEEE-ecCCCceeEEEE
Confidence 1000 0001011100000000 0000000000 01134444321100 00 0000000 012222222222
Q ss_pred -EcCC-C-cEEEEECCCeEEEEcCCC-----------CeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCC-c
Q 003217 427 -TSID-G-MIWTGGANGLLLQWDPNG-----------NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG-N 489 (838)
Q Consensus 427 -~S~d-g-~l~Sgs~DgtIrlWD~~g-----------~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g-~ 489 (838)
.++- . +.++++.||.+|+|-.++ .|...-..|..++++.++ ||+.|++ +.|++|.+||... +
T Consensus 463 ~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~-s~~~~Itiwd~~~~~ 541 (792)
T KOG1963|consen 463 FLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV-SFDDTITIWDYDTKN 541 (792)
T ss_pred EecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE-ecCCEEEEecCCChh
Confidence 2222 2 578999999999997632 132222236777777655 6766666 5788999999764 2
Q ss_pred ccccccccc-cCEEEEEe----CCCEEEEEcCCCCeeeeecCC
Q 003217 490 LLGGWVAHS-SPVIKMAV----GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 490 ~i~~l~gH~-~~V~sla~----dg~~l~S~S~DgtIrlWdl~s 527 (838)
.+....+-. .++..+.+ .....+....-..+.+|++-+
T Consensus 542 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~ 584 (792)
T KOG1963|consen 542 ELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLS 584 (792)
T ss_pred hhhccccccccchHhHhhhcccccccceeeccCceEehHhhhh
Confidence 222111211 12222222 122344555667778888643
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.1e-10 Score=120.53 Aligned_cols=158 Identities=16% Similarity=0.217 Sum_probs=99.8
Q ss_pred CCEEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEE
Q 003217 142 EEQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCW 218 (838)
Q Consensus 142 ~~~l~~g~--d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg-~~LaSGs~DGtIrvW 218 (838)
+..+.+.. -|.|-+||+.+-... + ..-+....| .++|.|+.|+|.+ .+|++.|+||+||+=
T Consensus 199 ~~~lva~GdK~G~VG~Wn~~~~~~d--------------~-d~v~~f~~h-s~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 199 NRKLVAVGDKGGQVGLWNFGTQEKD--------------K-DGVYLFTPH-SGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred cceEEEEccCCCcEEEEecCCCCCc--------------c-CceEEeccC-CccccceEecCCChhheeeeccCceeeee
Confidence 33555533 469999999521111 1 111222334 7899999999966 789999999999999
Q ss_pred ECCCCcc--------------------CCC-----CCc------------ceeEEeccccccEEEEEEecCCC--EEEee
Q 003217 219 KMNARLL--------------------DSD-----DGF------------GEVLSWQAHRGPVLSLCISSYGD--LWSGS 259 (838)
Q Consensus 219 d~~~g~~--------------------~~~-----~~~------------~~~~~l~gH~~~V~slafs~dG~--L~SgS 259 (838)
|+++..- +.. ..+ .+...|.-|...|++|++.|-.. |+|||
T Consensus 263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s 342 (498)
T KOG4328|consen 263 DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATAS 342 (498)
T ss_pred eecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecc
Confidence 9887531 000 000 01122345888999999999654 89999
Q ss_pred CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEe
Q 003217 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWD 338 (838)
Q Consensus 260 ~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD 338 (838)
.|+|+||||+......-+ + .+. .-.| .-.|....+++.++.|++.. |..|+|||
T Consensus 343 ~D~T~kIWD~R~l~~K~s----p-~ls----------t~~H----------rrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 343 LDQTAKIWDLRQLRGKAS----P-FLS----------TLPH----------RRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred cCcceeeeehhhhcCCCC----c-cee----------cccc----------cceeeeeEEcCCCCceEeeccCCceEEee
Confidence 999999999965211000 0 000 0011 22456667778777666544 78999999
Q ss_pred cc
Q 003217 339 AR 340 (838)
Q Consensus 339 ~~ 340 (838)
..
T Consensus 398 ss 399 (498)
T KOG4328|consen 398 SS 399 (498)
T ss_pred cc
Confidence 74
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=121.34 Aligned_cols=96 Identities=21% Similarity=0.274 Sum_probs=80.3
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLD 226 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g~~~ 226 (838)
|.-|-|||-|+.+.+..+. ++. | ..+|..+.+.|+. ++|.|||+|.+||+|++.+.
T Consensus 112 G~~GvIrVid~~~~~~~~~-----------------~~g--h-G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~--- 168 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKN-----------------YRG--H-GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD--- 168 (385)
T ss_pred cceeEEEEEecchhhhccc-----------------eec--c-CccchhhhcCCCCCcEEEEecCCceEEEEeccCC---
Confidence 6678999999977655432 222 3 6689999999875 79999999999999999997
Q ss_pred CCCCcceeEEe---ccccccEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 227 SDDGFGEVLSW---QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 227 ~~~~~~~~~~l---~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
.++..| .||++.|.++.|+.+|. |+|++.|.+|++|++..
T Consensus 169 -----~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 169 -----VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred -----eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 556554 68999999999999997 89999999999999974
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.1e-10 Score=113.80 Aligned_cols=230 Identities=15% Similarity=0.131 Sum_probs=146.0
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCC-------CcEEEEECCCcceeeecCCC
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEG-------GGIKIWPWEAIEKALSLKPE 281 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~D-------gtIrvWd~~~~~~~~~~~~~ 281 (838)
.|+.|.+-+++.+. +. -....|..|.+.|..|+-+|-.. |+|+-.| ..+-||.+......-..
T Consensus 38 ~dNqVhll~~d~e~----s~-l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~--- 109 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEG----SE-LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS--- 109 (370)
T ss_pred CcceeEEEEecCcc----ch-hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc---
Confidence 46777777776642 11 12344677889999999998654 4554332 35678887431111000
Q ss_pred ceeeeEEEEeeceeecccceeccceeee---ecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEE-EEEecCCceEEe
Q 003217 282 ERHTAALIVERSYIDLRSHLSVNGFSSI---LTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELL-KVFNIDGQIENR 357 (838)
Q Consensus 282 ~~~~~~~~~~~s~~~l~~~~~~~~~~~~---~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l-~~l~~~~~~~~~ 357 (838)
. +..-++.+ ..+.+.|+...|++.++++..+..|.+|++..+..+ ..+......
T Consensus 110 -~------------------tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~--- 167 (370)
T KOG1007|consen 110 -S------------------TLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESA--- 167 (370)
T ss_pred -c------------------hhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccc---
Confidence 0 00001111 134688999999999999999999999999765431 111100000
Q ss_pred eecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEE
Q 003217 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG 437 (838)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs 437 (838)
+.+ ..| + .|.+..| .||..+...
T Consensus 168 -------------e~~---------------~~f--------t-----------sg~WspH----------Hdgnqv~tt 190 (370)
T KOG1007|consen 168 -------------EMR---------------HSF--------T-----------SGAWSPH----------HDGNQVATT 190 (370)
T ss_pred -------------ccc---------------cee--------c-----------ccccCCC----------CccceEEEe
Confidence 000 000 0 0111111 145544445
Q ss_pred CCCeEEEEcC-CCCeeeEe-ecCCccEEEEEEcCC---EEEEEeeCCeEEEEeCC-C-cccccccccccCEEEEEe---C
Q 003217 438 ANGLLLQWDP-NGNRLQDF-QYLPFAVQCLCTFGS---QIWVGYMNGIVQVLDLE-G-NLLGGWVAHSSPVIKMAV---G 507 (838)
Q Consensus 438 ~DgtIrlWD~-~g~~l~tl-~~H~~~V~sls~dG~---~LasGs~DgtIrlWD~~-g-~~i~~l~gH~~~V~sla~---d 507 (838)
.|++++.||+ +-++...+ ..|...|..+.+..+ +|++|+.||.||+||.. . .++..+.+|+.+||+|.+ .
T Consensus 191 ~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 191 SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH 270 (370)
T ss_pred CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc
Confidence 6899999999 55544333 368888998876533 89999999999999987 3 479999999999999986 4
Q ss_pred CCEEEEEcCCCCeeeeecCC
Q 003217 508 AGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 508 g~~l~S~S~DgtIrlWdl~s 527 (838)
.+.++|+|.|..|.+|...+
T Consensus 271 dqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred ceEEEecCCCceeEEEeccc
Confidence 67899999999999998654
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.9e-09 Score=122.16 Aligned_cols=257 Identities=14% Similarity=0.109 Sum_probs=150.7
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCC-CcceeEEeccccccEEEEEEecCC---CEEEeeCCCcEE
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDD-GFGEVLSWQAHRGPVLSLCISSYG---DLWSGSEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~-~~~~~~~l~gH~~~V~slafs~dG---~L~SgS~DgtIr 265 (838)
.++|.|+.|.| +..+|+.|+++|.|-+||+..+. .. +......-..|+.+|+.+.+..+- .++|+|.||.|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~---~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~ 318 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGS---DTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC 318 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCC---CCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence 67899999998 45889999999999999998763 11 222222334689999999997642 399999999999
Q ss_pred EEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCC-CEEEEeCCCcEEEEeccCccE
Q 003217 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAGFLSFALWDARTREL 344 (838)
Q Consensus 266 vWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~V~s~s~~tI~lWD~~tg~~ 344 (838)
.|+++...........+... + .+........+..+.+.+.. .....|++.+ .+
T Consensus 319 ~W~~~~l~~P~e~~~~~~~~--------------~---~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G---------~v 372 (555)
T KOG1587|consen 319 SWDTDMLSLPVEGLLLESKK--------------H---KGQQSSKAVGATSLKFEPTDPNHFIVGTEEG---------KV 372 (555)
T ss_pred eeeccccccchhhccccccc--------------c---cccccccccceeeEeeccCCCceEEEEcCCc---------EE
Confidence 99875422110000000000 0 00000001112223332211 1122222211 11
Q ss_pred EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEE
Q 003217 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (838)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (838)
.+ +.+++.... .. ....++ ..+.-|...|.+
T Consensus 373 ~~--------------------------------~~r~g~~~~-~~------~~~~~~----------~~~~~h~g~v~~ 403 (555)
T KOG1587|consen 373 YK--------------------------------GCRKGYTPA-PE------VSYKGH----------STFITHIGPVYA 403 (555)
T ss_pred EE--------------------------------EeccCCccc-cc------cccccc----------ccccccCcceEe
Confidence 00 000000000 00 000000 013345667778
Q ss_pred EEEcCCCc--EEEEECCCeEEEEcCC--CCeeeEeecCCccEEEEEEcC---CEEEEEeeCCeEEEEeCCC---cccccc
Q 003217 425 LTTSIDGM--IWTGGANGLLLQWDPN--GNRLQDFQYLPFAVQCLCTFG---SQIWVGYMNGIVQVLDLEG---NLLGGW 494 (838)
Q Consensus 425 la~S~dg~--l~Sgs~DgtIrlWD~~--g~~l~tl~~H~~~V~sls~dG---~~LasGs~DgtIrlWD~~g---~~i~~l 494 (838)
+.++|=+. ++|++ |-+||||.-. ...+-.+..+...|++++... ..++++..||.|.+||+.- .++.+.
T Consensus 404 v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~ 482 (555)
T KOG1587|consen 404 VSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ 482 (555)
T ss_pred eecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc
Confidence 88887664 34555 8899999874 456777777888899998753 4788999999999999752 345555
Q ss_pred cccccCEEEEEe--CCCEEEEEcCCCCeeeeecC
Q 003217 495 VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 495 ~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~ 526 (838)
.-+......+.+ .|+.++.|...|++.+|++.
T Consensus 483 ~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 483 KVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 555444445553 58889999999999999973
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=136.83 Aligned_cols=231 Identities=19% Similarity=0.272 Sum_probs=150.5
Q ss_pred EEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEC
Q 003217 144 QLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG-VVWSGHRDGRIMCWKM 220 (838)
Q Consensus 144 ~l~~g--~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~-~LaSGs~DGtIrvWd~ 220 (838)
.|++| .||.|-+||........ +...-.+...| +++|..|.|++..+ +||||+.||.|-+||+
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~-------------~~~~la~~~~h-~G~V~gLDfN~~q~nlLASGa~~geI~iWDl 146 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANA-------------SEEVLATKSKH-TGPVLGLDFNPFQGNLLASGADDGEILIWDL 146 (1049)
T ss_pred ceeeccccCCceEEecchhhccCc-------------chHHHhhhccc-CCceeeeeccccCCceeeccCCCCcEEEecc
Confidence 46664 58999999986642111 10101122344 88999999999776 9999999999999999
Q ss_pred CCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecc
Q 003217 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (838)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 298 (838)
+.-. .++... -+.-...|.+|++...-. |+||+.+|.+-|||+...+..+.+......
T Consensus 147 nn~~----tP~~~~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~-------------- 206 (1049)
T KOG0307|consen 147 NKPE----TPFTPG--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR-------------- 206 (1049)
T ss_pred CCcC----CCCCCC--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCc--------------
Confidence 8741 111111 123356799999987543 789999999999999765444444321110
Q ss_pred cceeccceeeeecCCeEEEEEcCCCC-EEEEeC-C---CcEEEEeccCcc-EEEEEecCCceEEeeecccCcccccccce
Q 003217 299 SHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-F---LSFALWDARTRE-LLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (838)
Q Consensus 299 ~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~---~tI~lWD~~tg~-~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (838)
..+..++-.++.. .|+.++ + -.|.+||++--. .+++
T Consensus 207 -------------~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~------------------------- 248 (1049)
T KOG0307|consen 207 -------------MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI------------------------- 248 (1049)
T ss_pred -------------cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh-------------------------
Confidence 0112233333222 344443 2 268999986311 1111
Q ss_pred eeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC--cEEEEECCCeEEEEcC-CC
Q 003217 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG--MIWTGGANGLLLQWDP-NG 449 (838)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg--~l~Sgs~DgtIrlWD~-~g 449 (838)
+..|...|.++.+.+.+ .++|++.|+.|.+|+. +|
T Consensus 249 ------------------------------------------~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 249 ------------------------------------------LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred ------------------------------------------hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 22333334455554433 4789999999999999 79
Q ss_pred CeeeEeecCCccEEEEEE---cCCEEEEEeeCCeEEEEeCCC
Q 003217 450 NRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLEG 488 (838)
Q Consensus 450 ~~l~tl~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~g 488 (838)
+.+.++-...+++..+.+ +...+++++.||.|.|+.+.+
T Consensus 287 Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 287 EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 999999888889888865 345899999999999999763
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.1e-10 Score=122.10 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=61.8
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcc
Q 003217 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 195 ~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~ 273 (838)
.+|+|+.+|..|++|+.||++|+|+...- ..+....+|.+.|.+|.|||||+ |+|-+.| ..+||+++++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc--------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence 78999999999999999999999996653 44566789999999999999998 7888888 89999998863
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-10 Score=122.70 Aligned_cols=176 Identities=19% Similarity=0.191 Sum_probs=127.6
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCC-CCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSD-DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~-~LaSGs~DGtIrvWd~~~g~~~~~-~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (838)
..||+.+.|.+++. .|+||+.|..||+|.++.+..... ...+....|..|..+|+.|.|+|+|. |+||+.+|.|-+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 56899999988776 999999999999999887642111 12334456789999999999999998 6899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKV 347 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~ 347 (838)
...... +.|.++ +. ..
T Consensus 93 k~~~~~--------------------------------------------------------------~~~~d~-e~-~~ 108 (434)
T KOG1009|consen 93 KQGDVR--------------------------------------------------------------IFDADT-EA-DL 108 (434)
T ss_pred EecCcC--------------------------------------------------------------Cccccc-hh-hh
Confidence 752200 000011 00 00
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
..+ .|.+.. .+..|...+..+++
T Consensus 109 ---~ke--------------------~w~v~k----------------------------------~lr~h~~diydL~W 131 (434)
T KOG1009|consen 109 ---NKE--------------------KWVVKK----------------------------------VLRGHRDDIYDLAW 131 (434)
T ss_pred ---Ccc--------------------ceEEEE----------------------------------Eecccccchhhhhc
Confidence 000 000000 01224445667888
Q ss_pred cCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCC
Q 003217 428 SIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 428 S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~ 487 (838)
++|++ +++|+.|+++++||+ .|+.+..+..|...|+-++.| ++++++=+.|...+...+.
T Consensus 132 s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 132 SPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred cCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence 99988 789999999999999 899999999999999999876 6799999999877777764
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.4e-11 Score=135.29 Aligned_cols=240 Identities=16% Similarity=0.210 Sum_probs=161.5
Q ss_pred eEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecC
Q 003217 234 VLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTS 312 (838)
Q Consensus 234 ~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~ 312 (838)
+..+.||.++|.|+.|+..|. +++||.|..||||..++..+.-+ +++| ++
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGh----------s~ 233 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS-------------------CRGH----------SG 233 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhcc-------------------CCCC----------cc
Confidence 445789999999999999998 89999999999999877544222 2344 66
Q ss_pred CeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeE
Q 003217 313 DIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (838)
Q Consensus 313 ~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~ 391 (838)
+++.++.+.....+++++ |..|++|-+.++.++.++.+|...++.+++++....+.++..+.|.+.-. . ..+
T Consensus 234 ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~sss~dgt~~~wd~r~~----~---~~y 306 (1113)
T KOG0644|consen 234 DITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRASSSDDGTCRIWDARLE----P---RIY 306 (1113)
T ss_pred ccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccccCCCCCceEecccccc----c---ccc
Confidence 778888877777888887 46799999999999999998887767777777654433333332221100 0 000
Q ss_pred eecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCCCCeeeEeecCCccEEEE---EE
Q 003217 392 FQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCL---CT 467 (838)
Q Consensus 392 ~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sl---s~ 467 (838)
.++- -.+.+. ..+.++.+-..+. .++|+.|++-+.|...- +..|...+.-+ +.
T Consensus 307 ~prp-----------------~~~~~~-~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~-----l~~~~~~lif~t~ssd 363 (1113)
T KOG0644|consen 307 VPRP-----------------LKFTEK-DLVDSILFENNGDRFLTGSRDGEARNHEFEQ-----LAWRSNLLIFVTRSSD 363 (1113)
T ss_pred CCCC-----------------CCcccc-cceeeeeccccccccccccCCcccccchhhH-----hhhhccceEEEecccc
Confidence 0000 001111 2233344444444 78999999888887521 11122111111 11
Q ss_pred cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe---CCCEEEEEcCCCCeeeeecCCCCCCc
Q 003217 468 FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTSPGPLD 532 (838)
Q Consensus 468 dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~---dg~~l~S~S~DgtIrlWdl~s~~~~d 532 (838)
...+.+++=.+-.+.+|++. |.+.+.+.+|.+.+..+.+ ++....|++.||...|||+....|+.
T Consensus 364 ~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 364 LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred ccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcce
Confidence 12455666678899999985 8999999999999998874 56677899999999999987666653
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.6e-10 Score=120.89 Aligned_cols=204 Identities=16% Similarity=0.213 Sum_probs=138.3
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~ 227 (838)
|..++|+|||+..-..... .+ .| .+.|+||.+.-...+||+++..|-|.+-.+.++
T Consensus 98 G~~~~Vkiwdl~~kl~hr~-----------------lk--dh-~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~---- 153 (673)
T KOG4378|consen 98 GQSGCVKIWDLRAKLIHRF-----------------LK--DH-QSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK---- 153 (673)
T ss_pred CcCceeeehhhHHHHHhhh-----------------cc--CC-cceeEEEEecCCcceeEEeccCCcEEEEecccC----
Confidence 5688999999973222111 11 23 778999999988999999999999999999886
Q ss_pred CCCcceeEEeccc-cccEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceecc
Q 003217 228 DDGFGEVLSWQAH-RGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (838)
Q Consensus 228 ~~~~~~~~~l~gH-~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 304 (838)
....+|.-- ...|.-+.|++..+ |.++|.+|+|.|||+....+.+... +.|. ....
T Consensus 154 ----~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~--~~Hs---------------AP~~ 212 (673)
T KOG4378|consen 154 ----QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS--EAHS---------------APCR 212 (673)
T ss_pred ----ccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh--hhcc---------------CCcC
Confidence 223334322 35677899999876 5799999999999997644322211 1111 1233
Q ss_pred ceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCC
Q 003217 305 GFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (838)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~ 383 (838)
|+|+.|+.+ ..+++.+ |..|.+||........++..
T Consensus 213 gicfspsne----------~l~vsVG~Dkki~~yD~~s~~s~~~l~y--------------------------------- 249 (673)
T KOG4378|consen 213 GICFSPSNE----------ALLVSVGYDKKINIYDIRSQASTDRLTY--------------------------------- 249 (673)
T ss_pred cceecCCcc----------ceEEEecccceEEEeecccccccceeee---------------------------------
Confidence 444433332 3444444 57889999875544322211
Q ss_pred cceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCCC--CeeeEeecCCc
Q 003217 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNG--NRLQDFQYLPF 460 (838)
Q Consensus 384 ~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g--~~l~tl~~H~~ 460 (838)
.....+|+|+++|. |+.|+..|.|..||+.+ ..+.++..|..
T Consensus 250 -----------------------------------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~ 294 (673)
T KOG4378|consen 250 -----------------------------------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA 294 (673)
T ss_pred -----------------------------------cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc
Confidence 01234688999998 77888999999999954 67899999999
Q ss_pred cEEEEEEcCC-EEEE
Q 003217 461 AVQCLCTFGS-QIWV 474 (838)
Q Consensus 461 ~V~sls~dG~-~Las 474 (838)
.|++|++.-. .++.
T Consensus 295 sVt~vafq~s~tvlt 309 (673)
T KOG4378|consen 295 SVTRVAFQPSPTVLT 309 (673)
T ss_pred ceeEEEeeecceeee
Confidence 9999987533 4443
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-08 Score=109.31 Aligned_cols=128 Identities=19% Similarity=0.325 Sum_probs=89.6
Q ss_pred eeEEEEecCC---EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeec-CCCCeEEEEEcCCCCEEEE
Q 003217 134 FLRTIVCTEE---QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK-GVSSVMCMVGDEASGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~~~---~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~~~V~~la~s~dg~~LaS 208 (838)
++..+.+..+ .|.+ |.|..||+|-+......+. ...--|...+. |+.+|+++.|+|+|.+|||
T Consensus 15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~------------~~~V~y~s~Ls~H~~aVN~vRf~p~gelLAS 82 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG------------DMKVEYLSSLSRHTRAVNVVRFSPDGELLAS 82 (434)
T ss_pred ceEEEEeccCcccceecccCccceeeeeeeecCCCCC------------ceeEEEeecccCCcceeEEEEEcCCcCeeee
Confidence 4555555433 3343 6799999999865443321 00111222232 2889999999999999999
Q ss_pred EeCCCcEEEEECCCCc---cCC-----CCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcc
Q 003217 209 GHRDGRIMCWKMNARL---LDS-----DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~---~~~-----~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~ 273 (838)
|+.+|.|.+|....-. ++. ...+.....+.+|...|..++++||+. +++||.|+++++||+..+.
T Consensus 83 g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 83 GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred cCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce
Confidence 9999999999876210 000 111233456789999999999999998 7899999999999997654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.9e-10 Score=120.05 Aligned_cols=275 Identities=17% Similarity=0.202 Sum_probs=173.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-ccccccEEEEEEecCC---CEEEeeCCCcEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYG---DLWSGSEGGGIKI 266 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG---~L~SgS~DgtIrv 266 (838)
.+-|..|-|...|..|+|||.|.+|.+||...+ ...+.+ .||...|..-.|-|.. .|++++.||.||+
T Consensus 142 ~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~--------~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 142 KGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSG--------SPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred CCccceeeecccCceeeccCccceEEeehhhcc--------CcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 778999999999999999999999999999887 445555 5898888888887753 4999999999998
Q ss_pred EECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeC-CCcEEEEeccCccE
Q 003217 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTREL 344 (838)
Q Consensus 267 Wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~~tI~lWD~~tg~~ 344 (838)
=.+....+.-.... +.-| .+.+..++..+... .+.+++ +..+.=.|++++..
T Consensus 214 s~i~~t~~~e~t~r----------------l~~h----------~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~p 267 (559)
T KOG1334|consen 214 SEILETGYVENTKR----------------LAPH----------EGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVP 267 (559)
T ss_pred eeeccccceeccee----------------cccc----------cCccceeeecCCCCCcccccccccceeeeeeccCCc
Confidence 66533111100000 0001 33455556555443 333433 56677778877655
Q ss_pred EEEEecCCceEE-eeecccCcccccccceeeEEEecCCCCcceeeeeEeecCc-ceeeecCCcEEEEec------c----
Q 003217 345 LKVFNIDGQIEN-RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAA------K---- 412 (838)
Q Consensus 345 l~~l~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~-~~~~g~~~~v~~v~~------~---- 412 (838)
...+.....-.. ++.+. +++..+... ...+|..+...|+.. .
T Consensus 268 a~~~~cr~~~~~~~v~L~--------------------------~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~ 321 (559)
T KOG1334|consen 268 AEKFVCREADEKERVGLY--------------------------TIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG 321 (559)
T ss_pred cceeeeeccCCccceeee--------------------------eEecCCCCccccccCChhhhhhhhcccchhhccccc
Confidence 333321000000 00000 001111110 111222221111111 0
Q ss_pred --Cccc------cCCCceEEEEEcCCCc-EEEEECCCeEEEEcCC---C----------CeeeE-eecCCc--cEEEEEE
Q 003217 413 --GGFG------DDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN---G----------NRLQD-FQYLPF--AVQCLCT 467 (838)
Q Consensus 413 --g~~~------~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~---g----------~~l~t-l~~H~~--~V~sls~ 467 (838)
..|. ...-.|++++++.++. |++.-.|.-|.++.-+ | ..++. ++||.+ .|..+.+
T Consensus 322 ~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNF 401 (559)
T KOG1334|consen 322 VLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNF 401 (559)
T ss_pred hhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeee
Confidence 0111 2334678899996665 7666678789999642 4 22333 788876 4667777
Q ss_pred cC---CEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEeCCC--EEEEEcCCCCeeeeec
Q 003217 468 FG---SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAG--YIFTLANHGGIRGWNV 525 (838)
Q Consensus 468 dG---~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~--~l~S~S~DgtIrlWdl 525 (838)
-| .+++|||.-|.|-+||-. +++++-+.|-...|+||.+++- .|+|.+-|.-||||.-
T Consensus 402 fGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 402 FGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred ccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 66 599999999999999987 6889999998889999998776 5889999999999984
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-09 Score=122.89 Aligned_cols=208 Identities=13% Similarity=0.061 Sum_probs=126.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEE-eeCCCcEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDG---RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS-GSEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DG---tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S-gS~DgtIr 265 (838)
..+|.+.+|+|||+.|+..+.++ .|.+||+.++. .+.+..+.+|. .+++|+|||+ |+. .+.||.++
T Consensus 203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~------~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA------RKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc------eEEEecCCCcc---CceeECCCCCEEEEEEecCCcEE
Confidence 55789999999999999887653 69999998862 12233355554 3679999998 654 45788887
Q ss_pred EEEC--CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccC
Q 003217 266 IWPW--EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDART 341 (838)
Q Consensus 266 vWd~--~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~t 341 (838)
||.+ .++. ...++. + ...+.....++++..++.++ ++...||++..
T Consensus 274 Iy~~d~~~~~-~~~lt~-------------------~----------~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 274 IYVMGANGGT-PSQLTS-------------------G----------AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred EEEEECCCCC-eEeecc-------------------C----------CCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 7754 3321 111110 0 11223345566666555443 24566666432
Q ss_pred ccE-EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCC
Q 003217 342 REL-LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (838)
Q Consensus 342 g~~-l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~ 420 (838)
... ...+ + +..
T Consensus 324 ~~~~~~~l----------------------------------------------------~----------------~~~ 335 (429)
T PRK01742 324 SGGGASLV----------------------------------------------------G----------------GRG 335 (429)
T ss_pred CCCCeEEe----------------------------------------------------c----------------CCC
Confidence 110 0000 0 000
Q ss_pred ceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEe---CCCccccccc
Q 003217 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLD---LEGNLLGGWV 495 (838)
Q Consensus 421 ~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD---~~g~~i~~l~ 495 (838)
..+.++|||+ |+.++.++ +.+||+ +|+.......+...-.++++||++|+.++.++.+++|+ .+|+.++.+.
T Consensus 336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred --CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 1234678887 66666666 556998 56544322222222224678999999999999888776 4588889999
Q ss_pred ccccCEEEEEeCC
Q 003217 496 AHSSPVIKMAVGA 508 (838)
Q Consensus 496 gH~~~V~sla~dg 508 (838)
+|.+.+...++.+
T Consensus 413 ~~~g~~~~p~wsp 425 (429)
T PRK01742 413 GSDGQVKFPAWSP 425 (429)
T ss_pred CCCCCCCCcccCC
Confidence 9988877766554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.4e-09 Score=117.71 Aligned_cols=266 Identities=17% Similarity=0.170 Sum_probs=161.9
Q ss_pred eeEEEEe--cCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 134 FLRTIVC--TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 134 ~~~~l~~--~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
++..++. ++.+|....++.+.+||..++... .|++. | ...|+||+++.||+++|||+.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~ll-----------------qtLKg--H-KDtVycVAys~dGkrFASG~a 73 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLL-----------------QPLKG--H-KDTVYCVAYAKDGKRFASGSA 73 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccc-----------------ccccc--c-cceEEEEEEccCCceeccCCC
Confidence 5666654 577999999999999998764322 12222 3 678999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
|..|.+|+..-. -++. -.|.+.|.||.|.|-.+ |+|+|-. -.-+|..+.. .+.-
T Consensus 74 DK~VI~W~~klE---------G~Lk-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK--~V~K------------ 128 (1081)
T KOG1538|consen 74 DKSVIIWTSKLE---------GILK-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK--SVSK------------ 128 (1081)
T ss_pred ceeEEEeccccc---------ceee-eccCCeeeEeecCchHHHhhhcchh-hccccChhhh--hHHh------------
Confidence 999999985431 1222 36999999999999776 8888853 2457876431 1100
Q ss_pred eeceeecccceeccce-eeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccE-EEEEec--CCceEEeeecccCccc
Q 003217 291 ERSYIDLRSHLSVNGF-SSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTREL-LKVFNI--DGQIENRVDMSLLPDF 366 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~-~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~-l~~l~~--~~~~~~~~~~s~~~~~ 366 (838)
+.....+ +..-+++...++.+.. ++||.|-+. +|+. ++.-.+ +...++++..++....
T Consensus 129 ---------~kss~R~~~CsWtnDGqylalG~~--------nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~ 190 (1081)
T KOG1538|consen 129 ---------HKSSSRIICCSWTNDGQYLALGMF--------NGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGE 190 (1081)
T ss_pred ---------hhhheeEEEeeecCCCcEEEEecc--------CceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCC
Confidence 0000011 1112333334443332 467776654 3433 222221 2222333333332222
Q ss_pred ccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCC----CceEEEEEcCCCc-EEEEECCCe
Q 003217 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN----RRTEALTTSIDGM-IWTGGANGL 441 (838)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~----~~v~ala~S~dg~-l~Sgs~Dgt 441 (838)
..++.+-+..|+. ++.|+.- .|++.+.. -...++.+=++|. ++.|+.|+.
T Consensus 191 G~~di~aV~DW~q--------TLSFy~L-----------------sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 191 GRNDILAVADWGQ--------TLSFYQL-----------------SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ 245 (1081)
T ss_pred CccceEEEEeccc--------eeEEEEe-----------------cceeecccccCCCCchhheeccCCcEEEEccCCCc
Confidence 2221111111111 2333321 22222211 1122455446665 888999999
Q ss_pred EEEEcCCCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC
Q 003217 442 LLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 442 IrlWD~~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (838)
++++..+|-++.|+.....+|+++. ++++.++.|..||||-.+++.
T Consensus 246 L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 246 LSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred eEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 9999999999999988888999985 578999999999999999964
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.8e-09 Score=109.61 Aligned_cols=114 Identities=17% Similarity=0.261 Sum_probs=85.0
Q ss_pred eeEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCc--eeeecCCCCeEEEEEcCCCCEEEE
Q 003217 134 FLRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPF--KESVKGVSSVMCMVGDEASGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~~~-~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~g~~~V~~la~s~dg~~LaS 208 (838)
|+.+|..+.+ ++.+ |.|-.++||++++...... ..|+ .++-| .+.|+||+|+..++.|+|
T Consensus 58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~--------------~KPI~~~~~~H-~SNIF~L~F~~~N~~~~S 122 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT--------------PKPIGVMEHPH-RSNIFSLEFDLENRFLYS 122 (609)
T ss_pred ccceeeeccCCeEEeecCCcceeeeechHHHHhhcC--------------CCCceeccCcc-ccceEEEEEccCCeeEec
Confidence 6777877644 5544 3467999999976543211 1222 22222 689999999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccc---ccEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR---GPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~---~~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
|..+++|.+-|+++. +.+-..+|. +.|+.|..+|-.. |++.+.++.|-+||...
T Consensus 123 G~~~~~VI~HDiEt~---------qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 123 GERWGTVIKHDIETK---------QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD 180 (609)
T ss_pred CCCcceeEeeecccc---------eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccC
Confidence 999999999999984 333344554 5999999999765 78999999999999854
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-08 Score=122.05 Aligned_cols=250 Identities=15% Similarity=0.209 Sum_probs=145.5
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
.+.|..++.++.. .+++|||.||+||+|++..-.++ ....+...++.--.+.|..+.+.+.|+ ++.|+.||.|++-+
T Consensus 1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~-~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE-GGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR 1126 (1431)
T ss_pred cccccceeecCCCCceEEEecCCceEEEeeehhhhcC-cceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEE
Confidence 6677788887654 99999999999999997542110 012233445544467899999999887 88889999999999
Q ss_pred CCCc--ceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC-CC--CEEEEeCCCcEEEEeccCcc
Q 003217 269 WEAI--EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SR--AKVWSAGFLSFALWDARTRE 343 (838)
Q Consensus 269 ~~~~--~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~--~~V~s~s~~tI~lWD~~tg~ 343 (838)
++.. .+.. .. .....-+-.++.+ +.+-++.. .+ ..|+......|..||+++..
T Consensus 1127 id~~~~~~~~-~~--~~ri~n~~~~g~v-------------------v~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1127 IDHYNVSKRV-AT--QVRIPNLKKDGVV-------------------VSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred ccccccccce-ee--eeecccccCCCce-------------------EEeecccccccceeEEEEEeccceEEecchhhh
Confidence 8651 1100 00 0000000000001 11111111 11 12223334567788876533
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceE
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (838)
.+.+++ +....+.|.
T Consensus 1185 ~~w~lk-----------------------------------------------------------------~~~~hG~vT 1199 (1431)
T KOG1240|consen 1185 DAWRLK-----------------------------------------------------------------NQLRHGLVT 1199 (1431)
T ss_pred hHHhhh-----------------------------------------------------------------cCcccccee
Confidence 211110 111234567
Q ss_pred EEEEcCCCc-EEEEECCCeEEEEcCC-CCeeeEee-cCCccEEEEE--E-cC--CEEEEEe--eCCeEEEEeCC-Ccccc
Q 003217 424 ALTTSIDGM-IWTGGANGLLLQWDPN-GNRLQDFQ-YLPFAVQCLC--T-FG--SQIWVGY--MNGIVQVLDLE-GNLLG 492 (838)
Q Consensus 424 ala~S~dg~-l~Sgs~DgtIrlWD~~-g~~l~tl~-~H~~~V~sls--~-dG--~~LasGs--~DgtIrlWD~~-g~~i~ 492 (838)
+++.+|.+. +++|+..|.+.+||+. +..+.... ++..+|+-+. + -+ ..+++++ ..+-|.+|+.+ |.+..
T Consensus 1200 Si~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred EEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE
Confidence 888899888 7899999999999994 55555544 3445666553 3 23 4555555 46889999987 54433
Q ss_pred ccccc-----------cc------C---EEE-EEeCCCEEEEEcCCCCeeeeecCCC
Q 003217 493 GWVAH-----------SS------P---VIK-MAVGAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 493 ~l~gH-----------~~------~---V~s-la~dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
++... .+ . +.+ +...+..+++|+.|..||.||...|
T Consensus 1280 vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1280 VLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred EEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 33222 11 1 111 1123456889999999999997654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.5e-08 Score=100.67 Aligned_cols=260 Identities=14% Similarity=0.140 Sum_probs=152.9
Q ss_pred CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003217 142 EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (838)
Q Consensus 142 ~~~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~ 220 (838)
+..|..| .||.|-+||+.+...... +.. | ..||.|+++|+||+.|.|+|.|..|++||+
T Consensus 35 G~~lAvGc~nG~vvI~D~~T~~iar~-----------------lsa--H-~~pi~sl~WS~dgr~LltsS~D~si~lwDl 94 (405)
T KOG1273|consen 35 GDYLAVGCANGRVVIYDFDTFRIARM-----------------LSA--H-VRPITSLCWSRDGRKLLTSSRDWSIKLWDL 94 (405)
T ss_pred cceeeeeccCCcEEEEEccccchhhh-----------------hhc--c-ccceeEEEecCCCCEeeeecCCceeEEEec
Confidence 4455554 599999999987543221 222 3 669999999999999999999999999999
Q ss_pred CCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCcEEEEECCCcce-eeecCCCceeeeEEEEeeceeec
Q 003217 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEK-ALSLKPEERHTAALIVERSYIDL 297 (838)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l 297 (838)
..|. ..+++ .| ..+|+.+.|.|-.+ . +..-.+..--+-++..... .+...
T Consensus 95 ~~gs-----~l~ri-rf---~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d------------------ 147 (405)
T KOG1273|consen 95 LKGS-----PLKRI-RF---DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKD------------------ 147 (405)
T ss_pred cCCC-----ceeEE-Ec---cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCC------------------
Confidence 9873 11221 12 57899999988543 2 2222222222222211000 00000
Q ss_pred ccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEE
Q 003217 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (838)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (838)
..+.... .-.+..++..|..|.+|.. +-+.++|+.|-+++..|.....
T Consensus 148 ----~d~dln~----sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~----------------------- 196 (405)
T KOG1273|consen 148 ----DDGDLNS----SASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSV----------------------- 196 (405)
T ss_pred ----Ccccccc----ccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechh-----------------------
Confidence 0000000 0111234556777888876 4688999999888777653220
Q ss_pred EecCCCCcceeeeeEeecCcceeeecCCcEEEEecc---------Cccc------cCCCce--EEEEEcCCCc-EEEEE-
Q 003217 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK---------GGFG------DDNRRT--EALTTSIDGM-IWTGG- 437 (838)
Q Consensus 377 ~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~---------g~~~------~~~~~v--~ala~S~dg~-l~Sgs- 437 (838)
..+..+-+..+++..++.+.|-+.|.... +... .-..+. ..+.||.||. +..|+
T Consensus 197 -------~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~ 269 (405)
T KOG1273|consen 197 -------QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA 269 (405)
T ss_pred -------eeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccc
Confidence 01112344555566677777777766531 1111 001111 2477899997 43333
Q ss_pred CCCeEEEEcC-CCCeeeEeecCC-ccEEEEEEcC--CEEEEEeeCCeEEEEeCC
Q 003217 438 ANGLLLQWDP-NGNRLQDFQYLP-FAVQCLCTFG--SQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 438 ~DgtIrlWD~-~g~~l~tl~~H~-~~V~sls~dG--~~LasGs~DgtIrlWD~~ 487 (838)
....+.+|.- .|..++.+.|.. .....+..+. ..|++- ..|.|++|...
T Consensus 270 ~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 270 RAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred cceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 4568999999 799999998866 3444555443 234443 67899999854
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.8e-09 Score=118.78 Aligned_cols=207 Identities=11% Similarity=-0.039 Sum_probs=123.3
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCC---CcEEEEECCCcceeeecCCCceeee
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG---GGIKIWPWEAIEKALSLKPEERHTA 286 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D---gtIrvWd~~~~~~~~~~~~~~~~~~ 286 (838)
.+..|.+||.++. ....+..|...|.+.+|||||+ |+.++.+ ..|.+||+.+++.... ..
T Consensus 182 ~~~~i~i~d~dg~---------~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~------ 245 (429)
T PRK01742 182 QPYEVRVADYDGF---------NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-AS------ 245 (429)
T ss_pred ceEEEEEECCCCC---------CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ec------
Confidence 3578999998774 3455678888999999999998 7665543 4799999976532110 00
Q ss_pred EEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCc--EEEEeccCccEEEEEecCCceEEeeeccc
Q 003217 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLS--FALWDARTRELLKVFNIDGQIENRVDMSL 362 (838)
Q Consensus 287 ~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~t--I~lWD~~tg~~l~~l~~~~~~~~~~~~s~ 362 (838)
+.++ ....+.++++.+|+.+. ++. |.+||+.+++.. .+..
T Consensus 246 ----------~~g~-------------~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt~------------ 289 (429)
T PRK01742 246 ----------FRGH-------------NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS-QLTS------------ 289 (429)
T ss_pred ----------CCCc-------------cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE-eecc------------
Confidence 0000 11244566666555432 333 444566555431 1110
Q ss_pred CcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEE-CCC
Q 003217 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANG 440 (838)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs-~Dg 440 (838)
+...+..+.++|||. |+.++ .++
T Consensus 290 -------------------------------------------------------~~~~~~~~~wSpDG~~i~f~s~~~g 314 (429)
T PRK01742 290 -------------------------------------------------------GAGNNTEPSWSPDGQSILFTSDRSG 314 (429)
T ss_pred -------------------------------------------------------CCCCcCCEEECCCCCEEEEEECCCC
Confidence 001122456888887 55444 567
Q ss_pred eEEEEcC--CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEeCCCEEEEEcCC
Q 003217 441 LLLQWDP--NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAGYIFTLANH 517 (838)
Q Consensus 441 tIrlWD~--~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~~l~S~S~D 517 (838)
...||++ .+...+.+ .+.....++++||++|+.++.++ |.+||+. |+.......+...-.+.++||++++.++.+
T Consensus 315 ~~~I~~~~~~~~~~~~l-~~~~~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 315 SPQVYRMSASGGGASLV-GGRGYSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred CceEEEEECCCCCeEEe-cCCCCCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcC
Confidence 8888876 34333333 33332234577999998887765 4559987 443221122222222356799999999999
Q ss_pred CCeeeeecC
Q 003217 518 GGIRGWNVT 526 (838)
Q Consensus 518 gtIrlWdl~ 526 (838)
+++++|.+.
T Consensus 393 g~~~~l~~~ 401 (429)
T PRK01742 393 GLGKVLQLV 401 (429)
T ss_pred CCceEEEEE
Confidence 999999864
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.5e-08 Score=114.91 Aligned_cols=110 Identities=20% Similarity=0.212 Sum_probs=90.7
Q ss_pred CCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeee-EeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCCCcccccc
Q 003217 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQ-DFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGW 494 (838)
Q Consensus 418 ~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~-tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~g~~i~~l 494 (838)
|.+.+-++.++.||. ++|.|+|.++|+|++ +++.+. +.-+|+.+|..+.+...+|++++.|.+.++|+.+++.+.++
T Consensus 174 HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~~~l~~y 253 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNGTQLEVY 253 (967)
T ss_pred cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEecccceehhh
Confidence 334444667778887 899999999999999 666555 66789999999888666999999999999999998888899
Q ss_pred ccccc-CEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 495 VAHSS-PVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 495 ~gH~~-~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
.+|.. .|+.++. +.-.++|++.|+++|+|++..
T Consensus 254 ~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 254 DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99976 5888874 334678999999999999643
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4e-08 Score=117.19 Aligned_cols=164 Identities=19% Similarity=0.202 Sum_probs=99.9
Q ss_pred EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003217 144 QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (838)
Q Consensus 144 ~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~ 221 (838)
.+++ |.||+||+||+.+....+. ..|.. .+++.. .+.+.++..-+.|..+|.|++||.|++.+++
T Consensus 1062 s~FvsgS~DGtVKvW~~~k~~~~~~------s~rS~------ltys~~-~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEGG------SARSE------LTYSPE-GSRVEKVTMCGNGDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred ceEEEecCCceEEEeeehhhhcCcc------eeeee------EEEecc-CCceEEEEeccCCCeEEEEcCCCeEEEEEcc
Confidence 4554 5699999999976443211 01111 223323 6789999999999999999999999999987
Q ss_pred CCccCCCCCcceeEEeccc-cccEEEE-EEecCC-C--EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceee
Q 003217 222 ARLLDSDDGFGEVLSWQAH-RGPVLSL-CISSYG-D--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (838)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH-~~~V~sl-afs~dG-~--L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 296 (838)
--.. ......+.+....| .+.|.+| +|.... . |+-+..-+.|-.||+.......++.....
T Consensus 1129 ~~~~-~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~------------- 1194 (1431)
T KOG1240|consen 1129 HYNV-SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR------------- 1194 (1431)
T ss_pred cccc-ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc-------------
Confidence 6210 00001112222233 3445544 454432 2 56677778899999865433333222111
Q ss_pred cccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEE
Q 003217 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVF 348 (838)
Q Consensus 297 l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l 348 (838)
++-+..++.++.+..+..|+. +.+.+||++=+.++...
T Consensus 1195 --------------hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1195 --------------HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW 1233 (1431)
T ss_pred --------------ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc
Confidence 345777888887777777775 56789999877766544
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-08 Score=104.06 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=82.6
Q ss_pred cCCCceEEEEEcCCCc--EEEEECCCeEEEEcCCCCeeeEe--ec--CCccEEEEEE---cCCEEEEEee-CCeEEEEeC
Q 003217 417 DDNRRTEALTTSIDGM--IWTGGANGLLLQWDPNGNRLQDF--QY--LPFAVQCLCT---FGSQIWVGYM-NGIVQVLDL 486 (838)
Q Consensus 417 ~~~~~v~ala~S~dg~--l~Sgs~DgtIrlWD~~g~~l~tl--~~--H~~~V~sls~---dG~~LasGs~-DgtIrlWD~ 486 (838)
.|.+.|..++|+.++. ++|.+.||.||++|+....-.|+ +. ...+..-++. |.+++|+-.. ...|.+.|+
T Consensus 194 AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi 273 (364)
T KOG0290|consen 194 AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI 273 (364)
T ss_pred ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence 3455667778877665 78999999999999943222222 22 1335555654 4567776544 568999998
Q ss_pred C--CcccccccccccCEEEEEe---CCCEEEEEcCCCCeeeeecCC
Q 003217 487 E--GNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 487 ~--g~~i~~l~gH~~~V~sla~---dg~~l~S~S~DgtIrlWdl~s 527 (838)
. ...+..|.+|.+.|++|++ ....|.|+|.|..+-+||+..
T Consensus 274 R~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 274 RVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred cCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 7 6789999999999999996 456899999999999999865
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.8e-09 Score=113.86 Aligned_cols=198 Identities=20% Similarity=0.213 Sum_probs=124.2
Q ss_pred EEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCC
Q 003217 245 LSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR 323 (838)
Q Consensus 245 ~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~ 323 (838)
..|+|+.+|. |++|+.||++|||++......+... .| ..+|+.+.+++++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~-------------------~~----------~~eV~DL~FS~dg 198 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI-------------------AH----------HAEVKDLDFSPDG 198 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH-------------------hh----------cCccccceeCCCC
Confidence 6789999986 7899999999999986533222111 11 5678999999999
Q ss_pred CEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecC
Q 003217 324 AKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA 403 (838)
Q Consensus 324 ~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~ 403 (838)
..|++.+....+||++.+|.++..+.+.+.. -......|..+ .+.
T Consensus 199 k~lasig~d~~~VW~~~~g~~~a~~t~~~k~-----------------------------~~~~~cRF~~d------~~~ 243 (398)
T KOG0771|consen 199 KFLASIGADSARVWSVNTGAALARKTPFSKD-----------------------------EMFSSCRFSVD------NAQ 243 (398)
T ss_pred cEEEEecCCceEEEEeccCchhhhcCCcccc-----------------------------hhhhhceeccc------CCC
Confidence 8888877669999999999766554321110 00001122211 001
Q ss_pred CcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcCCCCee--eEeecCCccEEEEEE--cCCEEEEEeeCC
Q 003217 404 DAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRL--QDFQYLPFAVQCLCT--FGSQIWVGYMNG 479 (838)
Q Consensus 404 ~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~~g~~l--~tl~~H~~~V~sls~--dG~~LasGs~Dg 479 (838)
...++. +. ..|.+.+.. + .+.+|+-. +.+ ++...-.+.|.++++ +|++++.|+.||
T Consensus 244 -~~l~la-------------a~-~~~~~~v~~-~---~~~~w~~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 244 -ETLRLA-------------AS-QFPGGGVRL-C---DISLWSGS-NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred -ceEEEE-------------Ee-cCCCCceeE-E---Eeeeeccc-cccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 111111 00 011111111 1 23444442 221 222222346777654 799999999999
Q ss_pred eEEEEeCCC-c-ccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecC
Q 003217 480 IVQVLDLEG-N-LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 480 tIrlWD~~g-~-~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~ 526 (838)
.|-|+++.. + +...-.+|...|++|.+ |.+++++.|.|.++++-.+.
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 999999873 3 35566799999999984 77899999999999887764
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-07 Score=103.74 Aligned_cols=244 Identities=10% Similarity=0.102 Sum_probs=136.1
Q ss_pred EecCCEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC-CCcE
Q 003217 139 VCTEEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR-DGRI 215 (838)
Q Consensus 139 ~~~~~~l~~g--~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~-DGtI 215 (838)
..+++.|+++ .++.|.+|++...-.... ....+ . .+....++++|+|+.|+++++ ++.|
T Consensus 43 spd~~~lyv~~~~~~~i~~~~~~~~g~l~~------------~~~~~-----~-~~~p~~i~~~~~g~~l~v~~~~~~~v 104 (330)
T PRK11028 43 SPDKRHLYVGVRPEFRVLSYRIADDGALTF------------AAESP-----L-PGSPTHISTDHQGRFLFSASYNANCV 104 (330)
T ss_pred CCCCCEEEEEECCCCcEEEEEECCCCceEE------------eeeec-----C-CCCceEEEECCCCCEEEEEEcCCCeE
Confidence 3356677775 368999999852100000 00001 1 223567999999999998875 8899
Q ss_pred EEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeec
Q 003217 216 MCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (838)
Q Consensus 216 rvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (838)
.+|++++.. ...+....+.++ ....+++|+|+|+ | ++...++.|++||+++... +... ......
T Consensus 105 ~v~~~~~~g----~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~-l~~~--~~~~~~------ 170 (330)
T PRK11028 105 SVSPLDKDG----IPVAPIQIIEGL-EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH-LVAQ--EPAEVT------ 170 (330)
T ss_pred EEEEECCCC----CCCCceeeccCC-CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc-cccc--CCCcee------
Confidence 999997420 111122223332 3457789999998 5 4666789999999965221 1100 000000
Q ss_pred eeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccC--ccEEEEEecCCceEEeeecccCcccccc
Q 003217 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDART--RELLKVFNIDGQIENRVDMSLLPDFAME 369 (838)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~t--g~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (838)
. .. ....+.+++++++..++++. +++|.+||+.. ++. .....
T Consensus 171 ---~----~~-------g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~-~~~~~------------------- 216 (330)
T PRK11028 171 ---T----VE-------GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI-ECVQT------------------- 216 (330)
T ss_pred ---c----CC-------CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE-EEEEE-------------------
Confidence 0 00 11234567778888887775 47899999873 332 11100
Q ss_pred cceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEE-CCCeEEEEcC
Q 003217 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP 447 (838)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs-~DgtIrlWD~ 447 (838)
+... +. .+. .......+.++|||+ ++++. .+++|.+|++
T Consensus 217 -------~~~~------------p~-------------------~~~-~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 217 -------LDMM------------PA-------------------DFS-DTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred -------EecC------------CC-------------------cCC-CCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 0000 00 000 001122467889987 66654 4689999998
Q ss_pred -C-CCe---eeEeecCC-ccEEEEEEcCCEEEEEee-CCeEEEEeCC
Q 003217 448 -N-GNR---LQDFQYLP-FAVQCLCTFGSQIWVGYM-NGIVQVLDLE 487 (838)
Q Consensus 448 -~-g~~---l~tl~~H~-~~V~sls~dG~~LasGs~-DgtIrlWD~~ 487 (838)
+ +.. ++...... -.-..+.+||++|+++.. +++|.+|+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 258 SEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 2 322 22222111 111245678999998775 8999999863
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-07 Score=108.91 Aligned_cols=211 Identities=10% Similarity=0.014 Sum_probs=121.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EE-EeeCCC--c
Q 003217 191 VSSVMCMVGDEASGVVWSGHR---DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGG--G 263 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~---DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~Dg--t 263 (838)
...+.+.+|+|||+.|+..+. +..|.+|++.++. .+.+..+.+| +.+++|||||+ |+ +.+.++ .
T Consensus 198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~------~~~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~ 268 (429)
T PRK03629 198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA------VRQVASFPRH---NGAPAFSPDGSKLAFALSKTGSLN 268 (429)
T ss_pred CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC------eEEccCCCCC---cCCeEECCCCCEEEEEEcCCCCcE
Confidence 457899999999998886553 3478999998862 0222233444 45689999998 54 555555 4
Q ss_pred EEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC--Cc--EEEEec
Q 003217 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LS--FALWDA 339 (838)
Q Consensus 264 IrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~--~t--I~lWD~ 339 (838)
|.+||+++++.. .++.. .........++++..|+..++ +. |.++|+
T Consensus 269 I~~~d~~tg~~~-~lt~~-----------------------------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 269 LYVMDLASGQIR-QVTDG-----------------------------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred EEEEECCCCCEE-EccCC-----------------------------CCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 888888664321 11110 001223344556655544332 22 333455
Q ss_pred cCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCC
Q 003217 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (838)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (838)
.+++.. .+... .
T Consensus 319 ~~g~~~-~lt~~-------------------------------------------------------------------~ 330 (429)
T PRK03629 319 NGGAPQ-RITWE-------------------------------------------------------------------G 330 (429)
T ss_pred CCCCeE-EeecC-------------------------------------------------------------------C
Confidence 444321 11000 0
Q ss_pred CceEEEEEcCCCc-EEEEECC---CeEEEEcCCCCeeeEeec-CCccEEEEEEcCCEEEEEeeCCe---EEEEeCCCccc
Q 003217 420 RRTEALTTSIDGM-IWTGGAN---GLLLQWDPNGNRLQDFQY-LPFAVQCLCTFGSQIWVGYMNGI---VQVLDLEGNLL 491 (838)
Q Consensus 420 ~~v~ala~S~dg~-l~Sgs~D---gtIrlWD~~g~~l~tl~~-H~~~V~sls~dG~~LasGs~Dgt---IrlWD~~g~~i 491 (838)
.......++|||. |+..+.+ ..|.+||+.+...+.++. +...--++++||++|+.++.++. +.+|+++|+..
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~ 410 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 410 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe
Confidence 0011345778876 5444332 358889994333344442 21222256789999998887764 77888988888
Q ss_pred ccccccccCEEEEEeCC
Q 003217 492 GGWVAHSSPVIKMAVGA 508 (838)
Q Consensus 492 ~~l~gH~~~V~sla~dg 508 (838)
+.+.+|.+.+...++.+
T Consensus 411 ~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 411 ARLPATDGQVKFPAWSP 427 (429)
T ss_pred EECccCCCCcCCcccCC
Confidence 88888888777655543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-08 Score=112.25 Aligned_cols=123 Identities=18% Similarity=0.212 Sum_probs=95.1
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvW 267 (838)
...|+.+.|+| |...||.|+.||.|++|.+..+.. ..+.-.....+.+|...|+++.|.|-.. |+++|.|.||++|
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl-~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL-PENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCC-CcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 56799999999 778999999999999999887521 1112223456789999999999999653 7899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCcc
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~ 343 (838)
|+.+.+...++. +| +..+..++-+++|.++++.. |++|+++..++++
T Consensus 706 Dl~~~~~~~~l~-------------------gH----------tdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 706 DLANAKLYSRLV-------------------GH----------TDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred ehhhhhhhheec-------------------cC----------cCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 998754333322 22 45677788889999988765 7899999988765
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.8e-08 Score=105.55 Aligned_cols=172 Identities=20% Similarity=0.239 Sum_probs=110.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCC
Q 003217 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPE 281 (838)
Q Consensus 203 g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~ 281 (838)
...++..+.||.+.+-+-.. +......+|.++|.+-.++|||. |+|+++||.||+|...+.-.+....
T Consensus 75 ~d~~~i~s~DGkf~il~k~~---------rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q-- 143 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSA---------RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQ-- 143 (737)
T ss_pred cceEEEEcCCceEEEecccc---------hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhh--
Confidence 35688889999998887655 33456789999999999999998 9999999999999974421110000
Q ss_pred ceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCE-EEEeCCCcEEEEeccCccEEEEEecCCceEEeeec
Q 003217 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAK-VWSAGFLSFALWDARTRELLKVFNIDGQIENRVDM 360 (838)
Q Consensus 282 ~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~-V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (838)
. ...+.|++-+++... |++.++ .+. ++-|.+...
T Consensus 144 ----------------------~------~~~v~c~~W~p~S~~vl~c~g~-h~~---------IKpL~~n~k------- 178 (737)
T KOG1524|consen 144 ----------------------N------EESIRCARWAPNSNSIVFCQGG-HIS---------IKPLAANSK------- 178 (737)
T ss_pred ----------------------c------CceeEEEEECCCCCceEEecCC-eEE---------Eeecccccc-------
Confidence 0 224666665554433 222221 111 111111110
Q ss_pred ccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECC
Q 003217 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGAN 439 (838)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~D 439 (838)
+.+ +..|.+-|.++.+++... ++||++|
T Consensus 179 ---------------------------------------------~i~------WkAHDGiiL~~~W~~~s~lI~sgGED 207 (737)
T KOG1524|consen 179 ---------------------------------------------IIR------WRAHDGLVLSLSWSTQSNIIASGGED 207 (737)
T ss_pred ---------------------------------------------eeE------EeccCcEEEEeecCccccceeecCCc
Confidence 000 112334455666766554 7899999
Q ss_pred CeEEEEcCCCCeeeEeecCCccEEEEEEcCC-EEEEEeeCCeEE
Q 003217 440 GLLLQWDPNGNRLQDFQYLPFAVQCLCTFGS-QIWVGYMNGIVQ 482 (838)
Q Consensus 440 gtIrlWD~~g~~l~tl~~H~~~V~sls~dG~-~LasGs~DgtIr 482 (838)
-..|+||.-|..+.+-..|..+|+++++... ..+.|| -.++|
T Consensus 208 ~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S-~nt~R 250 (737)
T KOG1524|consen 208 FRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWS-YNTAR 250 (737)
T ss_pred eeEEeecccCcccccCChhccceeeeeeccccceeeee-eeeee
Confidence 9999999999999888899999999987544 444444 34555
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.3e-08 Score=102.53 Aligned_cols=133 Identities=14% Similarity=0.205 Sum_probs=89.9
Q ss_pred cEEEEECCCeEEEEcCC--C-CeeeEeecCC-ccEEEEEE--cCCEEEEEee----CCeEEEEeCC--Ccccccc-cccc
Q 003217 432 MIWTGGANGLLLQWDPN--G-NRLQDFQYLP-FAVQCLCT--FGSQIWVGYM----NGIVQVLDLE--GNLLGGW-VAHS 498 (838)
Q Consensus 432 ~l~Sgs~DgtIrlWD~~--g-~~l~tl~~H~-~~V~sls~--dG~~LasGs~----DgtIrlWD~~--g~~i~~l-~gH~ 498 (838)
.+.||+.||+||+||+. + .....++.|+ .+-.|+.. .+..+++|+. +-.|.+||+. .++++.+ ..|.
T Consensus 86 ~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~ 165 (376)
T KOG1188|consen 86 GVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN 165 (376)
T ss_pred eeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc
Confidence 37899999999999993 3 2344555666 45556655 3567888773 7789999986 3445554 5899
Q ss_pred cCEEEEEe---CCCEEEEEcCCCCeeeeecCCCCCCchhhhhhhhccc----cccccccceeeEEEE-------EEeCCC
Q 003217 499 SPVIKMAV---GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKE----FLYTRMENLKILAGT-------WNVGQG 564 (838)
Q Consensus 499 ~~V~sla~---dg~~l~S~S~DgtIrlWdl~s~~~~d~~~~~~l~~r~----~~y~~~~~~~i~~~t-------wNv~~~ 564 (838)
+.|++|.+ +++.|+|||.||-|.++|+..... ++-+.+..+... .-+...+..+|++.| |+++.+
T Consensus 166 DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E-eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 166 DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE-EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred CcceeEEecCCCCCeEEeecccceEEeeecCCCcc-hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 99999986 677999999999999999876543 333333333222 122333334566555 666554
Q ss_pred C
Q 003217 565 R 565 (838)
Q Consensus 565 ~ 565 (838)
.
T Consensus 245 ~ 245 (376)
T KOG1188|consen 245 S 245 (376)
T ss_pred C
Confidence 4
|
|
| >KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.7e-09 Score=110.02 Aligned_cols=129 Identities=23% Similarity=0.374 Sum_probs=85.1
Q ss_pred ccCCCceeEEEEEEcCeEEEEEeccccCCcchH-----------HHHHHHHHHHHHhcCcCCCCCcccccccCCCceeee
Q 003217 673 AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV-----------NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQM 741 (838)
Q Consensus 673 ~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~-----------~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~ 741 (838)
.++.||-.-.||+|.+..|.|||.||-...+|+ ..|.+.+..++.+|.=.
T Consensus 153 ~~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~------------------- 213 (391)
T KOG1976|consen 153 ANQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEE------------------- 213 (391)
T ss_pred hhhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhh-------------------
Confidence 368899999999999999999999996555554 45777887787776311
Q ss_pred cccCCCCCCCcccCCCCcCcccEEEEeccceeeecCCChH------------------HHHHH---------------hh
Q 003217 742 LRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYD------------------EARDF---------------IS 788 (838)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~------------------~~~~~---------------i~ 788 (838)
. ...|.+|+|||||||++..+.- .+.+. |+
T Consensus 214 ----------------~-~~~~~~fVfGdfNfrLds~s~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~l~vE 276 (391)
T KOG1976|consen 214 ----------------G-LRNDAIFVFGDFNFRLDSTSLLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVTLTVE 276 (391)
T ss_pred ----------------c-cCceEEEEecccccccchHHHHHHHhcCCccchhhhcccCcceeeEEeecccCCceeEEEee
Confidence 1 2457999999999999952110 00011 11
Q ss_pred hcchHHHhhccchHHH--------HhcCCCcCC-cccCCCCCCCCCcccCCCCCccCCC
Q 003217 789 QRCFDWLRERDQLRAE--------MEAGNVFQG-MREADIKFPPTYKFEKHLAGLAGTL 838 (838)
Q Consensus 789 ~~~~~~Ll~~DQL~~~--------~~~~~~f~g-f~E~~I~F~PTYK~~~~~~~~~~~~ 838 (838)
++.|+ -..||-+... -++-..|+. +.|..|.|||||.|..+..+-..||
T Consensus 277 kk~FD-yfnh~~f~d~~r~~~~~~dkEl~nf~~kl~E~~i~FpPsypysed~~~~E~~m 334 (391)
T KOG1976|consen 277 KKRFD-YFNHDWFFDLGRGMVKRYDKELANFAFKLKEETIFFPPSYPYSEDDSGKEEFM 334 (391)
T ss_pred hhhcc-hhhhHHHHHcCchhhhhcchHHHHHHHHHhheeecCCCCCCCCcCccchHHHH
Confidence 22233 1122222110 011124444 8999999999999999998888776
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.6e-09 Score=113.57 Aligned_cols=130 Identities=18% Similarity=0.340 Sum_probs=108.0
Q ss_pred eeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEe-ecCCccEEEEEE----cCC
Q 003217 398 AIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF-QYLPFAVQCLCT----FGS 470 (838)
Q Consensus 398 ~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl-~~H~~~V~sls~----dG~ 470 (838)
+.+++..-++++.....+.+|.++|.+|.++.||. |+|||.|-.+.|||. .-+.++.+ +||..-|.|+.+ ..+
T Consensus 29 ~y~~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnr 108 (758)
T KOG1310|consen 29 IYMGNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNR 108 (758)
T ss_pred HhccccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCe
Confidence 34455556677776778899999999999999998 789999999999999 66776665 589999999865 345
Q ss_pred EEEEEeeCCeEEEEeCCC-----------cccccccccccCEEEEEe--C-CCEEEEEcCCCCeeeeecCC
Q 003217 471 QIWVGYMNGIVQVLDLEG-----------NLLGGWVAHSSPVIKMAV--G-AGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 471 ~LasGs~DgtIrlWD~~g-----------~~i~~l~gH~~~V~sla~--d-g~~l~S~S~DgtIrlWdl~s 527 (838)
.|++|..|..|+|+|+.. ..++.|..|++.|..|+. + +..++|+|.||+||-.|++-
T Consensus 109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 889999999999999751 247789999999999984 3 46799999999999999875
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.3e-07 Score=103.84 Aligned_cols=74 Identities=12% Similarity=0.013 Sum_probs=54.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCC--c
Q 003217 191 VSSVMCMVGDEASGVVWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGG--G 263 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~D---GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~Dg--t 263 (838)
...+.+.+|+|||+.|+..+.+ ..|.+||+.++. ...+..+.+.+.+++|+|||+ | ++.+.++ .
T Consensus 203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~---------~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ---------RELVASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC---------EEEeccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 4578899999999999988754 369999998862 223334445556789999997 5 4666666 5
Q ss_pred EEEEECCCcc
Q 003217 264 IKIWPWEAIE 273 (838)
Q Consensus 264 IrvWd~~~~~ 273 (838)
|.+||+.+++
T Consensus 274 Iy~~d~~~g~ 283 (433)
T PRK04922 274 IYVMDLGSRQ 283 (433)
T ss_pred EEEEECCCCC
Confidence 8888886643
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.2e-08 Score=97.90 Aligned_cols=257 Identities=14% Similarity=0.154 Sum_probs=137.8
Q ss_pred eeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecC
Q 003217 233 EVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTS 312 (838)
Q Consensus 233 ~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~ 312 (838)
....+++|.+.|+++.|..+++|.+|..-|.|++|++.+......+. .++ ..
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r-------------------~~g---------~~ 57 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIR-------------------LFG---------RL 57 (323)
T ss_pred CeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhh-------------------hhc---------cc
Confidence 34567899999999999999999999999999999997632211111 000 11
Q ss_pred CeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEe
Q 003217 313 DIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF 392 (838)
Q Consensus 313 ~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~ 392 (838)
.+..+-.-+++..+.-+.|..+.+|++.-+..+..-. -..+++.|-.. ++ .... +...-..++
T Consensus 58 ~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~S---i~~nslgFCrf---Sl--------~~~~---k~~eqll~y 120 (323)
T KOG0322|consen 58 FITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHS---IVVNSLGFCRF---SL--------VKKP---KNSEQLLEY 120 (323)
T ss_pred eeeceeecCCcchhhcCCCceEEEEEccCcceEEEee---eeccccccccc---ee--------ccCC---Ccchhheec
Confidence 1222223333333333446678899987766554321 11111111100 00 0000 000000011
Q ss_pred ecC----cceeeecCCcEEEEeccCccccCCCceEEEE--EcCCCc--EEEEECCCeEEEEcC-CCCee----------e
Q 003217 393 QRS----RNAIMGAADAVRRVAAKGGFGDDNRRTEALT--TSIDGM--IWTGGANGLLLQWDP-NGNRL----------Q 453 (838)
Q Consensus 393 ~~~----~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala--~S~dg~--l~Sgs~DgtIrlWD~-~g~~l----------~ 453 (838)
+.. .+..-+....-.++... .-......+.+.. +....+ ++.|-++|.|.+||+ ++..+ .
T Consensus 121 p~rgsde~h~~D~g~~tqv~i~dd-~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~ 199 (323)
T KOG0322|consen 121 PSRGSDETHKQDGGDTTQVQIADD-SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVES 199 (323)
T ss_pred CCcccchhhhhccCccceeEccCc-hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccccc
Confidence 000 00000000000111100 0001112222222 111122 567889999999999 56332 3
Q ss_pred EeecCCccEEEEEEcC--CEEEEEeeCCeEEEEeCC---Ccc-c-ccccccccCEEE--EEeCCCEEEEEcCCCCeeeee
Q 003217 454 DFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLE---GNL-L-GGWVAHSSPVIK--MAVGAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 454 tl~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~---g~~-i-~~l~gH~~~V~s--la~dg~~l~S~S~DgtIrlWd 524 (838)
....|..+|+++.++. .+=++|+.+-.+..|.++ |.+ + .....-+-.|.. |.+|++.++|+++|+.||++.
T Consensus 200 ~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVys 279 (323)
T KOG0322|consen 200 PNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYS 279 (323)
T ss_pred chhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEE
Confidence 3346899999997753 356678888889999875 332 2 222222334544 458999999999999999999
Q ss_pred cCCCCCCchhh
Q 003217 525 VTSPGPLDSIL 535 (838)
Q Consensus 525 l~s~~~~d~~~ 535 (838)
.++..|+.-+.
T Consensus 280 wrtl~pLAVLk 290 (323)
T KOG0322|consen 280 WRTLNPLAVLK 290 (323)
T ss_pred eccCCchhhhh
Confidence 98888876543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6e-08 Score=107.07 Aligned_cols=124 Identities=19% Similarity=0.281 Sum_probs=92.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-ccccccEEEEEEecCCC---EEEeeCCCcEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD---LWSGSEGGGIKI 266 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~---L~SgS~DgtIrv 266 (838)
++-|.||.|+.+|.+|+|||.|-.+.|||.-.- +.+..+ .||++.|.|+.|-|... ++||+.|..|||
T Consensus 50 ~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~--------KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 50 TGCVNCLEWNADGELLASGSDDTRLIVWDPFEY--------KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred cceecceeecCCCCEEeecCCcceEEeecchhc--------ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 889999999999999999999999999998753 444444 69999999999999643 689999999999
Q ss_pred EECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCC-CEEEEeC-CCcEEEEeccC
Q 003217 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDART 341 (838)
Q Consensus 267 Wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~V~s~s-~~tI~lWD~~t 341 (838)
+|+...+.. .....+ ......+..+...|+-++..+.+ ..+|+++ |++|+-+|++-
T Consensus 122 fdl~~~~~~----~~d~~~---------------~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 122 FDLDSSKEG----GMDHGM---------------EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred Eeccccccc----ccccCc---------------cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 999652110 000000 01111122346678888887776 6899988 78999999975
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-07 Score=110.65 Aligned_cols=148 Identities=22% Similarity=0.311 Sum_probs=108.2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceee
Q 003217 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKAL 276 (838)
Q Consensus 198 a~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~ 276 (838)
.++++-=++++|+.-+.|.+|+.... +....+.||.+.|.++.++.||+ ++|.|+|.++|+|++++.+..
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~d--------n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~- 210 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHED--------NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL- 210 (967)
T ss_pred eccCcEEEEEeccccccEEEEecccc--------CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc-
Confidence 34555568999999999999998743 11225789999999999999998 799999999999999663210
Q ss_pred ecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEE
Q 003217 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIEN 356 (838)
Q Consensus 277 ~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~ 356 (838)
.++.+++ +.++|
T Consensus 211 --------------------------------------~~~~fgH-----------saRvw------------------- 222 (967)
T KOG0974|consen 211 --------------------------------------GCTGFGH-----------SARVW------------------- 222 (967)
T ss_pred --------------------------------------Ccccccc-----------cceeE-------------------
Confidence 0111111 12233
Q ss_pred eeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEE
Q 003217 357 RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG 436 (838)
Q Consensus 357 ~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sg 436 (838)
.+.+.|. .++++
T Consensus 223 -------------------------------------------------------------------~~~~~~n-~i~t~ 234 (967)
T KOG0974|consen 223 -------------------------------------------------------------------ACCFLPN-RIITV 234 (967)
T ss_pred -------------------------------------------------------------------EEEeccc-eeEEe
Confidence 3334455 78889
Q ss_pred ECCCeEEEEcCCCCeeeEeecCCc-cEEEEEE-cCC-EEEEEeeCCeEEEEeCCCcc
Q 003217 437 GANGLLLQWDPNGNRLQDFQYLPF-AVQCLCT-FGS-QIWVGYMNGIVQVLDLEGNL 490 (838)
Q Consensus 437 s~DgtIrlWD~~g~~l~tl~~H~~-~V~sls~-dG~-~LasGs~DgtIrlWD~~g~~ 490 (838)
+.|-|.++|+.++..+.++.+|.. .|..++. .+. .+++++.|++|++||+.+..
T Consensus 235 gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 235 GEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred ccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 999999999888888888888875 5777755 343 77888899999999976543
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.9e-07 Score=110.01 Aligned_cols=160 Identities=17% Similarity=0.316 Sum_probs=105.1
Q ss_pred cCCEEEEecC-CCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEE
Q 003217 141 TEEQLWAGGE-NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCW 218 (838)
Q Consensus 141 ~~~~l~~g~d-~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~-dg~~LaSGs~DGtIrvW 218 (838)
-...|+++.| ..|||||...-.... .-|+. . ...|++|..+. .|.+|+.|-.||.||++
T Consensus 1176 ~~G~Ll~tGd~r~IRIWDa~~E~~~~---------------diP~~---s-~t~vTaLS~~~~~gn~i~AGfaDGsvRvy 1236 (1387)
T KOG1517|consen 1176 QSGHLLVTGDVRSIRIWDAHKEQVVA---------------DIPYG---S-STLVTALSADLVHGNIIAAGFADGSVRVY 1236 (1387)
T ss_pred hCCeEEecCCeeEEEEEecccceeEe---------------ecccC---C-CccceeecccccCCceEEEeecCCceEEe
Confidence 3556666554 599999996533211 12321 1 45677777664 46999999999999999
Q ss_pred ECCCCccCCCCCcceeEEecccccc--EEEEEEecCC--CEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeece
Q 003217 219 KMNARLLDSDDGFGEVLSWQAHRGP--VLSLCISSYG--DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSY 294 (838)
Q Consensus 219 d~~~g~~~~~~~~~~~~~l~gH~~~--V~slafs~dG--~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~ 294 (838)
|..... +-..+..++.|+.. |..+.+-+.| +|+|||.||.|++||+....+. ++
T Consensus 1237 D~R~a~-----~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e-~~---------------- 1294 (1387)
T KOG1517|consen 1237 DRRMAP-----PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE-TF---------------- 1294 (1387)
T ss_pred ecccCC-----ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc-cc----------------
Confidence 987642 11346678999877 9999998866 5999999999999999652110 00
Q ss_pred eecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEe
Q 003217 295 IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (838)
Q Consensus 295 ~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~ 349 (838)
.+...+... -+..+++........|++|+.+.|+||++. |+.+..+.
T Consensus 1295 ~~iv~~~~y-------Gs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~l~~~k 1341 (1387)
T KOG1517|consen 1295 LTIVAHWEY-------GSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQLNIIK 1341 (1387)
T ss_pred ceeeecccc-------CccceeeeeccCCCeeeecCcceEEEEecC-hhhhcccc
Confidence 000001000 113566777666778888888889999986 44444443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-06 Score=101.62 Aligned_cols=108 Identities=15% Similarity=0.181 Sum_probs=79.1
Q ss_pred CCCceEEEEEcCCCc-EEEEECCCeEEEEcCCC-----CeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCCc
Q 003217 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDPNG-----NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGN 489 (838)
Q Consensus 418 ~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g-----~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~ 489 (838)
|...+.+++++|.++ +++|..||.|.+|.--| .-.+.+.=|...|+++++ +|.+|+||+..|.+-+|.+++.
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 445577899999998 68888999999997633 223445558889999865 8999999999999999998732
Q ss_pred ccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeec
Q 003217 490 LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 490 ~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl 525 (838)
-.+-|.--.++|..+. +|+++.+..-.|+.|.+-..
T Consensus 284 ~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 284 KKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred CcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 2232333345677765 57776665566888877654
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-07 Score=95.76 Aligned_cols=114 Identities=16% Similarity=0.221 Sum_probs=78.0
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 003217 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNA 222 (838)
Q Consensus 144 ~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~ 222 (838)
.|.+.++..+|+|.+..-....+-.+ .++. -+.+-. ..|+++..+.. +-++|.+.|-|.|..+||+++
T Consensus 114 dlLATs~D~LRlWri~~ee~~~~~~~-~L~~---------~kns~~-~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~ 182 (364)
T KOG0290|consen 114 DLLATSSDFLRLWRIGDEESRVELQS-VLNN---------NKNSEF-CAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIET 182 (364)
T ss_pred chhhcccCeEEEEeccCcCCceehhh-hhcc---------Cccccc-CCcccccccccCCcceeEeecccCeEEEEEEee
Confidence 56677777899998853111100000 0000 000011 55777777754 458999999999999999998
Q ss_pred CccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCcc
Q 003217 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~ 273 (838)
+. ......+|.+|...|..|+|...|. ++|.+.||.||++|+...+
T Consensus 183 ~~-----~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le 230 (364)
T KOG0290|consen 183 GV-----SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE 230 (364)
T ss_pred cc-----ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence 62 1123556889999999999999775 6899999999999996543
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-06 Score=92.25 Aligned_cols=153 Identities=15% Similarity=0.206 Sum_probs=107.9
Q ss_pred EEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE-e-CCCc
Q 003217 137 TIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG-H-RDGR 214 (838)
Q Consensus 137 ~l~~~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG-s-~DGt 214 (838)
++.-..++|...=+..|.|||+.+...... + +.+.| + ...+.++.+++++-+||-- + .-|.
T Consensus 92 ~VrmNr~RLvV~Lee~IyIydI~~MklLhT-I----------~t~~~-----n-~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 92 AVRMNRKRLVVCLEESIYIYDIKDMKLLHT-I----------ETTPP-----N-PKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred EEEEccceEEEEEcccEEEEecccceeehh-h----------hccCC-----C-ccceEeeccCCCCceEEecCCCCCce
Confidence 444456678776566699999987654321 1 22212 1 3356777777666677653 3 3478
Q ss_pred EEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCc-EEEEECCCcceeeecCCCceeeeEEEEee
Q 003217 215 IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG-IKIWPWEAIEKALSLKPEERHTAALIVER 292 (838)
Q Consensus 215 IrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt-IrvWd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (838)
|.+||..+- +....+.+|+++|.+|+|+++|. |+|+|+-|| |||+.+.++++...+..+..
T Consensus 155 V~l~d~~nl--------~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------- 217 (391)
T KOG2110|consen 155 VVLFDTINL--------QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------- 217 (391)
T ss_pred EEEEEcccc--------eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---------
Confidence 999999874 66778899999999999999998 689998886 69999988777665543211
Q ss_pred ceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccC
Q 003217 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDART 341 (838)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~t 341 (838)
...+..+++++++..+.+.++ +||.++.+.+
T Consensus 218 ------------------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 218 ------------------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ------------------eeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 113667888888887776664 6898888764
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.8e-06 Score=95.31 Aligned_cols=73 Identities=15% Similarity=0.002 Sum_probs=55.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCc--
Q 003217 191 VSSVMCMVGDEASGVVWSGHR---DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGG-- 263 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~---DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~Dgt-- 263 (838)
..+|.+.+|+|||+.|+..+. +..|.+||+.++. ...+..+.+.+.+.+|+|||+ | ++.+.++.
T Consensus 201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~---------~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 271 (435)
T PRK05137 201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ---------RELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTD 271 (435)
T ss_pred CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc---------EEEeecCCCcccCcEECCCCCEEEEEEecCCCce
Confidence 568999999999999888774 3589999998862 334556677888999999997 5 47777776
Q ss_pred EEEEECCCc
Q 003217 264 IKIWPWEAI 272 (838)
Q Consensus 264 IrvWd~~~~ 272 (838)
|.+||++++
T Consensus 272 Iy~~d~~~~ 280 (435)
T PRK05137 272 IYTMDLRSG 280 (435)
T ss_pred EEEEECCCC
Confidence 555576553
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.3e-07 Score=100.50 Aligned_cols=93 Identities=13% Similarity=0.215 Sum_probs=73.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|...+|+|||++||+-|.||.+||+|..+. +....++.--+...||+|||||+ |++|++|-.|-||.+
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~--------eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ--------ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHH--------HHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 668889999999999999999999999999884 33334455568999999999999 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEe
Q 003217 270 EAIEKALSLKPEERHTAALIVE 291 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~ 291 (838)
....-.-..+.+..++..+..+
T Consensus 362 ~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 362 EERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred ccceEEEeccccccceeeEeec
Confidence 6543333335555566555544
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.4e-06 Score=93.36 Aligned_cols=97 Identities=12% Similarity=-0.013 Sum_probs=57.1
Q ss_pred EEEcCCCc-EEEEECC-CeEEEE--cCCCCeeeEeecCCccE--EEEEEcCCEEEEEeeC---CeEEEEeCCCccccccc
Q 003217 425 LTTSIDGM-IWTGGAN-GLLLQW--DPNGNRLQDFQYLPFAV--QCLCTFGSQIWVGYMN---GIVQVLDLEGNLLGGWV 495 (838)
Q Consensus 425 la~S~dg~-l~Sgs~D-gtIrlW--D~~g~~l~tl~~H~~~V--~sls~dG~~LasGs~D---gtIrlWD~~g~~i~~l~ 495 (838)
..++|||+ |+..+.+ +...+| |+++...+.+..+...+ .++++||++|+..+.+ ..|.+||+++.....+.
T Consensus 292 ~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt 371 (429)
T PRK03629 292 PTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT 371 (429)
T ss_pred eEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC
Confidence 45788887 6555543 444455 66543344444333333 3456799988876643 46889998743333333
Q ss_pred c-cccCEEEEEeCCCEEEEEcCCCCee
Q 003217 496 A-HSSPVIKMAVGAGYIFTLANHGGIR 521 (838)
Q Consensus 496 g-H~~~V~sla~dg~~l~S~S~DgtIr 521 (838)
. +...-.++++||++++.++.|+...
T Consensus 372 ~~~~~~~p~~SpDG~~i~~~s~~~~~~ 398 (429)
T PRK03629 372 DTFLDETPSIAPNGTMVIYSSSQGMGS 398 (429)
T ss_pred CCCCCCCceECCCCCEEEEEEcCCCce
Confidence 2 2122223558999999888887633
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.59 E-value=4e-05 Score=86.55 Aligned_cols=305 Identities=14% Similarity=0.155 Sum_probs=158.1
Q ss_pred EecCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003217 139 VCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMC 217 (838)
Q Consensus 139 ~~~~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrv 217 (838)
+..++.++.++ ++.|..+|..++..... .. +..... .+ .+. +++.++.++.||.+..
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~------------~~---~~~~~~-~~----p~v--~~~~v~v~~~~g~l~a 119 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWR------------VD---LDERLS-GG----VGA--DGGLVFVGTEKGEVIA 119 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeee------------ec---CCCCcc-cc----eEE--cCCEEEEEcCCCEEEE
Confidence 44577888754 67899999877654432 00 000011 11 222 4678889999999999
Q ss_pred EECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeec
Q 003217 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 297 (838)
+|.++| +.+....- .+.+.+.....++.++.++.|+.|..||.++++............. +
T Consensus 120 ld~~tG--------~~~W~~~~-~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~----------~ 180 (377)
T TIGR03300 120 LDAEDG--------KELWRAKL-SSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALT----------L 180 (377)
T ss_pred EECCCC--------cEeeeecc-CceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCcee----------e
Confidence 999887 33322211 1223222222345677788899999999988765544322110000 0
Q ss_pred ccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEE
Q 003217 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (838)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (838)
+ .....+.. ++ .+..+. ++.+..+|+++|+.+-........ .......... ..... +
T Consensus 181 ~-------------~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~-g~~~~~~~~~--~~~~p---~ 238 (377)
T TIGR03300 181 R-------------GSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPK-GRTELERLVD--VDGDP---V 238 (377)
T ss_pred c-------------CCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCC-CCCchhhhhc--cCCcc---E
Confidence 0 00000111 12 333333 467888898888865433211000 0000000000 00000 0
Q ss_pred EecCCCCcceeeeeEeecCcceeeecCC-cEEEEec-cCccc--cCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCe
Q 003217 377 VTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAA-KGGFG--DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNR 451 (838)
Q Consensus 377 ~s~~~~~~~~~s~~~~~~~~~~~~g~~~-~v~~v~~-~g~~~--~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~ 451 (838)
+. +..+++...+ .++.+.. .|... .........+. .+++++.++.||.|..+|. +|+.
T Consensus 239 ~~----------------~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 239 VD----------------GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAV-DDNRLYVTDADGVVVALDRRSGSE 301 (377)
T ss_pred EE----------------CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceE-eCCEEEEECCCCeEEEEECCCCcE
Confidence 00 0011111111 1222211 11100 00001111222 3567888889999999999 7876
Q ss_pred eeEeec-CCccEEEEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEE-EEeCCCEEEEEcCCCCeeee
Q 003217 452 LQDFQY-LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-MAVGAGYIFTLANHGGIRGW 523 (838)
Q Consensus 452 l~tl~~-H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s-la~dg~~l~S~S~DgtIrlW 523 (838)
+-.... ....+.+....|.+|++++.+|.|.++|.+ |+.+..+..|...+.+ ...-++.|+-++.||.|..+
T Consensus 302 ~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 302 LWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 644422 111222334468899999999999999986 8888888777655443 33444568889999988764
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-06 Score=93.35 Aligned_cols=124 Identities=15% Similarity=0.176 Sum_probs=85.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-ccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
++-|.++.|+.++++|+||+.|..+++|.++.-.. ...-+.+... ..|+..|.|++|....+ |+||..+++|.+-|
T Consensus 56 ~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~--~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 56 TGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV--RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred ccccceeeeccCCeEEeecCCcceeeeechHHHHh--hcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 88999999999999999999999999999875310 0011222221 23578999999988665 88999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCcc
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~ 343 (838)
+++.+...... +... .++|..+..++.+..+++.+ ++-|.+||.+..+
T Consensus 134 iEt~qsi~V~~-~~~~--------------------------~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 134 IETKQSIYVAN-ENNN--------------------------RGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred cccceeeeeec-ccCc--------------------------ccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 98754322211 1100 12444555555556666655 4678899987543
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-07 Score=102.92 Aligned_cols=100 Identities=20% Similarity=0.287 Sum_probs=57.9
Q ss_pred EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--
Q 003217 433 IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV-- 506 (838)
Q Consensus 433 l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~-- 506 (838)
|++++..|-++--|+ .|+.+..+..-.+.+..+.. -...|-.|...|+|.+|..+ ..++..+..|.++|.+|+.
T Consensus 224 L~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~ 303 (545)
T KOG1272|consen 224 LVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR 303 (545)
T ss_pred eeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC
Confidence 445555566666666 56655555544444444432 23455566666666666665 3456666666666666664
Q ss_pred CCCEEEEEcCCCCeeeeecCCCCCCc
Q 003217 507 GAGYIFTLANHGGIRGWNVTSPGPLD 532 (838)
Q Consensus 507 dg~~l~S~S~DgtIrlWdl~s~~~~d 532 (838)
+|.|++|.+.|..++|||++.+..++
T Consensus 304 ~G~YMaTtG~Dr~~kIWDlR~~~ql~ 329 (545)
T KOG1272|consen 304 GGRYMATTGLDRKVKIWDLRNFYQLH 329 (545)
T ss_pred CCcEEeecccccceeEeeeccccccc
Confidence 45666666666666666666544433
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-05 Score=85.75 Aligned_cols=89 Identities=11% Similarity=0.198 Sum_probs=72.8
Q ss_pred CCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCe-EEEEeCC-Ccccccccccc--cCEEEEEe--CCC
Q 003217 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGI-VQVLDLE-GNLLGGWVAHS--SPVIKMAV--GAG 509 (838)
Q Consensus 439 DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~Dgt-IrlWD~~-g~~i~~l~gH~--~~V~sla~--dg~ 509 (838)
.|.|.+||+ +-+.+.++..|.+.|.|+++ +|.+||++|..|| |||+.+. |+.+..|+--. ..|.+|++ |++
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~ 231 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ 231 (391)
T ss_pred CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC
Confidence 578999999 67888999999999999976 7999999998775 6899986 87776665332 34677875 778
Q ss_pred EEEEEcCCCCeeeeecCC
Q 003217 510 YIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 510 ~l~S~S~DgtIrlWdl~s 527 (838)
+|...|..+||.++.+..
T Consensus 232 ~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 232 FLAASSNTETVHIFKLEK 249 (391)
T ss_pred eEEEecCCCeEEEEEecc
Confidence 899999999999999753
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.56 E-value=9e-06 Score=85.38 Aligned_cols=238 Identities=10% Similarity=0.060 Sum_probs=158.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC-CEEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DLWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L~SgS~DgtIrvWd~ 269 (838)
..||+|.|+++|++.+|.+-....|.|+...+. ...+...+++-|...|+.|.++|.+ +|+||+.|....||..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~-----~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGA-----DLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCC-----CCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 459999999999999999999999999998774 3356788899999999999999988 5999999999999987
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l 348 (838)
..+. .+... ++.+| .+...+++--++.+.+++.++. ..|.||-.+
T Consensus 85 ~~~~---------~Wkpt------lvLlR-----------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E-------- 130 (361)
T KOG1523|consen 85 PSGG---------TWKPT------LVLLR-----------INRAATCVKWSPKENKFAVGSGARLISVCYYE-------- 130 (361)
T ss_pred CCCC---------eeccc------eeEEE-----------eccceeeEeecCcCceEEeccCccEEEEEEEe--------
Confidence 3211 11111 11111 1334566666777778777764 455555432
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
.... |+-+++-+ ......|.++.+.
T Consensus 131 -~ENd-----------------------WWVsKhik-------------------------------kPirStv~sldWh 155 (361)
T KOG1523|consen 131 -QEND-----------------------WWVSKHIK-------------------------------KPIRSTVTSLDWH 155 (361)
T ss_pred -cccc-----------------------eehhhhhC-------------------------------Cccccceeeeecc
Confidence 1111 11111100 0123456778888
Q ss_pred CCCc-EEEEECCCeEEEEcC--CC-----------------CeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeC
Q 003217 429 IDGM-IWTGGANGLLLQWDP--NG-----------------NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL 486 (838)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~--~g-----------------~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~ 486 (838)
|++. |+.||.|+.+|++.. ++ +.+.++....++|..+.+ +|.+|+=.+.|++|.+=|.
T Consensus 156 pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 156 PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 8877 678889999999863 21 223334345678888765 5999888889999999997
Q ss_pred CCc--ccccccccccCEEEEEe-CCCEEEEEcCCCCeee
Q 003217 487 EGN--LLGGWVAHSSPVIKMAV-GAGYIFTLANHGGIRG 522 (838)
Q Consensus 487 ~g~--~i~~l~gH~~~V~sla~-dg~~l~S~S~DgtIrl 522 (838)
.+. ...+...-.-+..++.+ ....++.++.|..=.+
T Consensus 236 ~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~l 274 (361)
T KOG1523|consen 236 AGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCGPVL 274 (361)
T ss_pred CCCchhccchhhccCCceeeEeecCCceeecCCCCCceE
Confidence 743 33333333356666654 5667777787754333
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-07 Score=104.73 Aligned_cols=87 Identities=23% Similarity=0.249 Sum_probs=76.3
Q ss_pred ceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC-Cccccccc
Q 003217 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (838)
Q Consensus 421 ~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (838)
.+...+||+||+ |++.|.||.+||+|. +.+++..++..-+..+|++ +||++|++|++|--|.||... ++.+..-.
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq 371 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ 371 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc
Confidence 566789999998 899999999999999 5566666766667788885 599999999999999999986 78899999
Q ss_pred ccccCEEEEEeC
Q 003217 496 AHSSPVIKMAVG 507 (838)
Q Consensus 496 gH~~~V~sla~d 507 (838)
||.++|..|++|
T Consensus 372 GHkSWVs~VaFD 383 (636)
T KOG2394|consen 372 GHKSWVSVVAFD 383 (636)
T ss_pred ccccceeeEeec
Confidence 999999999988
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-05 Score=91.25 Aligned_cols=196 Identities=13% Similarity=-0.001 Sum_probs=111.0
Q ss_pred cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee---CCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS---EGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS---~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
.|.+||.++. ....+..|...|.+.+|||||+ |+..+ .+..|.+||+.+++... +...
T Consensus 183 ~l~~~d~dg~---------~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~-------- 244 (435)
T PRK05137 183 RLAIMDQDGA---------NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNF-------- 244 (435)
T ss_pred EEEEECCCCC---------CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecC--------
Confidence 6778887663 3455667888999999999998 66544 34689999997654211 1100
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEE-EeC-C--CcEEEEeccCccEEEEEecCCceEEeeecccCcc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-F--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~-s~s-~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (838)
...+.....++++.+|+ +.+ + ..|.+||+.++++.+ +..+.
T Consensus 245 ---------------------~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~------------- 289 (435)
T PRK05137 245 ---------------------PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSP------------- 289 (435)
T ss_pred ---------------------CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCC-------------
Confidence 01112234455565543 332 2 247777887765422 21100
Q ss_pred cccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEEC-CC--e
Q 003217 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NG--L 441 (838)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~-Dg--t 441 (838)
.......++|||. |+..+. ++ .
T Consensus 290 ------------------------------------------------------~~~~~~~~spDG~~i~f~s~~~g~~~ 315 (435)
T PRK05137 290 ------------------------------------------------------AIDTSPSYSPDGSQIVFESDRSGSPQ 315 (435)
T ss_pred ------------------------------------------------------CccCceeEcCCCCEEEEEECCCCCCe
Confidence 0011245677776 555442 22 5
Q ss_pred EEEEcCCCCeeeEeecCCccEE--EEEEcCCEEEEEeeC---CeEEEEeCCCccccccc-ccccCEEEEEeCCCEEEEEc
Q 003217 442 LLQWDPNGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMN---GIVQVLDLEGNLLGGWV-AHSSPVIKMAVGAGYIFTLA 515 (838)
Q Consensus 442 IrlWD~~g~~l~tl~~H~~~V~--sls~dG~~LasGs~D---gtIrlWD~~g~~i~~l~-gH~~~V~sla~dg~~l~S~S 515 (838)
|.+||+++...+.+..+...+. .+++||++|+..+.+ ..|.+||+++...+.+. ++...-.+.++||+.|+-.+
T Consensus 316 Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 316 LYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred EEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEE
Confidence 8888886655555554444343 356799988876643 36888998754333332 22111123456888876544
Q ss_pred C
Q 003217 516 N 516 (838)
Q Consensus 516 ~ 516 (838)
.
T Consensus 396 ~ 396 (435)
T PRK05137 396 Q 396 (435)
T ss_pred c
Confidence 4
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.2e-06 Score=93.83 Aligned_cols=71 Identities=10% Similarity=0.004 Sum_probs=53.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EE-EeeCCCcEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~D---GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~DgtIr 265 (838)
..++.+.+|+|||+.|+..+.+ ..|.+||+.++. ...+....+.+.+.+|+|||+ |+ +.+.|+..+
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~---------~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 265 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR---------RRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQ 265 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC---------EEEeecCCCCccceEECCCCCEEEEEEccCCCce
Confidence 4578899999999999887754 359999998862 222333345567899999997 54 778899888
Q ss_pred EEECC
Q 003217 266 IWPWE 270 (838)
Q Consensus 266 vWd~~ 270 (838)
||.++
T Consensus 266 Iy~~d 270 (427)
T PRK02889 266 IYTVN 270 (427)
T ss_pred EEEEE
Confidence 88764
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.51 E-value=1e-05 Score=92.38 Aligned_cols=73 Identities=12% Similarity=0.009 Sum_probs=53.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCC--c
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDG---RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGG--G 263 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DG---tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~Dg--t 263 (838)
...+.+.+|+|||+.|+..+.++ .|.+||+.++. ...+..+.+.+.+++|+|||+ | ++.+.++ .
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~---------~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 259 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ---------REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPD 259 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC---------EEEeecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 44688899999999998877553 79999998862 233445666778899999997 5 4666555 4
Q ss_pred EEEEECCCc
Q 003217 264 IKIWPWEAI 272 (838)
Q Consensus 264 IrvWd~~~~ 272 (838)
|.+|++.++
T Consensus 260 i~~~d~~~~ 268 (417)
T TIGR02800 260 IYVMDLDGK 268 (417)
T ss_pred EEEEECCCC
Confidence 777887653
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.9e-06 Score=87.31 Aligned_cols=262 Identities=15% Similarity=0.206 Sum_probs=140.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccc------------ccEEEEEEecCCC---E
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR------------GPVLSLCISSYGD---L 255 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~------------~~V~slafs~dG~---L 255 (838)
..-+.|+.|+..|.+||||..+|.|.++.-+... ...+.-...+|.|. ..|+.+.+.+++. +
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~---~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLY---KGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeeccccc---ccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 3468899999999999999999999998755421 01112233456664 3588888888875 3
Q ss_pred EEeeCCCcEEEEECCCcceee---ecCCC--ceeeeEE----------EEeeceeecccceeccceeeeecCCeEEEEEc
Q 003217 256 WSGSEGGGIKIWPWEAIEKAL---SLKPE--ERHTAAL----------IVERSYIDLRSHLSVNGFSSILTSDIKNLLSD 320 (838)
Q Consensus 256 ~SgS~DgtIrvWd~~~~~~~~---~~~~~--~~~~~~~----------~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~ 320 (838)
+....|+|||+|.+....... .+..+ .....++ .++.+.....+++ ++-.+.++...
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNa--------HtyhiNSIS~N 173 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANA--------HTYHINSISVN 173 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccc--------ceeEeeeeeec
Confidence 456689999999985421111 00000 0000000 0011111111111 22345666777
Q ss_pred CCCCEEEEeCCCcEEEEeccC-ccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCccee
Q 003217 321 HSRAKVWSAGFLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAI 399 (838)
Q Consensus 321 ~~~~~V~s~s~~tI~lWD~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~ 399 (838)
++.....|+.|..|.||++.- .+.... +++-+..--..-+ .+++-.|.|..-+.+
T Consensus 174 sD~Et~lSADdLRINLWnlei~d~sFnI----------VDIKP~nmEeLte--------------VITsaEFhp~~cn~f 229 (433)
T KOG1354|consen 174 SDKETFLSADDLRINLWNLEIIDQSFNI----------VDIKPANMEELTE--------------VITSAEFHPHHCNVF 229 (433)
T ss_pred CccceEeeccceeeeeccccccCCceeE----------EEccccCHHHHHH--------------HHhhhccCHhHccEE
Confidence 778888888889999999852 222111 1221110000000 000001111111111
Q ss_pred e-ecCCcEEEEec----------cC------------ccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC--CCCeeeE
Q 003217 400 M-GAADAVRRVAA----------KG------------GFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP--NGNRLQD 454 (838)
Q Consensus 400 ~-g~~~~v~~v~~----------~g------------~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~--~g~~l~t 454 (838)
+ .+..|.+++-. .. -|.+-...|..+.|++.|+.+..-.=-+|++||+ +.+.+.+
T Consensus 230 ~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t 309 (433)
T KOG1354|consen 230 VYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVET 309 (433)
T ss_pred EEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceE
Confidence 1 01112122111 00 0122334677899999998544333368999999 4677888
Q ss_pred eecCCc------------cEEE---EEEc--CCEEEEEeeCCeEEEEeCC
Q 003217 455 FQYLPF------------AVQC---LCTF--GSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 455 l~~H~~------------~V~s---ls~d--G~~LasGs~DgtIrlWD~~ 487 (838)
++-|.. .|.. ++.. +.++.+|+.....+++++.
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence 876642 2221 2344 4599999999999999965
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.8e-05 Score=84.89 Aligned_cols=296 Identities=13% Similarity=0.071 Sum_probs=147.7
Q ss_pred EEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCcee
Q 003217 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (838)
Q Consensus 206 LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~ 284 (838)
+++-..+|.|.+.|.++. +.+..+..+.+.-..++|+|||+ ++.++.||.|.++|+.+.+..-++..
T Consensus 9 ~V~~~~~~~v~viD~~t~--------~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~---- 76 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATN--------KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV---- 76 (369)
T ss_dssp EEEEGGGTEEEEEETTT---------SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-----
T ss_pred EEEecCCCEEEEEECCCC--------eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec----
Confidence 345566899999999885 55666665444445678999998 77888999999999977542211110
Q ss_pred eeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeeccc
Q 003217 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSL 362 (838)
Q Consensus 285 ~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~ 362 (838)
......++.+++|..++.+. ..++.++|.+|.++++++...+... ..
T Consensus 77 --------------------------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~---~~-- 125 (369)
T PF02239_consen 77 --------------------------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV---DG-- 125 (369)
T ss_dssp --------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T---TT--
T ss_pred --------------------------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccc---cc--
Confidence 11245567778888888776 4789999999999988775322100 00
Q ss_pred Ccccccccceee-EEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccC------ccccCCCceEEEEEcCCCc-EE
Q 003217 363 LPDFAMEDEFKT-KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG------GFGDDNRRTEALTTSIDGM-IW 434 (838)
Q Consensus 363 ~~~~~~~~~~~~-~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g------~~~~~~~~v~ala~S~dg~-l~ 434 (838)
.+.|. .++....+..-. +...+ .+.+..+.... +............++|+++ ++
T Consensus 126 -------~~~Rv~aIv~s~~~~~fV--v~lkd---------~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 126 -------PESRVAAIVASPGRPEFV--VNLKD---------TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp -------S---EEEEEE-SSSSEEE--EEETT---------TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred -------cCCCceeEEecCCCCEEE--EEEcc---------CCeEEEEEeccccccceeeecccccccccccCcccceee
Confidence 00000 000000000000 00000 01111111000 0111122344578999987 43
Q ss_pred E-EECCCeEEEEcC-CCCeeeEee----cCCccEEEE-----------EEcCCEEEEEeeCCeEEEEeCC-Ccccccccc
Q 003217 435 T-GGANGLLLQWDP-NGNRLQDFQ----YLPFAVQCL-----------CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (838)
Q Consensus 435 S-gs~DgtIrlWD~-~g~~l~tl~----~H~~~V~sl-----------s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~g 496 (838)
. ...++.|-++|. +++.+..+. .|..++..+ .-.+....+.-....+.+||.. .+.++.+..
T Consensus 188 va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~ 267 (369)
T PF02239_consen 188 VAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT 267 (369)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-
T ss_pred ecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEEC
Confidence 3 445678999999 565554442 243333333 3233333222233355567765 677787777
Q ss_pred cccCEE-EEEeCCCEEEEE----cCCCCeeeeecCCCCCCchhhhh-hhhccccccccccceeeEEEEEEeCC
Q 003217 497 HSSPVI-KMAVGAGYIFTL----ANHGGIRGWNVTSPGPLDSILCK-ELAGKEFLYTRMENLKILAGTWNVGQ 563 (838)
Q Consensus 497 H~~~V~-sla~dg~~l~S~----S~DgtIrlWdl~s~~~~d~~~~~-~l~~r~~~y~~~~~~~i~~~twNv~~ 563 (838)
....+. ...+++.+++.. ...++|.++|.++......+... ...--..+|+..++ .+|+..|+.++
T Consensus 268 ~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~-~v~vS~~~~~~ 339 (369)
T PF02239_consen 268 QGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGK-EVWVSVWDGNG 339 (369)
T ss_dssp SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSS-EEEEEEE--TT
T ss_pred CCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCC-EEEEEEecCCC
Confidence 666633 223688888866 45689999998776433332210 00122456777776 48888888774
|
... |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-05 Score=85.34 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=86.7
Q ss_pred CcEEEEECCCeEEEEcC-CC-CeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC-Cccccc-ccccccCEEEE
Q 003217 431 GMIWTGGANGLLLQWDP-NG-NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGG-WVAHSSPVIKM 504 (838)
Q Consensus 431 g~l~Sgs~DgtIrlWD~-~g-~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~-l~gH~~~V~sl 504 (838)
.++++++.-+.||+||. .+ +.+..|..-.++|+++. ++|..|++|..-+.+..+|+. ++++.. +.|-++.|.+|
T Consensus 217 ~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsi 296 (412)
T KOG3881|consen 217 YKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSI 296 (412)
T ss_pred ceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceE
Confidence 45899999999999999 55 56777777778888875 578999999999999999998 566555 89999999999
Q ss_pred EeCCC--EEEEEcCCCCeeeeecCCCCCCch
Q 003217 505 AVGAG--YIFTLANHGGIRGWNVTSPGPLDS 533 (838)
Q Consensus 505 a~dg~--~l~S~S~DgtIrlWdl~s~~~~d~ 533 (838)
-.+++ +++|+|-|.-|||.|+.+..++..
T Consensus 297 h~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 297 HCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred EEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 87665 899999999999999988655554
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.7e-07 Score=98.70 Aligned_cols=223 Identities=14% Similarity=0.173 Sum_probs=146.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcc
Q 003217 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 194 V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~ 273 (838)
-+.+.++.+|+.|+.|+..|.+-..|..+. +....+. -...|..+.|-.+-+++....-+-+-|+|-...+
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~--------~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtE 202 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTK--------KLHFEIN-VMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTE 202 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccc--------eeeeeee-hhhhhhhhhhhcchHHHHhhhhceEEEecCCCcE
Confidence 456788889999999999999999999886 3332221 1568889999887776666677888899875432
Q ss_pred eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecCC
Q 003217 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDG 352 (838)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~ 352 (838)
.-++. -+ ..+..+-+-+---.+++++. +-++.-|+.+|+++..+....
T Consensus 203 -lHClk-------------------~~-----------~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~ 251 (545)
T KOG1272|consen 203 -LHCLK-------------------RH-----------IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA 251 (545)
T ss_pred -Eeehh-------------------hc-----------CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC
Confidence 11111 01 11222222233334444443 446777888888754332100
Q ss_pred ceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC-CC
Q 003217 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI-DG 431 (838)
Q Consensus 353 ~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~-dg 431 (838)
. .+..+...| +.
T Consensus 252 G-------------------------------------------------------------------~~~vm~qNP~Na 264 (545)
T KOG1272|consen 252 G-------------------------------------------------------------------RTDVMKQNPYNA 264 (545)
T ss_pred C-------------------------------------------------------------------ccchhhcCCccc
Confidence 0 000011111 22
Q ss_pred cEEEEECCCeEEEEcCC-CCeeeEeecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCCC-cccccccccccCEEEEEeC
Q 003217 432 MIWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEG-NLLGGWVAHSSPVIKMAVG 507 (838)
Q Consensus 432 ~l~Sgs~DgtIrlWD~~-g~~l~tl~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~g-~~i~~l~gH~~~V~sla~d 507 (838)
.+=.|..+|+|-+|..+ .+.+-.+..|.++|.+|+++ |.++++.+.|..|+|||+.. ..+.+... .-+...+++.
T Consensus 265 Vih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~S 343 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLS 343 (545)
T ss_pred eEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccc
Confidence 35578899999999994 67788888999999999884 88999999999999999974 33333322 2345566777
Q ss_pred CCEEEEEcCCCCeeeee
Q 003217 508 AGYIFTLANHGGIRGWN 524 (838)
Q Consensus 508 g~~l~S~S~DgtIrlWd 524 (838)
.+.++.+|.-..|.+|.
T Consensus 344 qkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 344 QKGLLALSYGDHVQIWK 360 (545)
T ss_pred cccceeeecCCeeeeeh
Confidence 77778788888899997
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.1e-06 Score=92.88 Aligned_cols=95 Identities=22% Similarity=0.309 Sum_probs=76.8
Q ss_pred CcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe
Q 003217 431 GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV 506 (838)
Q Consensus 431 g~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~ 506 (838)
+.|.|++.|+.+..|+. +++.+..+.+....+.++ ++||+.+++|+ +.|++||.+ .+.+..|+||.++|.++++
T Consensus 115 ~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 115 GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEE
Confidence 45889999999999999 678888888877777765 56888888864 789999998 6789999999999999874
Q ss_pred --C-----CCEEE-EEcCCCCeeeeecCC
Q 003217 507 --G-----AGYIF-TLANHGGIRGWNVTS 527 (838)
Q Consensus 507 --d-----g~~l~-S~S~DgtIrlWdl~s 527 (838)
+ |.+++ ++..+..|-+|-+..
T Consensus 193 ~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 193 TTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEeccccccceeeeccccccceeEEEEEc
Confidence 3 56666 556777888898654
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-05 Score=91.26 Aligned_cols=52 Identities=15% Similarity=-0.002 Sum_probs=38.7
Q ss_pred CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeC---CCcEEEEECCCcc
Q 003217 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE---GGGIKIWPWEAIE 273 (838)
Q Consensus 213 GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~---DgtIrvWd~~~~~ 273 (838)
..|.+||.++. ....+..|...|.+.+|+|||+ |+..+. +..|.+||+.+++
T Consensus 184 ~~l~i~D~~g~---------~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~ 239 (433)
T PRK04922 184 YALQVADSDGY---------NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ 239 (433)
T ss_pred EEEEEECCCCC---------CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC
Confidence 36889998763 3455667788999999999998 766553 3469999997654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.3e-05 Score=84.42 Aligned_cols=266 Identities=14% Similarity=0.077 Sum_probs=137.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCc
Q 003217 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (838)
Q Consensus 203 g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~ 282 (838)
++.|+.++.+|.+..+|..+| +.+-...-......+.+. .++.++.++.|+.+..+|.++++...+.....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG--------~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETG--------KRLWRVDLDERLSGGVGA-DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCC--------cEeeeecCCCCcccceEE-cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc
Confidence 578999999999999999887 343332222211122332 24568889999999999998776544332110
Q ss_pred eeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeeccc
Q 003217 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSL 362 (838)
Q Consensus 283 ~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~ 362 (838)
. +. +.. +. .++..++...++.+..||.++|+.+-.+........ ...
T Consensus 136 ~----------------------~~---~~p----~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~---~~~ 182 (377)
T TIGR03300 136 E----------------------VL---SPP----LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALT---LRG 182 (377)
T ss_pred e----------------------ee---cCC----EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCcee---ecC
Confidence 0 00 000 01 122233333457799999999998766543221100 000
Q ss_pred CcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc-Ccccc--CCCc---e-EEEEEcCCCcEEE
Q 003217 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-GGFGD--DNRR---T-EALTTSIDGMIWT 435 (838)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~-g~~~~--~~~~---v-~ala~S~dg~l~S 435 (838)
.....+.+. . ++...... . +. .....+|...+... +.... .... + .+..+ .++.++.
T Consensus 183 ~~sp~~~~~-~--v~~~~~~g-~---v~--------ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~ 246 (377)
T TIGR03300 183 SASPVIADG-G--VLVGFAGG-K---LV--------ALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYA 246 (377)
T ss_pred CCCCEEECC-E--EEEECCCC-E---EE--------EEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEE
Confidence 000000000 0 00000000 0 00 00011111111000 00000 0000 0 01111 2567888
Q ss_pred EECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-Ccccccccc-cccCEEEEEeCCCEEE
Q 003217 436 GGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA-HSSPVIKMAVGAGYIF 512 (838)
Q Consensus 436 gs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~g-H~~~V~sla~dg~~l~ 512 (838)
++.+|.+..||. +|+.+-.... ........++.+|++++.||.|..+|.. |+.+-.... ....+.+....+..++
T Consensus 247 ~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~ 324 (377)
T TIGR03300 247 VSYQGRVAALDLRSGRVLWKRDA--SSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLV 324 (377)
T ss_pred EEcCCEEEEEECCCCcEEEeecc--CCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEE
Confidence 888999999999 7876654432 1122345678899999999999999986 665432211 1112233334577899
Q ss_pred EEcCCCCeeeeecCCC
Q 003217 513 TLANHGGIRGWNVTSP 528 (838)
Q Consensus 513 S~S~DgtIrlWdl~s~ 528 (838)
.++.||.|.+||..+.
T Consensus 325 ~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 325 VGDFEGYLHWLSREDG 340 (377)
T ss_pred EEeCCCEEEEEECCCC
Confidence 9999999999986553
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.7e-06 Score=84.02 Aligned_cols=114 Identities=14% Similarity=0.204 Sum_probs=79.2
Q ss_pred CCCeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeC---CCcE
Q 003217 191 VSSVMCMVGDEASGVVWS--GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE---GGGI 264 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaS--Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~---DgtI 264 (838)
.++|.+++|+|+|+.++. |..+..|.+||+.. +.+.++. ...++.|.|||+|+ |+.|+. .|.|
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---------~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l 127 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---------KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDL 127 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---------cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEE
Confidence 457999999999988644 55788999999974 5566653 56788999999998 666654 3679
Q ss_pred EEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-------CCcEEEE
Q 003217 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-------FLSFALW 337 (838)
Q Consensus 265 rvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-------~~tI~lW 337 (838)
.+||+.+.+...... +..+..+..+++|..++++. +.+++||
T Consensus 128 ~~wd~~~~~~i~~~~-------------------------------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw 176 (194)
T PF08662_consen 128 EFWDVRKKKKISTFE-------------------------------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIW 176 (194)
T ss_pred EEEECCCCEEeeccc-------------------------------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEE
Confidence 999997543322111 12344556666676665543 4589999
Q ss_pred eccCccEEEE
Q 003217 338 DARTRELLKV 347 (838)
Q Consensus 338 D~~tg~~l~~ 347 (838)
+.. |+++..
T Consensus 177 ~~~-G~~l~~ 185 (194)
T PF08662_consen 177 SFQ-GRLLYK 185 (194)
T ss_pred Eec-CeEeEe
Confidence 984 655443
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.8e-07 Score=97.37 Aligned_cols=246 Identities=15% Similarity=0.141 Sum_probs=140.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (838)
+..|..++.-.+..-++|+|+|.|||+|.+.... +....-.+..+.++|+.+|.++.|-.+-+ ..+|-||.|.+||.=
T Consensus 735 ~~~iRai~AidNENSFiSASkDKTVKLWSik~Eg-D~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~ScD~giHlWDPF 812 (1034)
T KOG4190|consen 735 QEKIRAIAAIDNENSFISASKDKTVKLWSIKPEG-DEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASCDGGIHLWDPF 812 (1034)
T ss_pred HHHhHHHHhcccccceeeccCCceEEEEEecccc-CccccceeeeEhhhccCcccceeeeeccc-eeeeccCcceeeccc
Confidence 5567766654455678899999999999986531 11111235667899999999999988654 335569999999963
Q ss_pred CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEe
Q 003217 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (838)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~ 349 (838)
-+...-......+ ++. .+.++++-.-+..-.++.++ ..||++.|.+.++....+.
T Consensus 813 igr~Laq~~dapk----------------~~a--------~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k 868 (1034)
T KOG4190|consen 813 IGRLLAQMEDAPK----------------EGA--------GGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELK 868 (1034)
T ss_pred ccchhHhhhcCcc----------------cCC--------CceeEecccCcchheeeeccchhhheeeecccccceeeEE
Confidence 2211000000000 111 12345544322222222223 3689999998877644332
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~ 429 (838)
.-. .. ..+..+.++++.+
T Consensus 869 Vcn--------------------------a~------------------------------------~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 869 VCN--------------------------AP------------------------------------GPNALTRAIAVAD 886 (1034)
T ss_pred ecc--------------------------CC------------------------------------CCchheeEEEecc
Confidence 110 00 1112244566666
Q ss_pred CCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEE-EEcCCEEEEEeeCCeEEE-EeCC-CcccccccccccCEEEE
Q 003217 430 DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL-CTFGSQIWVGYMNGIVQV-LDLE-GNLLGGWVAHSSPVIKM 504 (838)
Q Consensus 430 dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sl-s~dG~~LasGs~DgtIrl-WD~~-g~~i~~l~gH~~~V~sl 504 (838)
.|. ++.|-.+|+|.+-|. +|+.+..+..-......+ ++..+.|+....|.++-+ |-.- |......+....+..=+
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl 966 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL 966 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh
Confidence 665 777778899999999 898887665433333344 345667777778888888 8743 44333333333222222
Q ss_pred EeCCCEEEEEcCCCCeeeee
Q 003217 505 AVGAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 505 a~dg~~l~S~S~DgtIrlWd 524 (838)
..-|-.++++-.-..++++-
T Consensus 967 qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 967 QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred hccCceeEEeccCcEEEEEe
Confidence 22233455555555555553
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.3e-05 Score=84.26 Aligned_cols=169 Identities=12% Similarity=0.113 Sum_probs=114.3
Q ss_pred cCCCCCccccCceeEEEEecCCEEEEecCCCEEEEeCC-CCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEc
Q 003217 122 KPHPLRETQIGCFLRTIVCTEEQLWAGGENGLRVWNLK-ELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGD 200 (838)
Q Consensus 122 ~~~~~~~~~~~~~~~~l~~~~~~l~~g~d~~vrvWd~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s 200 (838)
+..+.-|..-...++++....+++.+--++.|.||.+. +.....+ .|....| ..+.|+.=.
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~----------~et~~NP--------kGlC~~~~~ 145 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHV----------IETRSNP--------KGLCSLCPT 145 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheee----------eecccCC--------CceEeecCC
Confidence 33444444555667788888899999999999999985 3222211 0111111 123333322
Q ss_pred CCCCEEEE-EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCc-EEEEECCCcceeee
Q 003217 201 EASGVVWS-GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG-IKIWPWEAIEKALS 277 (838)
Q Consensus 201 ~dg~~LaS-Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt-IrvWd~~~~~~~~~ 277 (838)
.+..+||- |..-|.|++-|+.... ........+|...|.+|+++-+|. ++|+|.-|| |||||..++++...
T Consensus 146 ~~k~~LafPg~k~GqvQi~dL~~~~------~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 146 SNKSLLAFPGFKTGQVQIVDLASTK------PNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred CCceEEEcCCCccceEEEEEhhhcC------cCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 23334443 6677999999998741 012356789999999999999998 689998775 79999998877655
Q ss_pred cCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccC
Q 003217 278 LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDART 341 (838)
Q Consensus 278 ~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~t 341 (838)
+..+. ...++.+++++++...|+++++ +|+.++.++.
T Consensus 220 ~RRG~---------------------------d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 220 LRRGV---------------------------DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eecCC---------------------------chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 43221 1346889999999999999887 5888887754
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.7e-06 Score=85.93 Aligned_cols=103 Identities=16% Similarity=0.270 Sum_probs=77.8
Q ss_pred CceEEEEEcCCCc-E--EEEECCCeEEEEcCCCCeeeEeecCCccEEEE--EEcCCEEEEEee---CCeEEEEeCC-Ccc
Q 003217 420 RRTEALTTSIDGM-I--WTGGANGLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYM---NGIVQVLDLE-GNL 490 (838)
Q Consensus 420 ~~v~ala~S~dg~-l--~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~---DgtIrlWD~~-g~~ 490 (838)
..|.+++++|+|. + +.|..++.|.+||++++.+.++. ...++.+ +|+|++|+.|+. .|.|++||++ .+.
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~ 137 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK 137 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence 3588999999987 4 34556789999999988888774 4566666 568999999875 4679999997 456
Q ss_pred cccccccccCEEEEE--eCCCEEEEEcC------CCCeeeeecC
Q 003217 491 LGGWVAHSSPVIKMA--VGAGYIFTLAN------HGGIRGWNVT 526 (838)
Q Consensus 491 i~~l~gH~~~V~sla--~dg~~l~S~S~------DgtIrlWdl~ 526 (838)
+.... |. .+..++ +||+++++++. |+.++||++.
T Consensus 138 i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 138 ISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 66654 33 355665 58999998764 8999999974
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0001 Score=84.17 Aligned_cols=98 Identities=18% Similarity=0.141 Sum_probs=57.0
Q ss_pred EEcCCCc-EEEEEC-CC--eEEEEcCCCCeeeEeecCCccEE--EEEEcCCEEEEEeeCC---eEEEEeCCCcccccccc
Q 003217 426 TTSIDGM-IWTGGA-NG--LLLQWDPNGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNG---IVQVLDLEGNLLGGWVA 496 (838)
Q Consensus 426 a~S~dg~-l~Sgs~-Dg--tIrlWD~~g~~l~tl~~H~~~V~--sls~dG~~LasGs~Dg---tIrlWD~~g~~i~~l~g 496 (838)
.+++||+ |+..+. ++ .|.+||+.+...+.+..+...+. .++++|++|+.++.++ .|.+||+.+.....+..
T Consensus 284 ~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC
Confidence 3566665 544443 22 57778885444445554444444 3456899998888765 88899987543333332
Q ss_pred cccCE-EEEEeCCCEEEEEcCCCCeeee
Q 003217 497 HSSPV-IKMAVGAGYIFTLANHGGIRGW 523 (838)
Q Consensus 497 H~~~V-~sla~dg~~l~S~S~DgtIrlW 523 (838)
+.... .++++||+.++..+.++....+
T Consensus 364 ~~~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 364 TGLDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred CCCCCCceECCCCCEEEEEEeCCCcEEE
Confidence 21111 1345788888877766544433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=9.5e-05 Score=85.07 Aligned_cols=95 Identities=18% Similarity=0.112 Sum_probs=53.4
Q ss_pred EEEcCCCc-EEEEEC-CCeEEEEcC--CCCeeeEee--cCCccEEEEEEcCCEEEEEeeCC---eEEEEeCCCccccccc
Q 003217 425 LTTSIDGM-IWTGGA-NGLLLQWDP--NGNRLQDFQ--YLPFAVQCLCTFGSQIWVGYMNG---IVQVLDLEGNLLGGWV 495 (838)
Q Consensus 425 la~S~dg~-l~Sgs~-DgtIrlWD~--~g~~l~tl~--~H~~~V~sls~dG~~LasGs~Dg---tIrlWD~~g~~i~~l~ 495 (838)
..++|||+ |+..+. ++...+|.+ .+...+.+. ++...-.++++||++|+..+.++ .|.+||+.+.....+.
T Consensus 289 ~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 289 PFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred eEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 45788887 555543 455666654 343333332 22122235678999998776544 6999998743323333
Q ss_pred cc-ccCEEEEEeCCCEEEEEcCCCC
Q 003217 496 AH-SSPVIKMAVGAGYIFTLANHGG 519 (838)
Q Consensus 496 gH-~~~V~sla~dg~~l~S~S~Dgt 519 (838)
.+ ...-.+.++||+.|+.++.++.
T Consensus 369 ~~~~~~~p~~spdg~~l~~~~~~~g 393 (427)
T PRK02889 369 DTTRDESPSFAPNGRYILYATQQGG 393 (427)
T ss_pred CCCCccCceECCCCCEEEEEEecCC
Confidence 22 1212234568888887666554
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00039 Score=78.27 Aligned_cols=97 Identities=13% Similarity=0.173 Sum_probs=65.0
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK-GVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD 226 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~ 226 (838)
..++.|.|.|.++...... +. +...-..++++|||+++++.+.||.|.++|+.+.
T Consensus 13 ~~~~~v~viD~~t~~~~~~---------------------i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--- 68 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVAR---------------------IPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG--- 68 (369)
T ss_dssp GGGTEEEEEETTT-SEEEE---------------------EE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS---
T ss_pred cCCCEEEEEECCCCeEEEE---------------------EcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc---
Confidence 4578999999876543321 11 1122234778999999999999999999999997
Q ss_pred CCCCcceeEEeccccccEEEEEEecCCC-EE-EeeCCCcEEEEECCCcce
Q 003217 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGGIKIWPWEAIEK 274 (838)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~DgtIrvWd~~~~~~ 274 (838)
+.+.+.+.-. .-.++++|+||+ ++ +.-.++++.++|.++.+.
T Consensus 69 -----~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~ 112 (369)
T PF02239_consen 69 -----KVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP 112 (369)
T ss_dssp -----SEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--E
T ss_pred -----cEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccc
Confidence 5565655433 346899999999 44 566899999999987553
|
... |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.5e-05 Score=88.86 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=68.6
Q ss_pred EEEEECCCeEEE---EcCC--C----CeeeEeecCCccEEEEEE--cC-CEEEEEeeCCeEEEEeCC--Ccccccccccc
Q 003217 433 IWTGGANGLLLQ---WDPN--G----NRLQDFQYLPFAVQCLCT--FG-SQIWVGYMNGIVQVLDLE--GNLLGGWVAHS 498 (838)
Q Consensus 433 l~Sgs~DgtIrl---WD~~--g----~~l~tl~~H~~~V~sls~--dG-~~LasGs~DgtIrlWD~~--g~~i~~l~gH~ 498 (838)
++.|+.+|.|.- ++.+ . +.+..+..|.++|+++.. .+ +.+.+++ |-+|+||... ..++..+.-+.
T Consensus 363 FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~ 441 (555)
T KOG1587|consen 363 FIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSP 441 (555)
T ss_pred EEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhcc
Confidence 566666665543 2221 1 234466678999999964 34 4555555 9999999865 56788899999
Q ss_pred cCEEEEEeCC---CEEEEEcCCCCeeeeecCC
Q 003217 499 SPVIKMAVGA---GYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 499 ~~V~sla~dg---~~l~S~S~DgtIrlWdl~s 527 (838)
+.|+++++.+ ..++++..||.|-+||+..
T Consensus 442 ~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 442 DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred ceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 9999999854 4688999999999999753
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.2e-06 Score=63.11 Aligned_cols=37 Identities=32% Similarity=0.575 Sum_probs=34.2
Q ss_pred ceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
++..++++|+++|++|+|+|++. |+|||.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45778999999999999999987 78999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.3e-06 Score=94.21 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=51.5
Q ss_pred eEEEEEcCCC---CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEE
Q 003217 194 VMCMVGDEAS---GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (838)
Q Consensus 194 V~~la~s~dg---~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd 268 (838)
|-.+.+++.. ..+++-+...+| +|+++... + -....-+-||+.+|+.+-|.|... |+++|-|..+..||
T Consensus 70 vad~qws~h~a~~~wiVsts~qkai-iwnlA~ss----~-~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd 143 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAI-IWNLAKSS----S-NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWD 143 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhh-hhhhhcCC----c-cceEEEEecCccceeccccCCCCCcceeeccccccceeee
Confidence 4556666532 456666655555 89988642 1 122344679999999999998664 78999999999999
Q ss_pred CCC
Q 003217 269 WEA 271 (838)
Q Consensus 269 ~~~ 271 (838)
+.+
T Consensus 144 ~rS 146 (1081)
T KOG0309|consen 144 MRS 146 (1081)
T ss_pred ccC
Confidence 965
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.5e-05 Score=85.56 Aligned_cols=73 Identities=14% Similarity=-0.000 Sum_probs=48.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EE-EeeCCCc--
Q 003217 191 VSSVMCMVGDEASGVVWSGHRD-G--RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGG-- 263 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~D-G--tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~Dgt-- 263 (838)
..++.+..|+|||+.|+..+.+ + .|.+||+.++. .+.+..+.+ ...+.+|||||+ |+ +.+.++.
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~------~~~lt~~~g---~~~~~~wSPDG~~La~~~~~~g~~~ 287 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV------REKVTSFPG---INGAPRFSPDGKKLALVLSKDGQPE 287 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC------eEEecCCCC---CcCCeeECCCCCEEEEEEeCCCCeE
Confidence 4467889999999988776543 3 57788888762 011222333 345689999998 64 6677776
Q ss_pred EEEEECCCc
Q 003217 264 IKIWPWEAI 272 (838)
Q Consensus 264 IrvWd~~~~ 272 (838)
|.+||++++
T Consensus 288 Iy~~dl~tg 296 (448)
T PRK04792 288 IYVVDIATK 296 (448)
T ss_pred EEEEECCCC
Confidence 555676553
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00018 Score=82.75 Aligned_cols=73 Identities=12% Similarity=-0.007 Sum_probs=50.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EE-EeeCCC--c
Q 003217 191 VSSVMCMVGDEASGVVWSGHRD-G--RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGG--G 263 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~D-G--tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~Dg--t 263 (838)
..++.+..|+|||+.|+..+.+ + .|.+|++.++. ...+....+.+.+.+|+|||+ |+ +.+.++ .
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~---------~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR---------REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC---------EEEccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 4578899999999988776644 2 58889998862 222323334556789999997 54 666665 5
Q ss_pred EEEEECCCc
Q 003217 264 IKIWPWEAI 272 (838)
Q Consensus 264 IrvWd~~~~ 272 (838)
|.+||++++
T Consensus 269 Iy~~d~~~~ 277 (430)
T PRK00178 269 IYVMDLASR 277 (430)
T ss_pred EEEEECCCC
Confidence 777788664
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0001 Score=82.79 Aligned_cols=278 Identities=16% Similarity=0.163 Sum_probs=146.8
Q ss_pred cccccEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeecC--CCceeeeEEEEeec---------eeecccceeccc
Q 003217 239 AHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLK--PEERHTAALIVERS---------YIDLRSHLSVNG 305 (838)
Q Consensus 239 gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~~--~~~~~~~~~~~~~s---------~~~l~~~~~~~~ 305 (838)
+|...-+.|..||||+ |+||-.--.||++|+......+.-+ .+......++.+.+ .|.+.+.....-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 5777889999999998 5789888999999996532211111 11111122221111 122211100000
Q ss_pred eeeeecCCeEEEEEcCCCC-EEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCc
Q 003217 306 FSSILTSDIKNLLSDHSRA-KVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDK 384 (838)
Q Consensus 306 ~~~~~s~~v~~las~~~~~-~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~ 384 (838)
..-+|. ..+.++...-.. .+..|+...|.-.++..|.++.-|..+....+.+.+........ - +.
T Consensus 129 ~~RIP~-~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla---------~----Gt 194 (703)
T KOG2321|consen 129 RTRIPK-FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLA---------C----GT 194 (703)
T ss_pred eeecCc-CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEE---------e----cc
Confidence 001111 122233222222 33333445788889999999887765543333333322111000 0 00
Q ss_pred ceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCc--
Q 003217 385 AQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF-- 460 (838)
Q Consensus 385 ~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~-- 460 (838)
..+.+.||+.......+.-+....|.. .........|+++.|+.||. ++.|+.+|.|.++|+ ..+.+. ...|.+
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s-~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~ 272 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNS-HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYEL 272 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCC-CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-ecccCCcc
Confidence 111234443221112222111111110 11222334689999999997 899999999999999 444432 234444
Q ss_pred cEEEEEE---c-CCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecCCCCCCch
Q 003217 461 AVQCLCT---F-GSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGPLDS 533 (838)
Q Consensus 461 ~V~sls~---d-G~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s~~~~d~ 533 (838)
+|..+.+ + +..|+|. ....++|||-. |+.......- ..++.+. +++.++++|=.+.-+-.+-+..-+|.--
T Consensus 273 pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPr 350 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPR 350 (703)
T ss_pred ceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeEEccccCCCch
Confidence 6666654 2 3466664 56799999975 7766655432 3365554 5777888888887777776666555544
Q ss_pred h
Q 003217 534 I 534 (838)
Q Consensus 534 ~ 534 (838)
|
T Consensus 351 W 351 (703)
T KOG2321|consen 351 W 351 (703)
T ss_pred h
Confidence 4
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.4e-05 Score=84.02 Aligned_cols=104 Identities=16% Similarity=0.242 Sum_probs=78.2
Q ss_pred CCEEEE--ec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCc-EEE
Q 003217 142 EEQLWA--GG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGR-IMC 217 (838)
Q Consensus 142 ~~~l~~--g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGt-Irv 217 (838)
+..+.+ |. -|.|+|-|+..... .+|..-..| .+.|.|++.+.+|.+|||+|..|| ||+
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~-----------------~~p~~I~AH-~s~Iacv~Ln~~Gt~vATaStkGTLIRI 208 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKP-----------------NAPSIINAH-DSDIACVALNLQGTLVATASTKGTLIRI 208 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCc-----------------CCceEEEcc-cCceeEEEEcCCccEEEEeccCcEEEEE
Confidence 335555 32 36888888864321 123322344 889999999999999999999997 899
Q ss_pred EECCCCccCCCCCcceeEEec-c-ccccEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 218 WKMNARLLDSDDGFGEVLSWQ-A-HRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~~~~l~-g-H~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
||..+| ..+..++ | -...|.+|+|||++. |+.+|+-|||.|+.+..
T Consensus 209 Fdt~~g--------~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 209 FDTEDG--------TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEcCCC--------cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 999998 4566654 3 246799999999998 67888889999998854
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.9e-05 Score=97.99 Aligned_cols=89 Identities=19% Similarity=0.263 Sum_probs=70.9
Q ss_pred CCCeEEEEcC--CC--CeeeEeecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEeCCCE
Q 003217 438 ANGLLLQWDP--NG--NRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAGY 510 (838)
Q Consensus 438 ~DgtIrlWD~--~g--~~l~tl~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~~ 510 (838)
.++.+.+||. .+ .++. +.|.+.+++++.- -+.|.+|+.+|.|+|||+. .+++++|+. +. -..+
T Consensus 2313 d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------~~-~~~~ 2382 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------LD-TREY 2382 (2439)
T ss_pred CCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-------hh-hhhe
Confidence 4678999997 33 3455 7899999998654 5589999999999999998 577888876 12 3457
Q ss_pred EEEEcCCCCeeeeecCCCCCCchhhh
Q 003217 511 IFTLANHGGIRGWNVTSPGPLDSILC 536 (838)
Q Consensus 511 l~S~S~DgtIrlWdl~s~~~~d~~~~ 536 (838)
+++++..|.|+||++..+..+....-
T Consensus 2383 f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2383 FVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred eeccCcccceEEEEccccchhhcCch
Confidence 89999999999999988877766553
|
|
| >PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling [] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.3e-06 Score=87.69 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=39.0
Q ss_pred ccEEEEEEEecCCcCccCceeeceeecccC---cccCCCceeEEEEEEcCeEEEEEeccccCCcch
Q 003217 642 AGLLIAVWVRKNLKDYVGDVDVAAVPCGFG---RAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEA 704 (838)
Q Consensus 642 ~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~---~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~ 704 (838)
.+..++++.|.++...+..........+.. ....+++.+.+++. ++.|+++|+|+.+....
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~~ 135 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSNDE 135 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccchh
Confidence 467889999998764443333222222221 22356677777776 99999999999985443
|
Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X .... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1e-05 Score=87.42 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=64.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEE-eccccccEEEEEEecCCCEEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS-WQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~-l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (838)
-+-++.|+++||++.|.++.+|..||+=..... --+.+ +.||+.-|..|+.-++-.|+|||.|++||+||+
T Consensus 151 vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~--------f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 151 VSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT--------FVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhhheeeecCCCCEEEEecCCceEEEEecCcc--------cchhhhccccHhheeeeeeccCceeeecCCCCcEEEEec
Confidence 668999999999999999999999998765542 22333 369999999999998777999999999999999
Q ss_pred CCccee
Q 003217 270 EAIEKA 275 (838)
Q Consensus 270 ~~~~~~ 275 (838)
.++...
T Consensus 223 ~sgk~L 228 (390)
T KOG3914|consen 223 TSGKLL 228 (390)
T ss_pred ccCCcc
Confidence 886543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0018 Score=73.75 Aligned_cols=96 Identities=18% Similarity=0.199 Sum_probs=62.8
Q ss_pred CCCcEEEEECCCeEEEEcC-CCCeeeEeecCC-ccEEEEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEE-E
Q 003217 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLP-FAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-M 504 (838)
Q Consensus 429 ~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~-~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s-l 504 (838)
.+++++.++.+|.+...|. +|+.+=....-. ....+....+.+|+.++.||.|.+.|.+ |+.+....-+...+.+ .
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P 372 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEP 372 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCC
Confidence 3567888888999999999 676542221101 1122223457788999999999999986 7776555433333332 2
Q ss_pred EeCCCEEEEEcCCCCeeeee
Q 003217 505 AVGAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 505 a~dg~~l~S~S~DgtIrlWd 524 (838)
...++.|+-++.||.|..++
T Consensus 373 ~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 373 VVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred EEECCEEEEEeCCceEEEEe
Confidence 33455788889999887765
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00028 Score=74.48 Aligned_cols=99 Identities=12% Similarity=0.060 Sum_probs=69.0
Q ss_pred ceEEEEEcCCCcEEEEECC---CeEEEEcCCCCeeeEeecCCccEEEEEEcC--CEEEEEeeCCeEEEEeCCCccccccc
Q 003217 421 RTEALTTSIDGMIWTGGAN---GLLLQWDPNGNRLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLEGNLLGGWV 495 (838)
Q Consensus 421 ~v~ala~S~dg~l~Sgs~D---gtIrlWD~~g~~l~tl~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~g~~i~~l~ 495 (838)
.+.-++||+|.+.+..-.| +.+.+||+....+.+.--...+|..+..|. .+|+.+.....+.+|-+.|-......
T Consensus 320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP 399 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP 399 (447)
T ss_pred ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC
Confidence 3455899999985544444 479999996655555555677898887763 38888877778999999874332222
Q ss_pred ccccCEEEEEe--CCCEEEEEcCCCC
Q 003217 496 AHSSPVIKMAV--GAGYIFTLANHGG 519 (838)
Q Consensus 496 gH~~~V~sla~--dg~~l~S~S~Dgt 519 (838)
+..-.|.++.+ +|..++-.+.|.-
T Consensus 400 ~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 400 KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CCCceeeeEEecCCCcEEEEEcCCce
Confidence 33356777774 6788887887753
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.8e-06 Score=91.41 Aligned_cols=89 Identities=13% Similarity=0.270 Sum_probs=67.6
Q ss_pred EECCCeEEEEcC-CCCeeeEee-----cCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEE-
Q 003217 436 GGANGLLLQWDP-NGNRLQDFQ-----YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA- 505 (838)
Q Consensus 436 gs~DgtIrlWD~-~g~~l~tl~-----~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla- 505 (838)
++...|||++|. .++..-.++ +.+..+.++++ .|+.+++|-+.|+|-+.|.. |+.+.+|..-.-....++
T Consensus 847 csaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa 926 (1034)
T KOG4190|consen 847 CSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA 926 (1034)
T ss_pred ccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC
Confidence 456789999998 565544443 33445667754 68899999999999999986 888999987666666665
Q ss_pred eCCCEEEEEcCCCCeee-ee
Q 003217 506 VGAGYIFTLANHGGIRG-WN 524 (838)
Q Consensus 506 ~dg~~l~S~S~DgtIrl-Wd 524 (838)
+..+.+++...|.++-+ |.
T Consensus 927 psdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 927 PSDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred chhHHHHhhcccceeEeeeh
Confidence 56777888788888887 76
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0014 Score=83.31 Aligned_cols=258 Identities=12% Similarity=0.070 Sum_probs=137.2
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc--------------ccccEEEEEEecCCC-EE-E
Q 003217 195 MCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA--------------HRGPVLSLCISSYGD-LW-S 257 (838)
Q Consensus 195 ~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~g--------------H~~~V~slafs~dG~-L~-S 257 (838)
..+++|++ +.+.++-+..+.|++||..+. .+..+.+ +-..-..|++++++. |+ +
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~---------~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa 641 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN---------FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA 641 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC---------EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE
Confidence 45889875 557777778889999998763 2222211 112247899999876 65 4
Q ss_pred eeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEe--CCCcEE
Q 003217 258 GSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA--GFLSFA 335 (838)
Q Consensus 258 gS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~--s~~tI~ 335 (838)
-.....|+++|+.++.- .++....... .+..+ +....... -..-..+++++.+..++.+ +...|+
T Consensus 642 Dt~n~~Ir~id~~~~~V-~tlag~G~~g---------~~~~g-g~~~~~~~--ln~P~gVa~dp~~g~LyVad~~~~~I~ 708 (1057)
T PLN02919 642 DTENHALREIDFVNETV-RTLAGNGTKG---------SDYQG-GKKGTSQV--LNSPWDVCFEPVNEKVYIAMAGQHQIW 708 (1057)
T ss_pred eCCCceEEEEecCCCEE-EEEeccCccc---------CCCCC-ChhhhHhh--cCCCeEEEEecCCCeEEEEECCCCeEE
Confidence 44567899999865321 1110000000 00000 00000000 0112346666644554443 246799
Q ss_pred EEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCcc
Q 003217 336 LWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF 415 (838)
Q Consensus 336 lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~ 415 (838)
+||..++.. .++.+++... .. .+. .. .
T Consensus 709 v~d~~~g~v-~~~~G~G~~~-----~~---------------~g~----------------------~~----------~ 735 (1057)
T PLN02919 709 EYNISDGVT-RVFSGDGYER-----NL---------------NGS----------------------SG----------T 735 (1057)
T ss_pred EEECCCCeE-EEEecCCccc-----cC---------------CCC----------------------cc----------c
Confidence 999988765 3443322110 00 000 00 0
Q ss_pred ccCCCceEEEEEcCCCc-EE-EEECCCeEEEEcC-CCCeeeEeec--------------CC--------ccEEEE--EEc
Q 003217 416 GDDNRRTEALTTSIDGM-IW-TGGANGLLLQWDP-NGNRLQDFQY--------------LP--------FAVQCL--CTF 468 (838)
Q Consensus 416 ~~~~~~v~ala~S~dg~-l~-Sgs~DgtIrlWD~-~g~~l~tl~~--------------H~--------~~V~sl--s~d 468 (838)
.........++++++|. |+ +-+.++.|++||+ ++.. ..+.+ +. ..-..+ ..+
T Consensus 736 ~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d 814 (1057)
T PLN02919 736 STSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD 814 (1057)
T ss_pred cccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCC
Confidence 00011234578888875 64 4456789999998 4432 11110 00 011234 346
Q ss_pred CCEEEEEeeCCeEEEEeCCCcccccccc--------------cccCEEEEE--eCCCEEEEEcCCCCeeeeecCCC
Q 003217 469 GSQIWVGYMNGIVQVLDLEGNLLGGWVA--------------HSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 469 G~~LasGs~DgtIrlWD~~g~~i~~l~g--------------H~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
|...++-+.++.|++||.++..+.++.+ +-.....|+ .+|+.+++-+.+++||+||+.+.
T Consensus 815 G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 815 GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 7766666678999999987544333322 222345555 47888888889999999998653
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=5e-05 Score=83.70 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=49.5
Q ss_pred CcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc--CCEEEEEeeCCeEEEEeCC
Q 003217 431 GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 431 g~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~ 487 (838)
..++|||.-|.|-+|+- +++.|+-|.+...-|+||-+. -..||+.+.|.-||||-..
T Consensus 407 EyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 407 EYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred ceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence 35899999999999999 679999999877789999765 4689999999999999973
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00017 Score=81.52 Aligned_cols=120 Identities=12% Similarity=0.076 Sum_probs=87.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe--ccccccEEEEEEecCC-CEEEeeCCCcEEEEECCCcceeeecC
Q 003217 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYG-DLWSGSEGGGIKIWPWEAIEKALSLK 279 (838)
Q Consensus 203 g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG-~L~SgS~DgtIrvWd~~~~~~~~~~~ 279 (838)
--+|+-|...|.|-+++...| +....+ ..|.+.|+++..+.+- -|.|++.|+.+.+|+.....-.....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g--------~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~ 141 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGG--------EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK 141 (541)
T ss_pred ceEEEeecCCccEEEEEecCC--------eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec
Confidence 347899999999999999987 344444 4799999999877664 48999999999999985432111000
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeee
Q 003217 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVD 359 (838)
Q Consensus 280 ~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (838)
.....+..++.++++..+.+++ +.|++||+++++.+.+|.+|+..+..+.
T Consensus 142 -----------------------------~~~~~~~sl~is~D~~~l~~as-~~ik~~~~~~kevv~~ftgh~s~v~t~~ 191 (541)
T KOG4547|consen 142 -----------------------------EQKPLVSSLCISPDGKILLTAS-RQIKVLDIETKEVVITFTGHGSPVRTLS 191 (541)
T ss_pred -----------------------------cCCCccceEEEcCCCCEEEecc-ceEEEEEccCceEEEEecCCCcceEEEE
Confidence 0133455566666766666554 7899999999999999999987665444
Q ss_pred c
Q 003217 360 M 360 (838)
Q Consensus 360 ~ 360 (838)
+
T Consensus 192 f 192 (541)
T KOG4547|consen 192 F 192 (541)
T ss_pred E
Confidence 3
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00021 Score=76.43 Aligned_cols=113 Identities=18% Similarity=0.265 Sum_probs=77.2
Q ss_pred CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEC
Q 003217 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG-RIMCWKM 220 (838)
Q Consensus 142 ~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DG-tIrvWd~ 220 (838)
...|.++--++|-+|.....-..+.-++ +-+..+++. ++.. |..+|.+|++.+||..++++|.+. .|++||.
T Consensus 153 aselavgCr~gIciW~~s~tln~~r~~~-~~s~~~~qv----l~~p--gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdp 225 (445)
T KOG2139|consen 153 ASELAVGCRAGICIWSDSRTLNANRNIR-MMSTHHLQV----LQDP--GHNPVTSMQWNEDGTILVTASFGSSSIMIWDP 225 (445)
T ss_pred cceeeeeecceeEEEEcCcccccccccc-cccccchhh----eeCC--CCceeeEEEEcCCCCEEeecccCcceEEEEcC
Confidence 4467778888999998753221111000 001112222 2222 367999999999999999999765 7999999
Q ss_pred CCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
+++. ...+.++| -+.++-+.|||||. |+.++-|++.|||+.
T Consensus 226 dtg~-------~~pL~~~g-lgg~slLkwSPdgd~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 226 DTGQ-------KIPLIPKG-LGGFSLLKWSPDGDVLFAATCDAVFRLWQE 267 (445)
T ss_pred CCCC-------cccccccC-CCceeeEEEcCCCCEEEEecccceeeeehh
Confidence 9974 22222233 46788999999998 789999999999965
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0019 Score=72.90 Aligned_cols=106 Identities=20% Similarity=0.275 Sum_probs=85.1
Q ss_pred CCceEEEEEcCCCc---EEEEECCCeEEEEcCCCCeeeEeecCCccEEEE--EEcCCEEEEEee---CCeEEEEeCC-Cc
Q 003217 419 NRRTEALTTSIDGM---IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYM---NGIVQVLDLE-GN 489 (838)
Q Consensus 419 ~~~v~ala~S~dg~---l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~---DgtIrlWD~~-g~ 489 (838)
.+.|.++.++++|+ ++-|-+=-++.++|+.|+.+..|-. ++=+++ ++.|.+|+.++. -|.|.+||+. -+
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~e--gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPE--GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK 347 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCC--CCccceEECCCCCEEEEeecCCCCCceEEEeccchh
Confidence 46788999999996 4556677789999999999887753 333444 557998888775 5899999987 57
Q ss_pred ccccccccccCEEEEEeCCCEEEEEcC------CCCeeeeecC
Q 003217 490 LLGGWVAHSSPVIKMAVGAGYIFTLAN------HGGIRGWNVT 526 (838)
Q Consensus 490 ~i~~l~gH~~~V~sla~dg~~l~S~S~------DgtIrlWdl~ 526 (838)
++..+.+-...+..-.+||++++|+.+ |+++|||+..
T Consensus 348 ~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 348 LIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred hccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 899999888888777899999998775 7899999964
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00018 Score=80.05 Aligned_cols=126 Identities=12% Similarity=0.015 Sum_probs=91.3
Q ss_pred CcceeeecCCcEEEEec-cCc----cccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCC-CCeeeEeecCCccEEEEEE
Q 003217 395 SRNAIMGAADAVRRVAA-KGG----FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCT 467 (838)
Q Consensus 395 ~~~~~~g~~~~v~~v~~-~g~----~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~-g~~l~tl~~H~~~V~sls~ 467 (838)
+...++...||+..+|. .|. +......|.++++.|+.. ++-+-.+ .+.+=.+. ...+-..+.|.+-|.|+..
T Consensus 116 GtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~~IKpL~~n~k~i~WkAHDGiiL~~~W 194 (737)
T KOG1524|consen 116 GAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG-HISIKPLAANSKIIRWRAHDGLVLSLSW 194 (737)
T ss_pred CceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCC-eEEEeecccccceeEEeccCcEEEEeec
Confidence 34456667788888887 342 334556788999999876 5544433 35555552 3334457789999999976
Q ss_pred c--CCEEEEEeeCCeEEEEeCCCcccccccccccCEEEEEeCCCEEEEEcCCCCee
Q 003217 468 F--GSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIR 521 (838)
Q Consensus 468 d--G~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~dg~~l~S~S~DgtIr 521 (838)
+ ...|++|++|-..++||.-|+.+-+-..|.-+|++|++.+..++-.+.-+++|
T Consensus 195 ~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R 250 (737)
T KOG1524|consen 195 STQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTAR 250 (737)
T ss_pred CccccceeecCCceeEEeecccCcccccCChhccceeeeeeccccceeeeeeeeee
Confidence 4 67999999999999999999988888999999999998766555444455555
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0055 Score=77.97 Aligned_cols=271 Identities=13% Similarity=0.112 Sum_probs=137.1
Q ss_pred cCCEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe-CCCcEEE
Q 003217 141 TEEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH-RDGRIMC 217 (838)
Q Consensus 141 ~~~~l~~g--~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs-~DGtIrv 217 (838)
.++.+|++ ..+.|++||......... +-.+..|-.+ .++.. .. -+.-..|+++++++.|+.+. ..+.|++
T Consensus 578 ~~g~lyVaDs~n~rI~v~d~~G~~i~~i----g~~g~~G~~d-G~~~~-a~-f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 578 LNNRLFISDSNHNRIVVTDLDGNFIVQI----GSTGEEGLRD-GSFED-AT-FNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred CCCeEEEEECCCCeEEEEeCCCCEEEEE----ccCCCcCCCC-Cchhc-cc-cCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 35678874 467899999854321100 0000111000 01100 00 12346789999888666654 4568999
Q ss_pred EECCCCccCCCCCcceeEEecc--c---------------cccEEEEEEec-CCCE-EEeeCCCcEEEEECCCcceeeec
Q 003217 218 WKMNARLLDSDDGFGEVLSWQA--H---------------RGPVLSLCISS-YGDL-WSGSEGGGIKIWPWEAIEKALSL 278 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~~~~l~g--H---------------~~~V~slafs~-dG~L-~SgS~DgtIrvWd~~~~~~~~~~ 278 (838)
+|..++ .+.++.+ . -..-+.|+|+| +|.| ++.+.++.|++||..++... .+
T Consensus 651 id~~~~---------~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~ 720 (1057)
T PLN02919 651 IDFVNE---------TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VF 720 (1057)
T ss_pred EecCCC---------EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EE
Confidence 998774 2333211 0 01225799999 5665 57778899999998654211 11
Q ss_pred CCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEE
Q 003217 279 KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIEN 356 (838)
Q Consensus 279 ~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~ 356 (838)
...... . .. .+....... -.....++.++++..|+.+. .+.|++||+.++.......++...
T Consensus 721 ~G~G~~-~---------~~--~g~~~~~~~--~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~-- 784 (1057)
T PLN02919 721 SGDGYE-R---------NL--NGSSGTSTS--FAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF-- 784 (1057)
T ss_pred ecCCcc-c---------cC--CCCcccccc--ccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc--
Confidence 110000 0 00 000000000 01223466677777565544 368999999887642211111000
Q ss_pred eeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEE-E
Q 003217 357 RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIW-T 435 (838)
Q Consensus 357 ~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~-S 435 (838)
+. ... .| |..++... . ........++++++|.++ +
T Consensus 785 ----~~-~l~-----------------------~f---------G~~dG~g~---~----~~l~~P~Gvavd~dG~LYVA 820 (1057)
T PLN02919 785 ----SD-NLF-----------------------KF---------GDHDGVGS---E----VLLQHPLGVLCAKDGQIYVA 820 (1057)
T ss_pred ----Cc-ccc-----------------------cc---------cCCCCchh---h----hhccCCceeeEeCCCcEEEE
Confidence 00 000 00 00000000 0 001122367888999864 5
Q ss_pred EECCCeEEEEcCCCCeeeEeecCC--------------ccEEEEE--EcCCEEEEEeeCCeEEEEeCCC
Q 003217 436 GGANGLLLQWDPNGNRLQDFQYLP--------------FAVQCLC--TFGSQIWVGYMNGIVQVLDLEG 488 (838)
Q Consensus 436 gs~DgtIrlWD~~g~~l~tl~~H~--------------~~V~sls--~dG~~LasGs~DgtIrlWD~~g 488 (838)
-+.++.|++||.++..+.++.+.. .....|+ .+|+.+++-+.+++|++||+++
T Consensus 821 Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 821 DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 556889999999654444444321 1234444 4687666666799999999874
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0022 Score=73.82 Aligned_cols=51 Identities=16% Similarity=0.059 Sum_probs=35.1
Q ss_pred cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCC---CcEEEEECCCcc
Q 003217 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG---GGIKIWPWEAIE 273 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D---gtIrvWd~~~~~ 273 (838)
.|.++|.+++ ....+..|...+.+.+|||||+ |+..+.+ ..|.+|++.+++
T Consensus 180 ~l~~~d~~g~---------~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~ 234 (430)
T PRK00178 180 TLQRSDYDGA---------RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR 234 (430)
T ss_pred EEEEECCCCC---------CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC
Confidence 4667777664 2344556778899999999997 6544433 358888987653
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00012 Score=82.22 Aligned_cols=156 Identities=21% Similarity=0.245 Sum_probs=102.9
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003217 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNAR 223 (838)
Q Consensus 144 ~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g 223 (838)
.+.+|+...|+-.|++.+.... ||.. . .++++|+..++-.++|+.|+.||.|..||..+.
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~-----------------P~~~--~-~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLN-----------------PFET--D-SGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred EEEeecCcceEEEEcccccccc-----------------cccc--c-cccceeeeecCccceEEecccCceEEEecchhh
Confidence 4444666788888888765432 3422 2 568999999999999999999999999998764
Q ss_pred ccCCCCCcceeEEeccccc-----cEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeec
Q 003217 224 LLDSDDGFGEVLSWQAHRG-----PVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (838)
Q Consensus 224 ~~~~~~~~~~~~~l~gH~~-----~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 297 (838)
.. -..+....+...|.+ .|+++.|+.||- ++.|..+|.|-++|+.+.+..+.-
T Consensus 208 sr--v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k------------------- 266 (703)
T KOG2321|consen 208 SR--VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK------------------- 266 (703)
T ss_pred hh--heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-------------------
Confidence 20 000000111123433 499999999995 899999999999999775433211
Q ss_pred ccceeccceeeeecCCeEEEEEc--CCCCEEEEeCCCcEEEEeccCccEEEEEe
Q 003217 298 RSHLSVNGFSSILTSDIKNLLSD--HSRAKVWSAGFLSFALWDARTRELLKVFN 349 (838)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~--~~~~~V~s~s~~tI~lWD~~tg~~l~~l~ 349 (838)
.|+. .-+++.+... ..+.+|+|.....++|||-.+|+......
T Consensus 267 -dh~~--------e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 267 -DHGY--------ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE 311 (703)
T ss_pred -ccCC--------ccceeeecccccCCCceEEecchHHhhhcccccCCceeecc
Confidence 1110 1123333332 23567777776789999999998765544
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.002 Score=69.13 Aligned_cols=127 Identities=14% Similarity=0.156 Sum_probs=79.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc-ccccEEEEEEecCCC--EEEeeCCCcEEEEEC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA-HRGPVLSLCISSYGD--LWSGSEGGGIKIWPW 269 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~g-H~~~V~slafs~dG~--L~SgS~DgtIrvWd~ 269 (838)
-+.-+++.+---.++++..|-+||+++-... +...++. -+..|++|+|-|.+. |+.|.. +.|.+|..
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst---------~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~ 169 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSST---------CPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSD 169 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCC---------CCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEc
Confidence 3556777765556788999999999987652 2333433 256899999999874 777766 45999987
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC--CcEEEEeccCccEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELL 345 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~--~tI~lWD~~tg~~l 345 (838)
...... ....+.+.+. ....++.. .+..|.++.-..++..+.+++. ..|.|||..+|..+
T Consensus 170 s~tln~---~r~~~~~s~~----~~qvl~~p---------gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~ 231 (445)
T KOG2139|consen 170 SRTLNA---NRNIRMMSTH----HLQVLQDP---------GHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI 231 (445)
T ss_pred Cccccc---cccccccccc----chhheeCC---------CCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc
Confidence 542111 0000000000 00001111 1345788888888888888874 57999999998763
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00061 Score=72.53 Aligned_cols=226 Identities=17% Similarity=0.217 Sum_probs=134.0
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecC--CCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003217 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG--VSSVMCMVGDEASGVVWSGHRDGRIMCW 218 (838)
Q Consensus 142 ~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g--~~~V~~la~s~dg~~LaSGs~DGtIrvW 218 (838)
...+|. +.|.++|||--.+.- +.+ .++.+ ..++.++.+.++.+.|+.|-..|++--+
T Consensus 36 e~gv~~~s~drtvrv~lkrds~----------------q~w----psI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 36 EEGVISVSEDRTVRVWLKRDSG----------------QYW----PSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred CCCeEEccccceeeeEEecccc----------------ccC----chhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 445665 778899999542211 111 11222 6689999999999999999999999888
Q ss_pred ECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeec
Q 003217 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (838)
Q Consensus 219 d~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 297 (838)
.+.... +.....+.+..|...|..+.|+..-+ ++|.+.|+.+ .|-.....+.+
T Consensus 96 s~sedf----nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e~~~~l--------------------- 149 (404)
T KOG1409|consen 96 ALSEDF----NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTESGNRL--------------------- 149 (404)
T ss_pred Ehhhhh----hhcchhhhhhhhhcceeeEEecCCceeEEEeccccce-EEEeeccCCcc---------------------
Confidence 776531 11123455789999999999998766 6789888765 34321100000
Q ss_pred ccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEE
Q 003217 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIV 377 (838)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 377 (838)
++ ++....... .-.|+. ..|-++-
T Consensus 150 ------g~----------Y~~~~~~t~----------~~~d~~-----~~fvGd~------------------------- 173 (404)
T KOG1409|consen 150 ------GG----------YNFETPASA----------LQFDAL-----YAFVGDH------------------------- 173 (404)
T ss_pred ------cc----------eEeeccCCC----------CceeeE-----EEEeccc-------------------------
Confidence 00 000000000 000100 0000000
Q ss_pred ecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCCC--CeeeE
Q 003217 378 TSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNG--NRLQD 454 (838)
Q Consensus 378 s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g--~~l~t 454 (838)
...+....+.+.....+. ++.+|...+.++.+.+... |.||..|..|.+||+-| .....
T Consensus 174 -----~gqvt~lr~~~~~~~~i~-------------~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e 235 (404)
T KOG1409|consen 174 -----SGQITMLKLEQNGCQLIT-------------TFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE 235 (404)
T ss_pred -----ccceEEEEEeecCCceEE-------------EEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee
Confidence 000000111111100000 1445667777888777544 78999999999999954 34566
Q ss_pred eecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 455 FQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 455 l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
+.+|.+.|..++. .-+++.|++.||.|.+||.+
T Consensus 236 l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 236 LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred eccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 7799999998854 45799999999999999975
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.013 Score=65.17 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=48.6
Q ss_pred EEEcCCCc-EEEEE----------CCCeEEEEcC-CCCeeeEeecCCccEEEE--EEcCC-EEEEEe-eCCeEEEEeCC-
Q 003217 425 LTTSIDGM-IWTGG----------ANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGS-QIWVGY-MNGIVQVLDLE- 487 (838)
Q Consensus 425 la~S~dg~-l~Sgs----------~DgtIrlWD~-~g~~l~tl~~H~~~V~sl--s~dG~-~LasGs-~DgtIrlWD~~- 487 (838)
+++++|+. ++... ..+.|.++|. +++.+..+.. ...+..| ++||+ +|++.. .++.|.+.|+.
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 77887765 55522 1247999999 7888887764 2345554 56899 888777 58899999987
Q ss_pred Ccccccc
Q 003217 488 GNLLGGW 494 (838)
Q Consensus 488 g~~i~~l 494 (838)
++.+++.
T Consensus 332 ~k~i~~i 338 (352)
T TIGR02658 332 GKELSSV 338 (352)
T ss_pred CeEEeee
Confidence 6666655
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00074 Score=71.37 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=83.1
Q ss_pred CCCceEEEEEcCCCc-EEEEECCCeEEEEcCCCC-----eeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeC---
Q 003217 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGN-----RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL--- 486 (838)
Q Consensus 418 ~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g~-----~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~--- 486 (838)
+++...+|.++|.+. +++||.-..|-+|-.+++ .-++-+.+.+.|+++.. .+-.|++|+.|+..||+..
T Consensus 99 iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK 178 (361)
T KOG1523|consen 99 INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIK 178 (361)
T ss_pred eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeee
Confidence 344556777888776 899999999999987543 11223456778999976 4558999999999999861
Q ss_pred --C--------------CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCC
Q 003217 487 --E--------------GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 487 --~--------------g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~ 529 (838)
+ |+++..+....++|..+.+ +|..|+..++|.+|.+=|...|.
T Consensus 179 ~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 179 GVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 1 2345666666788999875 58999999999999988766554
|
|
| >PRK11756 exonuclease III; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.1e-05 Score=81.01 Aligned_cols=127 Identities=15% Similarity=0.201 Sum_probs=68.6
Q ss_pred EEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCCCCCEE
Q 003217 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFE 634 (838)
Q Consensus 555 ~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~y~ 634 (838)
-+.|||+++.+.....+.+||.. .+|||+ +|||+......+ . .+.+ +.+ +..|.
T Consensus 2 ri~T~Nv~g~~~~~~~i~~~i~~--~~pDIi--~LQE~~~~~~~~-----------------~--~~~~-~~~--gy~~~ 55 (268)
T PRK11756 2 KFVSFNINGLRARPHQLEAIIEK--HQPDVI--GLQETKVHDEMF-----------------P--LEEV-EAL--GYHVF 55 (268)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHh--cCCCEE--EEEecccccccC-----------------C--HHHH-Hhc--CCEEE
Confidence 47799999765545667888885 456765 599985321100 0 0111 112 22222
Q ss_pred EEeeeecccEEEEEEEecCCcCccCceeeceeecccCc--ccCCCceeEEEEEEcCeEEEEEeccccCCc-----chHHH
Q 003217 635 RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGR--AIGNKGAVGLRVRVYDRIMCFVNCHFAAHL-----EAVNR 707 (838)
Q Consensus 635 ~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~--~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~-----~~~~~ 707 (838)
.-+...-.| .+++.|..+. .+. .++.+ .....+.+.+++...+..+.|+|+|++.+. .+.+.
T Consensus 56 ~~~~~~~~G--vailSr~p~~----~~~-----~~~~~~~~~~~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~ 124 (268)
T PRK11756 56 YHGQKGHYG--VALLSKQTPI----AVR-----KGFPTDDEEAQRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPA 124 (268)
T ss_pred EeCCCCCCE--EEEEECCChH----HeE-----ECCCCccccccCCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHH
Confidence 112222234 5567887653 221 12211 112457888888876556999999997653 23334
Q ss_pred HHHHHHHHHHh
Q 003217 708 RNADFDHVYRT 718 (838)
Q Consensus 708 Rn~d~~~I~~~ 718 (838)
|.+.++.+...
T Consensus 125 r~~~~~~l~~~ 135 (268)
T PRK11756 125 KRQFYQDLQNY 135 (268)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00048 Score=74.47 Aligned_cols=178 Identities=16% Similarity=0.175 Sum_probs=118.7
Q ss_pred CCCCCccccCceeEEEEecCC--EEEE--ecC--CCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEE
Q 003217 123 PHPLRETQIGCFLRTIVCTEE--QLWA--GGE--NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMC 196 (838)
Q Consensus 123 ~~~~~~~~~~~~~~~l~~~~~--~l~~--g~d--~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~ 196 (838)
..||.+-+.|.-+..+-.+.. .+.+ |-+ +.+++||+++...... +..--.+..-++- .-+++.
T Consensus 139 ss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~-------aKNvpnD~L~LrV----PvW~td 207 (412)
T KOG3881|consen 139 SSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWS-------AKNVPNDRLGLRV----PVWITD 207 (412)
T ss_pred cccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeee-------ccCCCCcccccee----eeeecc
Confidence 356666666666666654432 5555 446 7899999976543321 0000011111111 235667
Q ss_pred EEEcCC--CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcc
Q 003217 197 MVGDEA--SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 197 la~s~d--g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~ 273 (838)
+.|-+. ...+|+++.=+.+|+||...+- ++..++.--..+|+++...|.|+ +++|-.-+.+..+|+.++.
T Consensus 208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-------RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITRYHQVRLYDTRHQR-------RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred ceecCCCCCceEEEEecceeEEEecCcccC-------cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCce
Confidence 888776 7899999999999999998762 45555555578999999999998 6899999999999986643
Q ss_pred eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEE
Q 003217 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
...+. +++. ++.++.+...+....+++++ |.-+||+|+.|.+++.
T Consensus 281 l~g~~------------------~kg~----------tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 281 LLGCG------------------LKGI----------TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred eeccc------------------cCCc----------cCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence 21110 0011 44567777777777888888 7899999999977654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.015 Score=64.66 Aligned_cols=261 Identities=11% Similarity=0.070 Sum_probs=134.1
Q ss_pred CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EE-Eee---------CCCcEEEEECCCcceeeecCCC
Q 003217 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGS---------EGGGIKIWPWEAIEKALSLKPE 281 (838)
Q Consensus 213 GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS---------~DgtIrvWd~~~~~~~~~~~~~ 281 (838)
++|-+.|.++. +.+.++..=..+-. + +||||+ |+ +.+ .+..|.+||+.+.+..-.+...
T Consensus 27 ~~v~ViD~~~~--------~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p 96 (352)
T TIGR02658 27 TQVYTIDGEAG--------RVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP 96 (352)
T ss_pred ceEEEEECCCC--------EEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC
Confidence 88999999886 44444432222222 4 999998 54 555 6899999999886543322211
Q ss_pred ce-eeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC---CCcEEEEeccCccEEEEEecCCceEEe
Q 003217 282 ER-HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDARTRELLKVFNIDGQIENR 357 (838)
Q Consensus 282 ~~-~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s---~~tI~lWD~~tg~~l~~l~~~~~~~~~ 357 (838)
+. .... -.....++.++++..++... +..+.+.|+.+++++......+...
T Consensus 97 ~~p~~~~-----------------------~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-- 151 (352)
T TIGR02658 97 EGPRFLV-----------------------GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-- 151 (352)
T ss_pred CCchhhc-----------------------cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE--
Confidence 11 0000 01122455677777777655 4689999999999988765422110
Q ss_pred eecccCcccccccceeeEEEecCCCCcceeeeeEeecCccee-eecCCcEEEEeccCccccCCCce-EEEEEcC-CCc-E
Q 003217 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAI-MGAADAVRRVAAKGGFGDDNRRT-EALTTSI-DGM-I 433 (838)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~-~g~~~~v~~v~~~g~~~~~~~~v-~ala~S~-dg~-l 433 (838)
+-.+....+.+ ...++.... .-..+|-........|..+...+ ..-.+++ ||+ +
T Consensus 152 vy~t~e~~~~~----------------------~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 152 IFPTANDTFFM----------------------HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EEEecCCccEE----------------------EeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 00010000000 000000000 00000000000000000000000 0002234 676 4
Q ss_pred EEEECCCeEEEEcCCC------CeeeEeec-------CCcc--EEEEEEcCCEEEEEee----------CCeEEEEeCC-
Q 003217 434 WTGGANGLLLQWDPNG------NRLQDFQY-------LPFA--VQCLCTFGSQIWVGYM----------NGIVQVLDLE- 487 (838)
Q Consensus 434 ~Sgs~DgtIrlWD~~g------~~l~tl~~-------H~~~--V~sls~dG~~LasGs~----------DgtIrlWD~~- 487 (838)
|.... |+|.+-|+.+ +.+..+.. .... ..++.++|+++++... .+.|.++|++
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 55554 9999999633 22222221 1112 2345568898888531 2579999987
Q ss_pred Cccccccc-ccccCEEEEE--eCCC-EEEEEc-CCCCeeeeecCCCCCCch
Q 003217 488 GNLLGGWV-AHSSPVIKMA--VGAG-YIFTLA-NHGGIRGWNVTSPGPLDS 533 (838)
Q Consensus 488 g~~i~~l~-gH~~~V~sla--~dg~-~l~S~S-~DgtIrlWdl~s~~~~d~ 533 (838)
++.+..+. |+ .++.|+ +|++ .++... .++.|.+.|+.+...+..
T Consensus 289 ~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 289 GKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred CeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 56665543 54 566665 6888 777555 688899999877655443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00034 Score=73.34 Aligned_cols=77 Identities=13% Similarity=0.213 Sum_probs=54.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccc------------ccEEEEEEecCC-C--E
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR------------GPVLSLCISSYG-D--L 255 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~------------~~V~slafs~dG-~--L 255 (838)
..-|++|.|+..|.+|++|.+.|.|.++.-+... ....+-...||+|. ..|..|.+-.++ + +
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~---~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSY---GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeeccccc---ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 4468999999999999999999999999765431 01111123467775 347777666554 3 4
Q ss_pred EEeeCCCcEEEEECC
Q 003217 256 WSGSEGGGIKIWPWE 270 (838)
Q Consensus 256 ~SgS~DgtIrvWd~~ 270 (838)
+-...|+|||+|.+-
T Consensus 103 LlstNdktiKlWKiy 117 (460)
T COG5170 103 LLSTNDKTIKLWKIY 117 (460)
T ss_pred EEecCCceeeeeeee
Confidence 555689999999974
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0033 Score=72.83 Aligned_cols=51 Identities=18% Similarity=0.038 Sum_probs=33.4
Q ss_pred cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee-CCC--cEEEEECCCcc
Q 003217 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGG--GIKIWPWEAIE 273 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~Dg--tIrvWd~~~~~ 273 (838)
.+.++|.++. ....+..+...+.+..|||||+ |+..+ .++ .|.+||+.+++
T Consensus 199 ~l~i~d~dG~---------~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~ 253 (448)
T PRK04792 199 QLMIADYDGY---------NEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV 253 (448)
T ss_pred EEEEEeCCCC---------CceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC
Confidence 5566677664 2334455677899999999998 65433 343 47777876643
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.9e-05 Score=56.38 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=26.4
Q ss_pred CCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEe
Q 003217 449 GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 449 g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (838)
|++++++.+|.+.|+++++ ++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3567777777777777754 466777777777777776
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00059 Score=72.67 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=67.6
Q ss_pred CCeeeEeecCCccEEEEEEcC--CEEEEEeeCCeEEEEeCCCc--ccccccccccCEEEEE--eCCCEEEEEcCCCCeee
Q 003217 449 GNRLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLEGN--LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRG 522 (838)
Q Consensus 449 g~~l~tl~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~g~--~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrl 522 (838)
-..+.++.+|.+.|.+++.|+ ..|.+|+.|..|-+||+-|+ ....+.+|.+.|..+. ..-+.++|++.||.|-+
T Consensus 187 ~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 187 CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV 266 (404)
T ss_pred CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence 367888999999999999875 48999999999999998754 4678899999999886 45678999999999999
Q ss_pred eecC
Q 003217 523 WNVT 526 (838)
Q Consensus 523 Wdl~ 526 (838)
|+..
T Consensus 267 w~mn 270 (404)
T KOG1409|consen 267 WNMN 270 (404)
T ss_pred Eecc
Confidence 9964
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0083 Score=62.58 Aligned_cols=96 Identities=21% Similarity=0.389 Sum_probs=63.8
Q ss_pred CCcEEEEECCCeEEEEcC-CCCeeeEeecCCcc----E-------EEEEEcCCEEEEEeeCCe-EEEEeCC-Cccccccc
Q 003217 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFA----V-------QCLCTFGSQIWVGYMNGI-VQVLDLE-GNLLGGWV 495 (838)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~----V-------~sls~dG~~LasGs~Dgt-IrlWD~~-g~~i~~l~ 495 (838)
++.++.+..++.|..+|+ +|+.+-.+..+... + ..+...+..++.++.++. +.+ |++ |+.+ |.
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~--w~ 198 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKL--WS 198 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEE--EE
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEE--EE
Confidence 445777777888999998 78877666553322 1 122334448888887874 666 987 5533 33
Q ss_pred ccccCEEE-EEeCCCEEEEEcCCCCeeeeecCCC
Q 003217 496 AHSSPVIK-MAVGAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 496 gH~~~V~s-la~dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
.....+.. ...++..++.++.|+.|..||+.+.
T Consensus 199 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 199 KPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp ECSS-ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred ecCCCccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 33334555 5678888888889999999998775
|
... |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0002 Score=74.70 Aligned_cols=106 Identities=18% Similarity=0.208 Sum_probs=79.7
Q ss_pred EEEcCCCc-EEEEECCCeEEEEcC-CC--CeeeEeecCCccEEEEEEc---CCEEEEEeeCCeEEEEeCC--Ccc-cccc
Q 003217 425 LTTSIDGM-IWTGGANGLLLQWDP-NG--NRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE--GNL-LGGW 494 (838)
Q Consensus 425 la~S~dg~-l~Sgs~DgtIrlWD~-~g--~~l~tl~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~--g~~-i~~l 494 (838)
+-+++-+. ++++-.+|.+-+-+. .. +..++++.|.-..+...++ .+.+++|+.|+.+..||+. ++. -+.-
T Consensus 127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~ 206 (339)
T KOG0280|consen 127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS 206 (339)
T ss_pred EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc
Confidence 44555554 667667777775444 33 3445788999888877653 5699999999999999986 444 3446
Q ss_pred cccccCEEEEE---eCCCEEEEEcCCCCeeeeecCC-CCC
Q 003217 495 VAHSSPVIKMA---VGAGYIFTLANHGGIRGWNVTS-PGP 530 (838)
Q Consensus 495 ~gH~~~V~sla---~dg~~l~S~S~DgtIrlWdl~s-~~~ 530 (838)
+-|+..|.+|. +.+.++++||.|-.|++||.++ +.|
T Consensus 207 kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 207 KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred eeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence 78999999997 4677999999999999999874 444
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=8e-05 Score=79.07 Aligned_cols=198 Identities=17% Similarity=0.149 Sum_probs=118.7
Q ss_pred CcccccCcccccCCCCCCCceeecCCCCCccccCceeEEEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCC
Q 003217 99 DIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGE 178 (838)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~ 178 (838)
++++|+.-.-.-+||++.| .+|-.|....+..|+-++...+-.+-+|.+..|-+-|++++...
T Consensus 185 ~e~~~~~s~~~~s~pe~n~---~~~~SlQi~~a~~CawSlni~gyhfs~G~sqqv~L~nvetg~~q-------------- 247 (425)
T KOG2695|consen 185 NEGQFHISTYNQSLPESNN---YMLCSLQIPKAWSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQ-------------- 247 (425)
T ss_pred cceEeehhhhhhccccCCC---CceeeecCCcchhhhhhhccceeeecccccceeEEEEeeccccc--------------
Confidence 4555555555555655322 22233334444455544444444544577778888887764321
Q ss_pred CCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec-CCC-EE
Q 003217 179 DGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LW 256 (838)
Q Consensus 179 ~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~ 256 (838)
.|. . .+-|+++.|...+.+|.-|...|.|-+.|+..+.. .+ ....+-.-|..+|++|..-. +++ |.
T Consensus 248 ----sf~---s-ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq--G~--~~~a~rlyh~Ssvtslq~Lq~s~q~Lm 315 (425)
T KOG2695|consen 248 ----SFQ---S-KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ--GN--GWCAQRLYHDSSVTSLQILQFSQQKLM 315 (425)
T ss_pred ----ccc---c-chhHHHHHhcccCCeeEecccCCcEEEEEeeeccc--CC--CcceEEEEcCcchhhhhhhccccceEe
Confidence 121 2 55788899987789999999999999999977521 01 11112234788999997655 444 88
Q ss_pred EeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCC-cEE
Q 003217 257 SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-SFA 335 (838)
Q Consensus 257 SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~-tI~ 335 (838)
+.+.+|+|++||+...++...+..-+ ++++.... .-+...+..+.|++++++ -.+
T Consensus 316 aS~M~gkikLyD~R~~K~~~~V~qYe------------------GHvN~~a~------l~~~v~~eeg~I~s~GdDcytR 371 (425)
T KOG2695|consen 316 ASDMTGKIKLYDLRATKCKKSVMQYE------------------GHVNLSAY------LPAHVKEEEGSIFSVGDDCYTR 371 (425)
T ss_pred eccCcCceeEeeehhhhcccceeeee------------------cccccccc------cccccccccceEEEccCeeEEE
Confidence 88899999999986544322111111 12222111 112234456677777754 578
Q ss_pred EEeccCccEEEEEe
Q 003217 336 LWDARTRELLKVFN 349 (838)
Q Consensus 336 lWD~~tg~~l~~l~ 349 (838)
+|.++.|+++.++.
T Consensus 372 iWsl~~ghLl~tip 385 (425)
T KOG2695|consen 372 IWSLDSGHLLCTIP 385 (425)
T ss_pred EEecccCceeeccC
Confidence 99999999988764
|
|
| >PRK05421 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00022 Score=76.45 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=35.3
Q ss_pred CCceeEEEEEE-cCeEEEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 676 NKGAVGLRVRV-YDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 676 nKG~v~i~~~i-~~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
-||++.+.+.+ .+..+.++|+||.+.....+.|.+++..|.+.+
T Consensus 134 ~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~~~~r~~q~~~l~~~~ 178 (263)
T PRK05421 134 PKSALITEYPLPNGRTLLVVNIHAINFSLGVDVYSKQLEPIGDQI 178 (263)
T ss_pred cceeEEEEEEeCCCCEEEEEEECccccCcChHHHHHHHHHHHHHH
Confidence 48999999998 567899999999876444577888888887754
|
|
| >TIGR03395 sphingomy sphingomyelin phosphodiesterase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00043 Score=74.98 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=52.8
Q ss_pred cccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCc------chHHHHHHHHHH
Q 003217 641 LAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDH 714 (838)
Q Consensus 641 l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~------~~~~~Rn~d~~~ 714 (838)
+..-.++|+.|-.+......+- ...||. ....+||.+.+++.+.+..+.|+|.||.+.. ..-..|.++++.
T Consensus 88 ~~~~G~~iLSr~Pi~~~~~~~f--~~~~~~-d~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~ 164 (283)
T TIGR03395 88 LEDGGVAIVSKWPIEEKIQYIF--NKGCGA-DNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNE 164 (283)
T ss_pred ccCCEEEEEECCCccccEEEEc--cCCCCC-ccccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHH
Confidence 4455678888877653321111 122332 2346899999999999999999999998753 225679999999
Q ss_pred HHHhc
Q 003217 715 VYRTM 719 (838)
Q Consensus 715 I~~~l 719 (838)
|.+-+
T Consensus 165 i~~~i 169 (283)
T TIGR03395 165 IQDFI 169 (283)
T ss_pred HHHHH
Confidence 97764
|
Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins. |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00012 Score=79.39 Aligned_cols=98 Identities=12% Similarity=0.086 Sum_probs=77.8
Q ss_pred ECCCeEEEEcC-CCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC-Ccccccc-cccccCEEEEEe-CCCE
Q 003217 437 GANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGW-VAHSSPVIKMAV-GAGY 510 (838)
Q Consensus 437 s~DgtIrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l-~gH~~~V~sla~-dg~~ 510 (838)
+....+.+|.+ ++.+ ..+.||-+.++.|+ +|+++|.++..|..||+=... .-.+.+| -||..-|..++. +++.
T Consensus 129 gD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~ 207 (390)
T KOG3914|consen 129 GDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL 207 (390)
T ss_pred CCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce
Confidence 34556778887 4544 44569999999875 588999999999999997755 3456665 479999999985 6777
Q ss_pred EEEEcCCCCeeeeecCCCCCCchhh
Q 003217 511 IFTLANHGGIRGWNVTSPGPLDSIL 535 (838)
Q Consensus 511 l~S~S~DgtIrlWdl~s~~~~d~~~ 535 (838)
|+|+|.|++||+||+.++..++..-
T Consensus 208 LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 208 LLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeecCCCCcEEEEecccCCcccccc
Confidence 8999999999999999988886543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.008 Score=62.71 Aligned_cols=195 Identities=16% Similarity=0.244 Sum_probs=106.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCC
Q 003217 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPE 281 (838)
Q Consensus 202 dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~ 281 (838)
+++.|++++.++.+..||..+| +...+..- .+.+.......++.++.++.|+.|..+|..+++...+....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG--------~~~W~~~~-~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~ 105 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTG--------KVLWRFDL-PGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT 105 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTS--------EEEEEEEC-SSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-
T ss_pred eCCEEEEEcCCCEEEEEECCCC--------CEEEEeec-cccccceeeecccccccccceeeeEecccCCcceeeeeccc
Confidence 4678888899999999999887 44443332 11111112344566888888899999998887665542110
Q ss_pred ceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeec
Q 003217 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM 360 (838)
Q Consensus 282 ~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (838)
.. ..... .... ..+.. +..+..+. .+.|..+|+++|+.+-........
T Consensus 106 ~~------------------~~~~~----~~~~-~~~~~--~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~------ 154 (238)
T PF13360_consen 106 SS------------------PPAGV----RSSS-SPAVD--GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR------ 154 (238)
T ss_dssp SS------------------CTCST----B--S-EEEEE--TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-------
T ss_pred cc------------------ccccc----cccc-CceEe--cCEEEEEeccCcEEEEecCCCcEEEEeecCCCC------
Confidence 00 00000 0000 01111 34444444 678999999999987655431100
Q ss_pred ccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCC
Q 003217 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANG 440 (838)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~Dg 440 (838)
.... +.. . ......+.+. ++.+..++.++
T Consensus 155 ----------------------~~~~--~~~--------~------------------~~~~~~~~~~-~~~v~~~~~~g 183 (238)
T PF13360_consen 155 ----------------------GSSP--ISS--------F------------------SDINGSPVIS-DGRVYVSSGDG 183 (238)
T ss_dssp ----------------------SS----EEE--------E------------------TTEEEEEECC-TTEEEEECCTS
T ss_pred ----------------------CCcc--eee--------e------------------cccccceEEE-CCEEEEEcCCC
Confidence 0000 000 0 0000012222 34666666676
Q ss_pred e-EEEEcC-CCCeeeEeecCCccEEE-EEEcCCEEEEEeeCCeEEEEeCC-Ccc
Q 003217 441 L-LLQWDP-NGNRLQDFQYLPFAVQC-LCTFGSQIWVGYMNGIVQVLDLE-GNL 490 (838)
Q Consensus 441 t-IrlWD~-~g~~l~tl~~H~~~V~s-ls~dG~~LasGs~DgtIrlWD~~-g~~ 490 (838)
. +.+ |. +|+.+-... ...+.. ...++..|++++.++.|.+||++ |+.
T Consensus 184 ~~~~~-d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 184 RVVAV-DLATGEKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp SEEEE-ETTTTEEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred eEEEE-ECCCCCEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 4 555 88 666442222 233444 56688899999899999999987 553
|
... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.14 Score=55.63 Aligned_cols=248 Identities=10% Similarity=0.123 Sum_probs=127.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee-CCCcEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~D---GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtIr 265 (838)
.+...=|+++|+++.|+++..+ |.|-.+.++...+ .-.+.....+.|+ +-+.|+++++|+ |++++ .-|.|.
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G--~Lt~ln~~~~~g~--~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG--RLTFLNRQTLPGS--PPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCC--eEEEeeccccCCC--CCeEEEECCCCCEEEEEEccCceEE
Confidence 4456679999999999999876 5777777664210 0000011112333 227899999998 56665 458899
Q ss_pred EEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC--CcEEEEeccCcc
Q 003217 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRE 343 (838)
Q Consensus 266 vWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~--~tI~lWD~~tg~ 343 (838)
+..+............. .|...+...--.++.+.+.-+.+++..|++..- +.|.++++..|.
T Consensus 115 v~p~~~dG~l~~~v~~~----------------~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~ 178 (346)
T COG2706 115 VYPLQADGSLQPVVQVV----------------KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGK 178 (346)
T ss_pred EEEcccCCccccceeee----------------ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCc
Confidence 99885421111000000 000000000001233556667777777777653 468899998776
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeec-CCcEEEEec----cCc----
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADAVRRVAA----KGG---- 414 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~-~~~v~~v~~----~g~---- 414 (838)
+...-. . . + ++...-.-+.|.++++.+.+-. .+....++. .|.
T Consensus 179 L~~~~~----~----~-----------------v---~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 179 LTPADP----A----E-----------------V---KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred cccccc----c----c-----------------c---CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 532110 0 0 0 0000011234555554443322 112111211 111
Q ss_pred ---------cccCCCceEEEEEcCCCcEEEEEC--CCeEEEEcC--CCCeeeEeec---CCc--cEEEEEEcCCEEEEEe
Q 003217 415 ---------FGDDNRRTEALTTSIDGMIWTGGA--NGLLLQWDP--NGNRLQDFQY---LPF--AVQCLCTFGSQIWVGY 476 (838)
Q Consensus 415 ---------~~~~~~~v~ala~S~dg~l~Sgs~--DgtIrlWD~--~g~~l~tl~~---H~~--~V~sls~dG~~LasGs 476 (838)
|. ...+..+|.+++||+.+-+|. ...|.++.+ .+..+..... +.. +=..++.+|++|+++.
T Consensus 231 Q~i~tlP~dF~-g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 231 QTIDTLPEDFT-GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred eeeccCccccC-CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEc
Confidence 21 234566788999999665553 236777766 3444433321 111 2224566788888877
Q ss_pred e-CCeEEEEeCC
Q 003217 477 M-NGIVQVLDLE 487 (838)
Q Consensus 477 ~-DgtIrlWD~~ 487 (838)
. +..|.++-.+
T Consensus 310 q~sd~i~vf~~d 321 (346)
T COG2706 310 QKSDNITVFERD 321 (346)
T ss_pred cCCCcEEEEEEc
Confidence 5 4578888654
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00014 Score=77.35 Aligned_cols=108 Identities=21% Similarity=0.275 Sum_probs=81.8
Q ss_pred CceEEEEEcC-CCcEEEEECCCeEEEEcC-C-----CCeeeEeecCCccEEEE---EEcCCEEEEEeeCCeEEEEeCC-C
Q 003217 420 RRTEALTTSI-DGMIWTGGANGLLLQWDP-N-----GNRLQDFQYLPFAVQCL---CTFGSQIWVGYMNGIVQVLDLE-G 488 (838)
Q Consensus 420 ~~v~ala~S~-dg~l~Sgs~DgtIrlWD~-~-----g~~l~tl~~H~~~V~sl---s~dG~~LasGs~DgtIrlWD~~-g 488 (838)
..|-++.|.. +..+.-|+.+|.|...|+ . |.|.+.+ .|.+.|+|+ .+++++|.+.+.+|+|+|||+. .
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~ 331 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT 331 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence 3444555544 445778999999999998 3 3465555 589999987 3478899998999999999986 5
Q ss_pred cc---cccccccccCEEEE----EeCCCEEEEEcCCCCeeeeecCCC
Q 003217 489 NL---LGGWVAHSSPVIKM----AVGAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 489 ~~---i~~l~gH~~~V~sl----a~dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
++ +.+..||.+.-.-+ ......+++++.|.-.|+|.+...
T Consensus 332 K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 332 KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 55 89999997644332 234567899999999999998764
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.069 Score=56.40 Aligned_cols=56 Identities=20% Similarity=0.408 Sum_probs=41.1
Q ss_pred ceEEEEEcCCCcEEEEE-CCCeEEEEcCCCCeeeEeecCCccEEEEEE---cCCEEEEEe
Q 003217 421 RTEALTTSIDGMIWTGG-ANGLLLQWDPNGNRLQDFQYLPFAVQCLCT---FGSQIWVGY 476 (838)
Q Consensus 421 ~v~ala~S~dg~l~Sgs-~DgtIrlWD~~g~~l~tl~~H~~~V~sls~---dG~~LasGs 476 (838)
....++++.+|.||++. ..+.|.++|.+|+.+..+......++++++ +.+.|++.+
T Consensus 185 ~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 185 YPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 35678899999988775 467799999999998888776567888887 445666644
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0058 Score=69.43 Aligned_cols=300 Identities=18% Similarity=0.311 Sum_probs=150.5
Q ss_pred CceeecCCCCCccccCceeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeE
Q 003217 117 PSLEVKPHPLRETQIGCFLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVM 195 (838)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~ 195 (838)
..+++.+.|+++ .+.++..+ ..+||+|+|.+|.+.+.+.-... ...++.+ ..-|.
T Consensus 195 kalql~s~~~dk-----~I~al~~d~qg~LWVGTdqGv~~~e~~G~~~s---------------n~~~~lp----~~~I~ 250 (671)
T COG3292 195 KALQLASPPLDK-----AINALIADVQGRLWVGTDQGVYLQEAEGWRAS---------------NWGPMLP----SGNIL 250 (671)
T ss_pred eEEEcCCCcchh-----hHHHHHHHhcCcEEEEeccceEEEchhhcccc---------------ccCCCCc----chhee
Confidence 334555555553 33344444 55999999999999987542111 1122222 34577
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc--cccEEEEEEecCCCEEEeeCCCcEEEEECCCcc
Q 003217 196 CMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH--RGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 196 ~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH--~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~ 273 (838)
.+.-|.+ +.+|.|+..|..|.--...+. .....+-| -..|.++..+.+|.||.++.++.+++=+-+-..
T Consensus 251 ll~qD~q-G~lWiGTenGl~r~~l~rq~L--------q~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~ 321 (671)
T COG3292 251 LLVQDAQ-GELWIGTENGLWRTRLPRQGL--------QIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKR 321 (671)
T ss_pred eeecccC-CCEEEeecccceeEecCCCCc--------cccccccCCccccccceeeccCCCEeeeccCceEEEecchhhh
Confidence 6666654 568999999976543333321 11112222 357899999999999999999887765431110
Q ss_pred eeeecCCCceeeeEEEEeec-----e-------eecccceeccce-eee---ecCCeEEEEEcCCCCEEEEeCCC-cEEE
Q 003217 274 KALSLKPEERHTAALIVERS-----Y-------IDLRSHLSVNGF-SSI---LTSDIKNLLSDHSRAKVWSAGFL-SFAL 336 (838)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~s-----~-------~~l~~~~~~~~~-~~~---~s~~v~~las~~~~~~V~s~s~~-tI~l 336 (838)
..+.....+.......+..+ . ..+-..+..+.. .++ -...+..+..+. +.++|-++-+ ++..
T Consensus 322 ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsr 400 (671)
T COG3292 322 MAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDS-RGRLWLGSMQNGLSR 400 (671)
T ss_pred eeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhcc-CCcEEEEecccchhh
Confidence 00000000000000000000 0 000000000000 000 012233334443 6677777754 6777
Q ss_pred EeccC-ccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccC--
Q 003217 337 WDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG-- 413 (838)
Q Consensus 337 WD~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g-- 413 (838)
|+..+ +..+..-.+ ..++ +++ .+.-.+ ..+.|+|+.+|+.....++
T Consensus 401 l~n~n~~avlde~ag--------l~ss--------~V~--------------aived~-dnsLWIGTs~Glvk~~pe~~~ 449 (671)
T COG3292 401 LDNKNEWAVLDEDAG--------LPSS--------EVS--------------AIVEDP-DNSLWIGTSGGLVKRDPESGR 449 (671)
T ss_pred hccCCcccccccccC--------Cccc--------cee--------------eeeecC-CCCEEEeccCCeEecCccccc
Confidence 77665 222111000 0000 000 011111 2246889998887766421
Q ss_pred --------ccccCCCceEEEEEcCCCcEEEEECCCeEEEEcCCCCee-eEeecCCccEEEEEE-cCCEEEEEeeCCeEE
Q 003217 414 --------GFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRL-QDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQ 482 (838)
Q Consensus 414 --------~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~~g~~l-~tl~~H~~~V~sls~-dG~~LasGs~DgtIr 482 (838)
....+...+..+...++|.||.++.+| |..|+..++.. -.+.....+-+++.+ .+.++|.+..-|.+|
T Consensus 450 v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g~g-va~~~sq~~~~~~~l~~~~q~qy~f~~~~~d~vw~~~~Rg~vr 527 (671)
T COG3292 450 VLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAGSG-VAAWESQRRMFVPILDLTGQRQYSFVPVGGDEVWVHRLRGLVR 527 (671)
T ss_pred hhcccccccCcCCcchhhhhccCCCCceEEEecce-eeeeccccceecccccccceeeEEEEEccCceEeeeeeceeee
Confidence 111233457789999999999999998 89999866432 222222233334443 577888876544443
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00052 Score=85.88 Aligned_cols=138 Identities=14% Similarity=0.103 Sum_probs=105.1
Q ss_pred CceEEEEEcCCCc-EEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEEcCCEEEEEe---eCCeEEEEeCC--Cc--cc
Q 003217 420 RRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGY---MNGIVQVLDLE--GN--LL 491 (838)
Q Consensus 420 ~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~dG~~LasGs---~DgtIrlWD~~--g~--~i 491 (838)
.+|..+.|+..|. ...+-.||.+-+|.+.-+.....+.|+.....+.+-|..+++++ .++.+.+||.- +. ++
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v 2331 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLV 2331 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCccccee
Confidence 4455566666554 56667799999999987777778889998888888888888766 37899999953 33 45
Q ss_pred ccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCCCchhhhhhhhccccccccccceeeEEEEEEeCC
Q 003217 492 GGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQ 563 (838)
Q Consensus 492 ~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~~d~~~~~~l~~r~~~y~~~~~~~i~~~twNv~~ 563 (838)
. ++|.+.+++++. .-+.++|||.+|-|++||++.....+.+.. +. ...|...++.+..++.|.+.+
T Consensus 2332 ~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--~~--~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2332 H--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--LD--TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred e--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--hh--hhheeeccCcccceEEEEccc
Confidence 5 899999999874 556899999999999999987655555443 22 455667777778888898874
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.024 Score=63.60 Aligned_cols=109 Identities=14% Similarity=0.143 Sum_probs=78.1
Q ss_pred CCceEEEEEcCCCc---EEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEEcCCEEEEEee---CCeEEEEeCCCc--c
Q 003217 419 NRRTEALTTSIDGM---IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYM---NGIVQVLDLEGN--L 490 (838)
Q Consensus 419 ~~~v~ala~S~dg~---l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~dG~~LasGs~---DgtIrlWD~~g~--~ 490 (838)
...|..+.+.|.+. +++|-.+-++-++|+.|+....+-.....-..+++.+++++.++- .|.|.+||..|+ +
T Consensus 274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred cccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence 45677788888765 566678889999999988655443322222234677888888775 579999999875 4
Q ss_pred cccccccccCEEEEEeCCCEEEEEc------CCCCeeeeecCC
Q 003217 491 LGGWVAHSSPVIKMAVGAGYIFTLA------NHGGIRGWNVTS 527 (838)
Q Consensus 491 i~~l~gH~~~V~sla~dg~~l~S~S------~DgtIrlWdl~s 527 (838)
+..+.|.+..+..-.+|++++.+.- -|..|++|++..
T Consensus 354 ~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 354 AGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 5577777766666667888776543 488999999864
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.1 Score=58.23 Aligned_cols=207 Identities=14% Similarity=0.193 Sum_probs=114.2
Q ss_pred CCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCccCCCCCcceeEEeccc-----------cccEEEEEEecCCC-EEEe
Q 003217 192 SSVMCMVGDEASGVVWSGHR-DGRIMCWKMNARLLDSDDGFGEVLSWQAH-----------RGPVLSLCISSYGD-LWSG 258 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~-DGtIrvWd~~~g~~~~~~~~~~~~~l~gH-----------~~~V~slafs~dG~-L~Sg 258 (838)
.....++++|++++|+++.+ +|+|-++++.... .+........| .....++.|+|||+ ++..
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g-----~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG-----SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS-----EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCc-----ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 34556999999999999986 7899999998631 01111111111 23468899999998 5543
Q ss_pred -eCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEE
Q 003217 259 -SEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFA 335 (838)
Q Consensus 259 -S~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~ 335 (838)
-....|.+++++.....+.. ...+ .+ -+-..-+.+++++++..++... ..+|.
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~------~~~~-------~~-----------~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~ 217 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTP------VDSI-------KV-----------PPGSGPRHLAFSPDGKYAYVVNELSNTVS 217 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEE------EEEE-------EC-----------STTSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred ecCCCEEEEEEEeCCCceEEE------eecc-------cc-----------ccCCCCcEEEEcCCcCEEEEecCCCCcEE
Confidence 33457899988653321211 0000 00 0012356778888877776665 35677
Q ss_pred EEecc--CccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccC
Q 003217 336 LWDAR--TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG 413 (838)
Q Consensus 336 lWD~~--tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g 413 (838)
++++. ++.+ +... .+... +.
T Consensus 218 v~~~~~~~g~~-~~~~--------------------------~~~~~------------~~------------------- 239 (345)
T PF10282_consen 218 VFDYDPSDGSL-TEIQ--------------------------TISTL------------PE------------------- 239 (345)
T ss_dssp EEEEETTTTEE-EEEE--------------------------EEESC------------ET-------------------
T ss_pred EEeecccCCce-eEEE--------------------------Eeeec------------cc-------------------
Confidence 77765 3432 1110 00000 00
Q ss_pred ccccCCCceEEEEEcCCCc-EEE-EECCCeEEEEcCC---CC--eeeEeecCCccEEEE--EEcCCEEEEEe-eCCeEEE
Q 003217 414 GFGDDNRRTEALTTSIDGM-IWT-GGANGLLLQWDPN---GN--RLQDFQYLPFAVQCL--CTFGSQIWVGY-MNGIVQV 483 (838)
Q Consensus 414 ~~~~~~~~v~ala~S~dg~-l~S-gs~DgtIrlWD~~---g~--~l~tl~~H~~~V~sl--s~dG~~LasGs-~DgtIrl 483 (838)
.+. .......++++|||+ |++ .-.+++|-+++++ |+ .++.+......-..+ .++|++|+++. .++.|.+
T Consensus 240 ~~~-~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 240 GFT-GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp TSC-SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred ccc-ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEE
Confidence 000 001344688999998 444 4356789999982 32 333443333334555 45899999887 4779999
Q ss_pred EeC
Q 003217 484 LDL 486 (838)
Q Consensus 484 WD~ 486 (838)
|++
T Consensus 319 f~~ 321 (345)
T PF10282_consen 319 FDI 321 (345)
T ss_dssp EEE
T ss_pred EEE
Confidence 975
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.15 Score=56.85 Aligned_cols=251 Identities=12% Similarity=0.162 Sum_probs=135.7
Q ss_pred CeEEEEEcCCCCEEEEEeC----CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee-CCCcEEE
Q 003217 193 SVMCMVGDEASGVVWSGHR----DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIKI 266 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~----DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtIrv 266 (838)
....|+++|++++|++... +|.|-.|++.... ..+..+.+.......-..++++|+|+ |+++. .+|+|-+
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~----g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v 113 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT----GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSV 113 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT----TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc----ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEE
Confidence 4456889999999999987 4688888877520 01122222221233456799999998 55554 6899999
Q ss_pred EECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCcc-
Q 003217 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRE- 343 (838)
Q Consensus 267 Wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~- 343 (838)
+++.......... .. +...+.+..... -......++.+++++..|+... .+.|.++++....
T Consensus 114 ~~l~~~g~l~~~~------~~-------~~~~g~g~~~~r--q~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~ 178 (345)
T PF10282_consen 114 FPLDDDGSLGEVV------QT-------VRHEGSGPNPDR--QEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTG 178 (345)
T ss_dssp EEECTTSEEEEEE------EE-------EESEEEESSTTT--TSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-
T ss_pred EEccCCcccceee------ee-------cccCCCCCcccc--cccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCc
Confidence 9996521111000 00 000000000000 0123456778888888887764 2467777765433
Q ss_pred -EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCce
Q 003217 344 -LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (838)
Q Consensus 344 -~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (838)
+...- . +.. ......
T Consensus 179 ~l~~~~----------~-----------------~~~-------------------------------------~~G~GP 194 (345)
T PF10282_consen 179 KLTPVD----------S-----------------IKV-------------------------------------PPGSGP 194 (345)
T ss_dssp TEEEEE----------E-----------------EEC-------------------------------------STTSSE
T ss_pred eEEEee----------c-----------------ccc-------------------------------------ccCCCC
Confidence 21100 0 000 001123
Q ss_pred EEEEEcCCCc-EEEE-ECCCeEEEEcCC---C--CeeeEeecC------CccEE--EEEEcCCEEEEEee-CCeEEEEeC
Q 003217 423 EALTTSIDGM-IWTG-GANGLLLQWDPN---G--NRLQDFQYL------PFAVQ--CLCTFGSQIWVGYM-NGIVQVLDL 486 (838)
Q Consensus 423 ~ala~S~dg~-l~Sg-s~DgtIrlWD~~---g--~~l~tl~~H------~~~V~--sls~dG~~LasGs~-DgtIrlWD~ 486 (838)
+.++|+|||+ ++.. -.+++|.+++.. | +.++++... ..... .+++||++|+++.. ..+|-++++
T Consensus 195 Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred cEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 4567888876 4333 356778888773 2 122332211 11233 34678999998774 679999998
Q ss_pred C---Ccc--cccccccccCEEEEE--eCCCEEEEEc-CCCCeeeeecC
Q 003217 487 E---GNL--LGGWVAHSSPVIKMA--VGAGYIFTLA-NHGGIRGWNVT 526 (838)
Q Consensus 487 ~---g~~--i~~l~gH~~~V~sla--~dg~~l~S~S-~DgtIrlWdl~ 526 (838)
. |++ +......-..-..++ ++|++|+.+. .+++|.+|++.
T Consensus 275 d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 275 DPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp CTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred ecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 3 333 333322223355565 5889887654 67789999864
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.032 Score=64.26 Aligned_cols=66 Identities=12% Similarity=-0.020 Sum_probs=39.8
Q ss_pred EEEEcCCCc-EEEEECC---CeEEEEcCCCCeeeEeecCCccEE--EEEEcCCEEEEEee---CCeEEEEeCCCc
Q 003217 424 ALTTSIDGM-IWTGGAN---GLLLQWDPNGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYM---NGIVQVLDLEGN 489 (838)
Q Consensus 424 ala~S~dg~-l~Sgs~D---gtIrlWD~~g~~l~tl~~H~~~V~--sls~dG~~LasGs~---DgtIrlWD~~g~ 489 (838)
...+||||+ |+..+.+ ..|.+||+.+...+.+......+. ..++||++|+..+. ...|.+||+.+.
T Consensus 331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 456889887 5544432 369999995433344443322333 34568997775443 357888898754
|
|
| >TIGR00633 xth exodeoxyribonuclease III (xth) | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0019 Score=68.51 Aligned_cols=37 Identities=30% Similarity=0.526 Sum_probs=25.7
Q ss_pred eEEEEEEeCCCCCCcccc-cccccCCCCCceEEEEEeecccC
Q 003217 554 ILAGTWNVGQGRASQDAL-ISWLGSAASDVGIVVVGLQEVEM 594 (838)
Q Consensus 554 i~~~twNv~~~~~~~~~l-~~wl~~~~~~~di~vig~QE~~~ 594 (838)
|-+.|||+++.......+ .+||.. .++||+ +|||+..
T Consensus 1 lri~t~Nv~g~~~~~~~~~~~~l~~--~~~DIv--~LQE~~~ 38 (255)
T TIGR00633 1 MKIISWNVNGLRARLHKLFLDWLKE--EQPDVL--CLQETKV 38 (255)
T ss_pred CEEEEEecccHHHHhhccHHHHHHh--cCCCEE--EEEeccC
Confidence 357899999876544555 677774 355664 6999864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.05 Score=62.70 Aligned_cols=103 Identities=12% Similarity=-0.036 Sum_probs=58.7
Q ss_pred EEEEcCCCc-EEEEE-CCCeEEEEc--CC--CCeeeEeecCCccEE--EEEEcCCEEEEEeeC---CeEEEEeCCCcccc
Q 003217 424 ALTTSIDGM-IWTGG-ANGLLLQWD--PN--GNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMN---GIVQVLDLEGNLLG 492 (838)
Q Consensus 424 ala~S~dg~-l~Sgs-~DgtIrlWD--~~--g~~l~tl~~H~~~V~--sls~dG~~LasGs~D---gtIrlWD~~g~~i~ 492 (838)
..++||||+ |+..+ .+|...+|. +. +...+.++.+...+. ..++||++|+..+.+ ..|.+||+++...+
T Consensus 285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence 356889987 66554 456555554 42 334455554444443 356799988876543 47999999854333
Q ss_pred cccccccCEEEE--EeCCCEEE-EEcCC--CCeeeeecC
Q 003217 493 GWVAHSSPVIKM--AVGAGYIF-TLANH--GGIRGWNVT 526 (838)
Q Consensus 493 ~l~gH~~~V~sl--a~dg~~l~-S~S~D--gtIrlWdl~ 526 (838)
.+......+... ++||++|+ ++..+ ..|.+|++.
T Consensus 365 ~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 365 QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 443322233333 35888776 44333 346666654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.097 Score=59.54 Aligned_cols=95 Identities=22% Similarity=0.245 Sum_probs=62.0
Q ss_pred CCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-Ccccccc--cccccCEEEEE
Q 003217 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW--VAHSSPVIKMA 505 (838)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l--~gH~~~V~sla 505 (838)
++.++.++.+|.+...|. +|+.+=.... .....+..++.+|+.++.+|.|..+|.+ |+.+=.. ..+ ....+..
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~sp~ 332 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH-RLLTAPV 332 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCC-CcccCCE
Confidence 677888888999999999 7875533221 1222345678889999999999999987 5532111 111 1122223
Q ss_pred eCCCEEEEEcCCCCeeeeecCC
Q 003217 506 VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 506 ~dg~~l~S~S~DgtIrlWdl~s 527 (838)
..+.+++.++.||.|.+.|..+
T Consensus 333 v~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 333 LYNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred EECCEEEEEeCCCEEEEEECCC
Confidence 3466788888999988887654
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.008 Score=64.26 Aligned_cols=105 Identities=12% Similarity=0.091 Sum_probs=64.6
Q ss_pred eEEEEEcCCC--cEEEEECCCeEEEEcCCC--Cee---eEeecCC------------ccEEEEEE--cCCEEEEEeeCCe
Q 003217 422 TEALTTSIDG--MIWTGGANGLLLQWDPNG--NRL---QDFQYLP------------FAVQCLCT--FGSQIWVGYMNGI 480 (838)
Q Consensus 422 v~ala~S~dg--~l~Sgs~DgtIrlWD~~g--~~l---~tl~~H~------------~~V~sls~--dG~~LasGs~Dgt 480 (838)
|++-.|+|.. .++-.|.-|+|||-|+.. -|. +.|.... ..|..+.+ +|++|++-+. -+
T Consensus 216 ITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-lt 294 (433)
T KOG1354|consen 216 ITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LT 294 (433)
T ss_pred HhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ce
Confidence 3444566643 345556689999999842 222 2222111 23334433 6889988532 59
Q ss_pred EEEEeCC--Ccccccccccc------------cCEEE---EEeC--CCEEEEEcCCCCeeeeecCC
Q 003217 481 VQVLDLE--GNLLGGWVAHS------------SPVIK---MAVG--AGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 481 IrlWD~~--g~~i~~l~gH~------------~~V~s---la~d--g~~l~S~S~DgtIrlWdl~s 527 (838)
|+|||+. .+++.+..-|. +.|.. +.+. +.+++|||..+..|++++..
T Consensus 295 vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 295 VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCC
Confidence 9999985 56677666664 33322 2344 44899999999999998544
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0059 Score=64.05 Aligned_cols=115 Identities=13% Similarity=0.270 Sum_probs=79.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC-C-EEEeeCCCcEEEEECCC
Q 003217 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 194 V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvWd~~~ 271 (838)
-.|+.+++.+..++++-.+|.+-+-+... ...+..+.|++|.-..+...|+... + ++|||+|+.+.-||...
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~------~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~ 197 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETE------MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI 197 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecce------eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence 45788888899999999999987444333 2335566899999999999998654 4 57999999999999862
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEc-CCCCEEEEeCC-CcEEEEeccC
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD-HSRAKVWSAGF-LSFALWDART 341 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~-~~~~~V~s~s~-~tI~lWD~~t 341 (838)
.+.+..+. ...+..| |.++.++ +....|++|++ ..|++||.+.
T Consensus 198 -p~~~i~~n------------------~kvH~~G--------V~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 198 -PKTFIWHN------------------SKVHTSG--------VVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred -Ccceeeec------------------ceeeecc--------eEEEecCCCCCceEEEeccccceeeeehhc
Confidence 11222111 1123333 3344443 34567888885 6899999874
|
|
| >TIGR00195 exoDNase_III exodeoxyribonuclease III | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.004 Score=66.34 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=26.4
Q ss_pred eEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccC
Q 003217 554 ILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEM 594 (838)
Q Consensus 554 i~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~ 594 (838)
|-+.|||+++.+.....+..||.. .++||+ +|||+..
T Consensus 1 mri~t~Ni~g~~~~~~~~~~~l~~--~~~DIi--~LQE~~~ 37 (254)
T TIGR00195 1 MKIISWNVNGLRARLHKGLAWLKE--NQPDVL--CLQETKV 37 (254)
T ss_pred CEEEEEEcCcHHHhHHHHHHHHHh--cCCCEE--EEEeccc
Confidence 357899999876555566778875 456665 5999864
|
The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.068 Score=62.05 Aligned_cols=79 Identities=18% Similarity=0.300 Sum_probs=62.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCC-------CCcceeEEeccccccEEEEEEecCCC-EEEeeCCCc
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSD-------DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG 263 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~-------~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt 263 (838)
....|+.|....++||.|+.||..+|-.+++...+.. ..+..-+++.||.+.|.-+.+....+ |-|...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 3578999999999999999999999999887542111 12222357899999999999998766 667778999
Q ss_pred EEEEECC
Q 003217 264 IKIWPWE 270 (838)
Q Consensus 264 IrvWd~~ 270 (838)
|-||-+-
T Consensus 95 IiVWmly 101 (1189)
T KOG2041|consen 95 IIVWMLY 101 (1189)
T ss_pred EEEEeee
Confidence 9999873
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.96 Score=50.75 Aligned_cols=125 Identities=14% Similarity=0.070 Sum_probs=79.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDG-RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DG-tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
.+.|.-..+..+++-++.|..|| .+-++|..++ +...+.+.-+.|.+|..++||+ ++.+-.-..|-+.|
T Consensus 359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---------e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---------EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred CCceEEEEEccCCcceEEeccCCceEEEEecCCc---------eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 44566666766777899999999 8999999986 3455566678899999999999 55665556777778
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVF 348 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l 348 (838)
++++...+.-..+...... + .-+.+.+++|.+-..+.+ -+.|+|+|+.+++...+-
T Consensus 430 idngnv~~idkS~~~lItd------------------f--~~~~nsr~iAYafP~gy~----tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 430 IDNGNVRLIDKSEYGLITD------------------F--DWHPNSRWIAYAFPEGYY----TQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred ecCCCeeEecccccceeEE------------------E--EEcCCceeEEEecCccee----eeeEEEEecCCCeEEEec
Confidence 8775433221111111111 1 113444555543222111 157999999998875543
|
|
| >KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0071 Score=62.60 Aligned_cols=40 Identities=20% Similarity=0.384 Sum_probs=33.3
Q ss_pred eEEEEEEcCeEEEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 680 VGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 680 v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
-.+...|.+..+||+++||.+-.+.--+|.++|...+.++
T Consensus 195 ~I~Ev~v~G~Kl~l~tsHLEStr~h~P~r~~qF~~~~~k~ 234 (349)
T KOG2756|consen 195 LIVEVNVSGNKLCLMTSHLESTRGHAPERMNQFKMVLKKM 234 (349)
T ss_pred EEEEEeecCceEEEEeccccCCCCCChHHHHHHHHHHHHH
Confidence 3456677888999999999998888888999999887775
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.15 Score=58.01 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=55.8
Q ss_pred EEEEEcCCCcE-E-EEEC--CCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEee------CCeEEEEeCCCccc
Q 003217 423 EALTTSIDGMI-W-TGGA--NGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYM------NGIVQVLDLEGNLL 491 (838)
Q Consensus 423 ~ala~S~dg~l-~-Sgs~--DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~------DgtIrlWD~~g~~i 491 (838)
.++.|+|.|.+ + .|-+ -|.|-+||+ +-+++..+..-...+..-++||+++++++. |+.|+||+..|.++
T Consensus 315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 46789999984 3 3433 378999999 778898888877777777899999988873 89999999998764
Q ss_pred c
Q 003217 492 G 492 (838)
Q Consensus 492 ~ 492 (838)
.
T Consensus 395 ~ 395 (566)
T KOG2315|consen 395 H 395 (566)
T ss_pred e
Confidence 4
|
|
| >PRK13911 exodeoxyribonuclease III; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.012 Score=62.64 Aligned_cols=38 Identities=26% Similarity=0.446 Sum_probs=27.6
Q ss_pred eEEEEEEeCCCCCCc-ccccccccCCCCCceEEEEEeecccCc
Q 003217 554 ILAGTWNVGQGRASQ-DALISWLGSAASDVGIVVVGLQEVEMG 595 (838)
Q Consensus 554 i~~~twNv~~~~~~~-~~l~~wl~~~~~~~di~vig~QE~~~~ 595 (838)
|-+.|||||+-+... ..+.+||.. .+||| |+|||.-+.
T Consensus 1 mki~swNVNgir~~~~~~~~~~l~~--~~~DI--iclQEtK~~ 39 (250)
T PRK13911 1 MKLISWNVNGLRACMTKGFMDFFNS--VDADV--FCIQESKMQ 39 (250)
T ss_pred CEEEEEEeCChhHhhhhhHHHHHHh--cCCCE--EEEEeeccc
Confidence 347899999887644 358889985 45665 579998653
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0016 Score=67.15 Aligned_cols=72 Identities=21% Similarity=0.338 Sum_probs=60.3
Q ss_pred CeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC-C-CEEEeeCCCcEEEEEC
Q 003217 193 SVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-G-DLWSGSEGGGIKIWPW 269 (838)
Q Consensus 193 ~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G-~L~SgS~DgtIrvWd~ 269 (838)
.|.|++-+|. ..++..|+.||.+-+||+.... ...-.+++|+.+|+-|-|.|. + +|+++|+||.+--||.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda 253 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA 253 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEccccc-------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence 4999999885 4678889999999999998752 444557899999999999985 3 3999999999999987
Q ss_pred CC
Q 003217 270 EA 271 (838)
Q Consensus 270 ~~ 271 (838)
.+
T Consensus 254 s~ 255 (319)
T KOG4714|consen 254 ST 255 (319)
T ss_pred CC
Confidence 54
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0048 Score=71.41 Aligned_cols=68 Identities=21% Similarity=0.381 Sum_probs=52.5
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec--CCCEEEeeCCCcEEEEECCC
Q 003217 196 CMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGDLWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 196 ~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--dG~L~SgS~DgtIrvWd~~~ 271 (838)
-|.++- ++..+|+ +....|++||...|. ..+..+++|...|+++.|.. .+.+++.+.|+|||.||.+.
T Consensus 163 qVkwnyk~p~vlas-shg~~i~vwd~r~gs-------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 163 QVKWNYKDPNVLAS-SHGNDIFVWDLRKGS-------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred eeeecccCcchhhh-ccCCceEEEeccCCC-------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 355543 3345554 455679999998874 56778899999999999976 46699999999999999854
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.98 Score=47.57 Aligned_cols=87 Identities=23% Similarity=0.302 Sum_probs=57.1
Q ss_pred CceEEEEEcCCCc-EE-EEECCCeEEEEcCC--CCee---eEe---ecCCccEEEEEEcCC-EEEEEe-eCCeEEEEeCC
Q 003217 420 RRTEALTTSIDGM-IW-TGGANGLLLQWDPN--GNRL---QDF---QYLPFAVQCLCTFGS-QIWVGY-MNGIVQVLDLE 487 (838)
Q Consensus 420 ~~v~ala~S~dg~-l~-Sgs~DgtIrlWD~~--g~~l---~tl---~~H~~~V~sls~dG~-~LasGs-~DgtIrlWD~~ 487 (838)
.....+++++|+. |+ +-+..+.|..++.. +..+ +.+ ..-.+..-.++.|.. .||++. ..+.|.++|.+
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 4456799999997 54 55567788888872 3312 222 222223556777532 556554 58899999999
Q ss_pred CcccccccccccCEEEEEe
Q 003217 488 GNLLGGWVAHSSPVIKMAV 506 (838)
Q Consensus 488 g~~i~~l~gH~~~V~sla~ 506 (838)
|+++..+......++++++
T Consensus 214 G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 214 GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp SCEEEEEE-SSSSEEEEEE
T ss_pred ccEEEEEcCCCCCEEEEEE
Confidence 9988877777668888887
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.23 Score=57.11 Aligned_cols=71 Identities=8% Similarity=0.042 Sum_probs=45.7
Q ss_pred CeEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCC--cE
Q 003217 193 SVMCMVGDEASGV-VWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGG--GI 264 (838)
Q Consensus 193 ~V~~la~s~dg~~-LaSGs~D---GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~Dg--tI 264 (838)
....-.|+|||+. ++..+.+ ..|.++|+.++. ...+....+.+.+..|||||+ | ++.+.++ .|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~---------~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK---------KEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc---------EEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 6678899999984 7765554 357788888862 222222455566778999997 4 4555554 45
Q ss_pred EEEECCCc
Q 003217 265 KIWPWEAI 272 (838)
Q Consensus 265 rvWd~~~~ 272 (838)
-++++.++
T Consensus 260 y~~dl~~g 267 (419)
T PRK04043 260 YLYDTNTK 267 (419)
T ss_pred EEEECCCC
Confidence 55566543
|
|
| >smart00476 DNaseIc deoxyribonuclease I | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.014 Score=62.66 Aligned_cols=128 Identities=16% Similarity=0.057 Sum_probs=66.1
Q ss_pred eeEEEEEEeCCCCCCc---ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCC
Q 003217 553 KILAGTWNVGQGRASQ---DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDD 629 (838)
Q Consensus 553 ~i~~~twNv~~~~~~~---~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~ 629 (838)
.+.++|||+-.-.... ....+.+......+|| ||+||+.-..+ .+.+ .-.+.|.+. .
T Consensus 17 ~l~I~SfNIr~fgd~k~~~~~r~~~i~~il~~~DI--iglQEV~d~q~----~~l~------------~ll~~Ln~~--~ 76 (276)
T smart00476 17 SLRICAFNIQSFGDSKMSNATLMSIIVKILSRYDI--ALVQEVRDSDL----SAVP------------KLMDQLNSD--S 76 (276)
T ss_pred cEEEEEEECcccCCccccHHHHHHHHHHHhccCCE--EEEEEeecchh----HHHH------------HHHHHHhhc--C
Confidence 4889999996221111 1112222222235676 58999853211 0111 012223322 2
Q ss_pred CCCEEEEeeeecc----cEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCe---EEEEEeccccCC
Q 003217 630 GSTFERVGSRQLA----GLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDR---IMCFVNCHFAAH 701 (838)
Q Consensus 630 ~~~y~~v~s~~l~----g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~---~~~Fv~~HLaa~ 701 (838)
+..|..+++..++ +-...+|-|++....+..-.....+-|... .=..=...++|+...+ .|.+||+|+...
T Consensus 77 ~~~Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f~d~~~~~~~-~F~ReP~~~~F~~~~~~~~~F~li~~H~~p~ 154 (276)
T smart00476 77 PNTYSYVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLYDDGCECGND-VFSREPFVVKFSSPSTAVKEFVIVPLHTTPE 154 (276)
T ss_pred CCCceEEecCCCCCCCCCEEEEEEEecceEEEcccceecCCCCCccc-cccccceEEEEEeCCCCCccEEEEEecCChH
Confidence 3478888887664 467778888875433322111100001111 1134456677777664 799999999874
|
Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus. |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.02 Score=60.91 Aligned_cols=65 Identities=8% Similarity=0.006 Sum_probs=43.1
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCC
Q 003217 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 197 la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~ 271 (838)
..|||+|++|||.+.- .+.+-|.++- +..+.+. --..|.-+-+..|.. |-..+.|+.|-+|++..
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tl--------q~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q 80 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETL--------QLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ 80 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchh--------hHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeec
Confidence 4689999999999876 5556666652 1111110 023455667777765 45788999999999854
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0042 Score=43.05 Aligned_cols=37 Identities=38% Similarity=0.636 Sum_probs=32.2
Q ss_pred ceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
+....+.+|...|+++.+.+++. +++|+.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44567789999999999999877 68999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.19 Score=53.07 Aligned_cols=72 Identities=11% Similarity=0.106 Sum_probs=45.1
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc-ccccEEEEEEecCC-------CEEEeeCCCcEEE
Q 003217 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA-HRGPVLSLCISSYG-------DLWSGSEGGGIKI 266 (838)
Q Consensus 195 ~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~g-H~~~V~slafs~dG-------~L~SgS~DgtIrv 266 (838)
.-|+||||+.+||.+...|+|+++|+.+... ........+.+ -..+|.+|.|.+.- +|+.-..+|.+|-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l---f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSEL---FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEeccccee---EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 3589999999999999999999999987421 00000011111 14678888887643 2444445555555
Q ss_pred EEC
Q 003217 267 WPW 269 (838)
Q Consensus 267 Wd~ 269 (838)
+-+
T Consensus 124 y~v 126 (282)
T PF15492_consen 124 YLV 126 (282)
T ss_pred EEE
Confidence 543
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.18 Score=57.85 Aligned_cols=110 Identities=21% Similarity=0.427 Sum_probs=69.9
Q ss_pred CCccccCceeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCC
Q 003217 126 LRETQIGCFLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG 204 (838)
Q Consensus 126 ~~~~~~~~~~~~l~~~-~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~ 204 (838)
-|+.-.+.++.+|..+ .+.||++++.++..+|..+++... -+..|+ .-+|..++.|- ++
T Consensus 158 ~r~ll~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalq-------------l~s~~~------dk~I~al~~d~-qg 217 (671)
T COG3292 158 VRPLLKDTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQ-------------LASPPL------DKAINALIADV-QG 217 (671)
T ss_pred ccccccCccceeeeeeccCcEEEecCCcceEEccccceEEE-------------cCCCcc------hhhHHHHHHHh-cC
Confidence 3555566778888887 449999999999999987654332 111222 12566666664 45
Q ss_pred EEEEEeCCCcEEEEECCCCccCCCCCcceeEEe--ccccccEEEEEEecCCCEEEeeCCCcEE
Q 003217 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGDLWSGSEGGGIK 265 (838)
Q Consensus 205 ~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG~L~SgS~DgtIr 265 (838)
.||.|+.+|.. +-+.++. ....+ .-..+.|+.+.-+..|.+|.|++.|..|
T Consensus 218 ~LWVGTdqGv~-~~e~~G~---------~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r 270 (671)
T COG3292 218 RLWVGTDQGVY-LQEAEGW---------RASNWGPMLPSGNILLLVQDAQGELWIGTENGLWR 270 (671)
T ss_pred cEEEEeccceE-EEchhhc---------cccccCCCCcchheeeeecccCCCEEEeeccccee
Confidence 68999999943 3333331 01110 0124567777777788899999887554
|
|
| >COG3568 ElsH Metal-dependent hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.025 Score=59.64 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=41.3
Q ss_pred ccCceeeceeec--ccCcccCCCceeEEEEEEc-CeEEEEEeccccCCcchHHHHHHHHHHHHHh
Q 003217 657 YVGDVDVAAVPC--GFGRAIGNKGAVGLRVRVY-DRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718 (838)
Q Consensus 657 ~i~~v~~~~v~~--G~~~~~gnKG~v~i~~~i~-~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~ 718 (838)
.|.+|+...+++ |+- -.|++-+.+... +..+-++|.||.= --+.|.++.+.|+..
T Consensus 101 pi~~v~~~~lp~~~~~~----~Rgal~a~~~~~~g~~l~V~~~HL~l---~~~~R~~Q~~~L~~~ 158 (259)
T COG3568 101 PIRDVENLALPDPTGLE----PRGALLAEIELPGGKPLRVINAHLGL---SEESRLRQAAALLAL 158 (259)
T ss_pred cccchhhccCCCCCCCC----CceeEEEEEEcCCCCEEEEEEEeccc---cHHHHHHHHHHHHhh
Confidence 356777666664 442 478999999884 7799999999993 345688899888883
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.75 Score=49.86 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=40.9
Q ss_pred EEEcC-CCCEEEEEeCCCc-EEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEE-----eeCCCcEEEEE
Q 003217 197 MVGDE-ASGVVWSGHRDGR-IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS-----GSEGGGIKIWP 268 (838)
Q Consensus 197 la~s~-dg~~LaSGs~DGt-IrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S-----gS~DgtIrvWd 268 (838)
++.+| ....++-+-.-|+ ..+||..++..-..-....-+.|-|| -+||+||+ |++ .+..|.|-|||
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 45566 4566777777775 45788877620000000112344566 47999998 554 34468999999
Q ss_pred CC
Q 003217 269 WE 270 (838)
Q Consensus 269 ~~ 270 (838)
+.
T Consensus 84 ~~ 85 (305)
T PF07433_consen 84 AA 85 (305)
T ss_pred Cc
Confidence 97
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.56 Score=55.45 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=75.1
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC------------CCEEEE
Q 003217 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA------------SGVVWS 208 (838)
Q Consensus 142 ~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d------------g~~LaS 208 (838)
...|++ |+.+.|-|-|..+.+.... -..| .+.|+.+.|.|. .-+||+
T Consensus 25 ~~GLiAygshslV~VVDs~s~q~iqs-------------------ie~h-~s~V~~VrWap~~~p~~llS~~~~~lliAs 84 (1062)
T KOG1912|consen 25 PSGLIAYGSHSLVSVVDSRSLQLIQS-------------------IELH-QSAVTSVRWAPAPSPRDLLSPSSSQLLIAS 84 (1062)
T ss_pred ccceEEEecCceEEEEehhhhhhhhc-------------------cccC-ccceeEEEeccCCCchhccCccccceeEEe
Confidence 345665 7778888888765544321 0122 556666666652 126888
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC---CC--EEEeeCCCcEEEEECCCcceeeecC
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY---GD--LWSGSEGGGIKIWPWEAIEKALSLK 279 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d---G~--L~SgS~DgtIrvWd~~~~~~~~~~~ 279 (838)
+...|.|.+||...+ ..+..++.|..+|..|++-+. .+ |+.=..-.+|-+|+.+++++.++..
T Consensus 85 aD~~GrIil~d~~~~--------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 85 ADISGRIILVDFVLA--------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred ccccCcEEEEEehhh--------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence 888999999999886 345567788999999998763 32 4443445689999999988766554
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=96.39 E-value=1.2 Score=47.17 Aligned_cols=68 Identities=12% Similarity=0.046 Sum_probs=42.1
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccc---cEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---PVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 197 la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~---~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
++.+++|++||. -.|..|.+-....+- . ..+.+.+-+++ .=.-++||||+. |+-+...|+|+++|+.+
T Consensus 3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf----~--si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 3 LALSSDGKLLAI-LQDQCIEIRSAKDDF----S--SIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred eeecCCCcEEEE-EeccEEEEEeccCCc----h--heeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 455667777765 456666665544421 0 01122222221 235789999999 57788889999999964
|
|
| >COG0708 XthA Exonuclease III [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.021 Score=60.29 Aligned_cols=110 Identities=21% Similarity=0.300 Sum_probs=63.6
Q ss_pred EEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCCCC-CE
Q 003217 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGS-TF 633 (838)
Q Consensus 555 ~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~-~y 633 (838)
-+.|||||+-+.-...+.+||... .|| ||||||+-....-+.. ..+. .+ |. .|
T Consensus 2 kI~SwNVNgiRar~~~~~~~l~~~--~pD--VlclQEtK~~~~~fp~-------------------~~~~-~~--GY~~~ 55 (261)
T COG0708 2 KIASWNVNGLRARLKKLLDWLEEE--QPD--VLCLQETKAQDEQFPR-------------------EELE-AL--GYHHV 55 (261)
T ss_pred eeEEEehhhHHHHHHHHHHHHHHh--CCC--EEEEEecccCcccCCH-------------------hHHh-hC--CceEE
Confidence 478999998877666688999963 345 4689998643321110 0111 11 22 23
Q ss_pred EEEeeeecccEEEEEEEecCCcCccCceeeceeecccCccc-CCCceeEEEEEEcCeEEEEEeccccCCcc
Q 003217 634 ERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAI-GNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (838)
Q Consensus 634 ~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~-gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~ 703 (838)
..-+.+.-.|+ ++++|.... .|..|+++.- -..=+=.|...+.+ |.++|.=+++++.
T Consensus 56 ~~~gqKgysGV--ailsr~~~~---------~v~~g~~~~~~~d~e~R~I~a~~~~--~~v~~~Y~PnG~~ 113 (261)
T COG0708 56 FNHGQKGYSGV--AILSKKPPD---------DVRRGFPGEEEDDEEGRVIEAEFDG--FRVINLYFPNGSS 113 (261)
T ss_pred EecCcCCcceE--EEEEccCch---------hhhcCCCCCccccccCcEEEEEECC--EEEEEEEcCCCCC
Confidence 33333444444 567777654 5567776521 11223345555555 8888999988875
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.11 Score=56.94 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=62.1
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~-~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvW 267 (838)
+..|..++|+|..+ +|..++.+.+|++.|+++. -...++.+| ..+++++|+-|.. |+.|-..|.|-|+
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--------~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--------CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccc--------eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 56799999999775 8999999999999999996 345566777 7999999998875 8899999999999
Q ss_pred ECCC
Q 003217 268 PWEA 271 (838)
Q Consensus 268 d~~~ 271 (838)
|+..
T Consensus 264 D~R~ 267 (463)
T KOG1645|consen 264 DMRQ 267 (463)
T ss_pred EccC
Confidence 9965
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.021 Score=65.57 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=58.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.+.|.|++++|+.+.|+.|..||.|++||...+ ..++.-+.=..+.++++|+|. ++.||.-|-+.+||+
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~----------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRG----------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCC----------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 568999999999999999999999999998774 222223344568899999998 578999999999998
Q ss_pred CC
Q 003217 270 EA 271 (838)
Q Consensus 270 ~~ 271 (838)
.-
T Consensus 329 AL 330 (545)
T PF11768_consen 329 AL 330 (545)
T ss_pred ec
Confidence 54
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.19 E-value=2.6 Score=46.11 Aligned_cols=117 Identities=11% Similarity=0.131 Sum_probs=73.7
Q ss_pred CeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCccCCCCCcceeEEecccccc----------EEEEEEecCCC-EEEee-
Q 003217 193 SVMCMVGDEASGVVWSGHRD-GRIMCWKMNARLLDSDDGFGEVLSWQAHRGP----------VLSLCISSYGD-LWSGS- 259 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~D-GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~----------V~slafs~dG~-L~SgS- 259 (838)
+-.-+++|++|+.|+++.+- |.|.+.-+... ...........|.++ +.+..|+|+|+ |++..
T Consensus 90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d-----G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQAD-----GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred CCeEEEECCCCCEEEEEEccCceEEEEEcccC-----CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 34679999999999999866 68999988652 011222233455555 88999999998 56554
Q ss_pred -CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEE
Q 003217 260 -EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFAL 336 (838)
Q Consensus 260 -~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~l 336 (838)
.| .|.+++++.+.. +-. ... . + -+...-+.+++.+++..+.... +.+|.+
T Consensus 165 G~D-ri~~y~~~dg~L--~~~--~~~---------------~-----v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v 217 (346)
T COG2706 165 GTD-RIFLYDLDDGKL--TPA--DPA---------------E-----V--KPGAGPRHIVFHPNGKYAYLVNELNSTVDV 217 (346)
T ss_pred CCc-eEEEEEcccCcc--ccc--ccc---------------c-----c--CCCCCcceEEEcCCCcEEEEEeccCCEEEE
Confidence 34 578888864321 100 000 0 0 0122346677777777666665 468999
Q ss_pred EeccC
Q 003217 337 WDART 341 (838)
Q Consensus 337 WD~~t 341 (838)
|....
T Consensus 218 ~~y~~ 222 (346)
T COG2706 218 LEYNP 222 (346)
T ss_pred EEEcC
Confidence 98876
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=96.11 E-value=2.4 Score=47.76 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=74.0
Q ss_pred CceEEEEEcCCCc-EEEEECCC-eEEEEcCCCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC-Ccccccc
Q 003217 420 RRTEALTTSIDGM-IWTGGANG-LLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (838)
Q Consensus 420 ~~v~ala~S~dg~-l~Sgs~Dg-tIrlWD~~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l 494 (838)
..|.-.-+..++. ++.|..|| .+-++|..|-..+.+...-+.|-++. ++|++++++-....|.+.|++ |+....-
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id 439 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID 439 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec
Confidence 3344444444443 77888888 89999997767777777778888874 579999998777788888887 6665555
Q ss_pred cccccCEEEEEe--CCCEEEEEc----CCCCeeeeecCC
Q 003217 495 VAHSSPVIKMAV--GAGYIFTLA----NHGGIRGWNVTS 527 (838)
Q Consensus 495 ~gH~~~V~sla~--dg~~l~S~S----~DgtIrlWdl~s 527 (838)
+...+-|+.+.+ ++++++-+= .-..|+++|+..
T Consensus 440 kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 440 KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 566677887775 455666332 234577776543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=2.2 Score=48.97 Aligned_cols=99 Identities=10% Similarity=0.027 Sum_probs=51.6
Q ss_pred EEcCCCc-EEEEEC-CC--eEEEEcCC-CCeeeEeecCCccEEEEEEcCCEEEEEeeC---------CeEEEEeCCCccc
Q 003217 426 TTSIDGM-IWTGGA-NG--LLLQWDPN-GNRLQDFQYLPFAVQCLCTFGSQIWVGYMN---------GIVQVLDLEGNLL 491 (838)
Q Consensus 426 a~S~dg~-l~Sgs~-Dg--tIrlWD~~-g~~l~tl~~H~~~V~sls~dG~~LasGs~D---------gtIrlWD~~g~~i 491 (838)
.++|||+ |+-.+. .+ .|.+.|+. |+. +.+.........+++||++|+..+.. ..|.+.|+++...
T Consensus 283 ~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~-~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 283 NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV-EQVVFHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCe-EeCccCCCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 3677775 544332 22 57777884 443 22322111223678899977765543 3678888874433
Q ss_pred cccccc-ccCEEEEEeCCCEEEEEcC-CCCeeeeec
Q 003217 492 GGWVAH-SSPVIKMAVGAGYIFTLAN-HGGIRGWNV 525 (838)
Q Consensus 492 ~~l~gH-~~~V~sla~dg~~l~S~S~-DgtIrlWdl 525 (838)
+.++.. ...--+.++||+.++-.+. .+.-.+|-+
T Consensus 362 ~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~ 397 (419)
T PRK04043 362 RRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGII 397 (419)
T ss_pred EECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence 333322 1122345678887664443 333344443
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.8 Score=49.53 Aligned_cols=104 Identities=12% Similarity=0.118 Sum_probs=62.1
Q ss_pred ceEEEEEcCCCc---EEEEECC-CeEEEEcCC--C---CeeeEeecCCccEEE--EEEcCCEEEEEe---eCCeEEEEeC
Q 003217 421 RTEALTTSIDGM---IWTGGAN-GLLLQWDPN--G---NRLQDFQYLPFAVQC--LCTFGSQIWVGY---MNGIVQVLDL 486 (838)
Q Consensus 421 ~v~ala~S~dg~---l~Sgs~D-gtIrlWD~~--g---~~l~tl~~H~~~V~s--ls~dG~~LasGs---~DgtIrlWD~ 486 (838)
.|.+.++.|.|. +++|-+. .++.++-++ + +.+.+|.. ...+. .++-|++++++. ..|.+..+|+
T Consensus 447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEec
Confidence 455677778775 4555432 478888773 2 23444432 12233 367799888766 4689999998
Q ss_pred C-CcccccccccccCEEEEEe--CCCEEEEEcC------CCCeeeeecC
Q 003217 487 E-GNLLGGWVAHSSPVIKMAV--GAGYIFTLAN------HGGIRGWNVT 526 (838)
Q Consensus 487 ~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~------DgtIrlWdl~ 526 (838)
. ..+..+-..-...-+.+.+ .|+|++++|+ |.+-|+|+++
T Consensus 525 ~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 525 DYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred chhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 7 3443332222223445655 4678887764 6677888865
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.25 Score=45.31 Aligned_cols=90 Identities=19% Similarity=0.178 Sum_probs=61.5
Q ss_pred EcCCCc--EEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE-cCCEEEEEeeCCeEEEEeCCCcccccccccccCEEE
Q 003217 427 TSIDGM--IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIK 503 (838)
Q Consensus 427 ~S~dg~--l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~s 503 (838)
+..||. |+.||.|..||+|+-. +.+.+++. .+.|++|.. .+.+++-|-.+|||-+++-..++-+.-..|. +.+
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRiKSK~~--~~~ 85 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFKGD-EIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRIKSKNQ--VTS 85 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEeCC-cEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeeeccCCC--eEE
Confidence 344543 9999999999999854 56666654 567888866 4568888899999999997544444333333 666
Q ss_pred EE-eC----CC-EEEEEcCCCCe
Q 003217 504 MA-VG----AG-YIFTLANHGGI 520 (838)
Q Consensus 504 la-~d----g~-~l~S~S~DgtI 520 (838)
+. .| |. -|++|=.+|.|
T Consensus 86 ~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 86 MAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred EEEEcCCCCCceEEEEEecCCeE
Confidence 65 22 22 46677666654
|
|
| >PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.06 Score=63.77 Aligned_cols=31 Identities=16% Similarity=0.373 Sum_probs=23.1
Q ss_pred eEEEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 689 RIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 689 ~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
..||++|+||-.+...-.-|..+...|++.+
T Consensus 417 ~~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l 447 (606)
T PLN03144 417 QLLCVANTHIHANQELKDVKLWQVHTLLKGL 447 (606)
T ss_pred cEEEEEEeeeccCCccchhHHHHHHHHHHHH
Confidence 3699999999777665556667777777765
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.016 Score=59.93 Aligned_cols=66 Identities=23% Similarity=0.425 Sum_probs=55.0
Q ss_pred cEEEEEEc---CCEEEEEeeCCeEEEEeCC--CcccccccccccCEEEEEe---CCCEEEEEcCCCCeeeeecC
Q 003217 461 AVQCLCTF---GSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 461 ~V~sls~d---G~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~---dg~~l~S~S~DgtIrlWdl~ 526 (838)
.|.+++.+ ...+++|+.||.|-|||.. ..+...+++|..+++.|-+ +|..|+++|.||.+.-||..
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 37777653 3478889999999999986 3467788999999999986 57789999999999999954
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.99 Score=54.18 Aligned_cols=80 Identities=11% Similarity=0.174 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCcE--EEEECCCeEEEEcCCCCe--eeEeecCCccEEEEEE-cCCE-EEEEeeCCeEEEEeCCC-cccc
Q 003217 420 RRTEALTTSIDGMI--WTGGANGLLLQWDPNGNR--LQDFQYLPFAVQCLCT-FGSQ-IWVGYMNGIVQVLDLEG-NLLG 492 (838)
Q Consensus 420 ~~v~ala~S~dg~l--~Sgs~DgtIrlWD~~g~~--l~tl~~H~~~V~sls~-dG~~-LasGs~DgtIrlWD~~g-~~i~ 492 (838)
..|+.+++-.|++. .+++. ..|.++.++|+- +..+..|...++|.++ +++. +++| .+..|.+||..+ +..-
T Consensus 172 ~pITgL~~~~d~~s~lFv~Tt-~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~~e~l~fY~sd~~~~cf 249 (933)
T KOG2114|consen 172 EPITGLALRSDGKSVLFVATT-EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA-GSEFLYFYDSDGRGPCF 249 (933)
T ss_pred CCceeeEEecCCceeEEEEec-ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe-cCceEEEEcCCCcceee
Confidence 34566777667663 44444 459999997755 5667778888998876 4554 4443 466899999875 3444
Q ss_pred ccc-ccccCE
Q 003217 493 GWV-AHSSPV 501 (838)
Q Consensus 493 ~l~-gH~~~V 501 (838)
.+. ||....
T Consensus 250 af~~g~kk~~ 259 (933)
T KOG2114|consen 250 AFEVGEKKEM 259 (933)
T ss_pred eecCCCeEEE
Confidence 554 665443
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.036 Score=38.07 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=22.6
Q ss_pred CeeeEeecCCccEEEEEEc--CCEEEEEeeCCeEEEEe
Q 003217 450 NRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 450 ~~l~tl~~H~~~V~sls~d--G~~LasGs~DgtIrlWD 485 (838)
+++..+..|...|+++... +.++++|+.|+.|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4455566666666666543 45666666777777765
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.033 Score=57.00 Aligned_cols=97 Identities=14% Similarity=0.192 Sum_probs=67.9
Q ss_pred CcEEEEECCCeEEEEcCC--CCeeeEeecCCccEEEEEE---cCCEEEEEeeCCeEEEEeCC-Ccccccccccc-cCEEE
Q 003217 431 GMIWTGGANGLLLQWDPN--GNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS-SPVIK 503 (838)
Q Consensus 431 g~l~Sgs~DgtIrlWD~~--g~~l~tl~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~-~~V~s 503 (838)
..++.|+.+|.|.+|..+ |.....+..-.+.|-+..+ ++.+.++|..||.||.|+.. ++.+..-..|+ .++..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 458889999999999885 4433333333455666555 35589999999999999987 66666666777 45544
Q ss_pred EE--eCCCEEEEE--cCCCCeeeeecCC
Q 003217 504 MA--VGAGYIFTL--ANHGGIRGWNVTS 527 (838)
Q Consensus 504 la--~dg~~l~S~--S~DgtIrlWdl~s 527 (838)
+. ..+..+.++ |.|..++.|++..
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchhh
Confidence 33 245566666 8888888888754
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.28 E-value=1 Score=47.26 Aligned_cols=73 Identities=8% Similarity=-0.058 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 194 V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
+.++++|+|++++++-+.-..|-.+.++... ...+......-++.=.+..|+.... +++++.||++.|||+..
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s-----ey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDES-----EYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCcc-----ceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecc
Confidence 7889999999999999988888889887642 1111112223344556778888765 68999999999999965
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.06 Score=64.30 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=76.8
Q ss_pred EEEEECCCeEEEEcCC-CCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEeCCCE
Q 003217 433 IWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAGY 510 (838)
Q Consensus 433 l~Sgs~DgtIrlWD~~-g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~~ 510 (838)
++-|+-...+...|.. ++..++.......|.-+...++.+.+|...|+|-|-|++ -+.++++.+|++.|..+...|+.
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNl 229 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNL 229 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCe
Confidence 4444444557778884 455555555555577778899999999999999999998 57899999999999999999999
Q ss_pred EEEEcC---------CCCeeeeecCCC
Q 003217 511 IFTLAN---------HGGIRGWNVTSP 528 (838)
Q Consensus 511 l~S~S~---------DgtIrlWdl~s~ 528 (838)
|+|+|. |.-|++||++..
T Consensus 230 LitCG~S~R~~~l~~D~FvkVYDLRmm 256 (1118)
T KOG1275|consen 230 LITCGYSMRRYNLAMDPFVKVYDLRMM 256 (1118)
T ss_pred EEEeecccccccccccchhhhhhhhhh
Confidence 999874 667999998753
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.4 Score=51.82 Aligned_cols=108 Identities=18% Similarity=0.266 Sum_probs=67.1
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCc--eeeecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPF--KESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL 224 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~g-~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~ 224 (838)
|.||-++|--+.+...-.. .+|-.....+ -+.+.| ..+|.-+.|..+.+.|-|...+|.|.||=+-.|.
T Consensus 33 G~dGlLKVlKl~t~t~d~~--------~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgs 104 (1189)
T KOG2041|consen 33 GADGLLKVLKLGTDTTDLN--------KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGS 104 (1189)
T ss_pred cccceeEEEEccccCCccc--------ccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeeccc
Confidence 7899999998865433221 1121111111 111222 7899999999999999999999999999887652
Q ss_pred cCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 225 LDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 225 ~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
+.+...-...+..|.+|++..||+ +...-+||.|-|=.+
T Consensus 105 ------W~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 105 ------WCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred ------HHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 011111112346788999998886 555566665554444
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.00 E-value=8 Score=45.88 Aligned_cols=115 Identities=20% Similarity=0.231 Sum_probs=76.4
Q ss_pred eEEEEecCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 003217 135 LRTIVCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (838)
Q Consensus 135 ~~~l~~~~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DG 213 (838)
++++..+.+.+..|+ -|.|.+++-....... .+ ..+. .+.+..+.++++..++|.|+..|
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~----------------~~--~~~~-~~~~~~~~vs~~e~lvAagt~~g 98 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK----------------LK--NEGA-TGITCVRSVSSVEYLVAAGTASG 98 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhc----------------cc--ccCc-cceEEEEEecchhHhhhhhcCCc
Confidence 444545566666665 4688888864332211 11 1111 45566667788889999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEe-ccccccEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 214 RIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
.|-++-+..+.+ .+......+ +.|...|++++|++||. +++|..-|+|-+-.+++
T Consensus 99 ~V~v~ql~~~~p---~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 99 RVSVFQLNKELP---RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eEEeehhhccCC---CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 998887776421 111111222 34889999999999997 89999999998887765
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.19 Score=59.63 Aligned_cols=95 Identities=12% Similarity=0.242 Sum_probs=70.5
Q ss_pred CCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc-------CCEEEEEeeCCeEEEEeCC--Ccccc-ccccc
Q 003217 430 DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF-------GSQIWVGYMNGIVQVLDLE--GNLLG-GWVAH 497 (838)
Q Consensus 430 dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d-------G~~LasGs~DgtIrlWD~~--g~~i~-~l~gH 497 (838)
+|. ++|||.||+|.+-.+ +++...++.- ..++.+|+.+ .+++++|+.-| +.|..-. |+... .+..-
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~ 159 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG 159 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence 454 999999999999988 6655444433 3477777653 35899999888 8888755 43322 35555
Q ss_pred ccCEEEEEeCCCEEEEEcCCCCeeeeecCC
Q 003217 498 SSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 498 ~~~V~sla~dg~~l~S~S~DgtIrlWdl~s 527 (838)
.++|.++.+.|++++|++.+| ||++|+..
T Consensus 160 eG~I~~i~W~g~lIAWand~G-v~vyd~~~ 188 (846)
T KOG2066|consen 160 EGPIHSIKWRGNLIAWANDDG-VKVYDTPT 188 (846)
T ss_pred ccceEEEEecCcEEEEecCCC-cEEEeccc
Confidence 689999999999999998776 89999654
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.26 Score=58.09 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=39.4
Q ss_pred EEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEee
Q 003217 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS 259 (838)
Q Consensus 205 ~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS 259 (838)
++|.|...|+|-+.|+.++ ..-..|..|+..|.++-+.....|+|.+
T Consensus 439 LvAvGT~sGTV~vvdvst~--------~v~~~fsvht~~VkgleW~g~sslvSfs 485 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTN--------AVAASFSVHTSLVKGLEWLGNSSLVSFS 485 (1062)
T ss_pred eEEeecCCceEEEEEecch--------hhhhhhcccccceeeeeeccceeEEEee
Confidence 6899999999999999987 3445678899999999998877776654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=94.75 E-value=8.9 Score=48.58 Aligned_cols=68 Identities=13% Similarity=0.036 Sum_probs=48.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEE----ECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCW----KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvW----d~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIr 265 (838)
...|.++.+-++...|..+..+|-|.+. +..+. ..+....+ ...|.+++||||++ |+-...+++|-
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~------~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~ 145 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDED------EIEIVGSV---DSGILAASWSPDEELLALVTGEGNLL 145 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc------eeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEE
Confidence 4578999998999999999999999888 44442 11222222 56899999999998 45555566665
Q ss_pred EE
Q 003217 266 IW 267 (838)
Q Consensus 266 vW 267 (838)
+=
T Consensus 146 ~m 147 (928)
T PF04762_consen 146 LM 147 (928)
T ss_pred EE
Confidence 54
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=94.67 E-value=4.3 Score=44.12 Aligned_cols=55 Identities=13% Similarity=0.150 Sum_probs=40.3
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEe
Q 003217 197 MVGDEASGVVWSGHR-----DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSG 258 (838)
Q Consensus 197 la~s~dg~~LaSGs~-----DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~Sg 258 (838)
-+||+||++|++-=. .|.|-|||...+ ++.+..|..|-=.=..|.+.|||+ |+.+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~-------~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARG-------YRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCC-------cEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 478999999999644 478999999854 256677776643335678999995 6554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.64 Score=55.31 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=70.0
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC------CCEEEeeCCCcEEEEECCC--
Q 003217 200 DEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY------GDLWSGSEGGGIKIWPWEA-- 271 (838)
Q Consensus 200 s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d------G~L~SgS~DgtIrvWd~~~-- 271 (838)
+.+|.+++|+|.||+|.+-.+.++ ++..++. -..++.+|+++|| +++++|+.-| +-+....=
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~--------~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg 149 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTD--------DEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG 149 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCC--------ccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence 568999999999999999988876 3333322 1469999999998 3488998877 55554211
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEec
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~ 350 (838)
......++. -.+.+.++.- -|..|+=++|.+|+++|..+++.+..+..
T Consensus 150 nk~~v~l~~-----------------------------~eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 150 NKDSVVLSE-----------------------------GEGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred Cccceeeec-----------------------------CccceEEEEe--cCcEEEEecCCCcEEEeccccceeeccCC
Confidence 111110100 0122333322 24455556678999999999888765543
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.23 E-value=9.4 Score=45.30 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=70.5
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCE-EEeeCCCcEEEEECCCcceee
Q 003217 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAIEKAL 276 (838)
Q Consensus 198 a~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~~~~~~~~ 276 (838)
++|..+++|+-|+.-|.+-+++-.++. ...+...|-.+.+..+.++++..+ +.|+..|.|.|..+....
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~-------~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~--- 109 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGE-------MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL--- 109 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchh-------hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC---
Confidence 345567999999999999999988763 333444444566777788888875 578888888887764311
Q ss_pred ecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccC
Q 003217 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDART 341 (838)
Q Consensus 277 ~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~t 341 (838)
.+...... +.+. .+...|+++.-+.++-+|++|.+ ++|.+-.+.+
T Consensus 110 --p~~~~~~t-------------~~d~-----~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 --PRDLDYVT-------------PCDK-----SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred --CCcceeec-------------cccc-----cCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11111000 0000 01335777777777788888775 3444444443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.33 Score=54.08 Aligned_cols=75 Identities=24% Similarity=0.319 Sum_probs=56.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCE-EEeeC-CCcEEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSE-GGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~-DgtIrvWd 268 (838)
...|+-+... -.+.+.+++.||.+|.|.-..- ...+-+..+.+|-+.|.+++.+-||.| .|.+. |..+|++|
T Consensus 9 rd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i-----sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 9 RDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI-----SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred cceeeeEeee-hhheEEeeecchhhhhcCCCCc-----cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence 4455555554 4589999999999999975441 011344567899999999999999985 68777 99999999
Q ss_pred CCC
Q 003217 269 WEA 271 (838)
Q Consensus 269 ~~~ 271 (838)
++.
T Consensus 83 vEn 85 (558)
T KOG0882|consen 83 VEN 85 (558)
T ss_pred eec
Confidence 854
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.18 E-value=6.8 Score=43.02 Aligned_cols=57 Identities=14% Similarity=0.348 Sum_probs=41.6
Q ss_pred ceEEEEEcCCCcEEEEECC-C-eEEEEcCCCCeeeEeecCCccEEEEEEcC---CEEEEEee
Q 003217 421 RTEALTTSIDGMIWTGGAN-G-LLLQWDPNGNRLQDFQYLPFAVQCLCTFG---SQIWVGYM 477 (838)
Q Consensus 421 ~v~ala~S~dg~l~Sgs~D-g-tIrlWD~~g~~l~tl~~H~~~V~sls~dG---~~LasGs~ 477 (838)
....++.+.+|.+|++... | .|.+|+.+|+.++.+......+.++++-| +.|++.+.
T Consensus 214 ~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 214 LPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 3445677788999954444 3 79999999999999888767778887754 66666553
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.67 Score=49.35 Aligned_cols=108 Identities=10% Similarity=0.134 Sum_probs=62.2
Q ss_pred CCCceEEEEEcCCCcEEEEECCCeEEEEcCC--CCe--eeEeecCCc-----cEEEEEEcC---C-EEEEEeeCCeEEEE
Q 003217 418 DNRRTEALTTSIDGMIWTGGANGLLLQWDPN--GNR--LQDFQYLPF-----AVQCLCTFG---S-QIWVGYMNGIVQVL 484 (838)
Q Consensus 418 ~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~~--g~~--l~tl~~H~~-----~V~sls~dG---~-~LasGs~DgtIrlW 484 (838)
|..-+.++.+..|...+..+.|=.|.+|+++ ..+ +-.++.|.- -|++-.+.. . +.++ ++.|+|+|-
T Consensus 171 H~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS-sSkG~Ikl~ 249 (460)
T COG5170 171 HPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS-SSKGEIKLN 249 (460)
T ss_pred ceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe-cCCCcEEeh
Confidence 5556778888888775444557779999983 222 333444432 244433322 2 4444 678999999
Q ss_pred eCCCc--cc---cccc---------ccccCEEEE---Ee--CCCEEEEEcCCCCeeeeecCC
Q 003217 485 DLEGN--LL---GGWV---------AHSSPVIKM---AV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 485 D~~g~--~i---~~l~---------gH~~~V~sl---a~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
|+... |. ..+. .-++.|.+| .+ .|++++|-+. -||++||+..
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm 310 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNM 310 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccc
Confidence 97621 11 1111 122334444 33 5678887655 4899999764
|
|
| >KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription] | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.15 Score=57.68 Aligned_cols=74 Identities=14% Similarity=0.106 Sum_probs=48.6
Q ss_pred EEEEEecCCcCccC--ceeeceeecccCcccCCCceeEEEEEEcCe---EEEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 646 IAVWVRKNLKDYVG--DVDVAAVPCGFGRAIGNKGAVGLRVRVYDR---IMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 646 l~vf~r~~~~~~i~--~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~---~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
++++-+.+.-..+- .|...-...++.+.-.=++.|.++|++-+. .++..|.||--|......|-++...|+..+
T Consensus 204 ~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~vrL~Q~~iiL~~~ 282 (495)
T KOG2338|consen 204 VAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSDVRLAQVYIILAEL 282 (495)
T ss_pred EEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccchhhHHHHHHHHHH
Confidence 44555555322222 223233334444322226677788877765 899999999999888888899999998876
|
|
| >PRK15251 cytolethal distending toxin subunit CdtB; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.97 Score=48.26 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=27.1
Q ss_pred CCCceeEEEEEEcCeEEEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 675 GNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 675 gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
..+..+++++. .+.|.+.||.+..+ ..|.+..+.|...+
T Consensus 140 ~~Rpilgi~i~----~~~ffstH~~a~~~--~da~aiV~~I~~~f 178 (271)
T PRK15251 140 ASRPIIGIRIG----NDVFFSIHALANGG--TDAGAIVRAVHNFF 178 (271)
T ss_pred cccceEEEEec----CeEEEEeeecCCCC--ccHHHHHHHHHHHH
Confidence 36778888763 37999999999732 23666776766653
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.31 E-value=5 Score=45.74 Aligned_cols=50 Identities=6% Similarity=0.021 Sum_probs=36.2
Q ss_pred CCeEEEEeCCCcccccccccccCEEEEEe--CCCE--EEEEcCCCCeeeeecCC
Q 003217 478 NGIVQVLDLEGNLLGGWVAHSSPVIKMAV--GAGY--IFTLANHGGIRGWNVTS 527 (838)
Q Consensus 478 DgtIrlWD~~g~~i~~l~gH~~~V~sla~--dg~~--l~S~S~DgtIrlWdl~s 527 (838)
...++|.+++++-+.....-.++|....+ +++. +++|-.+.++.+.|++.
T Consensus 254 esnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 254 ESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred cceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeeccccc
Confidence 35788999886656665566889999886 4554 55667888888888653
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.26 E-value=15 Score=42.42 Aligned_cols=61 Identities=20% Similarity=0.102 Sum_probs=37.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEE
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIW 267 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvW 267 (838)
....+..+|+|+.++. ..||...++..... +... .+.-.+.+|.+.++.+.-...++|++.
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~--------r~k~-----~G~g~~~vw~~~n~yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAW--------RNKA-----FGSGLSFVWSSRNRYAVLESSSTIKIY 94 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTT--------EEEE-----EEE-SEEEE-TSSEEEEE-TTS-EEEE
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCC--------cccc-----cCceeEEEEecCccEEEEECCCeEEEE
Confidence 4678999999999988 66677777764332 2222 234456778888888777778889996
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.28 Score=53.93 Aligned_cols=88 Identities=20% Similarity=0.194 Sum_probs=67.2
Q ss_pred cCCCceEEEEEcCCC--cEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc---CCEEEEEeeCCeEEEEeCC--C
Q 003217 417 DDNRRTEALTTSIDG--MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE--G 488 (838)
Q Consensus 417 ~~~~~v~ala~S~dg--~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~--g 488 (838)
.+..-|..++|||.. .+..++.+++|+|.|+ +..+..++..| ..++++++| -.+|+.|...|.|.++|+. .
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 345567778898864 4788999999999999 55677888887 788988875 3499999999999999986 2
Q ss_pred cccccccc--cccCEEEEE
Q 003217 489 NLLGGWVA--HSSPVIKMA 505 (838)
Q Consensus 489 ~~i~~l~g--H~~~V~sla 505 (838)
..+..+.+ -..+|..|+
T Consensus 270 ~~~~e~~a~~t~~pv~~i~ 288 (463)
T KOG1645|consen 270 GPLMELVANVTINPVHKIA 288 (463)
T ss_pred chHhhhhhhhccCcceeec
Confidence 34555544 345677665
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.068 Score=63.43 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=60.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCC-cEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGG-GIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~Dg-tIrvW 267 (838)
+..-+|++|+.+.+.|+.|+..|.|+++++.+| ....+..+|..+|+-|--+.||. |-|.++.. ..-+|
T Consensus 1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--------~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--------SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred ccceeeEEeecCCceEEeeeccceEEEEEccCc--------cccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 567899999999999999999999999999998 44556789999999999999997 44444444 67789
Q ss_pred ECCC
Q 003217 268 PWEA 271 (838)
Q Consensus 268 d~~~ 271 (838)
++..
T Consensus 1173 ~~~s 1176 (1516)
T KOG1832|consen 1173 DASS 1176 (1516)
T ss_pred cccc
Confidence 9854
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.37 Score=55.65 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=46.6
Q ss_pred CCceEEEEEcCCCc-EEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 419 ~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
...|.+.+.+|+.. ++.|+.||+|.+||.+.+..+ +..+.-..+.++. +|..+++|+..|.|++||..
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 34566777888765 888999999999998433222 2222223344554 77889999888999999976
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.47 Score=48.81 Aligned_cols=105 Identities=17% Similarity=0.172 Sum_probs=65.2
Q ss_pred ecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEc-CCCCEEEEEeCCCcEEE
Q 003217 140 CTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGD-EASGVVWSGHRDGRIMC 217 (838)
Q Consensus 140 ~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s-~dg~~LaSGs~DGtIrv 217 (838)
.....++. ++|+.|.+|+.... -. . .+..++ +..+|.|+.-. .++.+.++|..||.||.
T Consensus 68 ~~~~~~~vG~~dg~v~~~n~n~~-g~-~------------~d~~~s-----~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~ 128 (238)
T KOG2444|consen 68 TASAKLMVGTSDGAVYVFNWNLE-GA-H------------SDRVCS-----GEESIDLGIPNGRDSSLGCVGAQDGRIRA 128 (238)
T ss_pred ccCceEEeecccceEEEecCCcc-ch-H------------HHhhhc-----ccccceeccccccccceeEEeccCCceee
Confidence 34556666 46899999887421 00 0 111121 13455555443 34568999999999999
Q ss_pred EECCCCccCCCCCcceeEEecccc-ccEEEEEEecCCC-EEEe--eCCCcEEEEECCC
Q 003217 218 WKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LWSG--SEGGGIKIWPWEA 271 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~-L~Sg--S~DgtIrvWd~~~ 271 (838)
|++.-. +....--.|+ .++.....+..++ |.++ |.|.++|.|+++.
T Consensus 129 ~n~~p~--------k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 129 CNIKPN--------KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eccccC--------ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 998765 3333333465 5666666655555 6666 8899999999854
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.08 E-value=18 Score=38.18 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=65.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc-cccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCC
Q 003217 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 203 g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH-~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
..+++.||.-+.++.-|..+|. . .|+.- ...|-+-+.- -|+ ++-|...|.+-+-+..++++...+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~--------~--~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGN--------L--IWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred ceEEEEecCCceEEEecCCCCc--------E--EeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee
Confidence 3678888888888888888772 1 22211 1222222222 244 67888888888888877655444322
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCeEEEE-EcCCCCEEEEeC-CCcEEEEeccCccEEEEEec
Q 003217 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL-SDHSRAKVWSAG-FLSFALWDARTRELLKVFNI 350 (838)
Q Consensus 281 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~la-s~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~ 350 (838)
.+ .+++-+ .+.+++.+|+++ |++....|.++..++-..+-
T Consensus 92 ~~------------------------------~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 92 LE------------------------------TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred hh------------------------------hhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 11 111111 345778899988 57888999988887655443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.03 E-value=3.4 Score=49.82 Aligned_cols=127 Identities=16% Similarity=0.209 Sum_probs=76.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCE-EEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~ 269 (838)
..|+.+++++.+-+.||.|-.||+|....-+-- . ++..+...... -+.+||+++|-.||+. +-...-..|.++.+
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~-R--Drgsr~~~~~~-~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l 200 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL-R--DRGSRQDYSHR-GKEPITGLALRSDGKSVLFVATTEQVMLYSL 200 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcch-h--ccccceeeecc-CCCCceeeEEecCCceeEEEEecceeEEEEe
Confidence 668999999999999999999999987753210 0 00011111111 2579999999999972 33334456888887
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEe
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~ 349 (838)
.+....+.. +.++ -....|..+++....+.+++...+.+||.......-+|.
T Consensus 201 ~gr~p~~~~------------------ld~~----------G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 201 SGRTPSLKV------------------LDNN----------GISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cCCCcceee------------------eccC----------CccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence 642211110 1111 113445555555555666666778888877655545554
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.86 E-value=16 Score=40.03 Aligned_cols=95 Identities=21% Similarity=0.339 Sum_probs=57.3
Q ss_pred CCceEEEEEcCCCc-EEEEEC-CCeEEEEcCC---CC---e--eeEeecCCccEEEEEEcCC-EEEEEee-CC-eEEEEe
Q 003217 419 NRRTEALTTSIDGM-IWTGGA-NGLLLQWDPN---GN---R--LQDFQYLPFAVQCLCTFGS-QIWVGYM-NG-IVQVLD 485 (838)
Q Consensus 419 ~~~v~ala~S~dg~-l~Sgs~-DgtIrlWD~~---g~---~--l~tl~~H~~~V~sls~dG~-~LasGs~-Dg-tIrlWD 485 (838)
....+.|+||||++ ++.+-+ .+.|..++.. +. . ...+..+.+.--.++.|.+ .||++.. +| .|.+|+
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence 44456799999996 655543 3566666543 21 1 1111112222223444433 5664444 33 999999
Q ss_pred CCCcccccccccccCEEEEEeCC---CEEEE
Q 003217 486 LEGNLLGGWVAHSSPVIKMAVGA---GYIFT 513 (838)
Q Consensus 486 ~~g~~i~~l~gH~~~V~sla~dg---~~l~S 513 (838)
..|+++.....+...+.++++.| +.|+-
T Consensus 242 pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 242 PDGKLLGEIKLPVKRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred CCCcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence 99999998888878888888754 55543
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=91.60 E-value=1.1 Score=41.28 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=43.4
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEEC
Q 003217 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (838)
Q Consensus 204 ~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (838)
.-|+.||.|..||+|+-+. .+..+. -+..|++|+-...++++-|-..|||.|++-
T Consensus 16 ~eLlvGs~D~~IRvf~~~e----------~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDE----------IVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred ceEEEecCCcEEEEEeCCc----------EEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 5789999999999998654 233322 256889998888888999999999999875
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.56 E-value=38 Score=42.87 Aligned_cols=66 Identities=8% Similarity=-0.077 Sum_probs=48.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc-cccEEEEEEecCCC-EEEeeCCCcEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGD-LWSGSEGGGIKI 266 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH-~~~V~slafs~dG~-L~SgS~DgtIrv 266 (838)
...|.++.|-.+..-|..+..+|.|.+-|.++.. ....|- .+.|.++++|||++ ++-.+.++++-+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~----------~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~ 135 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE----------LEIVGNVDNGISAASWSPDEELLALITGRQTLLF 135 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccc----------eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEE
Confidence 4468888888888889999999999988887742 222232 57899999999998 444444555543
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.44 Score=58.36 Aligned_cols=69 Identities=20% Similarity=0.427 Sum_probs=51.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEe---cCCC-EEEeeCCCcEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCIS---SYGD-LWSGSEGGGIKI 266 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs---~dG~-L~SgS~DgtIrv 266 (838)
.++|.|++|+.+|+++..|..+|.|.+||+..+ +....+.-|..+++++-+. .++. ++++...|. +
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~--------k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f 199 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA--------KILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--F 199 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCC--------cceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--e
Confidence 679999999999999999999999999999986 4455555555555555443 3333 677766665 7
Q ss_pred EEC
Q 003217 267 WPW 269 (838)
Q Consensus 267 Wd~ 269 (838)
|.+
T Consensus 200 ~~l 202 (1206)
T KOG2079|consen 200 WKL 202 (1206)
T ss_pred EEE
Confidence 875
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=91.20 E-value=36 Score=39.92 Aligned_cols=69 Identities=7% Similarity=0.078 Sum_probs=44.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccc------cE--EEEEEecCCCEEEeeCCCcEEEEECCCcce
Q 003217 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG------PV--LSLCISSYGDLWSGSEGGGIKIWPWEAIEK 274 (838)
Q Consensus 203 g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~------~V--~slafs~dG~L~SgS~DgtIrvWd~~~~~~ 274 (838)
++.|+.++.|+.+...|..+| +.+-+..-... .+ ..+++..+++++.++.|+.|.-.|.++++.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG--------~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~ 132 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATG--------KVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQ 132 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCC--------hhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCE
Confidence 467788888999999999887 33322211111 11 112222226688888999999999998877
Q ss_pred eeecC
Q 003217 275 ALSLK 279 (838)
Q Consensus 275 ~~~~~ 279 (838)
.....
T Consensus 133 ~W~~~ 137 (488)
T cd00216 133 VWKFG 137 (488)
T ss_pred eeeec
Confidence 66553
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=90.96 E-value=5.4 Score=48.99 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=50.7
Q ss_pred ceEEEEEcCCCcEEEEECCCeEEEEcCCCCeeeE-eecCCccEEEEE--EcCCEEEEEeeCCeEEEEeC
Q 003217 421 RTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQD-FQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDL 486 (838)
Q Consensus 421 ~v~ala~S~dg~l~Sgs~DgtIrlWD~~g~~l~t-l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~ 486 (838)
.-.+++.+.+|.|+.||.+|.|||+|-.|..-+| |.+-..+|..|. .||++|++.+ +..|-|.|+
T Consensus 579 ~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 4567889999999999999999999986654444 445578999774 5899887754 668888885
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=90.37 E-value=3.1 Score=54.90 Aligned_cols=69 Identities=13% Similarity=0.077 Sum_probs=41.3
Q ss_pred EEEEEEEecCCcCccCceeeceeec-ccCcccCCCceeEEEEEEc----C-eEEEEEeccccCCcchHHHHHHHHHHHHH
Q 003217 644 LLIAVWVRKNLKDYVGDVDVAAVPC-GFGRAIGNKGAVGLRVRVY----D-RIMCFVNCHFAAHLEAVNRRNADFDHVYR 717 (838)
Q Consensus 644 ~~l~vf~r~~~~~~i~~v~~~~v~~-G~~~~~gnKG~v~i~~~i~----~-~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~ 717 (838)
=.++|..|-.+.. .+.-..+. +.+-...+||.+-+.+.+. + ..+.|+|.||.+.... ..|.++.+++.+
T Consensus 103 ~G~AILSR~PI~~----~~~~~l~~~~~~~~~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~-~~R~~Q~~ql~~ 177 (1452)
T PTZ00297 103 NGLIIASRFPIWQ----RGSYTFRNHERGEQSVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSL-PSTSSQVQETRR 177 (1452)
T ss_pred CEEEEEECCChhh----ceeeecCcccccccccccceEEEEEEccccCCCCceEEEEEeCCCCCCCc-chHHHHHHHHHH
Confidence 3456777776642 22222222 1222235899999999984 2 5899999999987543 224444555543
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.92 Score=52.72 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=59.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEE-EEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVL-SLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~-slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..|.-+.++|.-.+||.+..+|.+-+..++- +.+.++.-|...|+ +++|.|||+ |+.|=.||+|++-|+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---------qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv 91 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW---------QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDV 91 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc---------ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence 3577889999999999999999887777663 45555555666666 999999999 678999999999999
Q ss_pred CCcc
Q 003217 270 EAIE 273 (838)
Q Consensus 270 ~~~~ 273 (838)
+++.
T Consensus 92 e~~~ 95 (665)
T KOG4640|consen 92 EKGG 95 (665)
T ss_pred cCCC
Confidence 7754
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=89.98 E-value=35 Score=37.77 Aligned_cols=106 Identities=11% Similarity=0.230 Sum_probs=53.7
Q ss_pred CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEE----------eeCCCcEEEEECCCccee--eecC
Q 003217 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS----------GSEGGGIKIWPWEAIEKA--LSLK 279 (838)
Q Consensus 213 GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S----------gS~DgtIrvWd~~~~~~~--~~~~ 279 (838)
+++.+.|.+++ +..-... .+-.-.+++||||+ +++ |-..-.|.+||..+.... +.+.
T Consensus 17 ~rv~viD~d~~--------k~lGmi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP 86 (342)
T PF06433_consen 17 SRVYVIDADSG--------KLLGMID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIP 86 (342)
T ss_dssp EEEEEEETTTT--------EEEEEEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEET
T ss_pred ceEEEEECCCC--------cEEEEee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecC
Confidence 36777777665 2222221 12233467899997 543 334567899999875432 2222
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC---CCcEEEEeccCccEEEEEecCC
Q 003217 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDARTRELLKVFNIDG 352 (838)
Q Consensus 280 ~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s---~~tI~lWD~~tg~~l~~l~~~~ 352 (838)
...+... + .....++.+.++..+.... -..|.|-|+..+++++.+...+
T Consensus 87 ~k~R~~~-~-----------------------~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG 138 (342)
T PF06433_consen 87 PKPRAQV-V-----------------------PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG 138 (342)
T ss_dssp TS-B--B-S-------------------------GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS
T ss_pred Ccchhee-c-----------------------ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC
Confidence 2111110 0 0111123334455443332 2478899999999888766544
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.66 Score=56.87 Aligned_cols=91 Identities=24% Similarity=0.318 Sum_probs=59.9
Q ss_pred EEEEECCCeEEEEcCCCCeee--EeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe-
Q 003217 433 IWTGGANGLLLQWDPNGNRLQ--DFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV- 506 (838)
Q Consensus 433 l~Sgs~DgtIrlWD~~g~~l~--tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~- 506 (838)
++.|++-|.|-..|.+|+.-. .=..-.++|+++++ +|+++..|-.+|.|.+||.. ++.++.+.-|..++.++..
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v 181 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFV 181 (1206)
T ss_pred EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEE
Confidence 566776677777777665221 11112457888876 68888888888999999986 5777777777777666542
Q ss_pred ----CCCEEEEEcCCCCeeeeec
Q 003217 507 ----GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 507 ----dg~~l~S~S~DgtIrlWdl 525 (838)
++..++++.+-|. +|.+
T Consensus 182 ~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 182 GRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEeCCCcEEEEccCCCc--eEEE
Confidence 3344666655554 6764
|
|
| >KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.47 E-value=0.76 Score=50.11 Aligned_cols=106 Identities=21% Similarity=0.216 Sum_probs=68.2
Q ss_pred EeeeecccEEEEEEEecCCcCccCceee-----ceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcc-----hH
Q 003217 636 VGSRQLAGLLIAVWVRKNLKDYVGDVDV-----AAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE-----AV 705 (838)
Q Consensus 636 v~s~~l~g~~l~vf~r~~~~~~i~~v~~-----~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~-----~~ 705 (838)
..|--| |-.|+||.|..+..-..+.-. ..+-- |-.+|-||---.++.+.+..+.+.|.||-|--. =+
T Consensus 73 FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~r--GDWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D~YL 149 (422)
T KOG3873|consen 73 FHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHR--GDWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQNDEYL 149 (422)
T ss_pred hhcccc-cCceEEeecCchhhhhhhccccCCccceeee--ccccccceeEEEEEeeCCEEeeeeehhccccccccCchhh
Confidence 344444 888999999887533222211 11111 234678998888999999999999999977522 24
Q ss_pred HHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcCcccEEEEeccceeeecCCCh
Q 003217 706 NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITY 780 (838)
Q Consensus 706 ~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~ 780 (838)
--|..+-.++.+-++-- -...|.|+..||||-+=..+++
T Consensus 150 ~HR~~QAwdlaqfi~~t------------------------------------~q~~~vVI~~GDLN~~P~dl~~ 188 (422)
T KOG3873|consen 150 CHRVAQAWDLAQFIRAT------------------------------------RQNADVVILAGDLNMQPQDLGH 188 (422)
T ss_pred hHHHHHHHHHHHHHHHH------------------------------------hcCCcEEEEecCCCCCccccce
Confidence 44665555554433110 1247999999999998766554
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.33 E-value=3.7 Score=43.22 Aligned_cols=78 Identities=13% Similarity=-0.054 Sum_probs=53.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEee-CCCcEEEEEC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGS-EGGGIKIWPW 269 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS-~DgtIrvWd~ 269 (838)
.=.|..|+......|+++.||++-+||+..-. -.......+-..|.++|..+.|++.|. |+-=| .=+.+.|-|+
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~---tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~ 281 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA---TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT 281 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEecccc---cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence 45788999999999999999999999986531 011111122235899999999999885 33222 2356777887
Q ss_pred CCcc
Q 003217 270 EAIE 273 (838)
Q Consensus 270 ~~~~ 273 (838)
.+..
T Consensus 282 R~~~ 285 (344)
T KOG4532|consen 282 RNYV 285 (344)
T ss_pred ccCc
Confidence 6643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.16 E-value=2.5 Score=50.61 Aligned_cols=68 Identities=21% Similarity=0.288 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-ccccccEEEEEEecCCC-EEEeeCCCcEEEEECC
Q 003217 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (838)
Q Consensus 194 V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (838)
+.+++|.|.--.|++|-.-|.+.+|...+. +..+. .-|..+|..+.||++|. |+|+..=|.|.+|..+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~---------e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---------ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCc---------eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 456999998889999999999999998773 44443 56999999999999998 8899999999999986
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.15 E-value=0.53 Score=56.32 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=81.4
Q ss_pred cccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEE-EeeCC-eEEEEeCC-
Q 003217 415 FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWV-GYMNG-IVQVLDLE- 487 (838)
Q Consensus 415 ~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~Las-Gs~Dg-tIrlWD~~- 487 (838)
|.++...-++++|+.+.. |+.|+-.|.|+++++ +|.......+|..+|+-+-+ ||..+.+ .+... -..||++.
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence 445666677899998776 899999999999999 89888889999999999954 7885444 33343 67899986
Q ss_pred -CcccccccccccCEEEEEeCCC---EEEEEcCCCCeeeeecCCCCCCchhhh
Q 003217 488 -GNLLGGWVAHSSPVIKMAVGAG---YIFTLANHGGIRGWNVTSPGPLDSILC 536 (838)
Q Consensus 488 -g~~i~~l~gH~~~V~sla~dg~---~l~S~S~DgtIrlWdl~s~~~~d~~~~ 536 (838)
+...+++.+-. ++.+... .++..-. ..+-++|+++..+++.++.
T Consensus 1177 ~~~~~Hsf~ed~----~vkFsn~~q~r~~gt~~-d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1177 TGGPRHSFDEDK----AVKFSNSLQFRALGTEA-DDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred ccCccccccccc----eeehhhhHHHHHhcccc-cceEEEecccCcHHHHhcC
Confidence 56666665432 2333221 2222222 3467899998887766443
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=89.13 E-value=47 Score=38.06 Aligned_cols=49 Identities=12% Similarity=0.336 Sum_probs=38.1
Q ss_pred cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCC
Q 003217 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~ 271 (838)
.|++++..+.. -....|.. +.|.++.|+.+-+|+.-..||+++++|+.+
T Consensus 62 ~I~iys~sG~l-------l~~i~w~~--~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 62 SIQIYSSSGKL-------LSSIPWDS--GRIVGMGWTDDEELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEEECCCCCE-------eEEEEECC--CCEEEEEECCCCeEEEEEcCCEEEEEeCCC
Confidence 59999887741 12234555 789999999987898888999999999864
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.90 E-value=7.5 Score=43.75 Aligned_cols=163 Identities=11% Similarity=0.087 Sum_probs=93.4
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc--CCCCCcce-----eEEeccccccEEEEEEecCCC-EEEee
Q 003217 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL--DSDDGFGE-----VLSWQAHRGPVLSLCISSYGD-LWSGS 259 (838)
Q Consensus 188 ~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~--~~~~~~~~-----~~~l~gH~~~V~slafs~dG~-L~SgS 259 (838)
+| .+||.|+.+.+.+..+.|....|.|.-|..+.... +..-.++. +..+.--++..+++.|+|+|. +.+-+
T Consensus 142 lH-~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~ 220 (558)
T KOG0882|consen 142 LH-FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN 220 (558)
T ss_pred cc-cCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence 56 89999999999999999999999999999874210 00000110 011112245678999999997 67777
Q ss_pred CCCcEEEEECCCcceeeecCCCceeeeEE----EEeeceeecc-cceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcE
Q 003217 260 EGGGIKIWPWEAIEKALSLKPEERHTAAL----IVERSYIDLR-SHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSF 334 (838)
Q Consensus 260 ~DgtIrvWd~~~~~~~~~~~~~~~~~~~~----~~~~s~~~l~-~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI 334 (838)
.|..||+....++.....+.. ....... ...-..+.+. -....-..-...+......+++.++..+.=++--+|
T Consensus 221 ~DrkVR~F~~KtGklvqeiDE-~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gi 299 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGKLVQEIDE-VLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGI 299 (558)
T ss_pred cccEEEEEEeccchhhhhhhc-cchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeE
Confidence 999999999877542211110 0000000 0000000000 000000000000122334456666777766667789
Q ss_pred EEEeccCccEEEEEecCC
Q 003217 335 ALWDARTRELLKVFNIDG 352 (838)
Q Consensus 335 ~lWD~~tg~~l~~l~~~~ 352 (838)
++.++.|+.+.+.+..+.
T Consensus 300 kvin~~tn~v~ri~gk~e 317 (558)
T KOG0882|consen 300 KVINLDTNTVVRILGKDE 317 (558)
T ss_pred EEEEeecCeEEEEeccch
Confidence 999999999998886443
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=88.21 E-value=1.3 Score=34.24 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA 222 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~ 222 (838)
.+.|.++.++|...+||.|+.||.|.++.++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 45799999999999999999999999999843
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=87.82 E-value=2.6 Score=51.62 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=64.3
Q ss_pred cEEEEECCCeEEEEcC--CCCeeeEeec----CCccEEEEEEcCC-EEEEEeeCCeEEEEeCCCcc-cccccccccCEEE
Q 003217 432 MIWTGGANGLLLQWDP--NGNRLQDFQY----LPFAVQCLCTFGS-QIWVGYMNGIVQVLDLEGNL-LGGWVAHSSPVIK 503 (838)
Q Consensus 432 ~l~Sgs~DgtIrlWD~--~g~~l~tl~~----H~~~V~sls~dG~-~LasGs~DgtIrlWD~~g~~-i~~l~gH~~~V~s 503 (838)
+...|-.++.+..||+ .|+.+-.-.. ......|++..+. +||+|+.+|.|||+|.-|+. -..+.|-.++|..
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~ 623 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIG 623 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeE
Confidence 4567777888999998 4643322122 2345668887765 99999999999999966643 4455676789998
Q ss_pred EE--eCCCEEEEEcCCCCeeeeec
Q 003217 504 MA--VGAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 504 la--~dg~~l~S~S~DgtIrlWdl 525 (838)
|. .||++++.. .+.-+-+.+.
T Consensus 624 iDvt~DGkwilaT-c~tyLlLi~t 646 (794)
T PF08553_consen 624 IDVTADGKWILAT-CKTYLLLIDT 646 (794)
T ss_pred EEecCCCcEEEEe-ecceEEEEEE
Confidence 86 599987733 3444556653
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=87.76 E-value=28 Score=41.91 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=36.4
Q ss_pred EEEEEcCCCcEEEEECCCeEEEEcC--CCCeeeEeec--CCccEEEEEEcCCEEEEEeeCCeEEE
Q 003217 423 EALTTSIDGMIWTGGANGLLLQWDP--NGNRLQDFQY--LPFAVQCLCTFGSQIWVGYMNGIVQV 483 (838)
Q Consensus 423 ~ala~S~dg~l~Sgs~DgtIrlWD~--~g~~l~tl~~--H~~~V~sls~dG~~LasGs~DgtIrl 483 (838)
.++.+..++.|+.+..++...+|.+ .|.....+.. ....|.+|+.....|++++.++.+++
T Consensus 500 ~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 500 VSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARAVLQL 564 (591)
T ss_pred ccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCceEEe
Confidence 3466777777776665554455654 5654333333 24567777666566777777775554
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=86.57 E-value=48 Score=35.22 Aligned_cols=61 Identities=10% Similarity=0.154 Sum_probs=40.5
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCC
Q 003217 201 EASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 201 ~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~ 271 (838)
..++.|+.|+.+| +-+++..... ..... -+..+|..|...++-.++-.=.|+++.++++..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~-------~~~~i--~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~ 65 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS-------KPTRI--LKLSSITQLSVLPELNLLLVLSDGQLYVYDLDS 65 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc-------cceeE--eecceEEEEEEecccCEEEEEcCCccEEEEchh
Confidence 3678999999999 6777773221 12221 123459999999876633222359999999866
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.85 E-value=4 Score=47.69 Aligned_cols=84 Identities=24% Similarity=0.250 Sum_probs=58.9
Q ss_pred EEEEcCCC-cEEEEECCCeEEEEcCCCCeeeEeecCCccEE-EEEE--cCCEEEEEeeCCeEEEEeCC-Ccccccc-ccc
Q 003217 424 ALTTSIDG-MIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQ-CLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGW-VAH 497 (838)
Q Consensus 424 ala~S~dg-~l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~-sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l-~gH 497 (838)
-+.++|.- .+|.+..+|.|-+...+-+++-++.-|...|+ +++. ||+.||+|-.||+|+|-|++ |..+... -.-
T Consensus 25 ~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~ 104 (665)
T KOG4640|consen 25 RIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSV 104 (665)
T ss_pred EEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecccccc
Confidence 34455543 36788888888777777777777776777777 7765 89999999999999999997 5444442 223
Q ss_pred ccCEEEEEeC
Q 003217 498 SSPVIKMAVG 507 (838)
Q Consensus 498 ~~~V~sla~d 507 (838)
...|.++.++
T Consensus 105 e~~is~~~w~ 114 (665)
T KOG4640|consen 105 ETDISKGIWD 114 (665)
T ss_pred ccchheeecc
Confidence 3445555544
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=84.74 E-value=20 Score=39.24 Aligned_cols=66 Identities=23% Similarity=0.386 Sum_probs=44.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc----cccEEEEEEecCCCEEEeeCCCcEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH----RGPVLSLCISSYGDLWSGSEGGGIKI 266 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH----~~~V~slafs~dG~L~SgS~DgtIrv 266 (838)
.+.+..+..++||++|+.++.-...+-|+.... .|+.| ...|.+|.|+||+.||....+|.|+.
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~------------~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~ 211 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT------------TWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQF 211 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-S------------S-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCc------------cceEEccCccceehhceecCCCCEEEEeCCcEEEE
Confidence 457888889999999999888777888986432 23333 46899999999999988889998877
Q ss_pred EE
Q 003217 267 WP 268 (838)
Q Consensus 267 Wd 268 (838)
=+
T Consensus 212 s~ 213 (302)
T PF14870_consen 212 SD 213 (302)
T ss_dssp EE
T ss_pred cc
Confidence 65
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=84.06 E-value=95 Score=36.45 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=24.5
Q ss_pred EEEcCCEEEEEeeCCeEEEEeCC-Cccccccc
Q 003217 465 LCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (838)
Q Consensus 465 ls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (838)
+...+..|++|+.||.|..+|.+ |+.+-++.
T Consensus 402 ~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 402 LATAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred eEecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 45678899999999999999986 77654444
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.00 E-value=4.4 Score=46.47 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=61.8
Q ss_pred EEEECCCeEEEEcC--CCC-eeeEeecCC----ccEEEEEEcCC-EEEEEeeCCeEEEEeCCCc-ccccccccccCEEEE
Q 003217 434 WTGGANGLLLQWDP--NGN-RLQDFQYLP----FAVQCLCTFGS-QIWVGYMNGIVQVLDLEGN-LLGGWVAHSSPVIKM 504 (838)
Q Consensus 434 ~Sgs~DgtIrlWD~--~g~-~l~tl~~H~----~~V~sls~dG~-~LasGs~DgtIrlWD~~g~-~i~~l~gH~~~V~sl 504 (838)
+.|=.|+.|..||+ .|+ .+..-++|. +.-.|++..+. +|++||.+|-|||||..+. .-..+.|--.+|..|
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeE
Confidence 45666888999998 464 444444443 23457766554 9999999999999998654 345577778889887
Q ss_pred E--eCCCEEEEEcCCCCeeeee
Q 003217 505 A--VGAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 505 a--~dg~~l~S~S~DgtIrlWd 524 (838)
. .||++|+. ..+..+-+-+
T Consensus 478 dvtadGKwil~-Tc~tyLlLi~ 498 (644)
T KOG2395|consen 478 DVTADGKWILA-TCKTYLLLID 498 (644)
T ss_pred EeeccCcEEEE-ecccEEEEEE
Confidence 5 68988763 3345555544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 838 | ||||
| 3mtc_A | 313 | Crystal Structure Of Inpp5b In Complex With Phospha | 9e-35 | ||
| 3n9v_A | 313 | Crystal Structure Of Inpp5b Length = 313 | 3e-33 | ||
| 1i9y_A | 347 | Crystal Structure Of Inositol Polyphosphate 5-Phosp | 9e-24 | ||
| 3nr8_B | 316 | Crystal Structure Of Human Ship2 Length = 316 | 3e-17 | ||
| 2xsw_A | 357 | Crystal Structure Of Human Inpp5e Length = 357 | 4e-11 |
| >pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With Phosphatidylinositol 4- Phosphate Length = 313 | Back alignment and structure |
|
| >pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b Length = 313 | Back alignment and structure |
|
| >pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase Domain (Ipp5c) Of Spsynaptojanin Length = 347 | Back alignment and structure |
|
| >pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2 Length = 316 | Back alignment and structure |
|
| >pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e Length = 357 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A Length = 313 | Back alignment and structure |
|---|
Score = 275 bits (704), Expect = 7e-86
Identities = 72/285 (25%), Positives = 134/285 (47%), Gaps = 36/285 (12%)
Query: 545 LYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAA 604
+YT ++N + AGT+NV G++ ++ L WL + + VG QE+++
Sbjct: 1 MYTYIQNFRFFAGTYNVN-GQSPKECLRLWLSNGIQAPDVYCVGFQELDLSKE------- 52
Query: 605 KETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVA 664
+ W + + L + + +V +L G+++ ++V++ Y+ +V+
Sbjct: 53 --AFFFHDTPKEEEWFKAVSEGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAE 110
Query: 665 AVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRP 724
V G +GNKG V +R + ++ +C VN H AAH+E RRN D+ + M FC+P
Sbjct: 111 TVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQP 170
Query: 725 SNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEAR 784
+S D++++LGD NYR++ + ++ +
Sbjct: 171 DPSLPP--------------------------LTISNHDVILWLGDLNYRIEELDVEKVK 204
Query: 785 DFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEK 829
I ++ F L DQL+ ++ A VF+G E ++ F PTYK++
Sbjct: 205 KLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDT 249
|
| >1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A* Length = 347 | Back alignment and structure |
|---|
Score = 253 bits (648), Expect = 2e-77
Identities = 75/304 (24%), Positives = 124/304 (40%), Gaps = 45/304 (14%)
Query: 530 PLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGL 589
P+ + EL +E ++ +N+KI ++N+ A+ I VVG
Sbjct: 3 PIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGF 62
Query: 590 QEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGST----FERVGSRQLAGLL 645
QE+ + + V A W + ++L+ T + ++ S QL G
Sbjct: 63 QEI--------VQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTA 114
Query: 646 IAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV 705
+ ++ +++ + +V+ G G GNKGAV +R D +CF+ H AA
Sbjct: 115 LMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTNY 174
Query: 706 NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMV 765
+ R+ D+ + + F R + + D V
Sbjct: 175 DERDHDYRTIASGLRFRRGRS--------------------------------IFNHDYV 202
Query: 766 IFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTY 825
++ GDFNYR+ +TY+E I+Q +L E DQL +M G VF E I FPPTY
Sbjct: 203 VWFGDFNYRIS-LTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTY 261
Query: 826 KFEK 829
KF+
Sbjct: 262 KFDI 265
|
| >4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B* Length = 316 | Back alignment and structure |
|---|
Score = 239 bits (611), Expect = 2e-72
Identities = 66/288 (22%), Positives = 111/288 (38%), Gaps = 42/288 (14%)
Query: 546 YTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAK 605
+ + + GTWN+G + SW S + V + +
Sbjct: 2 MDEPDMISVFIGTWNMG-SVPPPKNVTSWFTSKGLGKTLDEV----------TVTIPHDI 50
Query: 606 ETVGLE-GSAVGHWWLDMIGKILDDGS--TFERVGSRQLAGLLIAVWVRKNLKDYVGDVD 662
G + S WLD++ L + + + + + L + +AV V+ ++ + V
Sbjct: 51 YVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVS 110
Query: 663 VAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFC 722
++V G +GNKGAVG+ FVNCH + E RRN ++ + R ++
Sbjct: 111 TSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSLG 170
Query: 723 RPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDE 782
+ + + GD NYRLD + E
Sbjct: 171 DRQ---------------------------LNAFDISLRFTHLFWFGDLNYRLD-MDIQE 202
Query: 783 ARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKH 830
++IS++ F+ L DQL E E VF E +I FPPTY++E+
Sbjct: 203 ILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERG 250
|
| >2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 232 bits (592), Expect = 3e-69
Identities = 63/289 (21%), Positives = 110/289 (38%), Gaps = 48/289 (16%)
Query: 546 YTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVG--IVVVGLQEVEMGAGFLAMSA 603
Y N+ + TWN+ + +L +L A +D + V+G+QE
Sbjct: 20 YFPDRNVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQEGCSDR------- 72
Query: 604 AKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDV 663
W + + L G + + S L +++++R++L + +V+
Sbjct: 73 -------------REWETRLQETL--GPHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVEC 117
Query: 664 AAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCR 723
+ V I KGA+G+ + F+ HF + V R D+ + + R
Sbjct: 118 STVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGKVAERLLDYTRTVQALVLPR 177
Query: 724 PSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEA 783
+ + A+ V + D V + GDFN+RL G
Sbjct: 178 NVPDTNPYRSSAADV--------------------TTRFDEVFWFGDFNFRLSG-GRTVV 216
Query: 784 RDFISQRC---FDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEK 829
+ Q L + DQL EM G++F+G +E DI F P+YKF+
Sbjct: 217 DALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDI 265
|
| >2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X* Length = 282 | Back alignment and structure |
|---|
Score = 203 bits (517), Expect = 1e-59
Identities = 41/281 (14%), Positives = 81/281 (28%), Gaps = 58/281 (20%)
Query: 551 NLKILAGTWNVGQGRASQDALISWLGSAASDVG-IVVVGLQEVEMGAGFLAMSAAKETVG 609
L + +WN G + L LG + + ++ V +Q
Sbjct: 6 QLSVHTVSWNSG-HERAPTNLEELLGLNSGETPDVIAVAVQGFGFQT------------- 51
Query: 610 LEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCG 669
+ G + +L + ++ + + + V+ + D
Sbjct: 52 -DKPQQGPACVKNFQSLLTSKG-YTKLKNTITETMGLTVYCLEKHLDQN--TLKNETIIV 107
Query: 670 FGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCS 729
G + +Y++ F + V N + + R
Sbjct: 108 TVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDED--VTSTNTKYAYDTRLDYS-------- 157
Query: 730 AAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQ 789
+ +D + ++GD N R++ A+ + Q
Sbjct: 158 ---------------------------KKDDPSDFLFWIGDLNVRVE-TNATHAKSLVDQ 189
Query: 790 RCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKH 830
D L DQL+ E +F G E + F PTYKF+ +
Sbjct: 190 NNIDGLMAFDQLKKAKE-QKLFDGWTEPQVTFKPTYKFKPN 229
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 9e-06
Identities = 39/330 (11%), Positives = 86/330 (26%), Gaps = 84/330 (25%)
Query: 536 CKELAGKEFLYTRMENLKILAGTWNVGQ-------GRASQ-DALISWLGSAASDVGIVVV 587
++ + +Y + +N Q R L L +++
Sbjct: 102 QRQPSMMTRMYIEQRDR-----LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 588 GLQEVEM-GAG--FLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGL 644
G + G+G ++A+ +WL++ + E L L
Sbjct: 157 G-----VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVLE-----MLQKL 205
Query: 645 LIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHF------ 698
L Y D + + ++ +R + + NC
Sbjct: 206 L-----------YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 699 -AAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLS-------- 749
A A F+ + + R + +A ++ + + + L+
Sbjct: 255 NAKAWNA-------FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 750 ----GLTVEGVPELSEAD----MVI-----FLGDFNYRLDG---ITYDEARDFISQRCFD 793
+ +P E + + D D + D+ I + +
Sbjct: 308 LKYLDCRPQDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESSLN 364
Query: 794 WLRERDQLRAEMEAGNVFQGMREADIKFPP 823
L E + R + +VF P
Sbjct: 365 VL-EPAEYRKMFDRLSVFP----PSAHIPT 389
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Length = 795 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 7e-05
Identities = 57/370 (15%), Positives = 114/370 (30%), Gaps = 94/370 (25%)
Query: 136 RTIVCTEE-QLWAGGENGLRVWNLK----ELYDESESDSVSVSKSKGEDGTAPFKESVKG 190
R++ + +LW G N L +++ Y + ++ S+S+
Sbjct: 266 RSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQR--------------- 310
Query: 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL----LDSDDGFGEVLSWQAHRGPVLS 246
SV + D G +W G G + + + + LS V
Sbjct: 311 --SVRSIFMDS-QGGMWLGTYFGGLN--YYHPIRNRFKNIRNIPYKNSLS----DNVVSC 361
Query: 247 LCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF 306
+ +LW G+ GG+ ++ T + + +
Sbjct: 362 IVEDKDKNLWIGTNDGGLNLY--------------NPIT------QRFTSYTLQEDESA- 400
Query: 307 SSILTSDIKNLLSDHSRAKVWSAGFLS-FALWDARTRELLKVFNIDGQIENRVDMSLLPD 365
I +++IK + D ++ V+ ++ + ++ + Q+ N ++LPD
Sbjct: 401 RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPD 460
Query: 366 FAMEDEFKTK---IVTSS---KKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419
+ T S + + Q SF ++ ++ + +
Sbjct: 461 -------GEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQIT------------ 501
Query: 420 RRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLP------FAVQCLCTFGSQ-- 471
L +W GG GL + + G +Q LP C+ S
Sbjct: 502 ----TLFRDSHKRLWIGGEEGLSV-FKQEGLDIQKASILPVSNVTKLFTNCIYE-ASNGI 555
Query: 472 IWVGYMNGIV 481
IWVG G
Sbjct: 556 IWVGTREGFY 565
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 3e-04
Identities = 37/336 (11%), Positives = 97/336 (28%), Gaps = 43/336 (12%)
Query: 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS---DDGFGEVLSWQAHRGPVLSLC 248
+ + D + + G ++G ++ + ++ L S D+ A P++S+
Sbjct: 99 GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQ 158
Query: 249 IS--SYGDLWSGSEGGGIKIW--PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304
+ G + E + I+++ + E++ +
Sbjct: 159 WNPRDIGTVLISYEYV-TLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVI-- 215
Query: 305 GFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364
S+ + ++++ H + WDA + ++ + N +
Sbjct: 216 --QSLYHPNSLHIITIHEDNSL--------VFWDANSGHMIMARTVFETEINVPQPDYIR 265
Query: 365 DFAMEDEFKTKI--VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422
D + +K+ + + + SR D
Sbjct: 266 DSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLT-----------MIDLGYTP 314
Query: 423 EALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFA--VQCLCTFGSQIWVGYMNG 479
TS +GM + + + P + + +P C I + NG
Sbjct: 315 RYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNG 374
Query: 480 IVQVLDLE-------GNLLGGWVAHSSPVIKMAVGA 508
++ + +L ++ P+ ++ A
Sbjct: 375 EIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAA 410
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 6e-04
Identities = 26/176 (14%), Positives = 47/176 (26%), Gaps = 10/176 (5%)
Query: 182 APFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR 241
P V ++ V + + + + RD I ++ F H+
Sbjct: 189 EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHI-------KISHYPQCFIVDKWLFGHK 241
Query: 242 GPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHL 301
V S+C L S I W W+ K LS + ++ R
Sbjct: 242 HFVSSICCGKDYLLLSAGGDDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQN 300
Query: 302 SVNGFSSILTSDIKNLLSDHSRAKVW--SAGFLSFALWDARTRELLKVFNIDGQIE 355
N S I + A + + + + + +L I
Sbjct: 301 ENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYN 356
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 838 | |||
| 3mtc_A | 313 | Type II inositol-1,4,5-trisphosphate 5-phosphatas; | 100.0 | |
| 4a9c_A | 316 | Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; | 100.0 | |
| 1i9z_A | 347 | Synaptojanin, phosphatidylinositol phosphate phosp | 100.0 | |
| 2xsw_A | 357 | 72 kDa inositol polyphosphate 5-phosphatase; inosi | 100.0 | |
| 2imq_X | 282 | Salivary nitrophorin; ferrous heme, beta-sandwich, | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.98 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.98 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.98 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.98 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.97 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.97 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.97 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.97 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.97 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.97 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.97 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.97 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.97 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.97 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.96 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.96 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.96 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.96 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.96 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.96 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.96 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.96 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.96 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.96 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.96 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.96 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.96 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.96 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.96 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.96 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.96 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.96 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.96 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.96 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.96 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.95 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.95 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.95 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.95 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.95 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.95 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.95 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.95 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.95 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.95 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.95 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.95 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.95 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.95 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.95 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.94 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.94 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.94 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.94 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.94 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.94 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.94 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.93 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.93 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.93 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.93 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.93 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.93 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.93 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.93 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.93 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.93 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.93 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.92 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.92 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.92 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.92 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.92 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.92 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.92 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.92 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.91 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.91 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.91 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.91 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.91 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.9 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.9 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.9 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.9 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.9 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.9 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.9 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.9 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.89 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.89 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.89 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.89 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.89 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.89 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.89 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.89 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.86 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.86 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.85 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.85 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.83 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.81 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.8 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.78 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.75 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.72 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.7 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.7 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.7 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.68 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.67 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.67 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.65 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.65 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.65 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.64 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.63 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.62 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.58 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.58 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.58 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.57 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.56 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.56 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.56 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.55 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.54 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.54 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.53 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.52 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.52 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.48 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.48 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.46 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.44 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.44 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.42 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.41 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.39 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.37 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.32 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.31 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.31 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.29 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.28 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.28 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.27 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.25 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.23 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.23 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.22 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.22 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.19 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.16 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.13 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.13 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.12 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.1 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.09 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.07 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.07 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.06 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.06 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.06 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.06 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.05 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.04 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.02 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.0 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.98 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.95 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.93 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.9 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.88 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.87 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.83 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.82 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.8 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.8 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.79 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.75 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.75 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.73 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.73 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.71 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.7 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.66 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.64 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.61 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.6 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.6 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.58 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.58 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.56 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.54 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.54 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.54 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.52 | |
| 4gz1_A | 256 | Tyrosyl-DNA phosphodiesterase 2; protein-DNA compl | 98.49 | |
| 4fva_A | 256 | 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy | 98.46 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.45 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.43 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.41 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.39 | |
| 4gew_A | 362 | 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy | 98.34 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.32 | |
| 4f1h_A | 250 | Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA com | 98.32 | |
| 1ako_A | 268 | Exonuclease III; AP-endonuclease, DNA repair; 1.70 | 98.32 | |
| 3teb_A | 266 | Endonuclease/exonuclease/phosphatase; PSI-biology, | 98.27 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.21 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.19 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.16 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.14 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.14 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.13 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.05 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.98 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 97.96 | |
| 3g6s_A | 267 | Putative endonuclease/exonuclease/phosphatase fami | 97.94 | |
| 3l1w_A | 257 | Uncharacterized protein; APC29019.2, conserved pro | 97.91 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.85 | |
| 3mpr_A | 298 | Putative endonuclease/exonuclease/phosphatase FAM | 97.84 | |
| 1zwx_A | 301 | SMCL, sphingomyelinase-C; dnase1-like fold, beta-h | 97.84 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.79 | |
| 2jc4_A | 256 | Exodeoxyribonuclease III; hydrolase, repair phosph | 97.76 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.74 | |
| 2ddr_A | 306 | Sphingomyelin phosphodiesterase; DNAse I like fold | 97.63 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.62 | |
| 1vyb_A | 238 | ORF2 contains A reverse transcriptase domain; endo | 97.57 | |
| 3i41_A | 317 | Beta-hemolysin; beta toxin, sphingomyelinase, toxi | 97.57 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.5 | |
| 2voa_A | 257 | AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP | 97.41 | |
| 1wdu_A | 245 | TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA | 97.41 | |
| 2a40_B | 260 | Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse | 97.26 | |
| 2jc5_A | 259 | Exodeoxyribonuclease; hydrolase, repair phosphodie | 97.25 | |
| 2o3h_A | 285 | DNA-(apurinic or apyrimidinic site) lyase; APE, en | 97.19 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.14 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.12 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.06 | |
| 1hd7_A | 318 | DNA-(apurinic or apyrimidinic site) lyase; DNA rep | 97.04 | |
| 2j63_A | 467 | AP-endonuclease; base excision repair, lyase; 2.48 | 97.01 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 96.94 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.94 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.92 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.88 | |
| 2ei9_A | 240 | Non-LTR retrotransposon R1BMKS ORF2 protein; four | 96.69 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.68 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.64 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.64 | |
| 3g91_A | 265 | MTH0212, exodeoxyribonuclease; double-strand speci | 96.61 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 96.59 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 96.53 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 96.52 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.47 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 96.46 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.44 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 96.39 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 96.33 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.3 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.29 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.15 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.13 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.04 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 95.97 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 95.83 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 95.78 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 95.78 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 95.48 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 95.18 | |
| 3ngq_A | 398 | CCR4-NOT transcription complex subunit 6-like; alp | 95.15 | |
| 1sr4_B | 261 | CDT B, cytolethal distending toxin protein B; bact | 95.15 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 95.15 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 95.06 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 94.77 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 94.59 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 94.45 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 94.4 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 93.77 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 93.7 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 93.47 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 93.4 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 93.07 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 92.76 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 92.66 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 92.26 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 92.11 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 92.09 | |
| 2f1n_A | 262 | CDT B, cytolethal distending toxin subunit B; E.co | 91.78 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 91.22 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 91.13 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 87.61 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 86.61 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 86.53 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 86.5 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 86.04 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 84.33 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 81.82 |
| >3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-66 Score=552.93 Aligned_cols=256 Identities=28% Similarity=0.602 Sum_probs=229.5
Q ss_pred cccccceeeEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhh
Q 003217 546 YTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGK 625 (838)
Q Consensus 546 y~~~~~~~i~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 625 (838)
|+...+++|+++|||||+.+| +++|.+||.....+||||||||||+++++..+. ..++...+.|.+.|.+
T Consensus 2 yt~~~~~~i~v~TwNvng~~~-~~~l~~wL~~~~~~pDI~viGlQE~~l~~~~~~---------~~~~~~~~~W~~~i~~ 71 (313)
T 3mtc_A 2 YTYIQNFRFFAGTYNVNGQSP-KECLRLWLSNGIQAPDVYCVGFQELDLSKEAFF---------FHDTPKEEEWFKAVSE 71 (313)
T ss_dssp CEEEEEEEEEEEEEECTTCCC-CSCTHHHHSSSCCCCSEEEEEEECSCCSHHHHT---------TCCCHHHHHHHHHHHH
T ss_pred CceeeccEEEEEEEEcCCccC-chhHHHHhcccCCCCCeEEEEEEecccchhhhc---------ccCcchHHHHHHHHHH
Confidence 778889999999999998877 588999999766679999999999987643221 1223345889999999
Q ss_pred hcCCCCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcchH
Q 003217 626 ILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV 705 (838)
Q Consensus 626 ~l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~ 705 (838)
+|+++..|++|++.+|+||+|+||||+++.++|++|++++|+||++|.+||||||+|||.+++++|||||||||||++++
T Consensus 72 ~L~~~~~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~~ 151 (313)
T 3mtc_A 72 GLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEY 151 (313)
T ss_dssp HSCTTSCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGGH
T ss_pred hcCCCCCEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCchHH
Confidence 99877789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcCcccEEEEeccceeeecCCChHHHHH
Q 003217 706 NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARD 785 (838)
Q Consensus 706 ~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~ 785 (838)
++||+||.+|++++.|.+.... .....+.+||+|||||||||||+.++++++++
T Consensus 152 ~~Rn~d~~~I~~~l~f~~~~~~--------------------------~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~ 205 (313)
T 3mtc_A 152 ERRNQDYKDICSRMQFCQPDPS--------------------------LPPLTISNHDVILWLGDLNYRIEELDVEKVKK 205 (313)
T ss_dssp HHHHHHHHHHHHHCCBCCSCSS--------------------------SCCBCTTSSSEEEEEEECCCCBCSSCHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCc--------------------------cCCccccCCceEEEeccccccccCCCHHHHHH
Confidence 9999999999999999753211 00113678999999999999998679999999
Q ss_pred HhhhcchHHHhhccchHHHHhcCCCcCCcccCCCCCCCCCcccCCCCCccCC
Q 003217 786 FISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAGT 837 (838)
Q Consensus 786 ~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~~ 837 (838)
+|++++|+.|+++|||+++|++|++|.||+|++|+|||||||++||++|..+
T Consensus 206 ~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s~~ydts 257 (313)
T 3mtc_A 206 LIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDTS 257 (313)
T ss_dssp HHHTTCHHHHHTTBHHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTSSSBCCS
T ss_pred HHhcCCHHHHHHhHHHHHHHHcCCccCCcccCCcCcCCCccCcCCCcccccc
Confidence 9999999999999999999999999999999999999999999999998764
|
| >4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-62 Score=526.57 Aligned_cols=237 Identities=29% Similarity=0.513 Sum_probs=202.6
Q ss_pred cccceeeEEEEEEeCCCCCCcccccccccCC-----------CCCceEEEEEeecccCccchhhhhhhhhhccCCCCcch
Q 003217 548 RMENLKILAGTWNVGQGRASQDALISWLGSA-----------ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVG 616 (838)
Q Consensus 548 ~~~~~~i~~~twNv~~~~~~~~~l~~wl~~~-----------~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (838)
+...++||++|||||+..| +++|.+||.+. ..++|||||||||+.+. .
T Consensus 4 ~~~~i~i~vgTwNv~g~~p-~~~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~--------------------~ 62 (316)
T 4a9c_A 4 EPDMISVFIGTWNMGSVPP-PKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVG--------------------D 62 (316)
T ss_dssp --CEEEEEEEEEECTTSCC-CSCCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSC--------------------H
T ss_pred CCCeEEEEEEEeEcCCcCC-CcchhHhhcccccccCcccccccCCCcEEEEeccccccc--------------------h
Confidence 3456899999999998655 68999999853 12479999999998541 2
Q ss_pred hhHHHHHhhhcCC--CCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEE
Q 003217 617 HWWLDMIGKILDD--GSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFV 694 (838)
Q Consensus 617 ~~w~~~~~~~l~~--~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv 694 (838)
+.|.+.|.++|++ ...|.+|++.+|+||+|+||+|+++.++|++|++++|+||++|.+||||||+|||.+++++||||
T Consensus 63 ~~W~~~i~~~L~~~~~~~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FV 142 (316)
T 4a9c_A 63 REWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFV 142 (316)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEE
T ss_pred hHHHHHHHHHhccccCCCEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEE
Confidence 6799999999964 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCcchHHHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcCcccEEEEeccceee
Q 003217 695 NCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYR 774 (838)
Q Consensus 695 ~~HLaa~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyR 774 (838)
|||||||++++++||+||.+|++++.|...... ......++||||||||||||
T Consensus 143 n~HLaAg~~~~~~Rn~d~~~I~~~l~f~~~~~~---------------------------~~d~~~~~d~vfw~GDLNyR 195 (316)
T 4a9c_A 143 NCHLTSGNEKTARRNQNYLDILRLLSLGDRQLN---------------------------AFDISLRFTHLFWFGDLNYR 195 (316)
T ss_dssp EEECCCSTTCHHHHHHHHHHHHHHCCC----------------------------------CCTTTTSSEEEEEEECCCC
T ss_pred EeccccCchHHHHHHHHHHHHHHhCCCCCCCcC---------------------------ccccCCcCCeEEEcCCccCC
Confidence 999999999999999999999999998642110 00112468999999999999
Q ss_pred ecCCChHHHHHHhhhcchHHHhhccchHHHHhcCCCcCCcccCCCCCCCCCcccCCCCC
Q 003217 775 LDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAG 833 (838)
Q Consensus 775 i~~~~~~~~~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~ 833 (838)
|++ ++++++++|++++|+.|+++|||++||++|++|.||+|++|+|||||||++|+.+
T Consensus 196 i~~-~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E~~i~F~PTYKy~~~s~~ 253 (316)
T 4a9c_A 196 LDM-DIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRD 253 (316)
T ss_dssp BSS-CHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTCSS
T ss_pred cCC-CHHHHHHHHhcccHHHHhccChHHHHHhcCCcccccccCCcccCCCccccCCCcc
Confidence 996 9999999999999999999999999999999999999999999999999999964
|
| >1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-58 Score=503.05 Aligned_cols=267 Identities=29% Similarity=0.497 Sum_probs=234.7
Q ss_pred CCCCchhhhhhhhccccccccccceeeEEEEEEeCCCCCCcccccccccCC-CCCceEEEEEeecc-cCccchhhhhhhh
Q 003217 528 PGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSA-ASDVGIVVVGLQEV-EMGAGFLAMSAAK 605 (838)
Q Consensus 528 ~~~~d~~~~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~~~~~l~~wl~~~-~~~~di~vig~QE~-~~~~~~~~~~~~~ 605 (838)
++|+++++..++..++.+|+....++|+++||||++..| +++|.+||... ...||||||||||+ +++++.+..
T Consensus 1 ~~p~~~~~~~~l~~r~~e~~~~~~~~i~v~TwNv~g~~~-~~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~---- 75 (347)
T 1i9z_A 1 YDPIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSA-TTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVIS---- 75 (347)
T ss_dssp CCHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEECTTCCC-CSCCHHHHSCSSSCCCSEEEEEEECSSCCC-----C----
T ss_pred CCchHHHHHHHHHHHHHhcCCCCCcEEEEEeEecCCCCC-chhHHHHhccccCCCCCEEEEEeEEeecCchhhhcc----
Confidence 578899999999999999999999999999999998877 56799999853 35789999999998 576653321
Q ss_pred hhccCCCCcchhhHHHHHhhhcC----CCCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeE
Q 003217 606 ETVGLEGSAVGHWWLDMIGKILD----DGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVG 681 (838)
Q Consensus 606 ~~~~~~~~~~~~~w~~~~~~~l~----~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~ 681 (838)
..+...+.|.+.|.++|+ .+..|.++.+.+|+|++|+||+|.++.++|++|+++.++||++|.+||||||+
T Consensus 76 -----~~~~~~~~w~~~i~~~L~~~~~~~~~Y~~v~s~~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~ 150 (347)
T 1i9z_A 76 -----ADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVA 150 (347)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHTCCSSCCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEE
T ss_pred -----cCchhHHHHHHHHHHHHhhcccCCCceeEEEEeeccceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEE
Confidence 122345789999999996 35789999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCeEEEEEeccccCCcchHHHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcCc
Q 003217 682 LRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSE 761 (838)
Q Consensus 682 i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (838)
+||.+++++||||||||+||++++++||+||+.|++.|.|.+.. .+.+
T Consensus 151 vr~~~~~~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~l~f~~~~--------------------------------~i~~ 198 (347)
T 1i9z_A 151 IRFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGR--------------------------------SIFN 198 (347)
T ss_dssp EEEEETTEEEEEEEEECCCCSSCHHHHHHHHHHHHHHCCCGGGC--------------------------------CTTS
T ss_pred EEEEECCeEEEEEEecCCCCCccHHHHHHHHHHHHHhhccCccc--------------------------------cccc
Confidence 99999999999999999999999999999999999999886421 2467
Q ss_pred ccEEEEeccceeeecCCChHHHHHHhhhcchHHHhhccchHHHHhcCCCcCCcccCCCCCCCCCcccCCCCCccCC
Q 003217 762 ADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAGT 837 (838)
Q Consensus 762 ~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~~ 837 (838)
+|++||||||||||+. +.++++++|++++|+.|+++|||+++|++|++|.||+|++|+|+|||||++++++|..+
T Consensus 199 ~d~v~~~GDlNyRi~~-~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~~~yd~s 273 (347)
T 1i9z_A 199 HDYVVWFGDFNYRISL-TYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTS 273 (347)
T ss_dssp SSEEEEEEECCCCBSS-CHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSCBCCS
T ss_pred CccEEEecccccccCC-CHHHHHHHHhhccHHHhhcccHHHHHHhcCCcccccccCCCCCCCCcccCCCCcccccc
Confidence 8999999999999996 99999999999999999999999999999999999999999999999999999988654
|
| >2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-57 Score=496.31 Aligned_cols=250 Identities=23% Similarity=0.384 Sum_probs=217.9
Q ss_pred cccccccceeeEEEEEEeCCCCCCcccccccccCC--CCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHH
Q 003217 544 FLYTRMENLKILAGTWNVGQGRASQDALISWLGSA--ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLD 621 (838)
Q Consensus 544 ~~y~~~~~~~i~~~twNv~~~~~~~~~l~~wl~~~--~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 621 (838)
..|+...+++|+++||||++.++.+++|.+||... ...+|||||||||++.. .+.|.+
T Consensus 18 ~~~~~~~~l~i~v~TwNv~g~~~~~~~L~~~l~~~~~~~~pDI~viGlQEi~~~--------------------~~~W~~ 77 (357)
T 2xsw_A 18 ARYFPDRNVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQEGCSD--------------------RREWET 77 (357)
T ss_dssp HHHCTTCEEEEEEEEEECTTCSSCCSCCHHHHSCTTCCSCCSEEEEEEESCCSC--------------------HHHHHH
T ss_pred hhcCCCCCceEEEEEEecCCCCCCcccHHHHhccccccCCCCEEEEEeeeccch--------------------HHHHHH
Confidence 44777888999999999998777678999999642 34689999999998641 267999
Q ss_pred HHhhhcCCCCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCC
Q 003217 622 MIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAH 701 (838)
Q Consensus 622 ~~~~~l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~ 701 (838)
.|.++|+ ..|+++.+.+|+|++|+||+|+++.++|++|+++.|+||++|.+||||||+|||.+++++||||||||+||
T Consensus 78 ~l~~~L~--~~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~ 155 (357)
T 2xsw_A 78 RLQETLG--PHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSG 155 (357)
T ss_dssp HHHHHHC--TTEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCS
T ss_pred HHHHHhC--CcccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCC
Confidence 9999995 58999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcCcccEEEEeccceeeecCCChH
Q 003217 702 LEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYD 781 (838)
Q Consensus 702 ~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~ 781 (838)
++++++||+||.+|++.|.|.+.....++ .. ......+.++|+|||+|||||||++ +++
T Consensus 156 ~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~----------~~----------~~~~~~~~~~d~vfw~GDlNyRi~~-~~~ 214 (357)
T 2xsw_A 156 DGKVAERLLDYTRTVQALVLPRNVPDTNP----------YR----------SSAADVTTRFDEVFWFGDFNFRLSG-GRT 214 (357)
T ss_dssp TTCHHHHHHHHHHHHHHCCCCSSSCCSSG----------GG----------CBTTBGGGSSSEEEEEEECCCCBSS-CHH
T ss_pred CchHHHHHHHHHHHHHHhccccccccccc----------cc----------ccccccccccceEEEecccCccccc-chH
Confidence 99999999999999999999753221000 00 0011124578999999999999997 889
Q ss_pred HHHHHhh---hcchHHHhhccchHHHHhcCCCcCCcccCCCCCCCCCcccCCCCCccC
Q 003217 782 EARDFIS---QRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAG 836 (838)
Q Consensus 782 ~~~~~i~---~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~ 836 (838)
+++++++ +++|+.|+++|||+++|++|++|.||+|++|+|||||||++|+++|..
T Consensus 215 ~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~~t~~Ydt 272 (357)
T 2xsw_A 215 VVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTYDS 272 (357)
T ss_dssp HHHHHHC---CCCHHHHHTTBHHHHHHHHTSSSTTCBCCCCCSCCCBCBCTTSSSBCC
T ss_pred HHHHHHhhcchhhHHHHHhcChhHHHHhccccccCccccCCCCCCCccccCCCccccc
Confidence 9999986 578999999999999999999999999999999999999999998863
|
| >2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-45 Score=393.00 Aligned_cols=228 Identities=18% Similarity=0.308 Sum_probs=198.0
Q ss_pred ccceeeEEEEEEeCCCCCCcccccccccCC-CCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhc
Q 003217 549 MENLKILAGTWNVGQGRASQDALISWLGSA-ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKIL 627 (838)
Q Consensus 549 ~~~~~i~~~twNv~~~~~~~~~l~~wl~~~-~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l 627 (838)
...++|+++||||++..| +++|.+|+... ..+||||||||||+.+.... ....+.|.+.|.+.|
T Consensus 4 ~~~~~i~V~T~Nv~~~~~-~~~l~~wl~~~~~~~pDI~viglQEv~~~~~~--------------~~~~~~w~~~l~~~L 68 (282)
T 2imq_X 4 PAQLSVHTVSWNSGHERA-PTNLEELLGLNSGETPDVIAVAVQGFGFQTDK--------------PQQGPACVKNFQSLL 68 (282)
T ss_dssp CSEEEEEEEEEEEETCCC-CSCCHHHHTCTTSCCCSEEEEEEEESCTTTCT--------------TCCHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEeCCCCcC-chhHHHHhcccccCCCCEEEEEeeeecccccc--------------chhhHHHHHHHHHhc
Confidence 345789999999987766 46789999853 36789999999999864321 123578999999999
Q ss_pred CCCCCEEEEee--eecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcchH
Q 003217 628 DDGSTFERVGS--RQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV 705 (838)
Q Consensus 628 ~~~~~y~~v~s--~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~ 705 (838)
+ ...|..+++ .+|.|++|+||+|.++.+.|+++++ +|+.+.+||||+|++||.+++++||||||||+|+++++
T Consensus 69 ~-~~~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~~ 143 (282)
T 2imq_X 69 T-SKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTS 143 (282)
T ss_dssp H-HTTEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCT
T ss_pred C-CCceEEEEeccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCchH
Confidence 5 457999999 8899999999999999888888765 45566789999999999999999999999999999889
Q ss_pred HHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcCcccEEEEeccceeeecCCChHHHHH
Q 003217 706 NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARD 785 (838)
Q Consensus 706 ~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~ 785 (838)
++|+++++.|++.+.+ +.++|++||+||||||++. +.+++++
T Consensus 144 ~~R~~~~~~I~~~~~~-------------------------------------~~~~~~vi~~GDfN~r~~~-~~~~~~~ 185 (282)
T 2imq_X 144 TNTKYAYDTRLDYSKK-------------------------------------DDPSDFLFWIGDLNVRVET-NATHAKS 185 (282)
T ss_dssp TSSSSSCCGGGCTTSS-------------------------------------SSCCSEEEEEEECSCCBCS-CHHHHHH
T ss_pred HHHHHHHHHHHHhhhc-------------------------------------cCccceEEEecccccccCC-CHHHHHH
Confidence 9999999999876532 2357899999999999997 8899999
Q ss_pred HhhhcchHHHhhccchHHHHhcCCCcCCcccCCCCCCCCCcccCCCCCcc
Q 003217 786 FISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLA 835 (838)
Q Consensus 786 ~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~ 835 (838)
+|++++|+.|+++|||+++|+ |.+|.||+|++|+|+|||||+.++++|.
T Consensus 186 ~i~~~~~~~l~~~DqL~~~~~-~~~f~~f~e~~i~f~PTYk~~~~~~~y~ 234 (282)
T 2imq_X 186 LVDQNNIDGLMAFDQLKKAKE-QKLFDGWTEPQVTFKPTYKFKPNTDEYD 234 (282)
T ss_dssp HHHTTCHHHHHTTBTHHHHHH-TTSSTTCBCCCCCSCCCBCBCTTSSCBC
T ss_pred HHhhccHHHHhhhhHHHHhhc-cccccccccCCcCCCCCccccCCCcccc
Confidence 999999999999999999999 9999999999999999999999998774
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=325.29 Aligned_cols=267 Identities=18% Similarity=0.221 Sum_probs=221.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|.|++|+|++.+|+||+.||+|++||+.++ +...++++|.++|++|+|+|+|+ |+|||.|++|+|||+
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~--------~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--------DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--------CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 889999999999999999999999999999987 56788999999999999999998 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
.+.+....+. +| ...+.++++.+++..+++++ |++|++||+++++++.++
T Consensus 180 ~~~~~~~~~~-------------------~h----------~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~ 230 (410)
T 1vyh_C 180 QGFECIRTMH-------------------GH----------DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 230 (410)
T ss_dssp TSSCEEECCC-------------------CC----------SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCceeEEEc-------------------CC----------CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 7654332221 12 44678888888888888877 689999999999999998
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec------cCccccCCCce
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA------KGGFGDDNRRT 422 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~------~g~~~~~~~~v 422 (838)
.+|...+..+. +.+++..+++++.++..++|. ...+..|...|
T Consensus 231 ~~h~~~v~~~~-------------------------------~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v 279 (410)
T 1vyh_C 231 TGHREWVRMVR-------------------------------PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279 (410)
T ss_dssp ECCSSCEEEEE-------------------------------ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred eCCCccEEEEE-------------------------------ECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceE
Confidence 87765433322 223333445566666656554 12345677888
Q ss_pred EEEEEcCC--------------------C-cEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeC
Q 003217 423 EALTTSID--------------------G-MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMN 478 (838)
Q Consensus 423 ~ala~S~d--------------------g-~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~D 478 (838)
.+++++|+ | .+++|+.|++|++||+ +++++.++.+|...|+++++ +|++|++|+.|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D 359 (410)
T 1vyh_C 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD 359 (410)
T ss_dssp EEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred EEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCC
Confidence 89999885 3 4899999999999999 78999999999999999876 68899999999
Q ss_pred CeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 479 GIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 479 gtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
++|++||+. ++++.++.+|.+.|+++++ ++.+++|||.|++||+|++
T Consensus 360 ~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 360 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999987 7889999999999999986 6778999999999999986
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-34 Score=314.32 Aligned_cols=287 Identities=14% Similarity=0.056 Sum_probs=206.3
Q ss_pred ceeEEEEec--CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 133 CFLRTIVCT--EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 133 ~~~~~l~~~--~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
..+.+++.. +..|.+++|.++|+||......... . .+...........+ ..+|.|++|+|++ .|++|+
T Consensus 31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~-----~---~~~~~~~~~~~~~~-~~~v~~~~~s~d~-~l~~~s 100 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDP-----C---AAPNEGFCSAGVQT-EAGVADLTWVGER-GILVAS 100 (344)
T ss_dssp SEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSG-----G---GTTCGGGCSEEEEE-SSCEEEEEEETTT-EEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccc-----c---ccCCcceeeeeecc-CCCEEEEEEeCCC-eEEEEE
Confidence 457777765 3455567799999998421100000 0 00000000111112 5689999999984 688999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
.||+||+||+.++. ........+.+|.+.|++|+|+|+|+ |+||+.|++||+||+.+++....+.
T Consensus 101 ~dg~v~lWd~~~~~----~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~---------- 166 (344)
T 4gqb_B 101 DSGAVELWELDENE----TLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR---------- 166 (344)
T ss_dssp TTSEEEEEEECTTS----SCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC----------
T ss_pred CCCEEEEEeccCCC----ceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc----------
Confidence 99999999999862 11112234569999999999999998 7899999999999998754332221
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
+| ...|.++++.+++. .+++++ |++|++||+++++++..+..+
T Consensus 167 ---------~h----------~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~---------------- 211 (344)
T 4gqb_B 167 ---------AH----------AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS---------------- 211 (344)
T ss_dssp ---------CC----------SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------------------
T ss_pred ---------Cc----------CCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc----------------
Confidence 22 45678888877664 566666 689999999998875544211
Q ss_pred cccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCC-Cc-EEEEECCCeEEEE
Q 003217 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID-GM-IWTGGANGLLLQW 445 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~d-g~-l~Sgs~DgtIrlW 445 (838)
.+...+.+++++|+ +. +++|+.|++|++|
T Consensus 212 -------------------------------------------------~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~w 242 (344)
T 4gqb_B 212 -------------------------------------------------APGYLPTSLAWHPQQSEVFVFGDENGTVSLV 242 (344)
T ss_dssp ---------------------------------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred -------------------------------------------------eeeccceeeeecCCCCcceEEeccCCcEEEE
Confidence 11123456777774 44 6899999999999
Q ss_pred cC-CCCeeeEeecCCccEEEEEE--cC-CEEEEEeeCCeEEEEeCCCcccccccccccCEEEEEe--CCC-EEEEEcCCC
Q 003217 446 DP-NGNRLQDFQYLPFAVQCLCT--FG-SQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV--GAG-YIFTLANHG 518 (838)
Q Consensus 446 D~-~g~~l~tl~~H~~~V~sls~--dG-~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~--dg~-~l~S~S~Dg 518 (838)
|+ ++++++++.+|...|+++++ +| ++|++|+.|++|+|||++...+..+.+|.+.|++|++ +++ .++|+|.|+
T Consensus 243 d~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~ 322 (344)
T 4gqb_B 243 DTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDH 322 (344)
T ss_dssp ESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCC
Confidence 99 78999999999999999976 56 4799999999999999985555568899999999986 554 577999999
Q ss_pred CeeeeecCC
Q 003217 519 GIRGWNVTS 527 (838)
Q Consensus 519 tIrlWdl~s 527 (838)
+|++|++..
T Consensus 323 ~v~~w~v~~ 331 (344)
T 4gqb_B 323 QVVHHVVPT 331 (344)
T ss_dssp CEEEEECCC
T ss_pred eEEEEECCC
Confidence 999999865
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=331.83 Aligned_cols=362 Identities=16% Similarity=0.179 Sum_probs=221.2
Q ss_pred eeEEEEecCC---EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE
Q 003217 134 FLRTIVCTEE---QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (838)
Q Consensus 134 ~~~~l~~~~~---~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG 209 (838)
.+.+++...+ .|.+ +.|++|++||..+..... .+. .| ..+|.|++|+|+|++|+||
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~-----------------~l~--~H-~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS-----------------TFG--EH-TKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE-----------------EEC--CC-SSCEEEEEECTTSSEEEEE
T ss_pred CceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee-----------------eec--cc-cCceEEEEECCCCCEEEEE
Confidence 4556665533 3555 569999999986533211 111 23 7799999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEec-------cccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCC
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQ-------AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPE 281 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~-------gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~ 281 (838)
+.|++|++||+.++ +....+. +|.+.|++|+|+|||+ |+|||.|++|||||+.+++....+...
T Consensus 209 s~D~~i~lwd~~~g--------~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~ 280 (611)
T 1nr0_A 209 GGDGTIVLYNGVDG--------TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280 (611)
T ss_dssp ETTSCEEEEETTTC--------CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred ECCCcEEEEECCCC--------cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence 99999999999887 4555663 8999999999999998 789999999999999875543322111
Q ss_pred ---ce----------eeeEEEEeec--eeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEE
Q 003217 282 ---ER----------HTAALIVERS--YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELL 345 (838)
Q Consensus 282 ---~~----------~~~~~~~~~s--~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l 345 (838)
.. ...+...+.. +++.... .......-+...+.++++++++..+++++ |++|++||+.++++.
T Consensus 281 ~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELG-SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN 359 (611)
T ss_dssp SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC-CcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Confidence 00 0010000000 0011000 00000011356789999999999999887 689999999999887
Q ss_pred EEE-ecCCceEEeeecccCcc---cccccceeeEEEecCC----------------------------------------
Q 003217 346 KVF-NIDGQIENRVDMSLLPD---FAMEDEFKTKIVTSSK---------------------------------------- 381 (838)
Q Consensus 346 ~~l-~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~s~~~---------------------------------------- 381 (838)
..+ ..|...+..+.+++... ...+..++++......
T Consensus 360 ~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~ 439 (611)
T 1nr0_A 360 RVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 439 (611)
T ss_dssp ECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEET
T ss_pred eecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeC
Confidence 665 33444334444432211 0112222211110000
Q ss_pred -------CCcceeeeeEeecCcceeeecCCcEEEEec--cCcc-----ccCCCceEEEEEcCCCc-EEEEECCCeEEEEc
Q 003217 382 -------KDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGGF-----GDDNRRTEALTTSIDGM-IWTGGANGLLLQWD 446 (838)
Q Consensus 382 -------~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~~-----~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD 446 (838)
......++.|.+++..+++|..++..++|. .+.+ ..|...|.+++|+|||+ |++++.|++|++||
T Consensus 440 ~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~ 519 (611)
T 1nr0_A 440 GKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 519 (611)
T ss_dssp TEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEE
Confidence 001123455666666666666666655554 1111 24556677777777766 56777777777777
Q ss_pred C-C-CCeeeE--eecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Cc-cc-cccccc-ccCEEEEEe--CCCEEEEE
Q 003217 447 P-N-GNRLQD--FQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GN-LL-GGWVAH-SSPVIKMAV--GAGYIFTL 514 (838)
Q Consensus 447 ~-~-g~~l~t--l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~-~i-~~l~gH-~~~V~sla~--dg~~l~S~ 514 (838)
+ + ++++.+ +.+|...|+++++ ||++|++|+.|++|+|||++ +. ++ ..+.+| .+.|+++++ +++ |+|+
T Consensus 520 ~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~ 598 (611)
T 1nr0_A 520 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSA 598 (611)
T ss_dssp GGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEE
T ss_pred cCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEe
Confidence 6 3 444443 2337777776654 56677777777777777765 22 33 556677 677777663 454 7777
Q ss_pred cCCCCeeeeec
Q 003217 515 ANHGGIRGWNV 525 (838)
Q Consensus 515 S~DgtIrlWdl 525 (838)
|.|++||+|++
T Consensus 599 ~~D~~i~lW~~ 609 (611)
T 1nr0_A 599 GQDSNIKFWNV 609 (611)
T ss_dssp ETTSCEEEEEC
T ss_pred cCCCCEEEEec
Confidence 77777777765
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=321.14 Aligned_cols=330 Identities=18% Similarity=0.238 Sum_probs=257.3
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+++++.. +..|.+ +.|+.|++||... .... .+ ..+ ..+|.+++|+|++++|++|+
T Consensus 223 ~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~~~-----------------~~--~~~-~~~v~~v~~~~d~~~l~~~~ 281 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQ-----------------TL--TGH-SSSVNGVAFRPDGQTIASAS 281 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTS-CEEE-----------------EE--CCC-SSCEEEEEECTTSSEEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEE-----------------EE--ecC-CCCEEEEEEcCCCCEEEEEe
Confidence 35566654 345555 5689999999642 1110 11 123 77999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
.|++|++|+... +....+.+|.+.|++++|+|+++ |++++.|++|++||..+.. ...+
T Consensus 282 ~d~~i~~w~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~~----------- 340 (577)
T 2ymu_A 282 DDKTVKLWNRNG---------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTL----------- 340 (577)
T ss_dssp TTSCEEEEETTS---------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-EEEE-----------
T ss_pred CCCEEEEEeCCC---------cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eEEE-----------
Confidence 999999999765 46778899999999999999998 7899999999999985421 1111
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (838)
.++ ...+.++++++++..+++++ +++|++||. +++++..+..|...+..+.+++.....+
T Consensus 341 --------~~~----------~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 401 (577)
T 2ymu_A 341 --------TGH----------SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIA 401 (577)
T ss_dssp --------CCC----------SSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred --------eCC----------CCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEE
Confidence 111 44677888888888888876 578999995 6788888888877666777776544322
Q ss_pred --ccceeeEEEecC--------CCCcceeeeeEeecCcceeeecCCcEEEEec-cC----ccccCCCceEEEEEcCCCc-
Q 003217 369 --EDEFKTKIVTSS--------KKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-KG----GFGDDNRRTEALTTSIDGM- 432 (838)
Q Consensus 369 --~~~~~~~~~s~~--------~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~g----~~~~~~~~v~ala~S~dg~- 432 (838)
..+-.++++... .....+..+.|.+++..++++..++..+++. .+ .+..|...|.+++|+||++
T Consensus 402 ~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~ 481 (577)
T 2ymu_A 402 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT 481 (577)
T ss_dssp EEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCE
T ss_pred EEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCE
Confidence 111122232211 1223345677888888888888888777775 22 3456788999999999998
Q ss_pred EEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCCcccccccccccCEEEEEe--CC
Q 003217 433 IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV--GA 508 (838)
Q Consensus 433 l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~--dg 508 (838)
|++++.|++|++||.+|++++++.+|...|+++++ +|++|++|+.||+|+|||.+++++.++.+|.+.|++|++ |+
T Consensus 482 las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg 561 (577)
T 2ymu_A 482 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG 561 (577)
T ss_dssp EEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTS
T ss_pred EEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCC
Confidence 78999999999999999999999999999999875 789999999999999999989999999999999999984 78
Q ss_pred CEEEEEcCCCCeeeee
Q 003217 509 GYIFTLANHGGIRGWN 524 (838)
Q Consensus 509 ~~l~S~S~DgtIrlWd 524 (838)
++|+|+|.|++|++||
T Consensus 562 ~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 562 QTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEeCCCEEEEeC
Confidence 9999999999999997
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=304.14 Aligned_cols=261 Identities=16% Similarity=0.156 Sum_probs=215.5
Q ss_pred CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003217 143 EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (838)
Q Consensus 143 ~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~ 221 (838)
..|.+ +.|++|||||+.+..... .+....| ..+|.|+++++++.+++||+.|++|++||+.
T Consensus 49 ~~l~tgs~D~~v~vW~~~~~~~~~-----------------~~~l~gh-~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 49 ETVVTGSLDDLVKVWKWRDERLDL-----------------QWSLEGH-QLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp CEEEEEETTSCEEEEEEETTEEEE-----------------EEEECCC-SSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CEEEEEcCCCCEEEEECCCCCeee-----------------eeeeccC-CCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 35665 569999999986432110 0111223 7899999999999999999999999999999
Q ss_pred CCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccc
Q 003217 222 ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300 (838)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~ 300 (838)
++ +....+.+|...|.+++|+|+|+ |++|+.|++|++|+++++.....+.. +
T Consensus 111 ~~--------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~-------------------~ 163 (321)
T 3ow8_A 111 NG--------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT-------------------R 163 (321)
T ss_dssp TT--------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEEC-------------------S
T ss_pred CC--------CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecC-------------------C
Confidence 87 67788899999999999999998 78999999999999977554332211 1
Q ss_pred eeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEec
Q 003217 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTS 379 (838)
Q Consensus 301 ~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~ 379 (838)
...+.++++++++..+++++ +++|++||+++++++.++.+|
T Consensus 164 ----------~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h---------------------------- 205 (321)
T 3ow8_A 164 ----------GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH---------------------------- 205 (321)
T ss_dssp ----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC----------------------------
T ss_pred ----------CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc----------------------------
Confidence 33577888888898888877 678999999998876655332
Q ss_pred CCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeec
Q 003217 380 SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY 457 (838)
Q Consensus 380 ~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~ 457 (838)
...|.+++|+|++. |++|+.|++|++||+ +++++.++.+
T Consensus 206 ---------------------------------------~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 246 (321)
T 3ow8_A 206 ---------------------------------------AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG 246 (321)
T ss_dssp ---------------------------------------SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred ---------------------------------------CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC
Confidence 22345678899987 789999999999999 6899999999
Q ss_pred CCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 458 LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 458 H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
|...|.++++ +|++|++|+.|++|+|||+. ++++.++.+|.+.|+++++ ++++|+|++.|++|++||+
T Consensus 247 h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 247 HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 9999999876 68899999999999999997 7889999999999999986 6789999999999999995
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=324.79 Aligned_cols=359 Identities=13% Similarity=0.102 Sum_probs=210.8
Q ss_pred ecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003217 140 CTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (838)
Q Consensus 140 ~~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd 219 (838)
.+++.|..+.+++|++||+.+..... .+. .| ..+|.|++|+|+|++||||+.||+||+||
T Consensus 28 pdg~~l~~~~~~~v~l~~~~~~~~~~-----------------~~~--~h-~~~v~~~~~spdg~~lasg~~d~~v~lWd 87 (611)
T 1nr0_A 28 PAGDKIQYCNGTSVYTVPVGSLTDTE-----------------IYT--EH-SHQTTVAKTSPSGYYCASGDVHGNVRIWD 87 (611)
T ss_dssp TTSSEEEEEETTEEEEEETTCSSCCE-----------------EEC--CC-SSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCCEEEeCCCCEEEEecCCCcccCe-----------------Eec--CC-CCceEEEEECCCCcEEEEEeCCCCEEEeE
Confidence 34557777778899999997543221 122 34 77999999999999999999999999999
Q ss_pred CCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCC----CcEEEEECCCcceeeecCCCceeeeEEEE----
Q 003217 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG----GGIKIWPWEAIEKALSLKPEERHTAALIV---- 290 (838)
Q Consensus 220 ~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D----gtIrvWd~~~~~~~~~~~~~~~~~~~~~~---- 290 (838)
+.++. ......+.+|.++|.+|+|+|||+ |++++.| ++|++||... ....+..+...+..+..
T Consensus 88 ~~~~~------~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~--~~~~l~gh~~~v~~v~f~p~~ 159 (611)
T 1nr0_A 88 TTQTT------HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT--SNGNLTGQARAMNSVDFKPSR 159 (611)
T ss_dssp SSSTT------CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC--BCBCCCCCSSCEEEEEECSSS
T ss_pred CCCCc------ceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC--CcceecCCCCCceEEEECCCC
Confidence 97542 023445677777777777777776 5565544 3566666422 11111111111111111
Q ss_pred ---------eece--eecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEe-------cC
Q 003217 291 ---------ERSY--IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN-------ID 351 (838)
Q Consensus 291 ---------~~s~--~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~-------~~ 351 (838)
+... ++.... .......-+...|.++++++++..+++++ |++|++||+.+++++.++. +|
T Consensus 160 ~~~l~s~s~D~~v~lwd~~~~-~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h 238 (611)
T 1nr0_A 160 PFRIISGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 238 (611)
T ss_dssp SCEEEEEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred CeEEEEEeCCCeEEEEECCCC-eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccccccc
Confidence 1111 110000 00000011255789999999999988877 6899999999999988884 56
Q ss_pred CceEEeeecccCcccc----cccceeeEEEecC-----------------------------------------------
Q 003217 352 GQIENRVDMSLLPDFA----MEDEFKTKIVTSS----------------------------------------------- 380 (838)
Q Consensus 352 ~~~~~~~~~s~~~~~~----~~~~~~~~~~s~~----------------------------------------------- 380 (838)
...+..+.+++..... .+..+++|.+...
T Consensus 239 ~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~ 318 (611)
T 1nr0_A 239 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQ 318 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcce
Confidence 6656677777654322 2333333321110
Q ss_pred ---CCCcceeeeeEeecCcceeeecCCcEEEEec--cCc----c-ccCC-------------------------------
Q 003217 381 ---KKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGG----F-GDDN------------------------------- 419 (838)
Q Consensus 381 ---~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~----~-~~~~------------------------------- 419 (838)
.+...+..+.|.+++..++++..++..++|. .+. + ..|.
T Consensus 319 ~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~ 398 (611)
T 1nr0_A 319 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGS 398 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSS
T ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCc
Confidence 0112233556666666666666666555553 110 0 0111
Q ss_pred --------------------------------------------------CceEEEEEcCCCc-EEEEECCCeEEEEcCC
Q 003217 420 --------------------------------------------------RRTEALTTSIDGM-IWTGGANGLLLQWDPN 448 (838)
Q Consensus 420 --------------------------------------------------~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~ 448 (838)
..+.+++++|||+ |++|+.|++|++||+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~ 478 (611)
T 1nr0_A 399 GVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLS 478 (611)
T ss_dssp SSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEE
T ss_pred cccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEcc
Confidence 2244566666665 5666677777777763
Q ss_pred C-Ce--eeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC--Cccccc--ccccccCEEEEEe--CCCEEEEEcCC
Q 003217 449 G-NR--LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGG--WVAHSSPVIKMAV--GAGYIFTLANH 517 (838)
Q Consensus 449 g-~~--l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~--g~~i~~--l~gH~~~V~sla~--dg~~l~S~S~D 517 (838)
+ +. +++ .+|...|+++++ +|++|++|+.|++|++||+. ++++.. +.+|...|+++++ ||++|+|+|.|
T Consensus 479 ~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D 557 (611)
T 1nr0_A 479 GASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD 557 (611)
T ss_dssp TTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECC
Confidence 3 21 233 456667776654 56677777777777777764 334332 3447777777663 56667777777
Q ss_pred CCeeeeecCCC
Q 003217 518 GGIRGWNVTSP 528 (838)
Q Consensus 518 gtIrlWdl~s~ 528 (838)
++||+|++..+
T Consensus 558 ~~v~lW~~~~~ 568 (611)
T 1nr0_A 558 NSVIVWNMNKP 568 (611)
T ss_dssp SCEEEEETTCT
T ss_pred CcEEEEECCCc
Confidence 77777776543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=307.68 Aligned_cols=292 Identities=18% Similarity=0.204 Sum_probs=217.9
Q ss_pred eeEEEEec--CCEEEEecCCCEEEEeCCCCccccccccccccCCCCC-CCCCCcee--eecCCCCeEEEEEcCCCCEEEE
Q 003217 134 FLRTIVCT--EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGE-DGTAPFKE--SVKGVSSVMCMVGDEASGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~--~~~g~~~V~~la~s~dg~~LaS 208 (838)
.+.+++.+ +..|.++.++++++|++.+...... +...... .....+.. ...+...|.|++|+|+|++|++
T Consensus 66 ~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVAR-----LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEE-----ECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred EEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEE-----ecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 34455554 5577778899999999976543211 0000000 00000000 0001345999999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeE
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~ 287 (838)
|+.||+|++||+.++ +....+.+|...|++++|+|+|+ |+||+.|++|++||+.+++....+..
T Consensus 141 ~~~d~~i~iwd~~~~--------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~------- 205 (393)
T 1erj_A 141 GAEDRLIRIWDIENR--------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI------- 205 (393)
T ss_dssp EETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-------
T ss_pred EcCCCeEEEEECCCC--------cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc-------
Confidence 999999999999987 67788999999999999999998 78999999999999977543322210
Q ss_pred EEEeeceeecccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcc
Q 003217 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (838)
Q Consensus 288 ~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (838)
...+..+++.+ ++..+++++ +++|++||+++++++..+.....
T Consensus 206 -----------------------~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~------------ 250 (393)
T 1erj_A 206 -----------------------EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE------------ 250 (393)
T ss_dssp -----------------------SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----------------
T ss_pred -----------------------CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccccc------------
Confidence 23466677766 667777776 68999999999887655421000
Q ss_pred cccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEE
Q 003217 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQ 444 (838)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrl 444 (838)
...+|...|.+++|+|+|. |++|+.|++|++
T Consensus 251 ------------------------------------------------~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 251 ------------------------------------------------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp --------------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ------------------------------------------------CCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 0123556678899999997 899999999999
Q ss_pred EcC-C------------CCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--
Q 003217 445 WDP-N------------GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV-- 506 (838)
Q Consensus 445 WD~-~------------g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~-- 506 (838)
||+ + +.+..++.+|...|.++++ ++++|++|+.|++|++||++ ++++..+.+|.+.|.++++
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecC
Confidence 998 3 3467788899999999876 68899999999999999987 7889999999999999985
Q ss_pred ------CCCEEEEEcCCCCeeeeecCCC
Q 003217 507 ------GAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 507 ------dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
++++++|||.|++||+|++...
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CcCcCCCCCEEEEECCCCcEEECccccc
Confidence 3578999999999999997643
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=304.75 Aligned_cols=285 Identities=15% Similarity=0.118 Sum_probs=206.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcE
Q 003217 191 VSSVMCMVGDEASGVVWSGHR------DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGI 264 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~------DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtI 264 (838)
...|.||+|+|||++|+||+. |++|++|+..++. ..........+|...|++|+|+|++++++++.||+|
T Consensus 42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~----~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v 117 (357)
T 4g56_B 42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGA----PNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAV 117 (357)
T ss_dssp CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC-------CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCE
T ss_pred cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCC----cceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEE
Confidence 778999999999999999998 7889999987762 112233455789999999999999999999999999
Q ss_pred EEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCcc
Q 003217 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (838)
Q Consensus 265 rvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~ 343 (838)
||||+.+++....... ...+| ...|.++++++++..+++++ +++|++||+++++
T Consensus 118 ~lWd~~~~~~~~~~~~---------------~~~~h----------~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~ 172 (357)
T 4g56_B 118 ELWEILEKESLLVNKF---------------AKYEH----------DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA 172 (357)
T ss_dssp EEC--------CCCCE---------------EECCC----------SSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE
T ss_pred EEeeccccceeEEEee---------------ccCCC----------CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence 9999976543211100 00112 45688999999999888887 6789999999999
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC------cc
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG------GF 415 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g------~~ 415 (838)
++..+..|...+..+.+++... ...+.+..++..++|. .+ .+
T Consensus 173 ~~~~~~~h~~~v~~v~~s~~~~------------------------------~~~~s~~~dg~v~~wd~~~~~~~~~~~~ 222 (357)
T 4g56_B 173 VLKSYNAHSSEVNCVAACPGKD------------------------------TIFLSCGEDGRILLWDTRKPKPATRIDF 222 (357)
T ss_dssp EEEEECCCSSCEEEEEECTTCS------------------------------SCEEEEETTSCEEECCTTSSSCBCBCCC
T ss_pred EEEEEcCCCCCEEEEEEccCCC------------------------------ceeeeeccCCceEEEECCCCceeeeeee
Confidence 9998887665444433332211 1234455555555553 11 12
Q ss_pred ccCCCceEEEEEcCCC-c-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cC-CEEEEEeeCCeEEEEeCC-C
Q 003217 416 GDDNRRTEALTTSIDG-M-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FG-SQIWVGYMNGIVQVLDLE-G 488 (838)
Q Consensus 416 ~~~~~~v~ala~S~dg-~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG-~~LasGs~DgtIrlWD~~-g 488 (838)
..+...+.+++++|++ . +++|+.|++|++||+ ++++++++.+|...|+++++ +| ++|++|+.|++|+|||++ +
T Consensus 223 ~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 223 CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS 302 (357)
T ss_dssp TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence 2355678899999874 3 788999999999999 78999999999999999976 55 589999999999999998 5
Q ss_pred cccccccccccCEEEEEe---CCCEEEEEcCCCCeeeeecCCCCCCchhh
Q 003217 489 NLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTSPGPLDSIL 535 (838)
Q Consensus 489 ~~i~~l~gH~~~V~sla~---dg~~l~S~S~DgtIrlWdl~s~~~~d~~~ 535 (838)
++++. .+|.+.|++|++ |+++|+|+|.|++|++|++.+......++
T Consensus 303 ~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~~i 351 (357)
T 4g56_B 303 EVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENLI 351 (357)
T ss_dssp EEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---------
T ss_pred cEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccccc
Confidence 55554 489999999985 57899999999999999997755544443
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-32 Score=296.33 Aligned_cols=270 Identities=18% Similarity=0.214 Sum_probs=212.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|.|++|+|++++|+||+.||+|++||+.++ +....+.+|...|.+++|+|+|+ |++|+.|++|++|++
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT--------NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--------CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--------CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 779999999999999999999999999999887 56778899999999999999998 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEe
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~ 349 (838)
.+.+..... .. .+.+| ...+.++.+.+++..+.++.+++|++||+.+++++.++.
T Consensus 127 ~~~~~~~~~------~~---------~~~~h----------~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 127 KTREGNVRV------SR---------ELAGH----------TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp TTCSBSCEE------EE---------EEECC----------SSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ccCCCccee------EE---------EecCC----------CccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEc
Confidence 764321110 00 01112 345667777665554444557899999999999988887
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--c----CccccCCCceE
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNRRTE 423 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~~v~ 423 (838)
+|...+..+ .+.+++...++|..++..++|. . ..+..|...|.
T Consensus 182 ~h~~~v~~~-------------------------------~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~ 230 (340)
T 1got_B 182 GHTGDVMSL-------------------------------SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN 230 (340)
T ss_dssp CCSSCEEEE-------------------------------EECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEE
T ss_pred CCCCceEEE-------------------------------EECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEE
Confidence 665433333 3333344455666666666654 1 23556888899
Q ss_pred EEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeec--CCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccccccc
Q 003217 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY--LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (838)
Q Consensus 424 ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~--H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~g 496 (838)
+++++|++. +++|+.|++|++||+ +++.+.++.. +...|.++++ +|++|++|+.|++|++||+. ++.+..+.+
T Consensus 231 ~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~ 310 (340)
T 1got_B 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeec
Confidence 999999987 899999999999999 6777777653 3357888865 68999999999999999986 778899999
Q ss_pred cccCEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 497 HSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 497 H~~~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
|.+.|.++++ ++++++|+|.|++|++||
T Consensus 311 h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999985 788999999999999997
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-31 Score=306.89 Aligned_cols=358 Identities=16% Similarity=0.180 Sum_probs=260.4
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+++|+.+ ++.|.+ +.|++|+|||.. ..... .+. .| .++|.||+|+|+|++|+||+
T Consensus 18 ~V~~~a~spdg~~las~~~d~~v~iWd~~-~~~~~-----------------~l~--gh-~~~V~~l~fspdg~~las~~ 76 (577)
T 2ymu_A 18 SVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ-----------------TLT--GH-SSSVWGVAFSPDGQTIASAS 76 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEE-----------------EEE--CC-SSCEEEEEECTTSSEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECC-CCEEE-----------------EEe--CC-CCCEEEEEECCCCCEEEEEe
Confidence 46667665 345555 568899999953 22111 122 23 78999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
.|++|++||..+ +.+..+.+|.++|++|+|+|||+ |++++.|+++++|+....... ...........+.
T Consensus 77 ~d~~i~vWd~~~---------~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 146 (577)
T 2ymu_A 77 DDKTVKLWNRNG---------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVA 146 (577)
T ss_dssp TTSCEEEEETTS---------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE-EECCCSSCEEEEE
T ss_pred CCCEEEEEECCC---------CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceee-eccCCCCceeeee
Confidence 999999999754 56788999999999999999998 789999999999997653211 1111111111111
Q ss_pred Eee------------ceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEE
Q 003217 290 VER------------SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIEN 356 (838)
Q Consensus 290 ~~~------------s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~ 356 (838)
... .....................+..++..+++..+++++ +++|++||. +++++..+..|...+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~ 225 (577)
T 2ymu_A 147 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVR 225 (577)
T ss_dssp ECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEE
T ss_pred eecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEE
Confidence 100 00000000000001112345678888888888888776 678999995 5778888888776666
Q ss_pred eeecccCccccc----ccceeeEEEecC--------CCCcceeeeeEeecCcceeeecCCcEEEEec-cC----ccccCC
Q 003217 357 RVDMSLLPDFAM----EDEFKTKIVTSS--------KKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-KG----GFGDDN 419 (838)
Q Consensus 357 ~~~~s~~~~~~~----~~~~~~~~~s~~--------~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~g----~~~~~~ 419 (838)
.+.+++.....+ +..++ ++... .....+..+.|.+++..++++..++..+++. .+ .+.+|.
T Consensus 226 ~~~~s~dg~~l~~~~~d~~i~--~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~ 303 (577)
T 2ymu_A 226 GVAFSPDGQTIASASDDKTVK--LWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 303 (577)
T ss_dssp EEEECTTSSCEEEEETTSCEE--EECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCS
T ss_pred EEEECCCCCEEEEEeCCCEEE--EEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCC
Confidence 666666543321 22233 22211 1233345677888888888888888777765 22 345688
Q ss_pred CceEEEEEcCCCc-EEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCCcccccccc
Q 003217 420 RRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVA 496 (838)
Q Consensus 420 ~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~g 496 (838)
..|.+++++|++. +++++.|++|++||.+++.+..+.+|...|.++++ +|++|++|+.|++|++||.+++++..+.+
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~ 383 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 383 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEEC
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecC
Confidence 8999999999987 78999999999999999899999999999999865 68899999999999999998999999999
Q ss_pred cccCEEEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 497 HSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 497 H~~~V~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
|...|.++++ |++++++++.|++|++|+.
T Consensus 384 ~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~ 414 (577)
T 2ymu_A 384 HSSSVRGVAFSPDGQTIASASDDKTVKLWNR 414 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 9999999985 7889999999999999995
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-31 Score=283.42 Aligned_cols=269 Identities=16% Similarity=0.156 Sum_probs=210.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..+|.|++|+|++++|+||+.||+|++||+.++ .....+++|..+|.+++|+|+++ |++||.|++||+||+
T Consensus 13 ~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ--------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--------ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 779999999999999999999999999999987 67788999999999999999998 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCc-cEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR-ELLKV 347 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg-~~l~~ 347 (838)
.+++....+. +| ...+.++++++++..+++++ |++|++||++++ .+..+
T Consensus 85 ~~~~~~~~~~-------------------~h----------~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~ 135 (304)
T 2ynn_A 85 NTGEKVVDFE-------------------AH----------PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (304)
T ss_dssp TTCCEEEEEE-------------------CC----------SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE
T ss_pred CCCcEEEEEe-------------------CC----------CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh
Confidence 8765433221 12 45688899998888888887 689999999987 44456
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccC------cc-ccCCC
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG------GF-GDDNR 420 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g------~~-~~~~~ 420 (838)
+.+|...+..+.+++. .+...++|..|+..++|... .+ ..+..
T Consensus 136 ~~~h~~~v~~v~~~p~------------------------------~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~ 185 (304)
T 2ynn_A 136 FEGHEHFVMCVAFNPK------------------------------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185 (304)
T ss_dssp ECCCCSCEEEEEECTT------------------------------CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTT
T ss_pred hcccCCcEEEEEECCC------------------------------CCCEEEEEeCCCeEEEEECCCCCccceeccCCcC
Confidence 6666554333333321 12334556666666665411 11 13445
Q ss_pred ceEEEEEcC--CCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Cccccc
Q 003217 421 RTEALTTSI--DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (838)
Q Consensus 421 ~v~ala~S~--dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~ 493 (838)
.+..+.+++ ++. |++|+.|++|++||+ +++++.++.+|...|.++++ ++++|++|+.||+|+|||++ ++++++
T Consensus 186 ~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~ 265 (304)
T 2ynn_A 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265 (304)
T ss_dssp CEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred cEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeee
Confidence 677788765 554 899999999999999 78999999999999998865 67899999999999999987 788999
Q ss_pred ccccccCEEEEEe--CCC--EEEEEcCCCCeeeeecCC
Q 003217 494 WVAHSSPVIKMAV--GAG--YIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 494 l~gH~~~V~sla~--dg~--~l~S~S~DgtIrlWdl~s 527 (838)
+.+|...|+++++ ++. ++++++. .++.+|++..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~asg~~-~g~~~~~~~~ 302 (304)
T 2ynn_A 266 LNVGLERSWCIATHPTGRKNYIASGFD-NGFTVLSLGN 302 (304)
T ss_dssp ECCSSSSEEEEEECTTCGGGCEEEEET-TEEEEEECC-
T ss_pred ccCCCccEEEEEECCCCCceEEEEecC-CceEEEEecc
Confidence 9999999999984 343 4666664 5577888653
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=285.61 Aligned_cols=285 Identities=12% Similarity=0.125 Sum_probs=200.1
Q ss_pred eeEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 003217 134 FLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (838)
Q Consensus 134 ~~~~l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~D 212 (838)
.+.+++.+.+.|.+ +.|++|++||+........ ..+....| ..+|.|++|+|++++|++|+.|
T Consensus 16 ~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~---------------~~~~~~~h-~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 16 KIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLI---------------DVLDETAH-KKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEECSSSCCEEE---------------EEECTTCC-CSCEEEEEECTTSSEEEEEETT
T ss_pred ceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEE---------------EEEecCCc-cCCEEEEEECCCCCEEEEEeCC
Confidence 56677777776655 5699999999965311000 00101113 7799999999999999999999
Q ss_pred CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEe
Q 003217 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (838)
Q Consensus 213 GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~ 291 (838)
++|++|++..... .....+....+.+|.++|++|+|+|+|+ |+|||.|++|++||+....... ....
T Consensus 80 ~~v~iw~~~~~~~-~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~------~~~~----- 147 (330)
T 2hes_X 80 STVSIWAKEESAD-RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY------ECIS----- 147 (330)
T ss_dssp SCEEEEEC--------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC------EEEE-----
T ss_pred CcEEEEEcccCcC-ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe------EEEE-----
Confidence 9999999864210 0011245667899999999999999998 7999999999999984321100 0000
Q ss_pred eceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCcc--EEEEEecCCceEEeeecccCccccc
Q 003217 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE--LLKVFNIDGQIENRVDMSLLPDFAM 368 (838)
Q Consensus 292 ~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~--~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (838)
.+.+| ...+.++++++++..|++++ |++|++||..++. ++.++
T Consensus 148 ----~~~~h----------~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~-------------------- 193 (330)
T 2hes_X 148 ----VLQEH----------SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL-------------------- 193 (330)
T ss_dssp ----EECCC----------SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE--------------------
T ss_pred ----EeccC----------CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc--------------------
Confidence 01122 45688899998888888887 6899999987652 22222
Q ss_pred ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCC--Cc-EEEEECCCeEEEE
Q 003217 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID--GM-IWTGGANGLLLQW 445 (838)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~d--g~-l~Sgs~DgtIrlW 445 (838)
.+|...|.+++|+|+ +. |++|+.|++|++|
T Consensus 194 -----------------------------------------------~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw 226 (330)
T 2hes_X 194 -----------------------------------------------NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226 (330)
T ss_dssp -----------------------------------------------CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred -----------------------------------------------cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence 233445667788887 54 8999999999999
Q ss_pred cC-CC--------CeeeEeec-CCccEEEEEEc-CCEEEEEeeCCeEEEEeCC-C--ccc-cccccccc-CEEEEEe---
Q 003217 446 DP-NG--------NRLQDFQY-LPFAVQCLCTF-GSQIWVGYMNGIVQVLDLE-G--NLL-GGWVAHSS-PVIKMAV--- 506 (838)
Q Consensus 446 D~-~g--------~~l~tl~~-H~~~V~sls~d-G~~LasGs~DgtIrlWD~~-g--~~i-~~l~gH~~-~V~sla~--- 506 (838)
|+ .+ .++..+.+ |...|+++++. +.+|++|+.||+|+|||.. + +++ ..+.+|.. .|.++++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~ 306 (330)
T 2hes_X 227 KYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLEL 306 (330)
T ss_dssp EEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC--
T ss_pred EecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecC
Confidence 98 33 45566665 99999999874 5689999999999999986 4 233 34578987 8999985
Q ss_pred -CCCEEEEEcCCCCeeeeecCC
Q 003217 507 -GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 507 -dg~~l~S~S~DgtIrlWdl~s 527 (838)
++++|+|+|.|++|++|++..
T Consensus 307 ~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 307 NGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ---CCEEEEETTSEEEEEEC--
T ss_pred CCceEEEEecCCCcEEEEEecc
Confidence 467899999999999999754
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=288.73 Aligned_cols=274 Identities=16% Similarity=0.211 Sum_probs=213.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|+|++|+|++++|+||+.||+|++||..++ +....+..|...|.+++|+|+|. |++|+.|++|++|++
T Consensus 64 ~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~--------~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~ 135 (354)
T 2pbi_B 64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT--------NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--------CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence 789999999999999999999999999999886 56677888999999999999998 789999999999998
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
......... . .... +. .+...+.++.+.+++..+++++ |++|++||+.+++++.++
T Consensus 136 ~~~~~~~~~--~--~~~~---------~~----------~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 136 TFDKNENMA--A--KKKS---------VA----------MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp CCCTTCCSG--G--GCEE---------EE----------ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ecccccccc--c--ccee---------ee----------ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 542110000 0 0000 01 1245678888888888887776 689999999999999999
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC----ccccCCCce
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRT 422 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v 422 (838)
.+|...+..+.+.+.. .+...++|..++..++|. .+ .+..|...|
T Consensus 193 ~~h~~~v~~~~~~~~~-----------------------------~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v 243 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSE-----------------------------TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDV 243 (354)
T ss_dssp ECCSSCEEEEEECCCS-----------------------------SCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred cCCCCCeEEEEEEeCC-----------------------------CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCe
Confidence 8776543333332211 122345566666555554 11 345678889
Q ss_pred EEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecC--CccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Cccccccc
Q 003217 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL--PFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (838)
Q Consensus 423 ~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H--~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (838)
.+++++|++. +++|+.|++|++||+ .++++..+..+ ...+.++++ +|++|++|+.|++|+|||+. ++.+..+.
T Consensus 244 ~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~ 323 (354)
T 2pbi_B 244 NSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF 323 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE
Confidence 9999999987 899999999999999 56677666543 346777765 68999999999999999985 78889999
Q ss_pred ccccCEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 496 AHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 496 gH~~~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
+|.+.|.++++ |+++|+|+|.|++|++|+
T Consensus 324 ~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 324 GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999985 788999999999999996
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-30 Score=292.74 Aligned_cols=286 Identities=15% Similarity=0.173 Sum_probs=217.8
Q ss_pred ceeEEEEecC--CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE
Q 003217 133 CFLRTIVCTE--EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (838)
Q Consensus 133 ~~~~~l~~~~--~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG 209 (838)
..+.+++.+. ..|.+ +.|++|+|||+.+...... + ..| ..+|.|++|+|++++|+||
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~-----------------l--~~h-~~~V~~v~~~~~~~~l~sg 168 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT-----------------L--KGH-TDSVQDISFDHSGKLLASC 168 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE-----------------E--CCC-SSCEEEEEECTTSSEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-----------------E--ecc-CCcEEEEEEcCCCCEEEEE
Confidence 3566777653 35555 5699999999976543211 1 123 7899999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEE
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~ 288 (838)
+.||+|++||+.++ +.+.++.+|...|++++|+|+|. |+|||.|++|++||+.++.....+.
T Consensus 169 s~D~~i~iwd~~~~--------~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~--------- 231 (410)
T 1vyh_C 169 SADMTIKLWDFQGF--------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT--------- 231 (410)
T ss_dssp ETTSCCCEEETTSS--------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE---------
T ss_pred eCCCeEEEEeCCCC--------ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe---------
Confidence 99999999999886 67788999999999999999998 7899999999999997754332221
Q ss_pred EEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccc
Q 003217 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
+| ...+.++...+++..+++++ |++|++||+.++++...+..|...+..+.+++.....
T Consensus 232 ----------~h----------~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 291 (410)
T 1vyh_C 232 ----------GH----------REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYS 291 (410)
T ss_dssp ----------CC----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGG
T ss_pred ----------CC----------CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCccccc
Confidence 12 34577788888888888877 6899999999999999998887766666666543221
Q ss_pred cccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC----ccccCCCceEEEEEcCCCc-EEEEECCC
Q 003217 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGM-IWTGGANG 440 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~ala~S~dg~-l~Sgs~Dg 440 (838)
..... ... . .......+..+++|+.++..++|. .+ .+.+|...|.+++++|+|. |++|+.|+
T Consensus 292 ~~~~~-----~~~---~---~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~ 360 (410)
T 1vyh_C 292 SISEA-----TGS---E---TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360 (410)
T ss_dssp GGGGC-----CSC---C----------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred chhhh-----ccc---c---ccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 10000 000 0 001111234567788888777775 22 3556888999999999987 89999999
Q ss_pred eEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeC
Q 003217 441 LLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL 486 (838)
Q Consensus 441 tIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~ 486 (838)
+|++||. ++++++++.+|...|+++++ ++.+|++|+.|++|++||.
T Consensus 361 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred eEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999999 78999999999999999976 6789999999999999986
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=298.96 Aligned_cols=282 Identities=16% Similarity=0.212 Sum_probs=207.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|+|++|+|++++|+||+.||+|++||+.++ +....+.+|...|.+++|+|+|+ |++|+.|++|++|++
T Consensus 66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~--------~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS--------QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEETTTT--------EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence 789999999999999999999999999999987 67788999999999999999998 789999999999998
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC-CCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
.+....-...... ..+.+| ...+..+.+.+. +..+++++ |++|++||+.+++++.+
T Consensus 138 ~~~~~~~~~~~~~------------~~~~gh----------~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 138 SSQADRDGNMPVS------------RVLTGH----------KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp CCCSSCCCSSTTC------------CBCCCC----------SSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred CCCccccCCccce------------eeccCC----------CcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence 6532100000000 001122 222333444443 34566665 68999999999999877
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEee-cCcceeeecCCcEEEEecc-------CccccCC
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAADAVRRVAAK-------GGFGDDN 419 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~-~~~~~~~g~~~~v~~v~~~-------g~~~~~~ 419 (838)
+...... .+...+.++.+.+ ++...++|+.|+..++|.. ..+.+|.
T Consensus 196 ~~~~~~~--------------------------~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~ 249 (380)
T 3iz6_a 196 FGSEFPS--------------------------GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE 249 (380)
T ss_dssp ECCCSSS--------------------------SCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS
T ss_pred eecccCC--------------------------CCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC
Confidence 7321000 0000111222222 2334566777777777651 1345688
Q ss_pred CceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCc-------cEEEEEE--cCCEEEEEeeCCeEEEEeCC-
Q 003217 420 RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF-------AVQCLCT--FGSQIWVGYMNGIVQVLDLE- 487 (838)
Q Consensus 420 ~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~-------~V~sls~--dG~~LasGs~DgtIrlWD~~- 487 (838)
..|.+++++|+|. +++|+.|++|++||+ ++++++.+..|.. .|+++++ +|++|++|+.||+|++||+.
T Consensus 250 ~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~ 329 (380)
T 3iz6_a 250 GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL 329 (380)
T ss_dssp SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT
T ss_pred CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCC
Confidence 8999999999987 899999999999999 7888888876432 3677654 79999999999999999986
Q ss_pred Ccccccc----cccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCC
Q 003217 488 GNLLGGW----VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 488 g~~i~~l----~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
++.+..+ .+|.+.|.++++ +|++|+|||.|++|++|++...
T Consensus 330 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 330 AEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred CceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 6655554 789999999884 7889999999999999998653
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.98 E-value=2.8e-30 Score=278.84 Aligned_cols=268 Identities=21% Similarity=0.243 Sum_probs=212.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..+|.|++|+|++++|++|+.||+|++|++.++ +....+.+|...|++++|+|+|+ |++|+.|++|++||+
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--------KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc--------ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 789999999999999999999999999999886 56778899999999999999998 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
.+.+....+. +| ...+.++.+.+++..+++++ +++|++||+++++++..+
T Consensus 95 ~~~~~~~~~~-------------------~~----------~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 145 (312)
T 4ery_A 95 SSGKCLKTLK-------------------GH----------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145 (312)
T ss_dssp TTCCEEEEEE-------------------CC----------SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CCCcEEEEEc-------------------CC----------CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe
Confidence 7654322211 12 34577888888888888877 679999999999998888
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc--Cc----c-ccCCCc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--GG----F-GDDNRR 421 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g~----~-~~~~~~ 421 (838)
..|...+..+ .+.+++...+++..++..+++.. +. + ..+...
T Consensus 146 ~~~~~~v~~~-------------------------------~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 194 (312)
T 4ery_A 146 PAHSDPVSAV-------------------------------HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194 (312)
T ss_dssp CCCSSCEEEE-------------------------------EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCC
T ss_pred cCCCCcEEEE-------------------------------EEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCc
Confidence 7655433222 23333344455566665555541 11 1 234557
Q ss_pred eEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEE----E-EcCCEEEEEeeCCeEEEEeCC-Cccccc
Q 003217 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL----C-TFGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sl----s-~dG~~LasGs~DgtIrlWD~~-g~~i~~ 493 (838)
+..++++|++. +++++.|++|++||+ ++++++.+.+|...+.++ . .++.+|++|+.||+|++||+. ++++..
T Consensus 195 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 274 (312)
T 4ery_A 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274 (312)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEE
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhh
Confidence 88899999987 789999999999999 789999999987754432 2 357899999999999999997 678999
Q ss_pred ccccccCEEEEEe--CCCEEEEEc--CCCCeeeeecC
Q 003217 494 WVAHSSPVIKMAV--GAGYIFTLA--NHGGIRGWNVT 526 (838)
Q Consensus 494 l~gH~~~V~sla~--dg~~l~S~S--~DgtIrlWdl~ 526 (838)
+.+|.+.|.++++ ++..+++++ .|++|++|+..
T Consensus 275 ~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred hhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999999985 677899886 69999999853
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-30 Score=284.84 Aligned_cols=275 Identities=15% Similarity=0.154 Sum_probs=204.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCccee-EEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEV-LSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~-~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
+.|.+++|+|+|++|+||+.|++||+||+.++. .... ....+|.+.|++|+|+|+|+ |+|||.|++|+||++
T Consensus 17 ~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~------~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~ 90 (345)
T 3fm0_A 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDS------WICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK 90 (345)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEEEETTE------EEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCc------ceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEc
Confidence 389999999999999999999999999998751 0111 22479999999999999998 789999999999998
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCcc---EE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE---LL 345 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~---~l 345 (838)
.+..... .. .+.+| ...|.++++++++..+++++ |++|++||+.++. ++
T Consensus 91 ~~~~~~~--------~~---------~~~~h----------~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 143 (345)
T 3fm0_A 91 NQDDFEC--------VT---------TLEGH----------ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV 143 (345)
T ss_dssp CCC-EEE--------EE---------EECCC----------SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEE
T ss_pred cCCCeEE--------EE---------EccCC----------CCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEE
Confidence 6532110 00 11222 45688899999999998887 6899999998764 34
Q ss_pred EEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--c------Ccccc
Q 003217 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K------GGFGD 417 (838)
Q Consensus 346 ~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~------g~~~~ 417 (838)
..+..|...+.. +.+.+++..++++..++..+++. . ..+.+
T Consensus 144 ~~~~~h~~~v~~-------------------------------~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~ 192 (345)
T 3fm0_A 144 SVLNSHTQDVKH-------------------------------VVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEG 192 (345)
T ss_dssp EEECCCCSCEEE-------------------------------EEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECC
T ss_pred EEecCcCCCeEE-------------------------------EEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecC
Confidence 445444433222 33444444555666665555543 1 23557
Q ss_pred CCCceEEEEEcCCCc-EEEEECCCeEEEEcC-C-C--------------CeeeEeec-CCccEEEEEE--cCCEEEEEee
Q 003217 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-N-G--------------NRLQDFQY-LPFAVQCLCT--FGSQIWVGYM 477 (838)
Q Consensus 418 ~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~-g--------------~~l~tl~~-H~~~V~sls~--dG~~LasGs~ 477 (838)
|...|.+++|+|+|. |++|+.|++|++||. . + +++.++.+ |...|+++++ ++..|++|+.
T Consensus 193 h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~ 272 (345)
T 3fm0_A 193 HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG 272 (345)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET
T ss_pred CCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC
Confidence 888999999999997 899999999999986 2 1 34556665 8899999976 5789999999
Q ss_pred CCeEEEEeCCC-c---------ccccccccccCEEEEEeC--C-CEEEEEcCCCCeeeeecCCCCC
Q 003217 478 NGIVQVLDLEG-N---------LLGGWVAHSSPVIKMAVG--A-GYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 478 DgtIrlWD~~g-~---------~i~~l~gH~~~V~sla~d--g-~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
|++|++||... . ....+.+|.+.|++|++. + ..++|+|.|++|++|++....+
T Consensus 273 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 273 DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 99999999752 1 123456899999999964 3 4899999999999999876544
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-30 Score=284.40 Aligned_cols=239 Identities=17% Similarity=0.221 Sum_probs=194.9
Q ss_pred CCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEE
Q 003217 191 VSSVMCMVGDEA----SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~d----g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIr 265 (838)
..+|.||+|+|+ +++|+||+.|++||+|++.++. ......+.||..+|++++|++++. ++|||.|++||
T Consensus 32 ~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~------~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER------LDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp SSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC------eeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 789999999874 6799999999999999997752 123456899999999999999998 68999999999
Q ss_pred EEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccE
Q 003217 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (838)
Q Consensus 266 vWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~ 344 (838)
+||+.+++....+.. + ...+..+++++++..+++++ +++|++||+.+++.
T Consensus 106 lWd~~~~~~~~~~~~-------------------~----------~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~ 156 (321)
T 3ow8_A 106 LWDLENGKQIKSIDA-------------------G----------PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 156 (321)
T ss_dssp EEETTTTEEEEEEEC-------------------C----------TTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE
T ss_pred EEECCCCCEEEEEeC-------------------C----------CccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce
Confidence 999977543222211 1 23455677888888888887 57899999998776
Q ss_pred EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEE
Q 003217 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (838)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (838)
...+.. +...+.+
T Consensus 157 ~~~~~~-------------------------------------------------------------------~~~~v~~ 169 (321)
T 3ow8_A 157 EYSLDT-------------------------------------------------------------------RGKFILS 169 (321)
T ss_dssp EEEEEC-------------------------------------------------------------------SSSCEEE
T ss_pred eEEecC-------------------------------------------------------------------CCceEEE
Confidence 443321 1123557
Q ss_pred EEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Cccccccccccc
Q 003217 425 LTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS 499 (838)
Q Consensus 425 la~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~ 499 (838)
++++|+|. |++|+.|++|++||+ ++++++++.+|..+|+++++ +|++|++|+.|++|+|||+. ++++..+.+|..
T Consensus 170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~ 249 (321)
T 3ow8_A 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC
Confidence 88999987 789999999999999 78999999999999999876 68899999999999999987 678899999999
Q ss_pred CEEEEEe--CCCEEEEEcCCCCeeeeecCCCCCC
Q 003217 500 PVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPL 531 (838)
Q Consensus 500 ~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~~ 531 (838)
.|.++++ ++++++|++.|++|++||+.+..++
T Consensus 250 ~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV 283 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE
Confidence 9999985 7889999999999999998765443
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.2e-30 Score=279.23 Aligned_cols=277 Identities=18% Similarity=0.206 Sum_probs=206.3
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
.++|.+++|+|++ ++|+||+.|++|++|++.+.. .........+++|..+|++++|+|+|+ |+|||.|++|||||
T Consensus 17 ~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~---~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd 93 (319)
T 3frx_A 17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDD---QKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD 93 (319)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEET---TEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cceEEEEEccCCCccEEEEecCCccEEEecCCCCC---ccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 8899999999965 899999999999999987531 000124567899999999999999998 78999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
+.+++....+. +| ...+.++++++++..+++++ |++|++||++ ++++.+
T Consensus 94 ~~~~~~~~~~~-------------------~h----------~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~ 143 (319)
T 3frx_A 94 VATGETYQRFV-------------------GH----------KSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLAT 143 (319)
T ss_dssp TTTTEEEEEEE-------------------CC----------SSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEE
T ss_pred CCCCCeeEEEc-------------------cC----------CCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEE
Confidence 97754322221 12 45688888888888888887 6799999996 556677
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc------CccccCCCc
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRR 421 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~------g~~~~~~~~ 421 (838)
+.+|...+..+.+.+.... ...+..++.+..++..++|.. ..+.+|...
T Consensus 144 ~~~h~~~v~~~~~~~~~~~-------------------------~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~ 198 (319)
T 3frx_A 144 LLGHNDWVSQVRVVPNEKA-------------------------DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 198 (319)
T ss_dssp ECCCSSCEEEEEECCC-------------------------------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSC
T ss_pred EeccCCcEEEEEEccCCCC-------------------------CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCc
Confidence 7666554433333321110 001123455666666666541 235578889
Q ss_pred eEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCC-ccccc---
Q 003217 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG-NLLGG--- 493 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g-~~i~~--- 493 (838)
|.+++++|+|. |++|+.|++|++||+ +++++.++..| ..|.++++ +|.+|++++ +..|++|+++. .++..
T Consensus 199 v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~~~~ 276 (319)
T 3frx_A 199 INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLRP 276 (319)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEE-TTEEEEEEETTEEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEc-CCCcEEEEeCcCeeeeccCc
Confidence 99999999997 789999999999999 68888888764 57888865 677888876 55699999874 33332
Q ss_pred -----ccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 494 -----WVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 494 -----l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
..+|...|.++++ ||++|++++.|++|++|++.+
T Consensus 277 ~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 2356788999884 889999999999999999864
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=277.24 Aligned_cols=267 Identities=17% Similarity=0.179 Sum_probs=191.4
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCce-eeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003217 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFK-ESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (838)
Q Consensus 142 ~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd 219 (838)
+..|.+ +.|++||+||+.+...... ...+.. ...| ..+|.+++|+|++.+|+||+.|++||+||
T Consensus 39 ~~~l~sgs~D~~v~iWd~~~~~~~~~-------------~~~~~~~l~~h-~~~V~~~~~~~~~~~l~s~s~D~~v~lwd 104 (343)
T 2xzm_R 39 SPVLISGSRDKTVMIWKLYEEEQNGY-------------FGIPHKALTGH-NHFVSDLALSQENCFAISSSWDKTLRLWD 104 (343)
T ss_dssp CCEEEEEETTSCEEEEEECSSCCSSB-------------SEEEEEEECCC-SSCEEEEEECSSTTEEEEEETTSEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCcCCcccc-------------cccccchhccC-CCceEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 345655 5699999999865321110 000111 1123 78999999999999999999999999999
Q ss_pred CCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecc
Q 003217 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (838)
Q Consensus 220 ~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 298 (838)
+.++ +....+.+|.+.|++++|+|+|+ |+||+.|++|++||+... .........
T Consensus 105 ~~~~--------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~---------------- 159 (343)
T 2xzm_R 105 LRTG--------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKE---------------- 159 (343)
T ss_dssp TTSS--------CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTT----------------
T ss_pred CCCC--------cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeeccc----------------
Confidence 9987 67788999999999999999998 789999999999998632 111111000
Q ss_pred cceeccceeeeecCCeEEEEEcCCC----------CEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccc
Q 003217 299 SHLSVNGFSSILTSDIKNLLSDHSR----------AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 299 ~~~~~~~~~~~~s~~v~~las~~~~----------~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
+| ...+.++++++.+ ..+++++ +++|++||. +++++.++.
T Consensus 160 ~~----------~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~------------------ 210 (343)
T 2xzm_R 160 NH----------SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK------------------ 210 (343)
T ss_dssp SC----------SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE------------------
T ss_pred CC----------CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc------------------
Confidence 01 2345566665543 4666666 678999994 333322221
Q ss_pred cccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEc
Q 003217 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWD 446 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD 446 (838)
.|...|.+++++|+|. |++|+.|++|++||
T Consensus 211 -------------------------------------------------~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd 241 (343)
T 2xzm_R 211 -------------------------------------------------AHESNVNHLSISPNGKYIATGGKDKKLLIWD 241 (343)
T ss_dssp -------------------------------------------------CCSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred -------------------------------------------------CccccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence 2334567889999987 89999999999999
Q ss_pred C-CC-CeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccc--cc-----------cccccCEEEEEe--
Q 003217 447 P-NG-NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLG--GW-----------VAHSSPVIKMAV-- 506 (838)
Q Consensus 447 ~-~g-~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~--~l-----------~gH~~~V~sla~-- 506 (838)
+ +. .....+ .+...|.++++ ++.+++ ++.|++|++||+. ++... .+ .+|...|.++++
T Consensus 242 ~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 319 (343)
T 2xzm_R 242 ILNLTYPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA 319 (343)
T ss_dssp SSCCSSCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS
T ss_pred CCCCcccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC
Confidence 9 54 344444 35667998876 566665 4568899999986 33322 33 379999999985
Q ss_pred CCCEEEEEcCCCCeeeeecCC
Q 003217 507 GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 507 dg~~l~S~S~DgtIrlWdl~s 527 (838)
+|++|++|+.||+||+|++.+
T Consensus 320 ~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 320 LGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp SSCCEEEEETTSEEEEEEEEE
T ss_pred CCCeEEEecCCceEEEEEEEc
Confidence 688999999999999999754
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=314.11 Aligned_cols=380 Identities=11% Similarity=0.079 Sum_probs=250.4
Q ss_pred CCCcCcccccCCCcccccCcccccCCCCCCCceeecCCCCCccccCceeEEEEecCC-EEEE-ecCCCEEEEeCCCCccc
Q 003217 87 SSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEE-QLWA-GGENGLRVWNLKELYDE 164 (838)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~-g~d~~vrvWd~~~~~~~ 164 (838)
+.+..++|+.|+.+|. |+-+-.. ....+...+| ...++.++...+ .|.+ +.|++|+|||+.+....
T Consensus 25 fspdg~~lAsgs~Dg~----I~lw~~~-~~~~~~~~~~-------~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~ 92 (902)
T 2oaj_A 25 FDFTQNLLAIATVTGE----VHIYGQQ-QVEVVIKLED-------RSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVL 92 (902)
T ss_dssp EETTTTEEEEEETTSE----EEEECST-TCEEEEECSS-------CCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEE
T ss_pred ECCCCCEEEEEeCCCE----EEEEeCC-CcEEEEEcCC-------CCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEE
Confidence 4667788988888775 3333211 1111222122 235677776544 4555 56999999999764432
Q ss_pred cccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCccee----------
Q 003217 165 SESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEV---------- 234 (838)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~---------- 234 (838)
.. + .+ .+.|.|++|+|++++|++|+.||+|++||+.++ +..
T Consensus 93 ~~-----------------~---~~-~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~--------~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 93 TT-----------------V---FV-PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD--------QLSSFKLDNLQKS 143 (902)
T ss_dssp EE-----------------E---EC-SSCEEEEECCTTCSEEEEEETTSCEEEEETTTT--------EEEEEEECCHHHH
T ss_pred EE-----------------E---cC-CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC--------ccccceecccccc
Confidence 11 1 13 568999999999999999999999999999886 221
Q ss_pred -EEeccccccEEEEEEecCC--CEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccc-----e
Q 003217 235 -LSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG-----F 306 (838)
Q Consensus 235 -~~l~gH~~~V~slafs~dG--~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~-----~ 306 (838)
..+++|.++|++|+|+|++ .|++|+.|++| +||+.+.+....+..+.. .+...+ .
T Consensus 144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~----------------~g~~~~~~~~~~ 206 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELP----------------PFAPGGDFSEKT 206 (902)
T ss_dssp HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBC----------------TTCCCSTTCCCT
T ss_pred ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccC----------------CcCCCccccccc
Confidence 2357899999999999974 38899999999 999987543322221100 000000 0
Q ss_pred eeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE--Ee---cC-------------CceEEeeeccc----C
Q 003217 307 SSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV--FN---ID-------------GQIENRVDMSL----L 363 (838)
Q Consensus 307 ~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~--l~---~~-------------~~~~~~~~~s~----~ 363 (838)
...+...+.++++++++..+++++ |++|++||+++++++.. +. .+ ...+..+.+++ .
T Consensus 207 ~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd 286 (902)
T 2oaj_A 207 NEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPE 286 (902)
T ss_dssp TSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTT
T ss_pred ccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCC
Confidence 001135688999999999898887 67999999999988654 21 11 11122222210 0
Q ss_pred c-----cccc----------------------------------------------------------------------
Q 003217 364 P-----DFAM---------------------------------------------------------------------- 368 (838)
Q Consensus 364 ~-----~~~~---------------------------------------------------------------------- 368 (838)
. ..+.
T Consensus 287 ~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~ 366 (902)
T 2oaj_A 287 YTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGL 366 (902)
T ss_dssp EEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSE
T ss_pred CCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCcee
Confidence 0 0000
Q ss_pred ------ccceeeEEEecCC---C-----------Cccee----------------------------------eeeEeec
Q 003217 369 ------EDEFKTKIVTSSK---K-----------DKAQS----------------------------------SFGFFQR 394 (838)
Q Consensus 369 ------~~~~~~~~~s~~~---~-----------~~~~~----------------------------------s~~~~~~ 394 (838)
+.+++++.+.... + ...+. ++.|++.
T Consensus 367 l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd 446 (902)
T 2oaj_A 367 ILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY 446 (902)
T ss_dssp EEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE
T ss_pred EEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc
Confidence 0011111100000 0 00000 1223444
Q ss_pred CcceeeecCCcEEEEec--cCccc---------------cCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CC------
Q 003217 395 SRNAIMGAADAVRRVAA--KGGFG---------------DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG------ 449 (838)
Q Consensus 395 ~~~~~~g~~~~v~~v~~--~g~~~---------------~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g------ 449 (838)
+..+++|+.|+..++|. .+.+. +|...|.+|+|+|||+ |++|+.||+|+|||+ ++
T Consensus 447 g~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~ 526 (902)
T 2oaj_A 447 GTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVE 526 (902)
T ss_dssp EEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC----
T ss_pred CcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCcc
Confidence 55677888888888886 22221 4667899999999998 799999999999998 44
Q ss_pred ---------------------------------------CeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCC
Q 003217 450 ---------------------------------------NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG 488 (838)
Q Consensus 450 ---------------------------------------~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g 488 (838)
+++.++.+|.++|++|++ || +||+|+.|++|+|||+++
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 527 NRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG 605 (902)
T ss_dssp -----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT
T ss_pred ccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC
Confidence 247788899999999865 78 999999999999999885
Q ss_pred c-cc-----cccc-ccccCEEEEEeC----------CCEEEEEcCCCCeeeeec
Q 003217 489 N-LL-----GGWV-AHSSPVIKMAVG----------AGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 489 ~-~i-----~~l~-gH~~~V~sla~d----------g~~l~S~S~DgtIrlWdl 525 (838)
. ++ +.+. +|++.|++|++. +++|+||+.|++||+||+
T Consensus 606 ~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 606 PAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp TEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred CeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 4 22 4565 999999999865 358999999999999998
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-28 Score=313.36 Aligned_cols=368 Identities=13% Similarity=0.136 Sum_probs=221.3
Q ss_pred ceeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE
Q 003217 133 CFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (838)
Q Consensus 133 ~~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG 209 (838)
..+.+++.+ +..|.+ +.|++|++||+.+...... + ..| .++|.|++|+|+|++|++|
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~-----------------~--~~h-~~~v~~~~~s~~~~~l~s~ 675 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD-----------------I--KAH-EDEVLCCAFSSDDSYIATC 675 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-----------------E--CCC-SSCEEEEEECTTSSEEEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE-----------------e--ccC-CCCEEEEEEecCCCEEEEE
Confidence 345566655 445555 5689999999976543221 1 123 7899999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC---EEEeeCCCcEEEEECCCcceeeecCCCceeee
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~---L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~ 286 (838)
+.||+|++||+.++ +....+.+|.++|++++|+|++. +++|+.|++|++||+.++.....+..+.....
T Consensus 676 ~~d~~v~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~ 747 (1249)
T 3sfz_A 676 SADKKVKIWDSATG--------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN 747 (1249)
T ss_dssp ETTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEE
T ss_pred eCCCeEEEEECCCC--------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEE
Confidence 99999999999997 67888999999999999999653 68999999999999987654433333222222
Q ss_pred EEEE------------eec--eeeccccee-----------------------cccee----------------------
Q 003217 287 ALIV------------ERS--YIDLRSHLS-----------------------VNGFS---------------------- 307 (838)
Q Consensus 287 ~~~~------------~~s--~~~l~~~~~-----------------------~~~~~---------------------- 307 (838)
.+.. ++. +++++.... ...+.
T Consensus 748 ~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~ 827 (1249)
T 3sfz_A 748 HCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 827 (1249)
T ss_dssp EEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETT
T ss_pred EEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 2211 111 122211100 00000
Q ss_pred ---------eeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccccc----cccee
Q 003217 308 ---------SILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM----EDEFK 373 (838)
Q Consensus 308 ---------~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~----~~~~~ 373 (838)
..+...+.++++++++..+++++ +++|++||+.++..+..+.+|...+..+.+++.....+ +..++
T Consensus 828 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~ 907 (1249)
T 3sfz_A 828 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIR 907 (1249)
T ss_dssp TCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEE
Confidence 01234566778888888888776 57899999999999999888877666666666433211 22222
Q ss_pred eEEEecC--------------------------------------C------CCcceeeeeEeecCcceeeecCCcEEEE
Q 003217 374 TKIVTSS--------------------------------------K------KDKAQSSFGFFQRSRNAIMGAADAVRRV 409 (838)
Q Consensus 374 ~~~~s~~--------------------------------------~------~~~~~~s~~~~~~~~~~~~g~~~~v~~v 409 (838)
+|..... . ......++.+.+.+..+++|..++..++
T Consensus 908 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i 987 (1249)
T 3sfz_A 908 VWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKI 987 (1249)
T ss_dssp EEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEE
T ss_pred EEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEE
Confidence 2211000 0 0011223344445555555555554444
Q ss_pred ec--c----CccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc-CCEEEEEeeCCe
Q 003217 410 AA--K----GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF-GSQIWVGYMNGI 480 (838)
Q Consensus 410 ~~--~----g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d-G~~LasGs~Dgt 480 (838)
+. . ..+..|...|.+++++|+|. +++|+.|++|++||+ +++++ .+..|...|.++++. +..+++++.|++
T Consensus 988 ~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~~l~~~~~dg~ 1066 (1249)
T 3sfz_A 988 IELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLLSWSFDGT 1066 (1249)
T ss_dssp EETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSSEEEEEESSSE
T ss_pred EEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCCcEEEEECCCc
Confidence 33 1 12334555566666666654 556666666666666 33333 344556666665542 335555566666
Q ss_pred EEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecCCCC
Q 003217 481 VQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 481 IrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s~~ 529 (838)
|++||+. ++++..+.+|.+.|.+++ ++++++++++.|++|++||+.+..
T Consensus 1067 v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~ 1118 (1249)
T 3sfz_A 1067 VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS 1118 (1249)
T ss_dssp EEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS
T ss_pred EEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc
Confidence 6666654 455555666666665554 355566666666666666654433
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-29 Score=267.91 Aligned_cols=276 Identities=19% Similarity=0.209 Sum_probs=195.8
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
.++|+||+|+|+ +++|+|||.||+||+||+.++. .........+++|..+|++++|+|+|+ |++|+.|+.|++|+
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~---~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE---TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSS---SCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC---cccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence 889999999997 5899999999999999998752 111234567899999999999999998 78999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
............ ....+......+.+..+++++ ++.+++||+........
T Consensus 115 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~ 165 (340)
T 4aow_A 115 LTTGTTTRRFVG-----------------------------HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 165 (340)
T ss_dssp TTTTEEEEEEEC-----------------------------CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred ecccceeeeecC-----------------------------CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEE
Confidence 866432211110 022344555566677777766 67899999987654322
Q ss_pred -EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--c----CccccCCC
Q 003217 348 -FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNR 420 (838)
Q Consensus 348 -l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~ 420 (838)
+..+......+.++.... ....+.+..++..+++. . ..+..|..
T Consensus 166 ~~~~~~~~v~~~~~~~~~~-----------------------------~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~ 216 (340)
T 4aow_A 166 QDESHSEWVSCVRFSPNSS-----------------------------NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 216 (340)
T ss_dssp CSSSCSSCEEEEEECSCSS-----------------------------SCEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred EeccccCcccceEEccCCC-----------------------------CcEEEEEcCCCEEEEEECCCCceeeEecCCCC
Confidence 222222222222111100 11223444455444443 1 13456788
Q ss_pred ceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEc-CCEEEEEeeCCeEEEEeCCC-ccc-----
Q 003217 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF-GSQIWVGYMNGIVQVLDLEG-NLL----- 491 (838)
Q Consensus 421 ~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~d-G~~LasGs~DgtIrlWD~~g-~~i----- 491 (838)
.|.+++++|++. |++|+.|++|++||+ +++++..+..| ..|.++++. +.++++++.|++|+|||+++ .++
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 295 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQ 295 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccc
Confidence 899999999987 789999999999999 67888888754 578888763 45677778899999999874 332
Q ss_pred ----ccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCC
Q 003217 492 ----GGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 492 ----~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
....+|...|++|++ |+++|+||+.||+||+||+.++
T Consensus 296 ~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 296 EVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp C-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred cceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 234589999999985 7889999999999999999874
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=283.05 Aligned_cols=306 Identities=13% Similarity=0.146 Sum_probs=219.2
Q ss_pred cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCC
Q 003217 149 GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSD 228 (838)
Q Consensus 149 ~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~ 228 (838)
.|+.|+|||+.+...... .....+ ..+|.|++|+|++++|++|+.||+|++|++.+..
T Consensus 43 ~d~~v~iw~~~~~~~~~~-----------------~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~---- 100 (416)
T 2pm9_A 43 TDSSLELWSLLAADSEKP-----------------IASLQV-DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN---- 100 (416)
T ss_dssp CCCCCEEEESSSGGGCSC-----------------SCCCCC-SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTT----
T ss_pred CCCeEEEEEccCCCCCcE-----------------EEEEec-CCceEEEEECCCCCeEEEEccCCeEEEeeccccc----
Confidence 588999999976432111 111112 6789999999999999999999999999998721
Q ss_pred CCcceeEEeccccccEEEEEEecC-CC-EEEeeCCCcEEEEECCCcc------eeeecCCCceeeeEEEEeeceeecccc
Q 003217 229 DGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIE------KALSLKPEERHTAALIVERSYIDLRSH 300 (838)
Q Consensus 229 ~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~~~~------~~~~~~~~~~~~~~~~~~~s~~~l~~~ 300 (838)
...+....+.+|.++|++++|+|+ +. |++|+.|++|++||+.+.. ..+.... +..|
T Consensus 101 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----------------~~~~ 164 (416)
T 2pm9_A 101 NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ----------------SMSS 164 (416)
T ss_dssp SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC----------------SCCS
T ss_pred ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc----------------ccCC
Confidence 111467788999999999999998 65 8899999999999997754 1111100 0011
Q ss_pred eeccceeeeecCCeEEEEEcCC-CCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEe
Q 003217 301 LSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVT 378 (838)
Q Consensus 301 ~~~~~~~~~~s~~v~~las~~~-~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s 378 (838)
...+.++++.++ +..+++++ +++|++||+++++++..+..+...
T Consensus 165 ----------~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------------------------ 210 (416)
T 2pm9_A 165 ----------VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN------------------------ 210 (416)
T ss_dssp ----------SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS------------------------
T ss_pred ----------CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc------------------------
Confidence 345777888877 56777766 678999999999988877654210
Q ss_pred cCCCCcceeeeeEeecC-cceeeecCCc---EEEEec--c-----Cccc-cCCCceEEEEEcC-CCc-EEEEECCCeEEE
Q 003217 379 SSKKDKAQSSFGFFQRS-RNAIMGAADA---VRRVAA--K-----GGFG-DDNRRTEALTTSI-DGM-IWTGGANGLLLQ 444 (838)
Q Consensus 379 ~~~~~~~~~s~~~~~~~-~~~~~g~~~~---v~~v~~--~-----g~~~-~~~~~v~ala~S~-dg~-l~Sgs~DgtIrl 444 (838)
.........+.+.+.+ ..++++..++ ..+++. . ..+. .|...|.+++++| ++. |++|+.|++|++
T Consensus 211 -~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~ 289 (416)
T 2pm9_A 211 -SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLL 289 (416)
T ss_dssp -SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEE
T ss_pred -cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEE
Confidence 0001111223344433 2344455443 333332 1 1244 5778899999998 776 899999999999
Q ss_pred EcC-CCCeeeEeecCCccEEEEEE--cC-CEEEEEeeCCeEEEEeCC-Ccccccc-------------------------
Q 003217 445 WDP-NGNRLQDFQYLPFAVQCLCT--FG-SQIWVGYMNGIVQVLDLE-GNLLGGW------------------------- 494 (838)
Q Consensus 445 WD~-~g~~l~tl~~H~~~V~sls~--dG-~~LasGs~DgtIrlWD~~-g~~i~~l------------------------- 494 (838)
||+ +++++.++.+|...|.++++ ++ .+|++|+.|++|+|||+. ++.....
T Consensus 290 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (416)
T 2pm9_A 290 WNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKE 369 (416)
T ss_dssp ECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCS
T ss_pred eeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccc
Confidence 999 78999999999999998876 56 799999999999999986 3322211
Q ss_pred ----------cccccCEEEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 495 ----------VAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 495 ----------~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
..|...|.+++ +||+++++++.|++|++|++.+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 370 KPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred ccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 11666675554 6899999999999999999875
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=271.29 Aligned_cols=268 Identities=16% Similarity=0.183 Sum_probs=205.1
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+.+++.. +..|.+ +.|++|++||+.+...... ...+ ..+|.+++|+|++++|++|+
T Consensus 57 ~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~-~~~v~~~~~s~~~~~l~s~~ 116 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA-------------------IPLR-SSWVMTCAYAPSGNYVACGG 116 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE-------------------EECS-SSCEEEEEECTTSSEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceE-------------------eecC-CccEEEEEECCCCCEEEEEe
Confidence 45666654 445655 5699999999876433211 1233 77899999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
.|++|++|++.++. ........+.+|.+.|.++.|++++.|++|+.|++|++||+.++.....+.
T Consensus 117 ~d~~v~iw~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~----------- 181 (340)
T 1got_B 117 LDNICSIYNLKTRE----GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT----------- 181 (340)
T ss_dssp TTCEEEEEETTTCS----BSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-----------
T ss_pred CCCeEEEEECccCC----CcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEc-----------
Confidence 99999999998752 122345678899999999999999999999999999999997754332221
Q ss_pred eeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccc
Q 003217 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (838)
+| ...+.++++++++..+++++ +++|++||+++++++.++.+|...+..+
T Consensus 182 --------~h----------~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v----------- 232 (340)
T 1got_B 182 --------GH----------TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI----------- 232 (340)
T ss_dssp --------CC----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEE-----------
T ss_pred --------CC----------CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEE-----------
Confidence 12 44678888888888888877 6899999999999988887765543333
Q ss_pred cceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc--C----ccc--cCCCceEEEEEcCCCc-EEEEECCC
Q 003217 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--G----GFG--DDNRRTEALTTSIDGM-IWTGGANG 440 (838)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g----~~~--~~~~~v~ala~S~dg~-l~Sgs~Dg 440 (838)
.|.+++...++|+.++..++|.. + .+. .+...|.+++|+|+|. +++|+.|+
T Consensus 233 --------------------~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~ 292 (340)
T 1got_B 233 --------------------CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292 (340)
T ss_dssp --------------------EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred --------------------EEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCC
Confidence 33444444556666665555541 1 111 1234688999999998 78999999
Q ss_pred eEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEe
Q 003217 441 LLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 441 tIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (838)
+|++||+ +++++.++.+|..+|.++++ +|.+|++|+.|++|+|||
T Consensus 293 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 293 NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999 78999999999999999976 688999999999999997
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=275.53 Aligned_cols=323 Identities=16% Similarity=0.157 Sum_probs=233.4
Q ss_pred EEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003217 138 IVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIM 216 (838)
Q Consensus 138 l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIr 216 (838)
+..++..|++ +.|+.|++||+.+...... + .+...+.+.++++++++|++|+.||+|+
T Consensus 64 ~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~-----------------~----~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 122 (420)
T 3vl1_A 64 FEKVGSHLYKARLDGHDFLFNTIIRDGSKM-----------------L----KRADYTAVDTAKLQMRRFILGTTEGDIK 122 (420)
T ss_dssp EEEEETTEEEEEETTEEEEEECCSEETTTT-----------------S----CSCCEEEEEEECSSSCEEEEEETTSCEE
T ss_pred eeecCCeEEEEEcCCcEEEEEecccceeeE-----------------E----ecCCceEEEEEecCCCEEEEEECCCCEE
Confidence 4455666666 5699999999876433211 1 1123455567899999999999999999
Q ss_pred EEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeecee
Q 003217 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (838)
Q Consensus 217 vWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 295 (838)
+||+.++ +....+.+|.+.|++++|+|+|+ |++|+.|++|++||+.+++....+.
T Consensus 123 iwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---------------- 178 (420)
T 3vl1_A 123 VLDSNFN--------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---------------- 178 (420)
T ss_dssp EECTTSC--------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE----------------
T ss_pred EEeCCCc--------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc----------------
Confidence 9999886 56667789999999999999998 7899999999999997654322211
Q ss_pred ecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCc---eEEeeecccCcccccccc
Q 003217 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQ---IENRVDMSLLPDFAMEDE 371 (838)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~---~~~~~~~s~~~~~~~~~~ 371 (838)
+| ...+.++++++++..+++++ +++|++||+++++++..+..+.. .+..+.+.+.......
T Consensus 179 ---~h----------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-- 243 (420)
T 3vl1_A 179 ---GH----------RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLH-- 243 (420)
T ss_dssp ---CC----------SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCG--
T ss_pred ---CC----------CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceee--
Confidence 12 45688888888888888877 67899999999999988875321 2222222211111000
Q ss_pred eeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc--C----cc-ccCCCceEEEEEcCCCc--EEEEECCCeE
Q 003217 372 FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--G----GF-GDDNRRTEALTTSIDGM--IWTGGANGLL 442 (838)
Q Consensus 372 ~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g----~~-~~~~~~v~ala~S~dg~--l~Sgs~DgtI 442 (838)
. ........+.|.+++..+++|..++..+++.. + .+ ..+...|.+++++|++. +++|+.||+|
T Consensus 244 ------~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i 315 (420)
T 3vl1_A 244 ------E--ISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGML 315 (420)
T ss_dssp ------G--GCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred ------e--cccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeE
Confidence 0 00112234566677777788888887777651 1 11 23667899999999985 7899999999
Q ss_pred EEEcC-CCC-eeeEeec-CCccEEEEEE-cCCEEEEEeeCCeEEEEeCCC----------cccccccccccCEEEEE--e
Q 003217 443 LQWDP-NGN-RLQDFQY-LPFAVQCLCT-FGSQIWVGYMNGIVQVLDLEG----------NLLGGWVAHSSPVIKMA--V 506 (838)
Q Consensus 443 rlWD~-~g~-~l~tl~~-H~~~V~sls~-dG~~LasGs~DgtIrlWD~~g----------~~i~~l~gH~~~V~sla--~ 506 (838)
++||+ +++ .+..+.+ |...|.++.. +|++|++|+.|++|++||+.. .....+.+|.+.|.+++ +
T Consensus 316 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 395 (420)
T 3vl1_A 316 AQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVS 395 (420)
T ss_dssp EEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEEC
T ss_pred EEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEcc
Confidence 99999 554 4777877 6778888854 688999999999999999753 12335668889998887 4
Q ss_pred CCC---EEEEEcCCCCeeeeecCCC
Q 003217 507 GAG---YIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 507 dg~---~l~S~S~DgtIrlWdl~s~ 528 (838)
+++ .+++++.++.+++|++.+|
T Consensus 396 ~~~~~g~l~a~g~~g~~~~~~~~~~ 420 (420)
T 3vl1_A 396 DDESNGEVLEVGKNNFCALYNLSNP 420 (420)
T ss_dssp CSSSSCEEEEEETTTEEEEEESCC-
T ss_pred CCCCcceEEEEcCCceEEEEeccCC
Confidence 777 7888888999999998653
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-29 Score=282.78 Aligned_cols=271 Identities=18% Similarity=0.280 Sum_probs=209.6
Q ss_pred ceeEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 133 CFLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 133 ~~~~~l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
..+.++..+++.|++ +.|+.|++||+.+...... ...| .++|.|+++ ++++|++|+.
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h-~~~v~~l~~--~~~~l~sg~~ 191 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRI-------------------LTGH-TGSVLCLQY--DERVIITGSS 191 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEE-------------------ECCC-SSCEEEEEC--CSSEEEEEET
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCC-CCcEEEEEE--CCCEEEEEcC
Confidence 346677777877777 5689999999976543211 1123 779999998 6789999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEe
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~ 291 (838)
||+|++||+.++ +....+.+|...|.+++|++ +.|++|+.||+|++||+.+....... .
T Consensus 192 dg~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~-------~----- 250 (435)
T 1p22_A 192 DSTVRVWDVNTG--------EMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLR-------R----- 250 (435)
T ss_dssp TSCEEEEESSSC--------CEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEE-------E-----
T ss_pred CCeEEEEECCCC--------cEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceee-------e-----
Confidence 999999999987 67788999999999999974 46899999999999999764321000 0
Q ss_pred eceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccccccc
Q 003217 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (838)
Q Consensus 292 ~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~ 370 (838)
.+.+| ...+.++.. ++..+++++ +++|++||+++++++.++..|..
T Consensus 251 ----~~~~~----------~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----------------- 297 (435)
T 1p22_A 251 ----VLVGH----------RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR----------------- 297 (435)
T ss_dssp ----EECCC----------SSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSS-----------------
T ss_pred ----EecCC----------CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCC-----------------
Confidence 01111 345666666 456676665 68999999999988776643321
Q ss_pred ceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CC
Q 003217 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NG 449 (838)
Q Consensus 371 ~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g 449 (838)
.+.++.++ +..+++|+.||+|++||+ ++
T Consensus 298 --------------------------------------------------~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 298 --------------------------------------------------GIACLQYR-DRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp --------------------------------------------------CEEEEEEE-TTEEEEEETTSCEEEEETTTC
T ss_pred --------------------------------------------------cEEEEEeC-CCEEEEEeCCCeEEEEECCCC
Confidence 12233342 346899999999999999 79
Q ss_pred CeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-Cc---------ccccccccccCEEEEEeCCCEEEEEcCCCC
Q 003217 450 NRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GN---------LLGGWVAHSSPVIKMAVGAGYIFTLANHGG 519 (838)
Q Consensus 450 ~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~---------~i~~l~gH~~~V~sla~dg~~l~S~S~Dgt 519 (838)
+++.++.+|...|.++++++.+|++|+.||+|++||+. ++ ++..+.+|.+.|.++++++++++|++.||+
T Consensus 327 ~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 327 ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDT 406 (435)
T ss_dssp CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSE
T ss_pred CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCE
Confidence 99999999999999999999999999999999999975 33 688899999999999999999999999999
Q ss_pred eeeeecCCCCC
Q 003217 520 IRGWNVTSPGP 530 (838)
Q Consensus 520 IrlWdl~s~~~ 530 (838)
|++||+....+
T Consensus 407 i~iwd~~~~~~ 417 (435)
T 1p22_A 407 ILIWDFLNDPA 417 (435)
T ss_dssp EEEEC------
T ss_pred EEEEECCCCCC
Confidence 99999876433
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-29 Score=267.49 Aligned_cols=237 Identities=12% Similarity=0.052 Sum_probs=178.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC--CC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvW 267 (838)
..+|.+++|+|+|++|+||+.|++|++||+.++. .+...++.||.++|++|+|+++ |+ |+|||.|++||||
T Consensus 9 ~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 9 NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred cCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC------cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 7799999999999999999999999999997531 1456789999999999999864 76 7899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC--CCEEEEeC-CCcEEEEeccCccE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~V~s~s-~~tI~lWD~~tg~~ 344 (838)
|+.++..... . .+.+| ...+.++++.++ +..+++++ +++|++||++++..
T Consensus 83 d~~~~~~~~~--------~---------~~~~h----------~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~ 135 (297)
T 2pm7_B 83 KEENGRWSQI--------A---------VHAVH----------SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT 135 (297)
T ss_dssp EBSSSCBCCC--------E---------EECCC----------SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC
T ss_pred EcCCCceEEE--------E---------EeecC----------CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc
Confidence 9976421100 0 01111 446788888775 66777776 67999999987531
Q ss_pred --EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCce
Q 003217 345 --LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (838)
Q Consensus 345 --l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (838)
...+.+|.. .|
T Consensus 136 ~~~~~~~~h~~-------------------------------------------------------------------~v 148 (297)
T 2pm7_B 136 TSPIIIDAHAI-------------------------------------------------------------------GV 148 (297)
T ss_dssp BCCEEEECCSS-------------------------------------------------------------------CE
T ss_pred eeeeeeecccC-------------------------------------------------------------------cc
Confidence 122222221 22
Q ss_pred EEEEEcCC-------------C-cEEEEECCCeEEEEcC-CCC----eeeEeecCCccEEEEEE--c---CCEEEEEeeC
Q 003217 423 EALTTSID-------------G-MIWTGGANGLLLQWDP-NGN----RLQDFQYLPFAVQCLCT--F---GSQIWVGYMN 478 (838)
Q Consensus 423 ~ala~S~d-------------g-~l~Sgs~DgtIrlWD~-~g~----~l~tl~~H~~~V~sls~--d---G~~LasGs~D 478 (838)
.+++++|+ + .|++|+.|++|++||+ +++ ++.++.+|...|+++++ + +.+|++|+.|
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence 22333332 3 5899999999999999 555 67789999999999976 4 3699999999
Q ss_pred CeEEEEeCCC-c---ccccc--cccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 479 GIVQVLDLEG-N---LLGGW--VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 479 gtIrlWD~~g-~---~i~~l--~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
++|+|||++. . ....+ .+|.+.|+++++ ++++|++++.|++|++|+...
T Consensus 229 ~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 9999999863 1 12233 578999999985 788999999999999999754
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-29 Score=275.38 Aligned_cols=282 Identities=13% Similarity=0.101 Sum_probs=210.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|.|++|+|++++|++|+.||.|++||... +....+.+|..+|++++|+|+++ |++++.|++|++||+
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 178 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKTG---------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNV 178 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEETTS---------CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEEC
Confidence 66999999999999999999999999999443 56778899999999999999998 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEe
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~ 349 (838)
.++.....+.......... ....+ ......+.+++..+++..+..+.++.|++||+.+++.+..+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~-------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 244 (425)
T 1r5m_A 179 ISGTVMQHFELKETGGSSI-------NAENH-------SGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLI 244 (425)
T ss_dssp TTTEEEEEECCC-----------------------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEEC
T ss_pred CCCcEEEEeeccccCccce-------eeccc-------cCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeec
Confidence 8755433332211100000 00000 000111444555554444444446789999999988777665
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--c----CccccCCCceE
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNRRTE 423 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~~v~ 423 (838)
.+...+. .+.+.+.+..++++..++..+++. . ..+..+...+.
T Consensus 245 ~~~~~i~-------------------------------~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 293 (425)
T 1r5m_A 245 GHHGPIS-------------------------------VLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIV 293 (425)
T ss_dssp CCSSCEE-------------------------------EEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEE
T ss_pred cCCCceE-------------------------------EEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEE
Confidence 5443222 233444444556666666555554 1 12345777899
Q ss_pred EEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Cc----------
Q 003217 424 ALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GN---------- 489 (838)
Q Consensus 424 ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~---------- 489 (838)
+++++|++.+++++.|+.|++||+ +++++..+..|...|.++++ +|++|++|+.||.|++||+. ++
T Consensus 294 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 373 (425)
T 1r5m_A 294 SASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNR 373 (425)
T ss_dssp EEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---------
T ss_pred EEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccc
Confidence 999999998899999999999999 78999999999999999876 68899999999999999987 56
Q ss_pred ----------cccccccccc--CEEEEEe--CCCEEEEEcCCCCeeeeecC
Q 003217 490 ----------LLGGWVAHSS--PVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 490 ----------~i~~l~gH~~--~V~sla~--dg~~l~S~S~DgtIrlWdl~ 526 (838)
++..+.+|.. .|.++++ ++++|++++.|++|++|++.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 374 DGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -----CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 7889999977 9999985 67899999999999999974
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=272.76 Aligned_cols=239 Identities=14% Similarity=0.048 Sum_probs=178.8
Q ss_pred ceeEEEEecCC-EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 133 CFLRTIVCTEE-QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 133 ~~~~~l~~~~~-~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
..+.+++...+ .|.+ +.|++|||||+.+...... ..+....| .++|.||+|+|+|++|+||+
T Consensus 83 ~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~---------------~~~~~~~H-~~~V~~v~~spdg~~l~sgs 146 (344)
T 4gqb_B 83 AGVADLTWVGERGILVASDSGAVELWELDENETLIV---------------SKFCKYEH-DDIVSTVSVLSSGTQAVSGS 146 (344)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEE---------------EEEEEECC-SSCEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeE---------------eeccccCC-CCCEEEEEECCCCCEEEEEe
Confidence 34667776544 6665 5689999999976543211 01112234 78999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeecCCCceeeeEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~ 288 (838)
.||+|++||+.++ +.+.++.+|.+.|++++|++++. |+|||.|++||+||+.+++....+...
T Consensus 147 ~d~~i~iwd~~~~--------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~------- 211 (344)
T 4gqb_B 147 KDICIKVWDLAQQ--------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS------- 211 (344)
T ss_dssp TTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---------
T ss_pred CCCeEEEEECCCC--------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc-------
Confidence 9999999999997 67888999999999999999985 689999999999999875543222110
Q ss_pred EEeeceeecccceeccceeeeecCCeEEEEEcCC-CCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccc
Q 003217 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (838)
.....+.++++.+. +..+++++ +++|++||+++++++.++.+
T Consensus 212 --------------------~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~---------------- 255 (344)
T 4gqb_B 212 --------------------APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV---------------- 255 (344)
T ss_dssp ----------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC----------------
T ss_pred --------------------eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC----------------
Confidence 01224567777664 44666665 68999999998876555433
Q ss_pred ccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC-c-EEEEECCCeEEE
Q 003217 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-M-IWTGGANGLLLQ 444 (838)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg-~-l~Sgs~DgtIrl 444 (838)
|...|.+++|+|++ . |++|+.|++|++
T Consensus 256 ---------------------------------------------------h~~~v~~v~fsp~g~~~lasgs~D~~i~v 284 (344)
T 4gqb_B 256 ---------------------------------------------------HSQCVTGLVFSPHSVPFLASLSEDCSLAV 284 (344)
T ss_dssp ---------------------------------------------------CSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred ---------------------------------------------------CCCCEEEEEEccCCCeEEEEEeCCCeEEE
Confidence 23345678899987 3 789999999999
Q ss_pred EcCCCCeeeEeecCCccEEEEEE--cCC-EEEEEeeCCeEEEEeCCCc
Q 003217 445 WDPNGNRLQDFQYLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLEGN 489 (838)
Q Consensus 445 WD~~g~~l~tl~~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~g~ 489 (838)
||+....+..+.+|.+.|+++++ +|+ .|++|+.|++|++|++..+
T Consensus 285 wd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 285 LDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 99954344567899999999976 565 6789999999999998744
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-28 Score=282.29 Aligned_cols=334 Identities=10% Similarity=0.106 Sum_probs=225.4
Q ss_pred eeEEEEecCC---EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCC---CeEEEEEcCC-CCE
Q 003217 134 FLRTIVCTEE---QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVS---SVMCMVGDEA-SGV 205 (838)
Q Consensus 134 ~~~~l~~~~~---~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~---~V~~la~s~d-g~~ 205 (838)
.+.+++...+ .+.+ +.|+.|++||+.+...... + ..+ .. +|.|++|+|+ +++
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~-----------------~--~~~-~~~~~~v~~~~~~~~~~~~ 221 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS-----------------D--RTH-HKQGSFVRDVEFSPDSGEF 221 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE-----------------E--CSS-SCTTCCEEEEEECSTTCCE
T ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee-----------------e--ccc-CCCCceEEEEEECCCCCCE
Confidence 3445554432 4554 5689999999876443211 1 112 55 8999999999 999
Q ss_pred EEEEeCCCcEEEEECCCCccCCCCCcceeEEe-c---cccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCC
Q 003217 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-Q---AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 206 LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l-~---gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
|++|+.||.|++||+.++ +....+ . +|.++|++++|+ +++ |++++.|++|++||+.+++....+..
T Consensus 222 l~~~~~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 222 VITVGSDRKISCFDGKSG--------EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp EEEEETTCCEEEEETTTC--------CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEEeCCCeEEEEECCCC--------CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 999999999999999887 567777 6 999999999999 887 78999999999999976543322211
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeee
Q 003217 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (838)
Q Consensus 281 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (838)
... . ....+..+... ++..+++++ ++.|++||+.+++++..+..|...+..+.
T Consensus 293 ~~~------------------~-------~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~ 346 (615)
T 1pgu_A 293 DKQ------------------Q-------LGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALT 346 (615)
T ss_dssp CTT------------------C-------GGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred CCC------------------c-------ccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEE
Confidence 100 0 01233444444 455666655 67899999999988888877766555554
Q ss_pred cccC---------------------------------ccc----ccccceeeEEEecCCC--------------------
Q 003217 360 MSLL---------------------------------PDF----AMEDEFKTKIVTSSKK-------------------- 382 (838)
Q Consensus 360 ~s~~---------------------------------~~~----~~~~~~~~~~~s~~~~-------------------- 382 (838)
+ +. ... ..+..++++.....+.
T Consensus 347 ~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 425 (615)
T 1pgu_A 347 V-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTN 425 (615)
T ss_dssp T-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEET
T ss_pred e-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeC
Confidence 4 22 000 0011111111110000
Q ss_pred --------------------CcceeeeeEeecCcceeeecC-CcEEEEec--c-----CccccCCCceEEEEEcCCCc-E
Q 003217 383 --------------------DKAQSSFGFFQRSRNAIMGAA-DAVRRVAA--K-----GGFGDDNRRTEALTTSIDGM-I 433 (838)
Q Consensus 383 --------------------~~~~~s~~~~~~~~~~~~g~~-~~v~~v~~--~-----g~~~~~~~~v~ala~S~dg~-l 433 (838)
......+.+. +..++++.. ++..+++. . ..+..|...|.+++++|+|. |
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 503 (615)
T 1pgu_A 426 DDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 503 (615)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEE
T ss_pred CCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEE
Confidence 0000011111 233444554 55555543 1 23445677888888888887 7
Q ss_pred EEEECCCeEEEEcC-CCCeeeEeec-CCccEEEEEE------------cCCEEEEEeeCCeEEEEeCC-C-ccccccccc
Q 003217 434 WTGGANGLLLQWDP-NGNRLQDFQY-LPFAVQCLCT------------FGSQIWVGYMNGIVQVLDLE-G-NLLGGWVAH 497 (838)
Q Consensus 434 ~Sgs~DgtIrlWD~-~g~~l~tl~~-H~~~V~sls~------------dG~~LasGs~DgtIrlWD~~-g-~~i~~l~gH 497 (838)
++|+.|+.|++||+ +++++.++.+ |...|+++++ +|++|++|+.||+|+|||++ + +++..+.+|
T Consensus 504 ~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h 583 (615)
T 1pgu_A 504 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH 583 (615)
T ss_dssp EEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS
T ss_pred EEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC
Confidence 88888888999998 6888888887 8888888865 67888888889999999987 3 678888889
Q ss_pred ccCEEEEE--eCCCEEEEEcCCCCeeeeecC
Q 003217 498 SSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 498 ~~~V~sla--~dg~~l~S~S~DgtIrlWdl~ 526 (838)
.+.|.+++ ++++ |+|++.|++|++|++.
T Consensus 584 ~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 584 KDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp TTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred ccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 88888887 4777 8888999999999875
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-27 Score=254.19 Aligned_cols=274 Identities=14% Similarity=0.186 Sum_probs=209.7
Q ss_pred eeEEEEec--CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 134 FLRTIVCT--EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
.+.+++.. +..|+++.|+.|++||+.+...... ...+....+ ..+|.+++|+|++++|++|+.
T Consensus 53 ~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~--------------~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~ 117 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSP--------------VSQLDCLNR-DNYIRSCKLLPDGCTLIVGGE 117 (337)
T ss_dssp CCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSC--------------SEEEECSCT-TSBEEEEEECTTSSEEEEEES
T ss_pred ceEEEEEecCCcEEEEcCCCeEEEEECCCCCceee--------------eecccccCC-CCcEEEEEEcCCCCEEEEEcC
Confidence 34455544 4577777799999999976432211 111111123 779999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
||+|++||+.++. ......+.+|...|++++|+|+++ |++|+.|+.|++||+.+.+....+.
T Consensus 118 d~~i~~~d~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~----------- 180 (337)
T 1gxr_A 118 ASTLSIWDLAAPT------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ----------- 180 (337)
T ss_dssp SSEEEEEECCCC--------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----------
T ss_pred CCcEEEEECCCCC------cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee-----------
Confidence 9999999998862 124567889999999999999998 7899999999999997654322221
Q ss_pred eeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccc
Q 003217 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (838)
.| ...+.+++.++++..+++++ ++.|++||+++++.+..+..
T Consensus 181 --------~~----------~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~------------------- 223 (337)
T 1gxr_A 181 --------GH----------TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF------------------- 223 (337)
T ss_dssp --------CC----------SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-------------------
T ss_pred --------cc----------cCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC-------------------
Confidence 11 34577888888888888876 67899999998876544321
Q ss_pred cceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCC
Q 003217 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN 448 (838)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~ 448 (838)
...+.+++++|++. +++++.|+.|++||+.
T Consensus 224 -------------------------------------------------~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 224 -------------------------------------------------TSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp -------------------------------------------------SSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred -------------------------------------------------CCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 11244677888887 7899999999999996
Q ss_pred CCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeee
Q 003217 449 GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGW 523 (838)
Q Consensus 449 g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlW 523 (838)
......+..|...|.++++ +|++|++++.||.|++||++ ++.+ ....|...|.++++ +++++++++.|+.|++|
T Consensus 255 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 255 KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp SSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EEEECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE-EEecCCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence 5455678889999999876 68899999999999999987 4544 34568999999875 78899999999999999
Q ss_pred ecC
Q 003217 524 NVT 526 (838)
Q Consensus 524 dl~ 526 (838)
++.
T Consensus 334 ~~~ 336 (337)
T 1gxr_A 334 EVI 336 (337)
T ss_dssp EEE
T ss_pred EEe
Confidence 963
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-28 Score=290.99 Aligned_cols=277 Identities=17% Similarity=0.256 Sum_probs=201.4
Q ss_pred ceeEEEEec--C-CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEE
Q 003217 133 CFLRTIVCT--E-EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (838)
Q Consensus 133 ~~~~~l~~~--~-~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaS 208 (838)
..+.+|+.. + +.|.+ +.|++||+||+.+...... ....+...| ...|.|++|+|++++|+|
T Consensus 383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h-~~~v~~v~~s~~g~~l~s 447 (694)
T 3dm0_A 383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGH-SHFVEDVVLSSDGQFALS 447 (694)
T ss_dssp SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECC-SSCEEEEEECTTSSEEEE
T ss_pred ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCC-CCcEEEEEECCCCCEEEE
Confidence 346666654 2 34555 5699999999865321100 000011233 789999999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeE
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~ 287 (838)
|+.||+||+||+.++ .....+.+|.+.|++++|+|+|+ |+|||.|++|||||+.... .......
T Consensus 448 gs~Dg~v~vwd~~~~--------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~-~~~~~~~------ 512 (694)
T 3dm0_A 448 GSWDGELRLWDLAAG--------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC-KYTISEG------ 512 (694)
T ss_dssp EETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-EEEECSS------
T ss_pred EeCCCcEEEEECCCC--------cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc-ceeeccC------
Confidence 999999999999987 67788999999999999999997 8999999999999985421 1111100
Q ss_pred EEEeeceeecccceeccceeeeecCCeEEEEEcCCC--CEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCc
Q 003217 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR--AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (838)
Q Consensus 288 ~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~--~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~ 364 (838)
..+| ...+.++++++++ ..+++++ +++|++||+++++++.++.
T Consensus 513 ---------~~~h----------~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~--------------- 558 (694)
T 3dm0_A 513 ---------GEGH----------RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA--------------- 558 (694)
T ss_dssp ---------TTSC----------SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC---------------
T ss_pred ---------CCCC----------CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc---------------
Confidence 0011 3457788887765 4566666 6899999998877654443
Q ss_pred ccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEE
Q 003217 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLL 443 (838)
Q Consensus 365 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIr 443 (838)
.|...|.+++++|+|. |++|+.|++|+
T Consensus 559 ----------------------------------------------------~h~~~v~~v~~spdg~~l~sg~~Dg~i~ 586 (694)
T 3dm0_A 559 ----------------------------------------------------GHTGYVSTVAVSPDGSLCASGGKDGVVL 586 (694)
T ss_dssp ----------------------------------------------------CCSSCEEEEEECTTSSEEEEEETTSBCE
T ss_pred ----------------------------------------------------CCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 2334466788999987 78999999999
Q ss_pred EEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccccccccc-------------------cC
Q 003217 444 QWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS-------------------SP 500 (838)
Q Consensus 444 lWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~-------------------~~ 500 (838)
+||+ +++++..+.. ...|.++++ ++.+|++ +.|+.|+|||++ ++++..+..|. -.
T Consensus 587 iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (694)
T 3dm0_A 587 LWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCA-ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIY 664 (694)
T ss_dssp EEETTTTEEEECCBC-SSCEEEEEECSSSSEEEE-EETTEEEEEETTTTEEEEEECCCCC----------------CCCC
T ss_pred EEECCCCceEEEecC-CCcEEEEEEcCCCcEEEE-EcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEE
Confidence 9999 7888888765 457888876 4556655 567789999997 55555554322 23
Q ss_pred EEEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 501 VIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 501 V~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
|.+++ +||++|+|||.||+||+|++..
T Consensus 665 ~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 665 CTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred eeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 67776 4789999999999999999854
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-27 Score=268.42 Aligned_cols=297 Identities=17% Similarity=0.249 Sum_probs=224.6
Q ss_pred eEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 003217 135 LRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (838)
Q Consensus 135 ~~~l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DG 213 (838)
+.++..+++.|++ +.|++|++||+.+...... + ..| .++|.|++++ +++|++|+.||
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~-----------------~--~~h-~~~v~~~~~~--~~~l~s~~~dg 179 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT-----------------L--VGH-TGGVWSSQMR--DNIIISGSTDR 179 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEEEE-----------------C--CCC-SSCEEEEEEE--TTEEEEEETTS
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcEEEE-----------------E--cCC-CCCEEEEEec--CCEEEEEeCCC
Confidence 4566777888877 5689999999976543211 1 123 7799999998 57999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeec
Q 003217 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (838)
+|++||+.++ +....+.+|...|++++|++ ..|++|+.|++|++||+.+++....+.
T Consensus 180 ~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~-------------- 236 (445)
T 2ovr_B 180 TLKVWNAETG--------ECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWDIETGQCLHVLM-------------- 236 (445)
T ss_dssp CEEEEETTTT--------EEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEESSSCCEEEEEE--------------
T ss_pred eEEEEECCcC--------cEEEEECCCCCcEEEEEecC-CEEEEEeCCCEEEEEECCCCcEEEEEc--------------
Confidence 9999999987 67888999999999999964 348999999999999997654322211
Q ss_pred eeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccce
Q 003217 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (838)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (838)
+| ...+.++.. ++..+++++ +++|++||+.+++++.++..|...+..+.+
T Consensus 237 -----~~----------~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~------------ 287 (445)
T 2ovr_B 237 -----GH----------VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF------------ 287 (445)
T ss_dssp -----CC----------SSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE------------
T ss_pred -----CC----------cccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE------------
Confidence 11 345666666 355566655 689999999999998888765543322221
Q ss_pred eeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC----ccccCCCceEEEEEcCCCcEEEEECCCeEEEEc
Q 003217 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGMIWTGGANGLLLQWD 446 (838)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD 446 (838)
++..++++..++..+++. .+ .+..|...+.++.++ +..+++|+.||+|++||
T Consensus 288 ---------------------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 288 ---------------------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKIWD 345 (445)
T ss_dssp ---------------------CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE-TTEEEEEETTSCEEEEE
T ss_pred ---------------------CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe-CCEEEEEeCCCeEEEEE
Confidence 122334455555444443 11 234566677777764 34689999999999999
Q ss_pred C-CCCeeeEeec---CCccEEEEEEcCCEEEEEeeCCeEEEEeCC-Ccccccc-----cccccCEEEEEe--CCCEEEEE
Q 003217 447 P-NGNRLQDFQY---LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW-----VAHSSPVIKMAV--GAGYIFTL 514 (838)
Q Consensus 447 ~-~g~~l~tl~~---H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l-----~gH~~~V~sla~--dg~~l~S~ 514 (838)
+ +++++.++.+ |...|+++++++++|++|+.||+|++||+. ++++..+ .+|.+.|+++++ ++..++++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~ 425 (445)
T 2ovr_B 346 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 425 (445)
T ss_dssp TTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred CCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEc
Confidence 9 7899999986 888999999999999999999999999987 7777766 588999999986 55678899
Q ss_pred cCCCC----eeeeecCC
Q 003217 515 ANHGG----IRGWNVTS 527 (838)
Q Consensus 515 S~Dgt----IrlWdl~s 527 (838)
+.||+ |.+||+..
T Consensus 426 ~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 426 SRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CSSSSSCCEEEEEECCC
T ss_pred ccCCCCccEEEEEECCC
Confidence 99998 99999864
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-29 Score=275.11 Aligned_cols=284 Identities=8% Similarity=0.075 Sum_probs=202.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCccCCCCCc--ceeEEeccccccEEEEEEecC--------C
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDG-------RIMCWKMNARLLDSDDGF--GEVLSWQAHRGPVLSLCISSY--------G 253 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DG-------tIrvWd~~~g~~~~~~~~--~~~~~l~gH~~~V~slafs~d--------G 253 (838)
.-||+|++|+|||++|++|+.|. +|++|++..+.......+ .....|.+|...|.+++++++ +
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 35999999999999999998644 599999876520000000 112357789999999988754 1
Q ss_pred --CEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEE--e
Q 003217 254 --DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS--A 329 (838)
Q Consensus 254 --~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s--~ 329 (838)
.|++|+.|+++|+|++.+....+... ... ..... . -+...++++++++++..++. +
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~------~~~----~~~~~--~--------~~~~~~~~v~fSpDg~~la~as~ 153 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFL------TSV----DFDAS--T--------NADDYTKLVYISREGTVAAIASS 153 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEE------EEE----CSSCC--C--------CTTCCEEEEEECTTSSCEEEEES
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEe------eee----ceeec--C--------CcccCEEEEEEcCCCCEEEEEEC
Confidence 15567789999999986543222110 000 00000 0 01234788999999887654 3
Q ss_pred C-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEE
Q 003217 330 G-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR 408 (838)
Q Consensus 330 s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~ 408 (838)
+ +++|+|||+.+++++..+..++.+ . .+.|.+++..+..+..+++..
T Consensus 154 ~~d~~i~iwd~~~~~~~~~~~~~~~V-~-------------------------------~v~fspdg~~l~s~s~~~~~~ 201 (365)
T 4h5i_A 154 KVPAIMRIIDPSDLTEKFEIETRGEV-K-------------------------------DLHFSTDGKVVAYITGSSLEV 201 (365)
T ss_dssp CSSCEEEEEETTTTEEEEEEECSSCC-C-------------------------------EEEECTTSSEEEEECSSCEEE
T ss_pred CCCCEEEEeECCCCcEEEEeCCCCce-E-------------------------------EEEEccCCceEEeccceeEEE
Confidence 3 578999999999998777543321 2 234555555556666666666
Q ss_pred Eec-cC------ccccCCCceEEEEEcCCCc-EEEEECCC----eEEEEcC-CCC----eeeEeecCCccEEEEEE--cC
Q 003217 409 VAA-KG------GFGDDNRRTEALTTSIDGM-IWTGGANG----LLLQWDP-NGN----RLQDFQYLPFAVQCLCT--FG 469 (838)
Q Consensus 409 v~~-~g------~~~~~~~~v~ala~S~dg~-l~Sgs~Dg----tIrlWD~-~g~----~l~tl~~H~~~V~sls~--dG 469 (838)
++. .+ ....|...|.+++|+||+. +++++.|+ ++++||+ .+. ..+.+.+|...|+++++ ||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg 281 (365)
T 4h5i_A 202 ISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG 281 (365)
T ss_dssp EETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS
T ss_pred EEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC
Confidence 654 11 2334667889999999998 78888777 6899998 443 24567889999999865 79
Q ss_pred CEEEEEeeCCeEEEEeCC-Cccccc-ccccccCEEEEEe--CCCEEEEEcCCCCeeeeecC
Q 003217 470 SQIWVGYMNGIVQVLDLE-GNLLGG-WVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 470 ~~LasGs~DgtIrlWD~~-g~~i~~-l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~ 526 (838)
++||+|+.|++|+|||++ ++++.+ +.+|.+.|++|++ ||++|+|+|.|++||||++.
T Consensus 282 ~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 282 ELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred CceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 999999999999999997 778776 6899999999985 88999999999999999984
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=272.00 Aligned_cols=288 Identities=13% Similarity=0.136 Sum_probs=209.1
Q ss_pred eEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 003217 135 LRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (838)
Q Consensus 135 ~~~l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DG 213 (838)
+.++..+++.|++ +.|++|++||+.+...... + ..| .++|.|++|++++ +|+||+.||
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~-----------------~--~~h-~~~V~~l~~~~~~-~l~s~s~dg 183 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQ-----------------L--SGH-DGGVWALKYAHGG-ILVSGSTDR 183 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEE-----------------E--CCC-SSCEEEEEECSTT-EEEEEETTS
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEEEE-----------------E--eCC-CcCEEEEEEcCCC-EEEEEeCCC
Confidence 4466677777776 5689999999976543221 1 123 7899999999887 999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec--CCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
+|++||+.++ +....+.+|.++|++++|++ ++. |++|+.|++|++||+.+................. .
T Consensus 184 ~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~ 254 (464)
T 3v7d_B 184 TVRVWDIKKG--------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF-H 254 (464)
T ss_dssp CEEEEETTTT--------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEE-S
T ss_pred CEEEEECCCC--------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe-e
Confidence 9999999987 67888999999999999995 555 7899999999999997643221111000000000 0
Q ss_pred eec-----eeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCc
Q 003217 291 ERS-----YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (838)
Q Consensus 291 ~~s-----~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~ 364 (838)
... ...+.+ +...+.++ .+++..+++++ +++|++||+.+++++..+.+|
T Consensus 255 ~~~~~~~~~~~~~~----------~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~------------- 309 (464)
T 3v7d_B 255 TPEENPYFVGVLRG----------HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH------------- 309 (464)
T ss_dssp CGGGCTTEEEEECC----------CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCC-------------
T ss_pred ccCCCeEEEEEccC----------ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-------------
Confidence 000 000111 13344454 33466677666 689999999988876554322
Q ss_pred ccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEE
Q 003217 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLL 443 (838)
Q Consensus 365 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIr 443 (838)
...|.+++++|++. +++|+.|++|+
T Consensus 310 ------------------------------------------------------~~~v~~~~~~~~~~~l~sg~~dg~i~ 335 (464)
T 3v7d_B 310 ------------------------------------------------------TDRIYSTIYDHERKRCISASMDTTIR 335 (464)
T ss_dssp ------------------------------------------------------SSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ------------------------------------------------------CCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence 23355677888876 89999999999
Q ss_pred EEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-Ccccccc-cccccCEEEEEeCCCEEEEEcCCCCe
Q 003217 444 QWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW-VAHSSPVIKMAVGAGYIFTLANHGGI 520 (838)
Q Consensus 444 lWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l-~gH~~~V~sla~dg~~l~S~S~DgtI 520 (838)
+||+ ++++++++.+|...|.++++++++|++|+.||+|++||+. +...... ..+...+.++.++++++++++ |++|
T Consensus 336 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i 414 (464)
T 3v7d_B 336 IWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQF 414 (464)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEE
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeE
Confidence 9999 7999999999999999999999999999999999999997 3433322 223334555667999999998 9999
Q ss_pred eeeecCCCCCCc
Q 003217 521 RGWNVTSPGPLD 532 (838)
Q Consensus 521 rlWdl~s~~~~d 532 (838)
++||+.+...+.
T Consensus 415 ~iwd~~~g~~~~ 426 (464)
T 3v7d_B 415 NIYNLRSGKLVH 426 (464)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCcEEe
Confidence 999998765544
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-29 Score=268.93 Aligned_cols=252 Identities=13% Similarity=0.062 Sum_probs=177.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC--CC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvW 267 (838)
..+|.|++|+|+|++|+||+.|++||+||+.++. ......+.||.++|++|+|+++ |+ |+|||.|++|++|
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~------~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG------QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE------EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC------cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 7899999999999999999999999999998752 1245678999999999999863 65 8999999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC--CCEEEEeC-CCcEEEEeccCccE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~V~s~s-~~tI~lWD~~tg~~ 344 (838)
|+.++...... .+.+| ...+.+++++++ +..+++++ |++|++||++++..
T Consensus 87 d~~~~~~~~~~-----------------~~~~h----------~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~ 139 (316)
T 3bg1_A 87 REENGTWEKSH-----------------EHAGH----------DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ 139 (316)
T ss_dssp CCSSSCCCEEE-----------------EECCC----------SSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC
T ss_pred ECCCCcceEEE-----------------EccCC----------CCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC
Confidence 99764211000 01112 345777888775 56777777 68999999987632
Q ss_pred EE---EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCc-ceeeecCCcEEEEeccCccccCCC
Q 003217 345 LK---VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAAKGGFGDDNR 420 (838)
Q Consensus 345 l~---~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~-~~~~g~~~~v~~v~~~g~~~~~~~ 420 (838)
.. .+..|...+ ..+.+.+... ..+..+. .+ .
T Consensus 140 ~~~~~~~~~h~~~v-------------------------------~~~~~~~~~~~~~~~~~~--------~~----~-- 174 (316)
T 3bg1_A 140 WEVKKINNAHTIGC-------------------------------NAVSWAPAVVPGSLIDHP--------SG----Q-- 174 (316)
T ss_dssp EEECCBTTSSSSCB-------------------------------CCCEECCCCCC------C--------CS----C--
T ss_pred cceeeeeccccCCc-------------------------------ceEEEccccCCccccccc--------cc----c--
Confidence 11 111111100 0111111100 0000000 00 0
Q ss_pred ceEEEEEcCC-CcEEEEECCCeEEEEcCC-C---CeeeEeecCCccEEEEEE--cC----CEEEEEeeCCeEEEEeCCC-
Q 003217 421 RTEALTTSID-GMIWTGGANGLLLQWDPN-G---NRLQDFQYLPFAVQCLCT--FG----SQIWVGYMNGIVQVLDLEG- 488 (838)
Q Consensus 421 ~v~ala~S~d-g~l~Sgs~DgtIrlWD~~-g---~~l~tl~~H~~~V~sls~--dG----~~LasGs~DgtIrlWD~~g- 488 (838)
...+ ..|++|+.|++|++||+. + ++++++.+|..+|+++++ ++ ++|++|+.|++|+|||++.
T Consensus 175 ------~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~ 248 (316)
T 3bg1_A 175 ------KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDA 248 (316)
T ss_dssp ------CCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSST
T ss_pred ------CccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCc
Confidence 0112 358999999999999994 4 477889999999999975 44 7899999999999999863
Q ss_pred ---c-ccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecC
Q 003217 489 ---N-LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 489 ---~-~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~ 526 (838)
+ ....+.+|.+.|+++++ ++++|++++.|++|++|+..
T Consensus 249 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 249 SSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred cccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 1 24556789999999985 68899999999999999965
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=273.32 Aligned_cols=271 Identities=15% Similarity=0.162 Sum_probs=203.2
Q ss_pred CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003217 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (838)
Q Consensus 142 ~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~ 221 (838)
.+.|.+|.|++|+|||..++..... +....+ ...|.||+|+|+|++|++|+.||+|++||+.
T Consensus 116 ~n~lAvgld~tV~lWd~~tg~~~~~-----------------~~~~~~-~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~ 177 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSASSGDILQL-----------------LQMEQP-GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177 (420)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEE-----------------EECCST-TCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEEeCCEEEEEECCCCCEEEE-----------------EEecCC-CCcEEEEEECCCCCEEEEEECCCeEEEEEcC
Confidence 4466678899999999987543211 111223 6789999999999999999999999999999
Q ss_pred CCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccc
Q 003217 222 ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300 (838)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~ 300 (838)
++ +.+..+.+|...|.+++++ +. |++|+.|+++++||.......+.. +.+|
T Consensus 178 ~~--------~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~------------------~~~h 229 (420)
T 4gga_A 178 QQ--------KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT------------------LSGH 229 (420)
T ss_dssp TT--------EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE------------------EECC
T ss_pred CC--------cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEE------------------eccc
Confidence 97 6788899999999998875 45 789999999999998653321110 1112
Q ss_pred eeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEec
Q 003217 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTS 379 (838)
Q Consensus 301 ~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~ 379 (838)
...+..+...+.+..+++++ ++.+++||..+++.... .. .
T Consensus 230 ----------~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~-----~~------------------~------ 270 (420)
T 4gga_A 230 ----------SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-----PL------------------Q------ 270 (420)
T ss_dssp ----------SSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC-----CS------------------E------
T ss_pred ----------ccceeeeeecCCCCeeeeeeccccceEEeeccccccce-----ee------------------e------
Confidence 34566777778888888776 67899999987542000 00 0
Q ss_pred CCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc--EEE--EECCCeEEEEcC-CCCeeeE
Q 003217 380 SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWT--GGANGLLLQWDP-NGNRLQD 454 (838)
Q Consensus 380 ~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~--l~S--gs~DgtIrlWD~-~g~~l~t 454 (838)
.+..+...|.+++++|++. +++ |+.|++|++||+ +|+++..
T Consensus 271 ----------------------------------~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 271 ----------------------------------TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp ----------------------------------EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE
T ss_pred ----------------------------------eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee
Confidence 0113344566778877653 444 457999999999 7899888
Q ss_pred eecCCccEEEEE--EcCCEEEEEe--eCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 455 FQYLPFAVQCLC--TFGSQIWVGY--MNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 455 l~~H~~~V~sls--~dG~~LasGs--~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
+..|.. |.++. ++++.+++++ .|++|+|||.. ++++.++.||.+.|++|++ ||++|+|||.|++||+||+..
T Consensus 317 ~~~~~~-v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 317 VDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp EECSSC-EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred eccccc-eeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 877654 55553 4678777765 79999999987 7899999999999999985 788999999999999999877
Q ss_pred CCCCc
Q 003217 528 PGPLD 532 (838)
Q Consensus 528 ~~~~d 532 (838)
..|..
T Consensus 396 ~~~~~ 400 (420)
T 4gga_A 396 LDPAR 400 (420)
T ss_dssp SSCC-
T ss_pred CCccc
Confidence 65543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-28 Score=270.84 Aligned_cols=234 Identities=22% Similarity=0.316 Sum_probs=187.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccc------------------ccEEEEEEecC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR------------------GPVLSLCISSY 252 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~------------------~~V~slafs~d 252 (838)
.++|.|++|+|+|++|++|+ |+++++|++.++ +....+.+|. ..|++++|+||
T Consensus 64 ~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 134 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG--------SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 134 (393)
T ss_dssp SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC--------CEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred CCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC--------CEEEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence 78999999999999999987 789999999887 4555555553 24999999999
Q ss_pred CC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-
Q 003217 253 GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG- 330 (838)
Q Consensus 253 G~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s- 330 (838)
|+ |++|+.|++|+|||+.+++....+ .+| ...+.++++.+++..+++++
T Consensus 135 g~~l~s~~~d~~i~iwd~~~~~~~~~~-------------------~~h----------~~~v~~~~~~p~~~~l~s~s~ 185 (393)
T 1erj_A 135 GKFLATGAEDRLIRIWDIENRKIVMIL-------------------QGH----------EQDIYSLDYFPSGDKLVSGSG 185 (393)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEE-------------------CCC----------SSCEEEEEECTTSSEEEEEET
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEE-------------------ccC----------CCCEEEEEEcCCCCEEEEecC
Confidence 98 789999999999999765432222 122 45678888888888888877
Q ss_pred CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEe
Q 003217 331 FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA 410 (838)
Q Consensus 331 ~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~ 410 (838)
|++|++||++++++..++..+
T Consensus 186 d~~v~iwd~~~~~~~~~~~~~----------------------------------------------------------- 206 (393)
T 1erj_A 186 DRTVRIWDLRTGQCSLTLSIE----------------------------------------------------------- 206 (393)
T ss_dssp TSEEEEEETTTTEEEEEEECS-----------------------------------------------------------
T ss_pred CCcEEEEECCCCeeEEEEEcC-----------------------------------------------------------
Confidence 689999999998875544211
Q ss_pred ccCccccCCCceEEEEEcC-CCc-EEEEECCCeEEEEcC-CCCeeeEe-------ecCCccEEEEEE--cCCEEEEEeeC
Q 003217 411 AKGGFGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDF-------QYLPFAVQCLCT--FGSQIWVGYMN 478 (838)
Q Consensus 411 ~~g~~~~~~~~v~ala~S~-dg~-l~Sgs~DgtIrlWD~-~g~~l~tl-------~~H~~~V~sls~--dG~~LasGs~D 478 (838)
..+.+++++| ++. +++|+.|++|++||+ +++++..+ .+|...|+++++ +|++|++|+.|
T Consensus 207 ---------~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d 277 (393)
T 1erj_A 207 ---------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277 (393)
T ss_dssp ---------SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ---------CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 1133566777 665 789999999999999 68887777 579999999976 68899999999
Q ss_pred CeEEEEeCCC-------------cccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCC
Q 003217 479 GIVQVLDLEG-------------NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 479 gtIrlWD~~g-------------~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
++|+|||+.. .+...+.+|.+.|.++++ ++++++|++.|++|++||+.+..+
T Consensus 278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~ 344 (393)
T 1erj_A 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 344 (393)
T ss_dssp SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE
T ss_pred CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 9999999752 345678899999999985 678999999999999999877554
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-28 Score=257.47 Aligned_cols=276 Identities=15% Similarity=0.134 Sum_probs=199.0
Q ss_pred eEEEEecC-CEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 003217 135 LRTIVCTE-EQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (838)
Q Consensus 135 ~~~l~~~~-~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DG 213 (838)
+..|+-+. +.|.+|.|++|||||+.++..... +..+.| ...|.||+|+|++++|+||+.||
T Consensus 28 ~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~-----------------~~~~~~-~~~V~~v~~~~~~~~l~sgs~Dg 89 (318)
T 4ggc_A 28 LNLVDWSSGNVLAVALDNSVYLWSASSGDILQL-----------------LQMEQP-GEYISSVAWIKEGNYLAVGTSSA 89 (318)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEE-----------------EECCST-TCCEEEEEECTTSSEEEEEETTS
T ss_pred ceEEEECCCCEEEEEeCCEEEEEECCCCCEEEE-----------------EEecCC-CCeEEEEEECCCCCEEEEEECCC
Confidence 33444443 356668899999999987543321 222223 67899999999999999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEee
Q 003217 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (838)
+|++|++.++ +.+..+.+|...+.++.+. +. |++|+.++.+++|+..+....+..
T Consensus 90 ~v~iw~~~~~--------~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~-------------- 145 (318)
T 4ggc_A 90 EVQLWDVQQQ--------KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT-------------- 145 (318)
T ss_dssp EEEEEETTTT--------EEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE--------------
T ss_pred cEEEeecCCc--------eeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEE--------------
Confidence 9999999997 6788899999999876654 45 789999999999998654322110
Q ss_pred ceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccc
Q 003217 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDE 371 (838)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~ 371 (838)
+.+| ...+..+...+.+..+++++ +++|++||+++++...... .
T Consensus 146 ----~~~~----------~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~----------------- 190 (318)
T 4ggc_A 146 ----LSGH----------SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----Q----------------- 190 (318)
T ss_dssp ----EECC----------SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS----E-----------------
T ss_pred ----EcCc----------cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce----e-----------------
Confidence 0111 34566777777888888776 6799999998765311000 0
Q ss_pred eeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc----EEEEECCCeEEEEcC
Q 003217 372 FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM----IWTGGANGLLLQWDP 447 (838)
Q Consensus 372 ~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~----l~Sgs~DgtIrlWD~ 447 (838)
. ...+...|.++++++++. +++++.+++|++||.
T Consensus 191 ------~------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~ 228 (318)
T 4ggc_A 191 ------T------------------------------------FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228 (318)
T ss_dssp ------E------------------------------------ECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEET
T ss_pred ------e------------------------------------ecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEec
Confidence 0 011222344555555442 246678899999999
Q ss_pred C-CCeeeEeecCCccEEEEEE--cCCEEEEEe--eCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCC
Q 003217 448 N-GNRLQDFQYLPFAVQCLCT--FGSQIWVGY--MNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGG 519 (838)
Q Consensus 448 ~-g~~l~tl~~H~~~V~sls~--dG~~LasGs--~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~Dgt 519 (838)
. +..... ..|...|.++.+ +++.+++++ .|++|+|||+. ++++.++.+|.+.|++|++ |+++|+|+|.|++
T Consensus 229 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~ 307 (318)
T 4ggc_A 229 CSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 307 (318)
T ss_dssp TTCCEEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred cccccccc-ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence 4 454444 456667776644 677766554 79999999987 7899999999999999985 7889999999999
Q ss_pred eeeeecCCCCC
Q 003217 520 IRGWNVTSPGP 530 (838)
Q Consensus 520 IrlWdl~s~~~ 530 (838)
||+||+...+|
T Consensus 308 v~iWd~~~~dP 318 (318)
T 4ggc_A 308 LRLWRCFELDP 318 (318)
T ss_dssp EEEECCSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999876554
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=268.09 Aligned_cols=304 Identities=12% Similarity=0.136 Sum_probs=216.1
Q ss_pred eeEEEEec-----CC-EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC----
Q 003217 134 FLRTIVCT-----EE-QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA---- 202 (838)
Q Consensus 134 ~~~~l~~~-----~~-~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d---- 202 (838)
.+.+++.. +. .+++ +.++.|++||+.+...... ...+....+ ...|.|++|+|+
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--------------~~~~~~~~~-~~~v~~~~~~~~~~~~ 84 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--------------LQSYVDADA-DENFYTCAWTYDSNTS 84 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--------------EEEEECSCT-TCCEEEEEEEECTTTC
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--------------eeeccccCC-CCcEEEEEeccCCCCC
Confidence 45666665 23 4554 5688999999975433211 000111112 578999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec-CCC-EEEeeCCCcEEEEECCCcceeeecCC
Q 003217 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 203 g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
+++|++|+.||+|++||+.++ +....+.+|.++|++++|+| ++. |++|+.||+|++||+.+++....+..
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPITM--------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp CEEEEEEETTCEEEEECTTTC--------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCEEEEecCCCEEEEEEchhc--------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 679999999999999999987 67788999999999999999 787 78999999999999976543322210
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeee
Q 003217 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (838)
Q Consensus 281 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (838)
+.++ ...+.++++++++..+++++ ++.|++||+++++.+..+... ..
T Consensus 157 ----------------~~~~----------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~ 204 (366)
T 3k26_A 157 ----------------VEGH----------RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES------YD 204 (366)
T ss_dssp ----------------TTSC----------SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHH------HT
T ss_pred ----------------cccc----------cCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccccee------EE
Confidence 0111 45688888888888888876 679999999988764433220 01
Q ss_pred cccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECC
Q 003217 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGAN 439 (838)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~D 439 (838)
+++........ +.. ..... ......|...|.+++++ +..+++++.|
T Consensus 205 ~~~~~~~~~~~-----------------~~~----------~~~~~------~~~~~~~~~~v~~~~~~-~~~l~~~~~d 250 (366)
T 3k26_A 205 YNPNKTNRPFI-----------------SQK----------IHFPD------FSTRDIHRNYVDCVRWL-GDLILSKSCE 250 (366)
T ss_dssp CCGGGCSSCCC-----------------CEE----------ECCCS------EEECSSCSSCCCEEEEE-TTEEEEECSS
T ss_pred ecCCCCccccc-----------------cee----------eccCc------cccccCCcceEEEEEEc-CCEEEEEecC
Confidence 11100000000 000 00000 00123466778888888 5578999999
Q ss_pred CeEEEEcC-CCCe--------------eeEeecCCccEEEE--EEc--CCEEEEEeeCCeEEEEeCC-Ccc----ccccc
Q 003217 440 GLLLQWDP-NGNR--------------LQDFQYLPFAVQCL--CTF--GSQIWVGYMNGIVQVLDLE-GNL----LGGWV 495 (838)
Q Consensus 440 gtIrlWD~-~g~~--------------l~tl~~H~~~V~sl--s~d--G~~LasGs~DgtIrlWD~~-g~~----i~~l~ 495 (838)
+.|++||+ ++++ +..+.+|...|+++ +++ |++|++|+.||.|++||+. +++ +..+.
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 330 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT 330 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC
T ss_pred CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc
Confidence 99999998 5543 78888899998877 567 9999999999999999987 443 34788
Q ss_pred cc--ccCEEEEEe--CCCEEEEEcCCCCeeeeecC
Q 003217 496 AH--SSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 496 gH--~~~V~sla~--dg~~l~S~S~DgtIrlWdl~ 526 (838)
+| ...|.++++ ++++|++++.|++|++||+.
T Consensus 331 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 331 HHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 88 799999985 78899999999999999974
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=258.84 Aligned_cols=280 Identities=12% Similarity=0.093 Sum_probs=217.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|.|++|+|++++|++|+.||.|++||+.++ +....+.+|.+.|++++|+|+++ |++++.|++|++||+
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--------ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--------hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 889999999999999999999999999999987 67788999999999999999998 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC------CcEEEEeccCcc
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF------LSFALWDARTRE 343 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~------~tI~lWD~~tg~ 343 (838)
.+++....+. ....+.++++++++..+++++. +.|++||+.++.
T Consensus 104 ~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~ 153 (369)
T 3zwl_B 104 SNGQCVATWK------------------------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS 153 (369)
T ss_dssp TTCCEEEEEE------------------------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred CCCcEEEEee------------------------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence 7654322211 1345777888888888877764 689999998764
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc---C----ccc
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK---G----GFG 416 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~---g----~~~ 416 (838)
....+..... .. ...............+.+.+++..++++..++..+++.. + .+.
T Consensus 154 ~~~~~~~~~~-------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 215 (369)
T 3zwl_B 154 ATHELTKVSE-------EP-----------IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID 215 (369)
T ss_dssp TTCCEEEECS-------SC-----------SEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE
T ss_pred cceeeccccc-------ce-----------eeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe
Confidence 3221111000 00 000111111113445667777777788888887666652 1 234
Q ss_pred cCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCC-------------
Q 003217 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNG------------- 479 (838)
Q Consensus 417 ~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~Dg------------- 479 (838)
.+...|.+++++|++. |++++.|++|++||+ +++++..+. +...+.++++ +++++++|+.++
T Consensus 216 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 294 (369)
T 3zwl_B 216 LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGK 294 (369)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------
T ss_pred cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCc
Confidence 5778899999999997 789999999999999 688888887 6778888765 688999999888
Q ss_pred -eEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 480 -IVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 480 -tIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
.|++||.. ++++..+.+|...|.++++ +++++++++.|++|++|++..
T Consensus 295 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 295 FEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred ceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 89999987 7889999999999999985 788999999999999999865
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-28 Score=267.20 Aligned_cols=280 Identities=11% Similarity=0.072 Sum_probs=192.0
Q ss_pred CCCCcCcccccCCCccc--ccCcccccCCCCCCCceeecCCCCCccccCceeEEEEecCC-EEE-EecCCCEEEEeCCCC
Q 003217 86 SSSSLPEYIGKGGDIPM--FKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEE-QLW-AGGENGLRVWNLKEL 161 (838)
Q Consensus 86 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~-~g~d~~vrvWd~~~~ 161 (838)
.++|-+++|..++...+ ....++.+-.+...+..++... ..+ -...+.+++...+ .++ ++.|++|||||+.+.
T Consensus 49 ~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~-~~~--~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~ 125 (357)
T 4g56_B 49 RYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA-GVQ--TEAGVTDVAWVSEKGILVASDSGAVELWEILEK 125 (357)
T ss_dssp EECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE-EEE--CSSCEEEEEEETTTEEEEEETTSCEEEC-----
T ss_pred EECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc-cCC--CCCCEEEEEEcCCCCEEEEECCCEEEEeecccc
Confidence 46888899988776432 2233444333322221111111 111 1123666665533 444 477999999999765
Q ss_pred ccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccc
Q 003217 162 YDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR 241 (838)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~ 241 (838)
..... ..+....| .++|.||+|+|+|++|+||+.||+|++||+.++ +....+++|.
T Consensus 126 ~~~~~---------------~~~~~~~h-~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~--------~~~~~~~~h~ 181 (357)
T 4g56_B 126 ESLLV---------------NKFAKYEH-DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK--------AVLKSYNAHS 181 (357)
T ss_dssp ---CC---------------CCEEECCC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTT--------EEEEEECCCS
T ss_pred ceeEE---------------EeeccCCC-CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------cEEEEEcCCC
Confidence 43211 11222234 789999999999999999999999999999987 6788899999
Q ss_pred ccEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEE
Q 003217 242 GPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS 319 (838)
Q Consensus 242 ~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las 319 (838)
+.|++|+|++++. +++++.|++|++||+.+++........ .+ ...+.++++
T Consensus 182 ~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~-----------------~~----------~~~v~~v~~ 234 (357)
T 4g56_B 182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC-----------------AS----------DTIPTSVTW 234 (357)
T ss_dssp SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT-----------------TC----------CSCEEEEEE
T ss_pred CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec-----------------cc----------cccccchhh
Confidence 9999999999875 789999999999999775432211110 00 234667777
Q ss_pred cCCC-CEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcc
Q 003217 320 DHSR-AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRN 397 (838)
Q Consensus 320 ~~~~-~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~ 397 (838)
++++ ..+++++ +++|++||+++++++.++.+
T Consensus 235 sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~----------------------------------------------- 267 (357)
T 4g56_B 235 HPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV----------------------------------------------- 267 (357)
T ss_dssp CTTSTTEEEEEESSSCEEEEESSCGGGCEEECC-----------------------------------------------
T ss_pred hhcccceEEEeecccceeEEECCCCcEeEEEec-----------------------------------------------
Confidence 7654 4666665 67899999988776544422
Q ss_pred eeeecCCcEEEEeccCccccCCCceEEEEEcCCC-c-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE---cCCE
Q 003217 398 AIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-M-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT---FGSQ 471 (838)
Q Consensus 398 ~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg-~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~---dG~~ 471 (838)
+...|.+++|+|++ . |++|+.|++|++||+ ++++++.+ +|.+.|++|++ ++++
T Consensus 268 --------------------~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~ 326 (357)
T 4g56_B 268 --------------------HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSK 326 (357)
T ss_dssp --------------------CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTE
T ss_pred --------------------cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCE
Confidence 22345678898886 3 789999999999999 57776655 89999999975 5789
Q ss_pred EEEEeeCCeEEEEeCC
Q 003217 472 IWVGYMNGIVQVLDLE 487 (838)
Q Consensus 472 LasGs~DgtIrlWD~~ 487 (838)
|++|+.||+|++||+.
T Consensus 327 l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 327 FTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EEEEETTSCEEEEECC
T ss_pred EEEEcCCCeEEEEECC
Confidence 9999999999999985
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=258.79 Aligned_cols=239 Identities=10% Similarity=0.093 Sum_probs=187.5
Q ss_pred ceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeee
Q 003217 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (838)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~ 310 (838)
+...+|++|.+.|++|+|+|+|+ |+||+.||+|+|||++++.....+. .+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~-------------------~~---------- 54 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ-------------------VT---------- 54 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-------------------CC----------
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee-------------------cc----------
Confidence 45678999999999999999998 7899999999999997754322211 11
Q ss_pred cCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeee
Q 003217 311 TSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSF 389 (838)
Q Consensus 311 s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~ 389 (838)
...+.++.+.+++..+++++ |++|++||+.+++++..+.+|...+..+.
T Consensus 55 ~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~------------------------------ 104 (304)
T 2ynn_A 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA------------------------------ 104 (304)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE------------------------------
T ss_pred CCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEE------------------------------
Confidence 34577788888888888877 57999999999999998887765443333
Q ss_pred eEeecCcceeeecCCcEEEEec--c-----CccccCCCceEEEEEcC-CCc-EEEEECCCeEEEEcC-CCCeeeEee-cC
Q 003217 390 GFFQRSRNAIMGAADAVRRVAA--K-----GGFGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDFQ-YL 458 (838)
Q Consensus 390 ~~~~~~~~~~~g~~~~v~~v~~--~-----g~~~~~~~~v~ala~S~-dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~-~H 458 (838)
|.+.+..+++|+.|+..++|. . ..+.+|...|.+++|+| ++. +++|+.|++|++||+ ++.+...+. +|
T Consensus 105 -~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~ 183 (304)
T 2ynn_A 105 -VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183 (304)
T ss_dssp -ECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCC
T ss_pred -EcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCC
Confidence 334444456666666666654 1 13456888999999998 554 899999999999999 566555554 56
Q ss_pred CccEEEEEE----cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCC
Q 003217 459 PFAVQCLCT----FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 459 ~~~V~sls~----dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
...|.++.+ ++.+|++|+.|++|++||++ ++++.++.+|...|.++++ ++.+++|+|.|++||+||+.++..
T Consensus 184 ~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 678888754 56799999999999999997 7889999999999999885 677899999999999999876543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-27 Score=260.54 Aligned_cols=270 Identities=15% Similarity=0.183 Sum_probs=199.2
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+.+++.. +..|.+ +.|++|+|||..+..... ....+ ...|.+++|+|+|..|++|+
T Consensus 66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~-------------------~~~~~-~~~v~~~~~sp~g~~lasg~ 125 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH-------------------AVTMP-CTWVMACAYAPSGCAIACGG 125 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-------------------EEECS-SSCCCEEEECTTSSEEEEES
T ss_pred eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce-------------------EEecC-CCCEEEEEECCCCCEEEEee
Confidence 45566654 446665 569999999986543221 11123 67899999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
.|++|++|++..... .........+.+|.+.|.+++|+|++. |+|||.|++|++||+++++....+.
T Consensus 126 ~d~~i~v~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~---------- 193 (354)
T 2pbi_B 126 LDNKCSVYPLTFDKN--ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH---------- 193 (354)
T ss_dssp TTSEEEEEECCCCTT--CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE----------
T ss_pred CCCCEEEEEEecccc--ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc----------
Confidence 999999999875310 111234567789999999999999997 8999999999999997754332221
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcC--CCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~--~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (838)
+| ...+.++.+.+ ++..+++++ |++|++||+++++++.++..|...+..+.
T Consensus 194 ---------~h----------~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~------- 247 (354)
T 2pbi_B 194 ---------GH----------GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVR------- 247 (354)
T ss_dssp ---------CC----------SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE-------
T ss_pred ---------CC----------CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEE-------
Confidence 12 33566666654 356777776 68999999999999988877655433333
Q ss_pred ccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc--C----ccc--cCCCceEEEEEcCCCc-EEEEE
Q 003217 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--G----GFG--DDNRRTEALTTSIDGM-IWTGG 437 (838)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g----~~~--~~~~~v~ala~S~dg~-l~Sgs 437 (838)
|.+++..++++..++..++|.. + .+. .+...+.+++|+|+|. |++|+
T Consensus 248 ------------------------~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~ 303 (354)
T 2pbi_B 248 ------------------------YYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY 303 (354)
T ss_dssp ------------------------ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred ------------------------EeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE
Confidence 3333444455566665555541 1 111 1234678899999998 78999
Q ss_pred CCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEe
Q 003217 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 438 ~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (838)
.|++|++||+ +++++.++.+|.+.|+++++ +|++|++|+.|++|+||+
T Consensus 304 ~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 304 NDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999 89999999999999999875 789999999999999996
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-27 Score=257.86 Aligned_cols=243 Identities=17% Similarity=0.166 Sum_probs=180.9
Q ss_pred CCCeEEEEE-----cC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCc
Q 003217 191 VSSVMCMVG-----DE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG 263 (838)
Q Consensus 191 ~~~V~~la~-----s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt 263 (838)
..+|.|++| ++ ++++|+||+.|++|++||+..+... .........+.+|..+|++++|+|++. |+|||.|++
T Consensus 21 ~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~-~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~ 99 (343)
T 2xzm_R 21 SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN-GYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKT 99 (343)
T ss_dssp SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS-SBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSE
T ss_pred hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc-cccccccchhccCCCceEEEEECCCCCEEEEEcCCCc
Confidence 789999999 76 8999999999999999998764100 000133567899999999999999998 689999999
Q ss_pred EEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCc
Q 003217 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR 342 (838)
Q Consensus 264 IrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg 342 (838)
||+||+.+++....+. +| ...+.++++++++..+++++ +++|++||+...
T Consensus 100 v~lwd~~~~~~~~~~~-------------------~h----------~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~ 150 (343)
T 2xzm_R 100 LRLWDLRTGTTYKRFV-------------------GH----------QSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150 (343)
T ss_dssp EEEEETTSSCEEEEEE-------------------CC----------CSCEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred EEEEECCCCcEEEEEc-------------------CC----------CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence 9999997754322221 12 45688899999888888877 689999998733
Q ss_pred cEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCce
Q 003217 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (838)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (838)
....+.. ...|...|
T Consensus 151 -~~~~~~~----------------------------------------------------------------~~~~~~~v 165 (343)
T 2xzm_R 151 -CKFSSAE----------------------------------------------------------------KENHSDWV 165 (343)
T ss_dssp -EEEECCT----------------------------------------------------------------TTSCSSCE
T ss_pred -ceeeeec----------------------------------------------------------------ccCCCcee
Confidence 2211110 00112223
Q ss_pred EEEEEcCCC-----------cEEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-C
Q 003217 423 EALTTSIDG-----------MIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-G 488 (838)
Q Consensus 423 ~ala~S~dg-----------~l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g 488 (838)
.+++++|++ .+++|+.|++|++||.+++++.++.+|...|+++++ +|++|++|+.||+|+|||+. .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~ 245 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL 245 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 334444432 489999999999999888888999999999999876 78999999999999999984 3
Q ss_pred c-ccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCC
Q 003217 489 N-LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 489 ~-~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
. ....+ .|...|.++++ +++++ +++.|++|++|++.+...
T Consensus 246 ~~~~~~~-~~~~~v~~v~~sp~~~~l-a~~~d~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 246 TYPQREF-DAGSTINQIAFNPKLQWV-AVGTDQGVKIFNLMTQSK 288 (343)
T ss_dssp SSCSEEE-ECSSCEEEEEECSSSCEE-EEEESSCEEEEESSSCCS
T ss_pred cccceee-cCCCcEEEEEECCCCCEE-EEECCCCEEEEEeCCCCC
Confidence 3 34433 45567999986 44444 567799999999876543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=260.56 Aligned_cols=240 Identities=13% Similarity=0.133 Sum_probs=182.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-cc-ccccEEEEEEecCCC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QA-HRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l-~g-H~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (838)
..+|.|++++|+ +|+||+.||+|++||+.++. ......+ .+ |.++|++|+|+|+|+ |+|||.|++||||
T Consensus 14 ~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~------~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw 85 (330)
T 2hes_X 14 KEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD------FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85 (330)
T ss_dssp SSCEEEEEEETT--EEEEEESSSCEEEEECSSSC------CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCceeeeccCCC--EEEEEcCCCEEEEEEecCCC------eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 789999999986 99999999999999998741 1334445 44 999999999999998 7899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCc-c--
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR-E-- 343 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg-~-- 343 (838)
+++...... . ...... .+.+| ...|.++++++++..+++++ |++|++||+.+. +
T Consensus 86 ~~~~~~~~~-~--~~~~~~---------~~~~h----------~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 86 AKEESADRT-F--EMDLLA---------IIEGH----------ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp EC--------C--CCEEEE---------EEC--------------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC
T ss_pred EcccCcCcc-c--cceeEE---------EEcCC----------CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe
Confidence 985421100 0 000000 11222 45788999999999998887 689999998532 1
Q ss_pred -EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCce
Q 003217 344 -LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (838)
Q Consensus 344 -~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (838)
++.+ +..|...|
T Consensus 144 ~~~~~-------------------------------------------------------------------~~~h~~~v 156 (330)
T 2hes_X 144 ECISV-------------------------------------------------------------------LQEHSQDV 156 (330)
T ss_dssp EEEEE-------------------------------------------------------------------ECCCSSCE
T ss_pred EEEEE-------------------------------------------------------------------eccCCCce
Confidence 1111 22345567
Q ss_pred EEEEEcCCCc-EEEEECCCeEEEEcC-CC--CeeeEeecCCccEEEEEE--c--CCEEEEEeeCCeEEEEeCCC------
Q 003217 423 EALTTSIDGM-IWTGGANGLLLQWDP-NG--NRLQDFQYLPFAVQCLCT--F--GSQIWVGYMNGIVQVLDLEG------ 488 (838)
Q Consensus 423 ~ala~S~dg~-l~Sgs~DgtIrlWD~-~g--~~l~tl~~H~~~V~sls~--d--G~~LasGs~DgtIrlWD~~g------ 488 (838)
.+++++|++. |++|+.|++|++||. ++ +++.++.+|...|.++++ + +.+|++|+.|++|+|||+.+
T Consensus 157 ~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence 7889999887 899999999999998 55 688999999999999976 3 56899999999999999752
Q ss_pred ---cccccccc-cccCEEEEEe-CCCEEEEEcCCCCeeeeecCC
Q 003217 489 ---NLLGGWVA-HSSPVIKMAV-GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 489 ---~~i~~l~g-H~~~V~sla~-dg~~l~S~S~DgtIrlWdl~s 527 (838)
.+...+.+ |...|+++++ .+..++|++.|++|++|++..
T Consensus 237 ~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 237 QEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVD 280 (330)
T ss_dssp EEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEET
T ss_pred ceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCC
Confidence 34555655 9999999997 355899999999999999753
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-27 Score=301.36 Aligned_cols=374 Identities=14% Similarity=0.127 Sum_probs=247.6
Q ss_pred CCCcCcccccCCCcccccCcccccCCCCCCCceeecCCCCCccccCceeEEEEec--CCEEEE-ecCCCEEEEeCCCCcc
Q 003217 87 SSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYD 163 (838)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~ 163 (838)
+++-..++..||.+|. ++-+-.........+..|. ..+.+++.+ ++.|.+ +.|+.|+|||+.+...
T Consensus 623 ~s~~~~~l~s~~~d~~----i~vw~~~~~~~~~~~~~h~-------~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~ 691 (1249)
T 3sfz_A 623 FSQDGQRIASCGADKT----LQVFKAETGEKLLDIKAHE-------DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL 691 (1249)
T ss_dssp ECTTSSEEEEEETTSC----EEEEETTTCCEEEEECCCS-------SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred ECCCCCEEEEEeCCCe----EEEEECCCCCEEEEeccCC-------CCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce
Confidence 4566778887777664 2222222222222333331 345566654 445665 5689999999986543
Q ss_pred ccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccc
Q 003217 164 ESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR 241 (838)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~--dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~ 241 (838)
... + ..| ..+|.|++|+| ++.++++|+.||+|++||+.++ +....+.+|.
T Consensus 692 ~~~-----------------~--~~~-~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~--------~~~~~~~~h~ 743 (1249)
T 3sfz_A 692 VHT-----------------Y--DEH-SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK--------ECRNTMFGHT 743 (1249)
T ss_dssp EEE-----------------E--ECC-SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS--------SEEEEECCCS
T ss_pred EEE-----------------E--cCC-CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc--------chhheecCCC
Confidence 221 2 123 77999999999 5569999999999999999987 6778899999
Q ss_pred ccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeec-------------------------CCCceee----------
Q 003217 242 GPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSL-------------------------KPEERHT---------- 285 (838)
Q Consensus 242 ~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~-------------------------~~~~~~~---------- 285 (838)
++|++++|+|+|+ |++|+.||+|++||+.+......+ .+.....
T Consensus 744 ~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~ 823 (1249)
T 3sfz_A 744 NSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLL 823 (1249)
T ss_dssp SCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEE
T ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEE
Confidence 9999999999998 789999999999998654321110 0000000
Q ss_pred --------------------eEEEE------------eec--eee---------cccce-eccceee-------------
Q 003217 286 --------------------AALIV------------ERS--YID---------LRSHL-SVNGFSS------------- 308 (838)
Q Consensus 286 --------------------~~~~~------------~~s--~~~---------l~~~~-~~~~~~~------------- 308 (838)
..+.. +.. .++ +.+|. .+..+..
T Consensus 824 ~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 824 FDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp EETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCC
Confidence 00000 000 000 00000 0000000
Q ss_pred -------------------------------------------------------eecCCeEEEEEcCCCCEEEEeC-CC
Q 003217 309 -------------------------------------------------------ILTSDIKNLLSDHSRAKVWSAG-FL 332 (838)
Q Consensus 309 -------------------------------------------------------~~s~~v~~las~~~~~~V~s~s-~~ 332 (838)
.+...+.++++++++..+++++ ++
T Consensus 904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g 983 (1249)
T 3sfz_A 904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG 983 (1249)
T ss_dssp SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTS
T ss_pred CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCC
Confidence 1122456666667677666665 46
Q ss_pred cEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec-
Q 003217 333 SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA- 411 (838)
Q Consensus 333 tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~- 411 (838)
.|++||+.+++.+..+.+|...+ ..+.|.+++...+++..++..++|.
T Consensus 984 ~i~i~d~~~~~~~~~~~~h~~~v-------------------------------~~l~~s~dg~~l~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A 984 AIKIIELPNNRVFSSGVGHKKAV-------------------------------RHIQFTADGKTLISSSEDSVIQVWNW 1032 (1249)
T ss_dssp CCEEEETTTTSCEEECCCCSSCC-------------------------------CCEEECSSSSCEEEECSSSBEEEEET
T ss_pred CEEEEEcCCCceeeecccCCCce-------------------------------EEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 78888888777766655443322 2344555555566666666666654
Q ss_pred -cC---ccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEE
Q 003217 412 -KG---GFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVL 484 (838)
Q Consensus 412 -~g---~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlW 484 (838)
.+ .+..+...+.++++++++.+++++.|++|++||+ ++++++++.+|...|.++++ +|++|++|+.|++|++|
T Consensus 1033 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iw 1112 (1249)
T 3sfz_A 1033 QTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112 (1249)
T ss_dssp TTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEE
T ss_pred CCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 11 2345677788888888888888888888888888 78888888888888887754 67888888888888888
Q ss_pred eCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCC
Q 003217 485 DLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 485 D~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
|+. ++++..+.+|.+.|.++++ +++++++++.||+|++||+.+..+
T Consensus 1113 d~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A 1113 SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp CSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCC
T ss_pred ECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCce
Confidence 876 6788888888888888874 788888888888888888776543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=261.31 Aligned_cols=277 Identities=14% Similarity=0.119 Sum_probs=202.6
Q ss_pred eeEEEEec--CCEEEEec-----CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC---C
Q 003217 134 FLRTIVCT--EEQLWAGG-----ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA---S 203 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~g~-----d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d---g 203 (838)
.+.+++.. +..++++. |+.|++||+.+..... .....+ ..+|.|++|+|+ +
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~------------------~~~~~~-~~~v~~~~~~~~~~~~ 80 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL------------------LREIEK-AKPIKCGTFGATSLQQ 80 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE------------------EEEEEE-SSCEEEEECTTCCTTT
T ss_pred ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc------------------eeeecc-cCcEEEEEEcCCCCCC
Confidence 46666665 33565533 8999999997643211 111123 779999999998 6
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEE------EecCCC-EEEeeCCCcEEEEECCCcce-e
Q 003217 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLC------ISSYGD-LWSGSEGGGIKIWPWEAIEK-A 275 (838)
Q Consensus 204 ~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~sla------fs~dG~-L~SgS~DgtIrvWd~~~~~~-~ 275 (838)
++|++|+.||+|++||+.++. .....+.+|.+.|+++. |+|+++ |++|+.|++|++||+.+... .
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~ 153 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAPE-------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPV 153 (357)
T ss_dssp CCEEEEETTSCEEEECTTSCS-------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCS
T ss_pred ceEEEecCCCeEEEEeCCCCC-------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcc
Confidence 999999999999999999862 26778899999999995 467887 78999999999999977542 2
Q ss_pred eecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEE----EcCCCCEEEEeC-CCcEEEEeccCccEEEEEec
Q 003217 276 LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL----SDHSRAKVWSAG-FLSFALWDARTRELLKVFNI 350 (838)
Q Consensus 276 ~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~la----s~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~ 350 (838)
..+..... + ....+.+++ .++++..+++++ ++.|++||+++++++....
T Consensus 154 ~~~~~~~~----------------~---------~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~- 207 (357)
T 3i2n_A 154 ANMEPVQG----------------E---------NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN- 207 (357)
T ss_dssp EEECCCTT----------------S---------CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred eeccccCC----------------C---------CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC-
Confidence 22111100 0 012455555 456677777776 5799999999877532211
Q ss_pred CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC-
Q 003217 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI- 429 (838)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~- 429 (838)
+...+.+++++|
T Consensus 208 -------------------------------------------------------------------~~~~v~~~~~~~~ 220 (357)
T 3i2n_A 208 -------------------------------------------------------------------IKNGVCSLEFDRK 220 (357)
T ss_dssp -------------------------------------------------------------------CSSCEEEEEESCS
T ss_pred -------------------------------------------------------------------CCCceEEEEcCCC
Confidence 112345677887
Q ss_pred --CCc-EEEEECCCeEEEEcC-CCCeeeEee-----cCCccEEEEEE--cCC-EEEEEeeCCeEEEEeCCC---------
Q 003217 430 --DGM-IWTGGANGLLLQWDP-NGNRLQDFQ-----YLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLEG--------- 488 (838)
Q Consensus 430 --dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~-----~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~g--------- 488 (838)
++. +++|+.||.|++||+ +++++..+. +|...|+++++ +|+ +|++|+.||.|++||+..
T Consensus 221 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 300 (357)
T 3i2n_A 221 DISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS 300 (357)
T ss_dssp SSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCT
T ss_pred CCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccC
Confidence 555 899999999999999 566555554 89999999865 566 899999999999999752
Q ss_pred -----------cccccccccccCEEEEEe--CCCEEE-EEcCCCCeeeeecCCCC
Q 003217 489 -----------NLLGGWVAHSSPVIKMAV--GAGYIF-TLANHGGIRGWNVTSPG 529 (838)
Q Consensus 489 -----------~~i~~l~gH~~~V~sla~--dg~~l~-S~S~DgtIrlWdl~s~~ 529 (838)
+++..+.+|...|.++++ ++++++ |++.|++|++|++.+..
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 301 EGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp TSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 357788999999999985 677887 89999999999987643
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-27 Score=258.48 Aligned_cols=272 Identities=11% Similarity=0.102 Sum_probs=204.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..+|.|++|+|++++|++|+.||+|++||+.++. ++....+.+|...|++++|+|+|+ |++|+.|++|++||+
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE------EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc------EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 7799999999999999999999999999998851 126778899999999999999998 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccE---E
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL---L 345 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~---l 345 (838)
.+.+...... +..+ ...+.++++++++..+++++ ++.|++||+.+++. .
T Consensus 82 ~~~~~~~~~~-----------------~~~~----------~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 134 (372)
T 1k8k_C 82 KGRTWKPTLV-----------------ILRI----------NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC 134 (372)
T ss_dssp ETTEEEEEEE-----------------CCCC----------SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred CCCeeeeeEE-----------------eecC----------CCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee
Confidence 6643211110 0011 34678888888888888877 57899999998762 2
Q ss_pred EEE-ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec-------------
Q 003217 346 KVF-NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA------------- 411 (838)
Q Consensus 346 ~~l-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~------------- 411 (838)
..+ ..|...+.. +.+.+++..++++..++..+++.
T Consensus 135 ~~~~~~~~~~i~~-------------------------------~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 183 (372)
T 1k8k_C 135 KHIKKPIRSTVLS-------------------------------LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 183 (372)
T ss_dssp EEECTTCCSCEEE-------------------------------EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCB
T ss_pred eeeecccCCCeeE-------------------------------EEEcCCCCEEEEEcCCCCEEEEEccccccccccccc
Confidence 222 222222222 33333333444444444433332
Q ss_pred -------cC----ccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEe
Q 003217 412 -------KG----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGY 476 (838)
Q Consensus 412 -------~g----~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs 476 (838)
.+ .+..|...+.+++++|++. |++++.|++|++||+ +++++..+..|...|.++++ +|++|++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 262 (372)
T 1k8k_C 184 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG- 262 (372)
T ss_dssp TTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-
T ss_pred ccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-
Confidence 01 2335677899999999986 899999999999999 79999999999999998865 67788877
Q ss_pred eCCeEEEEeCCC--c---cc------------------------------------ccc-cccccCEEEEE---eCC---
Q 003217 477 MNGIVQVLDLEG--N---LL------------------------------------GGW-VAHSSPVIKMA---VGA--- 508 (838)
Q Consensus 477 ~DgtIrlWD~~g--~---~i------------------------------------~~l-~gH~~~V~sla---~dg--- 508 (838)
.|+.|++||+.. . ++ ..+ .+|.+.|++++ .+|
T Consensus 263 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~ 342 (372)
T 1k8k_C 263 HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC 342 (372)
T ss_dssp TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSC
T ss_pred eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcce
Confidence 899999999754 1 10 233 59999999997 356
Q ss_pred CEEEEEcCCCCeeeeecCC
Q 003217 509 GYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 509 ~~l~S~S~DgtIrlWdl~s 527 (838)
++++|++.||+|++|++.+
T Consensus 343 ~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 343 SQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp SEEEEEETTSEEEEEEHHH
T ss_pred eeEEEecCCCceEEEEecC
Confidence 8999999999999999754
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-27 Score=249.88 Aligned_cols=266 Identities=17% Similarity=0.149 Sum_probs=205.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|.|++| +++++|++|+.||+|++||+.++ +....+.+|.+.|++++|+|+++ |++|+.|+.|++|++
T Consensus 18 ~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 88 (313)
T 3odt_A 18 DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ--------WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPL 88 (313)
T ss_dssp SSCEEEEEE-EETTEEEEEETTSEEEEEEESSS--------EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC--------EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence 789999999 89999999999999999999886 56777889999999999999998 789999999999998
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
....... ... .+.+| ...+.++.. ++..+++++ +++|++|| +++.+..+
T Consensus 89 ~~~~~~~-------~~~---------~~~~~----------~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~ 138 (313)
T 3odt_A 89 FATSGED-------PLY---------TLIGH----------QGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNL 138 (313)
T ss_dssp TCCTTSC-------C-C---------EECCC----------SSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEE
T ss_pred eecCCCC-------ccc---------chhhc----------ccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEec
Confidence 6532100 000 01111 345666666 345666665 68999999 66666666
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEee-cCcceeeecCCcEEEEeccC----cccc-CCCce
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAADAVRRVAAKG----GFGD-DNRRT 422 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~-~~~~~~~g~~~~v~~v~~~g----~~~~-~~~~v 422 (838)
..+...... +.+.+ .+...+++..++..+++..+ .+.. +...+
T Consensus 139 ~~~~~~v~~-------------------------------~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i 187 (313)
T 3odt_A 139 QAHNASVWD-------------------------------AKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVV 187 (313)
T ss_dssp ECCSSCEEE-------------------------------EEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCE
T ss_pred ccCCCceeE-------------------------------EEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccE
Confidence 655433222 22222 23344555555555555421 2333 67789
Q ss_pred EEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccccccccc
Q 003217 423 EALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (838)
Q Consensus 423 ~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~ 498 (838)
.+++++|++.+++|+.|++|++||+ +++++..+.+|...|+++++ +| +|++|+.||.|++||++ ++++..+.+|.
T Consensus 188 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 266 (313)
T 3odt_A 188 RHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA 266 (313)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS
T ss_pred EEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC
Confidence 9999999999999999999999999 78999999999999999987 45 79999999999999987 78899999999
Q ss_pred cCEEEEEe--CCCEEEEEcCCCCeeeeecCCC
Q 003217 499 SPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 499 ~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
..|.++++ +++ +++++.|+.|++|++...
T Consensus 267 ~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 267 ISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp SCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred ceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 99999986 555 778999999999998754
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=294.37 Aligned_cols=168 Identities=10% Similarity=0.067 Sum_probs=117.5
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+.+++.+ +..|.+ +.|++|||||..+..... . ..+..+|.+|+|+| |++|+||+
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~--------------------~-~~~~~~V~~l~fsp-g~~L~S~s 76 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI--------------------K-LEDRSAIKEMRFVK-GIYLVVIN 76 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE--------------------E-CSSCCCEEEEEEET-TTEEEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE--------------------E-cCCCCCEEEEEEcC-CCEEEEEE
Confidence 45666665 335555 458999999976532210 1 11266899999999 88999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
.|++|++||+.++ +.+..+. |.+.|++++|+|+|+ |++|+.||+|++||+.+.... .+......
T Consensus 77 ~D~~v~lWd~~~~--------~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~----- 141 (902)
T 2oaj_A 77 AKDTVYVLSLYSQ--------KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQ----- 141 (902)
T ss_dssp TTCEEEEEETTTC--------SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHH-----
T ss_pred CcCeEEEEECCCC--------cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceecccc-----
Confidence 9999999999987 5566664 778999999999998 789999999999999764321 10000000
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCC-CEEEEeC-CCcEEEEeccCccEEEEEecC
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLKVFNID 351 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~V~s~s-~~tI~lWD~~tg~~l~~l~~~ 351 (838)
.....+++| ...|.++++++.+ ..+++++ +++| +||++++++++++..+
T Consensus 142 --~~~~~~~~h----------~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~ 192 (902)
T 2oaj_A 142 --KSSFFPAAR----------LSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYE 192 (902)
T ss_dssp --HHHTCSSSC----------CCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCC
T ss_pred --ccccccccC----------CCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecc
Confidence 000011122 4467788888753 5666666 5678 9999999999888765
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=285.29 Aligned_cols=306 Identities=10% Similarity=-0.038 Sum_probs=194.2
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC------CCEEEEEeCCCcEEEEECC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA------SGVVWSGHRDGRIMCWKMN 221 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d------g~~LaSGs~DGtIrvWd~~ 221 (838)
+.|++|+|||+.+..... .....-..+ .+.|.+|+|+|+ +++||||+.||+||+||+.
T Consensus 180 s~D~tI~iWd~~~~~~~~---------------~~~~~l~~~-~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~ 243 (524)
T 2j04_B 180 KHSSCIQIFKMNTSTLHC---------------VKVQTIVHS-FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEII 243 (524)
T ss_dssp --CEEEEEEEEETTTCCE---------------EEEEEEEEC-CCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECC
T ss_pred CCCceEEEEEccCCCCCc---------------eEEEEEEec-CCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcC
Confidence 568999999986532110 000001122 678999999996 5799999999999999998
Q ss_pred CCccCCC---CCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecc
Q 003217 222 ARLLDSD---DGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (838)
Q Consensus 222 ~g~~~~~---~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 298 (838)
++.+... ...+....+.+|.++|++++|++++.|++||.||+|++||+.+...... .+.
T Consensus 244 ~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~------------------~~~ 305 (524)
T 2j04_B 244 DNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSF------------------YDQ 305 (524)
T ss_dssp CCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSE------------------EEE
T ss_pred CCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceE------------------Eee
Confidence 7521000 0011235788999999999999987799999999999999975422110 011
Q ss_pred cceeccceeeeecCCeEEE--EEcCCC-CEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceee
Q 003217 299 SHLSVNGFSSILTSDIKNL--LSDHSR-AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (838)
Q Consensus 299 ~~~~~~~~~~~~s~~v~~l--as~~~~-~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (838)
+| ...|.++ ++++++ ..+++++ |++|+|||+++++++.++.++...
T Consensus 306 ~H----------~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~-------------------- 355 (524)
T 2j04_B 306 VH----------DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG-------------------- 355 (524)
T ss_dssp CS----------SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC--------------------
T ss_pred cc----------cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc--------------------
Confidence 12 4467777 345555 6778877 689999999998876665433210
Q ss_pred EEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--c----CccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC
Q 003217 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP 447 (838)
Q Consensus 375 ~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~ 447 (838)
..+.++.|.+.+...+.+..++..+++. . .++.+|...|.+|+|+|+|. |+||+.|++|++||+
T Consensus 356 ---------~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 356 ---------SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp ---------CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred ---------CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 0011234555444455556665555554 1 13456888999999999997 799999999999999
Q ss_pred CCCeeeEeecC-----CccEEEEEE--cCCEEEEEeeCCeEEEEeCCCcccccccccccCEEEEEeCCC-----EEEEEc
Q 003217 448 NGNRLQDFQYL-----PFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAVGAG-----YIFTLA 515 (838)
Q Consensus 448 ~g~~l~tl~~H-----~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~dg~-----~l~S~S 515 (838)
.+++++.+..+ ...|.++++ +|+.+ ....+..+..|+.+|.++.++.+|...|++|+++++ .+++|+
T Consensus 427 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~ 505 (524)
T 2j04_B 427 ARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY-RIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSN 505 (524)
T ss_dssp CSSTTTCC------CCCCEEEECBCCSSSCEE-EECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEEC
T ss_pred hHhhccccccCccceeeeEEEEeccCCCCCeE-EccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhc
Confidence 66555443321 124666644 56644 222222233333457889999999999999997543 899999
Q ss_pred CCCCeeeeecCC
Q 003217 516 NHGGIRGWNVTS 527 (838)
Q Consensus 516 ~DgtIrlWdl~s 527 (838)
.||+||||++.-
T Consensus 506 ~~g~vrlw~l~~ 517 (524)
T 2j04_B 506 SAGLLTLEYLSL 517 (524)
T ss_dssp TTSEEEEEECSC
T ss_pred cCceEEEEEccc
Confidence 999999999764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-27 Score=261.46 Aligned_cols=284 Identities=11% Similarity=0.095 Sum_probs=212.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC----C---C-EEEeeCCC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY----G---D-LWSGSEGG 262 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d----G---~-L~SgS~Dg 262 (838)
.++|.|++|+| ++|++|+.||+|++|++.++. ....+.....+.+|..+|++++|+|+ | + |++|+.|+
T Consensus 16 ~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 16 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLD--NENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp SSCEEEEEECS--SEEEEEETTSEEEEEESBCCT--TCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred hcCeEEEEecC--CeEEEEcCCCEEEEEECCCcc--cccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 78999999998 899999999999999998861 01112357788999999999999999 8 6 78999999
Q ss_pred cEEEEECCCcce-----eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEc----CCCCE-EEEeC-C
Q 003217 263 GIKIWPWEAIEK-----ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD----HSRAK-VWSAG-F 331 (838)
Q Consensus 263 tIrvWd~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~----~~~~~-V~s~s-~ 331 (838)
+|++|++.+... ...+. .+... .....+.++++. +++.. +++++ +
T Consensus 92 ~i~iw~~~~~~~~~~~~~~~~~-------------------~~~~~-----~~~~~v~~~~~~~~~~~~~~~~l~~~~~d 147 (397)
T 1sq9_A 92 DLLFYRITREDETKKVIFEKLD-------------------LLDSD-----MKKHSFWALKWGASNDRLLSHRLVATDVK 147 (397)
T ss_dssp CEEEEEEEECTTTCCEEEEEEC-------------------CSCTT-----GGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred CEEEEEccCCcccccccceeec-------------------ccccc-----cCCCcEEEEEEeeccCCCCceEEEEEeCC
Confidence 999999876432 11111 11000 002467788888 77877 77776 6
Q ss_pred CcEEEEeccC------ccEEE-----EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceee
Q 003217 332 LSFALWDART------RELLK-----VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (838)
Q Consensus 332 ~tI~lWD~~t------g~~l~-----~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~ 400 (838)
+.|++||+.+ ++.+. .+... .. ........+.++.+.+.+ .+++
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~------------------~~~~~~~~i~~~~~~~~~-~l~~ 202 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGT------VE------------------SPMTPSQFATSVDISERG-LIAT 202 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEE------EC------------------CSSSSCCCCCEEEECTTS-EEEE
T ss_pred CcEEEEeCCccccccccceeeccCcceeeee------ec------------------cccCCCCCceEEEECCCc-eEEE
Confidence 7899999988 55433 22110 00 000112223345666666 6677
Q ss_pred ecCCcEEEEecc--C----cccc---C---CCceEEEEEcCCCc-EEEEECC---CeEEEEcC-CCCeeeEeec------
Q 003217 401 GAADAVRRVAAK--G----GFGD---D---NRRTEALTTSIDGM-IWTGGAN---GLLLQWDP-NGNRLQDFQY------ 457 (838)
Q Consensus 401 g~~~~v~~v~~~--g----~~~~---~---~~~v~ala~S~dg~-l~Sgs~D---gtIrlWD~-~g~~l~tl~~------ 457 (838)
+..++..+++.. + .+.. | ...+.+++++|++. |++++.| +.|++||+ +++++..+.+
T Consensus 203 ~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 282 (397)
T 1sq9_A 203 GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ 282 (397)
T ss_dssp ECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----
T ss_pred EeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccc
Confidence 777777666651 1 2334 6 78899999999987 7899999 99999999 7899999998
Q ss_pred -------CCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Cccccccc------cc---------------ccCEEEEEe
Q 003217 458 -------LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWV------AH---------------SSPVIKMAV 506 (838)
Q Consensus 458 -------H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~------gH---------------~~~V~sla~ 506 (838)
|...|.++++ +|++|++|+.||.|++||+. ++++..+. +| ...|.++++
T Consensus 283 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~ 362 (397)
T 1sq9_A 283 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF 362 (397)
T ss_dssp ---CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEE
T ss_pred ccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEe
Confidence 9999999876 68899999999999999997 77888888 88 999999985
Q ss_pred --CC----------CEEEEEcCCCCeeeeecCC
Q 003217 507 --GA----------GYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 507 --dg----------~~l~S~S~DgtIrlWdl~s 527 (838)
++ +++++++.|+.|++|++.+
T Consensus 363 ~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 363 LKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp ECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred ccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 55 5899999999999999865
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-26 Score=257.54 Aligned_cols=287 Identities=12% Similarity=0.163 Sum_probs=208.3
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEEC----CCCccCCCCCcceeEEecc----------ccccEEEEEEecCCC-
Q 003217 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKM----NARLLDSDDGFGEVLSWQA----------HRGPVLSLCISSYGD- 254 (838)
Q Consensus 191 ~~~V~~la~s~dg~-~LaSGs~DGtIrvWd~----~~g~~~~~~~~~~~~~l~g----------H~~~V~slafs~dG~- 254 (838)
.++|.|++|+|+|+ +|++|+.||+|++|++ .++.. .-.......+.. |.+.|++++|+|+|+
T Consensus 45 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 122 (425)
T 1r5m_A 45 LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKK--YWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122 (425)
T ss_dssp CSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC--------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred cCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccc--cccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence 67999999999999 9999999999999999 77510 000002333333 788999999999998
Q ss_pred EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCc
Q 003217 255 LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLS 333 (838)
Q Consensus 255 L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~t 333 (838)
|++|+.|++|++||.. +.....+. +| ...+.++++.+++..+++++ ++.
T Consensus 123 l~~~~~dg~i~i~~~~-~~~~~~~~-------------------~~----------~~~v~~~~~~~~~~~l~~~~~d~~ 172 (425)
T 1r5m_A 123 IVTGVENGELRLWNKT-GALLNVLN-------------------FH----------RAPIVSVKWNKDGTHIISMDVENV 172 (425)
T ss_dssp EEEEETTSCEEEEETT-SCEEEEEC-------------------CC----------CSCEEEEEECTTSSEEEEEETTCC
T ss_pred EEEEeCCCeEEEEeCC-CCeeeecc-------------------CC----------CccEEEEEECCCCCEEEEEecCCe
Confidence 7899999999999943 22211111 11 44678888888888888776 678
Q ss_pred EEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--
Q 003217 334 FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-- 411 (838)
Q Consensus 334 I~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-- 411 (838)
|++||+.+++.+..+..+.......... ...........+.+.+.+ ..+++..++..+++.
T Consensus 173 i~iwd~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~ 235 (425)
T 1r5m_A 173 TILWNVISGTVMQHFELKETGGSSINAE----------------NHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQIT 235 (425)
T ss_dssp EEEEETTTTEEEEEECCC-------------------------------CCCBSCCEEEETT-EEEEECGGGCEEEEETT
T ss_pred EEEEECCCCcEEEEeeccccCccceeec----------------cccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcC
Confidence 9999999999988876543210000000 000001112233444443 345666666555554
Q ss_pred c----CccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEE
Q 003217 412 K----GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQV 483 (838)
Q Consensus 412 ~----g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrl 483 (838)
. ..+..|...|.+++++|++. +++++.|+.|++||+ +++++..+.+|...|.++++ +| ++++++.|+.|++
T Consensus 236 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i 314 (425)
T 1r5m_A 236 EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRL 314 (425)
T ss_dssp CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEE
T ss_pred CCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEE
Confidence 1 12345778899999999986 889999999999999 68899999999999999876 56 9999999999999
Q ss_pred EeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 484 LDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 484 WD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
||+. ++++..+.+|...|.++++ +++++++++.|+.|++|++..
T Consensus 315 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 315 WSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred EECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 9987 7888999999999999985 688999999999999999864
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-26 Score=261.41 Aligned_cols=266 Identities=19% Similarity=0.272 Sum_probs=207.9
Q ss_pred CCC-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEEC
Q 003217 191 VSS-VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~-V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (838)
.+. +.|+.+ +|++|++|+.||+|++||+.++ +....+.+|.++|++++|++ ..|++|+.||+|++||+
T Consensus 118 ~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~-~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 118 DDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTG--------KCLRTLVGHTGGVWSSQMRD-NIIISGSTDRTLKVWNA 186 (445)
T ss_dssp TTSCEEEEEE--ETTEEEEEETTSCEEEEETTTC--------CEEEECCCCSSCEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred CCCcEEEEEE--cCCEEEEEECCCcEEEEECCCC--------cEEEEEcCCCCCEEEEEecC-CEEEEEeCCCeEEEEEC
Confidence 444 567666 4799999999999999999987 67888999999999999983 35899999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
.+++....+.. | ...+.++..+ +..+++++ +++|++||+.+++++..+
T Consensus 187 ~~~~~~~~~~~-------------------h----------~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~ 235 (445)
T 2ovr_B 187 ETGECIHTLYG-------------------H----------TSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL 235 (445)
T ss_dssp TTTEEEEEECC-------------------C----------SSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred CcCcEEEEECC-------------------C----------CCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 77543322221 1 3356666664 34566655 689999999999998888
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--c----CccccCCCce
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNRRT 422 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~~v 422 (838)
..|...+..+.+ ++..++++..++..+++. . ..+..|...|
T Consensus 236 ~~~~~~v~~~~~---------------------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 282 (445)
T 2ovr_B 236 MGHVAAVRCVQY---------------------------------DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 282 (445)
T ss_dssp ECCSSCEEEEEE---------------------------------CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE
T ss_pred cCCcccEEEEEE---------------------------------CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCce
Confidence 766543322221 122344555555544443 1 1344577788
Q ss_pred EEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-Ccccccccc---c
Q 003217 423 EALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA---H 497 (838)
Q Consensus 423 ~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~g---H 497 (838)
.++.+ .+..+++|+.|++|++||+ +++++.++.+|...|.++.+++++|++|+.||+|++||+. ++++..+.+ |
T Consensus 283 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 361 (445)
T 2ovr_B 283 YSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH 361 (445)
T ss_dssp EEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSC
T ss_pred EEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCC
Confidence 88888 3345899999999999999 7999999999999999999999999999999999999986 777888776 8
Q ss_pred ccCEEEEEeCCCEEEEEcCCCCeeeeecCCCCCCc
Q 003217 498 SSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLD 532 (838)
Q Consensus 498 ~~~V~sla~dg~~l~S~S~DgtIrlWdl~s~~~~d 532 (838)
...|.+++++++++++++.||+|++||+.+...+.
T Consensus 362 ~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 362 QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 396 (445)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCEEEEEECCCEEEEEeCCCeEEEEECCCCceee
Confidence 99999999999999999999999999988765443
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-28 Score=265.70 Aligned_cols=267 Identities=10% Similarity=0.036 Sum_probs=188.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|.|++|+|+|++|++|+.||+|++||+.++. .+....+.+|.++|++++|+|+|+ |++|+.|++|++||+
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG------WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE------EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc------eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 6799999999999999999999999999998751 134567889999999999999997 899999999999999
Q ss_pred CCcc---eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccE-
Q 003217 270 EAIE---KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL- 344 (838)
Q Consensus 270 ~~~~---~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~- 344 (838)
.+.. ....+ ..| ...+.++++++++..+++++ +++|++||+.+++.
T Consensus 85 ~~~~~~~~~~~~-------------------~~~----------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 135 (377)
T 3dwl_C 85 RPDGTWKQTLVL-------------------LRL----------NRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW 135 (377)
T ss_dssp ----CCCCEEEC-------------------CCC----------SSCEEEEECCTTSSCCEEEESSSCEEECCC-----C
T ss_pred CCCCceeeeeEe-------------------ccc----------CCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc
Confidence 7643 11111 111 45688888888888887776 67899999998873
Q ss_pred --EEEEec-CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec----------
Q 003217 345 --LKVFNI-DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA---------- 411 (838)
Q Consensus 345 --l~~l~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~---------- 411 (838)
++.+.. |...+..+.+++. +..++++..++..+++.
T Consensus 136 ~~~~~~~~~h~~~v~~~~~~~~-------------------------------~~~l~~~~~d~~i~iwd~~~~~~~~~~ 184 (377)
T 3dwl_C 136 WVSKHLKRPLRSTILSLDWHPN-------------------------------NVLLAAGCADRKAYVLSAYVRDVDAKP 184 (377)
T ss_dssp CCCEEECSSCCSCEEEEEECTT-------------------------------SSEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred eeeeEeecccCCCeEEEEEcCC-------------------------------CCEEEEEeCCCEEEEEEEEecccCCCc
Confidence 555654 4444444444432 22233333333222222
Q ss_pred --------------cCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCe----eeEeecCCccEEEEEE--cC
Q 003217 412 --------------KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNR----LQDFQYLPFAVQCLCT--FG 469 (838)
Q Consensus 412 --------------~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~----l~tl~~H~~~V~sls~--dG 469 (838)
...+ .|...|.+++++|+|. |++|+.|++|++||+ ++++ +.++.+|...|.++++ +|
T Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 263 (377)
T 3dwl_C 185 EASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES 263 (377)
T ss_dssp CSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT
T ss_pred cccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC
Confidence 0123 6777899999999997 899999999999999 6777 8899999999998854 78
Q ss_pred CEEEEEeeCCeEEEEeCC--C-cccc--------------------------------------------------cccc
Q 003217 470 SQIWVGYMNGIVQVLDLE--G-NLLG--------------------------------------------------GWVA 496 (838)
Q Consensus 470 ~~LasGs~DgtIrlWD~~--g-~~i~--------------------------------------------------~l~g 496 (838)
++|++|+.|+.+ +|+.. + ++.. ...+
T Consensus 264 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 342 (377)
T 3dwl_C 264 AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTV 342 (377)
T ss_dssp EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSS
T ss_pred CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCcc
Confidence 899998877766 66543 2 1111 1123
Q ss_pred cccCEEEEEe---CCC---EEEEEcCCCCeeeeec
Q 003217 497 HSSPVIKMAV---GAG---YIFTLANHGGIRGWNV 525 (838)
Q Consensus 497 H~~~V~sla~---dg~---~l~S~S~DgtIrlWdl 525 (838)
|.+.|++|.+ ++. .++|+|.||+||+||+
T Consensus 343 H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 343 HQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 9999999974 233 6999999999999985
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-26 Score=253.59 Aligned_cols=273 Identities=14% Similarity=0.118 Sum_probs=191.8
Q ss_pred eEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 135 LRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 135 ~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
+..++.+ +..|.+ +.|++|||||+.+...... ......| ..+|.|++|+|+|++|+||+.
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h-~~~v~~~~~sp~g~~l~s~s~ 81 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGH-QRTVRKVAWSPCGNYLASASF 81 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE----------------EEECSSC-SSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee----------------eeecccc-CCcEEEEEECCCCCEEEEEEC
Confidence 4445544 445655 5699999999865321100 0001123 779999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
|++|++|+..++. .+....+.+|.++|++|+|+|+|+ |+|||.|++|++||+.+...... ..
T Consensus 82 D~~v~iw~~~~~~------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~-------~~---- 144 (345)
T 3fm0_A 82 DATTCIWKKNQDD------FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC-------VS---- 144 (345)
T ss_dssp TSCEEEEEECCC-------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE-------EE----
T ss_pred CCcEEEEEccCCC------eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE-------EE----
Confidence 9999999988752 245677899999999999999998 78999999999999865321100 00
Q ss_pred eeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccE--EEEEecCCceEEeeecccCcccc
Q 003217 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL--LKVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~--l~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
.+.+| ...+..+++++++..+++++ +++|++||..+++. +.++.+|...+..+.+++...
T Consensus 145 -----~~~~h----------~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~-- 207 (345)
T 3fm0_A 145 -----VLNSH----------TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ-- 207 (345)
T ss_dssp -----EECCC----------CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS--
T ss_pred -----EecCc----------CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC--
Confidence 01112 45688889988888888877 67999999998763 456666665555555554332
Q ss_pred cccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc---------------------Cccc-cCCCceEEE
Q 003217 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK---------------------GGFG-DDNRRTEAL 425 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~---------------------g~~~-~~~~~v~al 425 (838)
.+++++.|+..++|.. ..+. .|...|.++
T Consensus 208 -----------------------------~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 258 (345)
T 3fm0_A 208 -----------------------------RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDI 258 (345)
T ss_dssp -----------------------------EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEE
T ss_pred -----------------------------EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEE
Confidence 2233333332222210 0112 266789999
Q ss_pred EEcCCCc-EEEEECCCeEEEEcCC-CC---------eeeEeecCCccEEEEEE--cC-CEEEEEeeCCeEEEEeCC
Q 003217 426 TTSIDGM-IWTGGANGLLLQWDPN-GN---------RLQDFQYLPFAVQCLCT--FG-SQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 426 a~S~dg~-l~Sgs~DgtIrlWD~~-g~---------~l~tl~~H~~~V~sls~--dG-~~LasGs~DgtIrlWD~~ 487 (838)
++++++. |++++.|++|++|+.. +. ..+.+.+|...|++|++ ++ .+|++|+.||+|++|++.
T Consensus 259 ~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 259 AWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp EECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred EEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence 9999876 8999999999999983 32 12234589999999976 45 499999999999999987
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.9e-28 Score=273.81 Aligned_cols=273 Identities=12% Similarity=0.084 Sum_probs=189.4
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec-CCC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~SgS~DgtIrvW 267 (838)
...|+||+|+| ++.+||+|+.||+|++||+.++. ......+.||.++|++|+|+| ++. |+|||.||+||+|
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS------CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 66899999999 56799999999999999998752 134456789999999999998 566 8999999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
|+++......... +. ....+.++++++++..|++++ +++|++||+++. .+.
T Consensus 193 d~~~~~~~~~~~~-------------------~~--------~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~ 244 (435)
T 4e54_B 193 DFKGNILRVFASS-------------------DT--------INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELW 244 (435)
T ss_dssp ETTSCEEEEEECC-------------------SS--------CSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCC
T ss_pred eccCCceeEEecc-------------------CC--------CCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeE
Confidence 9975322111100 00 012345567778888888887 578999998754 344
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCc-ceeeecCCcEEEEec------cCc---cc
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAA------KGG---FG 416 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~-~~~~g~~~~v~~v~~------~g~---~~ 416 (838)
++.+|...+..+ .|.+.+. .++++..++..++|. ... ..
T Consensus 245 ~~~~h~~~v~~v-------------------------------~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~ 293 (435)
T 4e54_B 245 NLRMHKKKVTHV-------------------------------ALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL 293 (435)
T ss_dssp CSBCCSSCEEEE-------------------------------EECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC
T ss_pred EEecccceEEee-------------------------------eecCCCceEEEEecCcceeeEEecccccccceEEEee
Confidence 555544433333 3333332 233455555555543 111 23
Q ss_pred cCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCcc-------EEE-EEEcCCEEEEEe----------
Q 003217 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFA-------VQC-LCTFGSQIWVGY---------- 476 (838)
Q Consensus 417 ~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~-------V~s-ls~dG~~LasGs---------- 476 (838)
.|...|.+++|+|||. |++|+.|++|++||+ +++++..+..|... +.+ ..+++..++++.
T Consensus 294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 373 (435)
T 4e54_B 294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCT 373 (435)
T ss_dssp BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSS
T ss_pred eccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEE
Confidence 5778899999999987 899999999999999 78888887766532 111 122344444443
Q ss_pred --eCCeEEEEeCC-Ccccccc-cccccCEEEEE---eCCCEEEEEcCCCCeeeeecCCCC
Q 003217 477 --MNGIVQVLDLE-GNLLGGW-VAHSSPVIKMA---VGAGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 477 --~DgtIrlWD~~-g~~i~~l-~gH~~~V~sla---~dg~~l~S~S~DgtIrlWdl~s~~ 529 (838)
.+++|++||.. |+++..+ .+|...|.++. ++|++|+||+ |++|++|+++...
T Consensus 374 ~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 374 PYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp TTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred ecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 45789999987 7776665 57888888863 4788999887 7899999987643
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-26 Score=268.68 Aligned_cols=307 Identities=16% Similarity=0.140 Sum_probs=227.7
Q ss_pred EecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCC-eEEEEEcC--CCCEEEEEeCCCcE
Q 003217 139 VCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSS-VMCMVGDE--ASGVVWSGHRDGRI 215 (838)
Q Consensus 139 ~~~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~-V~~la~s~--dg~~LaSGs~DGtI 215 (838)
..+++.|.++.++.|+|||+.+..... ........| ..+ |.|++|+| ++++|++|+.||+|
T Consensus 27 spdg~~l~~~~~~~v~v~~~~~~~~~~---------------~~~~~~~~h-~~~~v~~~~~sp~~~~~~l~s~~~dg~v 90 (615)
T 1pgu_A 27 DPTTNAIAYPCGKSAFVRCLDDGDSKV---------------PPVVQFTGH-GSSVVTTVKFSPIKGSQYLCSGDESGKV 90 (615)
T ss_dssp ETTTTEEEEEETTEEEEEECCSSCCSS---------------CSEEEECTT-TTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred CCCCCEEEEecCCeEEEEECCCCCCcc---------------ccceEEecC-CCceEEEEEECcCCCCCEEEEecCCCEE
Confidence 344667777789999999997641100 000111123 778 99999999 99999999999999
Q ss_pred EEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCC----CcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 216 MCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG----GGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 216 rvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D----gtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
++||+.++........+....+.+|..+|++++|+|+|+ |++++.| +.|++||. ......+.
T Consensus 91 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~~~~~~~----------- 157 (615)
T 1pgu_A 91 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GNSLGEVS----------- 157 (615)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CCEEEECC-----------
T ss_pred EEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CCcceeee-----------
Confidence 999996430000000145667889999999999999998 7888887 68888884 22221111
Q ss_pred eeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeC-CCcEEEEeccCccEEEEEecCCc---eEEeeecccCcc
Q 003217 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRELLKVFNIDGQ---IENRVDMSLLPD 365 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~---~~~~~~~s~~~~ 365 (838)
+| ...+.++++.+++. .+++++ +++|++||+.+++++..+..|.. .+.
T Consensus 158 --------~~----------~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~--------- 210 (615)
T 1pgu_A 158 --------GH----------SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR--------- 210 (615)
T ss_dssp --------SC----------SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE---------
T ss_pred --------cC----------CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEE---------
Confidence 12 44678888888776 677666 67999999999999888876543 222
Q ss_pred cccccceeeEEEecCCCCcceeeeeEeec-CcceeeecCCcEEEEec--cC----cc-c---cCCCceEEEEEcCCCc-E
Q 003217 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQR-SRNAIMGAADAVRRVAA--KG----GF-G---DDNRRTEALTTSIDGM-I 433 (838)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~-~~~~~~g~~~~v~~v~~--~g----~~-~---~~~~~v~ala~S~dg~-l 433 (838)
++.|.++ +..++++..++..+++. .+ .+ . .|...|.+++++ ++. +
T Consensus 211 ----------------------~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l 267 (615)
T 1pgu_A 211 ----------------------DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKF 267 (615)
T ss_dssp ----------------------EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEE
T ss_pred ----------------------EEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEE
Confidence 2344444 44555666666555554 11 23 3 677889999999 776 8
Q ss_pred EEEECCCeEEEEcC-CCCeeeEeecC----CccEEEEEE-cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe
Q 003217 434 WTGGANGLLLQWDP-NGNRLQDFQYL----PFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV 506 (838)
Q Consensus 434 ~Sgs~DgtIrlWD~-~g~~l~tl~~H----~~~V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~ 506 (838)
++++.|++|++||+ +++++..+..| ...+.++.+ ++.++++|+.|+.|++||+. ++++..+.+|.+.|.++++
T Consensus 268 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 347 (615)
T 1pgu_A 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV 347 (615)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe
Confidence 89999999999999 68899998877 356666654 88999999999999999998 6788999999999999999
Q ss_pred CCCEEEEEcCCCCeeeeecC
Q 003217 507 GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 507 dg~~l~S~S~DgtIrlWdl~ 526 (838)
+. +++++.|+.|++|++.
T Consensus 348 -~~-l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 348 -NP-LISGSYDGRIMEWSSS 365 (615)
T ss_dssp -TT-TEEEETTSCEEETTTT
T ss_pred -cC-cEEECCCCeEEEEEch
Confidence 88 9999999999999975
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-26 Score=256.77 Aligned_cols=274 Identities=18% Similarity=0.214 Sum_probs=205.7
Q ss_pred eEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 003217 135 LRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (838)
Q Consensus 135 ~~~l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DG 213 (838)
+..+..++..+++ +.|+.|++||+.+...... + ...+ ..+|.|++|+|++++|++|+.||
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~-----------------~-~~~~-~~~v~~v~~s~~~~~l~~~~~dg 156 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGSVSAL-----------------A-ETDE-STYVASVKWSHDGSFLSVGLGNG 156 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEE-----------------E-ECCT-TCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCcEeEe-----------------e-ecCC-CCCEEEEEECCCCCEEEEECCCC
Confidence 3345555565555 6799999999976543211 1 1113 67899999999999999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeec
Q 003217 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (838)
.|++||+.++ +....+.+|.+.|.+++|++ ..|++|+.|++|++||+.........
T Consensus 157 ~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--------------- 212 (401)
T 4aez_A 157 LVDIYDVESQ--------TKLRTMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGT--------------- 212 (401)
T ss_dssp CEEEEETTTC--------CEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEE---------------
T ss_pred eEEEEECcCC--------eEEEEecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccCcceeeE---------------
Confidence 9999999987 67788999999999999943 24889999999999999742221100
Q ss_pred eeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccce
Q 003217 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (838)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (838)
+.+| ...+.++++++++..+++++ +++|++||+++++++..+..
T Consensus 213 ---~~~~----------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---------------------- 257 (401)
T 4aez_A 213 ---LQGH----------SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN---------------------- 257 (401)
T ss_dssp ---EECC----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC----------------------
T ss_pred ---EcCC----------CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC----------------------
Confidence 1112 45678888888888888877 58999999998776554432
Q ss_pred eeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc--EEEEE--CCCeEEEEcC-
Q 003217 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGG--ANGLLLQWDP- 447 (838)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~--l~Sgs--~DgtIrlWD~- 447 (838)
|...|.+++++|++. +++|+ .|++|++||+
T Consensus 258 ---------------------------------------------~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~ 292 (401)
T 4aez_A 258 ---------------------------------------------HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA 292 (401)
T ss_dssp ---------------------------------------------CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred ---------------------------------------------CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence 122345677888653 45554 6999999999
Q ss_pred CCCeeeEeecCCccEEEEEE--cCCEEEE--EeeCCeEEEEeCC-Ccc--cccccccccCEEEEEe--CCCEEEEEcCCC
Q 003217 448 NGNRLQDFQYLPFAVQCLCT--FGSQIWV--GYMNGIVQVLDLE-GNL--LGGWVAHSSPVIKMAV--GAGYIFTLANHG 518 (838)
Q Consensus 448 ~g~~l~tl~~H~~~V~sls~--dG~~Las--Gs~DgtIrlWD~~-g~~--i~~l~gH~~~V~sla~--dg~~l~S~S~Dg 518 (838)
+++++.++. |...|.++++ +|++|++ |+.||.|++||+. ++. ...+.+|...|.++++ +++++++++.|+
T Consensus 293 ~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 293 TGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE 371 (401)
T ss_dssp TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred CCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 788888886 5678998875 6888988 5589999999987 433 4457899999999885 788999999999
Q ss_pred CeeeeecCCCCCCc
Q 003217 519 GIRGWNVTSPGPLD 532 (838)
Q Consensus 519 tIrlWdl~s~~~~d 532 (838)
+|++|++.....+.
T Consensus 372 ~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 372 NLKFWRVYDGDHVK 385 (401)
T ss_dssp EEEEEECCC-----
T ss_pred cEEEEECCCCcccc
Confidence 99999998755433
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-27 Score=262.92 Aligned_cols=279 Identities=18% Similarity=0.227 Sum_probs=199.0
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+.+++.+ ++.|.+ +.|++|+|||+.+...... + ..| ..+|.+++|+|+|++|++|+
T Consensus 68 ~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~-----------------~--~~h-~~~v~~~~~s~~g~~las~~ 127 (380)
T 3iz6_a 68 KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHA-----------------I--KLH-CPWVMECAFAPNGQSVACGG 127 (380)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEE-----------------E--ECC-CTTCCCCEECTTSSEEEECC
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceE-----------------E--ecC-CCCEEEEEECCCCCEEEEee
Confidence 46666654 445665 5699999999876433211 1 233 77899999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC--CEEEeeCCCcEEEEECCCcceeeecCCCceeeeEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG--~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~ 288 (838)
.|++|++|++.+... ..........+.||.+.|.++.|+|++ .|+|||.|++|++||+.++.....+....
T Consensus 128 ~d~~v~iw~~~~~~~-~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~------ 200 (380)
T 3iz6_a 128 LDSACSIFNLSSQAD-RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF------ 200 (380)
T ss_dssp SSSCCEEEECCCCSS-CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS------
T ss_pred CCCcEEEEECCCCcc-ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc------
Confidence 999999999976420 011122345678999999999999975 38999999999999998765432221100
Q ss_pred EEeeceeecccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcEEEEecc-CccEEEEEecCCceEEeeecccCcc
Q 003217 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDAR-TRELLKVFNIDGQIENRVDMSLLPD 365 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI~lWD~~-tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (838)
..+| ...+.++...+ ++..+++++ |++|++||++ +++++.++.+|...+..
T Consensus 201 --------~~~h----------~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~-------- 254 (380)
T 3iz6_a 201 --------PSGH----------TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINS-------- 254 (380)
T ss_dssp --------SSSC----------CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCE--------
T ss_pred --------CCCC----------ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEE--------
Confidence 0011 44677777755 566777776 6899999998 45666677665443222
Q ss_pred cccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc--Cc----cc-------cCCCceEEEEEcCCCc
Q 003217 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--GG----FG-------DDNRRTEALTTSIDGM 432 (838)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g~----~~-------~~~~~v~ala~S~dg~ 432 (838)
+.|.+++...++++.|+..++|.. +. +. .+...|.+++|+|+|.
T Consensus 255 -----------------------v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 311 (380)
T 3iz6_a 255 -----------------------VKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR 311 (380)
T ss_dssp -----------------------EEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS
T ss_pred -----------------------EEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCC
Confidence 344444555566666666666541 11 11 1223478999999998
Q ss_pred -EEEEECCCeEEEEcC-CCCeeeEe----ecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCC
Q 003217 433 -IWTGGANGLLLQWDP-NGNRLQDF----QYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG 488 (838)
Q Consensus 433 -l~Sgs~DgtIrlWD~-~g~~l~tl----~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g 488 (838)
|++|+.||+|++||. .++++..+ .+|.+.|+++++ +|++|++|+.|++|+|||+.+
T Consensus 312 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 312 LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 789999999999999 78888777 689999999865 789999999999999999874
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-27 Score=265.36 Aligned_cols=280 Identities=13% Similarity=0.158 Sum_probs=197.0
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC---CccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEE
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNA---RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~---g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIr 265 (838)
.++|.|++|+| ++++|+||+.||+|++||+.+ +. ..+....+ +|.++|++|+|+|++. |++|+.|++|+
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-----~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~ 136 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-----VYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQII 136 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-----CCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-----ccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence 78999999999 999999999999999999876 31 11223333 6999999999999998 78999999999
Q ss_pred EEECC---CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEE--EcCCCCEEEEeC-CCcEEEEec
Q 003217 266 IWPWE---AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL--SDHSRAKVWSAG-FLSFALWDA 339 (838)
Q Consensus 266 vWd~~---~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~la--s~~~~~~V~s~s-~~tI~lWD~ 339 (838)
+||++ ++........+ ....+ .+.. .+ ....+.++. ..+++..+++++ +++|++||+
T Consensus 137 vwd~~~~~~~~~~~~~~~~--~i~~~-------~~~~----~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 199 (437)
T 3gre_A 137 VLKVNHYQQESEVKFLNCE--CIRKI-------NLKN----FG----KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDI 199 (437)
T ss_dssp EEEEEEEEETTEEEEEEEE--EEEEE-------EGGG----GS----SCCCEEEEEEEECSSCEEEEEEETTSEEEEEET
T ss_pred EEEeccccCCceeeccccc--eeEEE-------EccC----cc----cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 99985 22211111100 11100 0000 00 122344444 345666777776 589999999
Q ss_pred cCccEEEEEec--CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC--
Q 003217 340 RTRELLKVFNI--DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG-- 413 (838)
Q Consensus 340 ~tg~~l~~l~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g-- 413 (838)
++++++.++.. |...+. ++.|.+.+..+++|..++..++|. .+
T Consensus 200 ~~~~~~~~~~~~~h~~~v~-------------------------------~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 248 (437)
T 3gre_A 200 RTLERLQIIENSPRHGAVS-------------------------------SICIDEECCVLILGTTRGIIDIWDIRFNVL 248 (437)
T ss_dssp TTCCEEEEEECCGGGCCEE-------------------------------EEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred CCCeeeEEEccCCCCCceE-------------------------------EEEECCCCCEEEEEcCCCeEEEEEcCCccE
Confidence 99999888875 222222 234444455566677777666654 11
Q ss_pred --ccc-cCCCceEEEE----EcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecC--------------------------
Q 003217 414 --GFG-DDNRRTEALT----TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL-------------------------- 458 (838)
Q Consensus 414 --~~~-~~~~~v~ala----~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H-------------------------- 458 (838)
.+. .+...|.+++ +++++. +++|+.|++|++||+ ++++++++.+|
T Consensus 249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (437)
T 3gre_A 249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328 (437)
T ss_dssp EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence 222 4566788885 445675 789999999999999 68888888754
Q ss_pred CccEEEEEE-cCCEEEEEeeCCeEEEEeCC-Ccccccccc-------------------------------------ccc
Q 003217 459 PFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA-------------------------------------HSS 499 (838)
Q Consensus 459 ~~~V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~g-------------------------------------H~~ 499 (838)
...|+++++ ++++|++|+.|++|++||+. ++++..+.+ |.+
T Consensus 329 ~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 408 (437)
T 3gre_A 329 LNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHD 408 (437)
T ss_dssp GGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CC
T ss_pred CCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccccc
Confidence 445777765 56699999999999999987 666666655 899
Q ss_pred CEEEEEe--C--CCEEEEEcCCCCeeeee
Q 003217 500 PVIKMAV--G--AGYIFTLANHGGIRGWN 524 (838)
Q Consensus 500 ~V~sla~--d--g~~l~S~S~DgtIrlWd 524 (838)
.|++|++ + +.+++||+.||+|++|+
T Consensus 409 ~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 409 IINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 9999874 4 55899999999999995
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-25 Score=240.90 Aligned_cols=267 Identities=15% Similarity=0.189 Sum_probs=195.0
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+.+++.. +..|.+ +.|+.|++||+.+...... + ..| ..+|.+++|+|++++|++|+
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~-----------------~--~~h-~~~v~~~~~~~~~~~l~s~~ 84 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-----------------I--SGH-KLGISDVAWSSDSNLLVSAS 84 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-----------------E--CCC-SSCEEEEEECTTSSEEEEEE
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh-----------------h--ccC-CCceEEEEEcCCCCEEEEEC
Confidence 46666665 345555 5699999999865432211 1 123 77899999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
.||+|++||+.++ +....+++|...|.+++|+|++. |++|+.|++|++||+.+++....+..
T Consensus 85 ~d~~i~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------- 147 (312)
T 4ery_A 85 DDKTLKIWDVSSG--------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA--------- 147 (312)
T ss_dssp TTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC---------
T ss_pred CCCEEEEEECCCC--------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC---------
Confidence 9999999999987 67788999999999999999998 78999999999999976543222211
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (838)
| ...+..+++++++..+++++ ++.|++||+++++++..+..+..
T Consensus 148 ----------~----------~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~--------------- 192 (312)
T 4ery_A 148 ----------H----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN--------------- 192 (312)
T ss_dssp ----------C----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSC---------------
T ss_pred ----------C----------CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCC---------------
Confidence 1 34577788888888888776 67899999999988776532111
Q ss_pred ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC----ccccCCCc---eEEEEEcCCCc-EEEEEC
Q 003217 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRR---TEALTTSIDGM-IWTGGA 438 (838)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~---v~ala~S~dg~-l~Sgs~ 438 (838)
.....+.+.+++..++.+..++..+++. .+ .+..+... +......+++. +++|+.
T Consensus 193 ---------------~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~ 257 (312)
T 4ery_A 193 ---------------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 257 (312)
T ss_dssp ---------------CCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCT
T ss_pred ---------------CceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECC
Confidence 0111234444455556666666666654 11 12223222 22233335555 889999
Q ss_pred CCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEe--eCCeEEEEeCC
Q 003217 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGY--MNGIVQVLDLE 487 (838)
Q Consensus 439 DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs--~DgtIrlWD~~ 487 (838)
||+|++||+ ++++++++.+|...|.++++ ++.+|++++ .|++|++|+.+
T Consensus 258 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 258 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999999999 78999999999999999876 678999987 59999999864
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=256.64 Aligned_cols=267 Identities=10% Similarity=0.054 Sum_probs=197.3
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEE--eccccccEEEEEEec-CCC-EEEeeCCCcEE
Q 003217 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS--WQAHRGPVLSLCISS-YGD-LWSGSEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~--l~gH~~~V~slafs~-dG~-L~SgS~DgtIr 265 (838)
..+|.|++|+|++ ++|++|+.||+|++||+.++ +.... +.+|.+.|++++|+| ++. |++|+.|++|+
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ--------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST--------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc--------ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 7799999999999 99999999999999999986 33333 358999999999999 555 78999999999
Q ss_pred EEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccE
Q 003217 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (838)
Q Consensus 266 vWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~ 344 (838)
+||+.+.. ...+... .. ....+.++++++++..+++++ +++|++||+ +++.
T Consensus 145 iwd~~~~~-~~~~~~~----------------~~----------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~ 196 (383)
T 3ei3_B 145 LRDFSGSV-IQVFAKT----------------DS----------WDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHE 196 (383)
T ss_dssp EEETTSCE-EEEEECC----------------CC----------SSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCE
T ss_pred EEECCCCc-eEEEecc----------------CC----------CCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCE
Confidence 99997421 1111000 00 124578888888888888877 578999999 5777
Q ss_pred EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCc-ceeeecCCcEEEEecc------Ccc--
Q 003217 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAAK------GGF-- 415 (838)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~-~~~~g~~~~v~~v~~~------g~~-- 415 (838)
+..+..|...+..+. +.+.+. .++++..++..+++.. +.+
T Consensus 197 ~~~~~~h~~~v~~~~-------------------------------~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 245 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAE-------------------------------FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIA 245 (383)
T ss_dssp EEEEECSSSCEEEEE-------------------------------ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEE
T ss_pred EEEeccCCCcEEEEE-------------------------------ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEE
Confidence 777776654433333 333333 3455555655555541 111
Q ss_pred -ccCCCceEEEEEcC-CCc-EEEEECCCeEEEEcC-CCCeeeEeecCCc-----------------cEEEE--EEcCCEE
Q 003217 416 -GDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF-----------------AVQCL--CTFGSQI 472 (838)
Q Consensus 416 -~~~~~~v~ala~S~-dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~-----------------~V~sl--s~dG~~L 472 (838)
..|...|.+++++| ++. |++++.|++|++||+ ++++++++.+|.. .+.++ +++|++
T Consensus 246 ~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~- 324 (383)
T 3ei3_B 246 EMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL- 324 (383)
T ss_dssp EEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-
T ss_pred EecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-
Confidence 24677899999999 887 789999999999999 6888888876642 22233 345655
Q ss_pred EEEeeCCeEEEEeCC-Ccccccccc--cccCEEEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 473 WVGYMNGIVQVLDLE-GNLLGGWVA--HSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 473 asGs~DgtIrlWD~~-g~~i~~l~g--H~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
+|+.|++|++||+. ++++..+.+ |...|..++ +++++|++++ |++|++|++.+
T Consensus 325 -s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 325 -LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp -CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred -ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 77899999999987 788888887 456676656 4788999997 99999999864
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-27 Score=250.80 Aligned_cols=262 Identities=15% Similarity=0.164 Sum_probs=177.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec--CCC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--dG~-L~SgS~DgtIrvW 267 (838)
..+|.|++|+|++++|++|+.||+|++||+.++. ...+....+.+|.++|++|+|+| |++ |++|+.|++|++|
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT----SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS----CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC----CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 7899999999999999999999999999998752 22235567889999999999999 576 7899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC--CCEEEEeC-CCcEEEEeccCccE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~V~s~s-~~tI~lWD~~tg~~ 344 (838)
|+.+......... ..... .+..| ...+.++++.++ +..+++++ +++|++||+++++.
T Consensus 87 d~~~~~~~~~~~~-~~~~~---------~~~~~----------~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 146 (351)
T 3f3f_A 87 EEDPDQEECSGRR-WNKLC---------TLNDS----------KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD 146 (351)
T ss_dssp EECTTSCTTSSCS-EEEEE---------EECCC----------SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC
T ss_pred ecCCCcccccccC-cceee---------eeccc----------CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH
Confidence 9976432110000 00000 01111 456888888887 77777776 67899999998876
Q ss_pred EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEE
Q 003217 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (838)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (838)
+..+...... . .. .+ ....+...+.+
T Consensus 147 ~~~~~~~~~~----~-------------------~~---------~~----------------------~~~~~~~~~~~ 172 (351)
T 3f3f_A 147 LRSWTLTSEM----K-------------------VL---------SI----------------------PPANHLQSDFC 172 (351)
T ss_dssp TTCCEEEEEE----E-------------------SC---------SC----------------------CCSSCSCCCEE
T ss_pred hccccccccc----c-------------------cc---------cc----------------------ccCCcccceeE
Confidence 4333211000 0 00 00 00122334455
Q ss_pred EEEcCC---Cc-EEEEECCCeEEEEcC-CCC--eeeEeecCCccEEEEEE--cC----CEEEEEeeCCeEEEEeCC----
Q 003217 425 LTTSID---GM-IWTGGANGLLLQWDP-NGN--RLQDFQYLPFAVQCLCT--FG----SQIWVGYMNGIVQVLDLE---- 487 (838)
Q Consensus 425 la~S~d---g~-l~Sgs~DgtIrlWD~-~g~--~l~tl~~H~~~V~sls~--dG----~~LasGs~DgtIrlWD~~---- 487 (838)
++++|+ +. +++++.|+.+.+|+. .++ ++..+.+|...|+++++ +| ++|++|+.||+|++||+.
T Consensus 173 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 252 (351)
T 3f3f_A 173 LSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLS 252 (351)
T ss_dssp EEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-
T ss_pred EEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcC
Confidence 556554 33 566666666655555 333 25556666666666654 34 466666666666666654
Q ss_pred -------------------------------------------CcccccccccccCEEEEEe--CCCEEEEEcCCCCeee
Q 003217 488 -------------------------------------------GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRG 522 (838)
Q Consensus 488 -------------------------------------------g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrl 522 (838)
.+++..+.+|.+.|+++++ ++++|+|++.|++|++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~i 332 (351)
T 3f3f_A 253 PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRL 332 (351)
T ss_dssp --------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEE
T ss_pred ccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEE
Confidence 2567888999999999985 6889999999999999
Q ss_pred eecCCCCC
Q 003217 523 WNVTSPGP 530 (838)
Q Consensus 523 Wdl~s~~~ 530 (838)
|++.+...
T Consensus 333 w~~~~~~~ 340 (351)
T 3f3f_A 333 WKATYSNE 340 (351)
T ss_dssp EEECTTSC
T ss_pred EecCcCcc
Confidence 99876543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=256.90 Aligned_cols=275 Identities=14% Similarity=0.114 Sum_probs=194.5
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-------------ccccccEEEEEEec-CCC-
Q 003217 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-------------QAHRGPVLSLCISS-YGD- 254 (838)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l-------------~gH~~~V~slafs~-dG~- 254 (838)
.++|.|++|+| ++++|++|+.||+|++||+.++. ....+ .+|.++|++++|+| ++.
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSS--------RQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCS--------SSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCc--------ccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 78999999999 99999999999999999999863 11111 36999999999999 554
Q ss_pred EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC---CCCEEEEeC-
Q 003217 255 LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH---SRAKVWSAG- 330 (838)
Q Consensus 255 L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~---~~~~V~s~s- 330 (838)
|++|+.|++|++||+.+.+....+.. ...+..+...+ ++..+++++
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 164 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADVFNF------------------------------EETVYSHHMSPVSTKHCLVAVGTR 164 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEEC------------------------------SSCEEEEEECSSCSSCCEEEEEES
T ss_pred EEEEeCCCeEEEeeCCCCccceeccC------------------------------CCceeeeEeecCCCCCcEEEEEcC
Confidence 89999999999999977543222110 12233444433 333566655
Q ss_pred CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEe
Q 003217 331 FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA 410 (838)
Q Consensus 331 ~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~ 410 (838)
++.|++||+.+++++..+..|...+..+.+++.... .++++..++..+++
T Consensus 165 ~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------------------------ll~~~~~dg~i~i~ 214 (408)
T 4a11_B 165 GPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY------------------------------ILATASADSRVKLW 214 (408)
T ss_dssp SSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTT------------------------------EEEEEETTSCEEEE
T ss_pred CCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCc------------------------------EEEEEcCCCcEEEE
Confidence 578999999999988888766554444444432221 12334444433333
Q ss_pred cc----------------------CccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCc-----c
Q 003217 411 AK----------------------GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF-----A 461 (838)
Q Consensus 411 ~~----------------------g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~-----~ 461 (838)
.. ..+..|...|.+++++|++. +++++.|+.|++||+ +++.+..+..+.. .
T Consensus 215 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 294 (408)
T 4a11_B 215 DVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKG 294 (408)
T ss_dssp ETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSC
T ss_pred ECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccccc
Confidence 20 11235677899999999997 899999999999999 6766555443221 1
Q ss_pred E-EEEEE-cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCCCch
Q 003217 462 V-QCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDS 533 (838)
Q Consensus 462 V-~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~~d~ 533 (838)
+ ..+.. .+..+++++.|+.|++||+. ++++..+.+|.+.|.++++ ++++|++++.||.|++|++.+..++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 295 LKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp CCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred ceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 1 12222 35577777899999999987 7889999999999999885 788999999999999999988766543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-26 Score=245.55 Aligned_cols=269 Identities=13% Similarity=0.139 Sum_probs=189.0
Q ss_pred eeEEEEec--C-CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCce-eeecCCCCeEEEEEcCCCCEEEE
Q 003217 134 FLRTIVCT--E-EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFK-ESVKGVSSVMCMVGDEASGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~--~-~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~~~V~~la~s~dg~~LaS 208 (838)
.+.+++.. + +.|.+ +.|++|++||+....... ..+.. ...| ..+|.+++|+|+|++|+|
T Consensus 19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~---------------~~~~~~~~~h-~~~v~~~~~s~dg~~l~s 82 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF---------------GVPVRSFKGH-SHIVQDCTLTADGAYALS 82 (319)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE---------------EEEEEEEECC-SSCEEEEEECTTSSEEEE
T ss_pred eEEEEEccCCCccEEEEecCCccEEEecCCCCCccc---------------cccceEEeCC-cccEEEEEECCCCCEEEE
Confidence 45566654 2 35555 569999999985321100 00111 1123 789999999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeE
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~ 287 (838)
|+.|++||+||+.++ +....+.+|.+.|.+++|+|++. |+|||.|++||+||+... +...+..
T Consensus 83 ~s~D~~v~~wd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~~~------- 146 (319)
T 3frx_A 83 ASWDKTLRLWDVATG--------ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLG------- 146 (319)
T ss_dssp EETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEECC-------
T ss_pred EeCCCEEEEEECCCC--------CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEec-------
Confidence 999999999999997 67788999999999999999998 789999999999998542 1111111
Q ss_pred EEEeeceeecccceeccceeeeecCCeEEEEEcC------CCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeec
Q 003217 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH------SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM 360 (838)
Q Consensus 288 ~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~------~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (838)
| ...+..+.+.+ ++..+++++ +++|++||++++++...+.+|...+..
T Consensus 147 ------------h----------~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~--- 201 (319)
T 3frx_A 147 ------------H----------NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT--- 201 (319)
T ss_dssp ------------C----------SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEE---
T ss_pred ------------c----------CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEE---
Confidence 1 22344444433 234566665 689999999999888777666543333
Q ss_pred ccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc--Ccc---ccCCCceEEEEEcCCCcEEE
Q 003217 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--GGF---GDDNRRTEALTTSIDGMIWT 435 (838)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g~~---~~~~~~v~ala~S~dg~l~S 435 (838)
+.+.+++..++++..++..++|.. +.. ......|.+++|+|++.+++
T Consensus 202 ----------------------------~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la 253 (319)
T 3frx_A 202 ----------------------------LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA 253 (319)
T ss_dssp ----------------------------EEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEE
T ss_pred ----------------------------EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEE
Confidence 344444555566777776666651 111 12345788999999999655
Q ss_pred EECCCeEEEEcCC-CCeeeEee--------cCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 436 GGANGLLLQWDPN-GNRLQDFQ--------YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 436 gs~DgtIrlWD~~-g~~l~tl~--------~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
++.++.+++|+++ +..+..+. .|...|.++++ ||++|++|+.||+|+|||+.
T Consensus 254 ~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 254 AATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 5556669999994 55555553 34567888765 79999999999999999975
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-26 Score=259.26 Aligned_cols=253 Identities=17% Similarity=0.238 Sum_probs=189.4
Q ss_pred CCC-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEEC
Q 003217 191 VSS-VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~-V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (838)
..+ +.|+.++ +++|+||+.||+|++||+.++ +....+.+|.++|++++|++++.|+||+.||+|++||+
T Consensus 121 ~~~v~~~~~~~--~~~l~sgs~dg~i~vwd~~~~--------~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 121 MTSVITCLQFE--DNYVITGADDKMIRVYDSINK--------KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI 190 (464)
T ss_dssp SSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEET
T ss_pred CCCcEEEEEEC--CCEEEEEcCCCcEEEEECCCC--------cEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEEC
Confidence 444 5787775 579999999999999999987 67888999999999999999998899999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEc--CCCCEEEEeC-CCcEEEEeccCccEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD--HSRAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~--~~~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
.+++....+.. | ...+.++++. +++..+++++ +++|++||+.++....
T Consensus 191 ~~~~~~~~~~~-------------------h----------~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 191 KKGCCTHVFEG-------------------H----------NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp TTTEEEEEECC-------------------C----------SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred CCCcEEEEECC-------------------C----------CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 87543322221 1 3456666655 3556666666 6899999998876533
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
........ .. ... .+....... ..+.+|...+.++
T Consensus 242 ~~~~~~~~------------------~~-~~~-------------~~~~~~~~~------------~~~~~~~~~v~~~- 276 (464)
T 3v7d_B 242 DHGEEHDY------------------PL-VFH-------------TPEENPYFV------------GVLRGHMASVRTV- 276 (464)
T ss_dssp -----CCS------------------SE-EES-------------CGGGCTTEE------------EEECCCSSCEEEE-
T ss_pred cccccCCc------------------ce-Eee-------------ccCCCeEEE------------EEccCccceEEEE-
Confidence 22111000 00 000 000000000 0123444555555
Q ss_pred EcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCE
Q 003217 427 TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV 501 (838)
Q Consensus 427 ~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V 501 (838)
++++. +++|+.|++|++||+ +++++.++.+|...|.++++ +|++|++|+.||+|++||+. ++++.++.+|...|
T Consensus 277 -~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v 355 (464)
T 3v7d_B 277 -SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 355 (464)
T ss_dssp -EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred -cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcE
Confidence 34454 899999999999999 78999999999999999865 68899999999999999986 88999999999999
Q ss_pred EEEEeCCCEEEEEcCCCCeeeeecCCC
Q 003217 502 IKMAVGAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 502 ~sla~dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
.++.++++++++++.|++|++||+..+
T Consensus 356 ~~~~~~~~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 356 GLLRLSDKFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp EEEEECSSEEEEEETTSEEEEEETTTC
T ss_pred EEEEEcCCEEEEEeCCCcEEEEECCCC
Confidence 999999999999999999999998764
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-26 Score=249.05 Aligned_cols=237 Identities=12% Similarity=0.055 Sum_probs=182.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC--CC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvW 267 (838)
.++|.|++|+|++++|++|+.||+|++|++..+. .+....+.+|.++|++|+|+++ ++ |++|+.||+|++|
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc------ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence 7899999999999999999999999999997431 1556778999999999999977 76 7899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC--CCEEEEeC-CCcEEEEeccCccE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~V~s~s-~~tI~lWD~~tg~~ 344 (838)
|+.++...... .+..| ...+.++++.++ +..+++++ +++|++||+.++..
T Consensus 85 d~~~~~~~~~~-----------------~~~~~----------~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 137 (379)
T 3jrp_A 85 KEENGRWSQIA-----------------VHAVH----------SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 137 (379)
T ss_dssp EEETTEEEEEE-----------------EECCC----------SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred EcCCCceeEee-----------------eecCC----------CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence 99764311100 00111 446788888887 77777776 67899999987632
Q ss_pred EE--EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCce
Q 003217 345 LK--VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (838)
Q Consensus 345 l~--~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (838)
.. .+. .|...|
T Consensus 138 ~~~~~~~-------------------------------------------------------------------~~~~~v 150 (379)
T 3jrp_A 138 TSPIIID-------------------------------------------------------------------AHAIGV 150 (379)
T ss_dssp CCEEEEE-------------------------------------------------------------------CCTTCE
T ss_pred eeeEEec-------------------------------------------------------------------CCCCce
Confidence 11 111 122233
Q ss_pred EEEEEcC-------------CCc-EEEEECCCeEEEEcC-CCC----eeeEeecCCccEEEEEE--c---CCEEEEEeeC
Q 003217 423 EALTTSI-------------DGM-IWTGGANGLLLQWDP-NGN----RLQDFQYLPFAVQCLCT--F---GSQIWVGYMN 478 (838)
Q Consensus 423 ~ala~S~-------------dg~-l~Sgs~DgtIrlWD~-~g~----~l~tl~~H~~~V~sls~--d---G~~LasGs~D 478 (838)
.+++++| ++. +++|+.|++|++||+ .++ ++..+.+|...|.++++ + +++|++|+.|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d 230 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence 3444444 455 899999999999999 453 55778899999999875 5 7899999999
Q ss_pred CeEEEEeCCC-c-----ccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 479 GIVQVLDLEG-N-----LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 479 gtIrlWD~~g-~-----~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
|+|++||+.. + .+.....|...|+++++ +++++++++.|+.|++|++..
T Consensus 231 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 231 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 9999999873 2 24444569999999985 788999999999999999864
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-25 Score=245.70 Aligned_cols=267 Identities=15% Similarity=0.169 Sum_probs=192.7
Q ss_pred CCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEE
Q 003217 191 VSSVMCMVGDEA---SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (838)
Q Consensus 191 ~~~V~~la~s~d---g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrv 266 (838)
.++|.|++|+|+ |++|++|+.||+|++||+.+.. ......+.+|.++|++++|+|+|+ |++|+.|++|++
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG------QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS------CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC------ceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence 789999999999 6999999999999999998721 023367889999999999999998 789999999999
Q ss_pred EECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEE--cCCCCEEEEeC-CCcEEEEeccCcc
Q 003217 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS--DHSRAKVWSAG-FLSFALWDARTRE 343 (838)
Q Consensus 267 Wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las--~~~~~~V~s~s-~~tI~lWD~~tg~ 343 (838)
||+.+..... .. .| ...+.+++. .+++..+++++ +++|++||+++++
T Consensus 113 wd~~~~~~~~-~~-------------------~~----------~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 113 WDLSSNQAIQ-IA-------------------QH----------DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EETTTTEEEE-EE-------------------EC----------SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred EEcCCCCcee-ec-------------------cc----------cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence 9997643211 00 11 345777777 66777777766 6889999999999
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec-cC-------cc
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-KG-------GF 415 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~g-------~~ 415 (838)
++..+..+.... ....... ..+++..++...++. .. ..
T Consensus 163 ~~~~~~~~~~~~-~~~~~~~---------------------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~ 208 (368)
T 3mmy_A 163 PMMVLQLPERCY-CADVIYP---------------------------------MAVVATAERGLIVYQLENQPSEFRRIE 208 (368)
T ss_dssp CSEEEECSSCEE-EEEEETT---------------------------------EEEEEEGGGCEEEEECSSSCEEEEECC
T ss_pred EEEEEecCCCce-EEEecCC---------------------------------eeEEEeCCCcEEEEEeccccchhhhcc
Confidence 888877654321 1111110 011111111111111 00 00
Q ss_pred ccCCCceEEEEEcCCC-----cEEEEECCCeEEEEcC-CC---CeeeEeecCCc------------cEEEEEE--cCCEE
Q 003217 416 GDDNRRTEALTTSIDG-----MIWTGGANGLLLQWDP-NG---NRLQDFQYLPF------------AVQCLCT--FGSQI 472 (838)
Q Consensus 416 ~~~~~~v~ala~S~dg-----~l~Sgs~DgtIrlWD~-~g---~~l~tl~~H~~------------~V~sls~--dG~~L 472 (838)
......+..+.+.+++ .+++|+.|+.|++||+ .+ +++..+.+|.. +|+++++ +|++|
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 288 (368)
T 3mmy_A 209 SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTL 288 (368)
T ss_dssp CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCE
T ss_pred ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEE
Confidence 0111223333333222 1899999999999999 44 56778888876 7998876 68899
Q ss_pred EEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 473 WVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 473 asGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
++|+.||.|++||+. ++++..+.+|...|.++++ ++++|+++|.|+..+.|++..
T Consensus 289 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 289 ATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 999999999999997 7889999999999999985 788999999999887777544
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-25 Score=253.28 Aligned_cols=229 Identities=18% Similarity=0.261 Sum_probs=186.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..+|.|+.+ ++++|++|+.||+|++||+.++ +....+.+|.++|++++| +++ |++|+.||+|++||+
T Consensus 133 ~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~--------~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 133 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL--------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CCCEEEEEC--CSSEEEEEESSSCEEEEESSSC--------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred CCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC--------eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEEC
Confidence 567999987 6899999999999999999987 677889999999999999 566 799999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
.+++....+.. | ...+.++.++ +..+++++ +++|++||+.+++.+...
T Consensus 201 ~~~~~~~~~~~-------------------h----------~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~ 249 (435)
T 1p22_A 201 NTGEMLNTLIH-------------------H----------CEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLR 249 (435)
T ss_dssp SSCCEEEEECC-------------------C----------CSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEE
T ss_pred CCCcEEEEEcC-------------------C----------CCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceee
Confidence 87653322211 1 3346666664 34666665 689999999876542110
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
. .+..|...|.++.+
T Consensus 250 ~----------------------------------------------------------------~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 250 R----------------------------------------------------------------VLVGHRAAVNVVDF- 264 (435)
T ss_dssp E----------------------------------------------------------------EECCCSSCEEEEEE-
T ss_pred e----------------------------------------------------------------EecCCCCcEEEEEe-
Confidence 0 01123334555666
Q ss_pred CCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe
Q 003217 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV 506 (838)
Q Consensus 429 ~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~ 506 (838)
.+..+++|+.||+|++||+ +++++.++.+|...|.++.+++++|++|+.||+|++||+. ++++.++.+|...|.++++
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 344 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 344 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe
Confidence 3345899999999999999 7899999999999999999999999999999999999987 7889999999999999999
Q ss_pred CCCEEEEEcCCCCeeeeecCC
Q 003217 507 GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 507 dg~~l~S~S~DgtIrlWdl~s 527 (838)
+++++++++.||+|++||+..
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHH
T ss_pred cCCEEEEEeCCCcEEEEECCC
Confidence 999999999999999999754
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-26 Score=273.07 Aligned_cols=242 Identities=19% Similarity=0.219 Sum_probs=188.0
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
..+|.||+++|++ .+|+||+.||+||+|++.... .........+.+|...|++++|+|+|+ |+|||.|++|||||
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~---~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd 458 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDD---KAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD 458 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCST---TCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCC---cccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 8899999999875 799999999999999997642 011123467899999999999999998 78999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
+.++.....+ .+| ...|.++++++++..+++++ |++|++||....... .
T Consensus 459 ~~~~~~~~~~-------------------~~h----------~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~-~ 508 (694)
T 3dm0_A 459 LAAGVSTRRF-------------------VGH----------TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY-T 508 (694)
T ss_dssp TTTTEEEEEE-------------------ECC----------SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-E
T ss_pred CCCCcceeEE-------------------eCC----------CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce-e
Confidence 9765432221 112 45688899988888888877 689999997543221 1
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
+. . ....|...|.++++
T Consensus 509 ~~-----------------------------~----------------------------------~~~~h~~~v~~~~~ 525 (694)
T 3dm0_A 509 IS-----------------------------E----------------------------------GGEGHRDWVSCVRF 525 (694)
T ss_dssp EC-----------------------------S----------------------------------STTSCSSCEEEEEE
T ss_pred ec-----------------------------c----------------------------------CCCCCCCcEEEEEE
Confidence 10 0 01234456778889
Q ss_pred cCCC---cEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccC
Q 003217 428 SIDG---MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP 500 (838)
Q Consensus 428 S~dg---~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~ 500 (838)
+|++ .+++|+.|++|++||+ +++++.++.+|...|+++++ +|++|++|+.||+|+|||+. ++++..+..| ..
T Consensus 526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~ 604 (694)
T 3dm0_A 526 SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SV 604 (694)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-SC
T ss_pred eCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-Cc
Confidence 9886 4899999999999999 68899999999999999876 68899999999999999987 7777777654 57
Q ss_pred EEEEEe--CCCEEEEEcCCCCeeeeecCCCCC
Q 003217 501 VIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 501 V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
|.++++ ++.++ +++.|++|++||+.+...
T Consensus 605 v~~~~~sp~~~~l-~~~~~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 605 IHALCFSPNRYWL-CAATEHGIKIWDLESKSI 635 (694)
T ss_dssp EEEEEECSSSSEE-EEEETTEEEEEETTTTEE
T ss_pred EEEEEEcCCCcEE-EEEcCCCEEEEECCCCCC
Confidence 888886 44444 455677899999877544
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-25 Score=254.23 Aligned_cols=268 Identities=14% Similarity=0.142 Sum_probs=192.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc---CCCCCcceeEEecccc------------ccEEEEEEecCC--
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL---DSDDGFGEVLSWQAHR------------GPVLSLCISSYG-- 253 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~---~~~~~~~~~~~l~gH~------------~~V~slafs~dG-- 253 (838)
.++|.|++|+|+|++|++|+.||+|++|++.++.. .....++....+++|. ++|++|+|+|++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 67999999999999999999999999999987520 0001222467789998 899999999997
Q ss_pred C-EEEeeCCCcEEEEECCCcceeee---cCCCce----------------eeeEEEEeec--eeecccceeccceeeeec
Q 003217 254 D-LWSGSEGGGIKIWPWEAIEKALS---LKPEER----------------HTAALIVERS--YIDLRSHLSVNGFSSILT 311 (838)
Q Consensus 254 ~-L~SgS~DgtIrvWd~~~~~~~~~---~~~~~~----------------~~~~~~~~~s--~~~l~~~~~~~~~~~~~s 311 (838)
. |++|+.|++|++|++.+...... +..+.. .......... ...+.+ +.
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------h~ 177 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA----------HT 177 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC----------CS
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC----------CC
Confidence 4 88999999999999865332111 000000 0000000000 000011 25
Q ss_pred CCeEEEEEcCCCCEEEEeCCCcEEEEeccC-ccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeee
Q 003217 312 SDIKNLLSDHSRAKVWSAGFLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFG 390 (838)
Q Consensus 312 ~~v~~las~~~~~~V~s~s~~tI~lWD~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~ 390 (838)
..+.++++++++..++++.+++|++||+.+ ++++..+....
T Consensus 178 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~-------------------------------------- 219 (447)
T 3dw8_B 178 YHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKP-------------------------------------- 219 (447)
T ss_dssp SCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCC--------------------------------------
T ss_pred cceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeeccc--------------------------------------
Confidence 678899999999999998788999999984 33333221100
Q ss_pred EeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC-c-EEEEECCCeEEEEcC-CCCe----eeEeecCCc---
Q 003217 391 FFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-M-IWTGGANGLLLQWDP-NGNR----LQDFQYLPF--- 460 (838)
Q Consensus 391 ~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg-~-l~Sgs~DgtIrlWD~-~g~~----l~tl~~H~~--- 460 (838)
..+..|...|.+++++|++ . +++|+.||+|++||+ ++++ ++.+.+|..
T Consensus 220 ----------------------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 277 (447)
T 3dw8_B 220 ----------------------ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSN 277 (447)
T ss_dssp ----------------------SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----
T ss_pred ----------------------ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccc
Confidence 0133456678899999997 4 899999999999999 6665 788888886
Q ss_pred ---------cEEEEEE--cCCEEEEEeeCCeEEEEeCC--CcccccccccccCE-----------------EEEEeCCCE
Q 003217 461 ---------AVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPV-----------------IKMAVGAGY 510 (838)
Q Consensus 461 ---------~V~sls~--dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V-----------------~sla~dg~~ 510 (838)
.|.++++ +|++|++|+. ++|+|||+. ++++..+.+|...+ .++.+++++
T Consensus 278 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~ 356 (447)
T 3dw8_B 278 RSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV 356 (447)
T ss_dssp CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE
T ss_pred cccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCE
Confidence 8999876 6889999988 999999986 67899999997532 233468899
Q ss_pred EEEEcCCCCeeeeecCCCC
Q 003217 511 IFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 511 l~S~S~DgtIrlWdl~s~~ 529 (838)
|++++.|++|++||+.+..
T Consensus 357 l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 357 VMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp EEEECSTTEEEEEETTTCC
T ss_pred EEEeccCCEEEEEEcCCCc
Confidence 9999999999999987653
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=256.87 Aligned_cols=280 Identities=13% Similarity=0.092 Sum_probs=206.2
Q ss_pred CCeEEEEEcCCCC-EEEEE----------eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee
Q 003217 192 SSVMCMVGDEASG-VVWSG----------HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS 259 (838)
Q Consensus 192 ~~V~~la~s~dg~-~LaSG----------s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS 259 (838)
..|.|++|+|+|+ +|++| +.||+|++||+.++.. ........|...|++++|+|+|+ |++|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 86 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS------EKPIASLQVDSKFNDLDWSHNNKIIAGAL 86 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG------CSCSCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC------CcEEEEEecCCceEEEEECCCCCeEEEEc
Confidence 3688999999997 99999 8999999999988620 01222346899999999999997 88999
Q ss_pred CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC-CCEEEEeC-CCcEEEE
Q 003217 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALW 337 (838)
Q Consensus 260 ~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~V~s~s-~~tI~lW 337 (838)
.|++|++|++.+..... .... .+.+| ...+.+++++++ +..+++++ +++|++|
T Consensus 87 ~dg~v~vw~~~~~~~~~------~~~~---------~~~~h----------~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 87 DNGSLELYSTNEANNAI------NSMA---------RFSNH----------SSSVKTVKFNAKQDNVLASGGNNGEIFIW 141 (416)
T ss_dssp SSSCEEEECCSSTTSCC------CEEE---------ECCCS----------SSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred cCCeEEEeecccccccc------cchh---------hccCC----------ccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence 99999999997621000 0000 01112 446778888876 67788777 6799999
Q ss_pred eccCcc------EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeec-CcceeeecCCcEEEEe
Q 003217 338 DARTRE------LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR-SRNAIMGAADAVRRVA 410 (838)
Q Consensus 338 D~~tg~------~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~-~~~~~~g~~~~v~~v~ 410 (838)
|+.+++ ....+.. .......+..+.+.+. +..++++..++..+++
T Consensus 142 d~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw 193 (416)
T 2pm9_A 142 DMNKCTESPSNYTPLTPGQ----------------------------SMSSVDEVISLAWNQSLAHVFASAGSSNFASIW 193 (416)
T ss_dssp BTTTTSSCTTTCCCBCCCC----------------------------SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEE
T ss_pred ECCCCcccccccccccccc----------------------------ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEE
Confidence 999876 2111100 0001112234455555 3455666677766665
Q ss_pred c--cC----ccccC------CCceEEEEEcCCC--cEEEEECCC---eEEEEcC-CC-CeeeEee-cCCccEEEEEE---
Q 003217 411 A--KG----GFGDD------NRRTEALTTSIDG--MIWTGGANG---LLLQWDP-NG-NRLQDFQ-YLPFAVQCLCT--- 467 (838)
Q Consensus 411 ~--~g----~~~~~------~~~v~ala~S~dg--~l~Sgs~Dg---tIrlWD~-~g-~~l~tl~-~H~~~V~sls~--- 467 (838)
. .+ .+..+ ...+.+++++|++ .+++++.|+ +|++||+ ++ ++++.+. +|...|+++++
T Consensus 194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~ 273 (416)
T 2pm9_A 194 DLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQ 273 (416)
T ss_dssp ETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSS
T ss_pred ECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCC
Confidence 4 11 12222 6789999999997 488999998 9999999 54 6788888 99999999976
Q ss_pred cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CC-CEEEEEcCCCCeeeeecCCCCC
Q 003217 468 FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GA-GYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 468 dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg-~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
++++|++|+.|++|++||+. ++++..+.+|...|.++++ ++ .++++++.|++|++|++.....
T Consensus 274 ~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 274 DEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp CSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred CCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 67899999999999999987 7889999999999999985 55 7899999999999999977554
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-25 Score=237.00 Aligned_cols=238 Identities=19% Similarity=0.286 Sum_probs=188.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe--ccccccEEEEEEecCCC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (838)
..+|.|++|+|++++|++|+ ||+|++|++.++. .......+ .+|..+|++++|+|+|+ |++|+.|++|++|
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG-----NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT-----CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred CCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC-----ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 78999999999999999999 9999999998752 11222333 38999999999999998 7899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~ 346 (838)
|+.+.+..... .+..+ ...+.+++..+++..+++++ ++.|++||+++++.+.
T Consensus 125 d~~~~~~~~~~-----------------~~~~~----------~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~ 177 (337)
T 1gxr_A 125 DLAAPTPRIKA-----------------ELTSS----------APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR 177 (337)
T ss_dssp ECCCC--EEEE-----------------EEECS----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ECCCCCcceee-----------------ecccC----------CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Confidence 99764321100 00111 34577888888888888776 5789999999887655
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
.+.. |...+.+++
T Consensus 178 ~~~~-------------------------------------------------------------------~~~~i~~~~ 190 (337)
T 1gxr_A 178 QFQG-------------------------------------------------------------------HTDGASCID 190 (337)
T ss_dssp EECC-------------------------------------------------------------------CSSCEEEEE
T ss_pred eeec-------------------------------------------------------------------ccCceEEEE
Confidence 4432 223355678
Q ss_pred EcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCCcccccccccccCEE
Q 003217 427 TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVI 502 (838)
Q Consensus 427 ~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~ 502 (838)
++|++. +++++.|++|++||+ +++++..+ .|...|.++++ +|++|++|+.|+.|++||+.......+.+|...|.
T Consensus 191 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~ 269 (337)
T 1gxr_A 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL 269 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEE
T ss_pred ECCCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCcccee
Confidence 888886 889999999999999 67777766 47788998865 68899999999999999998655567889999999
Q ss_pred EEEe--CCCEEEEEcCCCCeeeeecCCCC
Q 003217 503 KMAV--GAGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 503 sla~--dg~~l~S~S~DgtIrlWdl~s~~ 529 (838)
++++ +++++++++.|+.|++|++.+..
T Consensus 270 ~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence 9985 68899999999999999987643
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=250.20 Aligned_cols=288 Identities=12% Similarity=0.135 Sum_probs=202.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
.+.+++|+|+|++|++|+.||+|++||+.++ +....+.+| ..+...+|+++|+ |++|+.|++|++||+.+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 128 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIR--------DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF 128 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSE--------ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEeccc--------ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence 4567899999999999999999999999886 334445566 4556667899998 78999999999999976
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEec
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI 350 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~ 350 (838)
......+. +| ...+.++++++++..+++++ +++|++||+.+++++..+.+
T Consensus 129 ~~~~~~~~-------------------~h----------~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 179 (420)
T 3vl1_A 129 NLQREIDQ-------------------AH----------VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG 179 (420)
T ss_dssp CEEEEETT-------------------SS----------SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC
T ss_pred cceeeecc-------------------cc----------cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC
Confidence 43322111 12 45688899988888888887 57899999999999888887
Q ss_pred CCceEEeeecccCccccc----ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec-----cCccccCCCc
Q 003217 351 DGQIENRVDMSLLPDFAM----EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-----KGGFGDDNRR 421 (838)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~----~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-----~g~~~~~~~~ 421 (838)
|...+..+.+++.....+ +..++ +|... ..+....+.. ..++...+..+.. ......+...
T Consensus 180 h~~~v~~~~~~~~~~~l~s~~~d~~v~--iwd~~-~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 180 HRATVTDIAIIDRGRNVLSASLDGTIR--LWECG-TGTTIHTFNR-------KENPHDGVNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEE--EEETT-TTEEEEEECB-------TTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCcEE--EeECC-CCceeEEeec-------CCCCCCCccEEEEecCCcceeeecccCc
Confidence 776656666655432211 11122 22211 0111000000 0011122222211 0011123455
Q ss_pred eEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEee-cCCccEEEEEE--cCC-EEEEEeeCCeEEEEeCC-Cc-cccc
Q 003217 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ-YLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLE-GN-LLGG 493 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~-~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~-g~-~i~~ 493 (838)
+.+++++|+|. +++|+.||+|++||+ +++.+..+. .|...|+++++ +|+ +|++|+.||+|++||+. ++ ++..
T Consensus 250 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 329 (420)
T 3vl1_A 250 KNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGE 329 (420)
T ss_dssp CCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE
T ss_pred ccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhh
Confidence 66677889997 789999999999999 677766664 58899999976 566 99999999999999997 43 4778
Q ss_pred ccc-cccCEEEEE-eCCCEEEEEcCCCCeeeeecCCC
Q 003217 494 WVA-HSSPVIKMA-VGAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 494 l~g-H~~~V~sla-~dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
+.+ |...|.++. .+++++++++.|++|++|++..+
T Consensus 330 ~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 330 FLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred hhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence 877 677888887 47889999999999999998764
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=242.93 Aligned_cols=267 Identities=10% Similarity=0.035 Sum_probs=202.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd 268 (838)
.++|.|++|+|++++|++|+.||+|++|++.++. .......+.+|..+|++++|+|+++ |++|+.||+|++||
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA-----KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT-----TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC-----ccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 7799999999999999999999999999998751 0113455679999999999999998 68999999999999
Q ss_pred C-CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccC-----
Q 003217 269 W-EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART----- 341 (838)
Q Consensus 269 ~-~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~t----- 341 (838)
+ .+... ..+ .+. .+...+.++++.+ +..+++++ +++|++||+++
T Consensus 86 ~~~~~~~-~~~-------------------~~~--------~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~ 136 (342)
T 1yfq_A 86 LIGSPSF-QAL-------------------TNN--------EANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGV 136 (342)
T ss_dssp SSSSSSE-EEC-------------------BSC--------CCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBC
T ss_pred eccCCce-Eec-------------------ccc--------CCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccc
Confidence 9 76432 111 110 0144677888887 77777776 67899999987
Q ss_pred ----ccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCc---
Q 003217 342 ----RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG--- 414 (838)
Q Consensus 342 ----g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~--- 414 (838)
++++.++. +... ...+.+.+.. ++++..++..+++....
T Consensus 137 ~~~~~~~~~~~~-~~~~-------------------------------v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~ 182 (342)
T 1yfq_A 137 IAVKNLNSNNTK-VKNK-------------------------------IFTMDTNSSR--LIVGMNNSQVQWFRLPLCED 182 (342)
T ss_dssp EEEEESCSSSSS-SCCC-------------------------------EEEEEECSSE--EEEEESTTEEEEEESSCCTT
T ss_pred ccccCCeeeEEe-eCCc-------------------------------eEEEEecCCc--EEEEeCCCeEEEEECCcccc
Confidence 54433332 1111 1122333222 45555555555544111
Q ss_pred ------cccCCCceEEEEEcC-CCc-EEEEECCCeEEEEcC-CC------CeeeEeecCCc---------cEEEEEE--c
Q 003217 415 ------FGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NG------NRLQDFQYLPF---------AVQCLCT--F 468 (838)
Q Consensus 415 ------~~~~~~~v~ala~S~-dg~-l~Sgs~DgtIrlWD~-~g------~~l~tl~~H~~---------~V~sls~--d 468 (838)
...+...+.+++++| ++. +++|+.||.|++||. .+ +.+.++.+|.. .|.++++ +
T Consensus 183 ~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 262 (342)
T 1yfq_A 183 DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR 262 (342)
T ss_dssp CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT
T ss_pred ccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCC
Confidence 123556789999999 876 889999999999999 44 78888888865 9999876 6
Q ss_pred CCEEEEEeeCCeEEEEeCC-Cccccccccc-ccCEEEEEeCCCEEEEEcCCCC-eeeeec
Q 003217 469 GSQIWVGYMNGIVQVLDLE-GNLLGGWVAH-SSPVIKMAVGAGYIFTLANHGG-IRGWNV 525 (838)
Q Consensus 469 G~~LasGs~DgtIrlWD~~-g~~i~~l~gH-~~~V~sla~dg~~l~S~S~Dgt-IrlWdl 525 (838)
|++|++|+.||.|++||+. ++++..+.+| ...|.+++++++++++++.|++ .+.|..
T Consensus 263 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 263 HKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp TCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred CCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCcccccccc
Confidence 8899999999999999997 7889999999 9999999999999999999999 777664
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-26 Score=251.64 Aligned_cols=278 Identities=12% Similarity=0.082 Sum_probs=182.1
Q ss_pred cCceeEEEEecCC-EEEE-ec--------CCCEEEEeCCCCccccccccccccCCCCCCCCCCcee-eec-CCCCeEEEE
Q 003217 131 IGCFLRTIVCTEE-QLWA-GG--------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE-SVK-GVSSVMCMV 198 (838)
Q Consensus 131 ~~~~~~~l~~~~~-~l~~-g~--------d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~-g~~~V~~la 198 (838)
.|-++++++...+ ++++ |. ++.|++|++........ .......+ .+. +...|.|++
T Consensus 13 ~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~------------~~~~~~~~~~l~~~~~~v~s~~ 80 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK------------EQFHILSEFALEDNDDSPTAID 80 (365)
T ss_dssp CSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHH------------HHEEEEEEEECCTTSCCCCEEE
T ss_pred CCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCccee------------eeeeeeeEEEccCCCCceEEEE
Confidence 4556888876533 4544 32 33599999864322110 00000000 011 155788887
Q ss_pred EcCCCCEEEEE-----------eCCCcEEEEECCCCccCCCCCcceeEE-----eccccccEEEEEEecCCC-EE--Eee
Q 003217 199 GDEASGVVWSG-----------HRDGRIMCWKMNARLLDSDDGFGEVLS-----WQAHRGPVLSLCISSYGD-LW--SGS 259 (838)
Q Consensus 199 ~s~dg~~LaSG-----------s~DGtIrvWd~~~g~~~~~~~~~~~~~-----l~gH~~~V~slafs~dG~-L~--SgS 259 (838)
++. ..+++| +.|+++|+|++.+.. ...+.... ...|...|.+++|||||+ |+ ||+
T Consensus 81 ~~~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~ 154 (365)
T 4h5i_A 81 ASK--GIILVGCNENSTKITQGKGNKHLRKFKYDKVN----DQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSK 154 (365)
T ss_dssp EET--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTT----TEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESC
T ss_pred eCC--CEEEEEECCCccEEEEecCCCcEEEEEecCCC----ceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECC
Confidence 764 455554 567899999987652 11111111 123556799999999998 44 677
Q ss_pred CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEec
Q 003217 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA 339 (838)
Q Consensus 260 ~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~ 339 (838)
.|++|||||+.+++....+. + ...|..+++++++..+++++++++++|+.
T Consensus 155 ~d~~i~iwd~~~~~~~~~~~--------------------~----------~~~V~~v~fspdg~~l~s~s~~~~~~~~~ 204 (365)
T 4h5i_A 155 VPAIMRIIDPSDLTEKFEIE--------------------T----------RGEVKDLHFSTDGKVVAYITGSSLEVIST 204 (365)
T ss_dssp SSCEEEEEETTTTEEEEEEE--------------------C----------SSCCCEEEECTTSSEEEEECSSCEEEEET
T ss_pred CCCEEEEeECCCCcEEEEeC--------------------C----------CCceEEEEEccCCceEEeccceeEEEEEe
Confidence 89999999998755433221 1 34578899999999999999989999999
Q ss_pred cCccEEEEE--ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCc----EEEEec--
Q 003217 340 RTRELLKVF--NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA----VRRVAA-- 411 (838)
Q Consensus 340 ~tg~~l~~l--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~----v~~v~~-- 411 (838)
.+++.+... ..+......+.+ .+++...+.+..++ ..+.+.
T Consensus 205 ~~~~~~~~~~~~~~~~~v~~v~f-------------------------------spdg~~l~~~s~d~~~~~~i~~~~~~ 253 (365)
T 4h5i_A 205 VTGSCIARKTDFDKNWSLSKINF-------------------------------IADDTVLIAASLKKGKGIVLTKISIK 253 (365)
T ss_dssp TTCCEEEEECCCCTTEEEEEEEE-------------------------------EETTEEEEEEEESSSCCEEEEEEEEE
T ss_pred ccCcceeeeecCCCCCCEEEEEE-------------------------------cCCCCEEEEEecCCcceeEEeecccc
Confidence 888875433 223333333333 33333333322221 111111
Q ss_pred --------cCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEe-ecCCccEEEEEE--cCCEEEEEeeC
Q 003217 412 --------KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF-QYLPFAVQCLCT--FGSQIWVGYMN 478 (838)
Q Consensus 412 --------~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl-~~H~~~V~sls~--dG~~LasGs~D 478 (838)
...+..|...|.+++|+|||+ |++|+.|++|+|||+ ++++++++ .+|..+|++|++ ||++|++||.|
T Consensus 254 ~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D 333 (365)
T 4h5i_A 254 SGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAA 333 (365)
T ss_dssp TTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETT
T ss_pred cceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCC
Confidence 113456778899999999998 789999999999999 78999885 789999999875 79999999999
Q ss_pred CeEEEEeCC
Q 003217 479 GIVQVLDLE 487 (838)
Q Consensus 479 gtIrlWD~~ 487 (838)
++|||||+.
T Consensus 334 ~tvrvw~ip 342 (365)
T 4h5i_A 334 NTIHIIKLP 342 (365)
T ss_dssp SEEEEEECC
T ss_pred CeEEEEEcC
Confidence 999999985
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-24 Score=262.98 Aligned_cols=272 Identities=15% Similarity=0.148 Sum_probs=213.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.+.|.|++|+|+|++|++|+.||+|++||+.++ +....+.+|.++|++++|+|+|+ |++|+.||+|+|||+
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ--------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCC--------ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 789999999999999999999999999999987 67788999999999999999998 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCc-cEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR-ELLKV 347 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg-~~l~~ 347 (838)
.+++....+. +| ...+.++++++++..+++++ +++|++||+.++ .+...
T Consensus 85 ~~~~~~~~~~-------------------~~----------~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 135 (814)
T 3mkq_A 85 NTGEKVVDFE-------------------AH----------PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (814)
T ss_dssp TTCCEEEEEE-------------------CC----------SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred CCCcEEEEEe-------------------cC----------CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence 7754332221 11 45688889988888888877 579999999987 66666
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEee-cCcceeeecCCcEEEEecc--C----ccc-cCC
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAADAVRRVAAK--G----GFG-DDN 419 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~-~~~~~~~g~~~~v~~v~~~--g----~~~-~~~ 419 (838)
+..|...+..+ .|.+ .+...+++..++..+++.. + .+. .+.
T Consensus 136 ~~~~~~~v~~~-------------------------------~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 184 (814)
T 3mkq_A 136 FEGHEHFVMCV-------------------------------AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184 (814)
T ss_dssp EECCSSCEEEE-------------------------------EEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCT
T ss_pred EcCCCCcEEEE-------------------------------EEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCC
Confidence 66554433222 3333 2334455666665555541 1 111 233
Q ss_pred CceEEEEEcC--CCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccc
Q 003217 420 RRTEALTTSI--DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLG 492 (838)
Q Consensus 420 ~~v~ala~S~--dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~ 492 (838)
..+..++++| ++. +++|+.||+|++||. +++++.++.+|...|.++++ +|++|++|+.||+|++||+. ++++.
T Consensus 185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~ 264 (814)
T 3mkq_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264 (814)
T ss_dssp TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 6788899988 775 889999999999999 78999999999999999865 68899999999999999987 78899
Q ss_pred cccccccCEEEEEe--CCCE-EEEEcCCCCeeeeecCCCCC
Q 003217 493 GWVAHSSPVIKMAV--GAGY-IFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 493 ~l~gH~~~V~sla~--dg~~-l~S~S~DgtIrlWdl~s~~~ 530 (838)
.+..|...|+++++ +++. ++..+.|+.+.+|++....+
T Consensus 265 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 265 TLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP 305 (814)
T ss_dssp EECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC
T ss_pred EeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc
Confidence 99999999999986 4442 35566678899999765433
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-26 Score=265.19 Aligned_cols=236 Identities=12% Similarity=-0.044 Sum_probs=164.4
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC------CC-EEEeeCCCcEEEEECCCc
Q 003217 200 DEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY------GD-LWSGSEGGGIKIWPWEAI 272 (838)
Q Consensus 200 s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d------G~-L~SgS~DgtIrvWd~~~~ 272 (838)
+|++++++||+.|++|++|++.++. ........+.+|.+.|++|+|+|+ +. |+|||.||+|||||+.+.
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~----~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~ 245 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTST----LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDN 245 (524)
T ss_dssp ------------CEEEEEEEEETTT----CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCC
T ss_pred chhhhhhccCCCCceEEEEEccCCC----CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCC
Confidence 4566778889999999999998752 011112456788999999999997 34 789999999999999754
Q ss_pred ceee--ecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccE-EEEE
Q 003217 273 EKAL--SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL-LKVF 348 (838)
Q Consensus 273 ~~~~--~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~-l~~l 348 (838)
.... ..... .....+.+| ...+.++++.++ ..|++|+ |++|++||+++++. ..++
T Consensus 246 ~~~~~~~~~~~----------~p~~~l~~h----------~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~ 304 (524)
T 2j04_B 246 ATDVHVFKMCE----------KPSLTLSLA----------DSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYD 304 (524)
T ss_dssp SSSSSEEECCC----------SCSEEECCT----------TTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEE
T ss_pred ccccccceeec----------CceEEEEcC----------CCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEe
Confidence 3110 00000 000111222 456888888765 4677766 68999999986531 1111
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEE--E
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL--T 426 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al--a 426 (838)
..|...|.+| +
T Consensus 305 -------------------------------------------------------------------~~H~~~V~sv~~~ 317 (524)
T 2j04_B 305 -------------------------------------------------------------------QVHDSYILSVSTA 317 (524)
T ss_dssp -------------------------------------------------------------------ECSSSCEEEEEEE
T ss_pred -------------------------------------------------------------------ecccccEEEEEEE
Confidence 1233445666 5
Q ss_pred EcCCC-c-EEEEECCCeEEEEcC-CCCeeeEeecCCc--cEEEEE--EcCCEEEEEeeCCeEEEEeCC-Ccccccccccc
Q 003217 427 TSIDG-M-IWTGGANGLLLQWDP-NGNRLQDFQYLPF--AVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (838)
Q Consensus 427 ~S~dg-~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~--~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~ 498 (838)
++++| . |+|||.|++|||||+ +++++.++.+|.. .|.+++ ++++.+++|+.|++|+|||+. +.++.++.+|.
T Consensus 318 ~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~ 397 (524)
T 2j04_B 318 YSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE 397 (524)
T ss_dssp CCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECS
T ss_pred cCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCC
Confidence 78886 4 799999999999999 6788888888764 466664 468899999999999999987 67788899999
Q ss_pred cCEEEEEe--CCCEEEEEcCCCCeeeeecCC
Q 003217 499 SPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 499 ~~V~sla~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
+.|++|++ +++.++|||.|++||+||+..
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred CceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 99999985 778999999999999999643
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=227.93 Aligned_cols=272 Identities=18% Similarity=0.195 Sum_probs=194.2
Q ss_pred ceeEEEEec---CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCce-eeecCCCCeEEEEEcCCCCEEE
Q 003217 133 CFLRTIVCT---EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFK-ESVKGVSSVMCMVGDEASGVVW 207 (838)
Q Consensus 133 ~~~~~l~~~---~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~~~V~~la~s~dg~~La 207 (838)
..+.+|+.. ++.|.+ |.|++|||||+.+...... .+.+ ...| ..+|.|++|+|+|++|+
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~---------------~~~~~l~~h-~~~V~~~~~s~dg~~l~ 102 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG---------------IPQRALRGH-SHFVSDVVISSDGQFAL 102 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE---------------EEEEEECCC-SSCEEEEEECTTSSEEE
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc---------------eeeEEEeCC-CCCEEEEEECCCCCEEE
Confidence 356677765 234554 5699999999975432110 1111 1123 78999999999999999
Q ss_pred EEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeee
Q 003217 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (838)
Q Consensus 208 SGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~ 286 (838)
+|+.||.|++|+.... ........|...+..+.+++++. |++|+.|+.+++||+.........
T Consensus 103 s~~~d~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~-------- 166 (340)
T 4aow_A 103 SGSWDGTLRLWDLTTG--------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ-------- 166 (340)
T ss_dssp EEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC--------
T ss_pred EEcccccceEEeeccc--------ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE--------
Confidence 9999999999999886 55666778889999999999987 899999999999998653221111
Q ss_pred EEEEeeceeecccceeccceeeeecCCeEEEEEcCCC--CEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccC
Q 003217 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR--AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (838)
Q Consensus 287 ~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~--~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~ 363 (838)
+.++ ...+..+++...+ ..+++++ +++|++||+.+++++..+.+|...+..+
T Consensus 167 ----------~~~~----------~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~----- 221 (340)
T 4aow_A 167 ----------DESH----------SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV----- 221 (340)
T ss_dssp ----------SSSC----------SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE-----
T ss_pred ----------eccc----------cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEE-----
Confidence 0011 2345555554432 3455554 6899999999999988887665433333
Q ss_pred cccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCc-----cccCCCceEEEEEcCCCcEEEEEC
Q 003217 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG-----FGDDNRRTEALTTSIDGMIWTGGA 438 (838)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~-----~~~~~~~v~ala~S~dg~l~Sgs~ 438 (838)
.|.+++..++++..++..+++.... ...+...+.++.++|++.+++++.
T Consensus 222 --------------------------~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 275 (340)
T 4aow_A 222 --------------------------TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAAT 275 (340)
T ss_dssp --------------------------EECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEE
T ss_pred --------------------------EECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccC
Confidence 3444444556666666666654111 112445788999999999999999
Q ss_pred CCeEEEEcCC-CCeeeEee---------cCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 439 NGLLLQWDPN-GNRLQDFQ---------YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 439 DgtIrlWD~~-g~~l~tl~---------~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
|++|++||+. +.++.++. +|...|+++++ +|++|++|+.||+|+|||++
T Consensus 276 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 276 GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 9999999994 55555543 68899999875 78999999999999999986
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-25 Score=240.87 Aligned_cols=239 Identities=14% Similarity=0.161 Sum_probs=187.4
Q ss_pred CCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc-----ccccEEEEEEecC----CC-EE
Q 003217 191 VSSVMCMVGDEA----SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA-----HRGPVLSLCISSY----GD-LW 256 (838)
Q Consensus 191 ~~~V~~la~s~d----g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~g-----H~~~V~slafs~d----G~-L~ 256 (838)
.++|.|++|+|+ ...+++++.|+.|++||+.++ +....+++ |...|++++|+|+ |. |+
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ--------GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG--------GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC--------cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence 789999999984 566777777889999999876 34444543 5688999999999 54 78
Q ss_pred EeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcE
Q 003217 257 SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSF 334 (838)
Q Consensus 257 SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI 334 (838)
+|+.||+|++||+.+++....+. +| ...+.++++.+ ++..+++++ +++|
T Consensus 90 ~~~~dg~i~v~d~~~~~~~~~~~-------------------~~----------~~~i~~~~~~~~~~~~l~s~~~dg~i 140 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQCIKHYV-------------------GH----------GNAINELKFHPRDPNLLLSVSKDHAL 140 (366)
T ss_dssp EEETTCEEEEECTTTCCEEEEEE-------------------SC----------CSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred EecCCCEEEEEEchhceEeeeec-------------------CC----------CCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 99999999999997654322211 11 45688888888 778888877 6799
Q ss_pred EEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCc
Q 003217 335 ALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG 414 (838)
Q Consensus 335 ~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~ 414 (838)
++||+.+++.+..+..
T Consensus 141 ~iwd~~~~~~~~~~~~---------------------------------------------------------------- 156 (366)
T 3k26_A 141 RLWNIQTDTLVAIFGG---------------------------------------------------------------- 156 (366)
T ss_dssp EEEETTTTEEEEEECS----------------------------------------------------------------
T ss_pred EEEEeecCeEEEEecc----------------------------------------------------------------
Confidence 9999998876554411
Q ss_pred cccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeec----------------------------CCccEEE
Q 003217 415 FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY----------------------------LPFAVQC 464 (838)
Q Consensus 415 ~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~----------------------------H~~~V~s 464 (838)
+..|...|.+++++|++. +++|+.|++|++||+ +++++..+.. |...|.+
T Consensus 157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (366)
T 3k26_A 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC 236 (366)
T ss_dssp TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence 112344567888999886 889999999999999 5665554443 9999999
Q ss_pred EEEcCCEEEEEeeCCeEEEEeCC-Cc--------------ccccccccccCEEEEE--eC--CCEEEEEcCCCCeeeeec
Q 003217 465 LCTFGSQIWVGYMNGIVQVLDLE-GN--------------LLGGWVAHSSPVIKMA--VG--AGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 465 ls~dG~~LasGs~DgtIrlWD~~-g~--------------~i~~l~gH~~~V~sla--~d--g~~l~S~S~DgtIrlWdl 525 (838)
+++++++|++|+.|+.|++||+. ++ ++..+.+|...|++++ ++ ++++++++.|+.|++||+
T Consensus 237 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~ 316 (366)
T 3k26_A 237 VRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL 316 (366)
T ss_dssp EEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEEC
T ss_pred EEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEEC
Confidence 99999999999999999999975 32 3677888999998876 56 899999999999999998
Q ss_pred CCCCC
Q 003217 526 TSPGP 530 (838)
Q Consensus 526 ~s~~~ 530 (838)
....+
T Consensus 317 ~~~~~ 321 (366)
T 3k26_A 317 EVEDP 321 (366)
T ss_dssp CSSSG
T ss_pred CCCCC
Confidence 76543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-25 Score=249.83 Aligned_cols=257 Identities=9% Similarity=-0.043 Sum_probs=156.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec--------CCC-EEEeeCCCcE
Q 003217 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--------YGD-LWSGSEGGGI 264 (838)
Q Consensus 194 V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--------dG~-L~SgS~DgtI 264 (838)
+....+.+++.+|+||+.|++||+||..++.+ ........+.||++.|++|+|+| ||+ |+|||.|++|
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~---~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv 168 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETI---ITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL 168 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEE---EEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCcc---ceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence 33444555677899999999999999988620 00011234689999999999998 777 7899999999
Q ss_pred EEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeC-CCcEEEEeccCc
Q 003217 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTR 342 (838)
Q Consensus 265 rvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~~tI~lWD~~tg 342 (838)
||||+.+..+..... .+ ...+.++++.+.+. ++++++ +++|++||++++
T Consensus 169 ~~Wd~~~~~~~~~~~-------------------~~----------~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~ 219 (393)
T 4gq1_A 169 IIWRLTDEGPILAGY-------------------PL----------SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLN 219 (393)
T ss_dssp EEEEEETTEEEEEEE-------------------EC----------SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCC
T ss_pred EEEECCCCceeeeec-------------------CC----------CCCcEEEEECCCCCceEEecCCCCEEEEEECCCC
Confidence 999986543322211 11 45677888887664 577766 689999999998
Q ss_pred cEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCce
Q 003217 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (838)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (838)
+....+..+... ..... .+ ..... ... ......+...+
T Consensus 220 ~~~~~~~~~~~~------~~~~~-----------~s------------~~~~~--------~~~-----~~~~~~~~~~v 257 (393)
T 4gq1_A 220 LSAEENSQTELV------KNPWL-----------LT------------LNTLP--------LVN-----TCHSSGIASSL 257 (393)
T ss_dssp C----------C------SCCCS-----------EE------------EESGG--------GC-----------CCSSSC
T ss_pred cccccccccCCc------ccceE-----------Ee------------ccccc--------cee-----eeecccccccc
Confidence 875544321110 00000 00 00000 000 00112344556
Q ss_pred EEEEEc-CCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEE-------------------E---cCCEEEEEee
Q 003217 423 EALTTS-IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC-------------------T---FGSQIWVGYM 477 (838)
Q Consensus 423 ~ala~S-~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls-------------------~---dG~~LasGs~ 477 (838)
.++.++ +||. |++++.|+++++||+ .++....+..|...+..+. . ++.++++|+.
T Consensus 258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~ 337 (393)
T 4gq1_A 258 ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ 337 (393)
T ss_dssp SEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT
T ss_pred eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC
Confidence 677764 7776 899999999999999 6777777776665554331 1 2347788889
Q ss_pred CCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 478 NGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 478 DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
||+|+|||+. ++++..+.+|...|.+|++ ||++|++++.|| +.+|.+
T Consensus 338 Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 338 HGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 9999999987 7788888999999999985 889999998765 656654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-24 Score=229.03 Aligned_cols=238 Identities=11% Similarity=0.155 Sum_probs=167.2
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC--CCEEEE
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d--g~~LaS 208 (838)
.+++++.+ ++.|.+ +.|++|||||+...... + ...+ ..| .++|.+++|+++ +++|+|
T Consensus 11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~-~--------------~~~l--~gH-~~~V~~v~~s~~~~g~~l~s 72 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK-L--------------IDTL--TGH-EGPVWRVDWAHPKFGTILAS 72 (297)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC-C--------------CEEE--CCC-SSCEEEEEECCGGGCSEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE-E--------------EEEE--ccc-cCCeEEEEecCCCcCCEEEE
Confidence 46666655 456666 56999999998642110 0 0111 133 789999999864 899999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC--CC-EEEeeCCCcEEEEECCCccee--eecCCCce
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKA--LSLKPEER 283 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~~~~~~--~~~~~~~~ 283 (838)
|+.||+|++||+.++. ......+.+|..+|++++|+|+ |. |++|+.|++|++||+.+.... ..+
T Consensus 73 ~s~D~~v~iWd~~~~~------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~----- 141 (297)
T 2pm7_B 73 CSYDGKVMIWKEENGR------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIII----- 141 (297)
T ss_dssp EETTTEEEEEEBSSSC------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEE-----
T ss_pred EcCCCEEEEEEcCCCc------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeee-----
Confidence 9999999999998752 1345678899999999999997 66 789999999999999653211 111
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC-------------CCEEEEeC-CCcEEEEeccCccEEEEEe
Q 003217 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-------------RAKVWSAG-FLSFALWDARTRELLKVFN 349 (838)
Q Consensus 284 ~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-------------~~~V~s~s-~~tI~lWD~~tg~~l~~l~ 349 (838)
.+| ...+.++++++. +..+++++ |++|++||+++++....+.
T Consensus 142 --------------~~h----------~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~ 197 (297)
T 2pm7_B 142 --------------DAH----------AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 197 (297)
T ss_dssp --------------ECC----------SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred --------------ecc----------cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE
Confidence 111 223444444443 45677776 6899999987654110000
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~ 429 (838)
..+.+|...|.+++|+|
T Consensus 198 ---------------------------------------------------------------~~l~~H~~~V~~v~~sp 214 (297)
T 2pm7_B 198 ---------------------------------------------------------------STLEGHSDWVRDVAWSP 214 (297)
T ss_dssp ---------------------------------------------------------------EEECCCSSCEEEEEECC
T ss_pred ---------------------------------------------------------------EEecCCCCceEEEEECC
Confidence 01234556678899999
Q ss_pred CC----cEEEEECCCeEEEEcCC-CC---eeeEe--ecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 430 DG----MIWTGGANGLLLQWDPN-GN---RLQDF--QYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 430 dg----~l~Sgs~DgtIrlWD~~-g~---~l~tl--~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
++ .|++|+.|++|++||+. +. ....+ ..|...|.++++ +|++|++|+.|++|+||+..
T Consensus 215 ~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 215 TVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 84 48999999999999984 32 22334 468889998865 78999999999999999965
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-24 Score=240.96 Aligned_cols=270 Identities=14% Similarity=0.093 Sum_probs=191.5
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLD 226 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~ 226 (838)
+.|+.|+|||+.+..... .....+ ..| .++|.|++|+| ++++|++|+.||+|++||+.++..
T Consensus 54 ~~~g~i~v~~~~~~~~~~-------------~~~~~~--~~h-~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~- 116 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVD-------------KNVPLV--CGH-TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL- 116 (402)
T ss_dssp SSSCCEEEEETTCCEECC-------------TTCCCB--CCC-SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC-
T ss_pred cCCCEEEEEECccCCCCC-------------CCCceE--ecC-CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC-
Confidence 568999999986431110 001111 123 78999999999 999999999999999999987520
Q ss_pred CCCCcceeEEeccccccEEEEEEecCC-C-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceecc
Q 003217 227 SDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (838)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 304 (838)
.....+....+.+|...|++|+|+|+| . |+||+.|++|++||+.+++....+.. .+|
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----------------~~~---- 175 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP-----------------DVH---- 175 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT-----------------TTC----
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec-----------------CCC----
Confidence 000013456789999999999999998 4 78999999999999977543332210 011
Q ss_pred ceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE-ecCCceEEeeecccCcccccccceeeEEEecCCC
Q 003217 305 GFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF-NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (838)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~ 382 (838)
...+.+++.++++..+++++ +++|++||+++++++..+ ..|..
T Consensus 176 ------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------------------------- 220 (402)
T 2aq5_A 176 ------PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG----------------------------- 220 (402)
T ss_dssp ------CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCS-----------------------------
T ss_pred ------CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCC-----------------------------
Confidence 34678888888888888776 689999999998876654 22110
Q ss_pred CcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEE---ECCCeEEEEcC-CCCe-eeEee
Q 003217 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG---GANGLLLQWDP-NGNR-LQDFQ 456 (838)
Q Consensus 383 ~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sg---s~DgtIrlWD~-~g~~-l~tl~ 456 (838)
..+..+++++++. +++| +.|++|++||+ +++. +....
T Consensus 221 -------------------------------------~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~ 263 (402)
T 2aq5_A 221 -------------------------------------TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE 263 (402)
T ss_dssp -------------------------------------SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE
T ss_pred -------------------------------------CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe
Confidence 0133567888888 4566 58999999999 4543 44433
Q ss_pred -cCCccEEEEEE--cCCEEE-EEeeCCeEEEEeCC-Ccc-ccccccc--ccCEEEEEeCCCEEEEEcCCCCeeeeecCC
Q 003217 457 -YLPFAVQCLCT--FGSQIW-VGYMNGIVQVLDLE-GNL-LGGWVAH--SSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 457 -~H~~~V~sls~--dG~~La-sGs~DgtIrlWD~~-g~~-i~~l~gH--~~~V~sla~dg~~l~S~S~DgtIrlWdl~s 527 (838)
.|...|.++++ +|++|+ +|+.|++|++||+. ++. +..+..| ...|.++++.++..+.++.|+.+++|++..
T Consensus 264 ~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~ 342 (402)
T 2aq5_A 264 LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHE 342 (402)
T ss_dssp CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEET
T ss_pred ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecceeEEEEEcCC
Confidence 46777887754 688886 55579999999987 442 5566555 589999987554434456788999999865
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=234.75 Aligned_cols=240 Identities=13% Similarity=0.113 Sum_probs=164.2
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC--CCCEEEE
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~--dg~~LaS 208 (838)
.+.+++.+ ++.|.+ +.|++|||||+.+.... + ...+ ..| .++|.+++|++ ++++|+|
T Consensus 15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~--------------~~~l--~gH-~~~V~~v~~~~~~~~~~l~s 76 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-L--------------IADL--RGH-EGPVWQVAWAHPMYGNILAS 76 (316)
T ss_dssp CEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-E--------------EEEE--ECC-SSCEEEEEECCGGGSSCEEE
T ss_pred eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-E--------------EEEE--cCC-CccEEEEEeCCCCCCCEEEE
Confidence 45566654 556666 56999999998653211 0 0011 123 78999999986 4899999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC--CC-EEEeeCCCcEEEEECCCcceeeecCCCceee
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~ 285 (838)
|+.|++|++||+.++. ......+.+|.++|++|+|+|+ |. |++|+.|++|++||+.+.........
T Consensus 77 ~s~D~~v~iWd~~~~~------~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~----- 145 (316)
T 3bg1_A 77 CSYDRKVIIWREENGT------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKI----- 145 (316)
T ss_dssp EETTSCEEEECCSSSC------CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCB-----
T ss_pred EECCCEEEEEECCCCc------ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeee-----
Confidence 9999999999998752 1345678899999999999998 65 89999999999999865321100000
Q ss_pred eEEEEeeceeecccceeccceeeeecCCeEEEEEcC-----------------CCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-----------------SRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 286 ~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-----------------~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
+.+| ...+.++++++ .+..+++++ |++|++||+.++.....
T Consensus 146 -----------~~~h----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~ 204 (316)
T 3bg1_A 146 -----------NNAH----------TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE 204 (316)
T ss_dssp -----------TTSS----------SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEE
T ss_pred -----------eccc----------cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccce
Confidence 0011 01111112211 134667766 67899999864321000
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
+ ..+..|...|.+++|
T Consensus 205 ~----------------------------------------------------------------~~l~~h~~~V~~v~~ 220 (316)
T 3bg1_A 205 E----------------------------------------------------------------QKLEAHSDWVRDVAW 220 (316)
T ss_dssp E----------------------------------------------------------------ECCBCCSSCEEEEEC
T ss_pred e----------------------------------------------------------------eecccCCCceEEEEe
Confidence 0 012345556778889
Q ss_pred cCCC-----cEEEEECCCeEEEEcCCC----C-eeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 428 SIDG-----MIWTGGANGLLLQWDPNG----N-RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 428 S~dg-----~l~Sgs~DgtIrlWD~~g----~-~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
+|++ .|++|+.|++|++||+.. + ..+.+..|...|+++++ +|++|++|+.|++|+||+..
T Consensus 221 sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 221 APSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred cCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 8875 489999999999999832 1 33556789999999875 68899999999999999964
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.93 E-value=8e-24 Score=234.79 Aligned_cols=283 Identities=13% Similarity=0.111 Sum_probs=196.6
Q ss_pred eeEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC----C---CE
Q 003217 134 FLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA----S---GV 205 (838)
Q Consensus 134 ~~~~l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d----g---~~ 205 (838)
.+.+++.+.+.|++ +.|+.|++||+.+...... .........| ..+|.|++|+|+ + ++
T Consensus 18 ~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~-------------~~~~~~~~~h-~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 18 DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENP-------------KDKSYSHFVH-KSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp CEEEEEECSSEEEEEETTSEEEEEESBCCTTCCG-------------GGGEEEEECC-TTCEEEEEEEEEEETTTEEEEE
T ss_pred CeEEEEecCCeEEEEcCCCEEEEEECCCcccccC-------------CCcceEEecC-CCcEEEEEEecccccCCccccE
Confidence 56677777776666 5689999999976431100 0000111123 789999999999 9 99
Q ss_pred EEEEeCCCcEEEEECCCCccCCCCCcce-----eEEeccc-----cccEEEEEEe----cCCC--EEEeeCCCcEEEEEC
Q 003217 206 VWSGHRDGRIMCWKMNARLLDSDDGFGE-----VLSWQAH-----RGPVLSLCIS----SYGD--LWSGSEGGGIKIWPW 269 (838)
Q Consensus 206 LaSGs~DGtIrvWd~~~g~~~~~~~~~~-----~~~l~gH-----~~~V~slafs----~dG~--L~SgS~DgtIrvWd~ 269 (838)
|++|+.||+|++|++.++ +. ...+.+| ...|++++|+ |++. |++|+.|+.|++||+
T Consensus 84 l~s~~~dg~i~iw~~~~~--------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITRE--------DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp EEEEETTSCEEEEEEEEC--------TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred EEEEcCCCCEEEEEccCC--------cccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 999999999999999886 33 6778888 5999999999 9886 679999999999999
Q ss_pred CC------cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCc
Q 003217 270 EA------IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR 342 (838)
Q Consensus 270 ~~------~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg 342 (838)
.+ ..... +.+.. . +.+.. .....+...+.++++.+++ .+++++ ++.|++||++++
T Consensus 156 ~~~~~~~~~~~~~-~~~~~----~---------~~~~~---~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 217 (397)
T 1sq9_A 156 HPFADESNSLTLN-WSPTL----E---------LQGTV---ESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL 217 (397)
T ss_dssp ESSSSHHHHTTTC-CCCEE----E---------EEEEE---CCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT
T ss_pred Cccccccccceee-ccCcc----e---------eeeee---ccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC
Confidence 66 32111 10000 0 00000 0000114457788888888 888777 578999999999
Q ss_pred cEEEEEec---C---CceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCC---cEEEEec--
Q 003217 343 ELLKVFNI---D---GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD---AVRRVAA-- 411 (838)
Q Consensus 343 ~~l~~l~~---~---~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~---~v~~v~~-- 411 (838)
+++..+.. | ...+..+.+++ .+..++++..+ +..+++.
T Consensus 218 ~~~~~~~~~~~h~~~~~~i~~i~~~~-------------------------------~~~~l~~~~~d~~~g~i~i~d~~ 266 (397)
T 1sq9_A 218 RPLYNFESQHSMINNSNSIRSVKFSP-------------------------------QGSLLAIAHDSNSFGCITLYETE 266 (397)
T ss_dssp EEEEEEECCC---CCCCCEEEEEECS-------------------------------STTEEEEEEEETTEEEEEEEETT
T ss_pred ceeEEEeccccccccCCccceEEECC-------------------------------CCCEEEEEecCCCCceEEEEECC
Confidence 99888876 4 33333333333 23333344444 3333332
Q ss_pred c----Ccccc-------------CCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEee------cC--------
Q 003217 412 K----GGFGD-------------DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ------YL-------- 458 (838)
Q Consensus 412 ~----g~~~~-------------~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~------~H-------- 458 (838)
. ..+.. |...|.+++++|++. |++|+.|++|++||+ +++++.++. +|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~ 346 (397)
T 1sq9_A 267 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD 346 (397)
T ss_dssp TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBC
T ss_pred CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccc
Confidence 1 12223 678899999999987 789999999999999 789999999 88
Q ss_pred -------CccEEEEEE--cC----------CEEEEEeeCCeEEEEeCC
Q 003217 459 -------PFAVQCLCT--FG----------SQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 459 -------~~~V~sls~--dG----------~~LasGs~DgtIrlWD~~ 487 (838)
...|+++++ +| ++|++|+.||.|++||++
T Consensus 347 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 347 EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 999999865 66 699999999999999986
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=243.50 Aligned_cols=305 Identities=13% Similarity=0.099 Sum_probs=198.9
Q ss_pred CceeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCce-eeecCC------------CCeE
Q 003217 132 GCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFK-ESVKGV------------SSVM 195 (838)
Q Consensus 132 ~~~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~------------~~V~ 195 (838)
...+.+++.+ ++.|.+ +.|+.|+|||+.+...... ... ....... ...| . .+|.
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~--------~~~-~~~~~~~~~~~h-~~~~~~~~~~~~~~~V~ 97 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS--------HSR-GEYNVYSTFQSH-EPEFDYLKSLEIEEKIN 97 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C--------CCC-CCEEEEEEEECC-CCEEEGGGTEEECCCCC
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc--------ccc-cceeEecccccc-cccccccccccccCceE
Confidence 4467777766 345655 4689999999976432110 000 0000000 1112 4 7899
Q ss_pred EEEEcCCC--CEEEEEeCCCcEEEEECCCCccC-------------------CCCCc------------ceeEE-ecccc
Q 003217 196 CMVGDEAS--GVVWSGHRDGRIMCWKMNARLLD-------------------SDDGF------------GEVLS-WQAHR 241 (838)
Q Consensus 196 ~la~s~dg--~~LaSGs~DGtIrvWd~~~g~~~-------------------~~~~~------------~~~~~-l~gH~ 241 (838)
+++|+|++ .+|++|+.||+|++||+.++... ....+ ..... ..+|.
T Consensus 98 ~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 177 (447)
T 3dw8_B 98 KIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT 177 (447)
T ss_dssp EEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS
T ss_pred EEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC
Confidence 99999998 89999999999999998763100 00000 00112 36899
Q ss_pred ccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEc
Q 003217 242 GPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD 320 (838)
Q Consensus 242 ~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~ 320 (838)
..|++++|+|+|+ |++| .|++|++||+.+....+.... .....+.+| ...+.+++++
T Consensus 178 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~-----------~~~~~~~~~----------~~~v~~~~~~ 235 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVD-----------IKPANMEEL----------TEVITAAEFH 235 (447)
T ss_dssp SCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEE-----------CCCSSGGGC----------CCCEEEEEEC
T ss_pred cceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeee-----------ccccccccc----------CcceEEEEEC
Confidence 9999999999998 6788 799999999974322221100 000001112 4568889998
Q ss_pred CCC-CEEEEeC-CCcEEEEeccCccE----EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeec
Q 003217 321 HSR-AKVWSAG-FLSFALWDARTREL----LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR 394 (838)
Q Consensus 321 ~~~-~~V~s~s-~~tI~lWD~~tg~~----l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~ 394 (838)
+++ ..+++++ +++|++||+++++. +.++..+.... .
T Consensus 236 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------------------------~----------- 277 (447)
T 3dw8_B 236 PNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPS---------------------------N----------- 277 (447)
T ss_dssp SSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-------------------------------------------
T ss_pred CCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcc---------------------------c-----------
Confidence 887 7788776 67899999998875 34443221100 0
Q ss_pred CcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-C-CCeeeEeecCCccE---------
Q 003217 395 SRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAV--------- 462 (838)
Q Consensus 395 ~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~-g~~l~tl~~H~~~V--------- 462 (838)
...+..+...|.+++++|+|. |++++. ++|++||+ + ++++.++.+|...+
T Consensus 278 -----------------~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 278 -----------------RSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp -----------------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred -----------------cccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence 001234556788999999998 677777 99999999 5 88999999986432
Q ss_pred --------EEEEEcCCEEEEEeeCCeEEEEeCCCcccccccc---------------------------------cccCE
Q 003217 463 --------QCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVA---------------------------------HSSPV 501 (838)
Q Consensus 463 --------~sls~dG~~LasGs~DgtIrlWD~~g~~i~~l~g---------------------------------H~~~V 501 (838)
.+++++|++|++|+.||+|++||+.+.....+.+ +...|
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 419 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKI 419 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCC
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCce
Confidence 2455689999999999999999987432223332 34567
Q ss_pred EEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 502 IKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 502 ~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
..+++ ++.+|++++.|+ +.+|.-
T Consensus 420 ~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 420 LHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred eEEEECCCCCEEEEEecce-eeeecc
Confidence 77875 677888888775 778763
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-24 Score=232.10 Aligned_cols=240 Identities=19% Similarity=0.220 Sum_probs=175.1
Q ss_pred CCCeEEEEEcCCCC-EEEEEeC---CCcEEEEECCCCccCCCCCccee-EEeccccccEEEEEEecC---CC-EEEeeCC
Q 003217 191 VSSVMCMVGDEASG-VVWSGHR---DGRIMCWKMNARLLDSDDGFGEV-LSWQAHRGPVLSLCISSY---GD-LWSGSEG 261 (838)
Q Consensus 191 ~~~V~~la~s~dg~-~LaSGs~---DGtIrvWd~~~g~~~~~~~~~~~-~~l~gH~~~V~slafs~d---G~-L~SgS~D 261 (838)
..+|.|++|+|++. ++++|+. ||+|++||+.++ +.. ....+|..+|++++|+|+ |. |++|+.|
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG--------DLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS--------SEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC--------cccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 78999999999985 5667777 999999999986 232 233489999999999998 45 8999999
Q ss_pred CcEEEEECCCcc-eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEE------EcCCCCEEEEeC-CCc
Q 003217 262 GGIKIWPWEAIE-KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL------SDHSRAKVWSAG-FLS 333 (838)
Q Consensus 262 gtIrvWd~~~~~-~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~la------s~~~~~~V~s~s-~~t 333 (838)
++|++||+.+.. ....+.. | ...+.++. +++++..+++++ +++
T Consensus 90 g~i~iwd~~~~~~~~~~~~~-------------------~----------~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~ 140 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKG-------------------H----------KEIINAIDGIGGLGIGEGAPEIVTGSRDGT 140 (357)
T ss_dssp SCEEEECTTSCSSCSEEECC-------------------C----------SSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred CeEEEEeCCCCCccEEEEEe-------------------c----------ccceEEEeeccccccCCCccEEEEEeCCCe
Confidence 999999997754 2222211 1 23344442 345666777776 678
Q ss_pred EEEEeccCcc-EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc
Q 003217 334 FALWDARTRE-LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK 412 (838)
Q Consensus 334 I~lWD~~tg~-~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~ 412 (838)
|++||+.+++ .+..+..+..
T Consensus 141 i~vwd~~~~~~~~~~~~~~~~----------------------------------------------------------- 161 (357)
T 3i2n_A 141 VKVWDPRQKDDPVANMEPVQG----------------------------------------------------------- 161 (357)
T ss_dssp EEEECTTSCSSCSEEECCCTT-----------------------------------------------------------
T ss_pred EEEEeCCCCCCcceeccccCC-----------------------------------------------------------
Confidence 9999998876 3333322110
Q ss_pred CccccCCCceEEEE----EcCCCc-EEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE-----cCCEEEEEeeCCeEE
Q 003217 413 GGFGDDNRRTEALT----TSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT-----FGSQIWVGYMNGIVQ 482 (838)
Q Consensus 413 g~~~~~~~~v~ala----~S~dg~-l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~-----dG~~LasGs~DgtIr 482 (838)
.....+.+++ +++++. +++|+.|+.|++||+..........|...|.++++ ++.+|++|+.||.|+
T Consensus 162 ----~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 162 ----ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp ----SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred ----CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 0011233344 667776 78999999999999954333455678999999975 578999999999999
Q ss_pred EEeCC-Cccccccc-----ccccCEEEEEe--CCC-EEEEEcCCCCeeeeecCCCCC
Q 003217 483 VLDLE-GNLLGGWV-----AHSSPVIKMAV--GAG-YIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 483 lWD~~-g~~i~~l~-----gH~~~V~sla~--dg~-~l~S~S~DgtIrlWdl~s~~~ 530 (838)
+||++ ++++..+. +|...|.++++ +++ ++++++.|+.|++||+.....
T Consensus 238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 294 (357)
T 3i2n_A 238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQ 294 (357)
T ss_dssp EEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSC
T ss_pred EEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcc
Confidence 99987 55555554 99999999985 555 799999999999999876543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-23 Score=232.01 Aligned_cols=265 Identities=9% Similarity=0.051 Sum_probs=182.9
Q ss_pred eeEEEEec--C-CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC-CCCEEEE
Q 003217 134 FLRTIVCT--E-EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~--~-~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~-dg~~LaS 208 (838)
.+.+++.. + ..|++ +.|+.|+|||+.+...... +....| ..+|.|++|+| ++++|++
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------~~~~~h-~~~v~~~~~~~~~~~~l~s 136 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-----------------IQGMGP-GDAITGMKFNQFNTNQLFV 136 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-----------------ECCCST-TCBEEEEEEETTEEEEEEE
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-----------------eecCCc-CCceeEEEeCCCCCCEEEE
Confidence 45566654 3 34555 5689999999975432211 111123 78999999999 7899999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEec---cccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCcee
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQ---AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~---gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~ 284 (838)
|+.||+|++||+.+. ....+. +|...|++++|+|+++ |++|+.|++|++||+.. .....+
T Consensus 137 ~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~------ 200 (383)
T 3ei3_B 137 SSIRGATTLRDFSGS---------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG-HEIFKE------ 200 (383)
T ss_dssp EETTTEEEEEETTSC---------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS-CEEEEE------
T ss_pred EeCCCEEEEEECCCC---------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC-CEEEEe------
Confidence 999999999999863 444554 4458999999999998 78999999999999842 221111
Q ss_pred eeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeC-CCcEEEEeccC----ccEEEEEecCCceEEee
Q 003217 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDART----RELLKVFNIDGQIENRV 358 (838)
Q Consensus 285 ~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~~tI~lWD~~t----g~~l~~l~~~~~~~~~~ 358 (838)
.+| ...+.++++.+++. .+++++ +++|++||+++ +.++..+. +...+..+
T Consensus 201 -------------~~h----------~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~ 256 (383)
T 3ei3_B 201 -------------KLH----------KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-HEKPVNAA 256 (383)
T ss_dssp -------------ECS----------SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-CSSCEEEE
T ss_pred -------------ccC----------CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec-CCCceEEE
Confidence 112 45678888888887 777776 67999999998 67777663 43333444
Q ss_pred ecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc--C----ccc----------------
Q 003217 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--G----GFG---------------- 416 (838)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g----~~~---------------- 416 (838)
.+++. ++..++++..++..+++.. + .+.
T Consensus 257 ~~s~~------------------------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (383)
T 3ei3_B 257 YFNPT------------------------------DSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT 306 (383)
T ss_dssp EECTT------------------------------TSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred EEcCC------------------------------CCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEe
Confidence 44440 2222233333333333320 0 000
Q ss_pred -cCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeec--CCccEEEEE--EcCCEEEEEeeCCeEEEEeCCC
Q 003217 417 -DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY--LPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEG 488 (838)
Q Consensus 417 -~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~--H~~~V~sls--~dG~~LasGs~DgtIrlWD~~g 488 (838)
.....+..++++|||++ +|+.|++|++||+ ++++++++.+ |...+.+++ ++|++|++|+ |++|+|||+++
T Consensus 307 ~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 307 WHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 11234556888999988 9999999999999 7999999987 456666655 4789999996 99999999863
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-23 Score=255.00 Aligned_cols=306 Identities=14% Similarity=0.150 Sum_probs=214.9
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+.+++.+ +..|.+ +.|+.|+|||+.+...... + ..| .++|.|++|+|++++|++|+
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~-----------------~--~~~-~~~v~~~~~s~~~~~l~~~~ 74 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS-----------------I--QVT-ETPVRAGKFIARKNWIIVGS 74 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE-----------------E--ECC-SSCEEEEEEEGGGTEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE-----------------E--ecC-CCcEEEEEEeCCCCEEEEEe
Confidence 35555554 445555 4588999999876433211 1 123 77999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
.||+|++||+.++ +....+.+|.+.|++++|+|+|. |++|+.||+|++|++.+.......
T Consensus 75 ~dg~i~vw~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~----------- 135 (814)
T 3mkq_A 75 DDFRIRVFNYNTG--------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT----------- 135 (814)
T ss_dssp TTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE-----------
T ss_pred CCCeEEEEECCCC--------cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE-----------
Confidence 9999999999987 67788899999999999999997 889999999999999764221110
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
+.+| ...+.++++++ ++..+++++ +++|++||+.+++....+..+..
T Consensus 136 -------~~~~----------~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~-------------- 184 (814)
T 3mkq_A 136 -------FEGH----------EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE-------------- 184 (814)
T ss_dssp -------EECC----------SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCT--------------
T ss_pred -------EcCC----------CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCC--------------
Confidence 0111 34577888877 566777666 68999999988776555543210
Q ss_pred cccceeeEEEecCCCCcceeeeeEee--cCcceeeecCCcEEEEec--cC----ccccCCCceEEEEEcCCCc-EEEEEC
Q 003217 368 MEDEFKTKIVTSSKKDKAQSSFGFFQ--RSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGM-IWTGGA 438 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~--~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~ala~S~dg~-l~Sgs~ 438 (838)
.....+.+.+ .+..++++..++..+++. .+ .+..|...|.+++++|++. +++|+.
T Consensus 185 ----------------~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 248 (814)
T 3mkq_A 185 ----------------RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248 (814)
T ss_dssp ----------------TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred ----------------CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence 0111223333 344556666666666654 11 2345777889999999986 789999
Q ss_pred CCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCC--EEEEEeeCCeEEEEeCCC-c----------cc-----------
Q 003217 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGS--QIWVGYMNGIVQVLDLEG-N----------LL----------- 491 (838)
Q Consensus 439 DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~--~LasGs~DgtIrlWD~~g-~----------~i----------- 491 (838)
||+|++||+ +++++.++..|...|.++++ +|+ .+++ +.++.+.+|++.. . .+
T Consensus 249 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 327 (814)
T 3mkq_A 249 DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIAS-GFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASD 327 (814)
T ss_dssp TSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEE-EETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTC
T ss_pred CCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEE-EeCCCEEEEEcCCCCceeEECCCCCEEEECccccccee
Confidence 999999999 68999999999999999875 455 3444 4577788888541 1 11
Q ss_pred ----------------------ccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecCC
Q 003217 492 ----------------------GGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 492 ----------------------~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s 527 (838)
..+..|...|.+++ ++|+++++++ |+.+++|++..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 328 IFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp EEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred eeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcc
Confidence 11133444566666 4777888877 88899998643
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-23 Score=224.18 Aligned_cols=278 Identities=13% Similarity=0.102 Sum_probs=199.0
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+.+++.+ ++.|++ +.|+.|++||+.+...... + ..| ..+|.+++|+|++++|++|+
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-----------------~--~~h-~~~v~~~~~~~~~~~l~s~~ 93 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT-----------------L--DGH-TGTIWSIDVDCFTKYCVTGS 93 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE-----------------E--CCC-SSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh-----------------h--hhc-CCcEEEEEEcCCCCEEEEEe
Confidence 45566654 445665 4689999999876443211 1 123 77999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCC-----CcEEEEECCCcceeeecCCC-ce
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG-----GGIKIWPWEAIEKALSLKPE-ER 283 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D-----gtIrvWd~~~~~~~~~~~~~-~~ 283 (838)
.||+|++||+.++ +....+. |...|.+++|+|+|+ |++++.+ +.|++||+........+... ..
T Consensus 94 ~dg~i~iwd~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 164 (369)
T 3zwl_B 94 ADYSIKLWDVSNG--------QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE 164 (369)
T ss_dssp TTTEEEEEETTTC--------CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred CCCeEEEEECCCC--------cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence 9999999999987 5556665 889999999999998 7888888 99999998653321111000 00
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccC-ccEEEEEecCCceEEeeecc
Q 003217 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART-RELLKVFNIDGQIENRVDMS 361 (838)
Q Consensus 284 ~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~t-g~~l~~l~~~~~~~~~~~~s 361 (838)
... .+..+. ....+.+++.++++..+++++ ++.|++||+.+ ++.+..+..+...+..
T Consensus 165 ~~~---------~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~---- 223 (369)
T 3zwl_B 165 PIH---------KIITHE--------GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISD---- 223 (369)
T ss_dssp CSE---------EEECCT--------TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEE----
T ss_pred eee---------eccCCc--------CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeE----
Confidence 000 000010 012678888888888888776 57899999999 6777777655443322
Q ss_pred cCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc--Ccc---ccCCCceEEEEEcCCCc-EEE
Q 003217 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--GGF---GDDNRRTEALTTSIDGM-IWT 435 (838)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g~~---~~~~~~v~ala~S~dg~-l~S 435 (838)
+.+.+++..++++..++..+++.. +.. ..+...+..++++|++. +++
T Consensus 224 ---------------------------~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 276 (369)
T 3zwl_B 224 ---------------------------MQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIIL 276 (369)
T ss_dssp ---------------------------EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEE
T ss_pred ---------------------------EEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEE
Confidence 233334444555556665555541 111 12556788899999998 778
Q ss_pred EECCC--------------eEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCC
Q 003217 436 GGANG--------------LLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG 488 (838)
Q Consensus 436 gs~Dg--------------tIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g 488 (838)
++.++ .|++||. +++++..+.+|...|+++++ +|++|++|+.||+|++||++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 277 GGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp EECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred eecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 88887 8999999 78999999999999999876 688999999999999999873
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-24 Score=231.04 Aligned_cols=264 Identities=11% Similarity=0.040 Sum_probs=162.0
Q ss_pred eEEEEEcCCCC---EEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccccc-------------------------EE
Q 003217 194 VMCMVGDEASG---VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGP-------------------------VL 245 (838)
Q Consensus 194 V~~la~s~dg~---~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~-------------------------V~ 245 (838)
|.++-+-..|- .|++++. .+|++|+..++ ...+...+|.+|+.+ |+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 115 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDA-----WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIR 115 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSS-----SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEE
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCC-----ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceE
Confidence 44454443333 5667766 58999998875 234567778877754 55
Q ss_pred EEEEecC----CC-EEEeeCCCcEEEEECCCcceeee-cCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEE
Q 003217 246 SLCISSY----GD-LWSGSEGGGIKIWPWEAIEKALS-LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS 319 (838)
Q Consensus 246 slafs~d----G~-L~SgS~DgtIrvWd~~~~~~~~~-~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las 319 (838)
+|+|+|| ++ +++++. +++||++.+++...+ ...+...+..+.+..... .......++..+..+++
T Consensus 116 sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~-------~~~s~~~~~~~v~~l~f 186 (356)
T 2w18_A 116 ALFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGG-------GKENQFLMPPEETILTF 186 (356)
T ss_dssp EECC------CCEEEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSC-------EEEEEEECCCSSCEEEE
T ss_pred EEEECCCccccccEEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCCc-------eeeeeccCCCceeeEEe
Confidence 6666777 55 567664 478888865443333 223333433332211100 00011123455666666
Q ss_pred cC---CCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecC
Q 003217 320 DH---SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRS 395 (838)
Q Consensus 320 ~~---~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~ 395 (838)
++ ++..+++++ |++|+|||++||+++++|.++..... ....+.|++++
T Consensus 187 s~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~----------------------------~v~~vafSpdG 238 (356)
T 2w18_A 187 AEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA----------------------------SVCHKAYSEMG 238 (356)
T ss_dssp EEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---C----------------------------CCEEEEEEETT
T ss_pred eccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCccee----------------------------eeEEEEECCCC
Confidence 55 667888877 68999999999999999875432100 00012333332
Q ss_pred cceeeecCCcEEEEeccCccccCCCceEEEEEcCCC--cEEEEECCCeEEEEcC-CCCeeeEe-----ecCCccEEEEEE
Q 003217 396 RNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG--MIWTGGANGLLLQWDP-NGNRLQDF-----QYLPFAVQCLCT 467 (838)
Q Consensus 396 ~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg--~l~Sgs~DgtIrlWD~-~g~~l~tl-----~~H~~~V~sls~ 467 (838)
...++++ .+++ .++||+.|++|++||. +|+++.++ .+|...+.+...
T Consensus 239 ~~lvs~s-------------------------~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~ 293 (356)
T 2w18_A 239 LLFIVLS-------------------------HPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV 293 (356)
T ss_dssp EEEEEEC-------------------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE
T ss_pred CEEEEec-------------------------cCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc
Confidence 2111111 0111 2679999999999999 78888776 378777777777
Q ss_pred cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEE-EEE--eCCCEEEEEcCCCCeeeeec
Q 003217 468 FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVI-KMA--VGAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 468 dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~-sla--~dg~~l~S~S~DgtIrlWdl 525 (838)
+|..+++|+.|++|+|||+. |++++++.+|.+.|. +++ +||++|+|||.|++||+||+
T Consensus 294 sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 294 KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 79999999999999999997 889999999998765 355 58899999999999999995
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=263.38 Aligned_cols=238 Identities=12% Similarity=0.053 Sum_probs=184.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC--CC-EEEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvW 267 (838)
.++|.|++|+|+|++|++|+.||+|++||+.++. .+....+.+|.++|++|+|+++ |+ |+||+.||+|++|
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~------~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE------EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCCC------CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 7899999999999999999999999999997431 1556788999999999999988 76 7899999999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC--CCEEEEeC-CCcEEEEeccCccE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~V~s~s-~~tI~lWD~~tg~~ 344 (838)
|+.++..... . .+.+| ...+.+++++++ +..+++++ +++|++||+.++..
T Consensus 83 d~~~~~~~~~--------~---------~~~~h----------~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~ 135 (753)
T 3jro_A 83 KEENGRWSQI--------A---------VHAVH----------SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135 (753)
T ss_dssp EEETTEEEEE--------E---------EECCC----------SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC
T ss_pred ECCCCccccc--------c---------cccCC----------CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC
Confidence 9866431100 0 01111 456888888887 77888776 67999999987632
Q ss_pred E--EEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCce
Q 003217 345 L--KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (838)
Q Consensus 345 l--~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (838)
. ..+.. |...|
T Consensus 136 ~~~~~~~~-------------------------------------------------------------------~~~~v 148 (753)
T 3jro_A 136 TSPIIIDA-------------------------------------------------------------------HAIGV 148 (753)
T ss_dssp CCCEEEEC-------------------------------------------------------------------CSSCE
T ss_pred cceeEeec-------------------------------------------------------------------CCCce
Confidence 1 11111 11223
Q ss_pred EEEEEcC-------------CC-cEEEEECCCeEEEEcC-CC----CeeeEeecCCccEEEEEE--c---CCEEEEEeeC
Q 003217 423 EALTTSI-------------DG-MIWTGGANGLLLQWDP-NG----NRLQDFQYLPFAVQCLCT--F---GSQIWVGYMN 478 (838)
Q Consensus 423 ~ala~S~-------------dg-~l~Sgs~DgtIrlWD~-~g----~~l~tl~~H~~~V~sls~--d---G~~LasGs~D 478 (838)
.+++++| ++ .+++|+.||+|++||+ ++ .++.++.+|...|+++++ + |++|++|+.|
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D 228 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC
Confidence 3344444 34 4899999999999999 55 566788899999999975 5 7899999999
Q ss_pred CeEEEEeCCC-c-----ccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCC
Q 003217 479 GIVQVLDLEG-N-----LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 479 gtIrlWD~~g-~-----~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
|+|++||+.. + .+....+|.+.|+++++ +++++++++.||.|++|++...
T Consensus 229 g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9999999863 2 45556679999998885 7889999999999999998753
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.8e-23 Score=217.84 Aligned_cols=266 Identities=17% Similarity=0.252 Sum_probs=188.9
Q ss_pred eeEEEEe-cCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 134 FLRTIVC-TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 134 ~~~~l~~-~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
.+.+++. +++.|++ +.|+.|++||+.+...... ...+ ..+|.+++|+|++++|++|+.
T Consensus 20 ~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~-~~~v~~~~~~~~~~~l~~~~~ 79 (313)
T 3odt_A 20 DVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTV-------------------VYTG-QGFLNSVCYDSEKELLLFGGK 79 (313)
T ss_dssp CEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEE-------------------EEEC-SSCEEEEEEETTTTEEEEEET
T ss_pred CcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEE-------------------eecC-CccEEEEEECCCCCEEEEecC
Confidence 3445544 4556666 5689999999865432211 1123 779999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEe
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~ 291 (838)
||.|++|++.... ..+....+.+|...|++++|+ ...|++|+.|++|++||. ......+..
T Consensus 80 dg~i~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d~--~~~~~~~~~----------- 140 (313)
T 3odt_A 80 DTMINGVPLFATS-----GEDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWKE--GSLVYNLQA----------- 140 (313)
T ss_dssp TSCEEEEETTCCT-----TSCC-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEET--TEEEEEEEC-----------
T ss_pred CCeEEEEEeeecC-----CCCcccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEcC--CcEEEeccc-----------
Confidence 9999999987641 124466788999999999993 234899999999999993 222111111
Q ss_pred eceeecccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcEEEEeccCccEEEEEec-CCceEEeeecccCccccc
Q 003217 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNI-DGQIENRVDMSLLPDFAM 368 (838)
Q Consensus 292 ~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~-~~~~~~~~~~s~~~~~~~ 368 (838)
+ ...+..+...+ ++..+++++ ++.|++|| .++.+..+.. +...
T Consensus 141 --------~----------~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~-------------- 186 (313)
T 3odt_A 141 --------H----------NASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDV-------------- 186 (313)
T ss_dssp --------C----------SSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSC--------------
T ss_pred --------C----------CCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCccc--------------
Confidence 1 33455555544 566777666 67899999 4555555543 2221
Q ss_pred ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC----ccccCCCceEEEEEcCCCcEEEEECCCeE
Q 003217 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGMIWTGGANGLL 442 (838)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~ala~S~dg~l~Sgs~DgtI 442 (838)
...+.+.+.+. .+++..++..+++. .+ .+..|...+.+++++|++++++|+.||+|
T Consensus 187 -----------------i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v 248 (313)
T 3odt_A 187 -----------------VRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTV 248 (313)
T ss_dssp -----------------EEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEE
T ss_pred -----------------EEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEE
Confidence 12234444444 55666666666654 11 34457788999999999999999999999
Q ss_pred EEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Cccc
Q 003217 443 LQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLL 491 (838)
Q Consensus 443 rlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i 491 (838)
++||+ ++++++.+..|...|.++++ +|+ +++|+.||.|++||++ ++.+
T Consensus 249 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 249 RIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred EEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 99999 78999999999999999976 566 6678999999999987 4443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.92 E-value=6.8e-23 Score=224.61 Aligned_cols=271 Identities=12% Similarity=0.048 Sum_probs=192.5
Q ss_pred eEEEEec--CCEEEEe-cCCCEEEEeCCCCc--cccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE
Q 003217 135 LRTIVCT--EEQLWAG-GENGLRVWNLKELY--DESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (838)
Q Consensus 135 ~~~l~~~--~~~l~~g-~d~~vrvWd~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG 209 (838)
+.+++.+ ++.|+++ .|+.|++||+.+.. ... .+. .| ..+|.+++|+|++++|++|
T Consensus 11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~-----------------~~~--~h-~~~v~~~~~~~~~~~l~~~ 70 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-----------------ELK--EH-NGQVTGVDWAPDSNRIVTC 70 (372)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE-----------------EEE--CC-SSCEEEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeee-----------------eec--CC-CCcccEEEEeCCCCEEEEE
Confidence 4444443 4466665 68999999987542 111 111 23 7799999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEE
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~ 288 (838)
+.||+|++||+.++. ......+.+|...|++++|+|+|+ |++|+.|++|++||+.+....... ..
T Consensus 71 ~~dg~i~vwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-------~~- 136 (372)
T 1k8k_C 71 GTDRNAYVWTLKGRT------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC-------KH- 136 (372)
T ss_dssp ETTSCEEEEEEETTE------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE-------EE-
T ss_pred cCCCeEEEEECCCCe------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee-------ee-
Confidence 999999999998752 122445678999999999999998 789999999999999764311000 00
Q ss_pred EEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEecc------------------CccEEEEEe
Q 003217 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR------------------TRELLKVFN 349 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~------------------tg~~l~~l~ 349 (838)
....| ...+.++++.+++..+++++ ++.|++||+. +++++..+.
T Consensus 137 -------~~~~~----------~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
T 1k8k_C 137 -------IKKPI----------RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 199 (372)
T ss_dssp -------ECTTC----------CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred -------eeccc----------CCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC
Confidence 00011 44688888888888888876 6789999965 444444443
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC----ccccCCCceE
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTE 423 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~ 423 (838)
.+.. .+..+.+.+++..++++..++..+++. .+ .+..+...+.
T Consensus 200 ~~~~-------------------------------~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~ 248 (372)
T 1k8k_C 200 SSCG-------------------------------WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLL 248 (372)
T ss_dssp CCSS-------------------------------CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEE
T ss_pred CCCC-------------------------------eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeE
Confidence 3322 223345555555667777777666664 12 3445677899
Q ss_pred EEEEcCCCcEEEEECCCeEEEEcC-C--CC--ee------------------------------------eEe-ecCCcc
Q 003217 424 ALTTSIDGMIWTGGANGLLLQWDP-N--GN--RL------------------------------------QDF-QYLPFA 461 (838)
Q Consensus 424 ala~S~dg~l~Sgs~DgtIrlWD~-~--g~--~l------------------------------------~tl-~~H~~~ 461 (838)
+++++|++.+++++.|+.|++||+ + |+ ++ ..+ .+|...
T Consensus 249 ~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 328 (372)
T 1k8k_C 249 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS 328 (372)
T ss_dssp EEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSC
T ss_pred EEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCC
Confidence 999999999766669999999999 5 31 11 223 489999
Q ss_pred EEEEE---EcC---CEEEEEeeCCeEEEEeCC
Q 003217 462 VQCLC---TFG---SQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 462 V~sls---~dG---~~LasGs~DgtIrlWD~~ 487 (838)
|++++ .+| .+|++|+.||+|++||++
T Consensus 329 v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 329 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp EEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred cceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence 99996 356 899999999999999986
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-24 Score=247.12 Aligned_cols=254 Identities=6% Similarity=-0.037 Sum_probs=192.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (838)
..+|.+|+|+|||++||||+.|++|| |...+ ..+.||.+.|.+|+|+|+| .++++++|+.+
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~-----------~~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~ 75 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYA-----------KDINCNSKNLFHVKEFPLE------FENKLDFELAQ 75 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCC-----------SCCSSBGGGTEEEEEECCC------CCCTTTTSCCC
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--ccccc-----------ceecCCCccEEEEEECCCC------CcceEEEEeCC
Confidence 45899999999999999999999999 64443 3447999999999999998 56666666643
Q ss_pred CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEe
Q 003217 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (838)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~ 349 (838)
.. ..+.+. +...|.+++.+++|..+++++ +++|++||..+ ++..+.
T Consensus 76 ~~-~~~~~~------------------------------~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~ 122 (588)
T 2j04_A 76 QN-GLLNSQ------------------------------PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD 122 (588)
T ss_dssp SS-CSSTTS------------------------------CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC
T ss_pred Cc-eEeecC------------------------------CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc
Confidence 21 111111 134688899999999998887 68999999654 555554
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cCc-----------c-
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGG-----------F- 415 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~-----------~- 415 (838)
|...+ ......++.|++++...++|..+|..++|. .+. +
T Consensus 123 -~~~~~--------------------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~ 175 (588)
T 2j04_A 123 -SKGNL--------------------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIR 175 (588)
T ss_dssp -CSSCS--------------------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEE
T ss_pred -CCCcc--------------------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeee
Confidence 22110 011233577888888888888888877776 222 1
Q ss_pred ---ccCCCceEEEEEcCCCcEEEEECCCeEEEEcCCC-C---eeeEee-cCCccEEEEEEcCCEEEEEeeCCeEEEEeCC
Q 003217 416 ---GDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNG-N---RLQDFQ-YLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 416 ---~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~~g-~---~l~tl~-~H~~~V~sls~dG~~LasGs~DgtIrlWD~~ 487 (838)
.+|...|.+++++||| +++++.|++|++||+.+ + ..+++. +|...|.++++.|++|++++ +++|++||+.
T Consensus 176 ~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~ 253 (588)
T 2j04_A 176 LSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLK 253 (588)
T ss_dssp CSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETT
T ss_pred cccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECC
Confidence 4566799999999999 99999999999999954 4 235674 78899999988788999987 7999999998
Q ss_pred Cccccccc-ccccCEEEEEe----CCCEEEEEcCCCCeeeeecC
Q 003217 488 GNLLGGWV-AHSSPVIKMAV----GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 488 g~~i~~l~-gH~~~V~sla~----dg~~l~S~S~DgtIrlWdl~ 526 (838)
++.+..+. +|.+.|+.|++ |++.+++++.||+ |+|.+.
T Consensus 254 ~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 254 NYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 66553333 89999998876 5567999999999 999974
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-22 Score=222.34 Aligned_cols=331 Identities=12% Similarity=0.095 Sum_probs=193.0
Q ss_pred eeEEEEec---CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC-CCCEEEE
Q 003217 134 FLRTIVCT---EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~---~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~-dg~~LaS 208 (838)
.+.+++.. ++.|++ +.|+.|++||+.+...... ... .............| ..+|.+++|+| ++++|++
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY-----YTC-KAVCSIGRDHPDVH-RYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC-----EEE-CEEEEECTTCTTCC-SSCEEEEEECTTCTTCEEE
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce-----Eec-cccccccccccccC-CCcEEEEEEccCCCcEEEE
Confidence 45555554 345665 4589999999976543221 000 00000000000123 77999999999 7789999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC---C-EEEeeCCCcEEEEECCCcceeeecCCCcee
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG---D-LWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG---~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~ 284 (838)
|+.||+|++||+.++ +....+ .|...+.++.+++.+ . +++|+.|+.|++||+.+......+.
T Consensus 118 ~~~d~~i~iwd~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~----- 183 (408)
T 4a11_B 118 SSFDKTLKVWDTNTL--------QTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ----- 183 (408)
T ss_dssp EETTSEEEEEETTTT--------EEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-----
T ss_pred EeCCCeEEEeeCCCC--------ccceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-----
Confidence 999999999999986 444444 478899999999854 3 7899999999999997654322221
Q ss_pred eeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeC-CCcEEEEeccCcc-EEEEEecCCceEEeeecc
Q 003217 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRE-LLKVFNIDGQIENRVDMS 361 (838)
Q Consensus 285 ~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~~tI~lWD~~tg~-~l~~l~~~~~~~~~~~~s 361 (838)
+| ...+.++++.+++. .+++++ ++.|++||++++. ++..+..+....
T Consensus 184 --------------~~----------~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~------ 233 (408)
T 4a11_B 184 --------------GH----------RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK------ 233 (408)
T ss_dssp --------------CC----------CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS------
T ss_pred --------------CC----------CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccc------
Confidence 11 44678888888777 466665 6899999998875 334443221100
Q ss_pred cCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc--Cccc----c-----CCC-ceEEEEEcC
Q 003217 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--GGFG----D-----DNR-RTEALTTSI 429 (838)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g~~~----~-----~~~-~v~ala~S~ 429 (838)
..... .........+..+.+.+++..++++..++..+++.. +... . ... ....+....
T Consensus 234 ---~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (408)
T 4a11_B 234 ---SQAVE-------SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC 303 (408)
T ss_dssp ---CCCTT-------TSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSS
T ss_pred ---ceeec-------cccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCC
Confidence 00000 000112233446677777777888888887777651 1110 0 001 111233344
Q ss_pred CCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEE
Q 003217 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA 505 (838)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla 505 (838)
.+.+++++.|+.|++||+ +++++..+.+|...|+++++ +|++|++|+.||.|++||++ ++.+.....+... ..+.
T Consensus 304 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~ 382 (408)
T 4a11_B 304 SSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK-SQLN 382 (408)
T ss_dssp SSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------
T ss_pred CceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec-cccc
Confidence 566888888999999999 78999999999999999865 68899999999999999987 5555544443322 2222
Q ss_pred e-CCCEEEEEcCCCCeeeeecC
Q 003217 506 V-GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 506 ~-dg~~l~S~S~DgtIrlWdl~ 526 (838)
. ......+.+.|+.+++|+..
T Consensus 383 ~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 383 PAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ----------------------
T ss_pred cccceeecccCccCceeecCCc
Confidence 2 33345567789999999853
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-22 Score=231.65 Aligned_cols=235 Identities=10% Similarity=0.095 Sum_probs=177.2
Q ss_pred CCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC--CCccCCCCCcceeEEec--cccccEEEEEEecCCC-EEEeeCCCcE
Q 003217 191 VSSVMCMVGDEASGVV-WSGHRDGRIMCWKMN--ARLLDSDDGFGEVLSWQ--AHRGPVLSLCISSYGD-LWSGSEGGGI 264 (838)
Q Consensus 191 ~~~V~~la~s~dg~~L-aSGs~DGtIrvWd~~--~g~~~~~~~~~~~~~l~--gH~~~V~slafs~dG~-L~SgS~DgtI 264 (838)
.+.|.|++|+|++++| ++|+.||+|++||+. ++ +....+. +|...|++|+|+|+|+ |++|+.|+.|
T Consensus 102 ~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v 173 (450)
T 2vdu_B 102 YSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--------NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDV 173 (450)
T ss_dssp CCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--------SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--------ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcE
Confidence 4479999999999996 999999999999998 65 4555555 6779999999999998 7899999999
Q ss_pred EEEECCCcceee-ecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC---CCEEEEeC-CCcEEEEec
Q 003217 265 KIWPWEAIEKAL-SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS---RAKVWSAG-FLSFALWDA 339 (838)
Q Consensus 265 rvWd~~~~~~~~-~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~---~~~V~s~s-~~tI~lWD~ 339 (838)
++|++.+..... ... .+.+| ...+.+++++++ +..|++++ +++|++||+
T Consensus 174 ~~~~~~~~~~~~~~~~----------------~~~~h----------~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~ 227 (450)
T 2vdu_B 174 YSIDINSIPEEKFTQE----------------PILGH----------VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY 227 (450)
T ss_dssp EEEETTSCCCSSCCCC----------------CSEEC----------SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE
T ss_pred EEEecCCcccccccce----------------eeecc----------cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC
Confidence 999986643211 000 01111 446778888887 76777776 679999999
Q ss_pred cCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCC
Q 003217 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (838)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (838)
.+++++..+. .+|.
T Consensus 228 ~~~~~~~~~~------------------------------------------------------------------~~h~ 241 (450)
T 2vdu_B 228 PQCFIVDKWL------------------------------------------------------------------FGHK 241 (450)
T ss_dssp SCTTCEEEEC------------------------------------------------------------------CCCS
T ss_pred CCCceeeeee------------------------------------------------------------------cCCC
Confidence 8877644321 1233
Q ss_pred CceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecC-------------------------CccEEEEEE--cCC
Q 003217 420 RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL-------------------------PFAVQCLCT--FGS 470 (838)
Q Consensus 420 ~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H-------------------------~~~V~sls~--dG~ 470 (838)
..|.+++|+ ++. |++|+.|++|++||+ ++++++++..+ ...|.++++ +|+
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 446678888 776 899999999999999 78988888643 346777755 688
Q ss_pred EEEEEe-eCCeEEEEeC--C-C---cccccccccccCEEEEEeCCC-EEEEEcC-------CCCeeeeecCC
Q 003217 471 QIWVGY-MNGIVQVLDL--E-G---NLLGGWVAHSSPVIKMAVGAG-YIFTLAN-------HGGIRGWNVTS 527 (838)
Q Consensus 471 ~LasGs-~DgtIrlWD~--~-g---~~i~~l~gH~~~V~sla~dg~-~l~S~S~-------DgtIrlWdl~s 527 (838)
+|++++ .|+.|+|||+ . + +++..+.+| +.|.+++++++ .+++.+. +..|++|.+..
T Consensus 321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 999998 8999999999 4 4 467788888 88999997654 4445432 55689988653
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-23 Score=232.61 Aligned_cols=291 Identities=12% Similarity=0.135 Sum_probs=183.3
Q ss_pred eeEEEEecC---CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE
Q 003217 134 FLRTIVCTE---EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (838)
Q Consensus 134 ~~~~l~~~~---~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG 209 (838)
.+.+++... ..|.+ +.|++|+|||+.+.....+ ....+.. .| .++|.|++|+|++++|++|
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-------------~~~~~~~-~h-~~~v~~~~~~~~~~~l~s~ 129 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV-------------YSSSLTY-DC-SSTVTQITMIPNFDAFAVS 129 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC-------------CSCSEEE-EC-SSCEEEEEECTTSSEEEEE
T ss_pred ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc-------------cceeeec-cC-CCCEEEEEEeCCCCEEEEE
Confidence 466666544 35555 5699999999865211100 0001111 23 7899999999999999999
Q ss_pred eCCCcEEEEECC---CCccCCCCCcceeEEecc------------ccccEEEEE--EecCCC-EEEeeCCCcEEEEECCC
Q 003217 210 HRDGRIMCWKMN---ARLLDSDDGFGEVLSWQA------------HRGPVLSLC--ISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 210 s~DGtIrvWd~~---~g~~~~~~~~~~~~~l~g------------H~~~V~sla--fs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
+.||+|++||++ ++ +....+.+ |...+.++. +++++. |++|+.|++|++||+.+
T Consensus 130 s~dg~i~vwd~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 201 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQE--------SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT 201 (437)
T ss_dssp ETTSEEEEEEEEEEEET--------TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT
T ss_pred eCCCEEEEEEeccccCC--------ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 999999999995 33 22222222 556677777 456776 78999999999999977
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEe-
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN- 349 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~- 349 (838)
.+....+... .| ...+.++++++++..+++++ +++|++||+++++++.++.
T Consensus 202 ~~~~~~~~~~-----------------~h----------~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 254 (437)
T 3gre_A 202 LERLQIIENS-----------------PR----------HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF 254 (437)
T ss_dssp CCEEEEEECC-----------------GG----------GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC
T ss_pred CeeeEEEccC-----------------CC----------CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec
Confidence 5433222110 01 45688899988888888877 5789999999999998886
Q ss_pred cCCceEEeeecccC----ccccc--ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--------cCcc
Q 003217 350 IDGQIENRVDMSLL----PDFAM--EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--------KGGF 415 (838)
Q Consensus 350 ~~~~~~~~~~~s~~----~~~~~--~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--------~g~~ 415 (838)
.+...+..+.+.+. ....+ ..+-.+++|... ..+.. ..+.++...+..+.. ...+
T Consensus 255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~ 323 (437)
T 3gre_A 255 GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV-KGHCQ----------YAFINSDEQPSMEHFLPIEKGLEELNF 323 (437)
T ss_dssp TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT-TTEEE----------EEEESSSSCCCGGGGSCBCSSGGGCCC
T ss_pred CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC-CCcEE----------EEEEcCCCCCccceeccccccccccee
Confidence 44433344422221 11100 111111122111 00000 011111111100000 0122
Q ss_pred cc--CCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeec-----------------------------------
Q 003217 416 GD--DNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY----------------------------------- 457 (838)
Q Consensus 416 ~~--~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~----------------------------------- 457 (838)
.+ |...|.+++++++..|++|+.|++|++||+ ++++++.+.+
T Consensus 324 ~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (437)
T 3gre_A 324 CGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDS 403 (437)
T ss_dssp CCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC----------
T ss_pred cccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcc
Confidence 33 666788999994445899999999999999 7888877776
Q ss_pred --CCccEEEEEE--c--CCEEEEEeeCCeEEEEe
Q 003217 458 --LPFAVQCLCT--F--GSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 458 --H~~~V~sls~--d--G~~LasGs~DgtIrlWD 485 (838)
|.+.|+++++ + +.+|++|+.||+|+||+
T Consensus 404 ~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 404 LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999865 4 55999999999999995
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=236.10 Aligned_cols=246 Identities=14% Similarity=0.157 Sum_probs=187.4
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCC--CCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEE
Q 003217 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDS--DDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~--~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIr 265 (838)
.++|.+++|+|+ +.+|++|+.||.|++|++....... .........+.+|.+.|++|+|+|++. |++|+.||+|+
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTIC 207 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence 789999999997 6899999999999999997621000 001256678899999999999999986 78999999999
Q ss_pred EEECCCcceeee-cCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC-CCCEEEEeC-CCcEEEEeccCc
Q 003217 266 IWPWEAIEKALS-LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTR 342 (838)
Q Consensus 266 vWd~~~~~~~~~-~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~V~s~s-~~tI~lWD~~tg 342 (838)
+|++.+...... ... .. .+.+| ...+.+++..+ .+..+++++ ++.|++||++++
T Consensus 208 vwd~~~~~~~~~~~~~----~~---------~~~~h----------~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 208 LWDINATPKEHRVIDA----KN---------IFTGH----------TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN 264 (430)
T ss_dssp EEETTSCCBGGGEEEC----SE---------EECCC----------SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred EEeCCCCCCCCceecc----ce---------eecCC----------CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 999976321100 000 00 01111 44678888877 556776765 689999999865
Q ss_pred c---EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCC
Q 003217 343 E---LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (838)
Q Consensus 343 ~---~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (838)
. .+.. +..|.
T Consensus 265 ~~~~~~~~-------------------------------------------------------------------~~~~~ 277 (430)
T 2xyi_A 265 NTSKPSHT-------------------------------------------------------------------VDAHT 277 (430)
T ss_dssp CSSSCSEE-------------------------------------------------------------------EECCS
T ss_pred CCCcceeE-------------------------------------------------------------------eecCC
Confidence 3 1110 11233
Q ss_pred CceEEEEEcCCCc--EEEEECCCeEEEEcC-C-CCeeeEeecCCccEEEEEE--cCC-EEEEEeeCCeEEEEeCCC----
Q 003217 420 RRTEALTTSIDGM--IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLEG---- 488 (838)
Q Consensus 420 ~~v~ala~S~dg~--l~Sgs~DgtIrlWD~-~-g~~l~tl~~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~g---- 488 (838)
..|.+++++|++. +++|+.||+|++||+ + ++++.++.+|...|.++++ +++ .|++|+.|++|+|||+..
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 4567888999875 789999999999999 4 5788999999999999976 564 799999999999999863
Q ss_pred -----------cccccccccccCEEEEEe--CCC-EEEEEcCCCCeeeeecC
Q 003217 489 -----------NLLGGWVAHSSPVIKMAV--GAG-YIFTLANHGGIRGWNVT 526 (838)
Q Consensus 489 -----------~~i~~l~gH~~~V~sla~--dg~-~l~S~S~DgtIrlWdl~ 526 (838)
+++..+.+|.+.|.++++ ++. .++|++.|++|++|++.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred cCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 567788899999999986 455 89999999999999975
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-22 Score=215.42 Aligned_cols=267 Identities=12% Similarity=0.076 Sum_probs=175.5
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC--CCCEEEE
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~--dg~~LaS 208 (838)
.+.+++.+ +..|++ +.|+.|++||+.+...... .......| ..+|.|++|+| ++++|++
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~-~~~v~~~~~~~~~d~~~l~s 76 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAH-DSSIVAIDWASPEYGRIIAS 76 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECC-SSCEEEEEECCGGGCSEEEE
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcce---------------ecceeccC-CCcEEEEEEcCCCCCCEEEE
Confidence 46666654 445665 5589999999975321100 00001123 78999999999 6999999
Q ss_pred EeCCCcEEEEECCCCccC-CCCCcceeEEeccccccEEEEEEecC--CC-EEEeeCCCcEEEEECCCcceeeecCCCcee
Q 003217 209 GHRDGRIMCWKMNARLLD-SDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~-~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~ 284 (838)
|+.||+|++||+.++... .....+....+.+|.+.|++++|+|+ +. |++|+.|++|++||+.+.+....+.....
T Consensus 77 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~- 155 (351)
T 3f3f_A 77 ASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE- 155 (351)
T ss_dssp EETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE-
T ss_pred EcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccc-
Confidence 999999999999875210 00112346678899999999999999 87 78999999999999977543211110000
Q ss_pred eeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC---CCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeec
Q 003217 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS---RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM 360 (838)
Q Consensus 285 ~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~---~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (838)
.. ...+ ........+.++...+. +..+++++ ++.+.+|+..+++.....
T Consensus 156 ~~-------~~~~--------~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------ 208 (351)
T 3f3f_A 156 MK-------VLSI--------PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAA------------ 208 (351)
T ss_dssp EE-------SCSC--------CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEE------------
T ss_pred cc-------cccc--------ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeee------------
Confidence 00 0000 00011345677777765 66666666 456666665554431110
Q ss_pred ccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC-----cEEE
Q 003217 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-----MIWT 435 (838)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg-----~l~S 435 (838)
.+..|...|.+++++|++ .|++
T Consensus 209 -----------------------------------------------------~~~~h~~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 209 -----------------------------------------------------KLPGHKSLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp -----------------------------------------------------ECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred -----------------------------------------------------ecCCCCcceeEEEECCCCCCcceEEEE
Confidence 012344456677777876 3778
Q ss_pred EECCCeEEEEcC-CC----------------------------------------------CeeeEeecCCccEEEEEE-
Q 003217 436 GGANGLLLQWDP-NG----------------------------------------------NRLQDFQYLPFAVQCLCT- 467 (838)
Q Consensus 436 gs~DgtIrlWD~-~g----------------------------------------------~~l~tl~~H~~~V~sls~- 467 (838)
|+.||+|++||+ ++ +++.++.+|...|+++++
T Consensus 236 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 315 (351)
T 3f3f_A 236 GCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN 315 (351)
T ss_dssp EETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEEC
T ss_pred EcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEc
Confidence 888888888887 33 677888899999999976
Q ss_pred -cCCEEEEEeeCCeEEEEeCC-Cc---cccccccc
Q 003217 468 -FGSQIWVGYMNGIVQVLDLE-GN---LLGGWVAH 497 (838)
Q Consensus 468 -dG~~LasGs~DgtIrlWD~~-g~---~i~~l~gH 497 (838)
+|++|++|+.||+|+|||++ ++ ++..+..|
T Consensus 316 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~ 350 (351)
T 3f3f_A 316 LTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ 350 (351)
T ss_dssp SSSCCEEEEETTSCEEEEEECTTSCEEEEEEEC--
T ss_pred CCCCEEEEecCCCcEEEEecCcCcchhheeehccc
Confidence 68899999999999999987 43 34444444
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-23 Score=227.90 Aligned_cols=280 Identities=13% Similarity=0.055 Sum_probs=177.7
Q ss_pred CCEEEEe-cCCCEEEEeCCCC--ccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003217 142 EEQLWAG-GENGLRVWNLKEL--YDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCW 218 (838)
Q Consensus 142 ~~~l~~g-~d~~vrvWd~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvW 218 (838)
++.|.++ .|+.|+|||+.+. .... .+. .| ..+|.|++|+|++++|++|+.||+|++|
T Consensus 23 g~~l~~~~~d~~i~iw~~~~~~~~~~~-----------------~~~--~h-~~~v~~~~~s~~~~~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 23 RTEFVTTTATNQVELYEQDGNGWKHAR-----------------TFS--DH-DKIVTCVDWAPKSNRIVTCSQDRNAYVY 82 (377)
T ss_dssp SSEEECCCSSSCBCEEEEETTEEEECC-----------------CBC--CC-SSCEEEEEECTTTCCEEEEETTSSEEEC
T ss_pred CCEEEEecCCCEEEEEEccCCceEEEE-----------------EEe--cC-CceEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 4456554 6999999999754 2111 121 23 7799999999999999999999999999
Q ss_pred ECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeec
Q 003217 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (838)
Q Consensus 219 d~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 297 (838)
|+.++. .......+.+|...|++++|+|+|+ |++|+.|++|++||+.+...... .. .+
T Consensus 83 d~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-------~~---------~~ 141 (377)
T 3dwl_C 83 EKRPDG-----TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV-------SK---------HL 141 (377)
T ss_dssp -----------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC-------CE---------EE
T ss_pred EcCCCC-----ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee-------ee---------Ee
Confidence 998851 1235677889999999999999997 89999999999999976431000 00 00
Q ss_pred ccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEE
Q 003217 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (838)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (838)
.. .+...+.++++++++..+++++ +++|++||+.+++....... ....... ... ..
T Consensus 142 ~~---------~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------~~~~~~~---~~~-~~ 198 (377)
T 3dwl_C 142 KR---------PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEA----------SVWGSRL---PFN-TV 198 (377)
T ss_dssp CS---------SCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCS----------CSSCSCC---CEE-EE
T ss_pred ec---------ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccc----------ccccccc---chh-hh
Confidence 11 0145688899988888888876 67899999975542111000 0000000 000 00
Q ss_pred EecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC--------ccccCCCceEEEEEcCCCc-EEEEECCCeEEEE
Q 003217 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG--------GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQW 445 (838)
Q Consensus 377 ~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g--------~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlW 445 (838)
.........+..+.|.+++..++++..++..+++. .+ .+..|...|.+++++|+|. |++|+.|+ +.+|
T Consensus 199 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~ 277 (377)
T 3dwl_C 199 CAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS-PILL 277 (377)
T ss_dssp EECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSS-EEEE
T ss_pred hhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc-EEEE
Confidence 00001233344567777777778888888777765 12 2345777899999999998 45665555 5577
Q ss_pred cCC--C-Ceee----------------------------------Ee----------------ecCCccEEEEEE---cC
Q 003217 446 DPN--G-NRLQ----------------------------------DF----------------QYLPFAVQCLCT---FG 469 (838)
Q Consensus 446 D~~--g-~~l~----------------------------------tl----------------~~H~~~V~sls~---dG 469 (838)
+.. + +... .| ..|.+.|+++.+ ++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~ 357 (377)
T 3dwl_C 278 QGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTP 357 (377)
T ss_dssp CCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEET
T ss_pred EeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCC
Confidence 662 2 1111 11 129999999964 23
Q ss_pred C---EEEEEeeCCeEEEEeC
Q 003217 470 S---QIWVGYMNGIVQVLDL 486 (838)
Q Consensus 470 ~---~LasGs~DgtIrlWD~ 486 (838)
. +|++|+.||+|+|||+
T Consensus 358 ~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 358 GNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp TEEEEEEEEETTSEEEEECC
T ss_pred CceEEEEeecCCCcEEEecC
Confidence 3 7999999999999985
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-22 Score=224.25 Aligned_cols=261 Identities=8% Similarity=0.004 Sum_probs=178.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd 268 (838)
.++|.|++|+|||++|++|+.|| +++|+++++ +.... .+...+..+++.+++. + ++|+.|++|+|||
T Consensus 19 ~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 19 SNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV--------AHIMS--QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE--------EEEEE--EECSCCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCE-EEEEecCCc--------ceeee--eecCCeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 77999999999999999999886 789998875 33333 2233577888888877 4 5788999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCc-cEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTR-ELLKV 347 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg-~~l~~ 347 (838)
+.+++....+. ....+..+...+ ..++.+.++.|++||+.++ +.+.+
T Consensus 88 ~~~~~~~~~~~------------------------------~~~~v~~v~~~~--~~~~~~~~~~i~i~d~~~~~~~~~~ 135 (355)
T 3vu4_A 88 DVKKQDVSRIK------------------------------VDAPVKDLFLSR--EFIVVSYGDVISVFKFGNPWKRITD 135 (355)
T ss_dssp TTTTEEEEEEE------------------------------CSSCEEEEEECS--SEEEEEETTEEEEEESSTTCCBSSC
T ss_pred CCCCcEEEEEE------------------------------CCCceEEEEEcC--CEEEEEEcCEEEEEECCCCceeeEE
Confidence 97754332221 023466666654 3445556789999999987 55444
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceee-ecCCcEEEEec---------------
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM-GAADAVRRVAA--------------- 411 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~-g~~~~v~~v~~--------------- 411 (838)
+.. ......+++ ...++. |..++..+++.
T Consensus 136 ~~~---~~~~~~~s~--------------------------------~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~ 180 (355)
T 3vu4_A 136 DIR---FGGVCEFSN--------------------------------GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQ 180 (355)
T ss_dssp CEE---EEEEEEEET--------------------------------TEEEEEESSCTTCEEEEECCC------------
T ss_pred ecc---CCceEEEEc--------------------------------cEEEEeCCCcCcEEEEEECCCCCcccccccccc
Confidence 432 000111111 000111 22222222222
Q ss_pred -------cCccccCCCceEEEEEcCCCc-EEEEECCCe-EEEEcC-CCCeeeEee-c-CCccEEEEEE--cCCEEEEEee
Q 003217 412 -------KGGFGDDNRRTEALTTSIDGM-IWTGGANGL-LLQWDP-NGNRLQDFQ-Y-LPFAVQCLCT--FGSQIWVGYM 477 (838)
Q Consensus 412 -------~g~~~~~~~~v~ala~S~dg~-l~Sgs~Dgt-IrlWD~-~g~~l~tl~-~-H~~~V~sls~--dG~~LasGs~ 477 (838)
...+..|...|.+++++|||. |++|+.|++ |++||+ +++++.++. + |...|+++++ +|++|++|+.
T Consensus 181 ~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~ 260 (355)
T 3vu4_A 181 QKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD 260 (355)
T ss_dssp ------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET
T ss_pred ccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC
Confidence 112456888999999999997 799999998 999999 799999998 6 9999999876 6899999999
Q ss_pred CCeEEEEeCC-Cc--ccccccc---------------------ccc--CEEEEEeCCCEEEEEcCCCCeeeeecCCCC
Q 003217 478 NGIVQVLDLE-GN--LLGGWVA---------------------HSS--PVIKMAVGAGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 478 DgtIrlWD~~-g~--~i~~l~g---------------------H~~--~V~sla~dg~~l~S~S~DgtIrlWdl~s~~ 529 (838)
|++|+|||++ +. ....+.+ +.. .+.+...|++.+++++.||.+++|++....
T Consensus 261 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 261 KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred CCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 9999999986 21 1111111 111 232333578899999999999999986533
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-23 Score=234.49 Aligned_cols=285 Identities=12% Similarity=0.082 Sum_probs=186.1
Q ss_pred cCcccccCCCcccccCcccccCCCC--CCCceeecCCCCCccccCceeEEEEec---CCEEEE-ecCCCEEEEeCCCCcc
Q 003217 90 LPEYIGKGGDIPMFKPPVRAALHPA--RPPSLEVKPHPLRETQIGCFLRTIVCT---EEQLWA-GGENGLRVWNLKELYD 163 (838)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~l~~-g~d~~vrvWd~~~~~~ 163 (838)
.+..|+.|+.+|. |+-|-... .+..+.+..| ...+.+|+.. +..|++ +.|++||+||+++...
T Consensus 131 ~~~~lasGs~dg~----i~lWd~~~~~~~~~~~~~gH-------~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~ 199 (435)
T 4e54_B 131 HPSTVAVGSKGGD----IMLWNFGIKDKPTFIKGIGA-------GGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL 199 (435)
T ss_dssp CTTCEEEEETTSC----EEEECSSCCSCCEEECCCSS-------SCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred CCCEEEEEeCCCE----EEEEECCCCCceeEEEccCC-------CCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence 5667777777665 33332211 1122222233 1345666654 346766 4699999999965321
Q ss_pred ccccccccccCCCCCCCCCCcee-eecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccc
Q 003217 164 ESESDSVSVSKSKGEDGTAPFKE-SVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG 242 (838)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~p~~~-~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~ 242 (838)
.. +.. ... ...+.|++|+|++++|++|+.||+|++||+.+ +++..+.+|.+
T Consensus 200 ~~------------------~~~~~~~-~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~---------~~~~~~~~h~~ 251 (435)
T 4e54_B 200 RV------------------FASSDTI-NIWFCSLDVSASSRMVVTGDNVGNVILLNMDG---------KELWNLRMHKK 251 (435)
T ss_dssp EE------------------EECCSSC-SCCCCCEEEETTTTEEEEECSSSBEEEEESSS---------CBCCCSBCCSS
T ss_pred eE------------------EeccCCC-CccEEEEEECCCCCEEEEEeCCCcEeeeccCc---------ceeEEEecccc
Confidence 10 100 011 45688999999999999999999999999976 45677899999
Q ss_pred cEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEc
Q 003217 243 PVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD 320 (838)
Q Consensus 243 ~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~ 320 (838)
.|++|+|+|++. |++|+.|++|+|||+.+......+.. ..+| ...|.+++++
T Consensus 252 ~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~----------------~~~h----------~~~v~~~~~s 305 (435)
T 4e54_B 252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY----------------SLPH----------RHPVNAACFS 305 (435)
T ss_dssp CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB----------------CCBC----------SSCEEECCBC
T ss_pred eEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE----------------eeec----------cccccceeEC
Confidence 999999999986 67999999999999976432211110 0111 4467788888
Q ss_pred CCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCccee
Q 003217 321 HSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAI 399 (838)
Q Consensus 321 ~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~ 399 (838)
+++..|++++ |++|+|||+.++++...+..+..... .. .... ...+.
T Consensus 306 pdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~----~~--------------------~~~~-~~~~~------- 353 (435)
T 4e54_B 306 PDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF----QH--------------------LTPI-KAAWH------- 353 (435)
T ss_dssp TTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCC----SS--------------------SCCC-BCEEC-------
T ss_pred CCCCeeEEEcCCCEEEEEECCCCccceEEeccccccc----cc--------------------ceeE-EEEEc-------
Confidence 8888888877 68999999999988776654432100 00 0000 00011
Q ss_pred eecCCcEEEEeccCccccCCCceEEEEEcCCCc--EEEEECCCeEEEEcC-CCCeeeEee-cCCccEEEE---EEcCCEE
Q 003217 400 MGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDP-NGNRLQDFQ-YLPFAVQCL---CTFGSQI 472 (838)
Q Consensus 400 ~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~--l~Sgs~DgtIrlWD~-~g~~l~tl~-~H~~~V~sl---s~dG~~L 472 (838)
....+..+.+++++. ++++..+++|++||. +|+++.++. +|...|.++ +++|++|
T Consensus 354 ------------------~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~l 415 (435)
T 4e54_B 354 ------------------PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTL 415 (435)
T ss_dssp ------------------SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCE
T ss_pred ------------------CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEE
Confidence 111122344556655 345556678999999 789888765 688888776 3478999
Q ss_pred EEEeeCCeEEEEeCC-Ccc
Q 003217 473 WVGYMNGIVQVLDLE-GNL 490 (838)
Q Consensus 473 asGs~DgtIrlWD~~-g~~ 490 (838)
++|+ |++|+|||++ |+.
T Consensus 416 asg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 416 ASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEEC-SSEEEECCCC----
T ss_pred EEEc-CCcEEEEECCcCee
Confidence 9876 8899999987 554
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=225.77 Aligned_cols=246 Identities=17% Similarity=0.138 Sum_probs=179.7
Q ss_pred eEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEec-CCC-EEEeeCCCcEEEEECC
Q 003217 194 VMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIWPWE 270 (838)
Q Consensus 194 V~~la~s~dg~-~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~SgS~DgtIrvWd~~ 270 (838)
..+++++|+.. ++++|+.||.|++|++.... ........+.+|.++|++++|+| ++. |++|+.||+|+||++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~----~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTG----RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCE----ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCC----CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence 44578888764 45578999999999986531 11123446789999999999999 777 7899999999999997
Q ss_pred CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCC-CEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
+......... ... .+.+| ...+.++++.+++ ..+++++ +++|++||+.+++++.++
T Consensus 113 ~~~~~~~~~~---~~~---------~~~~h----------~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 170 (402)
T 2aq5_A 113 DGGLVLPLRE---PVI---------TLEGH----------TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170 (402)
T ss_dssp TTCCSSCBCS---CSE---------EEECC----------SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCCccccCC---ceE---------EecCC----------CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEE
Confidence 6432110000 000 11122 4568888988886 5777776 678999999998775544
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
.. ..|...|.+++++
T Consensus 171 ~~-----------------------------------------------------------------~~~~~~v~~~~~~ 185 (402)
T 2aq5_A 171 GP-----------------------------------------------------------------DVHPDTIYSVDWS 185 (402)
T ss_dssp CT-----------------------------------------------------------------TTCCSCEEEEEEC
T ss_pred ec-----------------------------------------------------------------CCCCCceEEEEEC
Confidence 10 1123345678899
Q ss_pred CCCc-EEEEECCCeEEEEcC-CCCeeeEe-ecCCcc-EEEEEE--cCCEEEEE---eeCCeEEEEeCC-Ccc-ccccc-c
Q 003217 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDF-QYLPFA-VQCLCT--FGSQIWVG---YMNGIVQVLDLE-GNL-LGGWV-A 496 (838)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl-~~H~~~-V~sls~--dG~~LasG---s~DgtIrlWD~~-g~~-i~~l~-g 496 (838)
|++. |++|+.|++|++||+ +++++.++ .+|... +.++.+ +|++|++| +.|+.|++||+. ++. +.... .
T Consensus 186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~ 265 (402)
T 2aq5_A 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD 265 (402)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC
T ss_pred CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc
Confidence 9886 899999999999999 78888888 788775 676654 68899998 789999999987 333 33333 5
Q ss_pred cccCEEEEEe--CCCEEE-EEcCCCCeeeeecCCCCC
Q 003217 497 HSSPVIKMAV--GAGYIF-TLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 497 H~~~V~sla~--dg~~l~-S~S~DgtIrlWdl~s~~~ 530 (838)
|...|.++++ ++++++ +++.|++|++|++....+
T Consensus 266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 7778888874 677886 667899999999987654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-21 Score=214.99 Aligned_cols=251 Identities=9% Similarity=0.071 Sum_probs=186.1
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCccC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV-WSGHRDGRIMCWKMNARLLD 226 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~L-aSGs~DGtIrvWd~~~g~~~ 226 (838)
+.|+.|++||+.+...... +.+...+.|++|+|+|+.| ++++.|++|++||+.++
T Consensus 9 ~~d~~v~v~d~~~~~~~~~---------------------~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~--- 64 (391)
T 1l0q_A 9 SESDNISVIDVTSNKVTAT---------------------IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--- 64 (391)
T ss_dssp TTTTEEEEEETTTTEEEEE---------------------EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---
T ss_pred CCCCEEEEEECCCCeEEEE---------------------eecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC---
Confidence 4589999999976543211 1123468999999999876 78889999999999887
Q ss_pred CCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceecc
Q 003217 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (838)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 304 (838)
+....+..|. .|.+++|+|+|+ | ++++.|++|++||+.+++....+..
T Consensus 65 -----~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~------------------------ 114 (391)
T 1l0q_A 65 -----NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT------------------------ 114 (391)
T ss_dssp -----EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------------------------
T ss_pred -----eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC------------------------
Confidence 5566666555 999999999998 5 4677889999999976543211110
Q ss_pred ceeeeecCCeEEEEEcCCCCEE-EEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCC
Q 003217 305 GFSSILTSDIKNLLSDHSRAKV-WSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (838)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~V-~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~ 382 (838)
...+..++.++++..+ ++++ ++.|++||+.+++++..+..+.
T Consensus 115 ------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~------------------------------ 158 (391)
T 1l0q_A 115 ------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR------------------------------ 158 (391)
T ss_dssp ------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS------------------------------
T ss_pred ------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC------------------------------
Confidence 2245677788888766 4555 5789999999988765543211
Q ss_pred CcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-E-EEEECCCeEEEEcC-CCCeeeEeecCC
Q 003217 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-I-WTGGANGLLLQWDP-NGNRLQDFQYLP 459 (838)
Q Consensus 383 ~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l-~Sgs~DgtIrlWD~-~g~~l~tl~~H~ 459 (838)
.+..++++|+|. + ++++.|++|++||+ +++++..+. |.
T Consensus 159 --------------------------------------~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~ 199 (391)
T 1l0q_A 159 --------------------------------------SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VE 199 (391)
T ss_dssp --------------------------------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CS
T ss_pred --------------------------------------CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cC
Confidence 123567888886 5 56778899999999 677777665 45
Q ss_pred ccEEEEEE--cCCEEEEEe---eCCeEEEEeCC-CcccccccccccCEEEEE--eCCCEE-EEEcCCCCeeeeecCCC
Q 003217 460 FAVQCLCT--FGSQIWVGY---MNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYI-FTLANHGGIRGWNVTSP 528 (838)
Q Consensus 460 ~~V~sls~--dG~~LasGs---~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l-~S~S~DgtIrlWdl~s~ 528 (838)
..+.++++ +|++|++++ .++.|++||++ ++++..+..|.. +.+++ ++++++ ++++.|++|++||+.+.
T Consensus 200 ~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 57777765 688999988 58999999987 677788877764 67776 467777 68899999999998764
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.7e-22 Score=213.48 Aligned_cols=263 Identities=11% Similarity=0.117 Sum_probs=184.9
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCC-EEEEE
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG-VVWSG 209 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~-~LaSG 209 (838)
.+.+++.. +..|++ +.|+.|++||+.+...... +.....+ ..+|.|++|+|+++ +|++|
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~-~~~v~~~~~~~~~~~~l~~~ 75 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRY-KHPLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE----------------EEEEEEC-SSCEEEEEEEESSSEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc----------------ceeeeec-CCceEEEEECCCCCcEEEEE
Confidence 35555543 556666 5689999999865431100 0111123 77999999999999 99999
Q ss_pred eCCCcEEEEEC-CCCccCCCCCcceeEEecc--ccccEEEEEEecCCC-EEEeeCCCcEEEEECCC---------cceee
Q 003217 210 HRDGRIMCWKM-NARLLDSDDGFGEVLSWQA--HRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA---------IEKAL 276 (838)
Q Consensus 210 s~DGtIrvWd~-~~g~~~~~~~~~~~~~l~g--H~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~---------~~~~~ 276 (838)
+.||+|++||+ .++ ....+.+ |...|++++|+| +. |++|+.|++|++||+.+ .+...
T Consensus 76 ~~dg~i~~wd~~~~~---------~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 76 TVQGEILKVDLIGSP---------SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp ETTSCEEEECSSSSS---------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred cCCCeEEEEEeccCC---------ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 99999999999 875 3477888 999999999999 76 78999999999999864 21111
Q ss_pred ecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccC-ccEE--EEEecCCc
Q 003217 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDART-RELL--KVFNIDGQ 353 (838)
Q Consensus 277 ~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~t-g~~l--~~l~~~~~ 353 (838)
.+. ....+.+++..+++ .+.++.++.|++||+++ +... .....+..
T Consensus 146 ~~~------------------------------~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 194 (342)
T 1yfq_A 146 NTK------------------------------VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY 194 (342)
T ss_dssp SSS------------------------------SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSS
T ss_pred EEe------------------------------eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCC
Confidence 000 13456777776655 34344467999999988 5431 11111111
Q ss_pred eEEeeecccCcccccccceeeEEEecCCCCcceeeeeEee-cCcceeeecCCcEEEEec--cC----------ccccC--
Q 003217 354 IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAADAVRRVAA--KG----------GFGDD-- 418 (838)
Q Consensus 354 ~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~-~~~~~~~g~~~~v~~v~~--~g----------~~~~~-- 418 (838)
....+.+.+ .+...+++..++..+++. .. .+..+
T Consensus 195 -------------------------------~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
T 1yfq_A 195 -------------------------------QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243 (342)
T ss_dssp -------------------------------CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred -------------------------------ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccc
Confidence 112334444 444555566666555533 11 12223
Q ss_pred -------CCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecC-CccEEEEEEcCCEEEEEeeCCe-EEEEe
Q 003217 419 -------NRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL-PFAVQCLCTFGSQIWVGYMNGI-VQVLD 485 (838)
Q Consensus 419 -------~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H-~~~V~sls~dG~~LasGs~Dgt-IrlWD 485 (838)
...|.+++++|++. |++|+.||+|++||+ +++++.++.+| ..+|++++++|++|++|+.||+ .+.|.
T Consensus 244 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred cccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCccccccc
Confidence 33899999999987 899999999999999 68999999998 9999999988999999999998 65555
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-22 Score=228.47 Aligned_cols=238 Identities=10% Similarity=0.028 Sum_probs=178.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec---------------------------------
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--------------------------------- 238 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~--------------------------------- 238 (838)
.|+.|++|+++|++|+++ .++.|++||+.++. ..+.+..|.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPN-----HWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKS 78 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTT-----EEEEEEEEECCC------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCC-----cceeeeecCCccccccccccccchhhcccccccccccccccc
Confidence 389999999999977665 57899999998872 000233333
Q ss_pred ---------------------cccccEEEEEEecCCC-E-EEeeCCCcEEEEECC--CcceeeecCCCceeeeEEEEeec
Q 003217 239 ---------------------AHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWE--AIEKALSLKPEERHTAALIVERS 293 (838)
Q Consensus 239 ---------------------gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~--~~~~~~~~~~~~~~~~~~~~~~s 293 (838)
+|.+.|++++|+|+|+ | ++|+.|++|+|||+. ++.....+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-------------- 144 (450)
T 2vdu_B 79 NKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-------------- 144 (450)
T ss_dssp ---------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE--------------
T ss_pred CcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee--------------
Confidence 4556899999999998 5 799999999999997 433221110
Q ss_pred eeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccce
Q 003217 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (838)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (838)
.+ .....+.++++++++..|++++ ++.|++||+.+++....
T Consensus 145 -----~~--------~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~------------------------- 186 (450)
T 2vdu_B 145 -----RF--------CFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF------------------------- 186 (450)
T ss_dssp -----EE--------ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC-------------------------
T ss_pred -----cc--------cCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc-------------------------
Confidence 00 0134577888988888888877 47899999876543100
Q ss_pred eeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCC---Cc-EEEEECCCeEEEEcC-
Q 003217 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID---GM-IWTGGANGLLLQWDP- 447 (838)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~d---g~-l~Sgs~DgtIrlWD~- 447 (838)
.. ..+..|...|.+++++|+ +. |++|+.|++|++||+
T Consensus 187 ------~~--------------------------------~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~ 228 (450)
T 2vdu_B 187 ------TQ--------------------------------EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP 228 (450)
T ss_dssp ------CC--------------------------------CCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES
T ss_pred ------cc--------------------------------eeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC
Confidence 00 012234456778899998 85 899999999999999
Q ss_pred CCCeeeE-eecCCccEEEEEE-cCCEEEEEeeCCeEEEEeCC-Cccccccccc-------------------------cc
Q 003217 448 NGNRLQD-FQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH-------------------------SS 499 (838)
Q Consensus 448 ~g~~l~t-l~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH-------------------------~~ 499 (838)
+++++.. +.+|...|+++++ +|++|++|+.|++|+|||+. ++++..+..| ..
T Consensus 229 ~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (450)
T 2vdu_B 229 QCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF 308 (450)
T ss_dssp CTTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred CCceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceE
Confidence 6888887 5689999999877 68899999999999999987 6776666533 35
Q ss_pred CEEEEEe--CCCEEEEEc-CCCCeeeeec
Q 003217 500 PVIKMAV--GAGYIFTLA-NHGGIRGWNV 525 (838)
Q Consensus 500 ~V~sla~--dg~~l~S~S-~DgtIrlWdl 525 (838)
.|.+|++ +++++++++ .|++|++|++
T Consensus 309 ~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 309 AVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 6888874 688999888 8999999998
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-21 Score=212.01 Aligned_cols=265 Identities=11% Similarity=0.133 Sum_probs=178.7
Q ss_pred ceeEEEEecC-----CEEEE-ecCCCEEEEeCCC-CccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCE
Q 003217 133 CFLRTIVCTE-----EQLWA-GGENGLRVWNLKE-LYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGV 205 (838)
Q Consensus 133 ~~~~~l~~~~-----~~l~~-g~d~~vrvWd~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~ 205 (838)
..+.+++.+. ..|++ +.|+.|++||+.+ ..... .....| ..+|.+++|+|++++
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~------------------~~~~~h-~~~v~~~~~~~~~~~ 100 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP------------------KAQQMH-TGPVLDVCWSDDGSK 100 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE------------------EEEEEC-SSCEEEEEECTTSSE
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE------------------EEeccc-cCCEEEEEECcCCCE
Confidence 3566777654 34555 4589999999975 22110 011233 789999999999999
Q ss_pred EEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEE--ecCCC-EEEeeCCCcEEEEECCCcceeeecCCCc
Q 003217 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI--SSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (838)
Q Consensus 206 LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slaf--s~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~ 282 (838)
|++|+.||+|++||+.++ ....+.+|..+|++++| ++++. |++|+.|++|++||+.+.+....+..
T Consensus 101 l~s~~~dg~v~iwd~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-- 169 (368)
T 3mmy_A 101 VFTASCDKTAKMWDLSSN---------QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL-- 169 (368)
T ss_dssp EEEEETTSEEEEEETTTT---------EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC--
T ss_pred EEEEcCCCcEEEEEcCCC---------CceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec--
Confidence 999999999999999985 34457889999999999 88887 78999999999999976543222211
Q ss_pred eeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeeccc
Q 003217 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSL 362 (838)
Q Consensus 283 ~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~ 362 (838)
...+.++.... ...+.++.++.+++||+.+............
T Consensus 170 ----------------------------~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--------- 211 (368)
T 3mmy_A 170 ----------------------------PERCYCADVIY-PMAVVATAERGLIVYQLENQPSEFRRIESPL--------- 211 (368)
T ss_dssp ----------------------------SSCEEEEEEET-TEEEEEEGGGCEEEEECSSSCEEEEECCCSC---------
T ss_pred ----------------------------CCCceEEEecC-CeeEEEeCCCcEEEEEeccccchhhhccccc---------
Confidence 11222233322 2334444567899999987654222110000
Q ss_pred CcccccccceeeEEEecCCCCcceeeeeEeecCc----ceeeecCCcEEEEeccC---------ccccCCC---------
Q 003217 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR----NAIMGAADAVRRVAAKG---------GFGDDNR--------- 420 (838)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~----~~~~g~~~~v~~v~~~g---------~~~~~~~--------- 420 (838)
......+.+..... ..+++..++..+++... .+..|..
T Consensus 212 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (368)
T 3mmy_A 212 --------------------KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQ 271 (368)
T ss_dssp --------------------SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCE
T ss_pred --------------------cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccc
Confidence 00000111111111 14556666665555411 1222322
Q ss_pred ---ceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEe
Q 003217 421 ---RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 421 ---~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (838)
.|.+++++|++. |++|+.||+|++||+ ++++++++.+|..+|+++++ +|++|++|+.|+..+.|+
T Consensus 272 ~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 272 DIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp EECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred cccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence 699999999986 899999999999999 78999999999999999876 788999999987655554
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-23 Score=230.01 Aligned_cols=262 Identities=15% Similarity=0.077 Sum_probs=153.8
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC--------CCCEEEEEeCCCcEEEEE
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--------ASGVVWSGHRDGRIMCWK 219 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~--------dg~~LaSGs~DGtIrvWd 219 (838)
+.|++||+||+.+...... .....+ ..| .+.|.+|+|+| |+++||||+.|++||+||
T Consensus 108 ~~d~~v~lw~~~~~~~~~~------------~~~~~~--~gH-~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 108 CQDNTVRLIITKNETIITQ------------HVLGGK--SGH-HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp ETTSCEEEEEEETTEEEEE------------EEECTT--TSC-SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred eCCCcEEEEECCCCcccee------------eeeccc--CCC-CCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 5699999999875432210 000111 134 88999999998 889999999999999999
Q ss_pred CCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCcceeeecCCCceee--eEEEEeecee
Q 003217 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHT--AALIVERSYI 295 (838)
Q Consensus 220 ~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~--~~~~~~~s~~ 295 (838)
+.++ .+...+.+|..+|.+++|+|++. |++|+.|++||+||+.++............. ..+......
T Consensus 173 ~~~~--------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~- 243 (393)
T 4gq1_A 173 LTDE--------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP- 243 (393)
T ss_dssp EETT--------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG-
T ss_pred CCCC--------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc-
Confidence 9876 56777889999999999999874 7899999999999998754332221110000 000000000
Q ss_pred ecccceeccceeeeecCCeEEEEE-cCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccccccccee
Q 003217 296 DLRSHLSVNGFSSILTSDIKNLLS-DHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (838)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las-~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (838)
+ . .......+...+..+.. .+++..|++++ ++++++||+.+++....+..+........+.+
T Consensus 244 -~---~-~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~----------- 307 (393)
T 4gq1_A 244 -L---V-NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLP----------- 307 (393)
T ss_dssp -G---C-------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSC-----------
T ss_pred -c---e-eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcc-----------
Confidence 0 0 00000011234555554 36777888877 67999999998877665543322111100000
Q ss_pred eEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc-CCCc-EEEEECCCeEEEEcC-CCC
Q 003217 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS-IDGM-IWTGGANGLLLQWDP-NGN 450 (838)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S-~dg~-l~Sgs~DgtIrlWD~-~g~ 450 (838)
... . .......+..+.+. .++. +++|+.||+|++||+ +++
T Consensus 308 --------------------~~~-----------~------~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 308 --------------------NVQ-----------G------ISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD 350 (393)
T ss_dssp --------------------SEE-----------E------ECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT
T ss_pred --------------------ccc-----------c------ccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc
Confidence 000 0 00000111112222 2444 567888999999999 789
Q ss_pred eeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 451 RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 451 ~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
++..+.+|..+|.+|++ ||++||+++.+ .|.||.+.
T Consensus 351 ~~~~~~~~~~~V~svafspdG~~LA~as~~-Gv~lvrL~ 388 (393)
T 4gq1_A 351 SNSIPIQLGMPIVDFCWHQDGSHLAIATEG-SVLLTRLM 388 (393)
T ss_dssp CCEEEEECSSCEEEEEECTTSSEEEEEESS-EEEEEEEG
T ss_pred EEEEecCCCCcEEEEEEcCCCCEEEEEeCC-CeEEEEEe
Confidence 99999999999999875 79999998755 56677654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=221.93 Aligned_cols=229 Identities=8% Similarity=-0.020 Sum_probs=165.5
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCC
Q 003217 201 EASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 201 ~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
+++.+|+||+.||+|++||+.++ +....+. ...|.++.|+|+ ++|||.|++|++|+.......+....
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~--------~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDS--------KTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSS--------SCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred CCCCEEEEECCCCcEEEEECCCC--------cEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCC
Confidence 46789999999999999999987 4455554 567888999997 99999999999999865322222111
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC--CCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEe
Q 003217 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENR 357 (838)
Q Consensus 281 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~--~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~ 357 (838)
.. .... + ...+...+.++++.+ ++..+++++ +++|++||+++++++..+..+
T Consensus 114 ~~-~~~~------------~------~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------ 168 (343)
T 3lrv_A 114 NK-VLRE------------I------EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK------ 168 (343)
T ss_dssp CC-EEEE------------E------ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCC------
T ss_pred cc-eeEE------------e------ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC------
Confidence 10 0000 0 000134688888888 888888776 689999999998874433110
Q ss_pred eecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEE
Q 003217 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG 436 (838)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sg 436 (838)
+...+.+++++|||. +++|
T Consensus 169 ------------------------------------------------------------~~~~i~~~~~~pdg~~lasg 188 (343)
T 3lrv_A 169 ------------------------------------------------------------SDVEYSSGVLHKDSLLLALY 188 (343)
T ss_dssp ------------------------------------------------------------SSCCCCEEEECTTSCEEEEE
T ss_pred ------------------------------------------------------------CCCceEEEEECCCCCEEEEE
Confidence 111245788999987 6789
Q ss_pred ECCCeEEEEcC-CCCee-eEeec-CCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Cccccccc---ccccCEE--EEE
Q 003217 437 GANGLLLQWDP-NGNRL-QDFQY-LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWV---AHSSPVI--KMA 505 (838)
Q Consensus 437 s~DgtIrlWD~-~g~~l-~tl~~-H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~---gH~~~V~--sla 505 (838)
+.||+|++||+ +++++ .++.+ |..+|+++++ +|.+|++|+ |++|++||+. ++++..+. .|...+. +++
T Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (343)
T 3lrv_A 189 SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYD 267 (343)
T ss_dssp CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEE
T ss_pred cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEE
Confidence 99999999999 67777 88888 9999999976 688999999 5599999987 55544444 3555544 365
Q ss_pred --eCCCEEEEEcC-CCCeeeeecCC
Q 003217 506 --VGAGYIFTLAN-HGGIRGWNVTS 527 (838)
Q Consensus 506 --~dg~~l~S~S~-DgtIrlWdl~s 527 (838)
++++++++++. |+.|++|++..
T Consensus 268 ~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 268 IDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECT
T ss_pred ECCCCCEEEEecCCCCcEEEEEEcc
Confidence 47889999988 99999999854
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=214.15 Aligned_cols=240 Identities=11% Similarity=0.151 Sum_probs=171.2
Q ss_pred eeEEEEec--CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC--CCEEEE
Q 003217 134 FLRTIVCT--EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d--g~~LaS 208 (838)
.+.+++.+ +..|.++ .|+.|+|||+...... . ...+ ..| ..+|.|++|+++ +++|++
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~--------------~~~~--~~h-~~~v~~~~~~~~~~~~~l~s 74 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK-L--------------IDTL--TGH-EGPVWRVDWAHPKFGTILAS 74 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE-E--------------EEEE--CCC-SSCEEEEEECCGGGCSEEEE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce-e--------------eeEe--cCC-CCcEEEEEeCCCCCCCEEEE
Confidence 46666654 4466664 5899999998632110 0 0001 123 789999999987 999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC--CC-EEEeeCCCcEEEEECCCcceeeecCCCceee
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~ 285 (838)
|+.||+|++||+.++. ......+.+|...|++++|+|+ +. |++|+.|++|++||+.+........
T Consensus 75 ~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------ 142 (379)
T 3jrp_A 75 CSYDGKVLIWKEENGR------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII------ 142 (379)
T ss_dssp EETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE------
T ss_pred eccCCEEEEEEcCCCc------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE------
Confidence 9999999999998861 1256778899999999999999 77 7899999999999997642211000
Q ss_pred eEEEEeeceeecccceeccceeeeecCCeEEEEEcC-------------CCCEEEEeC-CCcEEEEeccCccEEEEEecC
Q 003217 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-------------SRAKVWSAG-FLSFALWDARTRELLKVFNID 351 (838)
Q Consensus 286 ~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-------------~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~ 351 (838)
+..+ ...+.+++..+ ++..+++++ ++.|++||++++.....+.
T Consensus 143 -----------~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-- 199 (379)
T 3jrp_A 143 -----------IDAH----------AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-- 199 (379)
T ss_dssp -----------EECC----------TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEE--
T ss_pred -----------ecCC----------CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE--
Confidence 0011 34566677666 467777776 6789999997654211100
Q ss_pred CceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCC-
Q 003217 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID- 430 (838)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~d- 430 (838)
. .+..|...|.+++++|+
T Consensus 200 --------------------------~-----------------------------------~~~~h~~~v~~~~~sp~~ 218 (379)
T 3jrp_A 200 --------------------------S-----------------------------------TLEGHSDWVRDVAWSPTV 218 (379)
T ss_dssp --------------------------E-----------------------------------EECCCSSCEEEEEECCCC
T ss_pred --------------------------E-----------------------------------EEecccCcEeEEEECCCC
Confidence 0 02234556778999998
Q ss_pred --Cc-EEEEECCCeEEEEcC-CCC---eeeEe--ecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 431 --GM-IWTGGANGLLLQWDP-NGN---RLQDF--QYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 431 --g~-l~Sgs~DgtIrlWD~-~g~---~l~tl--~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
+. |++++.||+|++||+ +++ ....+ ..|...|+++++ +|++|++|+.||.|++||+.
T Consensus 219 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 219 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 66 789999999999999 443 22222 348889998865 78899999999999999986
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=231.65 Aligned_cols=122 Identities=10% Similarity=0.060 Sum_probs=89.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccc-----cEEEEEEecCCC-EEEeeCCCcE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG-----PVLSLCISSYGD-LWSGSEGGGI 264 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~-----~V~slafs~dG~-L~SgS~DgtI 264 (838)
...|.+++|+|+|++||+++.||+|++||.++ +...+. |.. .|.+++|||||+ |++|+.||+|
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE----------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 56899999999999999999999999999533 445566 765 499999999998 8999999999
Q ss_pred EEEECCCcce-eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCcc
Q 003217 265 KIWPWEAIEK-ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRE 343 (838)
Q Consensus 265 rvWd~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~ 343 (838)
+|||+.++.. ..++ ..... ++.+ ..+ +...|.+++.++++ .++++.|++|++||+.+++
T Consensus 154 kIWd~~~~~l~~~~~----i~l~t---------i~~~--~~g----h~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 154 QFFSIRKNSENTPEF----YFESS---------IRLS--DAG----SKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp EEEECCCCTTTCCCC----EEEEE---------EECS--CTT----CCCCEEEEEEETTE-EEEEETTCCEEEECCCSSS
T ss_pred EEEECCCCccccccc----eeeee---------eecc--ccc----ccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCc
Confidence 9999976421 0000 00000 0000 000 13468889999888 6667778999999998766
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-21 Score=207.98 Aligned_cols=231 Identities=14% Similarity=0.174 Sum_probs=161.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeE--EeccccccEEEEEEecCCC-EEEeeCCCcEEEEECC
Q 003217 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVL--SWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (838)
Q Consensus 194 V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~--~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (838)
..||+||+++ +||+|. |++||+||+.++ +... .+.+|...|++|+|+|+|+ |+|||.|++|++|+++
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg--------~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~ 97 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSG--------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 97 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTC--------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCC--------CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC
Confidence 5689999875 787765 999999999997 4444 4467889999999999998 7899999999999998
Q ss_pred CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccE-EEEE
Q 003217 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL-LKVF 348 (838)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~-l~~l 348 (838)
+++....+.. | ...+.++.. .+..+++++ ++.+++|+..++.. +.++
T Consensus 98 ~~~~~~~~~~-------------------h----------~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~ 146 (318)
T 4ggc_A 98 QQKRLRNMTS-------------------H----------SARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATL 146 (318)
T ss_dssp TTEEEEEEEC-------------------C----------SSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred CceeEEEecC-------------------c----------cceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEE
Confidence 7654332221 1 112222222 345566665 46788888765432 1121
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
. .|...+..+.++
T Consensus 147 ~-------------------------------------------------------------------~~~~~~~~~~~~ 159 (318)
T 4ggc_A 147 S-------------------------------------------------------------------GHSQEVCGLRWA 159 (318)
T ss_dssp E-------------------------------------------------------------------CCSSCEEEEEEC
T ss_pred c-------------------------------------------------------------------CccCceEEEEEc
Confidence 1 223334556677
Q ss_pred CCCc-EEEEECCCeEEEEcC-CCC----eeeEeecCCccEEEEEE--cC-CE--EEEEeeCCeEEEEeCCCccccccccc
Q 003217 429 IDGM-IWTGGANGLLLQWDP-NGN----RLQDFQYLPFAVQCLCT--FG-SQ--IWVGYMNGIVQVLDLEGNLLGGWVAH 497 (838)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~----~l~tl~~H~~~V~sls~--dG-~~--LasGs~DgtIrlWD~~g~~i~~l~gH 497 (838)
+++. +++++.|++|++||+ +++ .+.....|...|.++.. ++ .. +++|+.+++|++||...........|
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~ 239 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 239 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccc
Confidence 7776 789999999999999 554 34455678889998865 33 33 45667899999999885544445567
Q ss_pred ccCEEEEE--eCCCEEEE--EcCCCCeeeeecCCCCCCc
Q 003217 498 SSPVIKMA--VGAGYIFT--LANHGGIRGWNVTSPGPLD 532 (838)
Q Consensus 498 ~~~V~sla--~dg~~l~S--~S~DgtIrlWdl~s~~~~d 532 (838)
...|..+. ++++.+++ ++.|++|++||+.+..++.
T Consensus 240 ~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~ 278 (318)
T 4ggc_A 240 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA 278 (318)
T ss_dssp SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE
T ss_pred eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEE
Confidence 77787776 46677665 4589999999998766544
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-21 Score=216.17 Aligned_cols=246 Identities=13% Similarity=0.147 Sum_probs=174.0
Q ss_pred ceeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE
Q 003217 133 CFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (838)
Q Consensus 133 ~~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG 209 (838)
..+.+|+.. +..|.+ +.|++|+|||+.+...... ...| ...|.|++++ +.+|++|
T Consensus 148 ~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~-------------------~~~h-~~~v~~~s~~--~~~l~sg 205 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN-------------------MTSH-SARVGSLSWN--SYILSSG 205 (420)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-------------------ECCC-SSCEEEEEEE--TTEEEEE
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE-------------------EeCC-CCceEEEeeC--CCEEEEE
Confidence 356667665 446665 5699999999987543321 1223 6788888876 5899999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEE
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~ 288 (838)
+.|+++++||..... .....+.+|...|..+.++|+|. |++++.|+.|++|+..+++...... ..
T Consensus 206 s~d~~i~~~d~~~~~-------~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~------~~- 271 (420)
T 4gga_A 206 SRSGHIHHHDVRVAE-------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL------QT- 271 (420)
T ss_dssp ETTSEEEEEETTSSS-------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS------EE-
T ss_pred eCCCceeEeeecccc-------eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee------ee-
Confidence 999999999988753 55677899999999999999998 7899999999999997643211000 00
Q ss_pred EEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEe--C-CCcEEEEeccCccEEEEEecCCceEEeeecccCc
Q 003217 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSA--G-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~--s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~ 364 (838)
... ....+..+++.+.+. .++++ + |++|++||+.+++++..+..+.+
T Consensus 272 --------~~~----------~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~----------- 322 (420)
T 4gga_A 272 --------FTQ----------HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ----------- 322 (420)
T ss_dssp --------ECC----------CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSC-----------
T ss_pred --------ecc----------cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccc-----------
Confidence 000 134577777766444 44443 2 67999999999988766543221
Q ss_pred ccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEE--CCCe
Q 003217 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG--ANGL 441 (838)
Q Consensus 365 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs--~Dgt 441 (838)
+.++.+++++. +++++ .|++
T Consensus 323 ---------------------------------------------------------v~~~~~~~~~~~lv~~sg~~d~~ 345 (420)
T 4gga_A 323 ---------------------------------------------------------VCSILWSPHYKELISGHGFAQNQ 345 (420)
T ss_dssp ---------------------------------------------------------EEEEEEETTTTEEEEEECTTTCC
T ss_pred ---------------------------------------------------------eeeeeecCCCCeEEEEEecCCCE
Confidence 22344555554 55554 7899
Q ss_pred EEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccC
Q 003217 442 LLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP 500 (838)
Q Consensus 442 IrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~ 500 (838)
|++||. +++++.++.+|.+.|+++++ ||++|++|+.|++|+|||+. ....+....|...
T Consensus 346 I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~ 408 (420)
T 4gga_A 346 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKAS 408 (420)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---------
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCC
Confidence 999999 79999999999999999875 78999999999999999985 4455555555443
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-21 Score=218.28 Aligned_cols=226 Identities=16% Similarity=0.153 Sum_probs=172.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc-ccccEEEEEEecCCC-EEEeeCCCcEEEEECC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA-HRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~g-H~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (838)
.+.++.+++ +.+++++.||+|++|++.++ +....+.. |.+.|++|+|+|+|+ |++|+.||+|++||+.
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~--------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNADSG--------SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETTTC--------CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCCCC--------cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 355566664 56888999999999999987 44444444 899999999999998 7899999999999997
Q ss_pred CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccC-ccEEEEE
Q 003217 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART-RELLKVF 348 (838)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~t-g~~l~~l 348 (838)
+++....+.. | ...+.++..+ +..+++++ +++|++||+++ +..+..+
T Consensus 165 ~~~~~~~~~~-------------------~----------~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 213 (401)
T 4aez_A 165 SQTKLRTMAG-------------------H----------QARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTL 213 (401)
T ss_dssp TCCEEEEECC-------------------C----------SSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred CCeEEEEecC-------------------C----------CCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEE
Confidence 7543322221 1 3345666663 45666665 67899999984 3322222
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
. .|...|.+++++
T Consensus 214 ~-------------------------------------------------------------------~~~~~v~~~~~~ 226 (401)
T 4aez_A 214 Q-------------------------------------------------------------------GHSSEVCGLAWR 226 (401)
T ss_dssp E-------------------------------------------------------------------CCSSCEEEEEEC
T ss_pred c-------------------------------------------------------------------CCCCCeeEEEEc
Confidence 1 233456678899
Q ss_pred CCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCC-EEEEEe--eCCeEEEEeCC-CcccccccccccC
Q 003217 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGS-QIWVGY--MNGIVQVLDLE-GNLLGGWVAHSSP 500 (838)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~-~LasGs--~DgtIrlWD~~-g~~i~~l~gH~~~ 500 (838)
|++. +++|+.|++|++||+ +++++.++..|...|.++++ ++. .+++|+ .|++|++||+. ++++..+. |...
T Consensus 227 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~ 305 (401)
T 4aez_A 227 SDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQ 305 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSC
T ss_pred CCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCc
Confidence 9887 889999999999999 68899999999999999976 354 677765 79999999987 67777774 6678
Q ss_pred EEEEEe--CCCEEEE--EcCCCCeeeeecCC
Q 003217 501 VIKMAV--GAGYIFT--LANHGGIRGWNVTS 527 (838)
Q Consensus 501 V~sla~--dg~~l~S--~S~DgtIrlWdl~s 527 (838)
|.++++ +++++++ |+.|+.|++|++.+
T Consensus 306 v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 306 VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp EEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred EEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 999985 7888888 55899999999865
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-21 Score=217.75 Aligned_cols=262 Identities=11% Similarity=0.067 Sum_probs=191.8
Q ss_pred CCEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003217 142 EEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (838)
Q Consensus 142 ~~~l~~g--~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd 219 (838)
++.++++ .|+.|++||+.+...... .....+ ..+ .+.|.+++++++++++++++.|++|++||
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~------------~~~~~~--~~~-~~~v~~~~~~~~~~~~~s~~~d~~v~~~d 197 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQTVRL------------SPPEKY--KKK-LGFVETISIPEHNELWVSQMQANAVHVFD 197 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCCEEEE------------CCCHHH--HTT-CCEEEEEEEGGGTEEEEEEGGGTEEEEEE
T ss_pred CCeEEEEeCCCCeEEEEECCCCeEeee------------cCcccc--ccc-CCceeEEEEcCCCEEEEEECCCCEEEEEE
Confidence 4466653 367899999976543221 000001 122 66899999999999999999999999999
Q ss_pred CCCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeec
Q 003217 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (838)
Q Consensus 220 ~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 297 (838)
+.++ +....+.+|...|.+++|+|+|+ + ++++.|++|++||+.+++....+..
T Consensus 198 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~----------------- 252 (433)
T 3bws_A 198 LKTL--------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK----------------- 252 (433)
T ss_dssp TTTC--------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-----------------
T ss_pred CCCc--------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-----------------
Confidence 9886 56777889999999999999998 5 4677899999999976543221111
Q ss_pred ccceeccceeeeecCCeEEEEEcCCCCEEEEeC---------CCcEEEEeccCccEEEEEecCCceEEeeecccCccccc
Q 003217 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---------FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (838)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s---------~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (838)
...+..++.++++..+++++ ++.|++||+.+++++..+...
T Consensus 253 -------------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~----------------- 302 (433)
T 3bws_A 253 -------------IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP----------------- 302 (433)
T ss_dssp -------------CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE-----------------
T ss_pred -------------CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC-----------------
Confidence 11255677777777777765 568999999988764433100
Q ss_pred ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-E-EEEECCCeEEEEc
Q 003217 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-I-WTGGANGLLLQWD 446 (838)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l-~Sgs~DgtIrlWD 446 (838)
..+..++++|++. + ++++.|+.|++||
T Consensus 303 ---------------------------------------------------~~~~~~~~~~~g~~l~~~~~~~~~v~v~d 331 (433)
T 3bws_A 303 ---------------------------------------------------GNKRHIVSGNTENKIYVSDMCCSKIEVYD 331 (433)
T ss_dssp ---------------------------------------------------ECEEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred ---------------------------------------------------CCcceEEECCCCCEEEEEecCCCEEEEEE
Confidence 0123567888884 4 5668899999999
Q ss_pred C-CCCeeeEeecCCccEEEEEE--cCCEEEEEee---------------CCeEEEEeCC-CcccccccccccCEEEEEe-
Q 003217 447 P-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYM---------------NGIVQVLDLE-GNLLGGWVAHSSPVIKMAV- 506 (838)
Q Consensus 447 ~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~---------------DgtIrlWD~~-g~~i~~l~gH~~~V~sla~- 506 (838)
+ +++++..+. +...+.++++ +|++|++++. ||.|++||++ ++.+..+.++ ..+.++++
T Consensus 332 ~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s 409 (433)
T 3bws_A 332 LKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVS 409 (433)
T ss_dssp TTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEEC
T ss_pred CCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEc
Confidence 9 577777775 6777888865 6888998886 5799999986 6777777664 56888874
Q ss_pred -CCCEEEEEc-CCCCeeeeecC
Q 003217 507 -GAGYIFTLA-NHGGIRGWNVT 526 (838)
Q Consensus 507 -dg~~l~S~S-~DgtIrlWdl~ 526 (838)
+++++++++ .|++|++|++.
T Consensus 410 ~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 410 PDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp TTSCEEEEEETTTTEEEEEEET
T ss_pred CCCCEEEEEECCCCeEEEEEec
Confidence 788888776 59999999975
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-22 Score=218.80 Aligned_cols=260 Identities=7% Similarity=0.046 Sum_probs=172.8
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003217 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (838)
Q Consensus 142 ~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~ 220 (838)
+..+++ +.|++|++||+.+...... +. ..+|.++.++|+ ++||+.|++|++|+.
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~---------------------~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~ 102 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITT---------------------IT-TPNPRTGGEHPA---IISRGPCNRLLLLYP 102 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEE---------------------EE-EECCCTTCCCCS---EEEECSTTEEEEEET
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEE---------------------Ee-cCCceeeeeCCc---eEEecCCCeEEEEEc
Confidence 445555 5699999999976543211 11 346778888887 999999999999987
Q ss_pred CCCccC-CCCCcceeEEe-ccccccEEEEEEec--CCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeecee
Q 003217 221 NARLLD-SDDGFGEVLSW-QAHRGPVLSLCISS--YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (838)
Q Consensus 221 ~~g~~~-~~~~~~~~~~l-~gH~~~V~slafs~--dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 295 (838)
...... +....+....+ .+|.++|.+++|+| +++ |+||+.|++|++||+.+++.......
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--------------- 167 (343)
T 3lrv_A 103 GNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA--------------- 167 (343)
T ss_dssp TTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC---------------
T ss_pred cCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec---------------
Confidence 642100 00000223333 37789999999999 888 78999999999999977543211100
Q ss_pred ecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEE-EEEecCCceEEeeecccCccccccccee
Q 003217 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELL-KVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (838)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l-~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (838)
+ ....+.++++++++..+++++ +++|++||+++++.+ ..+..
T Consensus 168 ----~---------~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~----------------------- 211 (343)
T 3lrv_A 168 ----K---------SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV----------------------- 211 (343)
T ss_dssp ----C---------SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-----------------------
T ss_pred ----C---------CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-----------------------
Confidence 0 022467788888888998876 689999999887643 22211
Q ss_pred eEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCe
Q 003217 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNR 451 (838)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~ 451 (838)
.|...|.+++|+|+|. |++|+ |++|++||+ ++++
T Consensus 212 -------------------------------------------~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 212 -------------------------------------------DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVG 247 (343)
T ss_dssp -------------------------------------------CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTT
T ss_pred -------------------------------------------cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCc
Confidence 1445677899999998 67777 559999999 6766
Q ss_pred eeEeec---CCccEE--EEE--EcCCEEEEEee-CCeEEEEeCCCcccccccccccCEEEEEe-----CCCEEEEEcCCC
Q 003217 452 LQDFQY---LPFAVQ--CLC--TFGSQIWVGYM-NGIVQVLDLEGNLLGGWVAHSSPVIKMAV-----GAGYIFTLANHG 518 (838)
Q Consensus 452 l~tl~~---H~~~V~--sls--~dG~~LasGs~-DgtIrlWD~~g~~i~~l~gH~~~V~sla~-----dg~~l~S~S~Dg 518 (838)
++++.. |...+. +++ ++|++|++|+. |+.|+||+.+... ..|.. ..+..+.+ +.+.+++++.|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~ 324 (343)
T 3lrv_A 248 TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT-KNWTK--DEESALCLQSDTADFTDMDVVCGDG 324 (343)
T ss_dssp CBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT-CSEEE--EEEEECCC----CCCCEEEEEEETT
T ss_pred ceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc-cceEe--cCceeEecCccccccceeEEEecCC
Confidence 655543 444443 354 46899999998 9999999985211 11111 33444432 456788888899
Q ss_pred Ceeeee
Q 003217 519 GIRGWN 524 (838)
Q Consensus 519 tIrlWd 524 (838)
++++|-
T Consensus 325 ~~~~~~ 330 (343)
T 3lrv_A 325 GIAAIL 330 (343)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 888875
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.1e-22 Score=216.19 Aligned_cols=206 Identities=11% Similarity=0.070 Sum_probs=130.0
Q ss_pred CCCeEEEEEcCC----CCEEEEEeC--------------------CCcEEEEECCC-CccCCCCCcceeEEeccccccEE
Q 003217 191 VSSVMCMVGDEA----SGVVWSGHR--------------------DGRIMCWKMNA-RLLDSDDGFGEVLSWQAHRGPVL 245 (838)
Q Consensus 191 ~~~V~~la~s~d----g~~LaSGs~--------------------DGtIrvWd~~~-g~~~~~~~~~~~~~l~gH~~~V~ 245 (838)
.+.|.+|+++|+ ++++++++. |++|++|++.. | +.+..+.+|...|+
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG--------~~~~s~~~~~~~v~ 182 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG--------GGKENQFLMPPEET 182 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTS--------CEEEEEEECCCSSC
T ss_pred ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCC--------ceeeeeccCCCcee
Confidence 557889999999 888888764 88888888844 4 55667778888888
Q ss_pred EEEEec---CCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccce---eeeecCCeEEEE
Q 003217 246 SLCISS---YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF---SSILTSDIKNLL 318 (838)
Q Consensus 246 slafs~---dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~---~~~~s~~v~~la 318 (838)
.++|++ ++. |+|||.|++|||||+.+++...++..+..+ ...+ .+.|. ...++.
T Consensus 183 ~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~------------------v~~v~~vafSpd-G~~lvs 243 (356)
T 2w18_A 183 ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY------------------QASVCHKAYSEM-GLLFIV 243 (356)
T ss_dssp EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---------------------CCCEEEEEEET-TEEEEE
T ss_pred eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc------------------eeeeEEEEECCC-CCEEEE
Confidence 888988 556 789999999999999987655444321110 1111 12221 122222
Q ss_pred EcCCCC--EEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecC
Q 003217 319 SDHSRA--KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRS 395 (838)
Q Consensus 319 s~~~~~--~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~ 395 (838)
.+++.. .+++++ +.+|++||..+++++.++... + + .
T Consensus 244 ~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~--------~-p-----------------~--------------- 282 (356)
T 2w18_A 244 LSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC--------L-P-----------------P--------------- 282 (356)
T ss_dssp EC------------CCEEEEEEETTTTEEEEEEEEC--------C-C-----------------T---------------
T ss_pred eccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee--------c-c-----------------C---------------
Confidence 222111 245565 579999999999887655210 0 0 0
Q ss_pred cceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEE-EE--EEcCCE
Q 003217 396 RNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ-CL--CTFGSQ 471 (838)
Q Consensus 396 ~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~-sl--s~dG~~ 471 (838)
| |...+.+..++ +..+++|+.|++|||||+ +|+++++|.+|...|. ++ ++||++
T Consensus 283 -----G----------------h~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~ 340 (356)
T 2w18_A 283 -----G----------------QAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSH 340 (356)
T ss_dssp -----T----------------CCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSE
T ss_pred -----C----------------CcceeEccccC-CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCE
Confidence 0 00000011111 224789999999999999 7999999999987654 34 568999
Q ss_pred EEEEeeCCeEEEEeC
Q 003217 472 IWVGYMNGIVQVLDL 486 (838)
Q Consensus 472 LasGs~DgtIrlWD~ 486 (838)
|++|+.|++|||||.
T Consensus 341 LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 341 LLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEEECCCcEEEecC
Confidence 999999999999995
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-20 Score=205.85 Aligned_cols=229 Identities=11% Similarity=0.093 Sum_probs=146.6
Q ss_pred ceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeee
Q 003217 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (838)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~ 310 (838)
+.+.++.+|.++|++|+|+|||+ |++|+.| .++||++++.+.......
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~------------------------------ 58 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEM------------------------------ 58 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEEC------------------------------
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeec------------------------------
Confidence 44556789999999999999999 5666655 589999866433221110
Q ss_pred cCCeEEEEEcCCCCEE-EEe-CCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceee
Q 003217 311 TSDIKNLLSDHSRAKV-WSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSS 388 (838)
Q Consensus 311 s~~v~~las~~~~~~V-~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s 388 (838)
..+..+...+.+..+ .++ ++++|++||+.+++++..+..+..+ ..+.++...
T Consensus 59 -~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v-~~v~~~~~~------------------------ 112 (355)
T 3vu4_A 59 -RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPV-KDLFLSREF------------------------ 112 (355)
T ss_dssp -SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCE-EEEEECSSE------------------------
T ss_pred -CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCce-EEEEEcCCE------------------------
Confidence 012223333344444 333 3579999999999998887644322 222222210
Q ss_pred eeEeecCcceeeecCCcEEEEec--cC-ccccCC-CceEEEEEcCCCcEEE--EECCCeEEEEcC-CCC-----------
Q 003217 389 FGFFQRSRNAIMGAADAVRRVAA--KG-GFGDDN-RRTEALTTSIDGMIWT--GGANGLLLQWDP-NGN----------- 450 (838)
Q Consensus 389 ~~~~~~~~~~~~g~~~~v~~v~~--~g-~~~~~~-~~v~ala~S~dg~l~S--gs~DgtIrlWD~-~g~----------- 450 (838)
.++.. ++..+++. .+ ...... .....+++++ ..++. |+.||+|++||+ +++
T Consensus 113 ---------~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~ 181 (355)
T 3vu4_A 113 ---------IVVSY-GDVISVFKFGNPWKRITDDIRFGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ 181 (355)
T ss_dssp ---------EEEEE-TTEEEEEESSTTCCBSSCCEEEEEEEEEET-TEEEEEESSCTTCEEEEECCC-------------
T ss_pred ---------EEEEE-cCEEEEEECCCCceeeEEeccCCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccc
Confidence 01111 11122221 01 000000 0222345666 55554 578999999999 444
Q ss_pred -----eeeEeecCCccEEEEEE--cCCEEEEEeeCCe-EEEEeCC-Cccccccc-c-cccCEEEEEe--CCCEEEEEcCC
Q 003217 451 -----RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGI-VQVLDLE-GNLLGGWV-A-HSSPVIKMAV--GAGYIFTLANH 517 (838)
Q Consensus 451 -----~l~tl~~H~~~V~sls~--dG~~LasGs~Dgt-IrlWD~~-g~~i~~l~-g-H~~~V~sla~--dg~~l~S~S~D 517 (838)
+++++.+|...|+++++ +|++|++|+.|++ |+|||+. ++++.++. + |...|.++++ +++++++++.|
T Consensus 182 ~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d 261 (355)
T 3vu4_A 182 KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDK 261 (355)
T ss_dssp -----CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETT
T ss_pred cccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECC
Confidence 37889999999999976 7899999999998 9999997 78889998 6 9999999985 78899999999
Q ss_pred CCeeeeecCCC
Q 003217 518 GGIRGWNVTSP 528 (838)
Q Consensus 518 gtIrlWdl~s~ 528 (838)
++|++||+..+
T Consensus 262 ~~v~iw~~~~~ 272 (355)
T 3vu4_A 262 WTLHVFEIFND 272 (355)
T ss_dssp CEEEEEESSCC
T ss_pred CEEEEEEccCC
Confidence 99999998764
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-20 Score=209.75 Aligned_cols=242 Identities=14% Similarity=0.132 Sum_probs=168.0
Q ss_pred EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 003217 144 QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG-VVWSGHRDGRIMCWKMN 221 (838)
Q Consensus 144 ~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~-~LaSGs~DGtIrvWd~~ 221 (838)
.|++ +.|+.|++||+.+...... ..+ ..........| ..+|.+|+|+|++. +|++|+.||+|++|++.
T Consensus 143 ~lat~~~dg~V~vwd~~~~~~~~~--------~~~-~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 212 (430)
T 2xyi_A 143 VIATKTPSSDVLVFDYTKHPSKPE--------PSG-ECQPDLRLRGH-QKEGYGLSWNPNLNGYLLSASDDHTICLWDIN 212 (430)
T ss_dssp EEEEECSSSCEEEEEGGGSCSSCC--------TTC-CCCCSEEEECC-SSCCCCEEECTTSTTEEEEECTTSCEEEEETT
T ss_pred EEEEECCCCcEEEEECCCcccccC--------ccc-cCCCcEEecCC-CCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCC
Confidence 3444 4588999999965211100 000 00111122233 77999999999988 99999999999999998
Q ss_pred CCccCCCCCcceeEEeccccccEEEEEEecC-CC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeeccc
Q 003217 222 ARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (838)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 299 (838)
++.. ..........+.+|...|.+++|+|+ +. |++|+.|++|++||+.+..... ... .+..
T Consensus 213 ~~~~-~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~-------~~~---------~~~~ 275 (430)
T 2xyi_A 213 ATPK-EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK-------PSH---------TVDA 275 (430)
T ss_dssp SCCB-GGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS-------CSE---------EEEC
T ss_pred CCCC-CCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc-------cee---------Eeec
Confidence 7410 00011124567899999999999994 45 6899999999999997642100 000 0011
Q ss_pred ceeccceeeeecCCeEEEEEcCCCC-EEEEeC-CCcEEEEeccCc-cEEEEEecCCceEEeeecccCcccccccceeeEE
Q 003217 300 HLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTR-ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (838)
Q Consensus 300 ~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~~tI~lWD~~tg-~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (838)
| ...+.++++.+.+. .+++++ +++|++||+++. +++.++
T Consensus 276 ~----------~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~---------------------------- 317 (430)
T 2xyi_A 276 H----------TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF---------------------------- 317 (430)
T ss_dssp C----------SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE----------------------------
T ss_pred C----------CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe----------------------------
Confidence 1 45688888888776 566665 689999999863 222222
Q ss_pred EecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc--EEEEECCCeEEEEcCCC-----
Q 003217 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPNG----- 449 (838)
Q Consensus 377 ~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~--l~Sgs~DgtIrlWD~~g----- 449 (838)
..|...|.++.++|++. +++++.|++|++||+..
T Consensus 318 ---------------------------------------~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~ 358 (430)
T 2xyi_A 318 ---------------------------------------ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358 (430)
T ss_dssp ---------------------------------------ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred ---------------------------------------ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence 12334566788999884 78999999999999932
Q ss_pred ----------CeeeEeecCCccEEEEEE--cCC-EEEEEeeCCeEEEEeCCCc
Q 003217 450 ----------NRLQDFQYLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLEGN 489 (838)
Q Consensus 450 ----------~~l~tl~~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~g~ 489 (838)
+++..+.+|...|+++++ +++ +|++++.||.|+||++...
T Consensus 359 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 677888899999999976 577 8999999999999998743
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=8e-19 Score=194.50 Aligned_cols=264 Identities=10% Similarity=0.091 Sum_probs=182.6
Q ss_pred eEEEEec--CCEEEE-e-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEE-EE
Q 003217 135 LRTIVCT--EEQLWA-G-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW-SG 209 (838)
Q Consensus 135 ~~~l~~~--~~~l~~-g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~La-SG 209 (838)
+..++.+ ++.+++ + .|+.|++||+.+...... +.+...|.+++|+|+++.|+ ++
T Consensus 34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~---------------------~~~~~~v~~~~~spdg~~l~~~~ 92 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT---------------------VPAGSSPQGVAVSPDGKQVYVTN 92 (391)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE---------------------EECSSSEEEEEECTTSSEEEEEE
T ss_pred cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE---------------------EECCCCccceEECCCCCEEEEEE
Confidence 3455544 446655 3 689999999976543211 11134899999999999775 55
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCcEEEEECCCcceeeecCCCceeeeE
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~ 287 (838)
+.|++|++||+.++ +....+..| ..+.+++|+|+|+ | ++++.|++|++||+.+++....+..
T Consensus 93 ~~~~~v~v~d~~~~--------~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------- 156 (391)
T 1l0q_A 93 MASSTLSVIDTTSN--------TVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV------- 156 (391)
T ss_dssp TTTTEEEEEETTTT--------EEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-------
T ss_pred CCCCEEEEEECCCC--------eEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec-------
Confidence 57799999999986 455555554 4789999999998 6 6899999999999976543221110
Q ss_pred EEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEE-EeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcc
Q 003217 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (838)
Q Consensus 288 ~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~-s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (838)
...+..+++++++..++ +++ ++.|++||+++++++..+..+
T Consensus 157 -----------------------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-------------- 199 (391)
T 1l0q_A 157 -----------------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-------------- 199 (391)
T ss_dssp -----------------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--------------
T ss_pred -----------------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC--------------
Confidence 12345677777787774 444 468999999988765443211
Q ss_pred cccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEE---CCCe
Q 003217 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG---ANGL 441 (838)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs---~Dgt 441 (838)
..+.+++++|+|. +++++ .++.
T Consensus 200 ------------------------------------------------------~~~~~~~~~~~g~~l~~~~~~~~~~~ 225 (391)
T 1l0q_A 200 ------------------------------------------------------AAPSGIAVNPEGTKAYVTNVDKYFNT 225 (391)
T ss_dssp ------------------------------------------------------SEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred ------------------------------------------------------CCccceEECCCCCEEEEEecCcCCCc
Confidence 1133567888886 67776 6899
Q ss_pred EEEEcC-CCCeeeEeecCCccEEEEE--EcCCEE-EEEeeCCeEEEEeCC-CcccccccccccCEE------E-------
Q 003217 442 LLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQI-WVGYMNGIVQVLDLE-GNLLGGWVAHSSPVI------K------- 503 (838)
Q Consensus 442 IrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~L-asGs~DgtIrlWD~~-g~~i~~l~gH~~~V~------s------- 503 (838)
|++||+ +++++..+..|.. +.+++ ++|++| ++++.|+.|++||++ ++++..+..|..+.. .
T Consensus 226 v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (391)
T 1l0q_A 226 VSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVY 304 (391)
T ss_dssp EEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCC
T ss_pred EEEEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccc
Confidence 999999 6888888887764 56665 468877 566789999999987 777777776655431 1
Q ss_pred ----EEeCC----------CEEEEEcCCCCeeeeecCC
Q 003217 504 ----MAVGA----------GYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 504 ----la~dg----------~~l~S~S~DgtIrlWdl~s 527 (838)
...+. -.+.+.+.|.++++|++..
T Consensus 305 ~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 342 (391)
T 1l0q_A 305 PSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGD 342 (391)
T ss_dssp CBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSS
T ss_pred cccccccccccccccccceEEEEeCCCCceEEEEECCC
Confidence 11111 2355667788888888754
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-20 Score=226.75 Aligned_cols=240 Identities=11% Similarity=0.142 Sum_probs=170.3
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC--CCEEEE
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGVVWS 208 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d--g~~LaS 208 (838)
.+++++.+ ++.|.+ +.|++|+|||+...... + . .....| .++|.|++|+++ +++|+|
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~-~--------------~--~~l~~h-~~~V~~l~~s~~~~~~~l~s 72 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK-L--------------I--DTLTGH-EGPVWRVDWAHPKFGTILAS 72 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEE-E--------------E--EEECCC-SSCEEEEEECCTTSCSEEEE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCc-c--------------c--eeccCC-cCceEEEEecCCCCCCEEEE
Confidence 35555543 445665 46899999998632110 0 0 011123 789999999988 999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC--CC-EEEeeCCCcEEEEECCCcceeeecCCCceee
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~ 285 (838)
|+.||+|++||+.++. ......+.+|..+|++++|+|+ |. |++|+.||+|++||+.+........
T Consensus 73 ~s~Dg~I~vwd~~~~~------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~------ 140 (753)
T 3jro_A 73 CSYDGKVLIWKEENGR------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII------ 140 (753)
T ss_dssp EETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE------
T ss_pred EeCCCeEEEEECCCCc------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE------
Confidence 9999999999998861 1256778899999999999999 77 7899999999999997642211000
Q ss_pred eEEEEeeceeecccceeccceeeeecCCeEEEEEcC-------------CCCEEEEeC-CCcEEEEeccCccEEEEEecC
Q 003217 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-------------SRAKVWSAG-FLSFALWDARTRELLKVFNID 351 (838)
Q Consensus 286 ~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-------------~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~ 351 (838)
+.+| ...+.++++.+ ++..+++++ +++|++||++++.....+.
T Consensus 141 -----------~~~~----------~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~-- 197 (753)
T 3jro_A 141 -----------IDAH----------AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-- 197 (753)
T ss_dssp -----------EECC----------SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE--
T ss_pred -----------eecC----------CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee--
Confidence 0011 33456666655 355666665 6899999997753211000
Q ss_pred CceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCC-
Q 003217 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID- 430 (838)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~d- 430 (838)
. .+..|...|.+++++|+
T Consensus 198 --------------------------~-----------------------------------~~~~h~~~V~~l~~sp~~ 216 (753)
T 3jro_A 198 --------------------------S-----------------------------------TLEGHSDWVRDVAWSPTV 216 (753)
T ss_dssp --------------------------E-----------------------------------EECCCSSCEEEEEECCCC
T ss_pred --------------------------e-----------------------------------eecCCCCcEEEEEeccCC
Confidence 0 02234556778999998
Q ss_pred --Cc-EEEEECCCeEEEEcC-CCC-----eeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 431 --GM-IWTGGANGLLLQWDP-NGN-----RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 431 --g~-l~Sgs~DgtIrlWD~-~g~-----~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
+. +++|+.||+|++||+ +++ .+.....|...|+++++ +|++|++|+.||.|++||+.
T Consensus 217 ~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 217 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp SSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred CCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 66 799999999999999 443 33444568889998865 78899999999999999986
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.8e-19 Score=198.44 Aligned_cols=230 Identities=13% Similarity=0.112 Sum_probs=170.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeE-----EeccccccEEEEEEecCCC-EEEeeCCCcEE
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVL-----SWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~-----~l~gH~~~V~slafs~dG~-L~SgS~DgtIr 265 (838)
..+.|++++|++.++++++.|++|++||+.++ +... .+.+|.+.|++++|+++|+ +++++.|++|+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~ 194 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSG--------QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVH 194 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTC--------CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEE
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCC--------eEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEE
Confidence 45669999998888888999999999999987 3444 4568999999999999998 57999999999
Q ss_pred EEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEE-EeC-CCcEEEEeccCcc
Q 003217 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-FLSFALWDARTRE 343 (838)
Q Consensus 266 vWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~-s~s-~~tI~lWD~~tg~ 343 (838)
+||+++++....+.. + ...+.++++++++..++ ++. +++|++||+.+++
T Consensus 195 ~~d~~~~~~~~~~~~-------------------~----------~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 195 VFDLKTLAYKATVDL-------------------T----------GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp EEETTTCCEEEEEEC-------------------S----------SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred EEECCCceEEEEEcC-------------------C----------CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence 999976543222110 1 23567788888887775 443 5789999999887
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceE
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (838)
++..+..+ ..+.
T Consensus 246 ~~~~~~~~--------------------------------------------------------------------~~~~ 257 (433)
T 3bws_A 246 EIRKTDKI--------------------------------------------------------------------GLPR 257 (433)
T ss_dssp EEEECCCC--------------------------------------------------------------------SEEE
T ss_pred EEEEecCC--------------------------------------------------------------------CCce
Confidence 65443211 1134
Q ss_pred EEEEcCCCc-EEEEE--------CCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEE-EEEeeCCeEEEEeCC-Cc
Q 003217 424 ALTTSIDGM-IWTGG--------ANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQI-WVGYMNGIVQVLDLE-GN 489 (838)
Q Consensus 424 ala~S~dg~-l~Sgs--------~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~L-asGs~DgtIrlWD~~-g~ 489 (838)
+++++|+|. +++++ .|+.|++||+ +++.+..+ .|...+.++++ +|+++ ++++.|+.|++||++ ++
T Consensus 258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence 567888885 67766 5889999999 56666655 45667777765 67755 556789999999997 56
Q ss_pred ccccccccccCEEEEEe--CCCEEEEEcC---------------CCCeeeeecCCC
Q 003217 490 LLGGWVAHSSPVIKMAV--GAGYIFTLAN---------------HGGIRGWNVTSP 528 (838)
Q Consensus 490 ~i~~l~gH~~~V~sla~--dg~~l~S~S~---------------DgtIrlWdl~s~ 528 (838)
++..+. |...+.++++ +++++++++. ||.|++||+.+.
T Consensus 337 ~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 337 VQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp EEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred EEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC
Confidence 666664 7778888875 6778887765 579999997653
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-18 Score=201.63 Aligned_cols=274 Identities=8% Similarity=-0.047 Sum_probs=182.5
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec-cccccEEEEEEecCCC-EEEeeCCCcEEEEEC--CCcc
Q 003217 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW--EAIE 273 (838)
Q Consensus 198 a~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~--~~~~ 273 (838)
+++|++.++++++.|++|++||..++ +.+.++. +|. +.+++|+|||+ |++++.|++|++||+ .+++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~--------~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~ 213 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSK--------KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT 213 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTC--------CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCc--------eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCc
Confidence 47899999999999999999999987 5667777 454 89999999998 789999999999999 5533
Q ss_pred eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC----CCCEEEEeC--CCcEEEEeccCccEEEE
Q 003217 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH----SRAKVWSAG--FLSFALWDARTRELLKV 347 (838)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~----~~~~V~s~s--~~tI~lWD~~tg~~l~~ 347 (838)
...++.. ......+++++ ++..+++++ +.+|.+||..|++++++
T Consensus 214 ~~~~i~~------------------------------g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~ 263 (543)
T 1nir_A 214 KVAEIKI------------------------------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI 263 (543)
T ss_dssp EEEEEEC------------------------------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE
T ss_pred EEEEEec------------------------------CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccccee
Confidence 2111100 12356788888 888888887 47999999999999988
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcce-eeecCCcEEEEec-c-Cc-----cccCC
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNA-IMGAADAVRRVAA-K-GG-----FGDDN 419 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~-~~g~~~~v~~v~~-~-g~-----~~~~~ 419 (838)
+...+.......+.+. .....+.+++.+... +....++...+.. . +. ...+.
T Consensus 264 i~~~g~~~~~~~~~~~--------------------~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~ 323 (543)
T 1nir_A 264 VSTRGMTVDTQTYHPE--------------------PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA 323 (543)
T ss_dssp EECCEECSSSCCEESC--------------------CCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECC
T ss_pred ecccCcccCccccccC--------------------CceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccC
Confidence 7643210000000000 000011111111111 1112222222211 0 00 11123
Q ss_pred CceEEEEEcCCCc-EEEE-ECCCeEEEEcC-CCCeeeEeec----CCccEEEE-EEcCC-EEEEEe-eCCeEEEEeCC--
Q 003217 420 RRTEALTTSIDGM-IWTG-GANGLLLQWDP-NGNRLQDFQY----LPFAVQCL-CTFGS-QIWVGY-MNGIVQVLDLE-- 487 (838)
Q Consensus 420 ~~v~ala~S~dg~-l~Sg-s~DgtIrlWD~-~g~~l~tl~~----H~~~V~sl-s~dG~-~LasGs-~DgtIrlWD~~-- 487 (838)
..+..++|+|||+ ++++ ..+++|++||. +|+++.++.. |......+ .+++. .++++. .|++|.|||+.
T Consensus 324 ~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~ 403 (543)
T 1nir_A 324 PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK 403 (543)
T ss_dssp SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCC
Confidence 3455789999998 5544 46889999999 7899888874 66544444 45544 555554 58999999975
Q ss_pred ------CcccccccccccCEEEEE--eCCCEEEEEc-------CCCCeeeeecCCCCCC
Q 003217 488 ------GNLLGGWVAHSSPVIKMA--VGAGYIFTLA-------NHGGIRGWNVTSPGPL 531 (838)
Q Consensus 488 ------g~~i~~l~gH~~~V~sla--~dg~~l~S~S-------~DgtIrlWdl~s~~~~ 531 (838)
+++++++.+|.+.+..|+ +++++|++++ .+++|++||+.+....
T Consensus 404 ~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 404 NHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp TCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 468899999998887777 5788999887 3789999999887654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-17 Score=194.00 Aligned_cols=308 Identities=11% Similarity=0.036 Sum_probs=193.1
Q ss_pred EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-
Q 003217 144 QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM- 220 (838)
Q Consensus 144 ~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~- 220 (838)
.+++ +.|++|++||..+...... +.....+.+++|+|||++|++++.|++|++||+
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~~~~~~---------------------i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~ 208 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSKKIVKV---------------------IDTGYAVHISRMSASGRYLLVIGRDARIDMIDLW 208 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEE---------------------EECSTTEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred EEEEEEcCCCeEEEEECCCceEEEE---------------------EecCcccceEEECCCCCEEEEECCCCeEEEEECc
Confidence 5554 3578999999877543321 110123889999999999999999999999999
Q ss_pred -CCCccCCCCCcceeEEeccccccEEEEEEec----CCC-EEEee-CCCcEEEEECCCcceeeecCCCceeeeEEEEeec
Q 003217 221 -NARLLDSDDGFGEVLSWQAHRGPVLSLCISS----YGD-LWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (838)
Q Consensus 221 -~~g~~~~~~~~~~~~~l~gH~~~V~slafs~----dG~-L~SgS-~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (838)
.++ +.+.++.. ...+.+|+|+| ||+ |++++ .+++|+|||..+.+....+....
T Consensus 209 ~~t~--------~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g----------- 268 (543)
T 1nir_A 209 AKEP--------TKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG----------- 268 (543)
T ss_dssp SSSC--------EEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCE-----------
T ss_pred CCCC--------cEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccC-----------
Confidence 665 55666664 44679999999 998 67776 58999999997755432221100
Q ss_pred eeecccceeccceeeeecCCeEEEEEcCCCCEEE-EeC-CCcEEEEeccCccEEE--EEecCCceEEeeecccCcccccc
Q 003217 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-FLSFALWDARTRELLK--VFNIDGQIENRVDMSLLPDFAME 369 (838)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~-s~s-~~tI~lWD~~tg~~l~--~l~~~~~~~~~~~~s~~~~~~~~ 369 (838)
. ...+....+.+.+..+++++++..++ +.. +++|.+||+.+++.++ .+. .+.....
T Consensus 269 ------~-~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~------------ 328 (543)
T 1nir_A 269 ------M-TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHD------------ 328 (543)
T ss_dssp ------E-CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCC------------
T ss_pred ------c-ccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccC------------
Confidence 0 00000111233566677777665443 443 4689999998876544 222 1111111
Q ss_pred cceeeEEEecCCCCcceeeeeEeecCcceeeec-CC-cEEEEec-cCcc--------ccCCCceEEEEEcCC-CcEE-EE
Q 003217 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-AD-AVRRVAA-KGGF--------GDDNRRTEALTTSID-GMIW-TG 436 (838)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~-~~-~v~~v~~-~g~~--------~~~~~~v~ala~S~d-g~l~-Sg 436 (838)
+.|.++++.++++. .+ .+..+.. .+.+ ..|..+...+ ++|+ |.++ ++
T Consensus 329 -------------------~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~ 388 (543)
T 1nir_A 329 -------------------GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTS 388 (543)
T ss_dssp -------------------EEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEE
T ss_pred -------------------ceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEec
Confidence 12222222222221 11 1111111 1111 1133333333 4565 6654 55
Q ss_pred E-CCCeEEEEcC-C-------CCeeeEeecCCccEEEEE--EcCCEEEEEe-------eCCeEEEEeCC-Cccc-cc---
Q 003217 437 G-ANGLLLQWDP-N-------GNRLQDFQYLPFAVQCLC--TFGSQIWVGY-------MNGIVQVLDLE-GNLL-GG--- 493 (838)
Q Consensus 437 s-~DgtIrlWD~-~-------g~~l~tl~~H~~~V~sls--~dG~~LasGs-------~DgtIrlWD~~-g~~i-~~--- 493 (838)
+ .|++|++||+ + +++++++.+|...+..+. ++|++||+++ .+++|.|||++ ++.. ..
T Consensus 389 ~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v 468 (543)
T 1nir_A 389 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI 468 (543)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH
T ss_pred cCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeec
Confidence 4 5899999999 5 789999999988877664 5899999987 37899999987 4443 33
Q ss_pred -----ccccccCEEEEEe--CCCEEEEE-----cCCCCeeeeecCCCCCCc
Q 003217 494 -----WVAHSSPVIKMAV--GAGYIFTL-----ANHGGIRGWNVTSPGPLD 532 (838)
Q Consensus 494 -----l~gH~~~V~sla~--dg~~l~S~-----S~DgtIrlWdl~s~~~~d 532 (838)
+..|...|..+++ +|+.++.+ +.|++|.+||..+...+.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~ 519 (543)
T 1nir_A 469 AEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA 519 (543)
T ss_dssp HHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred hhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEE
Confidence 2456778888874 78887744 358999999988765543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-17 Score=185.89 Aligned_cols=234 Identities=11% Similarity=0.026 Sum_probs=160.4
Q ss_pred CCEEEEEeCC------CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCC---cEEEEECCCc
Q 003217 203 SGVVWSGHRD------GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG---GIKIWPWEAI 272 (838)
Q Consensus 203 g~~LaSGs~D------GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dg---tIrvWd~~~~ 272 (838)
++.|+.++.+ ++|++||++++ ....+.+|.+.|.+++|||||+ |++++.|+ +|++||+.++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~---------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg 213 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGY---------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG 213 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSC---------SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCC---------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence 5666666654 79999999863 4567889999999999999998 78888875 9999999775
Q ss_pred ceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEE-EeC-C--CcEEEEeccCccEEEEE
Q 003217 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-F--LSFALWDARTRELLKVF 348 (838)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~-s~s-~--~tI~lWD~~tg~~l~~l 348 (838)
+.. .+.. + ...+..+++++++.+|+ +++ + ..|++||+.++++ ..+
T Consensus 214 ~~~-~l~~-------------------~----------~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l 262 (415)
T 2hqs_A 214 AVR-QVAS-------------------F----------PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQV 262 (415)
T ss_dssp CEE-EEEC-------------------C----------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEC
T ss_pred cEE-Eeec-------------------C----------CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeC
Confidence 432 1110 1 23466778888888666 544 2 3599999999887 444
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecC-C---cEEEEec-cC---ccccCCC
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-D---AVRRVAA-KG---GFGDDNR 420 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~-~---~v~~v~~-~g---~~~~~~~ 420 (838)
..+......+.++++. ..++.++. + .++.+.. .+ .+..+..
T Consensus 263 ~~~~~~~~~~~~spdg-------------------------------~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~ 311 (415)
T 2hqs_A 263 TDGRSNNTEPTWFPDS-------------------------------QNLAFTSDQAGRPQVYKVNINGGAPQRITWEGS 311 (415)
T ss_dssp CCCSSCEEEEEECTTS-------------------------------SEEEEEECTTSSCEEEEEETTSSCCEECCCSSS
T ss_pred cCCCCcccceEECCCC-------------------------------CEEEEEECCCCCcEEEEEECCCCCEEEEecCCC
Confidence 4444333334443322 21111111 1 1222222 11 1223445
Q ss_pred ceEEEEEcCCCc-EEEEECC---CeEEEEcCC-CCeeeEeecCCccEEEEE--EcCCEEEEEeeCC---eEEEEeCCCcc
Q 003217 421 RTEALTTSIDGM-IWTGGAN---GLLLQWDPN-GNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNG---IVQVLDLEGNL 490 (838)
Q Consensus 421 ~v~ala~S~dg~-l~Sgs~D---gtIrlWD~~-g~~l~tl~~H~~~V~sls--~dG~~LasGs~Dg---tIrlWD~~g~~ 490 (838)
.+.+++++|||+ |++++.+ ..|++||+. +++ ..+..|. .+.+++ ++|++|++++.++ .|++||++|+.
T Consensus 312 ~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 312 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 677899999998 6666653 589999994 555 5566664 677665 4799999988877 89999999988
Q ss_pred cccccccccCEEEEEeCCC
Q 003217 491 LGGWVAHSSPVIKMAVGAG 509 (838)
Q Consensus 491 i~~l~gH~~~V~sla~dg~ 509 (838)
...+.+|.+.|.++++.+.
T Consensus 390 ~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 390 KARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp EEECCCSSSEEEEEEECCC
T ss_pred EEEeeCCCCCCcCCccccc
Confidence 9999999999999998764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7e-16 Score=194.39 Aligned_cols=362 Identities=9% Similarity=-0.058 Sum_probs=216.6
Q ss_pred ceeEEEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 003217 133 CFLRTIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (838)
Q Consensus 133 ~~~~~l~~~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~D 212 (838)
..++..+.+++.|....++.|++||+...... .+. .+ ...|.+++|||||++||+++.+
T Consensus 15 ~~~~~~~~S~~~iaf~~~~~l~~~~~~gg~~~------------------~lt--~~-~~~v~~~~~SPDG~~la~~s~~ 73 (1045)
T 1k32_A 15 NLLLNPDIHGDRIIFVCCDDLWEHDLKSGSTR------------------KIV--SN-LGVINNARFFPDGRKIAIRVMR 73 (1045)
T ss_dssp CCCEEEEEETTEEEEEETTEEEEEETTTCCEE------------------EEE--CS-SSEEEEEEECTTSSEEEEEEEE
T ss_pred ceEeCcEEeCCEEEEEECCcEEEEECCCCcEE------------------Eee--eC-CCcccCeEECCCCCEEEEEEee
Confidence 35556665677666666689999998653321 111 22 6789999999999999988754
Q ss_pred ----C--cEEEEECCCCccCCCCCcceeEEeccccccE-------EEEEEecCCC-EEEeeCC----C--cEEEEECCCc
Q 003217 213 ----G--RIMCWKMNARLLDSDDGFGEVLSWQAHRGPV-------LSLCISSYGD-LWSGSEG----G--GIKIWPWEAI 272 (838)
Q Consensus 213 ----G--tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V-------~slafs~dG~-L~SgS~D----g--tIrvWd~~~~ 272 (838)
+ .|.+|++.++ ....+.+|...| .+++|||||+ +++++.| + .|.+|++.++
T Consensus 74 ~~~~~~~~i~~~d~~~g---------~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g 144 (1045)
T 1k32_A 74 GSSLNTADLYFYNGENG---------EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI 144 (1045)
T ss_dssp STTCCEEEEEEEETTTT---------EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT
T ss_pred ccCCCCCeEEEEECCCC---------CeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCC
Confidence 3 7999999885 366788999998 9999999999 4677755 3 5777777654
Q ss_pred ceeeecCCCceeeeEEE----Ee-e---ceeecccc--eecccee-----------eeecCCeEEEEEcCCCCEEEEeC-
Q 003217 273 EKALSLKPEERHTAALI----VE-R---SYIDLRSH--LSVNGFS-----------SILTSDIKNLLSDHSRAKVWSAG- 330 (838)
Q Consensus 273 ~~~~~~~~~~~~~~~~~----~~-~---s~~~l~~~--~~~~~~~-----------~~~s~~v~~las~~~~~~V~s~s- 330 (838)
+.. .+........+++ .. . .....+.+ .....+. .-....+.++..+++ ..+++++
T Consensus 145 ~~~-~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~ 222 (1045)
T 1k32_A 145 NFV-PLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDI 222 (1045)
T ss_dssp EEE-ECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECT
T ss_pred CeE-EecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEec
Confidence 321 1211111111110 00 0 00000000 0000000 001234455555544 3444444
Q ss_pred CCcEEEEeccC-ccEEEEEecCCceEEeeecccCccccc-ccceeeEEEec-------CCC------------Ccceeee
Q 003217 331 FLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAM-EDEFKTKIVTS-------SKK------------DKAQSSF 389 (838)
Q Consensus 331 ~~tI~lWD~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~s~-------~~~------------~~~~~s~ 389 (838)
+++++||++.. +...+.+..+... ..+.++++....+ ..+..++++.. ... ......+
T Consensus 223 dg~~~l~~~~~~g~~~~~l~~~~~~-~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~ 301 (1045)
T 1k32_A 223 DGFGQIYSTDLDGKDLRKHTSFTDY-YPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAE 301 (1045)
T ss_dssp TSSCEEEEEETTSCSCEECCCCCSS-CEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEE
T ss_pred cCceEEEEEeCCCCcceEecCCCCc-ceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCccccccccccccccccee
Confidence 46788887653 3233444433321 1223333322111 00111112211 000 0123467
Q ss_pred eEe-ecCcceeeecCCcEEEEecc-C---ccccCCC-ceEEEEEcCCCc-EEEEECCCeEE-EEcCCCCeeeEeecCCcc
Q 003217 390 GFF-QRSRNAIMGAADAVRRVAAK-G---GFGDDNR-RTEALTTSIDGM-IWTGGANGLLL-QWDPNGNRLQDFQYLPFA 461 (838)
Q Consensus 390 ~~~-~~~~~~~~g~~~~v~~v~~~-g---~~~~~~~-~v~ala~S~dg~-l~Sgs~DgtIr-lWD~~g~~l~tl~~H~~~ 461 (838)
.++ +++..++.+....++.+... + .+..+.. .+..++++ ||. +++++.++.+. +||+.+.....+.+|...
T Consensus 302 ~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~ 380 (1045)
T 1k32_A 302 DFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGN 380 (1045)
T ss_dssp EEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCS
T ss_pred eecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccc
Confidence 788 88776666554444444332 2 1233445 78889999 886 78888888888 899965555566688888
Q ss_pred EEEEE--EcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCC----------CeeeeecC
Q 003217 462 VQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHG----------GIRGWNVT 526 (838)
Q Consensus 462 V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~Dg----------tIrlWdl~ 526 (838)
+.+++ +||++|++++.++.|++||++ +++...+.+|...|.+++ +||+++++++.++ +|++||+.
T Consensus 381 ~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 381 VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred eeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 88775 479999999999999999997 566666668998888876 5889998887654 89999987
Q ss_pred CC
Q 003217 527 SP 528 (838)
Q Consensus 527 s~ 528 (838)
..
T Consensus 461 ~g 462 (1045)
T 1k32_A 461 GR 462 (1045)
T ss_dssp TT
T ss_pred CC
Confidence 53
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.1e-16 Score=165.77 Aligned_cols=264 Identities=9% Similarity=0.028 Sum_probs=169.7
Q ss_pred cCCEEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC-CCcEEE
Q 003217 141 TEEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR-DGRIMC 217 (838)
Q Consensus 141 ~~~~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~-DGtIrv 217 (838)
+.+.+|+ +.++.|++||+++...... + ..+ ..++ +++++|+|+.|+.++. ++.|.+
T Consensus 8 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~-----------------~--~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~ 66 (331)
T 3u4y_A 8 TSNFGIVVEQHLRRISFFSTDTLEILNQ-----------------I--TLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQ 66 (331)
T ss_dssp CCCEEEEEEGGGTEEEEEETTTCCEEEE-----------------E--ECC-CCEE-EEEECSSSCEEEEEESTTCEEEE
T ss_pred CCCEEEEEecCCCeEEEEeCcccceeee-----------------E--Ecc-CCcc-eEEEcCCCCEEEEEeCCCCeEEE
Confidence 3456665 4578999999976543211 1 112 3455 9999999997777665 899999
Q ss_pred EECCCCccCCCCCcce-eEEeccccccEEEEEEecCCC-EEEeeCCC---cEEEEECCCcceeeecCCCceeeeEEEEee
Q 003217 218 WKMNARLLDSDDGFGE-VLSWQAHRGPVLSLCISSYGD-LWSGSEGG---GIKIWPWEAIEKALSLKPEERHTAALIVER 292 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~-~~~l~gH~~~V~slafs~dG~-L~SgS~Dg---tIrvWd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (838)
||+.++ +. ...+..|..++.+++|+|||+ |+++..++ +|++||+.+++....+..
T Consensus 67 ~d~~~~--------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~------------ 126 (331)
T 3u4y_A 67 IETQLE--------PPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI------------ 126 (331)
T ss_dssp EECSSS--------SCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC------------
T ss_pred EECCCC--------ceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC------------
Confidence 999987 34 556677777777799999998 66555553 899999976542211100
Q ss_pred ceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCc-EEEEeccCccEEEEEecCCceEEeeecccCcccccc
Q 003217 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLS-FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (838)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~t-I~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (838)
......+++++++..++.+. +.. |.+|++.....+.... .
T Consensus 127 ------------------~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--~----------------- 169 (331)
T 3u4y_A 127 ------------------PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG--Q----------------- 169 (331)
T ss_dssp ------------------CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE--E-----------------
T ss_pred ------------------CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC--C-----------------
Confidence 12345677788777555443 366 9999987532211100 0
Q ss_pred cceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEE-CCCeEEEEcC
Q 003217 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP 447 (838)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs-~DgtIrlWD~ 447 (838)
+ .. .....+..++++|||+ ++.++ .+++|++||+
T Consensus 170 ---~--~~---------------------------------------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~ 205 (331)
T 3u4y_A 170 ---E--FI---------------------------------------SGGTRPFNITFTPDGNFAFVANLIGNSIGILET 205 (331)
T ss_dssp ---E--EE---------------------------------------CSSSSEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred ---c--cc---------------------------------------cCCCCccceEECCCCCEEEEEeCCCCeEEEEEC
Confidence 0 00 0011235678999997 65544 6889999999
Q ss_pred -CCCe---eeEeecCCccEEEE--EEcCCEEEEEe-eCCeEEEEeCC-Ccc--ccccccc----ccCE-----EEEEeCC
Q 003217 448 -NGNR---LQDFQYLPFAVQCL--CTFGSQIWVGY-MNGIVQVLDLE-GNL--LGGWVAH----SSPV-----IKMAVGA 508 (838)
Q Consensus 448 -~g~~---l~tl~~H~~~V~sl--s~dG~~LasGs-~DgtIrlWD~~-g~~--i~~l~gH----~~~V-----~sla~dg 508 (838)
+++. +.++..+ ..+..+ ++||++|++++ .++.|.+||++ +++ +..+..+ ...+ .++.+|+
T Consensus 206 ~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 284 (331)
T 3u4y_A 206 QNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTE 284 (331)
T ss_dssp SSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTS
T ss_pred CCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCC
Confidence 6777 7777654 344444 55799887766 47899999987 554 3322222 2211 2445688
Q ss_pred CEEE-EEcCCCCeeeeecCC
Q 003217 509 GYIF-TLANHGGIRGWNVTS 527 (838)
Q Consensus 509 ~~l~-S~S~DgtIrlWdl~s 527 (838)
++++ +.+.+++|++||+..
T Consensus 285 ~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 285 TKLFISANISRELKVFTISG 304 (331)
T ss_dssp SEEEEEETTTTEEEEEETTS
T ss_pred CEEEEecCCCCcEEEEEecC
Confidence 8876 555677999999865
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-15 Score=182.93 Aligned_cols=291 Identities=9% Similarity=-0.031 Sum_probs=179.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CC-----cEEEEECCCCccCCCCCcceeEEecccc-----------------------
Q 003217 191 VSSVMCMVGDEASGVVWSGHR-DG-----RIMCWKMNARLLDSDDGFGEVLSWQAHR----------------------- 241 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~-DG-----tIrvWd~~~g~~~~~~~~~~~~~l~gH~----------------------- 241 (838)
...|.+++|+|||++|++++. || +|++||+.++ +....+..|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG--------QTRLLVDSKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC--------CEEEEECGGGTC--------------------C
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC--------ceeEccchhhcccccccccchhhhhhhhhhhcc
Confidence 447999999999999999998 88 9999999987 3444444443
Q ss_pred -ccEEEEEEecCCC-EEEeeCCCcEEEEECCCcc--eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEE
Q 003217 242 -GPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE--KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNL 317 (838)
Q Consensus 242 -~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~--~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~l 317 (838)
..|.+++|||||+ |++++. ++|++||+.++. ....+.. + ...+..+
T Consensus 108 ~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~-------------------~----------~~~~~~~ 157 (741)
T 2ecf_A 108 MTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTH-------------------G----------EGFATDA 157 (741)
T ss_dssp CEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCC-------------------S----------SSCEEEE
T ss_pred ccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEccc-------------------C----------Ccccccc
Confidence 3388999999998 677776 999999997651 1111111 1 2346678
Q ss_pred EEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCc-e---------------EEeeecccCcccccccc-----eeeEE
Q 003217 318 LSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQ-I---------------ENRVDMSLLPDFAMEDE-----FKTKI 376 (838)
Q Consensus 318 as~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~-~---------------~~~~~~s~~~~~~~~~~-----~~~~~ 376 (838)
++++++..|+.++++.|.+||+.+++.......+.. + ...+.++++....+... .....
T Consensus 158 ~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~ 237 (741)
T 2ecf_A 158 KLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQK 237 (741)
T ss_dssp EECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEE
T ss_pred cCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEe
Confidence 888999988888888999999999887654433221 1 01223333322211000 00000
Q ss_pred EecCCCC-cceeeeeEeecCcceeeecCC---cEEEEec-c-Cccc------cCCCceEEEEEcCCCc-EEEEEC-----
Q 003217 377 VTSSKKD-KAQSSFGFFQRSRNAIMGAAD---AVRRVAA-K-GGFG------DDNRRTEALTTSIDGM-IWTGGA----- 438 (838)
Q Consensus 377 ~s~~~~~-~~~~s~~~~~~~~~~~~g~~~---~v~~v~~-~-g~~~------~~~~~v~ala~S~dg~-l~Sgs~----- 438 (838)
....... .....+.+.. .|... .++.+.. . +... .+...+..+++ |||+ |++++.
T Consensus 238 ~~~~~p~~~~~~~~~~~~------~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~ 310 (741)
T 2ecf_A 238 RYEVYADRTDVIEQRYPA------AGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQK 310 (741)
T ss_dssp EEEECSSCEEEEEEECCB------TTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSS
T ss_pred cCCCCCCcccceEeecCC------CCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCC
Confidence 0000000 0000000000 01111 1111111 1 2111 24456788999 9998 665543
Q ss_pred CCeEEEEcC-CCCeeeEeecCCc----cEE--EEEEcCCEEEEEeeCCeEEEEe--CCCcccccccccccCEEEE---Ee
Q 003217 439 NGLLLQWDP-NGNRLQDFQYLPF----AVQ--CLCTFGSQIWVGYMNGIVQVLD--LEGNLLGGWVAHSSPVIKM---AV 506 (838)
Q Consensus 439 DgtIrlWD~-~g~~l~tl~~H~~----~V~--sls~dG~~LasGs~DgtIrlWD--~~g~~i~~l~gH~~~V~sl---a~ 506 (838)
+..|++||+ +|++...+..|.. .+. .+++||+.+++++.||+++||. ++++ ...+..|...|.++ .+
T Consensus 311 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~ 389 (741)
T 2ecf_A 311 KLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE 389 (741)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET
T ss_pred eEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC
Confidence 568999999 6888777766543 223 3456899999999999777776 4567 88888998888765 35
Q ss_pred CCCEEE-EEcCCC--CeeeeecCC
Q 003217 507 GAGYIF-TLANHG--GIRGWNVTS 527 (838)
Q Consensus 507 dg~~l~-S~S~Dg--tIrlWdl~s 527 (838)
|++.++ +++.|+ ++++|++..
T Consensus 390 dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 390 KAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp TTTEEEEEECSSCTTCBEEEEEET
T ss_pred CCCEEEEEEeCCCCceEEEEEEEc
Confidence 787765 566666 899999864
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.70 E-value=8e-16 Score=173.85 Aligned_cols=264 Identities=9% Similarity=-0.028 Sum_probs=175.6
Q ss_pred CeEEEEEcCCC-CEEEEEe----CCC----cEEEEEC--CCCccCCCCCccee--EEeccccccEEEEEEec--------
Q 003217 193 SVMCMVGDEAS-GVVWSGH----RDG----RIMCWKM--NARLLDSDDGFGEV--LSWQAHRGPVLSLCISS-------- 251 (838)
Q Consensus 193 ~V~~la~s~dg-~~LaSGs----~DG----tIrvWd~--~~g~~~~~~~~~~~--~~l~gH~~~V~slafs~-------- 251 (838)
.|....|++.| ..+++|+ .|| +|++||+ .++ +++ ..+.+|...|..+++++
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 135 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG--------TVLAQNSYKVNKQWLRYAGHTASDEVFEKL 135 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTT--------CEEEEEEEEECGGGHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCC--------CEEeeeEEEcChhHHHHHHHHHHHHHHHHH
Confidence 45666777766 5676887 568 9999999 876 444 45889999998888875
Q ss_pred -------CCCEEEeeCC------CcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEE
Q 003217 252 -------YGDLWSGSEG------GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL 318 (838)
Q Consensus 252 -------dG~L~SgS~D------gtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~la 318 (838)
+++++.++.+ ++|++||+++.. ...+. ++ ...+.+++
T Consensus 136 ~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~-------------------~~----------~~~v~~~~ 185 (415)
T 2hqs_A 136 TGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVH-------------------RS----------PQPLMSPA 185 (415)
T ss_dssp HSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEE-------------------EE----------SSCEEEEE
T ss_pred cCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEe-------------------CC----------CCcceeeE
Confidence 4457665554 799999996422 11110 01 34577888
Q ss_pred EcCCCCEEEEeCC----CcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeec
Q 003217 319 SDHSRAKVWSAGF----LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR 394 (838)
Q Consensus 319 s~~~~~~V~s~s~----~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~ 394 (838)
.++++..|+.++. .+|++||+.++++.. +..+......+.++++....
T Consensus 186 ~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~~~~~~~~~~~spdg~~l--------------------------- 237 (415)
T 2hqs_A 186 WSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKL--------------------------- 237 (415)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSSCEEEEEECTTSSEE---------------------------
T ss_pred EcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eecCCCcccCEEEcCCCCEE---------------------------
Confidence 8888888887764 289999999998854 43333333334444332211
Q ss_pred CcceeeecCCc---EEEEec-cC---ccccCCCceEEEEEcCCCc-EEEEEC-CC--eEEEEcCCCCeeeEeecCCccEE
Q 003217 395 SRNAIMGAADA---VRRVAA-KG---GFGDDNRRTEALTTSIDGM-IWTGGA-NG--LLLQWDPNGNRLQDFQYLPFAVQ 463 (838)
Q Consensus 395 ~~~~~~g~~~~---v~~v~~-~g---~~~~~~~~v~ala~S~dg~-l~Sgs~-Dg--tIrlWD~~g~~l~tl~~H~~~V~ 463 (838)
++++..++ ++.+.. .+ .+..+...+.+++|+|||+ |++++. ++ .|.+||+.+.....+..|...+.
T Consensus 238 ---a~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~ 314 (415)
T 2hqs_A 238 ---AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ 314 (415)
T ss_dssp ---EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEE
T ss_pred ---EEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCccc
Confidence 11222111 222221 11 2344556788999999998 777775 44 67888985444556667777887
Q ss_pred EEE--EcCCEEEEEeeC---CeEEEEeCCCcccccccccccCEEEEE--eCCCEEEEEcCCC---CeeeeecC
Q 003217 464 CLC--TFGSQIWVGYMN---GIVQVLDLEGNLLGGWVAHSSPVIKMA--VGAGYIFTLANHG---GIRGWNVT 526 (838)
Q Consensus 464 sls--~dG~~LasGs~D---gtIrlWD~~g~~i~~l~gH~~~V~sla--~dg~~l~S~S~Dg---tIrlWdl~ 526 (838)
+++ +||++|++++.+ ..|++||+++.....+..|. .+.+++ +||++|++++.|+ .|++||+.
T Consensus 315 ~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 315 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp EEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred CeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 765 589999988874 68999999854445666665 777776 4788999888877 68999975
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-15 Score=158.70 Aligned_cols=243 Identities=10% Similarity=0.017 Sum_probs=166.4
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CccC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA-RLLD 226 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~-g~~~ 226 (838)
+.|+.|++||+.+..... +. .+ ...|.+++|+|+|++|++++ ++.|++||+.+ +
T Consensus 19 ~~~~~i~~~d~~~~~~~~------------------~~--~~-~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~--- 73 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRV------------------VW--QT-PELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP--- 73 (297)
T ss_dssp CCCEEEEEEETTTTEEEE------------------EE--EE-SSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC---
T ss_pred CcceeEEEEeCCCCceee------------------ec--cC-CcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC---
Confidence 357899999987643211 11 12 66899999999999999987 78999999988 6
Q ss_pred CCCCcceeEEeccc-cccEEEEEEecCCC-EEEee--CCCcEEEEECCCcce-eeecCCCceeeeEEEEeeceeecccce
Q 003217 227 SDDGFGEVLSWQAH-RGPVLSLCISSYGD-LWSGS--EGGGIKIWPWEAIEK-ALSLKPEERHTAALIVERSYIDLRSHL 301 (838)
Q Consensus 227 ~~~~~~~~~~l~gH-~~~V~slafs~dG~-L~SgS--~DgtIrvWd~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l~~~~ 301 (838)
+......+| ...|.+++|+|||+ |++++ .++.++||.++.... ...+..
T Consensus 74 -----~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------------------- 127 (297)
T 2ojh_A 74 -----SPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTK--------------------- 127 (297)
T ss_dssp -----SCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCS---------------------
T ss_pred -----CceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeec---------------------
Confidence 444455566 47899999999998 67777 456777777643111 111100
Q ss_pred eccceeeeecCCeEEEEEcCCCCEEE-EeC-CCcEEEEecc--CccEEEEEecCCceEEeeecccCcccccccceeeEEE
Q 003217 302 SVNGFSSILTSDIKNLLSDHSRAKVW-SAG-FLSFALWDAR--TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIV 377 (838)
Q Consensus 302 ~~~~~~~~~s~~v~~las~~~~~~V~-s~s-~~tI~lWD~~--tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 377 (838)
...+..++.++++..++ ++. ++.++||++. +++. ..
T Consensus 128 ---------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~------------------------------ 167 (297)
T 2ojh_A 128 ---------NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TR------------------------------ 167 (297)
T ss_dssp ---------SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EE------------------------------
T ss_pred ---------CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eE------------------------------
Confidence 11245566777777665 443 5677888753 2221 00
Q ss_pred ecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEE-CCCeEEEEcC--CCCeee
Q 003217 378 TSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP--NGNRLQ 453 (838)
Q Consensus 378 s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs-~DgtIrlWD~--~g~~l~ 453 (838)
+..+...+..++++|+|. ++.++ .|+.+++|++ .+..+.
T Consensus 168 -------------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~ 210 (297)
T 2ojh_A 168 -------------------------------------LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE 210 (297)
T ss_dssp -------------------------------------CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE
T ss_pred -------------------------------------cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE
Confidence 011122345678899987 56555 5889999987 567788
Q ss_pred EeecCCccEEEEEE--cCCEEEEEeeC-----------CeEEEEeCCC-cc--cccccccccCEEEEE--eCCCEEEEEc
Q 003217 454 DFQYLPFAVQCLCT--FGSQIWVGYMN-----------GIVQVLDLEG-NL--LGGWVAHSSPVIKMA--VGAGYIFTLA 515 (838)
Q Consensus 454 tl~~H~~~V~sls~--dG~~LasGs~D-----------gtIrlWD~~g-~~--i~~l~gH~~~V~sla--~dg~~l~S~S 515 (838)
.+..|...+.++++ +|++|++++.+ +.|.+||+++ +. +..+.+|...|.+++ +++++|++++
T Consensus 211 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 290 (297)
T 2ojh_A 211 RITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVR 290 (297)
T ss_dssp ECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEE
T ss_pred EEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEE
Confidence 88888888887754 78999888875 5799999974 43 445558888888776 4788888877
Q ss_pred CCC
Q 003217 516 NHG 518 (838)
Q Consensus 516 ~Dg 518 (838)
.|.
T Consensus 291 ~~~ 293 (297)
T 2ojh_A 291 YFP 293 (297)
T ss_dssp ECC
T ss_pred ecc
Confidence 664
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-14 Score=153.89 Aligned_cols=257 Identities=9% Similarity=0.061 Sum_probs=169.6
Q ss_pred ecCCEEEEec--------CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEE-EEe
Q 003217 140 CTEEQLWAGG--------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW-SGH 210 (838)
Q Consensus 140 ~~~~~l~~g~--------d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~La-SGs 210 (838)
.+++.+|++. ++.|.+||..+...... + . . ...+.+++++|+|+.++ ++.
T Consensus 50 ~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-----------------~-~-~--~~~~~~~~~s~dg~~l~v~~~ 108 (353)
T 3vgz_A 50 QQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-----------------I-H-N--DLKPFGATINNTTQTLWFGNT 108 (353)
T ss_dssp TTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-----------------E-E-E--SSCCCSEEEETTTTEEEEEET
T ss_pred CCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-----------------E-e-c--CCCcceEEECCCCCEEEEEec
Confidence 3456888754 66899999876543221 1 1 1 23467789999999555 455
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccc---------cEEEEEEecCCC-EEEee--CCCcEEEEECCCcceeeec
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---------PVLSLCISSYGD-LWSGS--EGGGIKIWPWEAIEKALSL 278 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~---------~V~slafs~dG~-L~SgS--~DgtIrvWd~~~~~~~~~~ 278 (838)
.++.|.+||..++ +....+..|.. .+.+++|+|+|+ |+.++ .++.|.+||..+++....+
T Consensus 109 ~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~ 180 (353)
T 3vgz_A 109 VNSAVTAIDAKTG--------EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI 180 (353)
T ss_dssp TTTEEEEEETTTC--------CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCC--------eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe
Confidence 6799999999987 44555554432 278999999998 65544 5889999999765432221
Q ss_pred CCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEe
Q 003217 279 KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENR 357 (838)
Q Consensus 279 ~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~ 357 (838)
... ......++.++++..++.+. ++.|.+||+.+++.+..+.....
T Consensus 181 ~~~-----------------------------~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~---- 227 (353)
T 3vgz_A 181 QNT-----------------------------GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDD---- 227 (353)
T ss_dssp CCC-----------------------------CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCS----
T ss_pred cCC-----------------------------CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC----
Confidence 100 11133455667777776665 56899999999887655432100
Q ss_pred eecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEE
Q 003217 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG 436 (838)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sg 436 (838)
.+...+..++++|||. ++.+
T Consensus 228 -----------------------------------------------------------~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 228 -----------------------------------------------------------GKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp -----------------------------------------------------------SSCCCEEEEEEETTTTEEEEE
T ss_pred -----------------------------------------------------------CCCcccceEEECCCCCEEEEE
Confidence 0112234577888887 6655
Q ss_pred EC-CCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEe-eCCeEEEEeCC-CcccccccccccCEEEEEe--CCCE
Q 003217 437 GA-NGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGY 510 (838)
Q Consensus 437 s~-DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs-~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~ 510 (838)
+. ++.|.+||. +++.+..+..+...-.+++++|++++++. .+++|.+||++ ++.+..+..+. .+.++++ ||++
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~ 327 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKT 327 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCE
T ss_pred eCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCE
Confidence 54 589999999 78888887754443335567899777766 58999999987 66666665543 5677764 7787
Q ss_pred EEEEcCCC
Q 003217 511 IFTLANHG 518 (838)
Q Consensus 511 l~S~S~Dg 518 (838)
++.+..++
T Consensus 328 l~v~~~~~ 335 (353)
T 3vgz_A 328 LYVSVKQK 335 (353)
T ss_dssp EEEEEECC
T ss_pred EEEEEccc
Confidence 76655554
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=8.9e-15 Score=157.71 Aligned_cols=268 Identities=12% Similarity=0.167 Sum_probs=164.5
Q ss_pred EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEC
Q 003217 144 QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD-GRIMCWKM 220 (838)
Q Consensus 144 ~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~D-GtIrvWd~ 220 (838)
.+|+ +.|+.|++||+....... .... ..+...+.+++|+|+|++|++++.+ +.|++|++
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~-----------------~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~ 67 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALT-----------------LTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 67 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEE-----------------EEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEEEeCCCCCeEEEEEECCCCcEE-----------------Eeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEe
Confidence 3454 358999999985311000 0111 1115578899999999999999887 99999999
Q ss_pred C--CCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEe-eCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceee
Q 003217 221 N--ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSG-SEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (838)
Q Consensus 221 ~--~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~Sg-S~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 296 (838)
. ++. .+....+..+. .+.+++|+|+|+ |+++ ..++.|++||+..+. .... ...
T Consensus 68 ~~~~~~------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-~~~~------~~~--------- 124 (343)
T 1ri6_A 68 APDDGA------LTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-PVGV------VDV--------- 124 (343)
T ss_dssp CTTTCC------EEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE-EEEE------EEE---------
T ss_pred cCCCCc------eeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc-cccc------ccc---------
Confidence 7 431 12333444444 788999999998 6554 458999999984211 0000 000
Q ss_pred cccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccC-ccEEEEEecCCceEEeeecccCccccccccee
Q 003217 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (838)
Q Consensus 297 l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (838)
+.. ...+..+++++++..+++++ ++.|++||+.+ +++...... .
T Consensus 125 ~~~-----------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~-------------------- 171 (343)
T 1ri6_A 125 VEG-----------LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA--E-------------------- 171 (343)
T ss_dssp ECC-----------CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--E--------------------
T ss_pred ccC-----------CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc--c--------------------
Confidence 000 12344566777777666654 57899999987 554221100 0
Q ss_pred eEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEE-CCCeEEEEcCC---
Q 003217 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDPN--- 448 (838)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs-~DgtIrlWD~~--- 448 (838)
... .....+..++++|+|. +++++ .++.|++||+.
T Consensus 172 ---~~~-------------------------------------~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~ 211 (343)
T 1ri6_A 172 ---VTT-------------------------------------VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH 211 (343)
T ss_dssp ---EEC-------------------------------------STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT
T ss_pred ---ccc-------------------------------------CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence 000 0011234678899997 65554 78999999983
Q ss_pred CCe--eeEee----cC--CccEEEEE--EcCCEEEEEe-eCCeEEEEeCC--C---cccccccccccCEEEEE--eCCCE
Q 003217 449 GNR--LQDFQ----YL--PFAVQCLC--TFGSQIWVGY-MNGIVQVLDLE--G---NLLGGWVAHSSPVIKMA--VGAGY 510 (838)
Q Consensus 449 g~~--l~tl~----~H--~~~V~sls--~dG~~LasGs-~DgtIrlWD~~--g---~~i~~l~gH~~~V~sla--~dg~~ 510 (838)
|+. ++.+. ++ ...+.+++ ++|++|+++. .++.|++||+. + +.+..+..+.. +.+++ +++++
T Consensus 212 g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~ 290 (343)
T 1ri6_A 212 GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKY 290 (343)
T ss_dssp SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSE
T ss_pred CcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCE
Confidence 332 23332 11 23454554 4688887544 79999999986 2 23444544444 66666 47888
Q ss_pred EEEEc-CCCCeeeeecC
Q 003217 511 IFTLA-NHGGIRGWNVT 526 (838)
Q Consensus 511 l~S~S-~DgtIrlWdl~ 526 (838)
++.++ .|+.|++|++.
T Consensus 291 l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 291 LIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEECTTTCEEEEEEEE
T ss_pred EEEecCCCCeEEEEEEc
Confidence 88776 68999999764
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-15 Score=182.09 Aligned_cols=315 Identities=9% Similarity=-0.011 Sum_probs=175.4
Q ss_pred CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCC---CCeEEEEEcCCCCEEEEEeCC------
Q 003217 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGV---SSVMCMVGDEASGVVWSGHRD------ 212 (838)
Q Consensus 142 ~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~---~~V~~la~s~dg~~LaSGs~D------ 212 (838)
+..++.+.|++|++||+++...... + . .+ . ..|.+++|||||++|++++.|
T Consensus 28 g~~~~~~~dg~i~~~d~~~g~~~~~-----------------~-~-~~-~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~ 87 (723)
T 1xfd_A 28 TEFIYREQKGTVRLWNVETNTSTVL-----------------I-E-GK-KIESLRAIRYEISPDREYALFSYNVEPIYQH 87 (723)
T ss_dssp SCBCCCCSSSCEEEBCGGGCCCEEE-----------------E-C-TT-TTTTTTCSEEEECTTSSEEEEEESCCCCSSS
T ss_pred CcEEEEeCCCCEEEEECCCCcEEEE-----------------e-c-cc-cccccccceEEECCCCCEEEEEecCccceee
Confidence 3444446788999999976543211 0 0 11 2 248999999999999999875
Q ss_pred ---CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEE
Q 003217 213 ---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (838)
Q Consensus 213 ---GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~ 288 (838)
+.|.+||+.++. .+.+....+|...|.+++|||||+ |++++. +.|++||+.+++.............
T Consensus 88 ~~~~~i~~~d~~~~~------~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~-- 158 (723)
T 1xfd_A 88 SYTGYYVLSKIPHGD------PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVI-- 158 (723)
T ss_dssp CCCSEEEEEESSSCC------CEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTE--
T ss_pred cceeeEEEEECCCCc------eEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCce--
Confidence 678899999862 011222345666799999999997 777776 7999999987543211111000000
Q ss_pred EEeeceeecccceeccceee-e----ecCCeEEEEEcCCCCEEEEeCC--CcEEEEeccCccEEEEEecCCceEEeeecc
Q 003217 289 IVERSYIDLRSHLSVNGFSS-I----LTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMS 361 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~-~----~s~~v~~las~~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s 361 (838)
.+++.. + ....+..++.++++..|+.++. ..+.+|++..... ..... ...+.++
T Consensus 159 --------------~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~ 219 (723)
T 1xfd_A 159 --------------YNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG----SIYPT-VKPYHYP 219 (723)
T ss_dssp --------------EEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS----SSSCC-CEEEECC
T ss_pred --------------ECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC----cCCCc-ceeccCC
Confidence 000000 0 0012356778888888877653 3577777642110 00000 0111111
Q ss_pred cCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEE-EEEC--
Q 003217 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIW-TGGA-- 438 (838)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~-Sgs~-- 438 (838)
..... .....++++...... ....+.....+..+...+..+++||||+++ +.+.
T Consensus 220 ~~G~~--~~~~~l~~~d~~~~~---------------------~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~ 276 (723)
T 1xfd_A 220 KAGSE--NPSISLHVIGLNGPT---------------------HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA 276 (723)
T ss_dssp BTTSC--CCEEEEEEEESSSSC---------------------CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT
T ss_pred CCCCC--CCeeEEEEEECCCCc---------------------eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC
Confidence 11110 001111111111000 001110000112234567789999999854 4432
Q ss_pred --CCeEEEEcC-CCCeeeEeec-CCccEE------EEEEcCCEEEEE--eeCC------eEEEEe-CCCcc---cccccc
Q 003217 439 --NGLLLQWDP-NGNRLQDFQY-LPFAVQ------CLCTFGSQIWVG--YMNG------IVQVLD-LEGNL---LGGWVA 496 (838)
Q Consensus 439 --DgtIrlWD~-~g~~l~tl~~-H~~~V~------sls~dG~~LasG--s~Dg------tIrlWD-~~g~~---i~~l~g 496 (838)
+..|++||+ +|++...+.. |..++. .+++||++|+.. ..++ .|.+|| ..+.. ...+..
T Consensus 277 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 356 (723)
T 1xfd_A 277 QNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS 356 (723)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC
T ss_pred CCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec
Confidence 357999999 6787766654 334332 346689977654 4566 577888 45544 666765
Q ss_pred cccCEEE---EEeCCCEEEEEcCC---CCeeeeecCC
Q 003217 497 HSSPVIK---MAVGAGYIFTLANH---GGIRGWNVTS 527 (838)
Q Consensus 497 H~~~V~s---la~dg~~l~S~S~D---gtIrlWdl~s 527 (838)
+...+.. +.+||+.|+..+.+ +++++|++..
T Consensus 357 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 357 GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 4455543 34689988765554 8899999864
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-14 Score=173.46 Aligned_cols=274 Identities=10% Similarity=0.037 Sum_probs=176.7
Q ss_pred eEEEEecC-CEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 003217 135 LRTIVCTE-EQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (838)
Q Consensus 135 ~~~l~~~~-~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DG 213 (838)
+..++.+. +.+..+.++.|++||+.+..... + ..+...+.+++|+|||+.|+++ .|+
T Consensus 84 v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~------------------l---~~~~~~~~~~~~SpdG~~la~~-~~~ 141 (706)
T 2z3z_A 84 SFRTLDAGRGLVVLFTQGGLVGFDMLARKVTY------------------L---FDTNEETASLDFSPVGDRVAYV-RNH 141 (706)
T ss_dssp CEEEEETTTTEEEEEETTEEEEEETTTTEEEE------------------E---ECCTTCCTTCEECTTSSEEEEE-ETT
T ss_pred ceeEEECCCCeEEEEECCEEEEEECCCCceEE------------------c---cCCcccccCCcCCCCCCEEEEE-ECC
Confidence 44555543 46666778999999997643211 1 1114467789999999999995 789
Q ss_pred cEEEEECCC-----CccCCCCCcceeEEecccccc--------------EEEEEEecCCC-EEEee--------------
Q 003217 214 RIMCWKMNA-----RLLDSDDGFGEVLSWQAHRGP--------------VLSLCISSYGD-LWSGS-------------- 259 (838)
Q Consensus 214 tIrvWd~~~-----g~~~~~~~~~~~~~l~gH~~~--------------V~slafs~dG~-L~SgS-------------- 259 (838)
.|++|++.+ + +.......+... +.+++|||||+ |++++
T Consensus 142 ~i~v~~~~~~~~~~g--------~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~ 213 (706)
T 2z3z_A 142 NLYIARGGKLGEGMS--------RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDY 213 (706)
T ss_dssp EEEEEECBCTTSCCC--------CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEEC
T ss_pred eEEEEecCcccccCC--------CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeecc
Confidence 999999987 6 333333333333 48999999998 77776
Q ss_pred -------------------CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEc
Q 003217 260 -------------------EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD 320 (838)
Q Consensus 260 -------------------~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~ 320 (838)
.+..|++||+++++........ .+ ...+..++.+
T Consensus 214 ~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~-----------------~~----------~~~~~~~~~s 266 (706)
T 2z3z_A 214 HPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE-----------------PK----------EKFLTNLSWS 266 (706)
T ss_dssp CSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS-----------------CT----------TCEEEEEEEC
T ss_pred CCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC-----------------CC----------ceeEeeEEEE
Confidence 4467999998765421111000 00 1235667778
Q ss_pred CCCCEEEEeC-CC-----cEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeec
Q 003217 321 HSRAKVWSAG-FL-----SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR 394 (838)
Q Consensus 321 ~~~~~V~s~s-~~-----tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~ 394 (838)
+++..|+.++ +. .|.+||+.+++.++.+.... .. .
T Consensus 267 pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~--------------------------~~---~---------- 307 (706)
T 2z3z_A 267 PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET--------------------------DK---H---------- 307 (706)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE--------------------------CS---S----------
T ss_pred CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc--------------------------CC---C----------
Confidence 8887776643 32 79999999984333321100 00 0
Q ss_pred CcceeeecCCcEEEEeccCccccCCCceEEEEEcC--CCc-EEEEECCCeEEEEcC--CCCeeeEeecCCccEEE-E--E
Q 003217 395 SRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI--DGM-IWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQC-L--C 466 (838)
Q Consensus 395 ~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~--dg~-l~Sgs~DgtIrlWD~--~g~~l~tl~~H~~~V~s-l--s 466 (838)
. ...+..++++| ||+ +++++.|++++||+. +++.++.+..|...|.+ + +
T Consensus 308 --------------------~---~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~s 364 (706)
T 2z3z_A 308 --------------------Y---VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFD 364 (706)
T ss_dssp --------------------C---CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEEC
T ss_pred --------------------e---ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEc
Confidence 0 00012356888 887 677778899999976 57888899888887865 4 4
Q ss_pred EcCCEEEEEee-CC----eEEEEeCCCcccccccccccCEEEEE--eCCCEEEEEcC-C---CCeeeeecCCC
Q 003217 467 TFGSQIWVGYM-NG----IVQVLDLEGNLLGGWVAHSSPVIKMA--VGAGYIFTLAN-H---GGIRGWNVTSP 528 (838)
Q Consensus 467 ~dG~~LasGs~-Dg----tIrlWD~~g~~i~~l~gH~~~V~sla--~dg~~l~S~S~-D---gtIrlWdl~s~ 528 (838)
++|++|+.++. ++ .|..||+++.....+. |...+.+++ +||++++..+. + +.|.+||+...
T Consensus 365 pdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 365 PKGTRLYFESTEASPLERHFYCIDIKGGKTKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp TTSSEEEEEESSSCTTCBEEEEEETTCCCCEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred CCCCEEEEEecCCCCceEEEEEEEcCCCCceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 57887776654 43 6777787654344443 677788876 47888775533 3 45999998654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-15 Score=178.38 Aligned_cols=224 Identities=9% Similarity=-0.036 Sum_probs=152.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCccCCCCCcceeEEecccc-ccEEEEEEecCCC-EEEeeC---CCcE
Q 003217 191 VSSVMCMVGDEASGVVWSGHR-DGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LWSGSE---GGGI 264 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~-DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~-L~SgS~---DgtI 264 (838)
..+|++++|+|||++||+++. ||+++||+++++ ....+..|. ..|.+++|||| + +++++. +...
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g---------~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~ 90 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG---------ETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQH 90 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---------EEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCC---------CcEeeecccccccccccCCCC-eEEEEeccCCCCcce
Confidence 568999999999999999887 999999999765 344555555 68999999999 7 456664 5667
Q ss_pred EEEECCC--cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC--EEEEeCCCcEEEEecc
Q 003217 265 KIWPWEA--IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA--KVWSAGFLSFALWDAR 340 (838)
Q Consensus 265 rvWd~~~--~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~--~V~s~s~~tI~lWD~~ 340 (838)
+||.+.. ......+.... .....+.++++. .+++++.+.+.+||+.
T Consensus 91 ~l~~~~~~~~g~~~~l~~~~------------------------------~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~ 140 (582)
T 3o4h_A 91 ALFKVNTSRPGEEQRLEAVK------------------------------PMRILSGVDTGEAVVFTGATEDRVALYALD 140 (582)
T ss_dssp EEEEEETTSTTCCEECTTSC------------------------------SBEEEEEEECSSCEEEEEECSSCEEEEEEE
T ss_pred EEEEEeccCCCccccccCCC------------------------------CceeeeeCCCCCeEEEEecCCCCceEEEcc
Confidence 7876643 11111111100 111222333332 3344455566699998
Q ss_pred CccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCC
Q 003217 341 TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (838)
Q Consensus 341 tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~ 420 (838)
++++......+ .
T Consensus 141 ~g~~~~l~~~~--------------------------------------------------------------------~ 152 (582)
T 3o4h_A 141 GGGLRELARLP--------------------------------------------------------------------G 152 (582)
T ss_dssp TTEEEEEEEES--------------------------------------------------------------------S
T ss_pred CCcEEEeecCC--------------------------------------------------------------------C
Confidence 88753322100 0
Q ss_pred ceEEEEEcCCCc-EEEEECC----CeEEEEcCCCCeeeEeecCCccEEEEE--EcCCEEEEEeeCC--eEEEEeCCC-cc
Q 003217 421 RTEALTTSIDGM-IWTGGAN----GLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNG--IVQVLDLEG-NL 490 (838)
Q Consensus 421 ~v~ala~S~dg~-l~Sgs~D----gtIrlWD~~g~~l~tl~~H~~~V~sls--~dG~~LasGs~Dg--tIrlWD~~g-~~ 490 (838)
.++++||||+ |++++.| ++|++||+++..++.+..|...+.+++ +||++|+++..++ .|++||+++ ++
T Consensus 153 --~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~ 230 (582)
T 3o4h_A 153 --FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV 230 (582)
T ss_dssp --CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE
T ss_pred --ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE
Confidence 2456788887 5656666 689999995434457788888888764 5899999877888 899999984 44
Q ss_pred cccccccccCEEE----------EEeCCCEEEEEcCCCCeeeeec
Q 003217 491 LGGWVAHSSPVIK----------MAVGAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 491 i~~l~gH~~~V~s----------la~dg~~l~S~S~DgtIrlWdl 525 (838)
. .+.+|...|.+ ..+||..+++++.|+++++|++
T Consensus 231 ~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 231 E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 4 77777765543 3357878889999999999997
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-14 Score=180.68 Aligned_cols=299 Identities=12% Similarity=-0.014 Sum_probs=186.6
Q ss_pred EEEEEcCCCCEEEEEeCC----C--cEEEEECCCCccCC--CCC------------------------------------
Q 003217 195 MCMVGDEASGVVWSGHRD----G--RIMCWKMNARLLDS--DDG------------------------------------ 230 (838)
Q Consensus 195 ~~la~s~dg~~LaSGs~D----G--tIrvWd~~~g~~~~--~~~------------------------------------ 230 (838)
.+++|+|||+++++++.| + .|.+|++.++.... ...
T Consensus 110 ~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~ 189 (1045)
T 1k32_A 110 DVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWI 189 (1045)
T ss_dssp EEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEE
T ss_pred ccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEE
Confidence 899999999999999866 3 57777776652100 000
Q ss_pred ---cceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcc-eeeecCCCceeeeEEEEeeceeecccceeccc
Q 003217 231 ---FGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE-KALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (838)
Q Consensus 231 ---~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~-~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 305 (838)
-.....+.+|.+.|.+++|+++ . +++++.|++++||.+.... ....+.. +
T Consensus 190 ~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~-------------------~----- 244 (1045)
T 1k32_A 190 EVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTS-------------------F----- 244 (1045)
T ss_dssp EEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCC-------------------C-----
T ss_pred ECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecC-------------------C-----
Confidence 0112334678888999999987 5 4677888999999864311 1111110 1
Q ss_pred eeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCC-----------ceEEeeecc-cCcccccc-cce
Q 003217 306 FSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDG-----------QIENRVDMS-LLPDFAME-DEF 372 (838)
Q Consensus 306 ~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~-----------~~~~~~~~s-~~~~~~~~-~~~ 372 (838)
..+...++++++..|+.+.++.|.+||+.++++. .+..+. .....+.++ ++....+. ...
T Consensus 245 ------~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~ 317 (1045)
T 1k32_A 245 ------TDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRG 317 (1045)
T ss_dssp ------CSSCEEEEEESSSCEEEEETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETT
T ss_pred ------CCcceeeEcCCCCEEEEEeCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcC
Confidence 1122335556777777777889999999665543 554321 011233444 43221110 001
Q ss_pred eeEEEecCC--------CCc-ceeeeeEeecCcceeeecCCc-EE-EEecc-C---ccccCCCceEEEEEcCCCc-EEEE
Q 003217 373 KTKIVTSSK--------KDK-AQSSFGFFQRSRNAIMGAADA-VR-RVAAK-G---GFGDDNRRTEALTTSIDGM-IWTG 436 (838)
Q Consensus 373 ~~~~~s~~~--------~~~-~~~s~~~~~~~~~~~~g~~~~-v~-~v~~~-g---~~~~~~~~v~ala~S~dg~-l~Sg 436 (838)
.++++.... ... ....+.|+ ++..++....+. ++ .+... + .+..+...+..+++||||+ |+++
T Consensus 318 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~ 396 (1045)
T 1k32_A 318 QAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVA 396 (1045)
T ss_dssp EEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEE
T ss_pred EEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEE
Confidence 111211110 011 22233444 443333333332 33 22221 1 2334556788999999998 7889
Q ss_pred ECCCeEEEEcC-CCCeeeEeecCCccEEEEE--EcCCEEEEEeeCC----------eEEEEeCCCcccccccccccCEEE
Q 003217 437 GANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNG----------IVQVLDLEGNLLGGWVAHSSPVIK 503 (838)
Q Consensus 437 s~DgtIrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~LasGs~Dg----------tIrlWD~~g~~i~~l~gH~~~V~s 503 (838)
+.+++|++||+ +|++...+.+|...|.+++ +||++|++++.++ .|++||+++..+..+..|...+.+
T Consensus 397 ~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~ 476 (1045)
T 1k32_A 397 NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYA 476 (1045)
T ss_dssp ETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEE
T ss_pred CCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCC
Confidence 99999999999 6787777778888887664 5899998887654 999999985447788889888888
Q ss_pred EE--eCCCEEEEEcCCCCeeeeecC
Q 003217 504 MA--VGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 504 la--~dg~~l~S~S~DgtIrlWdl~ 526 (838)
++ +||++|++++.++..++|+..
T Consensus 477 ~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 477 PAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EEECTTSCEEEEEESCCCCCEECSS
T ss_pred ceEcCCCCEEEEEecccCCcCcchh
Confidence 76 488999999999999988754
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-14 Score=153.50 Aligned_cols=279 Identities=9% Similarity=0.034 Sum_probs=157.0
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCC-CeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCcc
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVS-SVMCMVGDEASGVV-WSGHRDGRIMCWKMNARLL 225 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~-~V~~la~s~dg~~L-aSGs~DGtIrvWd~~~g~~ 225 (838)
+.++.|++||+.+...... + ...+.. .+.+++++|+|+.| ++++.++.|.+||+.++
T Consensus 8 ~~~~~v~~~d~~~~~~~~~-----------------~--~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-- 66 (337)
T 1pby_B 8 ARPDKLVVIDTEKMAVDKV-----------------I--TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-- 66 (337)
T ss_dssp ETTTEEEEEETTTTEEEEE-----------------E--ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC--
T ss_pred CCCCeEEEEECCCCcEEEE-----------------E--EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC--
Confidence 5689999999976543211 0 011011 47789999999766 55667889999999886
Q ss_pred CCCCCcceeEEec-cc----cccEEEEEEecCCC-EEEee------------CCCcEEEEECCCcceeeecCCCceeeeE
Q 003217 226 DSDDGFGEVLSWQ-AH----RGPVLSLCISSYGD-LWSGS------------EGGGIKIWPWEAIEKALSLKPEERHTAA 287 (838)
Q Consensus 226 ~~~~~~~~~~~l~-gH----~~~V~slafs~dG~-L~SgS------------~DgtIrvWd~~~~~~~~~~~~~~~~~~~ 287 (838)
+....+. ++ ...+.+++|+|||+ |++++ .++.|++||+.+++....+..
T Consensus 67 ------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~------- 133 (337)
T 1pby_B 67 ------ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA------- 133 (337)
T ss_dssp ------CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-------
T ss_pred ------CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-------
Confidence 3444443 22 23677899999997 66665 579999999976432211110
Q ss_pred EEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccc
Q 003217 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 288 ~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
...+..++.++++..++.+ ++.|.+||+.+++++..+..+... ....+++.....
T Consensus 134 -----------------------~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l 188 (337)
T 1pby_B 134 -----------------------PRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAV 188 (337)
T ss_dssp -----------------------CSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCC
T ss_pred -----------------------CCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEE
Confidence 1123345567777767766 578999999999987776543210 011122211111
Q ss_pred cccceeeEEEecCCCCccee-e--eeEeecCcceeeecCCcEEEEec-cC-----ccccCCCceEEEEEcCCCc-EEEEE
Q 003217 368 MEDEFKTKIVTSSKKDKAQS-S--FGFFQRSRNAIMGAADAVRRVAA-KG-----GFGDDNRRTEALTTSIDGM-IWTGG 437 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~-s--~~~~~~~~~~~~g~~~~v~~v~~-~g-----~~~~~~~~v~ala~S~dg~-l~Sgs 437 (838)
+ +... ...... . ......+..........+..+.. .+ .+..+...+..++++|||. ++++
T Consensus 189 ~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~- 258 (337)
T 1pby_B 189 W--------NQHE-SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA- 258 (337)
T ss_dssp C--------CCCT-TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-
T ss_pred e--------eecc-CCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-
Confidence 0 0000 000000 0 00000000000000001111111 00 0112334566788999987 5555
Q ss_pred CCCeEEEEcC-CCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC-Cccccccccc
Q 003217 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (838)
Q Consensus 438 ~DgtIrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH 497 (838)
++.|.+||+ +++.+..+..+ ..+.+++ ++|++|++++.++.|++||++ ++.+..+..+
T Consensus 259 -~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 259 -YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp -ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred -CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 688999999 57777776543 3345554 468888888889999999986 5666665544
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.9e-14 Score=152.28 Aligned_cols=241 Identities=15% Similarity=0.168 Sum_probs=163.2
Q ss_pred CCeEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EE-EeeCCC
Q 003217 192 SSVMCMVGDEASGVVWSGHR-------DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGG 262 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~-------DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~Dg 262 (838)
..+..++++|+|+.|++++. +++|.+||..++ +....+.. ...+.+++|+|+|+ ++ ++..++
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~--------~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~ 111 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL--------EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNS 111 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC--------CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC--------eEEEEEec-CCCcceEEECCCCCEEEEEecCCC
Confidence 46789999999999999885 568999999886 44444443 34477899999998 54 666789
Q ss_pred cEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC---CCcEEEEec
Q 003217 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDA 339 (838)
Q Consensus 263 tIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s---~~tI~lWD~ 339 (838)
.|.+||..+++....+...... .... ........+++++++..++.+. +..|.+||+
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~-----------------~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~ 171 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRK-----------------RTEE---VRPLQPRELVADDATNTVYISGIGKESVIWVVDG 171 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCC-----------------CCSS---CCCCEEEEEEEETTTTEEEEEEESSSCEEEEEET
T ss_pred EEEEEeCCCCeeEEEEecCCCc-----------------cccc---cCCCCCceEEECCCCCEEEEEecCCCceEEEEcC
Confidence 9999999775432222110000 0000 0001245677788888777665 457999999
Q ss_pred cCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCC
Q 003217 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (838)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (838)
.+++.+..+...+.
T Consensus 172 ~~~~~~~~~~~~~~------------------------------------------------------------------ 185 (353)
T 3vgz_A 172 GNIKLKTAIQNTGK------------------------------------------------------------------ 185 (353)
T ss_dssp TTTEEEEEECCCCT------------------------------------------------------------------
T ss_pred CCCceEEEecCCCC------------------------------------------------------------------
Confidence 99887655431110
Q ss_pred CceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeec----CCccEEEE--EEcCCEEEEEee-CCeEEEEeCC-Cc
Q 003217 420 RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY----LPFAVQCL--CTFGSQIWVGYM-NGIVQVLDLE-GN 489 (838)
Q Consensus 420 ~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~----H~~~V~sl--s~dG~~LasGs~-DgtIrlWD~~-g~ 489 (838)
.+..++++|||. +++++.++.|.+||. +++.+..+.. +...+.++ +++|++|++++. ++.|.+||++ ++
T Consensus 186 -~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 186 -MSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp -TCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred -ccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 012345778876 788888999999999 6777777664 45556655 457888887775 5999999986 66
Q ss_pred ccccccccccCEEEEEeCCCEEE-EEcCCCCeeeeecCCC
Q 003217 490 LLGGWVAHSSPVIKMAVGAGYIF-TLANHGGIRGWNVTSP 528 (838)
Q Consensus 490 ~i~~l~gH~~~V~sla~dg~~l~-S~S~DgtIrlWdl~s~ 528 (838)
.+..+..+...-..+.+++++++ +...+++|.+||+.+.
T Consensus 265 ~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 265 ILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp EEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred EEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 66666554443344556888655 5557999999997653
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-14 Score=173.49 Aligned_cols=278 Identities=9% Similarity=0.021 Sum_probs=160.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
.|.+++|+|||++|++++. +.|++||+.++. . .....+..|...|.+++|||||+ |++++ ++.|++||+.+
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~----~--~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~ 181 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEG----K--AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS 181 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCS----T--TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCC----c--ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC
Confidence 4889999999999999987 999999998850 0 03456778889999999999998 67776 56999999977
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CC------------------
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FL------------------ 332 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~------------------ 332 (838)
++.. .+........ . .+....+..-....+..++.++++..|+.++ +.
T Consensus 182 g~~~-~~~~~~~~~~-~-----------~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~ 248 (741)
T 2ecf_A 182 GRQM-QLTADGSTTI-G-----------NGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDV 248 (741)
T ss_dssp TEEE-ECCCCCCSSE-E-----------ESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEE
T ss_pred CCEE-EeccCCccce-e-----------ccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccc
Confidence 5432 1111100000 0 0000000000000123345555555554443 11
Q ss_pred ---------------cEEEEeccC-ccEEEEEec--CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeec
Q 003217 333 ---------------SFALWDART-RELLKVFNI--DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR 394 (838)
Q Consensus 333 ---------------tI~lWD~~t-g~~l~~l~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~ 394 (838)
.|.+||+.+ +++...... +......+.+ ++
T Consensus 249 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------pD 296 (741)
T 2ecf_A 249 IEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW--------------------------------RD 296 (741)
T ss_dssp EEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE--------------------------------EE
T ss_pred eEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe--------------------------------CC
Confidence 677888888 776443321 1122222222 22
Q ss_pred Ccceeeec-----CCc-EEEEec-cCc----cccCC-C---ceEEEEEcCCCc-EEEEECCCeEEEEcC--CCCeeeEee
Q 003217 395 SRNAIMGA-----ADA-VRRVAA-KGG----FGDDN-R---RTEALTTSIDGM-IWTGGANGLLLQWDP--NGNRLQDFQ 456 (838)
Q Consensus 395 ~~~~~~g~-----~~~-v~~v~~-~g~----~~~~~-~---~v~ala~S~dg~-l~Sgs~DgtIrlWD~--~g~~l~tl~ 456 (838)
+..++... .+. ++.+.. .+. +..+. . .+..++|+|||+ +++++.|++++||.. +|+ ++.+.
T Consensus 297 g~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~ 375 (741)
T 2ecf_A 297 PQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT 375 (741)
T ss_dssp TTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC
T ss_pred CCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee
Confidence 22111110 011 111111 110 00111 1 234678999998 567778887777755 567 88888
Q ss_pred cCCccEEEE---EEcCCEEEEEe-eCC--eEEEEeCC--CcccccccccccCEEEEE--eCCCEEEEE-cCC---CCeee
Q 003217 457 YLPFAVQCL---CTFGSQIWVGY-MNG--IVQVLDLE--GNLLGGWVAHSSPVIKMA--VGAGYIFTL-ANH---GGIRG 522 (838)
Q Consensus 457 ~H~~~V~sl---s~dG~~LasGs-~Dg--tIrlWD~~--g~~i~~l~gH~~~V~sla--~dg~~l~S~-S~D---gtIrl 522 (838)
.|...|.++ +++|++|+..+ .++ +++||++. |+....+.. ...+.+++ +||++++.. +.. ..+.+
T Consensus 376 ~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l 454 (741)
T 2ecf_A 376 HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIEL 454 (741)
T ss_dssp CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEE
Confidence 888888754 55888776544 455 89999864 666666665 56677776 478877643 332 35777
Q ss_pred eec
Q 003217 523 WNV 525 (838)
Q Consensus 523 Wdl 525 (838)
|+.
T Consensus 455 ~~~ 457 (741)
T 2ecf_A 455 FRA 457 (741)
T ss_dssp EET
T ss_pred EEc
Confidence 775
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-13 Score=146.80 Aligned_cols=248 Identities=11% Similarity=0.103 Sum_probs=153.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee-CCCcEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHR---DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~---DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtIr 265 (838)
...+..++|+|+|+ |++++. ++.|++|++.++. .+.+..+.+|...+..|+|+|||+ |++++ .+++|+
T Consensus 39 ~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~------~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~ 111 (347)
T 3hfq_A 39 TQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT------AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAE 111 (347)
T ss_dssp CSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE------EEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEE
T ss_pred cCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc------EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEE
Confidence 34567799999999 665554 6899999997752 123444566788899999999998 77766 789999
Q ss_pred EEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEecc-Ccc
Q 003217 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR-TRE 343 (838)
Q Consensus 266 vWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~-tg~ 343 (838)
+|++........ ...+ ...+.+.. .......+..++.++++..+++.. ++.|.+||+. +++
T Consensus 112 v~~~~~~g~~~~-------~~~~-------~~~~~~p~---~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~ 174 (347)
T 3hfq_A 112 VMKIAADGALTL-------TDTV-------QHSGHGPR---PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ 174 (347)
T ss_dssp EEEECTTSCEEE-------EEEE-------ECCCCCSS---TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC
T ss_pred EEEeCCCCCeee-------ccee-------ecCCCCCC---ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc
Confidence 999853111000 0000 00000000 000022466788888877433333 4679999987 454
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceE
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (838)
+..... ... .....+.
T Consensus 175 ~~~~~~---------------------------~~~-------------------------------------~~g~~p~ 190 (347)
T 3hfq_A 175 LSEQSV---------------------------LTM-------------------------------------EAGFGPR 190 (347)
T ss_dssp EEEEEE---------------------------EEC-------------------------------------CTTCCEE
T ss_pred EEEeee---------------------------EEc-------------------------------------CCCCCCc
Confidence 321100 000 0001234
Q ss_pred EEEEcCCCc-EEE-EECCCeEEEEcCC---CCe--eeEeecCC------ccEEEEE--EcCCEEEEEe-eCCeEEEEeCC
Q 003217 424 ALTTSIDGM-IWT-GGANGLLLQWDPN---GNR--LQDFQYLP------FAVQCLC--TFGSQIWVGY-MNGIVQVLDLE 487 (838)
Q Consensus 424 ala~S~dg~-l~S-gs~DgtIrlWD~~---g~~--l~tl~~H~------~~V~sls--~dG~~LasGs-~DgtIrlWD~~ 487 (838)
.++++|||+ +++ +..++.|++|++. |+. +..+.... ..+..++ +||++|+++. .+++|.+||+.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 578999998 655 4467899999983 432 33333222 3466554 5799886554 58999999986
Q ss_pred --C--cccccccccccCEEEEE--eCCCEEEEEcC-CCCeeeeecC
Q 003217 488 --G--NLLGGWVAHSSPVIKMA--VGAGYIFTLAN-HGGIRGWNVT 526 (838)
Q Consensus 488 --g--~~i~~l~gH~~~V~sla--~dg~~l~S~S~-DgtIrlWdl~ 526 (838)
| +.+..+..|...+.+++ +||++|+.++. +++|++|++.
T Consensus 271 ~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 271 ADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp GGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 3 34556666666677776 47888887765 5899999763
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-13 Score=165.10 Aligned_cols=272 Identities=11% Similarity=0.014 Sum_probs=149.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECC
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (838)
.+|.+++|+|| +.++.+ .|++|++||+.++ ....+..|.+.|.+++|||||+ |++ +.|+.|++|++.
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~---------~~~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~ 149 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR---------KVTYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGG 149 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT---------EEEEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECB
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCC---------ceEEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecC
Confidence 57999999999 555554 4699999999885 3445566778899999999998 566 478999999997
Q ss_pred C-----cceeeecCCCceeeeEEEEeeceeecccceecccee--eeecCCeEEEEEcCCCCEEEEeC-C-CcEEEEeccC
Q 003217 271 A-----IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFS--SILTSDIKNLLSDHSRAKVWSAG-F-LSFALWDART 341 (838)
Q Consensus 271 ~-----~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~--~~~s~~v~~las~~~~~~V~s~s-~-~tI~lWD~~t 341 (838)
+ ++.. .+........ .++.. .-....+..+..++++..|+.++ + ..+..|.+..
T Consensus 150 ~~~~~~g~~~-~~~~~~~~~~----------------~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~ 212 (706)
T 2z3z_A 150 KLGEGMSRAI-AVTIDGTETL----------------VYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVD 212 (706)
T ss_dssp CTTSCCCCCE-ESCSCCBTTE----------------EESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEE
T ss_pred cccccCCCcE-EeccCCCCCe----------------EcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeec
Confidence 6 4322 1111000000 00000 00001134566777777776654 1 1122111100
Q ss_pred ccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCc
Q 003217 342 RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (838)
Q Consensus 342 g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~ 421 (838)
.................. ......++++... ......+. ....+...
T Consensus 213 ------~~~~~~~~~~~~y~~~g~--~~~~~~l~~~d~~----------------------~~~~~~~~---~~~~~~~~ 259 (706)
T 2z3z_A 213 ------YHPLEAESKPLYYPMAGT--PSHHVTVGIYHLA----------------------TGKTVYLQ---TGEPKEKF 259 (706)
T ss_dssp ------CCSSSCEEEEECCCBTTS--CCCEEEEEEEETT----------------------TTEEEECC---CCSCTTCE
T ss_pred ------cCCCCCceEEeeCCCCCC--CCCeeEEEEEECC----------------------CCceEeec---cCCCCcee
Confidence 000000000000000000 0000111111110 00000000 00123455
Q ss_pred eEEEEEcCCCc-EEEEECCC-----eEEEEcC-CCCeeeEee--cCCccE---E--EEEE--cCCEEEEEeeCCeEEEEe
Q 003217 422 TEALTTSIDGM-IWTGGANG-----LLLQWDP-NGNRLQDFQ--YLPFAV---Q--CLCT--FGSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs~Dg-----tIrlWD~-~g~~l~tl~--~H~~~V---~--sls~--dG~~LasGs~DgtIrlWD 485 (838)
+..++++|||+ |++++.|+ +|++||+ +|+..+.+. .+...+ . .+++ ||++|++++.|+.++||+
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~ 339 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL 339 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence 77899999998 77777665 8999999 564555443 233222 2 4566 889999999999999997
Q ss_pred C--CCcccccccccccCEEE-EE--eCCCEEEEE-cCCC--Ceeeeec
Q 003217 486 L--EGNLLGGWVAHSSPVIK-MA--VGAGYIFTL-ANHG--GIRGWNV 525 (838)
Q Consensus 486 ~--~g~~i~~l~gH~~~V~s-la--~dg~~l~S~-S~Dg--tIrlWdl 525 (838)
. +++.+..+..|...|.+ ++ +|++.++.+ +.++ .+++|.+
T Consensus 340 ~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 340 YDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp EETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred EECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 5 47778888888888876 45 477777644 4444 3455543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=165.36 Aligned_cols=111 Identities=14% Similarity=-0.018 Sum_probs=84.1
Q ss_pred CCCceEEEEEcCC-Cc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCCcccc
Q 003217 418 DNRRTEALTTSID-GM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLG 492 (838)
Q Consensus 418 ~~~~v~ala~S~d-g~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~ 492 (838)
|...|.+++++|+ +. +++|+.||+|++||+ ++.++....+|...|+++++ +|++|++|+.||+|++||++++...
T Consensus 148 h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~ 227 (434)
T 2oit_A 148 AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKK 227 (434)
T ss_dssp GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEE
T ss_pred CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccc
Confidence 4445678889887 54 789999999999999 67677677789999999976 6899999999999999999866555
Q ss_pred ccccc-------ccCEEEEEeCC--CEEE-EEcCCCC------eeeeecCCC
Q 003217 493 GWVAH-------SSPVIKMAVGA--GYIF-TLANHGG------IRGWNVTSP 528 (838)
Q Consensus 493 ~l~gH-------~~~V~sla~dg--~~l~-S~S~Dgt------IrlWdl~s~ 528 (838)
.+..| ...|.++.+++ .+++ ..+.||. +++|++...
T Consensus 228 ~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 228 VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 44443 34788888744 3443 3445543 889998653
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.2e-14 Score=152.96 Aligned_cols=69 Identities=4% Similarity=-0.161 Sum_probs=54.6
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccc-ccEEEEEEecCCC-E-EEeeCCCcEEEEECCCcc
Q 003217 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 197 la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~ 273 (838)
++++++++++++++.|++|++||+.++ +....+..+. ..+.+++|+|||+ + ++++.+++|.+||+.+++
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~ 76 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASD--------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 76 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTT--------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCC--------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc
Confidence 456778899999999999999999987 4555555443 2567899999997 5 466788999999997754
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=173.52 Aligned_cols=277 Identities=9% Similarity=0.001 Sum_probs=167.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccc---cEEEEEEecCCC-EEEeeCC-------
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---PVLSLCISSYGD-LWSGSEG------- 261 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~---~V~slafs~dG~-L~SgS~D------- 261 (838)
.+.+++|+|||+++++ +.||+|++||+.++ +....+.+|.. .|.+++|||||+ |++++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g--------~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~ 88 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETN--------TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS 88 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC--------CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCC--------cEEEEeccccccccccceEEECCCCCEEEEEecCccceeec
Confidence 4667899999998877 78999999999987 45566677765 499999999998 7888764
Q ss_pred --CcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEec
Q 003217 262 --GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA 339 (838)
Q Consensus 262 --gtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~ 339 (838)
++|.+||+++++. ..+..... + ...+..++.++++..|+.++++.|++||+
T Consensus 89 ~~~~i~~~d~~~~~~-~~l~~~~~----------------~----------~~~~~~~~~SPdG~~la~~~~~~i~~~~~ 141 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDP-QSLDPPEV----------------S----------NAKLQYAGWGPKGQQLIFIFENNIYYCAH 141 (723)
T ss_dssp CCSEEEEEESSSCCC-EECCCTTC----------------C----------SCCCSBCCBCSSTTCEEEEETTEEEEESS
T ss_pred ceeeEEEEECCCCce-EeccCCcc----------------c----------cccccccEECCCCCEEEEEECCeEEEEEC
Confidence 7788999987543 11111000 0 11234456677888888887789999999
Q ss_pred cCccEEEEEecCCc-eEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCC--c--EEEEeccCc
Q 003217 340 RTRELLKVFNIDGQ-IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD--A--VRRVAAKGG 414 (838)
Q Consensus 340 ~tg~~l~~l~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~--~--v~~v~~~g~ 414 (838)
.+++..+....+.. +.. ....+...++++ ......+.+++++..++....+ . +..+...
T Consensus 142 ~~g~~~~~~~~~~~~~~~----~g~~~~v~~ee~----------~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~-- 205 (723)
T 1xfd_A 142 VGKQAIRVVSTGKEGVIY----NGLSDWLYEEEI----------LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY-- 205 (723)
T ss_dssp SSSCCEEEECCCBTTTEE----EEECCHHHHHTT----------SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCC--
T ss_pred CCCceEEEecCCCCCceE----CcccceeEEEEe----------ccCcceEEECCCCCEEEEEEECCCccceEEeecc--
Confidence 99887655432111 000 000000000000 0011234566666554444322 1 1111110
Q ss_pred cccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecC------CccEEEEE--EcCCEEEEEee----CCeE
Q 003217 415 FGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYL------PFAVQCLC--TFGSQIWVGYM----NGIV 481 (838)
Q Consensus 415 ~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H------~~~V~sls--~dG~~LasGs~----DgtI 481 (838)
.......+..+.++++|.. ..+.+|++||+ ++++...+..| ...|.+++ +||++|++.+. +..|
T Consensus 206 ~~~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i 282 (723)
T 1xfd_A 206 TGSIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSIL 282 (723)
T ss_dssp SSSSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEE
T ss_pred CCcCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEE
Confidence 0112234566777777652 23458999999 56666677654 56777765 58888877653 3689
Q ss_pred EEEeCC-Ccccccccc-cccCEE----EEE--eCCCEEEE--EcCCC------Ceeeee
Q 003217 482 QVLDLE-GNLLGGWVA-HSSPVI----KMA--VGAGYIFT--LANHG------GIRGWN 524 (838)
Q Consensus 482 rlWD~~-g~~i~~l~g-H~~~V~----sla--~dg~~l~S--~S~Dg------tIrlWd 524 (838)
++||++ +++...+.. |...|. +++ +||+.++. ...|+ .|.+||
T Consensus 283 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 283 TLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp EEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred EEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 999987 566555544 334433 344 58887764 44666 456666
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.2e-13 Score=143.25 Aligned_cols=283 Identities=9% Similarity=0.044 Sum_probs=157.6
Q ss_pred CCEEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEE
Q 003217 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW-SGHRDGRIMCW 218 (838)
Q Consensus 142 ~~~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~La-SGs~DGtIrvW 218 (838)
++.+++ +.++.|++||+.+...... + .+.+...+.+++++|+|+.++ ++..++.|.+|
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~-----------------~--~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~ 70 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKS-----------------C--VMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI 70 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEE-----------------E--ECSSCCSSCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEE-----------------E--ecCCCCCCceeEECCCCCEEEEEeCCCCcEEEE
Confidence 445554 4688999999976543211 0 011012467899999998665 55678999999
Q ss_pred ECCCCccCCCCCcceeEEec-cc-----cccEEEEEEecCCC-EEEeeCC------------CcEEEEECCCcceeeecC
Q 003217 219 KMNARLLDSDDGFGEVLSWQ-AH-----RGPVLSLCISSYGD-LWSGSEG------------GGIKIWPWEAIEKALSLK 279 (838)
Q Consensus 219 d~~~g~~~~~~~~~~~~~l~-gH-----~~~V~slafs~dG~-L~SgS~D------------gtIrvWd~~~~~~~~~~~ 279 (838)
|+.++ +....+. +| ...+.+++|+|||+ |++++.+ +.|.+||+.+++.....
T Consensus 71 d~~t~--------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~- 141 (349)
T 1jmx_B 71 DLDTC--------KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV- 141 (349)
T ss_dssp ETTTT--------EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS-
T ss_pred eCCCC--------cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee-
Confidence 99886 4444444 22 23478899999998 6777755 89999999763211000
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeee
Q 003217 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVD 359 (838)
Q Consensus 280 ~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (838)
..+ . + ...+.++++++++. ++.++ ..|.+||+.+++++..+...... ....
T Consensus 142 ------~~~---------~-~----------~~~~~~~~~s~dg~-l~~~~-~~i~~~d~~~~~~~~~~~~~~~~-~~~~ 192 (349)
T 1jmx_B 142 ------RTF---------P-M----------PRQVYLMRAADDGS-LYVAG-PDIYKMDVKTGKYTVALPLRNWN-RKGY 192 (349)
T ss_dssp ------EEE---------E-C----------CSSCCCEEECTTSC-EEEES-SSEEEECTTTCCEEEEECSTTCC-CTTB
T ss_pred ------eec---------c-C----------CCcccceeECCCCc-EEEcc-CcEEEEeCCCCceeccccccccC-Cccc
Confidence 000 0 0 11244566677776 55554 34999999999988776532100 0000
Q ss_pred cccCcccccccceeeEEEecCCCCcc---eeeeeEeecCc-----------ceeeecCC-cEEEEeccCccccCCCceEE
Q 003217 360 MSLLPDFAMEDEFKTKIVTSSKKDKA---QSSFGFFQRSR-----------NAIMGAAD-AVRRVAAKGGFGDDNRRTEA 424 (838)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~s~~~~~~~---~~s~~~~~~~~-----------~~~~g~~~-~v~~v~~~g~~~~~~~~v~a 424 (838)
..+..... +........ ...+.+.+++. ........ .+..+. +......+..
T Consensus 193 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 259 (349)
T 1jmx_B 193 SAPDVLYF---------WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE----FADLTELYFT 259 (349)
T ss_dssp CCCBCCCC---------CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE----EEECSSCEEE
T ss_pred cCccceee---------ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecc----cccCCCccee
Confidence 00000000 000000000 00011110000 00011111 111111 1112345677
Q ss_pred EEEcC-CCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCC-Cccccccccc
Q 003217 425 LTTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (838)
Q Consensus 425 la~S~-dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH 497 (838)
++++| ||. ++++ ++.|.+||+ +++.++.+..+. .+.++ +++|++|++++.++.|++||++ ++.+..+..+
T Consensus 260 ~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 260 GLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH-TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS-CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred eEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC-CccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 88999 987 4555 789999999 677777775432 34455 4578888888889999999987 5666555433
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.5e-13 Score=144.76 Aligned_cols=258 Identities=10% Similarity=0.074 Sum_probs=156.5
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec-cccc-cEEEEEEecCCC-E-EEeeCCCcEEEEECCCcceeeecC
Q 003217 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRG-PVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLK 279 (838)
Q Consensus 204 ~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~-gH~~-~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~~~~~~~ 279 (838)
++|++++.|++|++||+.++ +....+. ++.. .+.+++|+|+|+ | ++++.++.|.+||+.+++....+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 73 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM--------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT--------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCC--------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence 47899999999999999986 4455544 3322 478899999996 5 577778999999997754322221
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEe-------------CCCcEEEEeccCccEEE
Q 003217 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-------------GFLSFALWDARTRELLK 346 (838)
Q Consensus 280 ~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~-------------s~~tI~lWD~~tg~~l~ 346 (838)
...... + ...+..++.++++..++.+ .++.|.+||+.+++.+.
T Consensus 74 ~~~~~~--------------~----------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 74 LSTPEE--------------R----------VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp CCBTTE--------------E----------EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred cCCccc--------------c----------cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEE
Confidence 100000 0 0012345666777777776 35789999999998877
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec-cCc----cccCCCc
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-KGG----FGDDNRR 421 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~g~----~~~~~~~ 421 (838)
.+.....+ ..+.++ +++..++++ ...+..+.. .+. +..+. .
T Consensus 130 ~~~~~~~~-~~~~~s-------------------------------~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~-~ 175 (337)
T 1pby_B 130 AFEAPRQI-TMLAWA-------------------------------RDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQS-W 175 (337)
T ss_dssp EEECCSSC-CCEEEC-------------------------------TTSSCEEEE-SSSEEEEETTTTEEEEEECSTT-T
T ss_pred EEeCCCCc-ceeEEC-------------------------------CCCCEEEEe-CCeEEEEECCCCcEeeeeeccc-c
Confidence 66532211 111222 222222222 111222221 111 11111 0
Q ss_pred eEEEEEcCCCc-EEEEE-CCC-----------------------eEEEEcC-CCCee-eEeecCCccEEEEE--EcCCEE
Q 003217 422 TEALTTSIDGM-IWTGG-ANG-----------------------LLLQWDP-NGNRL-QDFQYLPFAVQCLC--TFGSQI 472 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs-~Dg-----------------------tIrlWD~-~g~~l-~tl~~H~~~V~sls--~dG~~L 472 (838)
...+.++|||. ++..+ .++ .|.+||+ ++++. ..+..|...+.+++ ++|++|
T Consensus 176 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 255 (337)
T 1pby_B 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255 (337)
T ss_dssp TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEE
Confidence 01236788876 44333 222 4789999 56653 23445666676665 478899
Q ss_pred EEEeeCCeEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecCCCCC
Q 003217 473 WVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 473 asGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
+++ ++.|++||++ ++.+..+..+ ..+.+++ +|++++++++.|+.|++||+.+...
T Consensus 256 ~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 256 FGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp EEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred EEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 988 7999999997 5666665543 3456665 4788899889999999999876543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-13 Score=142.78 Aligned_cols=213 Identities=10% Similarity=-0.064 Sum_probs=145.0
Q ss_pred EEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCC-cceeeecCCCceee
Q 003217 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA-IEKALSLKPEERHT 285 (838)
Q Consensus 208 SGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~-~~~~~~~~~~~~~~ 285 (838)
+++.|++|++||+.++ ....+..|.+.|.+++|+|||+ |++++ ++.|++||+.+ ++.........
T Consensus 17 ~~~~~~~i~~~d~~~~---------~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~--- 83 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR---------KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA--- 83 (297)
T ss_dssp -CCCCEEEEEEETTTT---------EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC---
T ss_pred CCCcceeEEEEeCCCC---------ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc---
Confidence 4568899999999886 3446678999999999999999 56665 88999999977 54322111100
Q ss_pred eEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC---CcEEEEec--cCccEEEEEecCCceEEeeec
Q 003217 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF---LSFALWDA--RTRELLKVFNIDGQIENRVDM 360 (838)
Q Consensus 286 ~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~---~tI~lWD~--~tg~~l~~l~~~~~~~~~~~~ 360 (838)
...+..++.++++..++.+.. ...+||.+ .+++. ..+
T Consensus 84 -------------------------~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~------------ 125 (297)
T 2ojh_A 84 -------------------------TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLM------------ 125 (297)
T ss_dssp -------------------------CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EEC------------
T ss_pred -------------------------cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEe------------
Confidence 112334556667776666552 24455543 22221 000
Q ss_pred ccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EE-EEEC
Q 003217 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IW-TGGA 438 (838)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~-Sgs~ 438 (838)
.. ...+..++++|||. |+ +++.
T Consensus 126 -------------------------------------------------------~~-~~~~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 126 -------------------------------------------------------TK-NLPSYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp -------------------------------------------------------CS-SSSEEEEEECTTSSEEEEEEEE
T ss_pred -------------------------------------------------------ec-CCCccceEECCCCCEEEEEECC
Confidence 00 01144577899987 54 7778
Q ss_pred CCeEEEEcC--CCCeeeEeecCCccEEEEEE--cCCEEEEEe-eCCeEEEEeC--CCcccccccccccCEEEEE--eCCC
Q 003217 439 NGLLLQWDP--NGNRLQDFQYLPFAVQCLCT--FGSQIWVGY-MNGIVQVLDL--EGNLLGGWVAHSSPVIKMA--VGAG 509 (838)
Q Consensus 439 DgtIrlWD~--~g~~l~tl~~H~~~V~sls~--dG~~LasGs-~DgtIrlWD~--~g~~i~~l~gH~~~V~sla--~dg~ 509 (838)
|+.+++|++ .+.....+..|...+.++++ +|++|+.++ .++.++||++ .+..+..+..|...+.+++ ++|+
T Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 229 (297)
T 2ojh_A 150 DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGD 229 (297)
T ss_dssp TTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSS
T ss_pred CCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCC
Confidence 999999996 45566777788888988865 788887766 5899999986 4667778888888888877 4788
Q ss_pred EEEEEcCC-----------CCeeeeecCC
Q 003217 510 YIFTLANH-----------GGIRGWNVTS 527 (838)
Q Consensus 510 ~l~S~S~D-----------gtIrlWdl~s 527 (838)
+++.++.+ +.|.+||+..
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 230 KVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred EEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 89888766 4588888654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-12 Score=140.46 Aligned_cols=222 Identities=9% Similarity=-0.002 Sum_probs=145.1
Q ss_pred EEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee-CCCcEEEEECCCcce
Q 003217 198 VGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWEAIEK 274 (838)
Q Consensus 198 a~s~dg-~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtIrvWd~~~~~~ 274 (838)
.|++++ ..+++++.+++|++||+.++ +....+..+...+ +++|+|||+ |+.++ .++.|.+||+.+++.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTL--------EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP 74 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTC--------CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCccc--------ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce
Confidence 344444 45778889999999999987 4555556666667 999999998 66554 489999999976542
Q ss_pred -eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEE-EEEcCCCCEEEEeCCC----cEEEEeccCccEEEEE
Q 003217 275 -ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKN-LLSDHSRAKVWSAGFL----SFALWDARTRELLKVF 348 (838)
Q Consensus 275 -~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~-las~~~~~~V~s~s~~----tI~lWD~~tg~~l~~l 348 (838)
...... ...... +++++++..++++... .|.+||+.+++++..+
T Consensus 75 ~~~~~~~------------------------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~ 124 (331)
T 3u4y_A 75 KVVAIQE------------------------------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTI 124 (331)
T ss_dssp EEEEEEE------------------------------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEE
T ss_pred eEEeccc------------------------------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEE
Confidence 111100 111223 5667778877755544 8999999988875543
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S 428 (838)
..+ .....++++
T Consensus 125 ~~~--------------------------------------------------------------------~~~~~~~~s 136 (331)
T 3u4y_A 125 PIP--------------------------------------------------------------------YDAVGIAIS 136 (331)
T ss_dssp ECC--------------------------------------------------------------------TTEEEEEEC
T ss_pred ECC--------------------------------------------------------------------CCccceEEC
Confidence 211 012357788
Q ss_pred CCCc-EEEE-ECCCe-EEEEcCC--CCee---eEeecCCccEEEEE--EcCCEEEEEe-eCCeEEEEeCC-Ccc---ccc
Q 003217 429 IDGM-IWTG-GANGL-LLQWDPN--GNRL---QDFQYLPFAVQCLC--TFGSQIWVGY-MNGIVQVLDLE-GNL---LGG 493 (838)
Q Consensus 429 ~dg~-l~Sg-s~Dgt-IrlWD~~--g~~l---~tl~~H~~~V~sls--~dG~~LasGs-~DgtIrlWD~~-g~~---i~~ 493 (838)
|||+ ++++ ..++. |.+|++. |... .....+...+.+++ ++|++|++++ .++.|++||++ ++. +..
T Consensus 137 pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~ 216 (331)
T 3u4y_A 137 PNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNA 216 (331)
T ss_dssp TTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred CCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeee
Confidence 9986 6544 45577 9999983 3322 11112334456654 4788776655 58999999987 666 666
Q ss_pred ccccccCEEEEE--eCCCEEEE-EcCCCCeeeeecCC
Q 003217 494 WVAHSSPVIKMA--VGAGYIFT-LANHGGIRGWNVTS 527 (838)
Q Consensus 494 l~gH~~~V~sla--~dg~~l~S-~S~DgtIrlWdl~s 527 (838)
+..+ ..+..++ +||++++. ...++.|.+||+.+
T Consensus 217 ~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 217 VGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp EECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred ccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence 6544 4455555 57887654 45688899999765
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=7.7e-12 Score=132.42 Aligned_cols=234 Identities=8% Similarity=0.107 Sum_probs=157.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec------cccccEEEEEE-ecCCCEEEeeC--CC
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ------AHRGPVLSLCI-SSYGDLWSGSE--GG 262 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~------gH~~~V~slaf-s~dG~L~SgS~--Dg 262 (838)
..+.+++++++|+++++.+.++.|++||.++ +....+. +|...+.+|++ .++|+||.+.. ++
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g---------~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~ 100 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEG---------RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH 100 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTS---------CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCC---------cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCC
Confidence 4688999999999888889999999999874 3344442 45568899999 47888765553 89
Q ss_pred cEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccC
Q 003217 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART 341 (838)
Q Consensus 263 tIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~t 341 (838)
.|++|+.+. .....+... .......++.++++..+++.. .+.|.+||..
T Consensus 101 ~i~~~d~~g-~~~~~~~~~----------------------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 150 (286)
T 1q7f_A 101 QIQIYNQYG-QFVRKFGAT----------------------------ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN- 150 (286)
T ss_dssp EEEEECTTS-CEEEEECTT----------------------------TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred EEEEECCCC-cEEEEecCc----------------------------cCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-
Confidence 999999533 211111000 012355677777665444433 4578888853
Q ss_pred ccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCc
Q 003217 342 RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (838)
Q Consensus 342 g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~ 421 (838)
++.+..+... .+...
T Consensus 151 g~~~~~~~~~-----------------------------------------------------------------~~~~~ 165 (286)
T 1q7f_A 151 GNVLHKFGCS-----------------------------------------------------------------KHLEF 165 (286)
T ss_dssp SCEEEEEECT-----------------------------------------------------------------TTCSS
T ss_pred CCEEEEeCCC-----------------------------------------------------------------CccCC
Confidence 4433322100 01122
Q ss_pred eEEEEEcCCCcEEEEE-CCCeEEEEcCCCCeeeEeecC--CccEEEEEE--cCCEEEEEeeCC-eEEEEeCCCccccccc
Q 003217 422 TEALTTSIDGMIWTGG-ANGLLLQWDPNGNRLQDFQYL--PFAVQCLCT--FGSQIWVGYMNG-IVQVLDLEGNLLGGWV 495 (838)
Q Consensus 422 v~ala~S~dg~l~Sgs-~DgtIrlWD~~g~~l~tl~~H--~~~V~sls~--dG~~LasGs~Dg-tIrlWD~~g~~i~~l~ 495 (838)
+..++++++|.++.+. .++.|++||.+|+.+.++..+ ...+..+++ +|+.+++...++ .|++||.+|+.+..+.
T Consensus 166 p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~ 245 (286)
T 1q7f_A 166 PNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALE 245 (286)
T ss_dssp EEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEE
T ss_pred cEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEc
Confidence 4568889999976554 578999999999888887654 357788876 465555555565 9999999888877777
Q ss_pred cccc--CEEEEEe--CCCEEEEEcCCCCeeeeecCCCCC
Q 003217 496 AHSS--PVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 496 gH~~--~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
.|.. .+.++++ +|+.+++ +.|++|++|++....|
T Consensus 246 ~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 246 SKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp ESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred ccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 6643 3667764 6766666 6799999999765443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.7e-14 Score=168.01 Aligned_cols=285 Identities=10% Similarity=-0.037 Sum_probs=166.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccc---cEEEEEEecCCC-EEEeeC---------CC
Q 003217 196 CMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---PVLSLCISSYGD-LWSGSE---------GG 262 (838)
Q Consensus 196 ~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~---~V~slafs~dG~-L~SgS~---------Dg 262 (838)
+++|+|+|++++++ .|++|++||+.++ +....+.+|.. .|.+++|||||+ |++++. |+
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~ 90 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETG--------QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTA 90 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSC--------CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCC--------cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecce
Confidence 67899999766654 6999999999987 45555566654 499999999998 777765 79
Q ss_pred cEEEEECCCccee--eecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEecc
Q 003217 263 GIKIWPWEAIEKA--LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDAR 340 (838)
Q Consensus 263 tIrvWd~~~~~~~--~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~ 340 (838)
+|++||+++++.. ..+ ...+..++.+++|..|+.+.++.|++||+.
T Consensus 91 ~i~~~d~~~g~~~~~~~l--------------------------------~~~~~~~~~SPDG~~la~~~~~~i~~~~~~ 138 (719)
T 1z68_A 91 TYYIYDLSNGEFVRGNEL--------------------------------PRPIQYLCWSPVGSKLAYVYQNNIYLKQRP 138 (719)
T ss_dssp EEEEEETTTTEECCSSCC--------------------------------CSSBCCEEECSSTTCEEEEETTEEEEESST
T ss_pred EEEEEECCCCccccceec--------------------------------CcccccceECCCCCEEEEEECCeEEEEeCC
Confidence 9999999775421 000 112445677888888888888899999999
Q ss_pred CccEEEEEe-cCCc-eE----------------EeeecccCcccccc----c-ceeeEEEecCCCC--cceeeeeEeecC
Q 003217 341 TRELLKVFN-IDGQ-IE----------------NRVDMSLLPDFAME----D-EFKTKIVTSSKKD--KAQSSFGFFQRS 395 (838)
Q Consensus 341 tg~~l~~l~-~~~~-~~----------------~~~~~s~~~~~~~~----~-~~~~~~~s~~~~~--~~~~s~~~~~~~ 395 (838)
++++.+... ++.. +. ..+.++++....+. + .++.......... .....+.+.
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp--- 215 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP--- 215 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC---
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCC---
Confidence 988754321 1111 00 12233333222110 0 0000000000000 000000000
Q ss_pred cceeeecCC---cEEEEecc-Cc------------cccCCCceEEEEEcCCCcEEEE-EC--C--CeEEEEc----C-CC
Q 003217 396 RNAIMGAAD---AVRRVAAK-GG------------FGDDNRRTEALTTSIDGMIWTG-GA--N--GLLLQWD----P-NG 449 (838)
Q Consensus 396 ~~~~~g~~~---~v~~v~~~-g~------------~~~~~~~v~ala~S~dg~l~Sg-s~--D--gtIrlWD----~-~g 449 (838)
..|... .++.+... +. +..+...+..+++|||++++.. .. + ..|.+|| + +|
T Consensus 216 ---~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g 292 (719)
T 1z68_A 216 ---KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW 292 (719)
T ss_dssp ---BTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred ---CCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC
Confidence 001111 11222211 11 2245667889999999986533 22 2 2488999 8 56
Q ss_pred CeeeEe----ecCCccEE-----E--EEEcCCEEEE--EeeCC--eEEEEeCCCcccccccccccCEEEEE-eCCCEEEE
Q 003217 450 NRLQDF----QYLPFAVQ-----C--LCTFGSQIWV--GYMNG--IVQVLDLEGNLLGGWVAHSSPVIKMA-VGAGYIFT 513 (838)
Q Consensus 450 ~~l~tl----~~H~~~V~-----s--ls~dG~~Las--Gs~Dg--tIrlWD~~g~~i~~l~gH~~~V~sla-~dg~~l~S 513 (838)
++...+ .+|..+|. + +++||+.|+. +..+| .|.+||+.+.....+..+...|..+. .+++.++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~d~~~i~~ 372 (719)
T 1z68_A 293 DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRVTQDSLFY 372 (719)
T ss_dssp ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEECSSEEEE
T ss_pred ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEEeCCEEEE
Confidence 666666 46776655 3 4568886554 33444 67788887655666777776776643 37777765
Q ss_pred EcC-----CCCeeeeecCC
Q 003217 514 LAN-----HGGIRGWNVTS 527 (838)
Q Consensus 514 ~S~-----DgtIrlWdl~s 527 (838)
.+. ++++++|.+..
T Consensus 373 ~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 373 SSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EESCGGGCTTCBEEEEEEC
T ss_pred EEecCCCCCceEEEEEEeC
Confidence 554 48899999764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-13 Score=157.86 Aligned_cols=253 Identities=14% Similarity=0.075 Sum_probs=159.3
Q ss_pred EEecCCEEEE-ec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC---C
Q 003217 138 IVCTEEQLWA-GG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR---D 212 (838)
Q Consensus 138 l~~~~~~l~~-g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~---D 212 (838)
+..+++.|.. +. |++++||+++...... ++. ++...|.+++|+|| +++++++. +
T Consensus 29 ~~~DG~~la~~s~~~g~~~lw~~~~g~~~~------------------lt~--~~~~~~~~~~~spd-~~l~~~~~~~g~ 87 (582)
T 3o4h_A 29 GVVDGDKLLVVGFSEGSVNAYLYDGGETVK------------------LNR--EPINSVLDPHYGVG-RVILVRDVSKGA 87 (582)
T ss_dssp EEETTTEEEEEEEETTEEEEEEEETTEEEE------------------CCS--SCCSEECEECTTCS-EEEEEEECSTTS
T ss_pred cCCCCCeEEEEEccCCceeEEEEcCCCcEe------------------eec--ccccccccccCCCC-eEEEEeccCCCC
Confidence 3456676654 44 8999999974322110 111 10357899999999 89998886 5
Q ss_pred CcEEEEECCC--CccCCCCCcceeEEeccccccEEEEEEecCCC--E-EEeeCCCcEEEEECCCcceeeecCCCceeeeE
Q 003217 213 GRIMCWKMNA--RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (838)
Q Consensus 213 GtIrvWd~~~--g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L-~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~ 287 (838)
...++|.+.. .. ... .+..+. .+...+|+|||+ + ++++.|+++ |||+++++... +..
T Consensus 88 ~~~~l~~~~~~~~g-------~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~-l~~------- 149 (582)
T 3o4h_A 88 EQHALFKVNTSRPG-------EEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRE-LAR------- 149 (582)
T ss_dssp CCEEEEEEETTSTT-------CCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEE-EEE-------
T ss_pred cceEEEEEeccCCC-------ccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEE-eec-------
Confidence 5667766543 20 122 332222 233568888885 3 455555555 99997653211 100
Q ss_pred EEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-C----CcEEEEeccCccEEEEEecCCceEEeeeccc
Q 003217 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-F----LSFALWDARTRELLKVFNIDGQIENRVDMSL 362 (838)
Q Consensus 288 ~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~----~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~ 362 (838)
... ..++++++|..|++++ + .+|++||+.++++. .+..
T Consensus 150 -----------------------~~~-~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~------------ 192 (582)
T 3o4h_A 150 -----------------------LPG-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDS------------ 192 (582)
T ss_dssp -----------------------ESS-CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECC------------
T ss_pred -----------------------CCC-ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eeec------------
Confidence 001 3455666777776444 3 46889998887652 2211
Q ss_pred CcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCC-
Q 003217 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANG- 440 (838)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~Dg- 440 (838)
+...+..++|||||+ |+++..++
T Consensus 193 -------------------------------------------------------~~~~~~~~~~SpDG~~l~~~~~~~~ 217 (582)
T 3o4h_A 193 -------------------------------------------------------GEGSFSSASISPGMKVTAGLETARE 217 (582)
T ss_dssp -------------------------------------------------------SSCEEEEEEECTTSCEEEEEECSSC
T ss_pred -------------------------------------------------------CCCccccceECCCCCEEEEccCCCe
Confidence 112234678999998 67777788
Q ss_pred -eEEEEcC-CCCeeeEeecCCccEEE----------EEEcCCEEEEEeeCCeEEEEeCCCcccccccccccCEEEEEe-C
Q 003217 441 -LLLQWDP-NGNRLQDFQYLPFAVQC----------LCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV-G 507 (838)
Q Consensus 441 -tIrlWD~-~g~~l~tl~~H~~~V~s----------ls~dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~-d 507 (838)
.|++||+ +|++. .+.+|...|.+ +++||..+++++.|++++||++ |+++... .+.|.++++ +
T Consensus 218 ~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-g~~~~~~---~~~v~~~~~sd 292 (582)
T 3o4h_A 218 ARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-GERVEAP---QGNHGRVVLWR 292 (582)
T ss_dssp EEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET-TEEECCC---SSEEEEEEEET
T ss_pred eEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE-CCeeccC---CCceEEEEecC
Confidence 8999999 56666 77777765542 5568988889999999999999 8766533 355766654 7
Q ss_pred CCEEEEEcCCCC---eeeeecC
Q 003217 508 AGYIFTLANHGG---IRGWNVT 526 (838)
Q Consensus 508 g~~l~S~S~Dgt---IrlWdl~ 526 (838)
++.+++++.+.+ |.+|+..
T Consensus 293 g~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 293 GKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp TEEEEEEEETTEEEEEEEETTC
T ss_pred CEEEEEEcCCCCCCeEEEEcCC
Confidence 778888887755 5555543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-13 Score=154.49 Aligned_cols=176 Identities=11% Similarity=0.033 Sum_probs=114.3
Q ss_pred EEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCC-CCCCceeeecCCCCeEEEEEcCCCCEEE----EEeC
Q 003217 137 TIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGED-GTAPFKESVKGVSSVMCMVGDEASGVVW----SGHR 211 (838)
Q Consensus 137 ~l~~~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~g~~~V~~la~s~dg~~La----SGs~ 211 (838)
++......++++...+++||+......... .+...... ...+. ..+...++|.+++|+|+|++|+ ||+.
T Consensus 43 avs~~~~~l~~~~~dgv~v~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~v~~l~~spdg~~lav~~~sgs~ 116 (434)
T 2oit_A 43 AVSNKYGLVFAGGASGLQIFPTKNLLIQNK-----PGDDPNKIVDKVQG-LLVPMKFPIHHLALSCDNLTLSACMMSSEY 116 (434)
T ss_dssp EEETTTTEEEEEETTEEEEEEHHHHCCCCC-----TTCCTTCEEECCCC-EEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred EEecCCCEEEEECCCEEEEEEchHhhhhcc-----cccCcccccccCcc-ccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence 445556678777656699998743211100 00000000 00010 1122256799999999999999 8999
Q ss_pred CCcEEEEECCCCccC---CCCCcceeEEeccccccEEEEEEecC-CC-EEEeeCCCcEEEEECCCcceeeecCCCceeee
Q 003217 212 DGRIMCWKMNARLLD---SDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (838)
Q Consensus 212 DGtIrvWd~~~g~~~---~~~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~ 286 (838)
|++|++||+.++... ....+.....+.+|.+.|++|+|+|+ +. |+||+.||+|++||+.+........
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~------- 189 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL------- 189 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-------
T ss_pred CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-------
Confidence 999999998653000 00112234567899999999999998 56 7899999999999997642211110
Q ss_pred EEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 287 ~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
+| ...+.+++.++++..+++++ +++|++||++ ++...++
T Consensus 190 ------------~~----------~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~ 229 (434)
T 2oit_A 190 ------------PS----------TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVI 229 (434)
T ss_dssp ------------CG----------GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEE
T ss_pred ------------CC----------CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccccc
Confidence 11 34678889988888888877 6799999998 5554443
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.4e-12 Score=139.90 Aligned_cols=271 Identities=11% Similarity=0.045 Sum_probs=153.2
Q ss_pred EEEcCCCCEEEEEeC-CCc--EEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCc
Q 003217 197 MVGDEASGVVWSGHR-DGR--IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAI 272 (838)
Q Consensus 197 la~s~dg~~LaSGs~-DGt--IrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~ 272 (838)
.+|+|||+.|+.++. ||. |.+||+.++ +......+|...+.+++|+|||+ |+.++.++.|++||+.++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--------~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g 112 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--------VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL 112 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTC--------EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCC--------ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 689999999999887 774 778888886 44455566766666788999998 888999999999999876
Q ss_pred ceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEE----------------------e-
Q 003217 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS----------------------A- 329 (838)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s----------------------~- 329 (838)
+.............. . ....++++..++. .
T Consensus 113 ~~~~~~~~~~~~~~~--------------------------~-~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 113 EENVVYQVPAEWVGY--------------------------G-TWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp CEEEEEECCTTEEEE--------------------------E-EEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred cceeeeechhhcccc--------------------------c-ceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 543221111110000 0 0111233333321 1
Q ss_pred CCCcEEEEeccCccEEEEEecCCceEEeeeccc-CcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEE
Q 003217 330 GFLSFALWDARTRELLKVFNIDGQIENRVDMSL-LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR 408 (838)
Q Consensus 330 s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~ 408 (838)
....|.+||+.+++......... ....+.+++ ..... ........... ...++.
T Consensus 166 ~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~sp~dg~~l-------~~~~~~~~~~~-----------------~~~l~~ 220 (388)
T 3pe7_A 166 PCCRLMRVDLKTGESTVILQENQ-WLGHPIYRPYDDSTV-------AFCHEGPHDLV-----------------DARMWL 220 (388)
T ss_dssp CCEEEEEEETTTCCEEEEEEESS-CEEEEEEETTEEEEE-------EEEECSCTTTS-----------------SCSEEE
T ss_pred CcceEEEEECCCCceEEeecCCc-cccccEECCCCCCEE-------EEEEecCCCCC-----------------cceEEE
Confidence 12468899999998755443322 223333333 21111 00010000000 001222
Q ss_pred EeccC----ccccCC--CceEEEEEcCCCc-EEEEEC-CC----eEEEEcC-CCCe--eeEeecCCccE-----EEEEEc
Q 003217 409 VAAKG----GFGDDN--RRTEALTTSIDGM-IWTGGA-NG----LLLQWDP-NGNR--LQDFQYLPFAV-----QCLCTF 468 (838)
Q Consensus 409 v~~~g----~~~~~~--~~v~ala~S~dg~-l~Sgs~-Dg----tIrlWD~-~g~~--l~tl~~H~~~V-----~sls~d 468 (838)
+...+ .+..+. ..+..+++||||+ |+..+. ++ .|.+||+ +|+. +..+.++.... ..+++|
T Consensus 221 ~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spd 300 (388)
T 3pe7_A 221 INEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGD 300 (388)
T ss_dssp EETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEE
T ss_pred EeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccC
Confidence 22111 112222 2466788999998 654442 22 4999999 5653 33333311111 147889
Q ss_pred CCEEEEE---------eeCCeEEEEeCCCccccccccccc-----------CEEEEE--eCCCEEEEEc-CCCCeeeeec
Q 003217 469 GSQIWVG---------YMNGIVQVLDLEGNLLGGWVAHSS-----------PVIKMA--VGAGYIFTLA-NHGGIRGWNV 525 (838)
Q Consensus 469 G~~LasG---------s~DgtIrlWD~~g~~i~~l~gH~~-----------~V~sla--~dg~~l~S~S-~DgtIrlWdl 525 (838)
|++|+.. ..+..|++||+++..+..+..|.. .+.+++ +||+.|+..+ .++...+|.+
T Consensus 301 g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 301 GSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp ECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 9977753 446799999998665666776765 455444 6888877554 6888889886
Q ss_pred CC
Q 003217 526 TS 527 (838)
Q Consensus 526 ~s 527 (838)
..
T Consensus 381 ~l 382 (388)
T 3pe7_A 381 TL 382 (388)
T ss_dssp EC
T ss_pred EC
Confidence 54
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.5e-13 Score=160.51 Aligned_cols=316 Identities=8% Similarity=-0.026 Sum_probs=169.8
Q ss_pred EEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecC--CCCeEEEEEcCCCCEEEEEeC---------CC
Q 003217 145 LWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG--VSSVMCMVGDEASGVVWSGHR---------DG 213 (838)
Q Consensus 145 l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g--~~~V~~la~s~dg~~LaSGs~---------DG 213 (838)
++.+.|++|++||+.+...... .. .+. ...|.+++|||||++|++++. |+
T Consensus 30 ~~~~~d~~i~~~~~~~g~~~~~------------------~~-~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~ 90 (719)
T 1z68_A 30 LHQSADNNIVLYNIETGQSYTI------------------LS-NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTA 90 (719)
T ss_dssp EEECTTSCEEEEESSSCCEEEE------------------EC-HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred EEEcCCCCEEEEEcCCCcEEEE------------------Ec-cccccccceeeEEECCCCCeEEEEecCceeEEeecce
Confidence 3345689999999976543211 01 010 124889999999999999887 79
Q ss_pred cEEEEECCCCccCCCCCccee--EEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 214 RIMCWKMNARLLDSDDGFGEV--LSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 214 tIrvWd~~~g~~~~~~~~~~~--~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
+|++||+.++. .. ..+ ...|.+++|||||+ |++++ |++|++|++.+++.. .+.........
T Consensus 91 ~i~~~d~~~g~--------~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~-~l~~~~~~~~v--- 154 (719)
T 1z68_A 91 TYYIYDLSNGE--------FVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF-QITFNGRENKI--- 154 (719)
T ss_dssp EEEEEETTTTE--------ECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE-ECCCCCBTTTE---
T ss_pred EEEEEECCCCc--------cccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE-EEecCCCcCCe---
Confidence 99999999862 21 222 35688999999998 77765 789999999775432 12111100000
Q ss_pred eeceeecccceeccceeee-ecCCeEEEEEcCCCCEEEEeCC-----------------------------------CcE
Q 003217 291 ERSYIDLRSHLSVNGFSSI-LTSDIKNLLSDHSRAKVWSAGF-----------------------------------LSF 334 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~-~s~~v~~las~~~~~~V~s~s~-----------------------------------~tI 334 (838)
+.++ ...+..- .......++.++++..|+.++. .+|
T Consensus 155 ------~~g~--~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l 226 (719)
T 1z68_A 155 ------FNGI--PDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI 226 (719)
T ss_dssp ------EESS--CCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred ------Eccc--ccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence 0000 0000000 0001123445555555554431 167
Q ss_pred EEEeccCccEE---EE-----EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcE
Q 003217 335 ALWDARTRELL---KV-----FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAV 406 (838)
Q Consensus 335 ~lWD~~tg~~l---~~-----l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v 406 (838)
++||+.+++.+ .. +..+......+.++++....+ ....+.. ... .+
T Consensus 227 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~--------~~~~~~~-~~~-----------------~l 280 (719)
T 1z68_A 227 FIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCL--------QWLKRVQ-NVS-----------------VL 280 (719)
T ss_dssp EEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEE--------EEEESST-TEE-----------------EE
T ss_pred EEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEE--------EEecccc-CeE-----------------EE
Confidence 78998887642 11 112333333444444311100 0000000 000 01
Q ss_pred EEEe----c-cC----cc----ccCCCceE-----EEEEcCCCc-EEE--EECCC--eEEEEcCCCCeeeEeecCCccEE
Q 003217 407 RRVA----A-KG----GF----GDDNRRTE-----ALTTSIDGM-IWT--GGANG--LLLQWDPNGNRLQDFQYLPFAVQ 463 (838)
Q Consensus 407 ~~v~----~-~g----~~----~~~~~~v~-----ala~S~dg~-l~S--gs~Dg--tIrlWD~~g~~l~tl~~H~~~V~ 463 (838)
+.+. . .+ .+ ..+...+. .++++|||+ ++. +..++ .|.+||+.+...+.++.+...|.
T Consensus 281 ~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~ 360 (719)
T 1z68_A 281 SICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAI 360 (719)
T ss_dssp EEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEE
T ss_pred EEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEE
Confidence 1111 1 00 11 12333344 678999997 433 33454 68888885544667776666666
Q ss_pred EEE-EcCCEEEEEeeC-----CeEEEEeCC---Cc----ccc-cccccccCEEEEE--eCCCEEE-EEcCC--CCeeeee
Q 003217 464 CLC-TFGSQIWVGYMN-----GIVQVLDLE---GN----LLG-GWVAHSSPVIKMA--VGAGYIF-TLANH--GGIRGWN 524 (838)
Q Consensus 464 sls-~dG~~LasGs~D-----gtIrlWD~~---g~----~i~-~l~gH~~~V~sla--~dg~~l~-S~S~D--gtIrlWd 524 (838)
.+. .+|+.|+..+.+ +.++||.+. +. ++. .+.+|...+..+. +|+++++ +++.+ ..+.+|+
T Consensus 361 ~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 361 NIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp EEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred EEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence 542 288877776654 889999853 32 222 1344777777665 4677655 55544 4678898
Q ss_pred cCCCC
Q 003217 525 VTSPG 529 (838)
Q Consensus 525 l~s~~ 529 (838)
+.+..
T Consensus 441 ~~~g~ 445 (719)
T 1z68_A 441 GRTDQ 445 (719)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 76544
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-11 Score=132.92 Aligned_cols=254 Identities=9% Similarity=0.086 Sum_probs=150.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee-CCCcE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRD----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGI 264 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~D----GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtI 264 (838)
...+..++|+|+|++|++++.+ +.|++|+++... ..++.+.....+......+++ +|+ |++++ .+++|
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~----g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v 122 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK----GTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSI 122 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT----TEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEE
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC----CcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEE
Confidence 4567779999999999999986 799999986521 011223334445567778888 777 66554 68999
Q ss_pred EEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCc
Q 003217 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTR 342 (838)
Q Consensus 265 rvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg 342 (838)
.+|++.......... .. . ...+.+... .......+..+++++++..++.+. ++.|.+|++...
T Consensus 123 ~~~~~~~~g~~~~~~---~~-~---------~~~g~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~ 187 (361)
T 3scy_A 123 TVFPIGQDGALLPAS---DV-I---------EFKGSGPDK--ERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN 187 (361)
T ss_dssp EEEEBCTTSCBCSCS---EE-E---------ECCCCCSCT--TTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEEEeCCCCcCcccc---ee-E---------EccCCCCCc--cccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence 999996532111100 00 0 000000000 000022356788888888666554 468999987643
Q ss_pred cE------EEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccc
Q 003217 343 EL------LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (838)
Q Consensus 343 ~~------l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~ 416 (838)
.. +.... .. . ... .
T Consensus 188 ~~~~~~~~l~~~~---~~------------------~--~~~-------------------------------------~ 207 (361)
T 3scy_A 188 ANADNKEKFLTKG---TP------------------E--AFK-------------------------------------V 207 (361)
T ss_dssp CCTTTCCCCEEEE---EE------------------E--EEE-------------------------------------C
T ss_pred CCcccccceeecc---cc------------------c--cee-------------------------------------c
Confidence 21 00000 00 0 000 0
Q ss_pred cCCCceEEEEEcCCCc-EEEEE-CCCeEEEEcC-CCCe--eeEeec---CCccEEEEE--EcCCEEEEEeeC--CeEEEE
Q 003217 417 DDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP-NGNR--LQDFQY---LPFAVQCLC--TFGSQIWVGYMN--GIVQVL 484 (838)
Q Consensus 417 ~~~~~v~ala~S~dg~-l~Sgs-~DgtIrlWD~-~g~~--l~tl~~---H~~~V~sls--~dG~~LasGs~D--gtIrlW 484 (838)
.....+..++|+|||+ +++++ .+++|.+||+ +|+. ++.+.. +.....+++ +||++|+++..+ ++|++|
T Consensus 208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~ 287 (361)
T 3scy_A 208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIF 287 (361)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence 0112234688999997 66666 5899999999 5643 333332 333455554 589999877754 899999
Q ss_pred eCC---Cc--ccccccccccCEEEEE--eCCCEEEEEc-CCCCeeeeecC
Q 003217 485 DLE---GN--LLGGWVAHSSPVIKMA--VGAGYIFTLA-NHGGIRGWNVT 526 (838)
Q Consensus 485 D~~---g~--~i~~l~gH~~~V~sla--~dg~~l~S~S-~DgtIrlWdl~ 526 (838)
++. ++ .+..+.. ...+.+++ +||++|+.++ .+++|++|.+.
T Consensus 288 ~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 288 KVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 974 44 3333433 34556665 5788888776 67899998764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=134.91 Aligned_cols=206 Identities=12% Similarity=0.040 Sum_probs=128.8
Q ss_pred CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCccCCCCCcceeEEecc---------ccccEEEEEEecCCCE-EEee
Q 003217 191 VSSVMCMVGDEASGVVWSGH-RDGRIMCWKMNARLLDSDDGFGEVLSWQA---------HRGPVLSLCISSYGDL-WSGS 259 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs-~DGtIrvWd~~~g~~~~~~~~~~~~~l~g---------H~~~V~slafs~dG~L-~SgS 259 (838)
...+.+++++|+|++|++++ .+++|++|++.... ....+..+.. +...+.+++|+|||+| +++.
T Consensus 85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g-----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~ 159 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADG-----ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL 159 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTS-----CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCC-----CeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence 45678899999999999888 67999999996320 1122222211 1235899999999996 4666
Q ss_pred CCCcEEEEECCC-cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEE
Q 003217 260 EGGGIKIWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFAL 336 (838)
Q Consensus 260 ~DgtIrvWd~~~-~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~l 336 (838)
.++.|++|++.. +.... . ..+ .. . .......+++++++..++.+. ++.|.+
T Consensus 160 ~~~~v~~~~~~~~g~~~~-~-------~~~-------~~----~-------~g~~p~~~~~spdg~~l~v~~~~~~~v~v 213 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSE-Q-------SVL-------TM----E-------AGFGPRHLVFSPDGQYAFLAGELSSQIAS 213 (347)
T ss_dssp TTTEEEEEEECTTSCEEE-E-------EEE-------EC----C-------TTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCEEEEEEECCCCcEEE-e-------eeE-------Ec----C-------CCCCCceEEECCCCCEEEEEeCCCCEEEE
Confidence 789999999962 21110 0 000 00 0 012345678888888666643 467999
Q ss_pred EeccC--ccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCc
Q 003217 337 WDART--RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG 414 (838)
Q Consensus 337 WD~~t--g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~ 414 (838)
|++.. +++..... ..... . .
T Consensus 214 ~~~~~~~g~~~~~~~---------------------------~~~~~-~------------------------------~ 235 (347)
T 3hfq_A 214 LKYDTQTGAFTQLGI---------------------------VKTIP-A------------------------------D 235 (347)
T ss_dssp EEEETTTTEEEEEEE---------------------------EESSC-T------------------------------T
T ss_pred EEecCCCCceEEeee---------------------------eeecC-C------------------------------C
Confidence 98864 44311100 00000 0 0
Q ss_pred cccCCCceEEEEEcCCCc-E-EEEECCCeEEEEcCC--C--CeeeEeecCCccEEEEE--EcCCEEEEEee-CCeEEEEe
Q 003217 415 FGDDNRRTEALTTSIDGM-I-WTGGANGLLLQWDPN--G--NRLQDFQYLPFAVQCLC--TFGSQIWVGYM-NGIVQVLD 485 (838)
Q Consensus 415 ~~~~~~~v~ala~S~dg~-l-~Sgs~DgtIrlWD~~--g--~~l~tl~~H~~~V~sls--~dG~~LasGs~-DgtIrlWD 485 (838)
+ .....+..++++|||+ | +++..+++|.+||+. | +.+..+..|...+.+++ +||++|++++. ++.|.+|+
T Consensus 236 ~-~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 236 Y-TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp C-CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred C-CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 0 0112355788999997 5 455668999999984 4 45566666666666665 47899988876 48999994
Q ss_pred C
Q 003217 486 L 486 (838)
Q Consensus 486 ~ 486 (838)
+
T Consensus 315 ~ 315 (347)
T 3hfq_A 315 R 315 (347)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=6.7e-12 Score=135.00 Aligned_cols=222 Identities=12% Similarity=0.133 Sum_probs=137.3
Q ss_pred EEEEEeCCCcEEEEECCC-CccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCC-CcEEEEECC--CcceeeecC
Q 003217 205 VVWSGHRDGRIMCWKMNA-RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG-GGIKIWPWE--AIEKALSLK 279 (838)
Q Consensus 205 ~LaSGs~DGtIrvWd~~~-g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D-gtIrvWd~~--~~~~~~~~~ 279 (838)
++++++.|+.|++|+++. +. ........|...+.+++|+|+|+ |++++.+ ++|++|+++ ++....
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~--- 76 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGA-------LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF--- 76 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSC-------EEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE---
T ss_pred EEEeCCCCCeEEEEEECCCCc-------EEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee---
Confidence 444558899999999963 21 12233346778899999999998 7777766 999999986 322110
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEe
Q 003217 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENR 357 (838)
Q Consensus 280 ~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~ 357 (838)
...+ .. ...+..+++++++..++.++ ++.|.+||+.++........
T Consensus 77 -----~~~~---------~~-----------~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~------- 124 (343)
T 1ri6_A 77 -----AAES---------AL-----------PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV------- 124 (343)
T ss_dssp -----EEEE---------EC-----------SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE-------
T ss_pred -----cccc---------cc-----------CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccc-------
Confidence 0000 00 11345677778888776654 46799999853321111000
Q ss_pred eecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEE
Q 003217 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG 436 (838)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sg 436 (838)
.. ....+.+++++|||. ++++
T Consensus 125 -------------------~~---------------------------------------~~~~~~~~~~s~dg~~l~~~ 146 (343)
T 1ri6_A 125 -------------------VE---------------------------------------GLDGCHSANISPDNRTLWVP 146 (343)
T ss_dssp -------------------EC---------------------------------------CCTTBCCCEECTTSSEEEEE
T ss_pred -------------------cc---------------------------------------CCCCceEEEECCCCCEEEEe
Confidence 00 001133567889986 6766
Q ss_pred E-CCCeEEEEcC-C-CCeee----Eeec-CCccEEEEEE--cCCEEEEEe-eCCeEEEEeCC---Ccc--ccccc----c
Q 003217 437 G-ANGLLLQWDP-N-GNRLQ----DFQY-LPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLE---GNL--LGGWV----A 496 (838)
Q Consensus 437 s-~DgtIrlWD~-~-g~~l~----tl~~-H~~~V~sls~--dG~~LasGs-~DgtIrlWD~~---g~~--i~~l~----g 496 (838)
+ .++.|++||+ + ++... .+.. ....+.++++ +|++|++++ .++.|++||+. +++ ..... +
T Consensus 147 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~ 226 (343)
T 1ri6_A 147 ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN 226 (343)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred cCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc
Confidence 6 7899999999 4 54432 2333 2346666654 788776655 78999999984 322 22221 2
Q ss_pred c--ccCEEEEE--eCCCEEE-EEcCCCCeeeeecC
Q 003217 497 H--SSPVIKMA--VGAGYIF-TLANHGGIRGWNVT 526 (838)
Q Consensus 497 H--~~~V~sla--~dg~~l~-S~S~DgtIrlWdl~ 526 (838)
| ...+.+++ +++++++ +.+.|+.|++|++.
T Consensus 227 ~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 227 FSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 2 23455666 4677776 66789999999986
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.6e-11 Score=130.86 Aligned_cols=250 Identities=11% Similarity=0.034 Sum_probs=163.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCccCCCCCcceeEEec-cccccEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRD------------------------GRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVL 245 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~D------------------------GtIrvWd~~~g~~~~~~~~~~~~~l~-gH~~~V~ 245 (838)
-+.|.+|+++|+|+++++.+.+ ++|.+||..++ +....+. ++-....
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g--------~~~~~~~~~~~~~p~ 94 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA--------EILQSSGKNLFYLPH 94 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC--------CEEEEECTTTCSSEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC--------eEEeccCCCccCCce
Confidence 4589999999999999998888 47999999876 3344443 5566889
Q ss_pred EEEEecCCCE-EEeeCCCcEEEEECCCcc-eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcC-C
Q 003217 246 SLCISSYGDL-WSGSEGGGIKIWPWEAIE-KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-S 322 (838)
Q Consensus 246 slafs~dG~L-~SgS~DgtIrvWd~~~~~-~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~ 322 (838)
+|+++++|+| ++.+.++.|++|+.++.. ....+..... .+...+ .-.....+++++ +
T Consensus 95 gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~----------------~g~~~~----~~~~P~~ia~~~~~ 154 (329)
T 3fvz_A 95 GLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ----------------PGSDQN----HFCQPTDVAVEPST 154 (329)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTB----------------CCCSTT----CCSSEEEEEECTTT
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCC----------------CCCCcc----ccCCCcEEEEeCCC
Confidence 9999999996 577778999999986532 1111100000 000000 012356778887 5
Q ss_pred CCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceee
Q 003217 323 RAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (838)
Q Consensus 323 ~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~ 400 (838)
+..+++.+ ...|++|| .+|+++..+...+.. ...
T Consensus 155 g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~----------------------------~~~--------------- 190 (329)
T 3fvz_A 155 GAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSG----------------------------SSP--------------- 190 (329)
T ss_dssp CCEEEEECSSCCEEEEEC-TTSCEEEEECEECCS----------------------------SSC---------------
T ss_pred CeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCC----------------------------CCC---------------
Confidence 55555553 46799999 567766555321100 000
Q ss_pred ecCCcEEEEeccCccccCCCceEEEEEcCC-CcEEE-EECCCeEEEEcCC-CCeeeEee--cCCccEEEEEEc-------
Q 003217 401 GAADAVRRVAAKGGFGDDNRRTEALTTSID-GMIWT-GGANGLLLQWDPN-GNRLQDFQ--YLPFAVQCLCTF------- 468 (838)
Q Consensus 401 g~~~~v~~v~~~g~~~~~~~~v~ala~S~d-g~l~S-gs~DgtIrlWD~~-g~~l~tl~--~H~~~V~sls~d------- 468 (838)
...+......++++++ |.|+. ...++.|++||.+ |+.+.++. .+...+.++++.
T Consensus 191 --------------~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~ 256 (329)
T 3fvz_A 191 --------------RPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAV 256 (329)
T ss_dssp --------------CTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEE
T ss_pred --------------CCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEe
Confidence 0001123456888888 78654 4567899999995 99998885 355566666543
Q ss_pred -CCEEEEEeeCCeEEEEeCC-Ccccccc---cccccCEEEEEe--CCCEEEEEcCCCCeeeeecC
Q 003217 469 -GSQIWVGYMNGIVQVLDLE-GNLLGGW---VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 469 -G~~LasGs~DgtIrlWD~~-g~~i~~l---~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~ 526 (838)
|+..++.+.+.+|++||.. |+++..+ .+|...+.+|++ +|..+++.+.++.|++|++.
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 3322223345699999976 7877776 477888999885 56677788899999999975
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-10 Score=139.60 Aligned_cols=352 Identities=16% Similarity=0.247 Sum_probs=211.5
Q ss_pred ceeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 133 CFLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 133 ~~~~~l~~~-~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
..+++|..+ .+.||+|++++|.+||..+...... .. ....+ ..+. .+.|.++..|++| .||.|+.
T Consensus 263 ~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~--------~~--~~~~~--~~l~-~~~i~~i~~D~~g-~lWigt~ 328 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASY--------SS--NPVEN--GSLS-QRSVRSIFMDSQG-GMWLGTY 328 (795)
T ss_dssp SBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEE--------CC--CTTST--TSCS-SSCEEEEEECTTS-CEEEEES
T ss_pred CeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEE--------ec--CCCCC--CCCC-CCcEEEEEEeCCc-CEEEEEC
Confidence 457888887 4499999988999999765322110 00 00001 1233 5689999999876 5899999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEec---c-ccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQ---A-HRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~---g-H~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~ 287 (838)
++-|..|+..++. +....... + ....|.+|+.+++|.||.|+.++.|..|+..+..... +....
T Consensus 329 ~~Gl~~~~~~~~~------~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~-~~~~~----- 396 (795)
T 4a2l_A 329 FGGLNYYHPIRNR------FKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTS-YTLQE----- 396 (795)
T ss_dssp SSCEEEECGGGGS------SEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEE-ECCC------
T ss_pred CCCeEEeCCCccc------ceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEE-EecCC-----
Confidence 8888888876531 11111000 0 2457999999999999999999899999986532110 00000
Q ss_pred EEEeeceeecccceecccee-eeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecCCceEEeeecccCcc
Q 003217 288 LIVERSYIDLRSHLSVNGFS-SILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (838)
Q Consensus 288 ~~~~~s~~~l~~~~~~~~~~-~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (838)
.... .++...|.+++.++.+..||.|+. +++.++|..++++.. +..... .+..
T Consensus 397 ----------------~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~~~-----~l~~--- 451 (795)
T 4a2l_A 397 ----------------DESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FNQRNS-----QLVN--- 451 (795)
T ss_dssp ---------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-ECTTTS-----CCSC---
T ss_pred ----------------CCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-eecCCC-----CcCC---
Confidence 0000 112456788887766655898885 789999999887633 321100 0000
Q ss_pred cccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc-Ccccc----------CCCceEEEEEcCCCcEE
Q 003217 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-GGFGD----------DNRRTEALTTSIDGMIW 434 (838)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~-g~~~~----------~~~~v~ala~S~dg~l~ 434 (838)
..+. ++. .+....+|+|+..|+.++... +.+.. ....|.++..+++|.||
T Consensus 452 ----~~v~--------------~i~-~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW 512 (795)
T 4a2l_A 452 ----ENVY--------------AIL-PDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLW 512 (795)
T ss_dssp ----SCEE--------------EEE-ECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEE
T ss_pred ----CeeE--------------EEE-ECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEE
Confidence 0000 011 111234577777777777642 22211 12568889999999999
Q ss_pred EEECCCeEEEEcCCCCeeeEee-------cCCccEEEEEEcC-CEEEEEeeCCeEEEEeCCCccccccc----ccccCEE
Q 003217 435 TGGANGLLLQWDPNGNRLQDFQ-------YLPFAVQCLCTFG-SQIWVGYMNGIVQVLDLEGNLLGGWV----AHSSPVI 502 (838)
Q Consensus 435 Sgs~DgtIrlWD~~g~~l~tl~-------~H~~~V~sls~dG-~~LasGs~DgtIrlWD~~g~~i~~l~----gH~~~V~ 502 (838)
.|+.+| |.+||..+... .+. .+...|.++..|. ..||.|+.. .|..||..+.....+. ...+.|.
T Consensus 513 igt~~G-l~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~ 589 (795)
T 4a2l_A 513 IGGEEG-LSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVY 589 (795)
T ss_dssp EEESSC-EEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEE
T ss_pred EEeCCc-eEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheE
Confidence 999855 88999843333 332 2346799998864 378888876 7889998744322221 2345799
Q ss_pred EEEeCCCEEEEEcCCCCeeeeecCC-----CCCCchhhhhhhhccccccccccceeeEEEEE
Q 003217 503 KMAVGAGYIFTLANHGGIRGWNVTS-----PGPLDSILCKELAGKEFLYTRMENLKILAGTW 559 (838)
Q Consensus 503 sla~dg~~l~S~S~DgtIrlWdl~s-----~~~~d~~~~~~l~~r~~~y~~~~~~~i~~~tw 559 (838)
++..|.+.-++.++++.|..|+..+ +...+++...++..........+. +++++-
T Consensus 590 ~i~~d~~g~lWi~t~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~--l~~g~~ 649 (795)
T 4a2l_A 590 GILEDSFGRLWLSTNRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQ--MYFGGI 649 (795)
T ss_dssp EEEECTTSCEEEEETTEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSC--EEEEET
T ss_pred EEEECCCCCEEEEcCCceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCe--EEEecC
Confidence 9988765545555577888888543 333455544444333333333444 777773
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-11 Score=136.13 Aligned_cols=238 Identities=10% Similarity=0.046 Sum_probs=148.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCccCCCCCcceeEEecccc--ccEEEEEEecCCC---EEEee------
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMN-ARLLDSDDGFGEVLSWQAHR--GPVLSLCISSYGD---LWSGS------ 259 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~-~g~~~~~~~~~~~~~l~gH~--~~V~slafs~dG~---L~SgS------ 259 (838)
..+..++++|+|++|++++.+ .|.+|++. ++ +...... |. +.+.+++|+|||+ +++++
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g--------~~~~~~~-~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~ 109 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT--------EIVHEAS-HPIGGHPRANDADTNTRAIFLLAAKQPPYAV 109 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT--------EEEEEEE-EECCSSGGGGCTTSCCEEEEEEECSSTTCCE
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCC--------CEEEeeE-eecCCCCccEEECCCCCEEEEEEecCCccee
Confidence 357789999999999999998 99999987 55 2222211 21 2345689999998 34553
Q ss_pred -------CCCcEEEEECCC-cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-
Q 003217 260 -------EGGGIKIWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG- 330 (838)
Q Consensus 260 -------~DgtIrvWd~~~-~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s- 330 (838)
.++++++|++.. ++....+ ..+ .+ . ....+..+++++++..++++.
T Consensus 110 ~~~~~~~~~g~v~v~~~~~~g~~~~~~-------~~~----------~~--~------~~~~~~~~~~spdG~~l~~~~~ 164 (365)
T 1jof_A 110 YANPFYKFAGYGNVFSVSETGKLEKNV-------QNY----------EY--Q------ENTGIHGMVFDPTETYLYSADL 164 (365)
T ss_dssp EEEEESSSCCEEEEEEECTTCCEEEEE-------EEE----------EC--C------TTCCEEEEEECTTSSEEEEEET
T ss_pred ccceeecCCceEEEEccCCCCcCcceE-------eeE----------Ee--C------CCCcceEEEECCCCCEEEEEcC
Confidence 799999999863 2211000 000 00 0 023466778888888777654
Q ss_pred -CCcEEEEecc-CccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEE
Q 003217 331 -FLSFALWDAR-TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR 408 (838)
Q Consensus 331 -~~tI~lWD~~-tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~ 408 (838)
.+.|++||+. +|++..... ..
T Consensus 165 ~~~~v~~~~~~~~g~~~~~~~---------------------------~~------------------------------ 187 (365)
T 1jof_A 165 TANKLWTHRKLASGEVELVGS---------------------------VD------------------------------ 187 (365)
T ss_dssp TTTEEEEEEECTTSCEEEEEE---------------------------EE------------------------------
T ss_pred CCCEEEEEEECCCCCEEEeee---------------------------Ee------------------------------
Confidence 4689999998 676421100 00
Q ss_pred EeccCccccCCCceEEEEEcCCCc-EEEEEC-CCeEEEEcC---CCCee---eEee-------cCCc------cEEEEE-
Q 003217 409 VAAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NGLLLQWDP---NGNRL---QDFQ-------YLPF------AVQCLC- 466 (838)
Q Consensus 409 v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~-DgtIrlWD~---~g~~l---~tl~-------~H~~------~V~sls- 466 (838)
+..+...+..++++|||+ +++++. +++|.+|+. +|+.. +++. +|.. .+..++
T Consensus 188 ------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 261 (365)
T 1jof_A 188 ------APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp ------CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred ------cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEE
Confidence 000012245678999996 666664 689999975 36542 2222 2232 466555
Q ss_pred --EcCCEEEEEeeCC------eEEEEeCC--Ccccc---cccccccCEE--EEEe---CCCEEEEEcCC-CCeeeeecCC
Q 003217 467 --TFGSQIWVGYMNG------IVQVLDLE--GNLLG---GWVAHSSPVI--KMAV---GAGYIFTLANH-GGIRGWNVTS 527 (838)
Q Consensus 467 --~dG~~LasGs~Dg------tIrlWD~~--g~~i~---~l~gH~~~V~--sla~---dg~~l~S~S~D-gtIrlWdl~s 527 (838)
+||++|+++..+. +|++||+. |++.. ....+...+. ++.+ ||++|++++.+ ++|++|++..
T Consensus 262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred ECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 5899998877533 89999974 55432 1222333233 3457 79999988764 8999999753
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.6e-10 Score=123.76 Aligned_cols=227 Identities=9% Similarity=0.077 Sum_probs=132.0
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCccCCCCCcceeEEecc--------ccccEEEEEEecCCC-EE-EeeC
Q 003217 192 SSVMCMVGDEASGVVWSGH-RDGRIMCWKMNARLLDSDDGFGEVLSWQA--------HRGPVLSLCISSYGD-LW-SGSE 260 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs-~DGtIrvWd~~~g~~~~~~~~~~~~~l~g--------H~~~V~slafs~dG~-L~-SgS~ 260 (838)
.....+++ ++++|++++ .+++|.+|++..... ...........+ +...+.+++|+|||+ |+ ++..
T Consensus 100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 175 (361)
T 3scy_A 100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA--LLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG 175 (361)
T ss_dssp SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC--BCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc--CcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence 34566777 778777776 578999999975310 000011111111 233468999999998 65 5556
Q ss_pred CCcEEEEECCCcce----e-eecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCc
Q 003217 261 GGGIKIWPWEAIEK----A-LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLS 333 (838)
Q Consensus 261 DgtIrvWd~~~~~~----~-~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~t 333 (838)
+++|++|+++.... . +.... ..... .+ ........+++++++..++.+. +++
T Consensus 176 ~~~v~v~~~~~~~~~~~~~~l~~~~---~~~~~-------~~-----------~~~~~~~~~~~spdg~~l~v~~~~~~~ 234 (361)
T 3scy_A 176 TDQIHKFNINPNANADNKEKFLTKG---TPEAF-------KV-----------APGSGPRHLIFNSDGKFAYLINEIGGT 234 (361)
T ss_dssp TTEEEEEEECTTCCTTTCCCCEEEE---EEEEE-------EC-----------CTTCCEEEEEECTTSSEEEEEETTTCE
T ss_pred CCEEEEEEEcCCCCcccccceeecc---cccce-------ec-----------CCCCCCeEEEEcCCCCEEEEEcCCCCe
Confidence 89999999865321 0 11000 00000 00 0022356788888888776655 578
Q ss_pred EEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccC
Q 003217 334 FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG 413 (838)
Q Consensus 334 I~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g 413 (838)
|.+||+.++++...... ..
T Consensus 235 v~v~~~~~g~~~~~~~~---------------------------~~---------------------------------- 253 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTV---------------------------AA---------------------------------- 253 (361)
T ss_dssp EEEEEEETTEEEEEEEE---------------------------ES----------------------------------
T ss_pred EEEEEecCCceEEeEEE---------------------------ec----------------------------------
Confidence 99999987754211100 00
Q ss_pred ccccCCCceEEEEEcCCCc-EEEEEC--CCeEEEEcCC---CC--eeeEeecCCccEEEE--EEcCCEEEEEe-eCCeEE
Q 003217 414 GFGDDNRRTEALTTSIDGM-IWTGGA--NGLLLQWDPN---GN--RLQDFQYLPFAVQCL--CTFGSQIWVGY-MNGIVQ 482 (838)
Q Consensus 414 ~~~~~~~~v~ala~S~dg~-l~Sgs~--DgtIrlWD~~---g~--~l~tl~~H~~~V~sl--s~dG~~LasGs-~DgtIr 482 (838)
...+...+..++++|||+ |+++.. +++|.+|++. |+ .+..+.. ...+.++ ++||++|++++ .++.|.
T Consensus 254 -~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~ 331 (361)
T 3scy_A 254 -DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQ 331 (361)
T ss_dssp -CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEE
T ss_pred -CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEE
Confidence 001112235688999998 655554 4899999983 44 4444443 3445555 45799999888 579999
Q ss_pred EEe--CC-Ccccccc-cccccCEEEEEe
Q 003217 483 VLD--LE-GNLLGGW-VAHSSPVIKMAV 506 (838)
Q Consensus 483 lWD--~~-g~~i~~l-~gH~~~V~sla~ 506 (838)
+|+ .+ |++.... ..|...+.||.+
T Consensus 332 v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 332 IFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred EEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 964 44 5543332 345566777764
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-10 Score=122.91 Aligned_cols=221 Identities=14% Similarity=0.085 Sum_probs=139.6
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEee-CCCcEEEEE
Q 003217 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~-~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~DgtIrvWd 268 (838)
.....+++|+|+|+ ++|++..++.|.+|+..+ . ...+..+...+.+|+++++|+||.+. .++.|.+||
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~---------~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG---------Q-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS---------C-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCC---------C-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 34567899999998 899999999999999987 3 45566778889999999999976554 568999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-C---------------
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-L--------------- 332 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~--------------- 332 (838)
..+++....... ..+ .+...+..++.++++..+++... +
T Consensus 97 ~~~g~~~~~~~~----------------------~~~---~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~ 151 (296)
T 3e5z_A 97 EPGGEWESIADS----------------------FEG---KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELP 151 (296)
T ss_dssp STTCCEEEEECE----------------------ETT---EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSS
T ss_pred CCCCcEEEEeec----------------------cCC---CCCCCCCCEEECCCCCEEEECCccccccccccccccccCC
Confidence 865432111000 000 00112334566665543332110 1
Q ss_pred --cEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEe
Q 003217 333 --SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA 410 (838)
Q Consensus 333 --tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~ 410 (838)
.|..+|.. +++ ..
T Consensus 152 ~~~l~~~~~~-g~~--------------------------------------------------------------~~-- 166 (296)
T 3e5z_A 152 GRWVFRLAPD-GTL--------------------------------------------------------------SA-- 166 (296)
T ss_dssp SCEEEEECTT-SCE--------------------------------------------------------------EE--
T ss_pred CcEEEEECCC-CCE--------------------------------------------------------------EE--
Confidence 11111111 110 00
Q ss_pred ccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCC--CCe---eeEeecCCccEEEEEEc--CCEEEEEeeCCeEE
Q 003217 411 AKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN--GNR---LQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQ 482 (838)
Q Consensus 411 ~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~--g~~---l~tl~~H~~~V~sls~d--G~~LasGs~DgtIr 482 (838)
+..+......++++|||. +++.+.++.|.+||+. |+. .+.+..+...+.+++.| |+ ||+++ ++.|.
T Consensus 167 ----~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~-~~~v~ 240 (296)
T 3e5z_A 167 ----PIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA-GDGVH 240 (296)
T ss_dssp ----EECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE-TTEEE
T ss_pred ----eecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc-CCeEE
Confidence 011223345688999997 5556667899999983 554 34443344455566664 54 66666 89999
Q ss_pred EEeCCCcccccccccccCEEEEEe---CCCEEEEEcCCC
Q 003217 483 VLDLEGNLLGGWVAHSSPVIKMAV---GAGYIFTLANHG 518 (838)
Q Consensus 483 lWD~~g~~i~~l~gH~~~V~sla~---dg~~l~S~S~Dg 518 (838)
+||.+|+++..+..+.. +.++++ +++.|+.++.++
T Consensus 241 ~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 241 VLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp EECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred EECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence 99999988888888877 877765 456777777663
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=5.6e-11 Score=144.09 Aligned_cols=287 Identities=9% Similarity=-0.002 Sum_probs=166.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccccc-----EEEEEEecCCC-EEEeeCC-----
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGP-----VLSLCISSYGD-LWSGSEG----- 261 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~-----V~slafs~dG~-L~SgS~D----- 261 (838)
...+++|+|||++|+++ ||+|++||+.++ ++...+.+|... ..+++|||||+ |++++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r 87 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYG--------NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR 87 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTC--------CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCC--------ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEE
Confidence 45678999999999997 999999999997 455667777643 34578999998 7777776
Q ss_pred ----CcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEE
Q 003217 262 ----GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALW 337 (838)
Q Consensus 262 ----gtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lW 337 (838)
+.+.+||+++++.. .+.. + ...+...+.+++|.+|+.+.+..|.+|
T Consensus 88 ~~~~~~~~~~d~~~~~~~-~l~~-------------------~----------~~~~~~~~~SPdG~~la~~~~~~i~~~ 137 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQLI-TEER-------------------I----------PNNTQWVTWSPVGHKLAYVWNNDIYVK 137 (740)
T ss_dssp SCEEEEEEEEETTTTEEC-CSSC-------------------C----------CTTEEEEEECSSTTCEEEEETTEEEEE
T ss_pred EccceEEEEEECCCCcEE-Eccc-------------------C----------CCcceeeEECCCCCEEEEEECCeEEEE
Confidence 45569999875421 1111 0 234667788899998888888899999
Q ss_pred eccCccEEEEEecCCc---eEE----------------eeecccCccccc----ccc-eeeEEEecCCCC----cceeee
Q 003217 338 DARTRELLKVFNIDGQ---IEN----------------RVDMSLLPDFAM----EDE-FKTKIVTSSKKD----KAQSSF 389 (838)
Q Consensus 338 D~~tg~~l~~l~~~~~---~~~----------------~~~~s~~~~~~~----~~~-~~~~~~s~~~~~----~~~~s~ 389 (838)
|+.+++..+ +..++. +.+ .+.++++....+ ++. ++.+.+...... .....+
T Consensus 138 ~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (740)
T 4a5s_A 138 IEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (740)
T ss_dssp SSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred ECCCCceEE-EcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence 999988644 222221 100 123343332211 111 111111000000 000011
Q ss_pred eEeecCcceeeecCCc---EEEEecc----C---c---c------ccCCCceEEEEEcCCCcE-EEEE----CCCeEEEE
Q 003217 390 GFFQRSRNAIMGAADA---VRRVAAK----G---G---F------GDDNRRTEALTTSIDGMI-WTGG----ANGLLLQW 445 (838)
Q Consensus 390 ~~~~~~~~~~~g~~~~---v~~v~~~----g---~---~------~~~~~~v~ala~S~dg~l-~Sgs----~DgtIrlW 445 (838)
.+.. .|..+. +..+... + . + ..+...+..+++||||++ +... .+..|++|
T Consensus 217 ~yp~------~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~ 290 (740)
T 4a5s_A 217 PYPK------AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDIC 290 (740)
T ss_dssp ECCB------TTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEE
T ss_pred cCCC------CcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEE
Confidence 1111 111111 1111111 1 0 1 125556788999999984 3332 23379999
Q ss_pred cC-CCC----eeeE--e--ecCCccEE-------EEEEcCCEEE-EEee-C--CeEEEEeCCCcccccccccccCEEEEE
Q 003217 446 DP-NGN----RLQD--F--QYLPFAVQ-------CLCTFGSQIW-VGYM-N--GIVQVLDLEGNLLGGWVAHSSPVIKMA 505 (838)
Q Consensus 446 D~-~g~----~l~t--l--~~H~~~V~-------sls~dG~~La-sGs~-D--gtIrlWD~~g~~i~~l~gH~~~V~sla 505 (838)
|+ +|+ |... + .+|..+|. .+++||+.|+ ..+. + ..|.+||+.+.....++.....|..+.
T Consensus 291 d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~ 370 (740)
T 4a5s_A 291 DYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE 370 (740)
T ss_dssp EEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEE
T ss_pred ECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEE
Confidence 99 677 4433 2 45665554 3467899776 6654 3 478899998766556665566677654
Q ss_pred -eCCCEEE-EEcC----CCCeeeeecC
Q 003217 506 -VGAGYIF-TLAN----HGGIRGWNVT 526 (838)
Q Consensus 506 -~dg~~l~-S~S~----DgtIrlWdl~ 526 (838)
+|++.++ +++. -+...+|.+.
T Consensus 371 ~~d~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 371 ALTSDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp EECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred EEeCCEEEEEEecCCCCCceeEEEEEE
Confidence 7877665 4443 2445667654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-10 Score=136.79 Aligned_cols=103 Identities=15% Similarity=0.012 Sum_probs=69.7
Q ss_pred eEEEEEcCCCcE-EEEECCC--eEEEEcC-CCCeeeEeecCCcc--------EEEEEE--cCCEEEEEeeCCeEEEE--e
Q 003217 422 TEALTTSIDGMI-WTGGANG--LLLQWDP-NGNRLQDFQYLPFA--------VQCLCT--FGSQIWVGYMNGIVQVL--D 485 (838)
Q Consensus 422 v~ala~S~dg~l-~Sgs~Dg--tIrlWD~-~g~~l~tl~~H~~~--------V~sls~--dG~~LasGs~DgtIrlW--D 485 (838)
+..++++|||++ +++..++ .|.+||+ +|+..+...++... +.++++ +|+.+++++. ++++|| |
T Consensus 244 ~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 244 IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp EEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred EcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 446778999985 5565677 6777787 55554433333322 344544 6788888888 999999 6
Q ss_pred CCCcccccccccccCEEEE-EeCCCEEE--EEcCCCCeeeeec
Q 003217 486 LEGNLLGGWVAHSSPVIKM-AVGAGYIF--TLANHGGIRGWNV 525 (838)
Q Consensus 486 ~~g~~i~~l~gH~~~V~sl-a~dg~~l~--S~S~DgtIrlWdl 525 (838)
+++..++.+..|...|..+ +++++.++ +.+.+....+|.+
T Consensus 323 ~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 323 PESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp TTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 6665678888898888888 78777543 5566665566654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-10 Score=127.80 Aligned_cols=246 Identities=7% Similarity=0.002 Sum_probs=141.1
Q ss_pred cCCEEEEecCCCEEEEeCC-CCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCC--EEEEEe-------
Q 003217 141 TEEQLWAGGENGLRVWNLK-ELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG--VVWSGH------- 210 (838)
Q Consensus 141 ~~~~l~~g~d~~vrvWd~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~--~LaSGs------- 210 (838)
+++.|+++..++|++||+. +...... ..... .+.+.+++++|+|+ ++++++
T Consensus 50 dg~~l~~~~~~~v~~~~~~~~g~~~~~-----------------~~~~~--~g~~~~~~~spdg~~l~~~~~~~~~~~~~ 110 (365)
T 1jof_A 50 ERKNIYGAAMKKWSSFAVKSPTEIVHE-----------------ASHPI--GGHPRANDADTNTRAIFLLAAKQPPYAVY 110 (365)
T ss_dssp TSSEEEEEEBTEEEEEEEEETTEEEEE-----------------EEEEC--CSSGGGGCTTSCCEEEEEEECSSTTCCEE
T ss_pred CCCEEEEEccceEEEEEECCCCCEEEe-----------------eEeec--CCCCccEEECCCCCEEEEEEecCCcceec
Confidence 4556777544499999986 4321100 00001 12345688999999 466664
Q ss_pred ------CCCcEEEEECCC-CccCCCCCcceeEEec----cccccEEEEEEecCCC-EEEee-CCCcEEEEECC-Ccceee
Q 003217 211 ------RDGRIMCWKMNA-RLLDSDDGFGEVLSWQ----AHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWE-AIEKAL 276 (838)
Q Consensus 211 ------~DGtIrvWd~~~-g~~~~~~~~~~~~~l~----gH~~~V~slafs~dG~-L~SgS-~DgtIrvWd~~-~~~~~~ 276 (838)
.+|++++|++.. + +....+. .|...+.+++|+|||+ |+++. .+++|++|+++ +++...
T Consensus 111 ~~~~~~~~g~v~v~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~ 182 (365)
T 1jof_A 111 ANPFYKFAGYGNVFSVSETG--------KLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL 182 (365)
T ss_dssp EEEESSSCCEEEEEEECTTC--------CEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred cceeecCCceEEEEccCCCC--------cCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE
Confidence 699999999974 3 2222222 2557899999999998 66554 46899999996 432110
Q ss_pred ecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEecc--CccEEEEEecCC
Q 003217 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDAR--TRELLKVFNIDG 352 (838)
Q Consensus 277 ~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~--tg~~l~~l~~~~ 352 (838)
. ..+ .+.. +....+.+++++++..++.+. +++|.+|+.. +|++...+..
T Consensus 183 ~--------~~~-------~~~~----------~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~-- 235 (365)
T 1jof_A 183 V--------GSV-------DAPD----------PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS-- 235 (365)
T ss_dssp E--------EEE-------ECSS----------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE--
T ss_pred e--------eeE-------ecCC----------CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccce--
Confidence 0 000 0000 012366788888888887765 3678888764 5654211100
Q ss_pred ceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE-EcCCC
Q 003217 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT-TSIDG 431 (838)
Q Consensus 353 ~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala-~S~dg 431 (838)
+...... ..++.. .+. ....+..++ ++|||
T Consensus 236 ------------------------~~~~~~~---------------~~g~~~---------~~~-~~~~~~~i~~~spdG 266 (365)
T 1jof_A 236 ------------------------FPLIPPG---------------IPDRDP---------ETG-KGLYRADVCALTFSG 266 (365)
T ss_dssp ------------------------EESSCTT---------------CCCBCT---------TTS-SBSEEEEEEEECTTS
T ss_pred ------------------------EEcCCCC---------------cCCccc---------ccc-cccccccEEEECCCC
Confidence 0000000 000000 000 001355788 99999
Q ss_pred c-EEEEEC-CC-----eEEEEcC--CCCeee---EeecCCccE--EEEEE---cCCEEEEEee-CCeEEEEeCCCc
Q 003217 432 M-IWTGGA-NG-----LLLQWDP--NGNRLQ---DFQYLPFAV--QCLCT---FGSQIWVGYM-NGIVQVLDLEGN 489 (838)
Q Consensus 432 ~-l~Sgs~-Dg-----tIrlWD~--~g~~l~---tl~~H~~~V--~sls~---dG~~LasGs~-DgtIrlWD~~g~ 489 (838)
+ |+++.. ++ +|++|++ +|+... .+..+...+ .++++ ||++|++++. +++|+||+++++
T Consensus 267 ~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 267 KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 7 665543 23 8999998 365443 132233222 24678 7999999886 489999998754
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.3e-09 Score=128.27 Aligned_cols=355 Identities=15% Similarity=0.247 Sum_probs=209.9
Q ss_pred ceeEEEEecCC-EEEEecC-CCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 133 CFLRTIVCTEE-QLWAGGE-NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 133 ~~~~~l~~~~~-~l~~g~d-~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
..+++|..+.+ .||+|++ ++|.++|..+....... .... .+.. ....+ ..+. .+.|.++..|++| .||.|+
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~-~~~f-~~~~-~~~~~--~~l~-~~~v~~i~~D~~g-~lWigt 330 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPE-QIRF-EFIR-EGDNN--YSLS-NASARYIFQDSFN-NIWIGT 330 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTCC----------C-EEEC-BCSST--TSBS-SSCEEEEEECSSC-CEEEEE
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeee-cccc-cccc-CCCCC--CCCC-CCeEEEEEEeCCC-CEEEEe
Confidence 45778888644 9999988 89999998653211100 0000 0000 00000 1233 5689999999876 589999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEE------ec-cccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCce
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLS------WQ-AHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEER 283 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~------l~-gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~ 283 (838)
.++-|..++..++. +..... -. -....|.+|+.+++|.||.|+.++.|.+|+..+.. +......
T Consensus 331 ~~~Gl~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~- 401 (781)
T 3v9f_A 331 WGGGINFISNAPPT------FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRV--AIYNKEN- 401 (781)
T ss_dssp BSSCEEEECSSCCS------CEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEE--EECC----
T ss_pred cCCeEEEeCCCCCc------ceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCe--EEEccCC-
Confidence 88888888876641 111100 00 02357999999999999999988889999975421 1111000
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecCCceEEeeeccc
Q 003217 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSL 362 (838)
Q Consensus 284 ~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~ 362 (838)
...+...+.+++.++ ...||.++. +++..+|..++++. .+.... ...
T Consensus 402 -----------------------~~~~~~~v~~i~~d~-~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~-------~~~ 449 (781)
T 3v9f_A 402 -----------------------RELLSNSVLCSLKDS-EGNLWFGTYLGNISYYNTRLKKFQ-IIELEK-------NEL 449 (781)
T ss_dssp -------------------------CCCSBEEEEEECT-TSCEEEEETTEEEEEECSSSCEEE-ECCSTT-------TCC
T ss_pred -----------------------CCCCCcceEEEEECC-CCCEEEEeccCCEEEEcCCCCcEE-EeccCC-------CCC
Confidence 011244577777764 457888885 78999999887653 221100 000
Q ss_pred CcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc-Ccccc----C-----CCceEEEEEcCCCc
Q 003217 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-GGFGD----D-----NRRTEALTTSIDGM 432 (838)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~-g~~~~----~-----~~~v~ala~S~dg~ 432 (838)
..+. ++ +.+....+|+|+..|+.++... +.+.. . ...|.++..+++|.
T Consensus 450 -------~~v~--------------~i-~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~ 507 (781)
T 3v9f_A 450 -------LDVR--------------VF-YEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR 507 (781)
T ss_dssp -------CCEE--------------EE-EECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC
T ss_pred -------CeEE--------------EE-EECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC
Confidence 0000 00 0111234577777777777642 22211 1 35688899999999
Q ss_pred EEEEECCCeEEEEcCCCCeeeEeec----CCccEEEEEEcC-CEEEEEeeCCeEEEEeCCCccccccc----ccccCEEE
Q 003217 433 IWTGGANGLLLQWDPNGNRLQDFQY----LPFAVQCLCTFG-SQIWVGYMNGIVQVLDLEGNLLGGWV----AHSSPVIK 503 (838)
Q Consensus 433 l~Sgs~DgtIrlWD~~g~~l~tl~~----H~~~V~sls~dG-~~LasGs~DgtIrlWD~~g~~i~~l~----gH~~~V~s 503 (838)
||.|+.++-|..+|..+..++.+.. ....|.++..|. ..||.|+.+|.|..||.++.....+. .....|.+
T Consensus 508 lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~ 587 (781)
T 3v9f_A 508 FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRA 587 (781)
T ss_dssp EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCCE
T ss_pred EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCceEEE
Confidence 9999974448889986555555542 245789998864 37898888665599998744333332 23356888
Q ss_pred EEeCCCEEEEEcCCCCeeeeecCC-----CCCCchhhhhhhhccccccccccceeeEEEEE
Q 003217 504 MAVGAGYIFTLANHGGIRGWNVTS-----PGPLDSILCKELAGKEFLYTRMENLKILAGTW 559 (838)
Q Consensus 504 la~dg~~l~S~S~DgtIrlWdl~s-----~~~~d~~~~~~l~~r~~~y~~~~~~~i~~~tw 559 (838)
+..|.+..++.++++.|..++... +...+++...++..........+. +++++.
T Consensus 588 i~~d~~g~lW~~t~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~--l~~g~~ 646 (781)
T 3v9f_A 588 ISEDKNGNIWASTNTGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGL--IYFGSI 646 (781)
T ss_dssp EEECSSSCEEEECSSCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSC--EEEEET
T ss_pred EEECCCCCEEEEcCCceEEEECCCCceEEecccCCccccccccCceEECCCCE--EEEECC
Confidence 887765555566677788887543 333455554444433333333444 777773
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=7.5e-10 Score=120.40 Aligned_cols=206 Identities=11% Similarity=-0.024 Sum_probs=130.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe---------ccccccEEEEEEec-CCCEE-Eee-
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW---------QAHRGPVLSLCISS-YGDLW-SGS- 259 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l---------~gH~~~V~slafs~-dG~L~-SgS- 259 (838)
.....++++++|+++++.+.++.|++|+.++.. ..+..+ .+|-....+|+|+| +|.|+ +.+
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~-------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~ 163 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE-------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY 163 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECTTCSS-------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeCCCCe-------EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC
Confidence 467889999999999999999999999987631 133444 35556789999999 78865 555
Q ss_pred CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEE
Q 003217 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALW 337 (838)
Q Consensus 260 ~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lW 337 (838)
.++.|++|+.+. .....+.. .+.........-.....+++++++..|+.+. ...|++|
T Consensus 164 ~~~~I~~~~~~g-~~~~~~~~-------------------~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~ 223 (329)
T 3fvz_A 164 CNSRIVQFSPSG-KFVTQWGE-------------------ESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCF 223 (329)
T ss_dssp SCCEEEEECTTS-CEEEEECE-------------------ECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCeEEEEcCCC-CEEEEecc-------------------CCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEE
Confidence 589999999643 21111100 0000000000012345677877755565554 4679999
Q ss_pred eccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCcccc
Q 003217 338 DARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGD 417 (838)
Q Consensus 338 D~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~ 417 (838)
|..+|+++.++.....-
T Consensus 224 ~~~~G~~~~~~~~~~~~--------------------------------------------------------------- 240 (329)
T 3fvz_A 224 KTDTKEFVREIKHASFG--------------------------------------------------------------- 240 (329)
T ss_dssp ETTTCCEEEEECCTTTT---------------------------------------------------------------
T ss_pred ECCCCcEEEEEeccccC---------------------------------------------------------------
Confidence 99999987766321100
Q ss_pred CCCceEEEEEcC------CCcE-EEEECCCeEEEEcC-CCCeeeEee---cCCccEEEEEE--cCCEEEEEeeCCeEEEE
Q 003217 418 DNRRTEALTTSI------DGMI-WTGGANGLLLQWDP-NGNRLQDFQ---YLPFAVQCLCT--FGSQIWVGYMNGIVQVL 484 (838)
Q Consensus 418 ~~~~v~ala~S~------dg~l-~Sgs~DgtIrlWD~-~g~~l~tl~---~H~~~V~sls~--dG~~LasGs~DgtIrlW 484 (838)
..+.+++++| +|.+ ++.+.+.+|++||. +|+.+.++. ++......|++ +|..+++...++.|++|
T Consensus 241 --~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~ 318 (329)
T 3fvz_A 241 --RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKF 318 (329)
T ss_dssp --TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEE
T ss_pred --CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEE
Confidence 0001112222 3332 23344568999998 799988874 67777888876 56555566678999999
Q ss_pred eCCCc
Q 003217 485 DLEGN 489 (838)
Q Consensus 485 D~~g~ 489 (838)
+++++
T Consensus 319 ~~~~~ 323 (329)
T 3fvz_A 319 TLTEK 323 (329)
T ss_dssp EEEEC
T ss_pred eCCcc
Confidence 98754
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.27 E-value=6.8e-10 Score=122.78 Aligned_cols=79 Identities=10% Similarity=0.019 Sum_probs=58.7
Q ss_pred EEEcCCCc-EEEEEC-----------CCeEEEEcC-CCCeeeEeecCCccEEEE--EEcCCEEEEEeeCCeEEEEeCC-C
Q 003217 425 LTTSIDGM-IWTGGA-----------NGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-G 488 (838)
Q Consensus 425 la~S~dg~-l~Sgs~-----------DgtIrlWD~-~g~~l~tl~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g 488 (838)
+++++|+. ++.+.. .++|.+||+ +++.++++..+. +.++ ++||++|+++.. ++|.+||++ +
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 67888865 655432 347999999 789999998776 5665 458999998886 999999987 7
Q ss_pred --cccccccccccCEEEEEe
Q 003217 489 --NLLGGWVAHSSPVIKMAV 506 (838)
Q Consensus 489 --~~i~~l~gH~~~V~sla~ 506 (838)
++++++..+......+++
T Consensus 336 ~l~~~~~i~~~G~~P~~~~~ 355 (361)
T 2oiz_A 336 EPKLLRTIEGAAEASLQVQF 355 (361)
T ss_dssp SCEEEEEETTSCSSEEEEEE
T ss_pred cceeeEEeccCCCCcEEEEe
Confidence 777776555555566553
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.25 E-value=5e-10 Score=123.18 Aligned_cols=289 Identities=9% Similarity=-0.027 Sum_probs=147.1
Q ss_pred CeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCccCCCCCcceeEEecccccc-EEEEEEecCCC-EEEeeCCCcEEEE
Q 003217 193 SVMCMVGDEASGVVWSGHRD-G--RIMCWKMNARLLDSDDGFGEVLSWQAHRGP-VLSLCISSYGD-LWSGSEGGGIKIW 267 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~D-G--tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~-V~slafs~dG~-L~SgS~DgtIrvW 267 (838)
.+.+++|+|||++|+....+ | .|.+||+.++ + ...+..+... +..++|+|||+ |+.++.++.|.+|
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~--------~-~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~ 107 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ--------Q-AVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKV 107 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT--------E-EEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCC--------c-EEEeecCCCCccccceECCCCCEEEEEEcCCcEEEE
Confidence 35667899999998776543 3 6788898886 3 3333333333 33478999998 7788888999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEE------eCCCcEEEEeccC
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS------AGFLSFALWDART 341 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s------~s~~tI~lWD~~t 341 (838)
++.+++............. ....+............ ......++++..++. .....|.+||+.+
T Consensus 108 d~~~~~~~~~~~~~~~~~~----~g~~l~~~~~~~~~~~~------~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~ 177 (396)
T 3c5m_A 108 DLETLEEQVIYTVDEEWKG----YGTWVANSDCTKLVGIE------ILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET 177 (396)
T ss_dssp ETTTCCEEEEEECCTTEEE----EEEEEECTTSSEEEEEE------EEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT
T ss_pred ECCCCCcEEEEecccccCC----CCCEEEeccCCcccccc------ccccccCCCCcceeeeeeccCCCcceEEEEECCC
Confidence 9977543221111111000 00000000000000000 000011233332222 1234788999999
Q ss_pred ccEEEEEecCCceEEeeeccc-CcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccC----ccc
Q 003217 342 RELLKVFNIDGQIENRVDMSL-LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG----GFG 416 (838)
Q Consensus 342 g~~l~~l~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g----~~~ 416 (838)
++.......... ...+.+++ ... ++........... ...++.+...+ .+.
T Consensus 178 g~~~~~~~~~~~-~~~~~~sp~dg~-------~l~~~~~~~~~~~-----------------~~~l~~~d~~~~~~~~l~ 232 (396)
T 3c5m_A 178 GELEVIHQDTAW-LGHPIYRPFDDS-------TVGFCHEGPHDLV-----------------DARMWLVNEDGSNVRKIK 232 (396)
T ss_dssp CCEEEEEEESSC-EEEEEEETTEEE-------EEEEEECSCSSSC-----------------SCCCEEEETTSCCCEESS
T ss_pred CcEEeeccCCcc-cccceECCCCCC-------EEEEEecCCCCCC-----------------CceEEEEECCCCceeEee
Confidence 887655432221 12222222 110 0111110000000 00112221111 111
Q ss_pred cC--CCceEEEEEcCCCc-EEEEECC-----CeEEEEcC-CCCeeeEeecCCccEEEEEE-cCCEEEEEe----------
Q 003217 417 DD--NRRTEALTTSIDGM-IWTGGAN-----GLLLQWDP-NGNRLQDFQYLPFAVQCLCT-FGSQIWVGY---------- 476 (838)
Q Consensus 417 ~~--~~~v~ala~S~dg~-l~Sgs~D-----gtIrlWD~-~g~~l~tl~~H~~~V~sls~-dG~~LasGs---------- 476 (838)
.+ ...+..++++|||+ |+.++.+ +.|.+||+ +|+........ .....+++ ||++|++++
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~s~~dg~~l~~~~~~~p~~~~~~ 311 (396)
T 3c5m_A 233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-PCSHLMSNFDGSLMVGDGCDAPVDVADA 311 (396)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-SEEEEEECSSSSEEEEEECCC-------
T ss_pred ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-CCCCCccCCCCceEEEecCCcceeeccc
Confidence 11 22466789999997 6666543 45999999 56543322211 11145567 999888754
Q ss_pred ------eCCeEEEEeCCCcccccccccccC-----------EE--EEEeCCCEEEEEc-CCCCeeeeecC
Q 003217 477 ------MNGIVQVLDLEGNLLGGWVAHSSP-----------VI--KMAVGAGYIFTLA-NHGGIRGWNVT 526 (838)
Q Consensus 477 ------~DgtIrlWD~~g~~i~~l~gH~~~-----------V~--sla~dg~~l~S~S-~DgtIrlWdl~ 526 (838)
.+..|.+||+++..+..+..|... +. ++.+||+.|+.++ .++...+|.+.
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 312 DSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp ---CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 247899999985444556666542 32 3346888887665 46777788764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=5.1e-10 Score=123.83 Aligned_cols=268 Identities=9% Similarity=0.089 Sum_probs=150.6
Q ss_pred CCCEEEEEe------CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee----------CCCcE
Q 003217 202 ASGVVWSGH------RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------EGGGI 264 (838)
Q Consensus 202 dg~~LaSGs------~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS----------~DgtI 264 (838)
+++.++... .|++|.+||..++ +...++..+..+ .++|+|||+ |++++ .|++|
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~--------~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v 83 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNG--------KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVV 83 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTC--------CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEE
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCC--------eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEE
Confidence 445555543 4789999999887 556667777666 899999998 66654 36789
Q ss_pred EEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC---CCcEEEEeccC
Q 003217 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDART 341 (838)
Q Consensus 265 rvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s---~~tI~lWD~~t 341 (838)
.+||..+.+..-.+..... + ... ......+++++++..++.+. +++|.+||+.+
T Consensus 84 ~v~d~~t~~~~~~i~~~~~----------------~-~~~------g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~ 140 (361)
T 2oiz_A 84 EVWDADKLTFEKEISLPPK----------------R-VQG------LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK 140 (361)
T ss_dssp EEEETTTCCEEEEEEECTT----------------B-CCB------CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT
T ss_pred EEEECcCCcEEEEEEcCcc----------------c-ccc------CCCcceEEECCCCCEEEEECCCCCCeEEEEECCC
Confidence 9999876443221110000 0 000 01223466778888888764 36899999999
Q ss_pred ccEEEE-EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeec-CCc-EE-EEeccCcccc
Q 003217 342 RELLKV-FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADA-VR-RVAAKGGFGD 417 (838)
Q Consensus 342 g~~l~~-l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~-~~~-v~-~v~~~g~~~~ 417 (838)
++.+.. +...+... +.+.+.... + . +.+.+++...+... .++ +. .......+..
T Consensus 141 ~~~~~~~i~~~~~~~--v~~~p~~~~------~--~------------~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~ 198 (361)
T 2oiz_A 141 GDYVEDVTAAAGCWS--VIPQPNRPR------S--F------------MTICGDGGLLTINLGEDGKVASQSRSKQMFSV 198 (361)
T ss_dssp TEEEEEEGGGTTEEE--EEECTTSSS------E--E------------EEEETTSSEEEEEECTTSSEEEEEECCCCSCT
T ss_pred CcEEEEEecCCCcce--eEEcCCCCe------e--E------------EEECCCCcEEEEEECCCCcEeeeccccceEcC
Confidence 998877 54332210 011111000 0 0 00111111111100 000 00 0000000111
Q ss_pred CCCceEEEEEcCCC-cEEEEECCCeEEEEcCCC-C--eeeEeec------------CCccEEEEEEcCCEEEEEee----
Q 003217 418 DNRRTEALTTSIDG-MIWTGGANGLLLQWDPNG-N--RLQDFQY------------LPFAVQCLCTFGSQIWVGYM---- 477 (838)
Q Consensus 418 ~~~~v~ala~S~dg-~l~Sgs~DgtIrlWD~~g-~--~l~tl~~------------H~~~V~sls~dG~~LasGs~---- 477 (838)
....+ .+.+++++ .++..+.+++|.+||..+ . .+.++.. .......+.++|++++++..
T Consensus 199 ~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~ 277 (361)
T 2oiz_A 199 KDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK 277 (361)
T ss_dssp TTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC
T ss_pred CCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCC
Confidence 11111 12234555 366667788999999843 2 2222211 11112456778898888654
Q ss_pred -------CCeEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecCCC
Q 003217 478 -------NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 478 -------DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
+++|.+||++ ++.+.++..|. +++|+ +||++|++++. ++|.+||..+.
T Consensus 278 ~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 278 EGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred cccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 3589999987 67888888877 77766 58999998887 99999998764
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.2e-09 Score=115.07 Aligned_cols=95 Identities=12% Similarity=0.077 Sum_probs=66.2
Q ss_pred cCCCc-EEEEECC--------CeEEEEcCCCCeeeEeecCCccEEE-EEE-cCCEEEEEeeCCeEEEEeCC-Cccccccc
Q 003217 428 SIDGM-IWTGGAN--------GLLLQWDPNGNRLQDFQYLPFAVQC-LCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (838)
Q Consensus 428 S~dg~-l~Sgs~D--------gtIrlWD~~g~~l~tl~~H~~~V~s-ls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (838)
+|||+ |+.++.+ ..|.+|| +|+....+..|...|.. +.+ || .+++++.++.++|| +. |+. ..+.
T Consensus 223 spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~-~~~g~~-~~~~ 298 (347)
T 2gop_A 223 DSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVNLY-IWDGEI-KPIA 298 (347)
T ss_dssp EECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSEEEEEEEETTE-EEEEEEETTEEEEE-EESSSE-EEEE
T ss_pred CCCCCEEEEEEccccCCccccceEEEEC-CCceEeccccCCcccCCccEEcCc-EEEEEecCCcEEEE-EcCCce-EEEe
Confidence 56665 5555533 3688888 77665555566777775 544 56 88888999999999 76 554 3444
Q ss_pred ccccCEEEEEeCCCEEEEEcCCCCe-eeeecC
Q 003217 496 AHSSPVIKMAVGAGYIFTLANHGGI-RGWNVT 526 (838)
Q Consensus 496 gH~~~V~sla~dg~~l~S~S~DgtI-rlWdl~ 526 (838)
.+...|.++++++..+++++.+++. ++|.+.
T Consensus 299 ~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 299 KGRHWIMGFDVDEIVVYLKETATRLRELFTWD 330 (347)
T ss_dssp CSSSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred cCCCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence 5577888888766666777777765 888864
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5e-08 Score=102.59 Aligned_cols=266 Identities=11% Similarity=0.093 Sum_probs=161.2
Q ss_pred eeEEEEecCC-EEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCTEE-QLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~~~-~l~~g~--d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
..+.|+.+.+ .+|++. ++.|.+||.. ..... +..... ...+.+++++++|.+.++..
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~------------------~~~~~~-~~~~~~i~~~~~g~l~v~~~ 75 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GKITE------------------YPLPTP-DAKVMCLTISSDGEVWFTEN 75 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE------------------EECSST-TCCEEEEEECTTSCEEEEET
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE------------------ecCCcc-cCceeeEEECCCCCEEEeCC
Confidence 4567777644 788865 5689999976 22110 000011 34688999999998777766
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEe-eCCCcEEEEECCCccee-eecCCCceeeeEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSG-SEGGGIKIWPWEAIEKA-LSLKPEERHTAAL 288 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~Sg-S~DgtIrvWd~~~~~~~-~~~~~~~~~~~~~ 288 (838)
.++.|..|+..+. .....+..+...+.+|+++++|+||.+ ..++.|.+||. ++... +....
T Consensus 76 ~~~~i~~~~~~g~--------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~-------- 138 (299)
T 2z2n_A 76 AANKIGRITKKGI--------IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPN-------- 138 (299)
T ss_dssp TTTEEEEECTTSC--------EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSS--------
T ss_pred CCCeEEEECCCCc--------EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCC--------
Confidence 7889999998632 122222334567899999999998654 56789999987 32211 11000
Q ss_pred EEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeecccCccc
Q 003217 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (838)
.......++.++++ .+|.+. .+.|..||. +++.... ...
T Consensus 139 ---------------------~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~-~~~--------------- 179 (299)
T 2z2n_A 139 ---------------------KGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDITEF-KIP--------------- 179 (299)
T ss_dssp ---------------------TTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEE-ECS---------------
T ss_pred ---------------------CCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEEEe-eCC---------------
Confidence 01234566776655 455543 357888887 6654221 000
Q ss_pred ccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEE-CCCeEEEE
Q 003217 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANGLLLQW 445 (838)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs-~DgtIrlW 445 (838)
.....+..++++++|.+|.+. .++.|.+|
T Consensus 180 --------------------------------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 209 (299)
T 2z2n_A 180 --------------------------------------------------TPASGPVGITKGNDDALWFVEIIGNKIGRI 209 (299)
T ss_dssp --------------------------------------------------STTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred --------------------------------------------------CCCCcceeEEECCCCCEEEEccCCceEEEE
Confidence 001123467788888888776 36789999
Q ss_pred cCCCCeeeE-eecCCccEEEEEEcCC-EEEEEe-eCCeEEEEeCCCcccc-cccccccCEEEEEe-CCCEEEEEcCCCCe
Q 003217 446 DPNGNRLQD-FQYLPFAVQCLCTFGS-QIWVGY-MNGIVQVLDLEGNLLG-GWVAHSSPVIKMAV-GAGYIFTLANHGGI 520 (838)
Q Consensus 446 D~~g~~l~t-l~~H~~~V~sls~dG~-~LasGs-~DgtIrlWD~~g~~i~-~l~gH~~~V~sla~-dg~~l~S~S~DgtI 520 (838)
|.+++.... +..+...+.+++.+.. .||++. .++.|.+||.+++... .+..+...+.+++. +++..++.+ .+.|
T Consensus 210 ~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~g~l~v~~~-~~~l 288 (299)
T 2z2n_A 210 TTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICFDGETIWFAME-CDKI 288 (299)
T ss_dssp CTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEECSSCEEEEET-TTEE
T ss_pred CCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCCCceEEEeCCCCCCccceEEecCCCEEEEec-CCcE
Confidence 996654322 2234567888877522 466665 5789999998765322 13345567887775 444444444 4556
Q ss_pred eeeecC
Q 003217 521 RGWNVT 526 (838)
Q Consensus 521 rlWdl~ 526 (838)
..++..
T Consensus 289 ~~~~~~ 294 (299)
T 2z2n_A 289 GKLTLI 294 (299)
T ss_dssp EEEEEC
T ss_pred EEEEcC
Confidence 666643
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=9e-09 Score=108.63 Aligned_cols=231 Identities=7% Similarity=0.069 Sum_probs=139.3
Q ss_pred EEEecC-CEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEc-CCCCEEEEEeC-
Q 003217 137 TIVCTE-EQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGD-EASGVVWSGHR- 211 (838)
Q Consensus 137 ~l~~~~-~~l~~g--~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s-~dg~~LaSGs~- 211 (838)
.++.+. ..+|++ .++.|++||.+.. .... . +.....+ .+ ...+.+++++ ++++++++...
T Consensus 34 ~v~~~~~g~l~v~~~~~~~i~~~d~~g~-~~~~-----~----~~~~~~~----~~-~~~p~~i~~~~~~g~l~v~~~~~ 98 (286)
T 1q7f_A 34 GVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQ-----F----GECGKRD----SQ-LLYPNRVAVVRNSGDIIVTERSP 98 (286)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECTTSC-EEEE-----E----CCBSSST----TC-BSSEEEEEEETTTTEEEEEECGG
T ss_pred eEEECCCCCEEEEECCCCEEEEECCCCc-EEEE-----e----cccCCCc----cc-ccCceEEEEEcCCCeEEEEcCCC
Confidence 444443 367764 4779999997532 1110 0 0000000 01 3467889994 66655555533
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEec-cccccEEEEEEecCCCEE-EeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~L~-SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
++.|++|+..+ +....+. ++...+.+|+++++|+|+ +.+.++.|.+|+.+.. ....+..
T Consensus 99 ~~~i~~~d~~g---------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~--------- 159 (286)
T 1q7f_A 99 THQIQIYNQYG---------QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKFGC--------- 159 (286)
T ss_dssp GCEEEEECTTS---------CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEEEC---------
T ss_pred CCEEEEECCCC---------cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EEEEeCC---------
Confidence 89999999543 3444443 345678999999999975 5567889999997431 1111100
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeecccCcccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
..+ ......++.++++. +|.+. +..|++||.. ++.+..+..++
T Consensus 160 --------~~~----------~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~g--------------- 204 (286)
T 1q7f_A 160 --------SKH----------LEFPNGVVVNDKQE-IFISDNRAHCVKVFNYE-GQYLRQIGGEG--------------- 204 (286)
T ss_dssp --------TTT----------CSSEEEEEECSSSE-EEEEEGGGTEEEEEETT-CCEEEEESCTT---------------
T ss_pred --------CCc----------cCCcEEEEECCCCC-EEEEECCCCEEEEEcCC-CCEEEEEccCC---------------
Confidence 000 12355677776655 55443 4689999873 44433331110
Q ss_pred cccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEE-CCC-eEEEE
Q 003217 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANG-LLLQW 445 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs-~Dg-tIrlW 445 (838)
+...+..++++++|.+|.+. .++ .|++|
T Consensus 205 --------------------------------------------------~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~ 234 (286)
T 1q7f_A 205 --------------------------------------------------ITNYPIGVGINSNGEILIADNHNNFNLTIF 234 (286)
T ss_dssp --------------------------------------------------TSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred --------------------------------------------------ccCCCcEEEECCCCCEEEEeCCCCEEEEEE
Confidence 01223467889999976655 454 89999
Q ss_pred cCCCCeeeEeecCCc--cEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 446 DPNGNRLQDFQYLPF--AVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 446 D~~g~~l~tl~~H~~--~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
|.+|+.+.++..+.. .+.+++. +|+ |++++.|++|++|+..
T Consensus 235 ~~~g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs~~~~~v~v~~~~ 279 (286)
T 1q7f_A 235 TQDGQLISALESKVKHAQCFDVALMDDGS-VVLASKDYRLYIYRYV 279 (286)
T ss_dssp CTTSCEEEEEEESSCCSCEEEEEEETTTE-EEEEETTTEEEEEECS
T ss_pred CCCCCEEEEEcccCCCCcceeEEECCCCc-EEEECCCCeEEEEEcc
Confidence 999998888876543 3666665 565 5555779999999975
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-08 Score=109.53 Aligned_cols=223 Identities=13% Similarity=0.098 Sum_probs=133.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEee-CC----CcEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EG----GGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~D----gtIr 265 (838)
...+.+++++++|++++++..++.|.+||.+++ +....+..+...|.+|+++++|+||.+. .+ +.|.
T Consensus 44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~--------~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK--------EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTC--------CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred CccccCcEECCCCCEEEEECCCCEEEEEeCCCC--------cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 345688999999998889999999999999876 2222233567889999999999976554 44 5899
Q ss_pred EEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-------CcEEEEe
Q 003217 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-------LSFALWD 338 (838)
Q Consensus 266 vWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-------~tI~lWD 338 (838)
+||.++......+.... ....+..++.++++..+++... ..|..+|
T Consensus 116 ~~d~~~~~~~~~~~~~~---------------------------~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~ 168 (333)
T 2dg1_A 116 AATENGDNLQDIIEDLS---------------------------TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVS 168 (333)
T ss_dssp EECTTSCSCEEEECSSS---------------------------SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEEC
T ss_pred EEeCCCCEEEEEEccCc---------------------------cCCcccceEECCCCCEEEEeccccccCCCceEEEEe
Confidence 99987643211010000 0123556677766543333221 1233334
Q ss_pred ccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccC
Q 003217 339 ARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDD 418 (838)
Q Consensus 339 ~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~ 418 (838)
..++++.... ..
T Consensus 169 ~~~~~~~~~~--------------------------------------------------------------------~~ 180 (333)
T 2dg1_A 169 PDFRTVTPII--------------------------------------------------------------------QN 180 (333)
T ss_dssp TTSCCEEEEE--------------------------------------------------------------------EE
T ss_pred CCCCEEEEee--------------------------------------------------------------------cC
Confidence 3333221100 00
Q ss_pred CCceEEEEEcCCCc-EEEE-ECCCeEEEEcC--CCCeeeEe--------ecCCccEEEEEEc--CCEEEEEeeCCeEEEE
Q 003217 419 NRRTEALTTSIDGM-IWTG-GANGLLLQWDP--NGNRLQDF--------QYLPFAVQCLCTF--GSQIWVGYMNGIVQVL 484 (838)
Q Consensus 419 ~~~v~ala~S~dg~-l~Sg-s~DgtIrlWD~--~g~~l~tl--------~~H~~~V~sls~d--G~~LasGs~DgtIrlW 484 (838)
...+..+++++||. |+.+ +.++.|.+||. +|+.+..+ .++ ..+..++.+ |...++...++.|.+|
T Consensus 181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~ 259 (333)
T 2dg1_A 181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVF 259 (333)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEE
Confidence 01134577889986 6554 45788999998 35544322 122 356677764 5544444457899999
Q ss_pred eCCCccccccccccc------CEEEEEe--CCCEEEEEcCC
Q 003217 485 DLEGNLLGGWVAHSS------PVIKMAV--GAGYIFTLANH 517 (838)
Q Consensus 485 D~~g~~i~~l~gH~~------~V~sla~--dg~~l~S~S~D 517 (838)
|.+++.+..+..+.. .+.++++ |++.|+.++.+
T Consensus 260 d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 260 NKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp CTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 998877666654432 5677764 55566544444
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.16 E-value=5.6e-09 Score=126.48 Aligned_cols=105 Identities=11% Similarity=-0.010 Sum_probs=73.1
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCC---------Cc
Q 003217 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD---------GR 214 (838)
Q Consensus 144 ~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~D---------Gt 214 (838)
+++++.|++|++||+.+...... +. +. .+. .. ......+++||||+.|+.++.+ +.
T Consensus 29 ~~~~~~~~~i~~~~~~~~~~~~~-----~~---~~----~~~--~~-~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 29 EYLYKQENNILVFNAEYGNSSVF-----LE---NS----TFD--EF-GHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp EEEEEETTEEEEEETTTCCEEEE-----EC---TT----TTT--TC-CSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cEEEEcCCcEEEEECCCCceEEE-----Ee---ch----hhh--hh-cccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 44444499999999977543211 00 00 000 00 1122347899999999999987 45
Q ss_pred EEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcc
Q 003217 215 IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 215 IrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~ 273 (838)
+.+||+.++ ....+.+|.+.+..++|||||+ |+.+ .|+.|.+|++.++.
T Consensus 94 ~~~~d~~~~---------~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 94 YDIYDLNKR---------QLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP 143 (740)
T ss_dssp EEEEETTTT---------EECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred EEEEECCCC---------cEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc
Confidence 569999996 3445778888999999999998 7766 46899999997754
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.1e-09 Score=115.99 Aligned_cols=228 Identities=10% Similarity=0.008 Sum_probs=146.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEE-EeeCCCcEEEEECC
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWE 270 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~-SgS~DgtIrvWd~~ 270 (838)
..|.+++|++++..+++.+.++.++.|. . +....+.+|...+.+++|+++|+|| +++.++.|.+||.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~ 74 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT--A---------EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPE 74 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE--C---------EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred cccceeeecCCccceeEEeecccCcccc--c---------ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCC
Confidence 4577888998888888888899999992 2 3455667777788999999999975 78889999999987
Q ss_pred CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-----CcEEEEeccCccEE
Q 003217 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-----LSFALWDARTRELL 345 (838)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-----~tI~lWD~~tg~~l 345 (838)
+++....... ....+..++.++++..+++... ..|.+||..++.+.
T Consensus 75 ~~~~~~~~~~-----------------------------~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~ 125 (333)
T 2dg1_A 75 TKEIKRPFVS-----------------------------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ 125 (333)
T ss_dssp TCCEEEEEEC-----------------------------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred CCcEEEEeeC-----------------------------CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE
Confidence 6432110000 0234667777776654444333 36888888776542
Q ss_pred EEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEE
Q 003217 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL 425 (838)
Q Consensus 346 ~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al 425 (838)
..+... .....+..+
T Consensus 126 ~~~~~~-----------------------------------------------------------------~~~~~~~~i 140 (333)
T 2dg1_A 126 DIIEDL-----------------------------------------------------------------STAYCIDDM 140 (333)
T ss_dssp EEECSS-----------------------------------------------------------------SSCCCEEEE
T ss_pred EEEccC-----------------------------------------------------------------ccCCcccce
Confidence 221100 001234567
Q ss_pred EEcCCCcEEEEECC-------CeEEEEcCCCCeeeEeecCCccEEEEEE--cCCEEEEEe-eCCeEEEEeCC--Cccccc
Q 003217 426 TTSIDGMIWTGGAN-------GLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLE--GNLLGG 493 (838)
Q Consensus 426 a~S~dg~l~Sgs~D-------gtIrlWD~~g~~l~tl~~H~~~V~sls~--dG~~LasGs-~DgtIrlWD~~--g~~i~~ 493 (838)
+++++|.+|.++.. +.|..||.++..+..+..+...+..+++ +|++|+.+. .++.|.+||+. ++.+..
T Consensus 141 ~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~ 220 (333)
T 2dg1_A 141 VFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP 220 (333)
T ss_dssp EECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE
T ss_pred EECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccc
Confidence 88899998877653 4577777754334444333345666654 677776654 57899999984 443321
Q ss_pred --------ccccccCEEEEEe--CCCEEEEEcCCCCeeeeec
Q 003217 494 --------WVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 494 --------l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl 525 (838)
+.+| ..+..|+. +|+..++...++.|.+|+.
T Consensus 221 ~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 221 FGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp EEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred ccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 2222 35666775 5666666667889999985
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=9.4e-08 Score=116.64 Aligned_cols=319 Identities=13% Similarity=0.219 Sum_probs=193.7
Q ss_pred ceeEEEEec-CCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 133 CFLRTIVCT-EEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 133 ~~~~~l~~~-~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
..+++|..+ .+.||+++ +++|.+||..+...... .. ....+ ..+. ...|.|+..|++| .||.|+
T Consensus 215 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~--------~~--~~~~~--~~l~-~~~i~~i~~d~~g-~lWigt 280 (795)
T 4a2l_A 215 KQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNY--------LH--SPSNP--KSIS-SNYIRSLAMDSQN-RLWIGT 280 (795)
T ss_dssp CCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEE--------CC--CTTCT--TSCS-CSBEEEEEECTTS-CEEEEE
T ss_pred CeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEe--------ec--CCCCc--cccC-CCeEEEEEEcCCC-CEEEEe
Confidence 356677765 55999987 56999999865321110 00 00001 1122 5679999999776 478888
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEec--------cccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCc
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQ--------AHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~--------gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~ 282 (838)
.+| +.+|+..++ ....+. -....|.+|..+++|.||.|+.++.|..|+..+..... +...
T Consensus 281 ~~G-l~~~~~~~~---------~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~- 348 (795)
T 4a2l_A 281 FND-LNIYHEGTD---------SFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKN-IRNI- 348 (795)
T ss_dssp SSC-EEEEETTTT---------EEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEE-ECCC-
T ss_pred CCh-hheEcCCCC---------eEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceE-EcCC-
Confidence 775 678888764 122221 12367999999999999999999999999875432110 0000
Q ss_pred eeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecCCceEEeeecc
Q 003217 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMS 361 (838)
Q Consensus 283 ~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s 361 (838)
.....++...|.+++.+. .+.||.|++ +++..||..++++.......... ...++
T Consensus 349 ---------------------~~~~~l~~~~V~~i~~d~-~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~--~~~l~ 404 (795)
T 4a2l_A 349 ---------------------PYKNSLSDNVVSCIVEDK-DKNLWIGTNDGGLNLYNPITQRFTSYTLQEDES--ARGIG 404 (795)
T ss_dssp ---------------------TTSSSCSCSSEEEEEECT-TSCEEEEESSSCEEEECTTTCCEEEECCC--------CCS
T ss_pred ---------------------CCCCCCCCCeeEEEEECC-CCCEEEEECCCCeEEEcCCCCcEEEEecCCCCc--ccCCC
Confidence 000112245688888765 457898886 58999999988764322110000 00000
Q ss_pred cCcccccccceeeEEEecCCCCcceeeeeEeecCcc-eeeecC-CcEEEEecc-Ccccc--------CCCceEEEEEcCC
Q 003217 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRN-AIMGAA-DAVRRVAAK-GGFGD--------DNRRTEALTTSID 430 (838)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~-~~~g~~-~~v~~v~~~-g~~~~--------~~~~v~ala~S~d 430 (838)
. ..+.++.. +.... +|+|+. .|+.++... +.+.. ....|.++..+++
T Consensus 405 ~---------------------~~v~~i~~-d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 462 (795)
T 4a2l_A 405 S---------------------NNIKAVYV-DEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGE 462 (795)
T ss_dssp C---------------------SCEEEEEE-ETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSS
T ss_pred C---------------------ccEEEEEE-cCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCC
Confidence 0 00001111 11234 678875 677777642 22211 2356889999999
Q ss_pred CcEEEEECCCeEEEEcCCCCeeeEeec-------CCccEEEEEEcC-CEEEEEeeCCeEEEEeCCCcccccc-------c
Q 003217 431 GMIWTGGANGLLLQWDPNGNRLQDFQY-------LPFAVQCLCTFG-SQIWVGYMNGIVQVLDLEGNLLGGW-------V 495 (838)
Q Consensus 431 g~l~Sgs~DgtIrlWD~~g~~l~tl~~-------H~~~V~sls~dG-~~LasGs~DgtIrlWD~~g~~i~~l-------~ 495 (838)
|.||.|+.+| |.+||........+.. +...|.++..|. ..||.|+. +.|.+||..+... .+ .
T Consensus 463 g~lwigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~ 539 (795)
T 4a2l_A 463 GNLWLGTLSA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI-QKASILPVSN 539 (795)
T ss_dssp SCEEEEESSC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE-EECCCSCSCG
T ss_pred CCEEEEecCc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE-EEecCCCCCC
Confidence 9999999865 8899985444343321 246799998874 37888887 6789999764322 22 2
Q ss_pred ccccCEEEEEeCCCEEEEEcCCCCeeeeecC
Q 003217 496 AHSSPVIKMAVGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 496 gH~~~V~sla~dg~~l~S~S~DgtIrlWdl~ 526 (838)
.+...|.+|..|.+..++.++.+.|..||..
T Consensus 540 l~~~~i~~i~~d~~g~lWigT~~Gl~~~d~~ 570 (795)
T 4a2l_A 540 VTKLFTNCIYEASNGIIWVGTREGFYCFNEK 570 (795)
T ss_dssp GGGSCEEEEEECTTSCEEEEESSCEEEEETT
T ss_pred CCCCeeEEEEECCCCCEEEEeCCCceeECCC
Confidence 4567899999865544555555588888854
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.8e-08 Score=104.54 Aligned_cols=222 Identities=13% Similarity=0.101 Sum_probs=136.6
Q ss_pred cCC-EEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003217 141 TEE-QLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCW 218 (838)
Q Consensus 141 ~~~-~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvW 218 (838)
+++ .+|++. +++|.+||.++. . .. +. .. ...+.+++++++|+++++.+.++.|.+|
T Consensus 38 ~g~~l~~~~~~~~~i~~~~~~~~-~-~~-----------------~~--~~-~~~~~~l~~~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 38 ARSAVIFSDVRQNRTWAWSDDGQ-L-SP-----------------EM--HP-SHHQNGHCLNKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp GGTEEEEEEGGGTEEEEEETTSC-E-EE-----------------EE--SS-CSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred CCCEEEEEeCCCCEEEEEECCCC-e-EE-----------------EE--CC-CCCcceeeECCCCcEEEEecCCCeEEEE
Confidence 344 466654 679999998754 1 11 11 12 4578999999999988777778999999
Q ss_pred ECCCCccCCCCCcceeEEec---cc-cccEEEEEEecCCCEEE-----eeCC-----------CcEEEEECCCcceeeec
Q 003217 219 KMNARLLDSDDGFGEVLSWQ---AH-RGPVLSLCISSYGDLWS-----GSEG-----------GGIKIWPWEAIEKALSL 278 (838)
Q Consensus 219 d~~~g~~~~~~~~~~~~~l~---gH-~~~V~slafs~dG~L~S-----gS~D-----------gtIrvWd~~~~~~~~~~ 278 (838)
|..++ +...... +. ...+++++++|+|+||. |+.+ +.-+||.++.......+
T Consensus 96 d~~~g--------~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 167 (296)
T 3e5z_A 96 REPGG--------EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAP 167 (296)
T ss_dssp CSTTC--------CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEE
T ss_pred cCCCC--------cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEe
Confidence 99775 2221111 11 23567899999999764 4311 12245544321110000
Q ss_pred CCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEecc-CccE-E--EEEecCCc
Q 003217 279 KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR-TREL-L--KVFNIDGQ 353 (838)
Q Consensus 279 ~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~-tg~~-l--~~l~~~~~ 353 (838)
. .. ......++.++++..+++.+ ...|.+||+. +|++ . ..+
T Consensus 168 ~-------------------~~----------~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~----- 213 (296)
T 3e5z_A 168 I-------------------RD----------RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF----- 213 (296)
T ss_dssp E-------------------CC----------CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-----
T ss_pred e-------------------cC----------CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-----
Confidence 0 00 11234567777777665554 3678899886 4443 1 111
Q ss_pred eEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcE
Q 003217 354 IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMI 433 (838)
Q Consensus 354 ~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l 433 (838)
.. ....+..++++++|.|
T Consensus 214 -------------------------~~-------------------------------------~~~~p~~i~~d~~G~l 231 (296)
T 3e5z_A 214 -------------------------TV-------------------------------------EPGKTDGLRVDAGGLI 231 (296)
T ss_dssp -------------------------CC-------------------------------------SSSCCCSEEEBTTSCE
T ss_pred -------------------------eC-------------------------------------CCCCCCeEEECCCCCE
Confidence 00 0011224678899999
Q ss_pred EEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE---cCCEEEEEeeCCeEEEEeCCCccc
Q 003217 434 WTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLEGNLL 491 (838)
Q Consensus 434 ~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~g~~i 491 (838)
|.+. ++.|.+||.+|+.+..+..+.. +.++++ +++.||+++.++ |.-++.+.+.+
T Consensus 232 ~v~~-~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 232 WASA-GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp EEEE-TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred EEEc-CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 9888 7889999999999999988777 777765 567999988764 44456554433
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-09 Score=116.12 Aligned_cols=303 Identities=12% Similarity=0.084 Sum_probs=178.3
Q ss_pred CCCccccCcee-EEEEec-CCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcC
Q 003217 125 PLRETQIGCFL-RTIVCT-EEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE 201 (838)
Q Consensus 125 ~~~~~~~~~~~-~~l~~~-~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~ 201 (838)
++|....+..+ .+++.+ ++.+|+++ +++|..|| .+...... ..+. ...+.++++++
T Consensus 11 ~~W~~~~~~~~~~~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~-------------------~~~~-~~~~~~~~~~~ 69 (330)
T 3hxj_A 11 IKWEFLIGNSIDSSPILAKNGTIYLGSSNKNLYAIN-TDGSVKWF-------------------FKSG-EIIECRPSIGK 69 (330)
T ss_dssp -CCTTTSCEEECCCCEECTTSCEECSSTTTTTEEEC-TTSCEEES-------------------SCGG-GEEEECCEETT
T ss_pred EEEEEeCCCCcccCceEccCCeEEEEcCCCEEEEEC-CCCcEEEE-------------------EecC-CCcccceEEec
Confidence 34444443322 233443 56899976 78999999 65443221 0011 33456778876
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCC
Q 003217 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPE 281 (838)
Q Consensus 202 dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~ 281 (838)
+| .||.|+.+ +..+|. ++ +....+..+.....+.++. +|.||.|+.++.|..+|.. +.........
T Consensus 70 ~g-~l~v~t~~--l~~~d~-~g--------~~~~~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~ 135 (330)
T 3hxj_A 70 DG-TIYFGSDK--VYAINP-DG--------TEKWRFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTK 135 (330)
T ss_dssp TT-EECCSSCE--EEEECC-CG--------GGGGGSCC-----CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECS
T ss_pred CC-cEEEecCc--EEEECC-CC--------cEEEEEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCC
Confidence 55 67777776 878886 43 2222222222223334444 7789999999999999986 4332221110
Q ss_pred ceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-CcEEEEeccCccEEEEEecCCceEEeeec
Q 003217 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDM 360 (838)
Q Consensus 282 ~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (838)
...+..++..+ +..||.++. +.|..+|.. |+.+..+.......
T Consensus 136 -----------------------------~~~~~~~~~~~-~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~----- 179 (330)
T 3hxj_A 136 -----------------------------KAIYATPIVSE-DGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAIT----- 179 (330)
T ss_dssp -----------------------------SCCCSCCEECT-TSCEEEECTTSEEEEECTT-SCEEEEEECSSCCC-----
T ss_pred -----------------------------CceeeeeEEcC-CCEEEEEcCCCEEEEECCC-CCEeEEEecCCCce-----
Confidence 00111223333 445777764 789999998 87765554221110
Q ss_pred ccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCcc----ccCCCceEEEEEcCCCcEEEE
Q 003217 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF----GDDNRRTEALTTSIDGMIWTG 436 (838)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~----~~~~~~v~ala~S~dg~l~Sg 436 (838)
.... ......+++++ .++..+...+.. ......+.+++.+++|.||.+
T Consensus 180 ---~~~~------------------------~d~~g~l~v~t-~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~ 231 (330)
T 3hxj_A 180 ---SAAS------------------------IGKDGTIYFGS-DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVT 231 (330)
T ss_dssp ---SCCE------------------------ECTTCCEEEES-SSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEEEE
T ss_pred ---eeeE------------------------EcCCCEEEEEe-CEEEEECCCCcEEEEEccCCcceeceEECCCCeEEEE
Confidence 0000 00112345555 555555532221 112234567788889999999
Q ss_pred ECCCeEEEEcCCCCeeeEeecCCccEEEEEEc-CCEEEEEeeCCeEEEEeCCCcccccccccccCEEEEEe-CCCEEEEE
Q 003217 437 GANGLLLQWDPNGNRLQDFQYLPFAVQCLCTF-GSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV-GAGYIFTL 514 (838)
Q Consensus 437 s~DgtIrlWD~~g~~l~tl~~H~~~V~sls~d-G~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~-dg~~l~S~ 514 (838)
+.++.|..+|.+|+.+..+......+.++..+ +..||+|+.+|.|..+|.+|+.+..+......+.++.. .+..++-+
T Consensus 232 t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~~g 311 (330)
T 3hxj_A 232 SLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWNFETGSWIIATPVIDENGTIYFG 311 (330)
T ss_dssp ETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEEE
T ss_pred cCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECCCCcEEEEEEcCCccccceEEcCCCEEEEE
Confidence 98888999998888777766544444445555 56899999999999999877766666555566777666 34467778
Q ss_pred cCCCCeeeeecC
Q 003217 515 ANHGGIRGWNVT 526 (838)
Q Consensus 515 S~DgtIrlWdl~ 526 (838)
+.+|.+++-...
T Consensus 312 t~~G~~~~~~~~ 323 (330)
T 3hxj_A 312 TRNGKFYALFNL 323 (330)
T ss_dssp CTTSCEEEEEC-
T ss_pred cCCCeEEEEecc
Confidence 889999886643
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-08 Score=104.91 Aligned_cols=230 Identities=12% Similarity=0.011 Sum_probs=140.5
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCC
Q 003217 193 SVMCMVGDEASGVVW-SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 193 ~V~~la~s~dg~~La-SGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~ 271 (838)
...+++++++|++.+ +.+.++.|.+|+..+. ........+...+.+|+++++|+||.+..++.|.+||..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~ 96 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST--------GTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGS 96 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-------------EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCc--------ccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCC
Confidence 677899999998666 4477899999997664 1111112344567899999999987655588999999865
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEe
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFN 349 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~ 349 (838)
.... .... .+ ......++.++++. +|.+. .+.|.+||..+......
T Consensus 97 ~~~~-~~~~-----------------------~~-----~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~-- 144 (270)
T 1rwi_B 97 NNQT-VLPF-----------------------DG-----LNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVL-- 144 (270)
T ss_dssp SCCE-ECCC-----------------------CS-----CSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEEC--
T ss_pred ceEe-eeec-----------------------CC-----cCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEee--
Confidence 3211 0000 00 12345667766554 44432 34566665433211000
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~ 429 (838)
. ......+..+++++
T Consensus 145 -----------------------------~------------------------------------~~~~~~p~~i~~~~ 159 (270)
T 1rwi_B 145 -----------------------------P------------------------------------FTGLNDPDGVAVDN 159 (270)
T ss_dssp -----------------------------C------------------------------------CCSCCSCCCEEECT
T ss_pred -----------------------------c------------------------------------cccCCCceeEEEeC
Confidence 0 00001223577888
Q ss_pred CCcEEEEE-CCCeEEEEcCCCCeeeE-eecCCccEEEEEEcCC-EEEEEe-eCCeEEEEeCCCccccccc-ccccCEEEE
Q 003217 430 DGMIWTGG-ANGLLLQWDPNGNRLQD-FQYLPFAVQCLCTFGS-QIWVGY-MNGIVQVLDLEGNLLGGWV-AHSSPVIKM 504 (838)
Q Consensus 430 dg~l~Sgs-~DgtIrlWD~~g~~l~t-l~~H~~~V~sls~dG~-~LasGs-~DgtIrlWD~~g~~i~~l~-gH~~~V~sl 504 (838)
+|++|.+. .++.|.+||..+..... ...+...+.+|+.+.. .||++. .++.|.+||..+....... .+...+.+|
T Consensus 160 ~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i 239 (270)
T 1rwi_B 160 SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAV 239 (270)
T ss_dssp TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEE
T ss_pred CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeE
Confidence 88887665 46789999996543332 2333466788877532 566555 5789999999865433322 344678888
Q ss_pred Ee--CCCEEEEEcCCCCeeeeecCC
Q 003217 505 AV--GAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 505 a~--dg~~l~S~S~DgtIrlWdl~s 527 (838)
++ +|+..++.+.++.|+++++..
T Consensus 240 ~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 240 AVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp EECTTCCEEEEEGGGTEEEEECCCG
T ss_pred EECCCCCEEEEECCCCEEEEEcCCC
Confidence 75 567777888999999998654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.2e-08 Score=119.20 Aligned_cols=233 Identities=11% Similarity=-0.007 Sum_probs=138.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCc---
Q 003217 193 SVMCMVGDEASGVVWSGHRDG-----RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG--- 263 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DG-----tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt--- 263 (838)
.+..++|||||++||.++.++ +|++||++++ +.......+ ..+.+++|+|||+ |+.++.|+.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg--------~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~ 196 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA--------KELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGK 196 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT--------EEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC--------CCCcccccC-cccceEEEEeCCCEEEEEEECCcccc
Confidence 578899999999998877654 8999999997 333221222 2367899999998 787777766
Q ss_pred -------------EEEEECCCccee--eecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEE
Q 003217 264 -------------IKIWPWEAIEKA--LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS 328 (838)
Q Consensus 264 -------------IrvWd~~~~~~~--~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s 328 (838)
|++|++.+.... +.+.... + ......+..++++..|+.
T Consensus 197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~-----------------~----------~~~~~~~~~SpDg~~l~~ 249 (710)
T 2xdw_A 197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD-----------------E----------PKWMGGAELSDDGRYVLL 249 (710)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT-----------------C----------TTCEEEEEECTTSCEEEE
T ss_pred ccccccccCCCCEEEEEECCCCcccceEEeccCC-----------------C----------CeEEEEEEEcCCCCEEEE
Confidence 999999764321 1111100 0 011233445555554443
Q ss_pred eC------CCcEEEEeccC------cc-EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecC
Q 003217 329 AG------FLSFALWDART------RE-LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRS 395 (838)
Q Consensus 329 ~s------~~tI~lWD~~t------g~-~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~ 395 (838)
.+ ...|.+||+.+ +. ..+.+..+.
T Consensus 250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~------------------------------------------- 286 (710)
T 2xdw_A 250 SIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF------------------------------------------- 286 (710)
T ss_dssp EEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS-------------------------------------------
T ss_pred EEEccCCCccEEEEEECcccccccCCccceEEeeCCC-------------------------------------------
Confidence 32 23577888765 32 111111100
Q ss_pred cceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEEC----CCeEEEEcCC-CC--eeeEeecCCc--cEEEE
Q 003217 396 RNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA----NGLLLQWDPN-GN--RLQDFQYLPF--AVQCL 465 (838)
Q Consensus 396 ~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~----DgtIrlWD~~-g~--~l~tl~~H~~--~V~sl 465 (838)
..+.. .+++||. |+..+. ++.|.+||+. ++ ..+++..|.. .|.++
T Consensus 287 ------------------------~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~ 341 (710)
T 2xdw_A 287 ------------------------EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV 341 (710)
T ss_dssp ------------------------SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEE
T ss_pred ------------------------CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEE
Confidence 00011 1334443 444333 2368999984 43 3466666655 57667
Q ss_pred EEc-CC-EEEEEeeCCe--EEEEeC-CCcccccccccccCEEEEEe--CCCEEE-E---EcCCCCeeeeecCCCC
Q 003217 466 CTF-GS-QIWVGYMNGI--VQVLDL-EGNLLGGWVAHSSPVIKMAV--GAGYIF-T---LANHGGIRGWNVTSPG 529 (838)
Q Consensus 466 s~d-G~-~LasGs~Dgt--IrlWD~-~g~~i~~l~gH~~~V~sla~--dg~~l~-S---~S~DgtIrlWdl~s~~ 529 (838)
++. +. .+++...|+. |++||+ .|+.++.+..|.+.|.++.. +++.++ + ..+.++|.+||+.+..
T Consensus 342 ~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 342 ACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 653 44 6666667774 566787 57777778888777888874 565554 3 3356789999987644
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.9e-08 Score=107.91 Aligned_cols=257 Identities=11% Similarity=-0.023 Sum_probs=153.7
Q ss_pred CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCC
Q 003217 150 ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDD 229 (838)
Q Consensus 150 d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~ 229 (838)
+++|.+||.++...... . . .+ .+..+ + ......++++ ++++.++...+++|.+||..++
T Consensus 16 ~~~l~~~d~~t~~~~~~-i---~---~~-~n~~~----l--g~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~------ 74 (328)
T 3dsm_A 16 NATLSYYDPATCEVENE-V---F---YR-ANGFK----L--GDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF------ 74 (328)
T ss_dssp CBEEEEEETTTTEEECS-H---H---HH-HHSSC----C--BSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC------
T ss_pred CceEEEEECCCCEEhhh-h---H---hh-hcCcc----c--CccceEEEEE-CCEEEEEEcCCCEEEEEECccc------
Confidence 67999999986543211 0 0 00 00000 1 1235667775 4455555566799999999987
Q ss_pred CcceeEEeccccccEEEEEEecCCCEEEee-CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceee
Q 003217 230 GFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSS 308 (838)
Q Consensus 230 ~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~ 308 (838)
+.+.++. .......|+++++|+|+.+. .+++|.+||..+.+....+..... .+.
T Consensus 75 --~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~----------------~~~------ 129 (328)
T 3dsm_A 75 --KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM----------------DME------ 129 (328)
T ss_dssp --CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC----------------CTT------
T ss_pred --EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc----------------ccc------
Confidence 4555554 34567899999999976555 899999999977542211110000 000
Q ss_pred eecCCeEEEEEcCCCCEEEEeC---CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcc
Q 003217 309 ILTSDIKNLLSDHSRAKVWSAG---FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKA 385 (838)
Q Consensus 309 ~~s~~v~~las~~~~~~V~s~s---~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~ 385 (838)
......++. .+.++|.+. +++|.++|+.++++++.+.....
T Consensus 130 --~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~-------------------------------- 173 (328)
T 3dsm_A 130 --SGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ-------------------------------- 173 (328)
T ss_dssp --TCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC--------------------------------
T ss_pred --CCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC--------------------------------
Confidence 001112233 245566553 46899999999887655421100
Q ss_pred eeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECC-----------CeEEEEcC-CCCeee
Q 003217 386 QSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGAN-----------GLLLQWDP-NGNRLQ 453 (838)
Q Consensus 386 ~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~D-----------gtIrlWD~-~g~~l~ 453 (838)
...++++++|++|.++.. +.|.+||. +++.++
T Consensus 174 ------------------------------------p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~ 217 (328)
T 3dsm_A 174 ------------------------------------PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK 217 (328)
T ss_dssp ------------------------------------BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE
T ss_pred ------------------------------------ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE
Confidence 012456677777665542 68999999 577776
Q ss_pred EeecC-CccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccc-c-ccccccCEEEEEeC---CCEEEEE----cCCCCe
Q 003217 454 DFQYL-PFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLG-G-WVAHSSPVIKMAVG---AGYIFTL----ANHGGI 520 (838)
Q Consensus 454 tl~~H-~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~-~-l~gH~~~V~sla~d---g~~l~S~----S~DgtI 520 (838)
++... ......+++ +|++|+++.. +|.+||++ +++.. . +..+.....+|+.+ +...++. ..+++|
T Consensus 218 ~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 218 QFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp EEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred EEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 76532 234566665 5889988654 89999987 44432 1 22224567788764 3344555 568899
Q ss_pred eeeecC
Q 003217 521 RGWNVT 526 (838)
Q Consensus 521 rlWdl~ 526 (838)
.+||..
T Consensus 296 ~v~d~~ 301 (328)
T 3dsm_A 296 YRYSPQ 301 (328)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 999854
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-08 Score=111.11 Aligned_cols=99 Identities=13% Similarity=0.098 Sum_probs=67.0
Q ss_pred eEEEEEcCCCcEEEEECC------C---eEEEEcCCCCeeeEeecCCccEEEEEEcCCEEEEEeeC--------CeEEEE
Q 003217 422 TEALTTSIDGMIWTGGAN------G---LLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMN--------GIVQVL 484 (838)
Q Consensus 422 v~ala~S~dg~l~Sgs~D------g---tIrlWD~~g~~l~tl~~H~~~V~sls~dG~~LasGs~D--------gtIrlW 484 (838)
+..++++|||.+++++.+ . .|.++| +|+ ++.+..+ ..+.++++||++|+.++.+ ..|.+|
T Consensus 173 ~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d-~~~-~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~ 249 (347)
T 2gop_A 173 FSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE-DGK-EEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIY 249 (347)
T ss_dssp TCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE-TTE-EEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEE
T ss_pred cccccCCCCeEEEEEecccccccccccccEEEeC-CCc-eEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEE
Confidence 345677888833444433 1 345555 554 3445555 6677778899988877744 479999
Q ss_pred eCCCcccccccccccCEEE-EEe-CCCEEEEEcCCCCeeeeecC
Q 003217 485 DLEGNLLGGWVAHSSPVIK-MAV-GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 485 D~~g~~i~~l~gH~~~V~s-la~-dg~~l~S~S~DgtIrlWdl~ 526 (838)
| .++......+|...|.. +.+ |+ .+++++.|+.+++| +.
T Consensus 250 d-~~~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 250 D-GKEVMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp C-SSCEEESSTTCCSEEEEEEEETTE-EEEEEEETTEEEEE-EE
T ss_pred C-CCceEeccccCCcccCCccEEcCc-EEEEEecCCcEEEE-Ec
Confidence 9 66665555677777775 665 44 77899999999999 86
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.9e-07 Score=96.67 Aligned_cols=229 Identities=12% Similarity=0.125 Sum_probs=143.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEee-CCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~DgtIrvWd~ 269 (838)
...+.+++++++|++.++...++.|.+||.. +. ........+...+.+|+++++|.||.+. .++.|..|+.
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GK-------ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITK 85 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-------EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-------eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence 3578999999998866655558899999988 42 1122223455789999999999987554 4788999987
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKV 347 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~ 347 (838)
+.....+.... .......++.++++ .+|.+. .+.|.+||. +++....
T Consensus 86 ~g~~~~~~~~~-----------------------------~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~ 134 (299)
T 2z2n_A 86 KGIIKEYTLPN-----------------------------PDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREY 134 (299)
T ss_dssp TSCEEEEECSS-----------------------------TTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEE
T ss_pred CCcEEEEeCCC-----------------------------cCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEe
Confidence 52111111000 02235567776655 455443 357888887 5543211
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
. . ......+..+++
T Consensus 135 ~-~-----------------------------------------------------------------~~~~~~~~~i~~ 148 (299)
T 2z2n_A 135 E-L-----------------------------------------------------------------PNKGSYPSFITL 148 (299)
T ss_dssp E-C-----------------------------------------------------------------SSTTCCEEEEEE
T ss_pred c-C-----------------------------------------------------------------CCCCCCCceEEE
Confidence 0 0 000112446778
Q ss_pred cCCCcEEEEEC-CCeEEEEcCCCCeeeE-eecCCccEEEEEEc--CCEEEEEe-eCCeEEEEeCCCcccc-cccccccCE
Q 003217 428 SIDGMIWTGGA-NGLLLQWDPNGNRLQD-FQYLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLG-GWVAHSSPV 501 (838)
Q Consensus 428 S~dg~l~Sgs~-DgtIrlWD~~g~~l~t-l~~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~-~l~gH~~~V 501 (838)
+++|.+|.+.. ++.|.+||.+|+.... +..+...+.+++.+ |. ||.++ .++.|.+||.+++... ....+...+
T Consensus 149 ~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~ 227 (299)
T 2z2n_A 149 GSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITTSGEITEFKIPTPNARP 227 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTCCEEEEECSSTTCCE
T ss_pred cCCCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECCCCcEEEEECCCCCCCc
Confidence 88999887664 5789999997665432 23345567788775 55 55555 4789999999655422 233455778
Q ss_pred EEEEeC--CCEEEEEcCCCCeeeeec
Q 003217 502 IKMAVG--AGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 502 ~sla~d--g~~l~S~S~DgtIrlWdl 525 (838)
.+|+.+ |+..++...++.|.+|+.
T Consensus 228 ~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 228 HAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEEECSTTCEEEEETTTTEEEEEET
T ss_pred eeEEECCCCCEEEeccCCceEEEECC
Confidence 888864 554455557788999885
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.6e-07 Score=112.49 Aligned_cols=323 Identities=12% Similarity=0.192 Sum_probs=195.5
Q ss_pred CceeEEEEecCC-EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 132 GCFLRTIVCTEE-QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 132 ~~~~~~l~~~~~-~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
+..+.+|.++.+ .||+|++.+|..+|-.+...... ....... .++. .+.|.++..+++|..||.|+
T Consensus 18 ~n~V~~I~qD~~G~lWigT~~GL~ryDG~~f~~~~~----------~~~~~~~--~~l~-~n~I~~i~~d~~g~~lWigt 84 (781)
T 3v9f_A 18 NNYVLSITQDKQGFLWFATEEGLNKFDGTRFITYYK----------EEQSSSV--QSIT-GNELNEVYTDPVQPVIWIAT 84 (781)
T ss_dssp CSBEEEEEECTTSCEEEEESSCEEEECSSSEEEECC----------CSSCSSS--CCCS-CSCEEEEEECSSSSEEEEEE
T ss_pred cCEeEEEEECCCCCEEEccCCcCccccCCceEEEEc----------CCCCCcc--cccc-ccccceEEEcCCCCEEEEEe
Confidence 457889998865 99999999999999654322110 0000000 0233 56799999998877689999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEec-----c---ccccEEEEEEec--CCCEEEeeCCCcEEEEECCCcceeeecCC
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQ-----A---HRGPVLSLCISS--YGDLWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~-----g---H~~~V~slafs~--dG~L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
.++-+-.||..++. ...+. . ....|.+|+.++ +|.||.|+.++.|..++..+.... .+..
T Consensus 85 ~~~Gl~~~d~~~~~---------f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~~~~-~~~~ 154 (781)
T 3v9f_A 85 QRAGLNAYNYETQS---------FSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIATGKFT-HYNK 154 (781)
T ss_dssp SSSCEEEEETTTTE---------EEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSCEEEEETTTTEEE-EEST
T ss_pred CCCCcceECCCCCe---------EEeeccccCCCCCcccCcceEEEecCccCCCEEEEECCCCeeEEECCCCeEE-eecc
Confidence 98557789987741 22221 1 124699999998 899999886667888887543211 0100
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCC-cEEEEeccCccEEEEEecCCceEEeee
Q 003217 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-SFALWDARTRELLKVFNIDGQIENRVD 359 (838)
Q Consensus 281 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~-tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (838)
.. .. ..+...+.+++.+. ...||.++.. ++..+|..++++.. +...... ...
T Consensus 155 ~~--------------------~~---~l~~~~i~~i~~d~-~g~lwigt~~~Gl~~~~~~~~~~~~-~~~~~~~--~~~ 207 (781)
T 3v9f_A 155 ST--------------------VP---ALPSEQTWTATEAE-DGKLYIGHVEGGLSILSLNDKSVKH-FVHDPQN--PNS 207 (781)
T ss_dssp TT--------------------CT---TCSCCCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEE-ECC---------
T ss_pred Cc--------------------cc---CCCccceEEEEECC-CCCEEEEecCCCeEEEcCCCCceEe-eecCCCC--ccc
Confidence 00 00 01133466666653 5678888754 89999998877532 2211000 000
Q ss_pred cccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec-cCcccc-----------CCCceEEEEE
Q 003217 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-KGGFGD-----------DNRRTEALTT 427 (838)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~g~~~~-----------~~~~v~ala~ 427 (838)
++. ..+. ++ +.+....+|+|+..|+.++.. .+.+.. ....|.++..
T Consensus 208 l~~-------~~i~--------------~i-~~d~~g~lwigt~~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~ 265 (781)
T 3v9f_A 208 LPG-------NDVR--------------CI-YKDTNGNIWIGTSKGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQ 265 (781)
T ss_dssp -CC-------SSEE--------------EE-EECTTCCEEEEETTEEEEEETTTTEEEC-----------CCCCEEEEEE
T ss_pred CCC-------Ccee--------------EE-EEcCCCCEEEEeCCcHheECCCCCcEEEEEcCCCccccccCceEEEEEE
Confidence 000 0000 00 111223567787778777764 222211 1346888999
Q ss_pred cCCCcEEEEECCCeEEEEcCCCCeeeEee---------------cCCccEEEEEEcCC-EEEEEeeCCeEEEEeCCCccc
Q 003217 428 SIDGMIWTGGANGLLLQWDPNGNRLQDFQ---------------YLPFAVQCLCTFGS-QIWVGYMNGIVQVLDLEGNLL 491 (838)
Q Consensus 428 S~dg~l~Sgs~DgtIrlWD~~g~~l~tl~---------------~H~~~V~sls~dG~-~LasGs~DgtIrlWD~~g~~i 491 (838)
+++|.||.|+..+-|.++|..+..+..+. .....|.++..|.. .||+|+.++.|..++......
T Consensus 266 d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~ 345 (781)
T 3v9f_A 266 LKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTF 345 (781)
T ss_dssp CTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSC
T ss_pred CCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcc
Confidence 99999999998455889998543222221 23567999988743 899999999999999874332
Q ss_pred ccc----------cccccCEEEEEeCCC-EEEEEcCCCCeeeeecC
Q 003217 492 GGW----------VAHSSPVIKMAVGAG-YIFTLANHGGIRGWNVT 526 (838)
Q Consensus 492 ~~l----------~gH~~~V~sla~dg~-~l~S~S~DgtIrlWdl~ 526 (838)
..+ ......|.+|..|.+ .|+-|+.++.|.+|+..
T Consensus 346 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~ 391 (781)
T 3v9f_A 346 HTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENG 391 (781)
T ss_dssp EEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETT
T ss_pred eeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECC
Confidence 222 123467999998764 45555557889888854
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.06 E-value=6e-09 Score=125.26 Aligned_cols=232 Identities=5% Similarity=-0.078 Sum_probs=137.9
Q ss_pred CCeEEEEEcCCCCEEE-----EEeCCCcEEEEECCCCccCCCCCcceeEEeccccccE--EEEEEecCCC-EEEeeCCCc
Q 003217 192 SSVMCMVGDEASGVVW-----SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPV--LSLCISSYGD-LWSGSEGGG 263 (838)
Q Consensus 192 ~~V~~la~s~dg~~La-----SGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V--~slafs~dG~-L~SgS~Dgt 263 (838)
..+.+++|||||++|| +|+.+.+|++||++++. ... ..|-..+ .+++|+|||+ |+.++.|.+
T Consensus 121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~--------~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~ 190 (695)
T 2bkl_A 121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGE--------WSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTD 190 (695)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCC--------BCS--SCCBSCCTTCCCEECTTSSEEEEEECCCC
T ss_pred EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCC--------CcC--CcccCcccccceEEecCCCEEEEEEecCC
Confidence 3688999999999999 66667799999999972 210 1122222 6789999998 788888877
Q ss_pred -------------EEEEECCCcce--eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEE
Q 003217 264 -------------IKIWPWEAIEK--ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS 328 (838)
Q Consensus 264 -------------IrvWd~~~~~~--~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s 328 (838)
|++|++.+... .+...... + ...+..+..++++..|+.
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~-----------------~----------~~~~~~~~~SpDG~~l~~ 243 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG-----------------D----------PTTFLQSDLSRDGKYLFV 243 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC-----------------C----------TTCEEEEEECTTSCCEEE
T ss_pred CCCccccCCCCCEEEEEECCCCchhceEEEecCC-----------------C----------CEEEEEEEECCCCCEEEE
Confidence 99999976432 11111000 0 112344555666655443
Q ss_pred eC-CC----cEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecC
Q 003217 329 AG-FL----SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA 403 (838)
Q Consensus 329 ~s-~~----tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~ 403 (838)
++ +. .|.+||..+++... +..+.
T Consensus 244 ~~~~~~~~~~l~~~~~~~~~~~~-l~~~~--------------------------------------------------- 271 (695)
T 2bkl_A 244 YILRGWSENDVYWKRPGEKDFRL-LVKGV--------------------------------------------------- 271 (695)
T ss_dssp EEEETTTEEEEEEECTTCSSCEE-EEECS---------------------------------------------------
T ss_pred EEeCCCCceEEEEEcCCCCceEE-eecCC---------------------------------------------------
Confidence 32 22 34555544443211 11000
Q ss_pred CcEEEEeccCccccCCCceEEEEEcCCCcEEEEE----CCCeEEEEcC-CCCe--eeEeecC--CccEEEEEEc-CCEEE
Q 003217 404 DAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG----ANGLLLQWDP-NGNR--LQDFQYL--PFAVQCLCTF-GSQIW 473 (838)
Q Consensus 404 ~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs----~DgtIrlWD~-~g~~--l~tl~~H--~~~V~sls~d-G~~La 473 (838)
..+....+ ++|.++..+ .++.|.+||+ +++. .+++..| ...|..+++. +..++
T Consensus 272 ----------------~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~ 334 (695)
T 2bkl_A 272 ----------------GAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSL 334 (695)
T ss_dssp ----------------SCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEE
T ss_pred ----------------CceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEE
Confidence 00011122 223243333 2578999999 4543 3455544 4457777665 45777
Q ss_pred EEeeCCeEEEEe--CCCccccccccc-ccCEEEEE--eCCCEEE----EEcCCCCeeeeecCCCC
Q 003217 474 VGYMNGIVQVLD--LEGNLLGGWVAH-SSPVIKMA--VGAGYIF----TLANHGGIRGWNVTSPG 529 (838)
Q Consensus 474 sGs~DgtIrlWD--~~g~~i~~l~gH-~~~V~sla--~dg~~l~----S~S~DgtIrlWdl~s~~ 529 (838)
+...|+..+||. ++|+.++.+..| .+.|..++ ++++.++ |....++|.+||+.+..
T Consensus 335 ~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 335 EYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 778899888885 457766666666 55666665 4666666 45567889999987643
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.05 E-value=6e-09 Score=123.84 Aligned_cols=236 Identities=13% Similarity=-0.054 Sum_probs=139.8
Q ss_pred CCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCccCCCCCcceeEEeccccccEE---------EEEEe--cCCC--E
Q 003217 191 VSSVMCMVGDEASGVVWSG--HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVL---------SLCIS--SYGD--L 255 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSG--s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~---------slafs--~dG~--L 255 (838)
...|.++++++++-.++++ +.|+..++|....+ .....+.+|...|. +.+++ |||+ |
T Consensus 23 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l 94 (662)
T 3azo_A 23 SGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--------GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94 (662)
T ss_dssp CSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--------SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred CCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--------CCcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence 5689999999876556666 56889999996443 34556777766666 66565 9986 4
Q ss_pred EEee-CCCcEEEEECC--CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC-
Q 003217 256 WSGS-EGGGIKIWPWE--AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF- 331 (838)
Q Consensus 256 ~SgS-~DgtIrvWd~~--~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~- 331 (838)
+.++ .+..|.+|++. +......+...... .+ ...+..++.++++..|+.++.
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~--------------~~----------~~~~~~~~~spDg~~l~~~~~~ 150 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAV--------------GG----------GLRWADPVLLPERGEVWCMAEE 150 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCEECSCCCCS--------------TT----------CEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEECCCCeEEEEcCCCCCCCCCEeccCCccC--------------CC----------CccccCcEECCCCCEEEEEEec
Confidence 4333 34555555554 10111222110000 00 112345667777877766552
Q ss_pred ----------CcEEEEeccC------ccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecC
Q 003217 332 ----------LSFALWDART------RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRS 395 (838)
Q Consensus 332 ----------~tI~lWD~~t------g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~ 395 (838)
.+|.+||+.+ ++.. .+..
T Consensus 151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~--------------------------------------------- 184 (662)
T 3azo_A 151 FTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSD--------------------------------------------- 184 (662)
T ss_dssp ECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSC---------------------------------------------
T ss_pred ccCCCCCCceeEEEEEECCCCccccCCcee-EEEe---------------------------------------------
Confidence 2577777765 3321 1100
Q ss_pred cceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECC--------CeEEEEcCC--C---CeeeEeecCCcc
Q 003217 396 RNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGAN--------GLLLQWDPN--G---NRLQDFQYLPFA 461 (838)
Q Consensus 396 ~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~D--------gtIrlWD~~--g---~~l~tl~~H~~~ 461 (838)
.+...+..+++||||+ |+.++.+ ..|++||++ | +..+...+|...
T Consensus 185 ---------------------~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~ 243 (662)
T 3azo_A 185 ---------------------DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEA 243 (662)
T ss_dssp ---------------------SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBC
T ss_pred ---------------------cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCce
Confidence 0111223467889997 6666644 379999995 4 333444456778
Q ss_pred EEEEE--EcCCEEEEEeeCC--eEEEEeCC-CcccccccccccC--------EEEEE--eCCCEEEEEcCCCCeeeeecC
Q 003217 462 VQCLC--TFGSQIWVGYMNG--IVQVLDLE-GNLLGGWVAHSSP--------VIKMA--VGAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 462 V~sls--~dG~~LasGs~Dg--tIrlWD~~-g~~i~~l~gH~~~--------V~sla--~dg~~l~S~S~DgtIrlWdl~ 526 (838)
+.++. +||+.+++++.++ .|.+||++ +++.....+|... +.+++ .+++.+++++. +++++|.+.
T Consensus 244 ~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 244 IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp EEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred EcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 88775 4789777877788 67777875 4444333333332 34455 37788889988 999999653
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.5e-08 Score=104.89 Aligned_cols=212 Identities=11% Similarity=0.048 Sum_probs=135.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccc-ccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCC
Q 003217 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 202 dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
.+++|++++.|+.|.+||.++| +.+.++..|. ..+.+++++|+|+++. +.++.|..||. +++....+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG--------~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~ 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK--------EIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAA 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT--------EEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCC--------eEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcC
Confidence 4689999999999999999888 6677777765 4789999999999655 56788999998 5544333321
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC--CcEEEEeccCccEEEEEecCCceEEee
Q 003217 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRV 358 (838)
Q Consensus 281 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~ 358 (838)
.. ...+..+...+++..+++.+. ..+..+|. +|+.+..+......
T Consensus 74 ~~----------------------------~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~---- 120 (276)
T 3no2_A 74 PA----------------------------GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI---- 120 (276)
T ss_dssp CT----------------------------TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC----
T ss_pred CC----------------------------CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC----
Confidence 10 001223334455655555432 34555664 56665554321100
Q ss_pred ecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEE
Q 003217 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG 437 (838)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs 437 (838)
..+......+++.++|. +++.+
T Consensus 121 ---------------------------------------------------------~~~~~~~~~v~~~~~G~~lv~~~ 143 (276)
T 3no2_A 121 ---------------------------------------------------------ERPHAQFRQINKNKKGNYLVPLF 143 (276)
T ss_dssp ---------------------------------------------------------SSGGGSCSCCEECTTSCEEEEET
T ss_pred ---------------------------------------------------------CcccccccCceECCCCCEEEEec
Confidence 00000011233556776 56677
Q ss_pred CCCeEEEEcCCCCeeeEeecCCccEEEEE--EcCCEEEEEeeCCeEEEEeCC-Ccccccccccc------cCEEEEE--e
Q 003217 438 ANGLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS------SPVIKMA--V 506 (838)
Q Consensus 438 ~DgtIrlWD~~g~~l~tl~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~------~~V~sla--~ 506 (838)
.++.|..||.+|+.+-++..+. .+.++. ++|..+++++.++.|..+|.+ |+.+-.+..+. ..+.++. .
T Consensus 144 ~~~~v~~~d~~G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~ 222 (276)
T 3no2_A 144 ATSEVREIAPNGQLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ 222 (276)
T ss_dssp TTTEEEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT
T ss_pred CCCEEEEECCCCCEEEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC
Confidence 7899999999999998887643 333443 367888888888899999998 88766654332 2256655 4
Q ss_pred CCCEEEEE
Q 003217 507 GAGYIFTL 514 (838)
Q Consensus 507 dg~~l~S~ 514 (838)
+|..+++.
T Consensus 223 ~G~i~v~~ 230 (276)
T 3no2_A 223 NGGLYICN 230 (276)
T ss_dssp TSCEEEEE
T ss_pred CCCEEEEe
Confidence 66666655
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-07 Score=101.34 Aligned_cols=231 Identities=9% Similarity=0.025 Sum_probs=141.0
Q ss_pred CCeEEEEEcCCCCEEEE-------EeCCCcEEEEECCCCccCCCCCcceeEEec-----cccccEEEEEEecC-CCEEEe
Q 003217 192 SSVMCMVGDEASGVVWS-------GHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-----AHRGPVLSLCISSY-GDLWSG 258 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaS-------Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~-----gH~~~V~slafs~d-G~L~Sg 258 (838)
....+++++++|+++++ +..++.|.+||..++. ...+. +|...+.+++++++ |+||.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~---------~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~ 88 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK---------KTVICKPEVNGYGGIPAGCQCDRDANQLFVA 88 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC---------EEEEECCEETTEECCEEEEEECSSSSEEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc---------EEEEEecccCCCCCCCceEEEecCCCcEEEE
Confidence 35678999999988777 6788999999987752 22222 36678999999999 888877
Q ss_pred eCCCcEEEEECCCcceeeec-CCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC------
Q 003217 259 SEGGGIKIWPWEAIEKALSL-KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF------ 331 (838)
Q Consensus 259 S~DgtIrvWd~~~~~~~~~~-~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~------ 331 (838)
+.++.|.+||.+ ++.. .+ .... .+ .+...+..++.++++. +|.+..
T Consensus 89 ~~~~~l~~~d~~-g~~~-~~~~~~~---------------------~~---~~~~~~~~i~~d~~g~-l~v~~~~~~~~~ 141 (314)
T 1pjx_A 89 DMRLGLLVVQTD-GTFE-EIAKKDS---------------------EG---RRMQGCNDCAFDYEGN-LWITAPAGEVAP 141 (314)
T ss_dssp ETTTEEEEEETT-SCEE-ECCSBCT---------------------TS---CBCBCCCEEEECTTSC-EEEEECBCBCTT
T ss_pred ECCCCEEEEeCC-CCEE-EEEeccC---------------------CC---ccccCCcCEEECCCCC-EEEEecCccccc
Confidence 666689999986 3321 11 1000 00 0012244566666553 443321
Q ss_pred -----------CcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceee
Q 003217 332 -----------LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (838)
Q Consensus 332 -----------~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~ 400 (838)
..|..||.. +++....
T Consensus 142 ~~~~~~~~~~~~~l~~~~~~-g~~~~~~---------------------------------------------------- 168 (314)
T 1pjx_A 142 ADYTRSMQEKFGSIYCFTTD-GQMIQVD---------------------------------------------------- 168 (314)
T ss_dssp SCCCBTTSSSCEEEEEECTT-SCEEEEE----------------------------------------------------
T ss_pred ccccccccCCCCeEEEECCC-CCEEEec----------------------------------------------------
Confidence 122222221 2111000
Q ss_pred ecCCcEEEEeccCccccCCCceEEEEEc----CCCc-EEEE-ECCCeEEEEcCC--CC-----eeeEeecCC-ccEEEEE
Q 003217 401 GAADAVRRVAAKGGFGDDNRRTEALTTS----IDGM-IWTG-GANGLLLQWDPN--GN-----RLQDFQYLP-FAVQCLC 466 (838)
Q Consensus 401 g~~~~v~~v~~~g~~~~~~~~v~ala~S----~dg~-l~Sg-s~DgtIrlWD~~--g~-----~l~tl~~H~-~~V~sls 466 (838)
........++++ ++|. ++.+ ..++.|.+||.+ |+ ....+.++. ..+..++
T Consensus 169 ----------------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~ 232 (314)
T 1pjx_A 169 ----------------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD 232 (314)
T ss_dssp ----------------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred ----------------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE
Confidence 000112356677 8884 6555 457889999973 43 233344443 5567777
Q ss_pred Ec--CCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEE-EEcCCCCeeeeecCC
Q 003217 467 TF--GSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIF-TLANHGGIRGWNVTS 527 (838)
Q Consensus 467 ~d--G~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~-S~S~DgtIrlWdl~s 527 (838)
.+ |...++...++.|.+||.+ ++.+..+..+...+.++++ +++.|+ +...++.|..|++..
T Consensus 233 ~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 64 5444444468899999998 7777777778788999885 666454 556678899998764
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.00 E-value=6e-08 Score=105.41 Aligned_cols=233 Identities=12% Similarity=0.048 Sum_probs=142.0
Q ss_pred ceeEEEEecCCEEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 133 CFLRTIVCTEEQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 133 ~~~~~l~~~~~~l~~g~--d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
...+.++.+++.+|++. ++.|.+||.++...... + .+......++++++++ |+.+.
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~-----------------i----~~~~~p~~i~~~~~g~-lyv~~ 101 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGR-----------------I----TGFTSPRYIHFLSDEK-AYVTQ 101 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEE-----------------E----ECCSSEEEEEEEETTE-EEEEE
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEE-----------------c----CCCCCCcEEEEeCCCe-EEEEE
Confidence 34566777888899843 57999999987554321 1 1133577899988885 55555
Q ss_pred -CCCcEEEEECCCCccCCCCCcceeEEecccc-----ccEEEEEEecCCCEEEee--CCCcEEEEECCCcceeeecCCCc
Q 003217 211 -RDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-----GPVLSLCISSYGDLWSGS--EGGGIKIWPWEAIEKALSLKPEE 282 (838)
Q Consensus 211 -~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~-----~~V~slafs~dG~L~SgS--~DgtIrvWd~~~~~~~~~~~~~~ 282 (838)
.++.|.+||..++ +....+.... .....|++ .+++|+.+. .+++|.+||+++++....+...
T Consensus 102 ~~~~~v~~iD~~t~--------~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g- 171 (328)
T 3dsm_A 102 IWDYRIFIINPKTY--------EITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG- 171 (328)
T ss_dssp BSCSEEEEEETTTT--------EEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-
T ss_pred CCCCeEEEEECCCC--------eEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-
Confidence 8999999999986 3343443222 14456777 556676555 4899999999775422111100
Q ss_pred eeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC------------CcEEEEeccCccEEEEEec
Q 003217 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF------------LSFALWDARTRELLKVFNI 350 (838)
Q Consensus 283 ~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~------------~tI~lWD~~tg~~l~~l~~ 350 (838)
.....++.++++. +|.+.. ..|.++|..++++.+.+..
T Consensus 172 -----------------------------~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~ 221 (328)
T 3dsm_A 172 -----------------------------IQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF 221 (328)
T ss_dssp -----------------------------SCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC
T ss_pred -----------------------------CCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEec
Confidence 0011233444443 444332 4688888888776544321
Q ss_pred CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCC
Q 003217 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (838)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~d 430 (838)
.. ......++++||
T Consensus 222 ~~------------------------------------------------------------------g~~p~~la~~~d 235 (328)
T 3dsm_A 222 KL------------------------------------------------------------------GDWPSEVQLNGT 235 (328)
T ss_dssp CT------------------------------------------------------------------TCCCEEEEECTT
T ss_pred CC------------------------------------------------------------------CCCceeEEEecC
Confidence 00 012345778887
Q ss_pred Cc-EEEEECCCeEEEEcC-CCCeeeE--eecCCccEEEEEEc--CCEEEEEe-----eCCeEEEEeCCCccccccc
Q 003217 431 GM-IWTGGANGLLLQWDP-NGNRLQD--FQYLPFAVQCLCTF--GSQIWVGY-----MNGIVQVLDLEGNLLGGWV 495 (838)
Q Consensus 431 g~-l~Sgs~DgtIrlWD~-~g~~l~t--l~~H~~~V~sls~d--G~~LasGs-----~DgtIrlWD~~g~~i~~l~ 495 (838)
+. ++.+.. +|.+||. +++.... +..+......++.+ +.+|+++. .+++|.+||.+|+++.++.
T Consensus 236 ~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~ 309 (328)
T 3dsm_A 236 RDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFY 309 (328)
T ss_dssp SCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEE
T ss_pred CCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEE
Confidence 66 565543 7999999 5654321 22223566777763 55666664 5889999999988777664
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-08 Score=111.97 Aligned_cols=73 Identities=8% Similarity=-0.121 Sum_probs=53.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEE--EecCCCEEE-------------
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLC--ISSYGDLWS------------- 257 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~sla--fs~dG~L~S------------- 257 (838)
.+.+++|+|||+.|+.++.++.|++||+.++ +....+..|.+.+.... +++||+++.
T Consensus 82 ~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g--------~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~ 153 (388)
T 3pe7_A 82 NTFGGFLSPDDDALFYVKDGRNLMRVDLATL--------EENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLT 153 (388)
T ss_dssp CSSSCEECTTSSEEEEEETTTEEEEEETTTC--------CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred CccceEEcCCCCEEEEEeCCCeEEEEECCCC--------cceeeeechhhcccccceeECCCCCeeccccccCccccccc
Confidence 4446789999999999999999999999987 44455566666664443 489998443
Q ss_pred ----------eeCCCcEEEEECCCcc
Q 003217 258 ----------GSEGGGIKIWPWEAIE 273 (838)
Q Consensus 258 ----------gS~DgtIrvWd~~~~~ 273 (838)
.+.+..|.+||+.+++
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (388)
T 3pe7_A 154 DWKKFHEFYFTKPCCRLMRVDLKTGE 179 (388)
T ss_dssp SHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred ccchhhhhhccCCcceEEEEECCCCc
Confidence 2345789999987653
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.7e-06 Score=90.85 Aligned_cols=263 Identities=12% Similarity=0.107 Sum_probs=155.6
Q ss_pred eeEEEEecC-CEEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCTE-EQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~~-~~l~~g~--d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
..+.|+.+. ..+|++. ++.|.+||.. ...... ..... ...+.+++++++|++.++..
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~------------------~~~~~-~~~~~~i~~~~~g~l~v~~~ 80 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEF------------------EVPTP-DAKVMCLIVSSLGDIWFTEN 80 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE------------------ECSST-TCCEEEEEECTTSCEEEEET
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEE------------------ECCCC-CCcceeEEECCCCCEEEEec
Confidence 345677664 4788864 5789999976 221100 00001 34688999999998777666
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEee-CCCcEEEEECCCccee-eecCCCceeeeEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWPWEAIEKA-LSLKPEERHTAAL 288 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~DgtIrvWd~~~~~~~-~~~~~~~~~~~~~ 288 (838)
.++.|..+|.. +. .....+..+...+.+|+++++|+||.+. .++.|..++.+ ++.. +.+..
T Consensus 81 ~~~~v~~~d~~-g~-------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~-------- 143 (300)
T 2qc5_A 81 GANKIGKLSKK-GG-------FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPN-------- 143 (300)
T ss_dssp TTTEEEEECTT-SC-------EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSS--------
T ss_pred CCCeEEEECCC-CC-------eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCC--------
Confidence 68899999987 41 2222333344678999999999986544 47889999875 2211 11000
Q ss_pred EEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeecccCccc
Q 003217 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (838)
.......++.++++. +|.+. ...|..+|. +++... +..
T Consensus 144 ---------------------~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~---------------- 183 (300)
T 2qc5_A 144 ---------------------KGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEE-YPL---------------- 183 (300)
T ss_dssp ---------------------TTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EEC----------------
T ss_pred ---------------------CCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEE-eeC----------------
Confidence 012345667766655 55544 346777776 444321 100
Q ss_pred ccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEEC-CCeEEEE
Q 003217 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGA-NGLLLQW 445 (838)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~-DgtIrlW 445 (838)
......+..++++++|.+|.+.. .+.|.+|
T Consensus 184 -------------------------------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 214 (300)
T 2qc5_A 184 -------------------------------------------------PTNAAAPVGITSGNDGALWFVEIMGNKIGRI 214 (300)
T ss_dssp -------------------------------------------------SSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred -------------------------------------------------CCCCCCcceEEECCCCCEEEEccCCCEEEEE
Confidence 00012234677888899887764 4579999
Q ss_pred cCCCCeeeE-eecCCccEEEEEEcCC-EEEEEee-CCeEEEEeCCCcccc-cccccccCEEEEEeC--CCEEEEEcCCCC
Q 003217 446 DPNGNRLQD-FQYLPFAVQCLCTFGS-QIWVGYM-NGIVQVLDLEGNLLG-GWVAHSSPVIKMAVG--AGYIFTLANHGG 519 (838)
Q Consensus 446 D~~g~~l~t-l~~H~~~V~sls~dG~-~LasGs~-DgtIrlWD~~g~~i~-~l~gH~~~V~sla~d--g~~l~S~S~Dgt 519 (838)
|.+|+.... +..+...+.+++.+.. .||+++. ++.|..||.+++... .+..+...+.+|+.+ |+..++ +.. .
T Consensus 215 ~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~-~~~-~ 292 (300)
T 2qc5_A 215 TTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFA-LKC-K 292 (300)
T ss_dssp CTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEEE-CSS-E
T ss_pred cCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEEE-ccC-c
Confidence 997765443 2334566788877522 4666664 689999998765432 223334557777764 443333 333 5
Q ss_pred eeeee
Q 003217 520 IRGWN 524 (838)
Q Consensus 520 IrlWd 524 (838)
|..++
T Consensus 293 i~~~~ 297 (300)
T 2qc5_A 293 IGKLN 297 (300)
T ss_dssp EEEEE
T ss_pred eEEeC
Confidence 55444
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.93 E-value=4.4e-07 Score=94.31 Aligned_cols=225 Identities=8% Similarity=0.015 Sum_probs=134.2
Q ss_pred EEEEecC-CEEEE-e--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 136 RTIVCTE-EQLWA-G--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 136 ~~l~~~~-~~l~~-g--~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
..|+.+. +.||+ + .++.|++||..+..... .+ ..+...+.+++++++|+++++..
T Consensus 27 ~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~----------------~~----~~~~~~p~~i~~~~~g~l~v~~~- 85 (270)
T 1rwi_B 27 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV----------------LP----FNGLYQPQGLAVDGAGTVYVTDF- 85 (270)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEECC-----EE----------------CC----CCSCCSCCCEEECTTCCEEEEET-
T ss_pred cceEECCCCCEEEEccCCCCcEEEecCCCcccce----------------Ee----eCCcCCcceeEECCCCCEEEEcC-
Confidence 3556553 36887 5 46799999975432110 00 00123577899999988555555
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEec-cccccEEEEEEecCCCEE-EeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~L~-SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
++.|.+||..+. ....+. .....+.+|+++++|+|| +.+.++.|.+|+..+.........
T Consensus 86 ~~~i~~~d~~~~---------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~--------- 147 (270)
T 1rwi_B 86 NNRVVTLAAGSN---------NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT--------- 147 (270)
T ss_dssp TTEEEEECTTCS---------CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC---------
T ss_pred CCEEEEEeCCCc---------eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc---------
Confidence 889999998774 222232 233678999999999976 445678999997643221110000
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeecccCcccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
+ ......++.++++. +|.+. .+.|.+||..++......
T Consensus 148 ---------------~-----~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~------------------- 187 (270)
T 1rwi_B 148 ---------------G-----LNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLP------------------- 187 (270)
T ss_dssp ---------------S-----CCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECC-------------------
T ss_pred ---------------c-----CCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCceEeec-------------------
Confidence 0 01223456666554 55443 356788887654321100
Q ss_pred cccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEE-CCCeEEEEc
Q 003217 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANGLLLQWD 446 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs-~DgtIrlWD 446 (838)
......+..++++++|.+|.+. .++.|.+||
T Consensus 188 ------------------------------------------------~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~ 219 (270)
T 1rwi_B 188 ------------------------------------------------FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL 219 (270)
T ss_dssp ------------------------------------------------CSSCCSEEEEEECTTCCEEEEETTTSCEEEEC
T ss_pred ------------------------------------------------ccCCCCceEEEECCCCCEEEEECCCCcEEEEc
Confidence 0001224467888999987766 467899999
Q ss_pred CCCCeeeEee-cCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 447 PNGNRLQDFQ-YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 447 ~~g~~l~tl~-~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
..+.....+. .+...+.+++. +|+.+++...++.|+++++.
T Consensus 220 ~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 220 AGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp TTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred CCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 9765443333 33456788876 46655566679999999976
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.9e-07 Score=101.40 Aligned_cols=315 Identities=10% Similarity=0.088 Sum_probs=168.6
Q ss_pred EecCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeE-EEEEcCCCCEEEEEeCCCcEE
Q 003217 139 VCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVM-CMVGDEASGVVWSGHRDGRIM 216 (838)
Q Consensus 139 ~~~~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~-~la~s~dg~~LaSGs~DGtIr 216 (838)
+..++.+|+++ ++.|..+|.+++...... .. +... .... .. ...+. .++. +++.|+.++.|+.+.
T Consensus 50 ~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~---~~----~~~~--~~~~-~~-~~~~~~~~~~--~~~~v~v~~~~g~l~ 116 (376)
T 3q7m_A 50 ALADNVVYAADRAGLVKALNADDGKEIWSV---SL----AEKD--GWFS-KE-PALLSGGVTV--SGGHVYIGSEKAQVY 116 (376)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEE---EC----CC-----CCS-CC-CCCEEEEEEE--ETTEEEEEETTSEEE
T ss_pred EEECCEEEEEcCCCeEEEEEccCCceeeee---cC----cccc--cccc-cc-CcccccCceE--eCCEEEEEcCCCEEE
Confidence 34577888865 679999999876544320 00 0000 0000 00 11222 2333 357899999999999
Q ss_pred EEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceee
Q 003217 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (838)
Q Consensus 217 vWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 296 (838)
.+|..+| +.......+.....+.+. .++.++.++.++.|..+|..+++............ .
T Consensus 117 a~d~~tG--------~~~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~----------~ 177 (376)
T 3q7m_A 117 ALNTSDG--------TVAWQTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL----------S 177 (376)
T ss_dssp EEETTTC--------CEEEEEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC--------------
T ss_pred EEECCCC--------CEEEEEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce----------e
Confidence 9999987 444333322211111222 35678899999999999998876554432211000 0
Q ss_pred cccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeE
Q 003217 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (838)
Q Consensus 297 l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (838)
.+.. .. .+.. +..|+.+. ++.+..+|+.+|+.+-.+....... ........+..
T Consensus 178 ~~~~----------~~----~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~-~~~~~~~~~~~-------- 232 (376)
T 3q7m_A 178 LRGE----------SA----PTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATG-STEIDRLSDVD-------- 232 (376)
T ss_dssp -CCC----------CC----CEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC------------CCC--------
T ss_pred ecCC----------CC----cEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCC-CcccccccccC--------
Confidence 0000 00 1111 34566665 4679999999999876654321100 00000000000
Q ss_pred EEecCCCCcceeeeeEeecCcceeeecC-CcEEEEec-cCccc--cCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCC
Q 003217 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRVAA-KGGFG--DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGN 450 (838)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~-~~v~~v~~-~g~~~--~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~ 450 (838)
.. ... ....++++.. ..+..+.. .|... ........++. .++.++.++.++.|..+|. +|+
T Consensus 233 ---~~---------p~~-~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~-~~~~l~~~~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 233 ---TT---------PVV-VNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIV-DGNRIYLVDQNDRVMALTIDGGV 298 (376)
T ss_dssp ---CC---------CEE-ETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEE-ETTEEEEEETTCCEEEEETTTCC
T ss_pred ---CC---------cEE-ECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceE-ECCEEEEEcCCCeEEEEECCCCc
Confidence 00 000 0112233322 22333332 12111 11122233333 3678999999999999999 788
Q ss_pred eeeEee-cCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEE-EEeCCCEEEEEcCCCCeeeee
Q 003217 451 RLQDFQ-YLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-MAVGAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 451 ~l~tl~-~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s-la~dg~~l~S~S~DgtIrlWd 524 (838)
.+-... .....+.+....+.+|++++.+|.|.++|.+ |+.+.....+...+.+ ....+..++.++.||.|..|+
T Consensus 299 ~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 299 TLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred EEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 765554 2222333444567899999999999999986 7766555543333332 234567788899999998886
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.88 E-value=9.3e-08 Score=114.86 Aligned_cols=71 Identities=11% Similarity=-0.105 Sum_probs=51.4
Q ss_pred EEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeC
Q 003217 195 MCMVGDEASGVVWSGHRDGR-------------IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE 260 (838)
Q Consensus 195 ~~la~s~dg~~LaSGs~DGt-------------IrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~ 260 (838)
..++|+|||+.|+.++.|.. |++|++.++.. ....+....+|...+.+++|||||+ |+.++.
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~----~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~ 246 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS----KDTVVHERTGDPTTFLQSDLSRDGKYLFVYIL 246 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG----GCEEEECCCCCTTCEEEEEECTTSCCEEEEEE
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch----hceEEEecCCCCEEEEEEEECCCCCEEEEEEe
Confidence 56899999999999999887 99999988620 0012333445777899999999998 665554
Q ss_pred CC----cEEEEEC
Q 003217 261 GG----GIKIWPW 269 (838)
Q Consensus 261 Dg----tIrvWd~ 269 (838)
++ .|.+|+.
T Consensus 247 ~~~~~~~l~~~~~ 259 (695)
T 2bkl_A 247 RGWSENDVYWKRP 259 (695)
T ss_dssp ETTTEEEEEEECT
T ss_pred CCCCceEEEEEcC
Confidence 44 4555544
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2e-06 Score=100.84 Aligned_cols=271 Identities=12% Similarity=0.058 Sum_probs=157.0
Q ss_pred EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003217 144 QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (838)
Q Consensus 144 ~l~~--g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~ 221 (838)
.+++ ..++.|.++|.++...... +.....+.+++++|||++|++++.|+.|.+||+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~---------------------i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~ 226 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTV---------------------LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLW 226 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE---------------------EECSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEE---------------------EeCCCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence 4554 3478999999977543221 1102256689999999999999999999999996
Q ss_pred --CCccCCCCCcceeEEeccccccEEEEEEe----cCCC-EE-EeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeec
Q 003217 222 --ARLLDSDDGFGEVLSWQAHRGPVLSLCIS----SYGD-LW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (838)
Q Consensus 222 --~g~~~~~~~~~~~~~l~gH~~~V~slafs----~dG~-L~-SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (838)
++ +...++....+ -..++|| |||+ ++ +...+++|.|+|..+.+....+...
T Consensus 227 ~~t~--------~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~------------ 285 (567)
T 1qks_A 227 MKEP--------TTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR------------ 285 (567)
T ss_dssp SSSC--------CEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC------------
T ss_pred CCCC--------cEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecc------------
Confidence 53 44455544333 4689999 6998 55 5556799999998775432211100
Q ss_pred eeecccceeccceeeeecCCeEEEEEcCCCCEEE-EeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccc
Q 003217 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDE 371 (838)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~-s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~ 371 (838)
+. ...+....+...+..+..++.+..++ +.. .+.|.++|..+.+.+++-.
T Consensus 286 -----~~-~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~---------------------- 337 (567)
T 1qks_A 286 -----GM-TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE---------------------- 337 (567)
T ss_dssp -----EE-CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE----------------------
T ss_pred -----cc-ccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee----------------------
Confidence 00 00000011122344555555443322 222 2455566654433211100
Q ss_pred eeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEE-CCCeEEEEcC-C
Q 003217 372 FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP-N 448 (838)
Q Consensus 372 ~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs-~DgtIrlWD~-~ 448 (838)
+ ........+.+++||+ +++++ .+++|.++|. +
T Consensus 338 -----i---------------------------------------~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t 373 (567)
T 1qks_A 338 -----I---------------------------------------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 373 (567)
T ss_dssp -----E---------------------------------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred -----e---------------------------------------eccccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence 0 0001123466889987 44444 5778999999 6
Q ss_pred CCeeeEeec-----CCc-cEEEEEEcCCEEEEEe--eCCeEEEEeCCC--------cccccccccccC-E-EEEEeCCCE
Q 003217 449 GNRLQDFQY-----LPF-AVQCLCTFGSQIWVGY--MNGIVQVLDLEG--------NLLGGWVAHSSP-V-IKMAVGAGY 510 (838)
Q Consensus 449 g~~l~tl~~-----H~~-~V~sls~dG~~LasGs--~DgtIrlWD~~g--------~~i~~l~gH~~~-V-~sla~dg~~ 510 (838)
++.+..+.. |.+ .+.-+.+++..+|+.+ .+++|.++|... +.++++.+.... + ....+++++
T Consensus 374 ~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~ 453 (567)
T 1qks_A 374 GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQY 453 (567)
T ss_dssp TEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSE
T ss_pred CcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCe
Confidence 776665543 543 3333455666676654 368999999752 345555543222 1 223467777
Q ss_pred EEEEcC-------CCCeeeeecCCC
Q 003217 511 IFTLAN-------HGGIRGWNVTSP 528 (838)
Q Consensus 511 l~S~S~-------DgtIrlWdl~s~ 528 (838)
++.... ..+|.++|+.+.
T Consensus 454 l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 454 LYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEEecCCCCCcccCceEEEEECCcc
Confidence 775442 359999998765
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.1e-06 Score=85.97 Aligned_cols=229 Identities=13% Similarity=0.137 Sum_probs=141.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEee-CCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~DgtIrvWd~ 269 (838)
...+.+++++++|++.++...++.|.+||.. +. .....+..+...+.+|+++++|.||.+. .++.|.++|.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~ 90 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR-------IKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSK 90 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-------EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc-------eEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECC
Confidence 3468899999998877666678999999987 42 1122333445679999999999987554 4788999987
Q ss_pred CCccee-eecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEE
Q 003217 270 EAIEKA-LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLK 346 (838)
Q Consensus 270 ~~~~~~-~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~ 346 (838)
. ++.. +.... . ......++.++++. +|.+. .+.|..+|.. ++...
T Consensus 91 ~-g~~~~~~~~~-------------------~----------~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~ 138 (300)
T 2qc5_A 91 K-GGFTEYPLPQ-------------------P----------DSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYE 138 (300)
T ss_dssp T-SCEEEEECSS-------------------T----------TCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEE
T ss_pred C-CCeEEecCCC-------------------C----------CCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEE
Confidence 5 2211 11000 0 12345666665554 44443 3467777765 44321
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
+.. ......+..++
T Consensus 139 -~~~-----------------------------------------------------------------~~~~~~~~~i~ 152 (300)
T 2qc5_A 139 -YDL-----------------------------------------------------------------PNKGSYPAFIT 152 (300)
T ss_dssp -EEC-----------------------------------------------------------------SSTTCCEEEEE
T ss_pred -ccC-----------------------------------------------------------------CCCCCCceeEE
Confidence 100 00011234677
Q ss_pred EcCCCcEEEEEC-CCeEEEEcCCCCeeeE-eecCCccEEEEEEcC-CEEEEEe-eCCeEEEEeCCCcccc-cccccccCE
Q 003217 427 TSIDGMIWTGGA-NGLLLQWDPNGNRLQD-FQYLPFAVQCLCTFG-SQIWVGY-MNGIVQVLDLEGNLLG-GWVAHSSPV 501 (838)
Q Consensus 427 ~S~dg~l~Sgs~-DgtIrlWD~~g~~l~t-l~~H~~~V~sls~dG-~~LasGs-~DgtIrlWD~~g~~i~-~l~gH~~~V 501 (838)
++++|.+|.+.. ++.|.++|.+++.... +..+...+.+++.+. ..||.+. ..+.|.+||..++... .+..+...+
T Consensus 153 ~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~ 232 (300)
T 2qc5_A 153 LGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARP 232 (300)
T ss_dssp ECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCE
T ss_pred ECCCCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCc
Confidence 888898887764 6789999997765432 123445678887752 2566655 4678999999765433 233455678
Q ss_pred EEEEeC--CCEEEEEcCCCCeeeeec
Q 003217 502 IKMAVG--AGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 502 ~sla~d--g~~l~S~S~DgtIrlWdl 525 (838)
.+|+.+ |+..++...++.|..|+.
T Consensus 233 ~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 233 HAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EEEEECSTTCEEEEETTTTEEEEECT
T ss_pred eEEEECCCCCEEEeccCCCeEEEECC
Confidence 888864 554455555788888875
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=5e-07 Score=108.68 Aligned_cols=93 Identities=5% Similarity=0.018 Sum_probs=65.5
Q ss_pred CEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCc----------------E
Q 003217 152 GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGR----------------I 215 (838)
Q Consensus 152 ~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGt----------------I 215 (838)
.|++||+++..... ..+. ...+.+++|+|||+.|+.++.|+. |
T Consensus 152 ~i~v~d~~tg~~~~--------------------~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v 210 (710)
T 2xdw_A 152 TIKFMKVDGAKELP--------------------DVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKL 210 (710)
T ss_dssp EEEEEETTTTEEEE--------------------EEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEE
T ss_pred EEEEEECCCCCCCc--------------------cccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEE
Confidence 89999997654321 1111 123667999999999999998876 9
Q ss_pred EEEECCCCccCCCCCcceeEEe--ccccccEEEEEEecCCC-EEEeeC-----CCcEEEEECCC
Q 003217 216 MCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGD-LWSGSE-----GGGIKIWPWEA 271 (838)
Q Consensus 216 rvWd~~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG~-L~SgS~-----DgtIrvWd~~~ 271 (838)
.+|++.++.. +....+ ..|...+.++.|||||+ |+.++. +..|.+||+.+
T Consensus 211 ~~~~l~t~~~------~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 211 YYHVLGTDQS------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp EEEETTSCGG------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred EEEECCCCcc------cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 9999988620 112333 34667789999999998 654443 67899999865
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.80 E-value=2.1e-06 Score=91.04 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=52.6
Q ss_pred eEEEEEcCCCcEEEEE-CCCeEEEEcCC-CCeeeEeecCCccEEEEEE--cCCEEEEEee-CCeEEEEeCC
Q 003217 422 TEALTTSIDGMIWTGG-ANGLLLQWDPN-GNRLQDFQYLPFAVQCLCT--FGSQIWVGYM-NGIVQVLDLE 487 (838)
Q Consensus 422 v~ala~S~dg~l~Sgs-~DgtIrlWD~~-g~~l~tl~~H~~~V~sls~--dG~~LasGs~-DgtIrlWD~~ 487 (838)
+..++++++|.+|.+. .++.|.+||.+ |+.+..+..+...+.++++ +|++||+++. ++.|..||++
T Consensus 228 p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 3457888999987765 67889999995 8888888877788888876 6777887664 6799999976
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-07 Score=99.46 Aligned_cols=256 Identities=11% Similarity=0.081 Sum_probs=152.4
Q ss_pred eeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 003217 134 FLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (838)
Q Consensus 134 ~~~~l~~~-~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~D 212 (838)
.+.++..+ ++.+|+++++ |..+|. +...... . + .. .....+.++. ++.||.|+.+
T Consensus 61 ~~~~~~~~~~g~l~v~t~~-l~~~d~-~g~~~~~------------~---~----~~-~~~~~~~~~~--~~~l~v~t~~ 116 (330)
T 3hxj_A 61 IECRPSIGKDGTIYFGSDK-VYAINP-DGTEKWR------------F---D----TK-KAIVSDFTIF--EDILYVTSMD 116 (330)
T ss_dssp EEECCEETTTTEECCSSCE-EEEECC-CGGGGGG------------S---C----C------CCEEEE--TTEEEEECTT
T ss_pred cccceEEecCCcEEEecCc-EEEECC-CCcEEEE------------E---E----CC-CCcccCceEE--CCEEEEEecC
Confidence 34566665 5699998877 888885 3322211 0 0 00 1111112222 5789999999
Q ss_pred CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEee
Q 003217 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (838)
Q Consensus 213 GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (838)
+.+..+|.. + +.......+...+.++++.++|.||.|+.++.|..+|.. ++........
T Consensus 117 ~~l~~~d~~-g--------~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~----------- 175 (330)
T 3hxj_A 117 GHLYAINTD-G--------TEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTN----------- 175 (330)
T ss_dssp SEEEEECTT-S--------CEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECS-----------
T ss_pred CEEEEEcCC-C--------CEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecC-----------
Confidence 999999988 5 344444455566778888889999999999999999986 3322221100
Q ss_pred ceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccce
Q 003217 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (838)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (838)
...+..++.+. +..||.++ +.+..+| .+++.+..+........ ....+.
T Consensus 176 ------------------~~~~~~~~~d~-~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~--------~~~~~~-- 224 (330)
T 3hxj_A 176 ------------------DAITSAASIGK-DGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTVT--------RPAISE-- 224 (330)
T ss_dssp ------------------SCCCSCCEECT-TCCEEEES-SSEEEEC-TTSCEEEEECCSSCCCS--------CCEECT--
T ss_pred ------------------CCceeeeEEcC-CCEEEEEe-CEEEEEC-CCCcEEEEEccCCccee--------ceEECC--
Confidence 11122233333 44577777 8899999 77776554432111000 000000
Q ss_pred eeEEEecCCCCcceeeeeEeecCcceeeecC-CcEEEEeccCcc----ccCCCceEEEEEcCCCcEEEEECCCeEEEEcC
Q 003217 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRVAAKGGF----GDDNRRTEALTTSIDGMIWTGGANGLLLQWDP 447 (838)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~-~~v~~v~~~g~~----~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~ 447 (838)
...+++++. .++.++...+.. ......+.++++.++|.||.++.+|.|..+|.
T Consensus 225 ----------------------~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 225 ----------------------DGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp ----------------------TSCEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT
T ss_pred ----------------------CCeEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC
Confidence 112344433 344444322211 11111223455677899999999988999999
Q ss_pred CCCeeeEeecCCccEEEEEE-cCCEEEEEeeCCeEEEEeCC
Q 003217 448 NGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 448 ~g~~l~tl~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~ 487 (838)
+|+.+..+......+.++.. .+..||.|+.+|.+++...+
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 283 DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC-
T ss_pred CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEecc
Confidence 88877777665666777777 35579999999999988764
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.79 E-value=5.1e-07 Score=96.69 Aligned_cols=69 Identities=14% Similarity=0.061 Sum_probs=55.0
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeC-CCcEEEEEC
Q 003217 192 SSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSE-GGGIKIWPW 269 (838)
Q Consensus 192 ~~V~~la~s~dg~-~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~-DgtIrvWd~ 269 (838)
......+++++|+ ++|++..++.|..|+..+ + ...+..+.+.+.+++++++|+||.+.. ++.|.+|+.
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g---------~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG---------T-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETTS---------C-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCCC---------C-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 3556788999998 889999999999999843 2 344556677899999999999887765 478999987
Q ss_pred C
Q 003217 270 E 270 (838)
Q Consensus 270 ~ 270 (838)
+
T Consensus 115 ~ 115 (305)
T 3dr2_A 115 D 115 (305)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.9e-07 Score=99.90 Aligned_cols=107 Identities=9% Similarity=-0.080 Sum_probs=67.6
Q ss_pred CCCceEEEEEcC-CCc-EEEEECC------CeEEEEcCCCCeeeEeecCC--ccEEEE--EEcCCEEEEEeeC-----Ce
Q 003217 418 DNRRTEALTTSI-DGM-IWTGGAN------GLLLQWDPNGNRLQDFQYLP--FAVQCL--CTFGSQIWVGYMN-----GI 480 (838)
Q Consensus 418 ~~~~v~ala~S~-dg~-l~Sgs~D------gtIrlWD~~g~~l~tl~~H~--~~V~sl--s~dG~~LasGs~D-----gt 480 (838)
+...+..+.++| ||. |+..+.+ ..|.+||+.+...+.+..+. ..+..+ ++||++|+.++.+ +.
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 265 (396)
T 3c5m_A 186 DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV 265 (396)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEE
T ss_pred CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccce
Confidence 344567788999 676 6665543 35888898665555554432 245555 4579887777654 56
Q ss_pred EEEEeCC-Ccc--cccccccccCEEEEEe-CCCEEEEEc----------------CCCCeeeeecCC
Q 003217 481 VQVLDLE-GNL--LGGWVAHSSPVIKMAV-GAGYIFTLA----------------NHGGIRGWNVTS 527 (838)
Q Consensus 481 IrlWD~~-g~~--i~~l~gH~~~V~sla~-dg~~l~S~S----------------~DgtIrlWdl~s 527 (838)
|++||++ ++. +..+.++. ....+ ||+.++.++ .+..|.+||+..
T Consensus 266 l~~~d~~~g~~~~l~~~~~~~---~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 266 IYKANPETLENEEVMVMPPCS---HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp EEEECTTTCCEEEEEECCSEE---EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred EEEEECCCCCeEEeeeCCCCC---CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 9999987 443 22233332 33456 889888654 346788888754
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.75 E-value=6.7e-07 Score=108.22 Aligned_cols=231 Identities=9% Similarity=0.010 Sum_probs=133.2
Q ss_pred CeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCc---
Q 003217 193 SVMCMVGDEASGVVWSGHRD-----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG--- 263 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~D-----GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt--- 263 (838)
.+..++|||||++|+.++.+ .+|++||++++. .. ....+...+.+++|+|| + |+.++.|+.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~--------~~-~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~ 233 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK--------PL-ADELKWVKFSGLAWLGN-DALLYSRFAEPKEG 233 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC--------EE-EEEEEEEESCCCEESTT-SEEEEEECCCC---
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC--------CC-CccCCCceeccEEEECC-CEEEEEEecCcccc
Confidence 67889999999999887765 369999999972 22 22112222357899999 7 777776654
Q ss_pred -----------EEEEECCCcce--eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC
Q 003217 264 -----------IKIWPWEAIEK--ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG 330 (838)
Q Consensus 264 -----------IrvWd~~~~~~--~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s 330 (838)
|++|++.+... .+.+.... + ...+..+..++++..|+..+
T Consensus 234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~-----------------~----------~~~~~~~~~SpDG~~l~~~~ 286 (741)
T 1yr2_A 234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPE-----------------L----------PKRGHGASVSSDGRWVVITS 286 (741)
T ss_dssp -----CCCCCEEEEEETTSCGGGCEEEECCTT-----------------C----------TTCEEEEEECTTSCEEEEEE
T ss_pred cccccCCCCCEEEEEECCCCchhCEEEeccCC-----------------C----------CeEEEEEEECCCCCEEEEEE
Confidence 88888865431 11111000 0 00133444555665444322
Q ss_pred -C-----CcEEEEeccCc--cEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeec
Q 003217 331 -F-----LSFALWDARTR--ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA 402 (838)
Q Consensus 331 -~-----~tI~lWD~~tg--~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~ 402 (838)
+ ..|.+||+.++ ++.+.+..+..
T Consensus 287 ~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~------------------------------------------------- 317 (741)
T 1yr2_A 287 SEGTDPVNTVHVARVTNGKIGPVTALIPDLK------------------------------------------------- 317 (741)
T ss_dssp ECTTCSCCEEEEEEEETTEECCCEEEECSSS-------------------------------------------------
T ss_pred EccCCCcceEEEEECCCCCCcccEEecCCCC-------------------------------------------------
Confidence 2 25788888766 20122211000
Q ss_pred CCcEEEEeccCccccCCCceEEEEEcCCC-cEEEEEC----CCeEEEEcCCC--CeeeEee-cCCccEEEEEEcCC-EEE
Q 003217 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGA----NGLLLQWDPNG--NRLQDFQ-YLPFAVQCLCTFGS-QIW 473 (838)
Q Consensus 403 ~~~v~~v~~~g~~~~~~~~v~ala~S~dg-~l~Sgs~----DgtIrlWD~~g--~~l~tl~-~H~~~V~sls~dG~-~La 473 (838)
.+.... +++| .|+..+. ++.|.+||+.+ ...+++. .+...+.++++++. .++
T Consensus 318 ------------------~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~ 378 (741)
T 1yr2_A 318 ------------------AQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFA 378 (741)
T ss_dssp ------------------SCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEE
T ss_pred ------------------ceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEE
Confidence 000111 1333 3544443 34599999843 3444444 44455666766554 667
Q ss_pred EEeeCCeEEEEe--CCCccccccccc-ccCEEEEE--eCCCEEE----EEcCCCCeeeeecCCC
Q 003217 474 VGYMNGIVQVLD--LEGNLLGGWVAH-SSPVIKMA--VGAGYIF----TLANHGGIRGWNVTSP 528 (838)
Q Consensus 474 sGs~DgtIrlWD--~~g~~i~~l~gH-~~~V~sla--~dg~~l~----S~S~DgtIrlWdl~s~ 528 (838)
+...|+..+||. ++|+..+.+..+ .+.|..+. ++++.++ |..+.++|.+||+.+.
T Consensus 379 ~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 379 SYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 777898887775 557766666654 56677776 4666555 4456789999997653
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.73 E-value=4.5e-06 Score=101.20 Aligned_cols=318 Identities=15% Similarity=0.202 Sum_probs=176.2
Q ss_pred eeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 003217 134 FLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (838)
Q Consensus 134 ~~~~l~~~-~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~D 212 (838)
.+++|..+ .+.||+|++++|.++|..+...... ......+ ..+. .+.|.|+..|.+| .||.|+..
T Consensus 233 ~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~~~~----------~~~~~~~--~~l~-~~~i~~i~~D~~g-~lWiGT~~ 298 (758)
T 3ott_A 233 SIKSLALDGNGDLLAGTDNGLYVYHNDTTPLQHI----------IHDSRNI--QSLT-NNIIWNIFADQEH-NIWLGTDY 298 (758)
T ss_dssp EEEEEEECTTCCEEEEETTEEEEECCTTSCCEEE----------CCCTTCT--TSCS-CSCEEEEEECTTC-CEEEEESS
T ss_pred eEEEEEEcCCCCEEEEeCCceeEEecCCCcEEEE----------EcCCCCc--CcCC-cCeEEEEEEcCCC-CEEEEeCC
Confidence 46677776 4499999999999998754321100 0000011 1233 5679999999765 58999988
Q ss_pred CcEEEEECCCCccCCCCCcceeEEec-----cccccEEEEEEecCCCEEEeeCCCcEEEEECCCcc-eeeecCCCceeee
Q 003217 213 GRIMCWKMNARLLDSDDGFGEVLSWQ-----AHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE-KALSLKPEERHTA 286 (838)
Q Consensus 213 GtIrvWd~~~g~~~~~~~~~~~~~l~-----gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~-~~~~~~~~~~~~~ 286 (838)
| +-+...... ++. .... .....|.++..+++|.||.|+.+| +-.++..++. ..+....
T Consensus 299 G-l~~~~~~~~-------~~~-~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~------ 362 (758)
T 3ott_A 299 G-ISLSRYNSA-------LQF-IPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYR------ 362 (758)
T ss_dssp S-EEEECCCC--------CEE-EEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEEC------
T ss_pred c-ccccccCCc-------eeE-EecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEec------
Confidence 8 433332211 111 1111 123579999999999999998665 5555543321 1111000
Q ss_pred EEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCccc
Q 003217 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (838)
Q Consensus 287 ~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (838)
+. .....++...|.+++.+. ...||.|+++++..+|..++++.......... ..+...
T Consensus 363 -------------~~--~~~~~l~~~~v~~i~~d~-~g~lWigt~~GL~~~~~~~~~~~~~~~~~~~~----~~~~~~-- 420 (758)
T 3ott_A 363 -------------MG--DKTYPLSHNRIRHIYEDK-EQQLWIATDGSINRYDYATRQFIHYNIVDNTG----TYNTNW-- 420 (758)
T ss_dssp -------------TT--CSSSCCSCSCEEEEEECT-TSCEEEEETTEEEEEETTTTEEEEEEEECCC------CBSSS--
T ss_pred -------------cC--CcCCCCCCCceEEEEECC-CCCEEEEeCCcHhhcCcCCCcEEEeecCCCcC----CCCCce--
Confidence 00 000012244577777664 45789888889999999988764321111100 000000
Q ss_pred ccccceeeEEEecCCCCcceeeeeEe-ecCcceeeecC-CcEEEEecc-------Cccc---------c-CCCceEEEEE
Q 003217 367 AMEDEFKTKIVTSSKKDKAQSSFGFF-QRSRNAIMGAA-DAVRRVAAK-------GGFG---------D-DNRRTEALTT 427 (838)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~-~~~~~~~~g~~-~~v~~v~~~-------g~~~---------~-~~~~v~ala~ 427 (838)
+ .... +....+|+|+. .|+.++... +.+. + ....|.++..
T Consensus 421 -----v----------------~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~ 479 (758)
T 3ott_A 421 -----T----------------YYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIP 479 (758)
T ss_dssp -----E----------------EEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEE
T ss_pred -----E----------------EEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEE
Confidence 0 0111 11234677774 467766532 1111 0 1235888999
Q ss_pred cCCCcEEE--EECCCeEEEEcCCCCeeeEeec----CCccEEEEEEcC-CEEEEEeeCCeEEEEeCCCcccccc---ccc
Q 003217 428 SIDGMIWT--GGANGLLLQWDPNGNRLQDFQY----LPFAVQCLCTFG-SQIWVGYMNGIVQVLDLEGNLLGGW---VAH 497 (838)
Q Consensus 428 S~dg~l~S--gs~DgtIrlWD~~g~~l~tl~~----H~~~V~sls~dG-~~LasGs~DgtIrlWD~~g~~i~~l---~gH 497 (838)
+++|.||. |+.+| |..+|.....+..+.. ....|.++..|. ..||.|+. +.|..+|..+.....+ ...
T Consensus 480 d~~g~lWi~~~t~~G-l~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~ 557 (758)
T 3ott_A 480 DNEGNVWVLLYNNKG-IDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFS 557 (758)
T ss_dssp CTTSCEEEEETTCSS-EEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC--
T ss_pred cCCCCEEEEccCCCC-cEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEec-CceEEEecCCCceEEecccCCC
Confidence 99999997 55455 8889985444444421 134688888874 48888886 4688899864333222 123
Q ss_pred ccCEEEEEeCCCEEEEEcCCCCeeeeecCC
Q 003217 498 SSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 498 ~~~V~sla~dg~~l~S~S~DgtIrlWdl~s 527 (838)
...|.+|..+.. .++.++++.|..++..+
T Consensus 558 ~~~i~~i~~~~g-~lWi~t~~Gl~~~~~~~ 586 (758)
T 3ott_A 558 NNEILSMTCVKN-SIWVSTTNGLWIIDRKT 586 (758)
T ss_dssp -CCEEEEEEETT-EEEEEESSCEEEEETTT
T ss_pred ccceEEEEECCC-CEEEECCCCeEEEcCCC
Confidence 456888876533 34455566787787543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.73 E-value=2.9e-06 Score=90.43 Aligned_cols=207 Identities=14% Similarity=0.186 Sum_probs=123.6
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcc
Q 003217 195 MCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 195 ~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~ 273 (838)
-+.+|+++ +.++|+...++.|..||..++. ...+ .+...+.+++++++|+||.+. ++.|.+||.++++
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~---------~~~~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ---------VQRV-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQS 84 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCC---------EEEE-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTE
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCCCc---------EEEE-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCc
Confidence 35678884 6788888899999999998852 2222 235689999999999988776 5689999987643
Q ss_pred eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCC-----------cEEEEeccC-
Q 003217 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-----------SFALWDART- 341 (838)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~-----------tI~lWD~~t- 341 (838)
......... . . +......++.++++. +|.++.. .-.||.+..
T Consensus 85 ~~~~~~~~~-----------------~-~-------~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~ 138 (297)
T 3g4e_A 85 AVVLATVDN-----------------D-K-------KNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD 138 (297)
T ss_dssp EEEEEECCT-----------------T-C-------SSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT
T ss_pred EEEEEecCC-----------------C-C-------CCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC
Confidence 211000000 0 0 011234566666554 5543210 011111100
Q ss_pred ccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCc
Q 003217 342 RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (838)
Q Consensus 342 g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~ 421 (838)
++. ..+ ......
T Consensus 139 g~~--------------------------------------------------------------~~~------~~~~~~ 150 (297)
T 3g4e_A 139 HHV--------------------------------------------------------------KKY------FDQVDI 150 (297)
T ss_dssp SCE--------------------------------------------------------------EEE------EEEESB
T ss_pred CCE--------------------------------------------------------------EEE------eecccc
Confidence 000 000 001112
Q ss_pred eEEEEEcCCCc-E-EEEECCCeEEEEcC---CCCe-----eeEeecCCccEEEEEEc--CCEEEEEe-eCCeEEEEeCC-
Q 003217 422 TEALTTSIDGM-I-WTGGANGLLLQWDP---NGNR-----LQDFQYLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLE- 487 (838)
Q Consensus 422 v~ala~S~dg~-l-~Sgs~DgtIrlWD~---~g~~-----l~tl~~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~- 487 (838)
...++++||++ | ++.+.++.|.+||. +|.. +..+..+......++.| | .||++. .++.|.+||.+
T Consensus 151 pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 151 SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVT 229 (297)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTT
T ss_pred ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCC
Confidence 34688999986 5 45556788999985 3543 22233334556677764 5 566655 46789999997
Q ss_pred CcccccccccccCEEEEEeC
Q 003217 488 GNLLGGWVAHSSPVIKMAVG 507 (838)
Q Consensus 488 g~~i~~l~gH~~~V~sla~d 507 (838)
|+++..+..+...++++++.
T Consensus 230 G~~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 230 GKRLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp CCEEEEEECSSSBEEEEEEE
T ss_pred ceEEEEEECCCCCceEEEEe
Confidence 89888888887889998874
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.6e-07 Score=96.17 Aligned_cols=181 Identities=12% Similarity=0.028 Sum_probs=118.2
Q ss_pred cCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC
Q 003217 251 SYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG 330 (838)
Q Consensus 251 ~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s 330 (838)
|+..|++++.|+.|.+||.++++...++..+. ...+..++..+++..++ +.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~----------------------------~~~~~~~~~~pdG~ilv-s~ 54 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK----------------------------GWECNSVAATKAGEILF-SY 54 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCT----------------------------TCCCCEEEECTTSCEEE-EC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc----------------------------cCCCcCeEECCCCCEEE-eC
Confidence 43347899999999999998876554443211 01233455566666665 44
Q ss_pred CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEe
Q 003217 331 FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA 410 (838)
Q Consensus 331 ~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~ 410 (838)
+..|..||. +|+.+..+..+..
T Consensus 55 ~~~V~~~d~-~G~~~W~~~~~~~--------------------------------------------------------- 76 (276)
T 3no2_A 55 SKGAKMITR-DGRELWNIAAPAG--------------------------------------------------------- 76 (276)
T ss_dssp BSEEEEECT-TSCEEEEEECCTT---------------------------------------------------------
T ss_pred CCCEEEECC-CCCEEEEEcCCCC---------------------------------------------------------
Confidence 678999998 7887665532100
Q ss_pred ccCccccCCCceEEEEEcCCCcE-EEEEC-CCeEEEEcCCCCeeeEeec------CCccEE--EEEEcCCEEEEEeeCCe
Q 003217 411 AKGGFGDDNRRTEALTTSIDGMI-WTGGA-NGLLLQWDPNGNRLQDFQY------LPFAVQ--CLCTFGSQIWVGYMNGI 480 (838)
Q Consensus 411 ~~g~~~~~~~~v~ala~S~dg~l-~Sgs~-DgtIrlWD~~g~~l~tl~~------H~~~V~--sls~dG~~LasGs~Dgt 480 (838)
..+.++.+.+||.+ ++.+. ++.|..+|.+|+.+.++.. +..... ++..+|++|++.+.++.
T Consensus 77 ---------~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~ 147 (276)
T 3no2_A 77 ---------CEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSE 147 (276)
T ss_dssp ---------CEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTE
T ss_pred ---------ccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCE
Confidence 01223445677774 45555 6677777888887777652 111222 23457999999999999
Q ss_pred EEEEeCCCcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecCCC
Q 003217 481 VQVLDLEGNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 481 IrlWD~~g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
|.+||.+|+.+-++..+.. +.++. .+|+.+++++.++.|..+|..+.
T Consensus 148 v~~~d~~G~~~w~~~~~~~-~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 148 VREIAPNGQLLNSVKLSGT-PFSSAFLDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp EEEECTTSCEEEEEECSSC-CCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred EEEECCCCCEEEEEECCCC-ccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence 9999999998777766533 33333 47888888888888888886543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.8e-06 Score=95.46 Aligned_cols=236 Identities=13% Similarity=0.094 Sum_probs=138.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCC--cEEEEE
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG--GIKIWP 268 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dg--tIrvWd 268 (838)
.....|+++++|+++++...++.|++||.+++ . +..+........ ++|+++|+ |+.+..++ .|.+|+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g--------~-~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d 200 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN--------K-VTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYM 200 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT--------E-EEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC--------E-EEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEE
Confidence 36788999999998888888899999999875 2 333322222233 99999998 67777655 677777
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
..+......+ .. +... .......++.++.+..|+.+. .+.|..||..++.. ..
T Consensus 201 ~~~~~~~~~~-------g~---------~~~~---------~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-~~ 254 (409)
T 3hrp_A 201 KASGWAPTRI-------GQ---------LGST---------FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-TL 254 (409)
T ss_dssp GGGTTCEEEE-------EE---------CCTT---------SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-EE
T ss_pred cCCCceeEEe-------ee---------ccch---------hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-EE
Confidence 6543211010 00 0000 011233456666455555543 35688899887653 22
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
+..... ... . . ......+++
T Consensus 255 ~~~~~~------------------------~g~----------------------------------~-~-~~P~~~ia~ 274 (409)
T 3hrp_A 255 IKQLEL------------------------SGS----------------------------------L-G-TNPGPYLIY 274 (409)
T ss_dssp EEECCC------------------------CSC----------------------------------C-C-CSSCCEEEE
T ss_pred Eecccc------------------------cCC----------------------------------C-C-CCccccEEE
Confidence 211000 000 0 0 000015678
Q ss_pred cC-CCcEEEE-ECCCeEEEEcCCCCeeeEeecCC---------------ccEEEEEE--cCCEEEEEe-eCCeEEEEeCC
Q 003217 428 SI-DGMIWTG-GANGLLLQWDPNGNRLQDFQYLP---------------FAVQCLCT--FGSQIWVGY-MNGIVQVLDLE 487 (838)
Q Consensus 428 S~-dg~l~Sg-s~DgtIrlWD~~g~~l~tl~~H~---------------~~V~sls~--dG~~LasGs-~DgtIrlWD~~ 487 (838)
+| ++.|+.+ ..++.|+.||.+|+ +.++.++. .....+++ +|...++-+ .++.|+.||+.
T Consensus 275 ~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 275 YFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL 353 (409)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred eCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence 88 5776544 45788999998876 44454443 34566766 577555555 68899999955
Q ss_pred -Cccccccccc---------------ccCEEEEEeC--CCEEEEEcCCCCeeeeec
Q 003217 488 -GNLLGGWVAH---------------SSPVIKMAVG--AGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 488 -g~~i~~l~gH---------------~~~V~sla~d--g~~l~S~S~DgtIrlWdl 525 (838)
|. +.++.++ -.....|+.+ |...++-..++.||.+++
T Consensus 354 ~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 354 DGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 54 4444444 2457778764 555667777888887764
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.6e-05 Score=94.39 Aligned_cols=318 Identities=15% Similarity=0.225 Sum_probs=182.1
Q ss_pred eeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 003217 134 FLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (838)
Q Consensus 134 ~~~~l~~~-~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~D 212 (838)
.+.+|..+ .+.||++++++|..+|..+...... . .+....+. ...|.++..+++++.||.|+..
T Consensus 147 ~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~------------~--~~~~~~~~-~~~i~~i~~d~~~~~lWigt~~ 211 (758)
T 3ott_A 147 TIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFEGI------------P--LPVHSSQS-NLFVNSLLEDTTRQCVWIGTEG 211 (758)
T ss_dssp CEEEEEECTTCCEEEEETTEEEEEETTTTEEEEE------------C--CCCCTTCS-SCCEEEEEEETTTTEEEEEEEE
T ss_pred eEEEEEEcCCCCEEEEeCCCHhhCccCCCceEEe------------c--CCCccccc-cceeEEEEEECCCCEEEEEECC
Confidence 46777777 5599999988999998754321100 0 00000011 3358999999888889999865
Q ss_pred CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEee
Q 003217 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (838)
Q Consensus 213 GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (838)
| +..++..++. +.....+ ....|.+|+..++|.||.|+. +.+.+++..+.... .+...
T Consensus 212 G-l~~~~~~~~~------~~~~~~l--~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~~~-~~~~~----------- 269 (758)
T 3ott_A 212 Y-LFQYFPSTGQ------IKQTEAF--HNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTPLQ-HIIHD----------- 269 (758)
T ss_dssp E-EEEEETTTTE------EEEEEEE--EEEEEEEEEECTTCCEEEEET-TEEEEECCTTSCCE-EECCC-----------
T ss_pred C-CeEEcCCCCe------EEeccCC--CCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCcEE-EEEcC-----------
Confidence 4 5678876641 1111112 235699999999999999985 46777876543211 00000
Q ss_pred ceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccce
Q 003217 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (838)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (838)
......++...|.++..+. .+.||.|++.++.+... +... +.+... .... ...
T Consensus 270 ----------~~~~~~l~~~~i~~i~~D~-~g~lWiGT~~Gl~~~~~-~~~~-~~~~~~-------~~~~----~~~--- 322 (758)
T 3ott_A 270 ----------SRNIQSLTNNIIWNIFADQ-EHNIWLGTDYGISLSRY-NSAL-QFIPIS-------QITG----TGD--- 322 (758)
T ss_dssp ----------TTCTTSCSCSCEEEEEECT-TCCEEEEESSSEEEECC-CC-C-EEEEHH-------HHSC----SCC---
T ss_pred ----------CCCcCcCCcCeEEEEEEcC-CCCEEEEeCCccccccc-CCce-eEEecc-------cCCC----CCC---
Confidence 0000112345678887765 45789888766655432 2111 111100 0000 000
Q ss_pred eeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc-C---cc---c-------cCCCceEEEEEcCCCcEEEEEC
Q 003217 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-G---GF---G-------DDNRRTEALTTSIDGMIWTGGA 438 (838)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~-g---~~---~-------~~~~~v~ala~S~dg~l~Sgs~ 438 (838)
...+.++ +.+....+|+|+..|+.++... + .+ . -....|.++..+.+|.||.|+.
T Consensus 323 ----------~~~v~~i-~~D~~g~lWiGt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~ 391 (758)
T 3ott_A 323 ----------GNQFYSL-FRDSKGFYWFGGANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIATD 391 (758)
T ss_dssp ----------CCBEEEE-EECTTCCEEEEETTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEET
T ss_pred ----------CceEEEE-EEcCCCCEEEeeCCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEeC
Confidence 0000000 1122345678877777776532 1 11 0 0123588899999999999995
Q ss_pred CCeEEEEcCCCCeeeEeec-------CCccEEEEEEcC-CEEEEEeeCCeEEEEeCCC------c-cc--ccc---c-cc
Q 003217 439 NGLLLQWDPNGNRLQDFQY-------LPFAVQCLCTFG-SQIWVGYMNGIVQVLDLEG------N-LL--GGW---V-AH 497 (838)
Q Consensus 439 DgtIrlWD~~g~~l~tl~~-------H~~~V~sls~dG-~~LasGs~DgtIrlWD~~g------~-~i--~~l---~-gH 497 (838)
+ -|.++|........+.. ....|.++..|. ..||.|+..+.|.++|... + .. ..+ . ..
T Consensus 392 ~-GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 470 (758)
T 3ott_A 392 G-SINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLS 470 (758)
T ss_dssp T-EEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCS
T ss_pred C-cHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccc
Confidence 4 58999985444444321 235689998875 4899999888899998542 1 11 111 1 12
Q ss_pred ccCEEEEEeCCCEEEEE--cCCCCeeeeecCC
Q 003217 498 SSPVIKMAVGAGYIFTL--ANHGGIRGWNVTS 527 (838)
Q Consensus 498 ~~~V~sla~dg~~l~S~--S~DgtIrlWdl~s 527 (838)
...|.+|..|.+..++. ++.+.|..+|..+
T Consensus 471 ~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~ 502 (758)
T 3ott_A 471 GMFINQIIPDNEGNVWVLLYNNKGIDKINPRT 502 (758)
T ss_dssp CSCEEEEEECTTSCEEEEETTCSSEEEEETTT
T ss_pred cceeeeEEEcCCCCEEEEccCCCCcEEEeCCC
Confidence 34699998876544444 7778888888643
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=1e-05 Score=87.60 Aligned_cols=213 Identities=15% Similarity=0.084 Sum_probs=124.3
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcc
Q 003217 195 MCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 195 ~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~ 273 (838)
.+.+++|+ +.++|++..++.|.+||..++ + ...+. +...|.+++++++|++|.++.+ .|.+||.++++
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~--------~-~~~~~-~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~ 120 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASG--------R-KTVHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGV 120 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTT--------E-EEEEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCC
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCC--------c-EEEEE-CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCc
Confidence 35678886 567888888999999999875 2 22332 3467999999999998766654 48999986643
Q ss_pred eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC------CcEEEEeccCccEEEE
Q 003217 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF------LSFALWDARTRELLKV 347 (838)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~------~tI~lWD~~tg~~l~~ 347 (838)
......... + .+...+..++.++++. +|.++. ....||.+.++++...
T Consensus 121 ~~~~~~~~~----------------------~---~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~~g~~~~~ 174 (326)
T 2ghs_A 121 LTLHAELES----------------------D---LPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKGKVTKL 174 (326)
T ss_dssp EEEEECSST----------------------T---CTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETTEEEEE
T ss_pred EEEEeeCCC----------------------C---CCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEeCCcEEEe
Confidence 211000000 0 0011244566666554 444331 0112222112221100
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
. ........+++
T Consensus 175 ~--------------------------------------------------------------------~~~~~~~~i~~ 186 (326)
T 2ghs_A 175 F--------------------------------------------------------------------ADISIPNSICF 186 (326)
T ss_dssp E--------------------------------------------------------------------EEESSEEEEEE
T ss_pred e--------------------------------------------------------------------CCCcccCCeEE
Confidence 0 00011235778
Q ss_pred cCCCc-EEEE-ECCCeEEEEcCC---C-Ce-----eeEeecCCccEEEEEEc--CCEEEEEe-eCCeEEEEeCCCccccc
Q 003217 428 SIDGM-IWTG-GANGLLLQWDPN---G-NR-----LQDFQYLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGG 493 (838)
Q Consensus 428 S~dg~-l~Sg-s~DgtIrlWD~~---g-~~-----l~tl~~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~~ 493 (838)
++||+ ++.+ +.++.|.+||.. | +. +..+..+......++.| | .||++. .++.|.+||.+++.+..
T Consensus 187 s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~g~~~~~ 265 (326)
T 2ghs_A 187 SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTDGNHIAR 265 (326)
T ss_dssp CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTTCCEEEE
T ss_pred cCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECCCCCEEEE
Confidence 89986 5444 456789999973 5 31 22232234456677765 5 466655 46899999998888788
Q ss_pred ccccccCEEEEEeC---CCEEEE
Q 003217 494 WVAHSSPVIKMAVG---AGYIFT 513 (838)
Q Consensus 494 l~gH~~~V~sla~d---g~~l~S 513 (838)
+..+...+.+++++ ++.|+.
T Consensus 266 i~~~~~~~~~~af~g~d~~~L~v 288 (326)
T 2ghs_A 266 YEVPGKQTTCPAFIGPDASRLLV 288 (326)
T ss_dssp EECSCSBEEEEEEESTTSCEEEE
T ss_pred EECCCCCcEEEEEecCCCCEEEE
Confidence 87777778888853 445543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.1e-06 Score=93.75 Aligned_cols=258 Identities=8% Similarity=-0.042 Sum_probs=136.8
Q ss_pred CCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCccCCCCCcceeEE-------eccccccEEEEEEecCCCEEEeeC--
Q 003217 192 SSVMCMVGDEASGVVWSGH--RDGRIMCWKMNARLLDSDDGFGEVLS-------WQAHRGPVLSLCISSYGDLWSGSE-- 260 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs--~DGtIrvWd~~~g~~~~~~~~~~~~~-------l~gH~~~V~slafs~dG~L~SgS~-- 260 (838)
..+..++++++|+++++.. .++.++||.+.++ + ... ..+|-..+.+|+++++|+||....
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g--------~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~ 87 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD--------G-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGN 87 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT--------E-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHH
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC--------C-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCC
Confidence 4678899999999998865 3454677777543 1 221 234667899999999999875442
Q ss_pred ----CCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEe-----CC
Q 003217 261 ----GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-----GF 331 (838)
Q Consensus 261 ----DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~-----s~ 331 (838)
+..|.+||+.+++....+..... .. .+......+++++.+..++.+ ..
T Consensus 88 ~~~~~~~i~~~d~~tg~~~~~~~~~~~----------------~~-------~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 88 QSKSVPKLVAWDTLNNQLSRVIYLPPP----------------IT-------LSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp HHTSCCEEEEEETTTTEEEEEEECCTT----------------TS-------CTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred CcCCCCeEEEEECCCCeEEEEEECChh----------------hc-------ccccccceEEEecCCCEEEEEcCccCCC
Confidence 57899999876542211110000 00 001122345555444454433 23
Q ss_pred CcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec
Q 003217 332 LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA 411 (838)
Q Consensus 332 ~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~ 411 (838)
.+|.+||+.+++..+++..+.... +.. . .+...+........++....+
T Consensus 145 ~~i~v~d~~~g~~~r~~~~~~~~~------~~~-~-----------------------~~~~~g~~~~~~~~~g~~~~~- 193 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQGYPGIA------PED-I-----------------------DLVIDGVPVQIGQPDGTVIRP- 193 (343)
T ss_dssp CEEEEEETTTCCEEEECTTCTTTS------CCS-C-----------------------CCEETTEECBEECTTSCEECC-
T ss_pred CeEEEEECCCCCEEEEecCCCccc------ccc-c-----------------------ceeECCEEEEeccCCCceece-
Confidence 589999999998876654321110 000 0 000000000111111111111
Q ss_pred cCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCC------CC-----eee--EeecCCccEEEEEE--cCCEEEEE
Q 003217 412 KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN------GN-----RLQ--DFQYLPFAVQCLCT--FGSQIWVG 475 (838)
Q Consensus 412 ~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~------g~-----~l~--tl~~H~~~V~sls~--dG~~LasG 475 (838)
...+..++++|||+ |+.+..++. ++|.+. +. ... ...++......++. +|...++.
T Consensus 194 -------~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~ 265 (343)
T 2qe8_A 194 -------HLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGD 265 (343)
T ss_dssp -------CCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEE
T ss_pred -------ecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEc
Confidence 12345789999996 777776653 455431 11 011 11123333334444 57666666
Q ss_pred eeCCeEEEEeC-CCcccccccc-cccCEEEEEe--CCCEEEEEcCCCCe
Q 003217 476 YMNGIVQVLDL-EGNLLGGWVA-HSSPVIKMAV--GAGYIFTLANHGGI 520 (838)
Q Consensus 476 s~DgtIrlWD~-~g~~i~~l~g-H~~~V~sla~--dg~~l~S~S~DgtI 520 (838)
..++.|.+||. +|+....... +-..+.++++ +++..++.+..+.+
T Consensus 266 ~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 266 LAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp GGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred cCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 67899999999 6764322222 2456788876 45555555544433
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.60 E-value=6.3e-06 Score=91.47 Aligned_cols=277 Identities=9% Similarity=-0.004 Sum_probs=155.8
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee----------C
Q 003217 197 MVGDEASGVVWSGHR-----DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------E 260 (838)
Q Consensus 197 la~s~dg~~LaSGs~-----DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS----------~ 260 (838)
....|+++.++.... +++|-+.|..++ +.+.++..-..+ . |++||||+ |+.++ .
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~--------~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~ 107 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG--------RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGER 107 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT--------EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCC--------eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCC
Confidence 455789999999876 689999999886 555555433445 4 99999998 66554 4
Q ss_pred CCcEEEEECCCcceeeecCCCc-eeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC---CCcEEE
Q 003217 261 GGGIKIWPWEAIEKALSLKPEE-RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFAL 336 (838)
Q Consensus 261 DgtIrvWd~~~~~~~~~~~~~~-~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s---~~tI~l 336 (838)
+++|.+||..+.+..-++.... .. .. . -..-..+++++++.++|.+. .++|.+
T Consensus 108 ~~~VsviD~~t~~v~~~I~v~~g~r--------------~~--~-------g~~P~~~a~spDGk~lyVan~~~~~~VsV 164 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPTADIELPDAPR--------------FL--V-------GTYPWMTSLTPDGKTLLFYQFSPAPAVGV 164 (386)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCC--------------CC--B-------SCCGGGEEECTTSSEEEEEECSSSCEEEE
T ss_pred CCEEEEEECCCCeEEEEEECCCccc--------------cc--c-------CCCCceEEEcCCCCEEEEEEcCCCCeEEE
Confidence 6889999998754322111000 00 00 0 00122356778888888764 368999
Q ss_pred EeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCC-cEEEEeccCcc
Q 003217 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAKGGF 415 (838)
Q Consensus 337 WD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~-~v~~v~~~g~~ 415 (838)
+|+.+++++.++...+... ..+.... + -+...+++..+++.... +.........+
T Consensus 165 ID~~t~~vv~tI~v~g~~~----~~P~g~~------~--------------~~~~~~DG~~~~v~~~~~g~v~~~~~~~~ 220 (386)
T 3sjl_D 165 VDLEGKAFKRMLDVPDCYH----IFPTAPD------T--------------FFMHCRDGSLAKVAFGTEGTPEITHTEVF 220 (386)
T ss_dssp EETTTTEEEEEEECCSEEE----EEEEETT------E--------------EEEEETTSCEEEEECCSSSCCEEEECCCC
T ss_pred EECCCCcEEEEEECCCcce----eecCCCc------e--------------eEEECCCCCEEEEECCCCCeEEEeeccee
Confidence 9999999998875433210 0000000 0 00111111122222111 10000000001
Q ss_pred ccCCCce-EEEEE-cCCCcEEEEECCCeEEEEcCCCC---eeeEee------------cCCccEEEEEEcCCEEEEEee-
Q 003217 416 GDDNRRT-EALTT-SIDGMIWTGGANGLLLQWDPNGN---RLQDFQ------------YLPFAVQCLCTFGSQIWVGYM- 477 (838)
Q Consensus 416 ~~~~~~v-~ala~-S~dg~l~Sgs~DgtIrlWD~~g~---~l~tl~------------~H~~~V~sls~dG~~LasGs~- 477 (838)
......+ ...++ .++|+++-.+.+|+|.+.|..+. .+..+. ........+..+++++++...
T Consensus 221 ~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~ 300 (386)
T 3sjl_D 221 HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ 300 (386)
T ss_dssp SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred ccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecc
Confidence 0011111 11233 47888666777899999999543 333332 112233455667888888653
Q ss_pred ---------CCeEEEEeCC-CcccccccccccCEEEEE--eCCC-EEEE-EcCCCCeeeeecCCCCCC
Q 003217 478 ---------NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAG-YIFT-LANHGGIRGWNVTSPGPL 531 (838)
Q Consensus 478 ---------DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~-~l~S-~S~DgtIrlWdl~s~~~~ 531 (838)
...|-+.|++ ++.++.+..- ..+++|+ +|++ +|++ ...+++|.++|..+...+
T Consensus 301 ~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 301 RDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp CCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred ccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 2579999987 6676666432 2456665 5776 6665 456899999998765443
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.60 E-value=5.2e-06 Score=91.25 Aligned_cols=257 Identities=16% Similarity=0.109 Sum_probs=146.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc---------cccEEEEEEecCCCEEEeeCCCcEEEEECCCcc
Q 003217 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH---------RGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 203 g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH---------~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~ 273 (838)
++.|+.++.++.|..+|..+| +.+-..... ...+.+.....++.++.++.|+.|..+|.++++
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG--------~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDG--------KEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTC--------CEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEEccCC--------ceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCC
Confidence 578999999999999999887 343332221 233444333456779999999999999998876
Q ss_pred eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCC
Q 003217 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDG 352 (838)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~ 352 (838)
.......... +. ... + . .+..|+.++ ++.+..+|++||+.+..+....
T Consensus 125 ~~W~~~~~~~----------------------~~---~~p---~-~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~ 173 (376)
T 3q7m_A 125 VAWQTKVAGE----------------------AL---SRP---V-V--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDM 173 (376)
T ss_dssp EEEEEECSSC----------------------CC---SCC---E-E--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred EEEEEeCCCc----------------------eE---cCC---E-E--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCC
Confidence 5443321100 00 001 1 1 134566655 5679999999999877665432
Q ss_pred ceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCc-EEEEec-cCccc------cC-----C
Q 003217 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAA-KGGFG------DD-----N 419 (838)
Q Consensus 353 ~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~-v~~v~~-~g~~~------~~-----~ 419 (838)
.... ........+. ...++++..++ +..+.. .|... .. .
T Consensus 174 ~~~~---~~~~~~~~~~-------------------------~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 225 (376)
T 3q7m_A 174 PSLS---LRGESAPTTA-------------------------FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEI 225 (376)
T ss_dssp --------CCCCCCEEE-------------------------TTEEEECCTTTEEEEEETTTCCEEEEEECCC-------
T ss_pred Ccee---ecCCCCcEEE-------------------------CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccc
Confidence 2100 0000000000 01112222221 222221 11100 00 0
Q ss_pred Cc---eEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-Ccccccc
Q 003217 420 RR---TEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (838)
Q Consensus 420 ~~---v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l 494 (838)
.. +.....-.++.++.++.++.|..+|. +|+.+-... .....++..++..|++++.++.|..+|.+ |+.+-..
T Consensus 226 ~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~--~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 226 DRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE--LGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQ 303 (376)
T ss_dssp ----CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC--CCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred ccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc--CCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence 00 00000112678899988999999999 788765543 23455677788999999999999999986 6654333
Q ss_pred c-ccccCEEEEEeCCCEEEEEcCCCCeeeeecCCC
Q 003217 495 V-AHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 495 ~-gH~~~V~sla~dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
. .....+.+....+..++.++.++.|.++|..+.
T Consensus 304 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 304 SDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp CTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTC
T ss_pred cccCCCcccCCEEECCEEEEEeCCCeEEEEECCCC
Confidence 2 122223333445678888899999999997664
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.58 E-value=2.6e-05 Score=83.01 Aligned_cols=216 Identities=11% Similarity=0.120 Sum_probs=125.2
Q ss_pred CCEEE-Ee-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003217 142 EEQLW-AG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (838)
Q Consensus 142 ~~~l~-~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd 219 (838)
++.|| +. .++.|..||.++..... + .. ...+.+++++++|++ |.+. ++.|.+||
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~~------------------~---~~-~~~~~~i~~~~dG~l-~v~~-~~~l~~~d 79 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQR------------------V---TM-DAPVSSVALRQSGGY-VATI-GTKFCALN 79 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEEE------------------E---EC-SSCEEEEEEBTTSSE-EEEE-TTEEEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEE------------------E---eC-CCceEEEEECCCCCE-EEEE-CCeEEEEE
Confidence 34444 43 36789999986532110 1 11 457899999999995 4555 56788999
Q ss_pred CCCCccCCCCCcceeEEec-c-ccccEEEEEEecCCCEEEeeC----------CCcEEEEECCCcceeeecCCCceeeeE
Q 003217 220 MNARLLDSDDGFGEVLSWQ-A-HRGPVLSLCISSYGDLWSGSE----------GGGIKIWPWEAIEKALSLKPEERHTAA 287 (838)
Q Consensus 220 ~~~g~~~~~~~~~~~~~l~-g-H~~~V~slafs~dG~L~SgS~----------DgtIrvWd~~~~~~~~~~~~~~~~~~~ 287 (838)
.+++. ++...... + ....++.++++|+|+||.++. ....+||.++.......+. .
T Consensus 80 ~~~g~------~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~------~- 146 (297)
T 3g4e_A 80 WKEQS------AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF------D- 146 (297)
T ss_dssp TTTTE------EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE------E-
T ss_pred CCCCc------EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe------e-
Confidence 98762 11111111 1 134589999999999875542 2345666654311110000 0
Q ss_pred EEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEec--cCccEEEEEecCCceEEeeecccC
Q 003217 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDA--RTRELLKVFNIDGQIENRVDMSLL 363 (838)
Q Consensus 288 ~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~--~tg~~l~~l~~~~~~~~~~~~s~~ 363 (838)
. -.....++.++++..++.+. .+.|.+||+ .+|.+... ..
T Consensus 147 ------------~----------~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~-----~~--------- 190 (297)
T 3g4e_A 147 ------------Q----------VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR-----RS--------- 190 (297)
T ss_dssp ------------E----------ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE-----EE---------
T ss_pred ------------c----------cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc-----EE---------
Confidence 0 01123456666666554332 356777776 45543100 00
Q ss_pred cccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEE-CCCeE
Q 003217 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANGLL 442 (838)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs-~DgtI 442 (838)
+.. +......+..++++++|.||.+. .++.|
T Consensus 191 -------------~~~-----------------------------------~~~~~~~p~g~~~d~~G~lwva~~~~~~v 222 (297)
T 3g4e_A 191 -------------VYK-----------------------------------LEKEEQIPDGMCIDAEGKLWVACYNGGRV 222 (297)
T ss_dssp -------------EEE-----------------------------------CCGGGCEEEEEEEBTTSCEEEEEETTTEE
T ss_pred -------------EEE-----------------------------------CCCCCCCCCeeEECCCCCEEEEEcCCCEE
Confidence 000 00001123457788999988776 45689
Q ss_pred EEEcC-CCCeeeEeecCCccEEEEEEc---CCEEEEEeeC
Q 003217 443 LQWDP-NGNRLQDFQYLPFAVQCLCTF---GSQIWVGYMN 478 (838)
Q Consensus 443 rlWD~-~g~~l~tl~~H~~~V~sls~d---G~~LasGs~D 478 (838)
.+||. +|+.+..+..+...++++++. ++.|++++..
T Consensus 223 ~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 223 IRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred EEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 99999 599999998887788988774 4678777653
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-06 Score=98.11 Aligned_cols=175 Identities=7% Similarity=0.051 Sum_probs=109.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc---CCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEE
Q 003217 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL---DSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (838)
Q Consensus 192 ~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~---~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (838)
.++..|++++..+++++|+.|+.+ +|++....- +....++... ...+.+ |+.|+| |+. |+.+ .+++|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~-v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAV-VGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEE-EEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEE-EEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 368899999999999999998654 698654210 0000122212 234667 999999 777 6677 88999999
Q ss_pred ECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEE
Q 003217 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKV 347 (838)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~ 347 (838)
|+.+....-.... + ...+..+...+. ..+...+++++.+||+.+++...
T Consensus 112 dv~sl~~~~~~~~-------------------~----------~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~- 160 (388)
T 1xip_A 112 DLEELSEFRTVTS-------------------F----------EKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQ- 160 (388)
T ss_dssp ESSSTTCEEEEEE-------------------C----------SSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEE-
T ss_pred EchhhhccCccce-------------------e----------ecceeeEEecCC-CEEEEECCCCEEEEEccCCcccc-
Confidence 9976432111100 0 001112222221 13333457899999998766421
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
+ ...|.++++
T Consensus 161 ~----------------------------------------------------------------------~~~Vs~v~W 170 (388)
T 1xip_A 161 L----------------------------------------------------------------------AQNVTSFDV 170 (388)
T ss_dssp E----------------------------------------------------------------------EESEEEEEE
T ss_pred c----------------------------------------------------------------------cCCceEEEE
Confidence 0 012457889
Q ss_pred cCCCcEEEEECCCeEEEEcCCCCe---eeEe------e---cCCccEEEEEEc--CCEEEE
Q 003217 428 SIDGMIWTGGANGLLLQWDPNGNR---LQDF------Q---YLPFAVQCLCTF--GSQIWV 474 (838)
Q Consensus 428 S~dg~l~Sgs~DgtIrlWD~~g~~---l~tl------~---~H~~~V~sls~d--G~~Las 474 (838)
||+| ++.|..||+|++|+..+.. .+++ . +|...|.+|.+. +.++++
T Consensus 171 SpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 171 TNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp CSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 9999 7889999999999995543 5566 2 478889999774 334443
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.9e-05 Score=92.49 Aligned_cols=233 Identities=13% Similarity=0.062 Sum_probs=141.4
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECC--Cccee
Q 003217 199 GDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE--AIEKA 275 (838)
Q Consensus 199 ~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~--~~~~~ 275 (838)
.|+.+.++++...+++|.++|..++ +.+.++.. ...+..++|||||+ |++++.|+.|.+||+. +.+..
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~--------~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v 233 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTY--------EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV 233 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTC--------CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCC--------eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe
Confidence 4456677888888999999999986 44545543 23567999999998 7888999999999985 33211
Q ss_pred eecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEc----CCCCEEEEeCC--CcEEEEeccCccEEEEEe
Q 003217 276 LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD----HSRAKVWSAGF--LSFALWDARTRELLKVFN 349 (838)
Q Consensus 276 ~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~----~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~ 349 (838)
.++. . ......++++ +++..++.+.. .++.++|..|.++++++.
T Consensus 234 ~~i~-----------------------~-------G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~ 283 (567)
T 1qks_A 234 AEIK-----------------------I-------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 283 (567)
T ss_dssp EEEE-----------------------C-------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred EEEe-----------------------c-------CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEe
Confidence 1110 0 1123456777 47888887763 689999999998887654
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcC
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~ 429 (838)
..+.. . + .. .+. ...++.++..++
T Consensus 284 ~~~~~-------~------~---------~~---------~~~-------------------------p~~rva~i~~s~ 307 (567)
T 1qks_A 284 TRGMT-------Y------D---------EQ---------EYH-------------------------PEPRVAAILASH 307 (567)
T ss_dssp CCEEC-------T------T---------TC---------CEE-------------------------SCCCEEEEEECS
T ss_pred ccccc-------c------c---------cc---------ccc-------------------------CCCceEEEEEcC
Confidence 21100 0 0 00 000 001233455566
Q ss_pred CCc--EEEEECCCeEEEEcCC-CCee--eEeecCCccEEEE--EEcCCEEEEEe-eCCeEEEEeCC-Cccccccc-----
Q 003217 430 DGM--IWTGGANGLLLQWDPN-GNRL--QDFQYLPFAVQCL--CTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWV----- 495 (838)
Q Consensus 430 dg~--l~Sgs~DgtIrlWD~~-g~~l--~tl~~H~~~V~sl--s~dG~~LasGs-~DgtIrlWD~~-g~~i~~l~----- 495 (838)
++. +++...+|.|.++|.. .+.+ .++ ........+ .++|++++++. .+++|.++|++ ++++....
T Consensus 308 ~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~ 386 (567)
T 1qks_A 308 YRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 386 (567)
T ss_dssp SSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred CCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC
Confidence 544 3344456888888883 3322 222 122233444 45789888776 57899999987 56544332
Q ss_pred cccc-CEEEEEeCCCEEE-EEc-CCCCeeeeecCC
Q 003217 496 AHSS-PVIKMAVGAGYIF-TLA-NHGGIRGWNVTS 527 (838)
Q Consensus 496 gH~~-~V~sla~dg~~l~-S~S-~DgtIrlWdl~s 527 (838)
.|.+ .+.-+.+++..++ +.. .+++|.+++...
T Consensus 387 Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 387 PHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 3543 2332345555554 332 568999999764
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.54 E-value=6.8e-05 Score=83.03 Aligned_cols=67 Identities=9% Similarity=0.018 Sum_probs=47.1
Q ss_pred EEEEcCCEEEEEee----------CCeEEEEeCC-CcccccccccccCEEEEE--eCCC-EEEEEc-CCCCeeeeecCCC
Q 003217 464 CLCTFGSQIWVGYM----------NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAG-YIFTLA-NHGGIRGWNVTSP 528 (838)
Q Consensus 464 sls~dG~~LasGs~----------DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~-~l~S~S-~DgtIrlWdl~s~ 528 (838)
.+.++|++|+++.. ++.|.+.|++ ++.++++..-. ..++++ +||+ .++++. .+++|.++|+.+.
T Consensus 273 ~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 45668888888653 3589999987 56666664322 355555 6888 677777 5899999998775
Q ss_pred CCC
Q 003217 529 GPL 531 (838)
Q Consensus 529 ~~~ 531 (838)
..+
T Consensus 352 ~vv 354 (373)
T 2mad_H 352 DQD 354 (373)
T ss_pred CEE
Confidence 443
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.4e-08 Score=108.58 Aligned_cols=190 Identities=14% Similarity=0.106 Sum_probs=101.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCC
Q 003217 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 202 dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~ 280 (838)
++++|++|+.||.|..||..+| +.+.++.. +++.+..+..+|. +++++.|+.|+.||.++++.......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG--------~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~ 77 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG--------SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPF 77 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC--------CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSC
T ss_pred eCCEEEEEcCCCEEEEEECCCC--------CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeec
Confidence 5789999999999999999998 55555554 5565666667776 67789999999999977654433321
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeee
Q 003217 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (838)
Q Consensus 281 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (838)
... ..+. ...+ .. .+.+|++++ ++.++.||++||+.+..+..+..
T Consensus 78 ~~~--------------------~~~~---~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~------ 123 (369)
T 2hz6_A 78 TIP--------------------ELVQ---ASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA------ 123 (369)
T ss_dssp CHH--------------------HHHT---TCSC----C------CCCCEEEEEEEEECCC-------------------
T ss_pred cCc--------------------cccc---cCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc------
Confidence 100 0000 0000 00 123444443 56799999999987544321100
Q ss_pred cccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEc-CCCcEEEEEC
Q 003217 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS-IDGMIWTGGA 438 (838)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S-~dg~l~Sgs~ 438 (838)
..++ .++.+++++.
T Consensus 124 -----------------------------------------------------------------~~~~p~~~~v~~~~~ 138 (369)
T 2hz6_A 124 -----------------------------------------------------------------DSLSPSTSLLYLGRT 138 (369)
T ss_dssp --------------------------------------------------------------------------EEEEEE
T ss_pred -----------------------------------------------------------------ccccccCCEEEEEec
Confidence 0001 2345788888
Q ss_pred CCeEEEEcC-CCCeeeEeecCCccEEEEEEcC-----CEEEEEeeCCeEEEEeCC-CcccccccccccCEEE
Q 003217 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFG-----SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (838)
Q Consensus 439 DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG-----~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s 503 (838)
|+.|+.||. +|+.+-.+..+. ..+.+.++ ..+++++.||.|+.||.+ |+.+-.+. ...+|..
T Consensus 139 dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~ 207 (369)
T 2hz6_A 139 EYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVA 207 (369)
T ss_dssp EEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEE
T ss_pred CCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEE
Confidence 999999999 788766554321 11222333 578888999999999986 77654443 2344544
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=3.7e-06 Score=100.96 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=57.0
Q ss_pred CeEEEEcC-CCCe--eeEeecCCccEEEEEEcCCEEEEEeeCC---eEEEEeCCCcccccccc-cccCEEEEE--eCCCE
Q 003217 440 GLLLQWDP-NGNR--LQDFQYLPFAVQCLCTFGSQIWVGYMNG---IVQVLDLEGNLLGGWVA-HSSPVIKMA--VGAGY 510 (838)
Q Consensus 440 gtIrlWD~-~g~~--l~tl~~H~~~V~sls~dG~~LasGs~Dg---tIrlWD~~g~~i~~l~g-H~~~V~sla--~dg~~ 510 (838)
+.|..||+ ++.+ .+++..|...+.+++++|++|+....++ .|++||++|+..+.+.. +.+.|..+. ++++.
T Consensus 305 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~ 384 (693)
T 3iuj_A 305 RRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPA 384 (693)
T ss_dssp CEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSC
T ss_pred CEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCE
Confidence 57888998 4443 4667777665558888999888777544 78999998765555443 334455554 35555
Q ss_pred EE-EEcC---CCCeeeeecCC
Q 003217 511 IF-TLAN---HGGIRGWNVTS 527 (838)
Q Consensus 511 l~-S~S~---DgtIrlWdl~s 527 (838)
++ +.+. -++|..||+.+
T Consensus 385 l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 385 LYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp EEEEEECSSSCCEEEEECTTT
T ss_pred EEEEecCCCCCCEEEEEECCC
Confidence 44 3322 26788888754
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.2e-06 Score=100.40 Aligned_cols=72 Identities=6% Similarity=-0.086 Sum_probs=51.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCc--------------EEEEECCCCccCCCCCcceeEEe--ccccccEEEEEEecCCC-EE
Q 003217 194 VMCMVGDEASGVVWSGHRDGR--------------IMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGD-LW 256 (838)
Q Consensus 194 V~~la~s~dg~~LaSGs~DGt--------------IrvWd~~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG~-L~ 256 (838)
+..++|+|| +.|+.++.|+. |.+|++.++. .+....+ ..|...+.++.|||||+ |+
T Consensus 211 ~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~------~~~~lv~~~~~~~~~~~~~~~SpDG~~l~ 283 (741)
T 1yr2_A 211 FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQ------SADQPVFATPELPKRGHGASVSSDGRWVV 283 (741)
T ss_dssp SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCG------GGCEEEECCTTCTTCEEEEEECTTSCEEE
T ss_pred eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCc------hhCEEEeccCCCCeEEEEEEECCCCCEEE
Confidence 356899999 99999888765 8899998752 0112333 34445689999999998 66
Q ss_pred EeeCC-----CcEEEEECCCc
Q 003217 257 SGSEG-----GGIKIWPWEAI 272 (838)
Q Consensus 257 SgS~D-----gtIrvWd~~~~ 272 (838)
..+.+ ..|.+||++++
T Consensus 284 ~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 284 ITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp EEEECTTCSCCEEEEEEEETT
T ss_pred EEEEccCCCcceEEEEECCCC
Confidence 55433 48999998654
|
| >4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=8.6e-07 Score=91.39 Aligned_cols=131 Identities=18% Similarity=0.215 Sum_probs=79.6
Q ss_pred eeEEEEEEeCCCCCCc-----ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhc
Q 003217 553 KILAGTWNVGQGRASQ-----DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKIL 627 (838)
Q Consensus 553 ~i~~~twNv~~~~~~~-----~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l 627 (838)
.|-+.|||+.+..... +.+.++|.. .+||| |+|||+.-. ..+.+.+.+
T Consensus 9 ~l~v~swNi~g~~~~~~~~r~~~i~~~i~~--~~pDI--i~LQEv~~~-----------------------~~~~l~~~~ 61 (256)
T 4gz1_A 9 TISFITWNIDGLDGCNLPERARGVCSCLAL--YSPDV--VFLQEVIPP-----------------------YCAYLKKRA 61 (256)
T ss_dssp EEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCSE--EEEEEECHH-----------------------HHHHHHHHC
T ss_pred cEEEEEEEcCCCcCcCHHHHHHHHHHHHHH--cCCCE--EEEEcCCHH-----------------------HHHHHHhhc
Confidence 4889999998654321 235566663 35675 689997421 122344433
Q ss_pred CCCCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcchHHH
Q 003217 628 DDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNR 707 (838)
Q Consensus 628 ~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~ 707 (838)
. .|...... -.+-...++.++..... +... .....+....++.+.+.+.+.+..+.++|+||.+.....+.
T Consensus 62 ~---~~~~~~~~-~~~~~~~~l~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~ 132 (256)
T 4gz1_A 62 A---SYTIITGN-EEGYFTAILLKKGRVKF---KSQE--IIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAE 132 (256)
T ss_dssp T---TEEEEESC-SSSSEEEEEEETTTEEE---EEEE--EEECTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGGHHH
T ss_pred c---ccceeecc-ccCCceEEEEEeccccc---eecc--cccCCcccccceEEEEEEEeCCEEEEEEeecccccccchhh
Confidence 1 23222211 12233345555543211 1111 11223344578889999999999999999999998888888
Q ss_pred HHHHHHHHHHhc
Q 003217 708 RNADFDHVYRTM 719 (838)
Q Consensus 708 Rn~d~~~I~~~l 719 (838)
|.+++..|++.+
T Consensus 133 ~~~q~~~~~~~l 144 (256)
T 4gz1_A 133 RIRQLKTVLGKM 144 (256)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHhhhh
Confidence 888898888875
|
| >4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.46 E-value=6.7e-07 Score=92.35 Aligned_cols=132 Identities=17% Similarity=0.156 Sum_probs=80.1
Q ss_pred eeeEEEEEEeCCCCCCc-----ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhh
Q 003217 552 LKILAGTWNVGQGRASQ-----DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKI 626 (838)
Q Consensus 552 ~~i~~~twNv~~~~~~~-----~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 626 (838)
..|-+.|||+.+..... +.+.++|.. .+||| |||||+.-.. .+.+.+.
T Consensus 12 ~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~--~~pDI--i~LQEv~~~~-----------------------~~~l~~~ 64 (256)
T 4fva_A 12 FEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN--VNPDI--LFLQEVVDRD-----------------------LAPIDKL 64 (256)
T ss_dssp CEEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCSE--EEEEEECSTT-----------------------CHHHHGG
T ss_pred CEEEEEEEecCCCCCcCHHHHHHHHHHHHHH--cCCCE--EEEEecChhH-----------------------hHHHHHh
Confidence 46899999997543321 235566664 45674 6899985311 1123332
Q ss_pred cCCCCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcchHH
Q 003217 627 LDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVN 706 (838)
Q Consensus 627 l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~ 706 (838)
+. .|.......-++-..+++.++.+. .+..... .+......++.+.+.+.+.+..+.++|+||.+....-.
T Consensus 65 ~~---~~~~~~~~~~~~~g~~il~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~ 135 (256)
T 4fva_A 65 QS---LYKIYYSNKGCQYYTAILVSKMFD----VEKHDVI--HFQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREHRP 135 (256)
T ss_dssp GG---TEEEEESSTTSSSEEEEEEETTCE----EEEEEEE--ECTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGGHH
T ss_pred cC---CceEeecCCCCCcceEEEEeeccc----ceecccc--cCCCCcccceeEEEEEEeCCeEEEEEEecCCCCCcchH
Confidence 21 233333333344455677776542 1222222 22233356788899999999999999999999887777
Q ss_pred HHHHHHHHHHHhc
Q 003217 707 RRNADFDHVYRTM 719 (838)
Q Consensus 707 ~Rn~d~~~I~~~l 719 (838)
+|.++++.+...+
T Consensus 136 ~~~~q~~~~~~~~ 148 (256)
T 4fva_A 136 QRCAQFGFCMDKV 148 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776643
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.45 E-value=5e-05 Score=85.19 Aligned_cols=107 Identities=9% Similarity=0.050 Sum_probs=70.7
Q ss_pred EEEec-CCEEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 003217 137 TIVCT-EEQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (838)
Q Consensus 137 ~l~~~-~~~l~~g~--d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DG 213 (838)
.|+.+ ...||++. ++.|++||.++..... + ........ ++++++++.|+.+..++
T Consensus 135 ~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~------------------~---~~~~~~~~-ia~~~~g~~l~~~d~~~ 192 (409)
T 3hrp_A 135 GIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT------------------V---HPGFKGGK-PAVTKDKQRVYSIGWEG 192 (409)
T ss_dssp EEEECSTTEEEEEETTTTEEEEEETTTTEEEE------------------E---EETCCBCB-CEECTTSSEEEEEBSST
T ss_pred EEEEeCCCCEEEEecCCCcEEEEECCCCEEEE------------------e---eccCCCCc-eeEecCCCcEEEEecCC
Confidence 45554 33677743 4799999987543211 0 01011222 89999999999998877
Q ss_pred --cEEEEECCCCccCCCCCcceeEEe---cc-ccccEEEEEEec-CCCEEEeeCCCcEEEEECCCcc
Q 003217 214 --RIMCWKMNARLLDSDDGFGEVLSW---QA-HRGPVLSLCISS-YGDLWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 214 --tIrvWd~~~g~~~~~~~~~~~~~l---~g-H~~~V~slafs~-dG~L~SgS~DgtIrvWd~~~~~ 273 (838)
.|.+|+..++ .....+ .. +...+.+++++| +|.|+.+..++.|+.||.++..
T Consensus 193 ~~~I~~~d~~~~--------~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~ 251 (409)
T 3hrp_A 193 THTVYVYMKASG--------WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE 251 (409)
T ss_dssp TCEEEEEEGGGT--------TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC
T ss_pred CceEEEEEcCCC--------ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC
Confidence 7888887664 112222 12 456678999999 6778777778899999987643
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.43 E-value=7.4e-05 Score=82.87 Aligned_cols=103 Identities=7% Similarity=-0.042 Sum_probs=69.7
Q ss_pred cCCEEEEec------CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe----
Q 003217 141 TEEQLWAGG------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH---- 210 (838)
Q Consensus 141 ~~~~l~~g~------d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs---- 210 (838)
+++.+|... ++.|.+.|.++....+. + . . |..| . ++++|||+.|+.++
T Consensus 43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~-----------------I-~-v-G~~P-~-va~spDG~~lyVan~~~~ 100 (386)
T 3sjl_D 43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-----------------I-D-G-GFLP-N-PVVADDGSFIAHASTVFS 100 (386)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-----------------E-E-E-CSSC-E-EEECTTSSCEEEEEEEEE
T ss_pred CCCEEEEEcCcccCCCCEEEEEECCCCeEEEE-----------------E-E-C-CCCC-c-EEECCCCCEEEEEccccc
Confidence 566777632 56899999877554321 1 1 1 2445 4 99999999998876
Q ss_pred ------CCCcEEEEECCCCccCCCCCcceeEEec-cc------cccEEEEEEecCCC-EEEee--CCCcEEEEECCCcc
Q 003217 211 ------RDGRIMCWKMNARLLDSDDGFGEVLSWQ-AH------RGPVLSLCISSYGD-LWSGS--EGGGIKIWPWEAIE 273 (838)
Q Consensus 211 ------~DGtIrvWd~~~g~~~~~~~~~~~~~l~-gH------~~~V~slafs~dG~-L~SgS--~DgtIrvWd~~~~~ 273 (838)
.+++|.+||..+. +...++. +. ...-..++|+|||+ |+.+. .+++|.|+|+.+.+
T Consensus 101 r~~~G~~~~~VsviD~~t~--------~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~ 171 (386)
T 3sjl_D 101 RIARGERTDYVEVFDPVTL--------LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA 171 (386)
T ss_dssp ETTEEEEEEEEEEECTTTC--------CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred ccccCCCCCEEEEEECCCC--------eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc
Confidence 3678999999986 4444432 10 01234689999998 66554 37899999998754
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=7.6e-05 Score=80.62 Aligned_cols=213 Identities=13% Similarity=0.119 Sum_probs=122.7
Q ss_pred EEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003217 144 QLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA 222 (838)
Q Consensus 144 ~l~~g-~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~ 222 (838)
.+|+. .++.|.+||.++..... + .. ...|.+++++++|+++++ +.+| |.+||..+
T Consensus 63 l~~~d~~~~~i~~~d~~~~~~~~------------------~---~~-~~~v~~i~~~~dg~l~v~-~~~g-l~~~d~~~ 118 (326)
T 2ghs_A 63 AWWFNILERELHELHLASGRKTV------------------H---AL-PFMGSALAKISDSKQLIA-SDDG-LFLRDTAT 118 (326)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEE------------------E---EC-SSCEEEEEEEETTEEEEE-ETTE-EEEEETTT
T ss_pred EEEEECCCCEEEEEECCCCcEEE------------------E---EC-CCcceEEEEeCCCeEEEE-ECCC-EEEEECCC
Confidence 44554 36789999986532110 1 01 346899999999876654 4554 88999887
Q ss_pred CccCCCCCcceeEEec-cc-cccEEEEEEecCCCEEEeeCC-----CcEEEEECCCcceeeecCCCceeeeEEEEeecee
Q 003217 223 RLLDSDDGFGEVLSWQ-AH-RGPVLSLCISSYGDLWSGSEG-----GGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (838)
Q Consensus 223 g~~~~~~~~~~~~~l~-gH-~~~V~slafs~dG~L~SgS~D-----gtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 295 (838)
+. +....... ++ ...+++++++|+|++|.++.+ +..+||.+++++ ...+. .
T Consensus 119 g~------~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~-~~~~~------~--------- 176 (326)
T 2ghs_A 119 GV------LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLF------A--------- 176 (326)
T ss_dssp CC------EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEE------E---------
T ss_pred Cc------EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc-EEEee------C---------
Confidence 62 11111111 11 246899999999998755432 345566553211 00000 0
Q ss_pred ecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEecc--Cc-cEEEEEecCCceEEeeecccCccccccc
Q 003217 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDAR--TR-ELLKVFNIDGQIENRVDMSLLPDFAMED 370 (838)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~--tg-~~l~~l~~~~~~~~~~~~s~~~~~~~~~ 370 (838)
. ......++.++++..+|.+. .+.|.+||+. +| ++. ....
T Consensus 177 ----~----------~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~-----~~~~---------------- 221 (326)
T 2ghs_A 177 ----D----------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG-----KAEV---------------- 221 (326)
T ss_dssp ----E----------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS-----CCEE----------------
T ss_pred ----C----------CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc-----CceE----------------
Confidence 0 01223456666676655443 3567788764 44 210 0000
Q ss_pred ceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEE-CCCeEEEEcCCC
Q 003217 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANGLLLQWDPNG 449 (838)
Q Consensus 371 ~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs-~DgtIrlWD~~g 449 (838)
+.. +......+..++++++|.+|.+. .++.|.+||.+|
T Consensus 222 ------~~~-----------------------------------~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g 260 (326)
T 2ghs_A 222 ------FID-----------------------------------STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG 260 (326)
T ss_dssp ------EEE-----------------------------------CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred ------EEE-----------------------------------CCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC
Confidence 000 00001123457788899988776 457899999999
Q ss_pred CeeeEeecCCccEEEEEE---cCCEEEEEeeC
Q 003217 450 NRLQDFQYLPFAVQCLCT---FGSQIWVGYMN 478 (838)
Q Consensus 450 ~~l~tl~~H~~~V~sls~---dG~~LasGs~D 478 (838)
+.+..+..+...+.++++ +++.|++++..
T Consensus 261 ~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 261 NHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp CEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 888888887778888876 45678776654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.4e-05 Score=82.31 Aligned_cols=57 Identities=11% Similarity=0.222 Sum_probs=43.9
Q ss_pred EEEcCCCcEEEEECCCeEEEEcCCCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEE
Q 003217 425 LTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQV 483 (838)
Q Consensus 425 la~S~dg~l~Sgs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrl 483 (838)
++++++|.||+++.++ |.+||.+|+.+..+..+. .+.++++ +++.||+++.++..++
T Consensus 244 i~~d~~G~lwv~~~~g-v~~~~~~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 244 FCVDRGGWLWSSSGTG-VCVFDSDGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp EEECTTSCEEECCSSE-EEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred EEECCCCCEEEecCCc-EEEECCCCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 5678899999888665 999999999988887655 4666665 6789999887654443
|
| >4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-06 Score=96.04 Aligned_cols=133 Identities=18% Similarity=0.158 Sum_probs=84.9
Q ss_pred ceeeEEEEEEeCCCCCC-----cccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhh
Q 003217 551 NLKILAGTWNVGQGRAS-----QDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGK 625 (838)
Q Consensus 551 ~~~i~~~twNv~~~~~~-----~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 625 (838)
...|-+.||||++.... ...+.+||.. .+||| |||||+.... .+.+.+
T Consensus 117 ~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~--~~PDI--V~LQEv~~~~-----------------------~~~l~~ 169 (362)
T 4gew_A 117 GFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN--VNPDI--LFLQEVVDRD-----------------------LAPIDK 169 (362)
T ss_dssp TCEEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCSE--EEEEEECSTT-----------------------CHHHHG
T ss_pred CCeEEEEEEEeCCCCCcCHHHHHHHHHHHHHH--cCCCE--EEEEcCChhH-----------------------hHHHHH
Confidence 34588999999865332 1346677774 45674 6899984211 112333
Q ss_pred hcCCCCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcchH
Q 003217 626 ILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV 705 (838)
Q Consensus 626 ~l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~ 705 (838)
.+ ..|.......-++-..+||.|+.+. .+...... +.+.....+++.+++.+.+..|.++|+||.+.....
T Consensus 170 ~~---~~y~~~~~~~~~~~G~aIlsk~~i~----~~~~~~~~--~~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~~~ 240 (362)
T 4gew_A 170 LQ---SLYKIYYSNKGCQYYTAILVSKMFD----VEKHDVIH--FQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREHR 240 (362)
T ss_dssp GG---GTEEEEESSTTSSSEEEEEEETTEE----EEEEEEEE--CTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGGH
T ss_pred hc---CCceEEeCCCCCCceEEEEEeccCc----cccccccC--CCCCcccceEEEEEEEECCEEEEEEEecCCccccch
Confidence 33 2455555555556667788886432 22222221 112223567888999999999999999999888888
Q ss_pred HHHHHHHHHHHHhc
Q 003217 706 NRRNADFDHVYRTM 719 (838)
Q Consensus 706 ~~Rn~d~~~I~~~l 719 (838)
.+|.+++..+...+
T Consensus 241 ~~R~~Q~~~l~~~~ 254 (362)
T 4gew_A 241 PQRCAQFGFCMDKV 254 (362)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 88988888887654
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.32 E-value=8.9e-05 Score=83.45 Aligned_cols=93 Identities=8% Similarity=-0.113 Sum_probs=64.2
Q ss_pred CCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEEC
Q 003217 151 NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH----------RDGRIMCWKM 220 (838)
Q Consensus 151 ~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs----------~DGtIrvWd~ 220 (838)
+.|.+.|.++...... + . + |..| .++++|||+.|+.+. .++.|.++|.
T Consensus 99 ~~VsVID~~t~~vv~~-----------------I-~-v-G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 99 TQQFVIDGSTGRILGM-----------------T-D-G-GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp EEEEEEETTTTEEEEE-----------------E-E-E-CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CeEEEEECCCCEEEEE-----------------E-E-C-CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 6899999987654331 1 1 1 2445 799999999999887 3678999999
Q ss_pred CCCccCCCCCcceeEEec-c-c-----cccEEEEEEecCCC-EEEeeC--CCcEEEEECCCcc
Q 003217 221 NARLLDSDDGFGEVLSWQ-A-H-----RGPVLSLCISSYGD-LWSGSE--GGGIKIWPWEAIE 273 (838)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~-g-H-----~~~V~slafs~dG~-L~SgS~--DgtIrvWd~~~~~ 273 (838)
.+. +...++. + - ...-..++|+|||+ |+.+.. +++|-+.|+.+.+
T Consensus 157 ~t~--------~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k 211 (426)
T 3c75_H 157 VTF--------LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT 211 (426)
T ss_dssp TTC--------CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred CCC--------cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe
Confidence 886 3443332 1 0 11224689999998 666553 6889999997754
|
| >4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B* | Back alignment and structure |
|---|
Probab=98.32 E-value=4.4e-06 Score=84.90 Aligned_cols=45 Identities=9% Similarity=0.155 Sum_probs=38.8
Q ss_pred CCCceeEEEEEEcCeEEEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 675 GNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 675 gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
.....+.+.+.+.+..+.++|+||.+.....+.|.++++.|++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~~~~r~~q~~~~~~~l 138 (250)
T 4f1h_A 94 MMRNLLIAQVTFSGQKLYLMTSHLESCKNQSQERTKQLRVVLQKI 138 (250)
T ss_dssp SCCEEEEEEEEETTEEEEEEECBCCCSGGGHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEecCCcEEEEeccccccccccHHHHHHHHHHHHHHH
Confidence 346678888899999999999999998888888888999988875
|
| >1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.8e-06 Score=90.22 Aligned_cols=129 Identities=15% Similarity=0.174 Sum_probs=78.2
Q ss_pred eEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCCCCCE
Q 003217 554 ILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTF 633 (838)
Q Consensus 554 i~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~y 633 (838)
|-+.|||+.+.+...+.+.++|.. .++| ||||||+...... ...+.+. .+ + |
T Consensus 1 lrv~t~Nv~~~~~~~~~i~~~i~~--~~~D--ii~LQE~~~~~~~-------------------~~~~~l~-~~--g--y 52 (268)
T 1ako_A 1 MKFVSFNINGLRARPHQLEAIVEK--HQPD--VIGLQETKVHDDM-------------------FPLEEVA-KL--G--Y 52 (268)
T ss_dssp CEEEEEECSCGGGCHHHHHHHHHH--HCCS--EEEEECCCCCGGG-------------------CCHHHHH-HT--T--C
T ss_pred CEEEEEehhHHHHHHHHHHHHHHH--cCCC--EEEEEeccCChhh-------------------CCHhHhc-cC--C--C
Confidence 357899998765555567777764 4567 4689998643210 0011221 11 2 3
Q ss_pred EEEeeeecccEEEEEEEecCCcCccCceeeceeecccCc--ccCCCceeEEEEEEcCeEEEEEeccccCCcc-----hHH
Q 003217 634 ERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGR--AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE-----AVN 706 (838)
Q Consensus 634 ~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~--~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~-----~~~ 706 (838)
..+....-+.-.+++|.|..+. .+. .++.. ...+++.+.+++.+.+..|+++|+||.+... ...
T Consensus 53 ~~~~~~~~~~~G~ailsr~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~ 123 (268)
T 1ako_A 53 NVFYHGQKGHYGVALLTKETPI----AVR-----RGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFP 123 (268)
T ss_dssp EEEEEEETTEEEEEEEESSCCS----EEE-----ESSTTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHH
T ss_pred cEEEeCCCCcceEEEEEecCcc----eee-----eCCCCcccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHH
Confidence 3333334444566778887643 222 22321 1245788999999988999999999987753 345
Q ss_pred HHHHHHHHHHHhc
Q 003217 707 RRNADFDHVYRTM 719 (838)
Q Consensus 707 ~Rn~d~~~I~~~l 719 (838)
.|.+.++.|.+.+
T Consensus 124 ~r~~~~~~l~~~~ 136 (268)
T 1ako_A 124 AKAQFYQNLQNYL 136 (268)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777777776654
|
| >3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} | Back alignment and structure |
|---|
Probab=98.27 E-value=4e-06 Score=87.34 Aligned_cols=148 Identities=14% Similarity=0.075 Sum_probs=80.3
Q ss_pred eEEEEEEeCCCCCC-----cccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcC
Q 003217 554 ILAGTWNVGQGRAS-----QDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILD 628 (838)
Q Consensus 554 i~~~twNv~~~~~~-----~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~ 628 (838)
|-+.|||+.+.... .+.+..+|.. .++|| |+|||+...... +.+ .+.-..+.|...+.+.|.
T Consensus 4 l~v~t~Ni~~~~~~~~~~~~~~i~~~i~~--~~~DI--i~LQEv~~~~~~-------~~~--~~~~~~d~~~~~~~~~l~ 70 (266)
T 3teb_A 4 MKILTVNVHAWLEENQMEKIDILARTIAE--KQYDV--IAMQEVNQLMNN-------KII--FDDIREENYAWVLLETLQ 70 (266)
T ss_dssp EEEEEEECCTTCSTTHHHHHHHHHHHHHH--HTCSE--EEEEEEEEETTS-------CEE--ETTEETTCHHHHHHHHHT
T ss_pred eEEEEEecccccCcchhHHHHHHHHHHHh--cCCCE--EEEEEccccccc-------ccc--ccccccccHHHHHHHHHH
Confidence 77899999755332 1234445542 35675 679999632100 000 000011123333333332
Q ss_pred CC--CCEEEEee-----eecccEEEEEEEecCCcCccCceeeceee-cc-cCcccCCCceeEEEEEEcCeEEEEEecccc
Q 003217 629 DG--STFERVGS-----RQLAGLLIAVWVRKNLKDYVGDVDVAAVP-CG-FGRAIGNKGAVGLRVRVYDRIMCFVNCHFA 699 (838)
Q Consensus 629 ~~--~~y~~v~s-----~~l~g~~l~vf~r~~~~~~i~~v~~~~v~-~G-~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLa 699 (838)
.. ..|..+.. ..-.+-.+++|.|..+. +.+.-..+ +. .. .+..++.+.+++.+.+..+.++|+||.
T Consensus 71 ~~~~~~y~~~~~~~~~~~~~~~~g~ailsr~~~~----~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~~v~~~Hl~ 145 (266)
T 3teb_A 71 KYTDTDYYLHWSNSHIGFGKYNEGVAVITRHKIK----AEDEFYCTFAQSVR-TISARRIVSITINYEGQDIEFYSCHMN 145 (266)
T ss_dssp TTCCSCCEEEEEEEEECSTTEEEEEEEEESSCCS----EEEEEECSSCCCTT-CTTCCEEEEEEEEETTEEEEEEEEECC
T ss_pred HhCCCCeEEEEeccccCccccCCeEEEEECceec----CceeEEeCCCCCCC-CcccceEEEEEEEeCCeEEEEEEecCC
Confidence 21 24554311 12233355666665442 22211111 11 11 145699999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHhc
Q 003217 700 AHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 700 a~~~~~~~Rn~d~~~I~~~l 719 (838)
+.....+.|.++++.|++.+
T Consensus 146 ~~~~~~~~r~~q~~~l~~~~ 165 (266)
T 3teb_A 146 LPNCETEDMGKNIQTILNRT 165 (266)
T ss_dssp CTTCTTCCHHHHHHHHHTSS
T ss_pred CccCChHHHHHHHHHHHHHH
Confidence 88655667888888887754
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.9e-05 Score=87.79 Aligned_cols=99 Identities=11% Similarity=0.067 Sum_probs=79.1
Q ss_pred eEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-Ccccccccccc
Q 003217 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~ 498 (838)
|..|+| |+. |+++ .++.|++||+ +-........|...|.++.+....+++++.||+|.+||++ ++... +.
T Consensus 90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~ 162 (388)
T 1xip_A 90 VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LA 162 (388)
T ss_dssp EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EE
T ss_pred eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----cc
Confidence 778889 555 6666 7899999999 4444455667788888887766569999999999999997 44432 56
Q ss_pred cCEEEEEeCCCEEEEEcCCCCeeeeecCC
Q 003217 499 SPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 499 ~~V~sla~dg~~l~S~S~DgtIrlWdl~s 527 (838)
..|.++++.++.++.|..||+|++|+...
T Consensus 163 ~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~ 191 (388)
T 1xip_A 163 QNVTSFDVTNSQLAVLLKDRSFQSFAWRN 191 (388)
T ss_dssp ESEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred CCceEEEEcCCceEEEEcCCcEEEEcCCC
Confidence 78999999888899999999999998654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.4e-07 Score=102.66 Aligned_cols=95 Identities=15% Similarity=0.130 Sum_probs=52.0
Q ss_pred CCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEeC
Q 003217 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVG 507 (838)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~d 507 (838)
++.+++|+.|++|..||. +|+.+.++..+.. ...++++..|++|+.|+.|+.||.+ |+++-.+..+. ....+.+
T Consensus 92 ~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~--~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~ 167 (369)
T 2hz6_A 92 DGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA--DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPE 167 (369)
T ss_dssp ---CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCC
T ss_pred CCEEEEEeCCCEEEEEECCCCcEEEEecCCCc--ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCcccc
Confidence 456777888899999999 7988877765542 2334578899999999999999986 77654443222 1122233
Q ss_pred C-----CEEEEEcCCCCeeeeecCCC
Q 003217 508 A-----GYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 508 g-----~~l~S~S~DgtIrlWdl~s~ 528 (838)
+ ..++.++.|+.|+.||..+.
T Consensus 168 ~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 168 DDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp CCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred CCccccceEEEECCCCEEEEEECCCC
Confidence 3 56778899999999997653
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0008 Score=74.36 Aligned_cols=108 Identities=6% Similarity=-0.075 Sum_probs=66.8
Q ss_pred EEecCCEEEEec-----------CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEE
Q 003217 138 IVCTEEQLWAGG-----------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV 206 (838)
Q Consensus 138 l~~~~~~l~~g~-----------d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~L 206 (838)
+..+++.||.+. ++.|.+||.++...... + .+++ . .. + .. ...-..++++|||++|
T Consensus 73 ~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~-i--~~~~----~-~~-~---~~-g~~p~~~~~spDG~~l 139 (373)
T 2mad_H 73 AAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD-I--ELPD----A-PR-F---DV-GPYSWMNANTPNNADL 139 (373)
T ss_pred ECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEE-E--ECCC----c-cc-c---cc-CCCccceEECCCCCEE
Confidence 344577888753 57899999976544321 0 0000 0 00 0 00 1123468999999999
Q ss_pred EEEeC--CCcEEEEECCCCccCCCCCcceeEE-eccccccEEEEEEecCCC--EEEeeCCCcEEEEECCCc
Q 003217 207 WSGHR--DGRIMCWKMNARLLDSDDGFGEVLS-WQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAI 272 (838)
Q Consensus 207 aSGs~--DGtIrvWd~~~g~~~~~~~~~~~~~-l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~ 272 (838)
+.++. ++.|-++| +++ +.... +.- .+ ++.+.|++. +++.+.||.+.+|+. ++
T Consensus 140 ~v~n~~~~~~v~viD-~t~--------~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g 196 (373)
T 2mad_H 140 LFFQFAAGPAVGLVV-QGG--------SSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AG 196 (373)
T ss_pred EEEecCCCCeEEEEE-CCC--------CEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CC
Confidence 99885 47899999 886 34444 321 11 255667764 567888999999998 54
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00019 Score=86.12 Aligned_cols=54 Identities=9% Similarity=0.025 Sum_probs=39.3
Q ss_pred CCeEEEEeCC-CcccccccccccCEE-EEEeCCCEEEEEcCCCCeeeeecCCCCCC
Q 003217 478 NGIVQVLDLE-GNLLGGWVAHSSPVI-KMAVGAGYIFTLANHGGIRGWNVTSPGPL 531 (838)
Q Consensus 478 DgtIrlWD~~-g~~i~~l~gH~~~V~-sla~dg~~l~S~S~DgtIrlWdl~s~~~~ 531 (838)
+|+|+.||+. |+.+-....|..... .+...+..++.++.|+.++.||.++...+
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 4889999987 776555444433222 34567889999999999999998876554
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00039 Score=74.56 Aligned_cols=70 Identities=10% Similarity=0.109 Sum_probs=51.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec--------------------cccccEEEEEEec-
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--------------------AHRGPVLSLCISS- 251 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~--------------------gH~~~V~slafs~- 251 (838)
...+++++++|+++|++..++.|..|+..++ ....+. +..+.+.+|++++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~ 90 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNS---------GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ 90 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTT---------CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCC---------ceEEEecccccccccccccccchhccccCCCCceEEEcCC
Confidence 3456889999988999999999999988764 122221 1123578999997
Q ss_pred CCCEEEeeCCCcEEEEECCC
Q 003217 252 YGDLWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 252 dG~L~SgS~DgtIrvWd~~~ 271 (838)
+|+||.+...+.|.++|..+
T Consensus 91 ~g~l~v~d~~~~i~~~d~~~ 110 (322)
T 2fp8_A 91 NNQLYIVDCYYHLSVVGSEG 110 (322)
T ss_dssp TTEEEEEETTTEEEEECTTC
T ss_pred CCcEEEEECCCCEEEEeCCC
Confidence 78898887666688888754
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00014 Score=86.94 Aligned_cols=117 Identities=14% Similarity=0.075 Sum_probs=66.6
Q ss_pred cCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCC--ceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003217 141 TEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAP--FKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMC 217 (838)
Q Consensus 141 ~~~~l~~g~-d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrv 217 (838)
.++.+|+++ ++.|.-+|.+++...... .. .......+ +..... . .+++ +++.|+.++.|+.+..
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~---~~---~~~~~~~~~~~~~~~~-~----~~a~--~~~~v~v~~~dg~l~a 142 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTY---DP---QIDRSTGFKGCCDVVN-R----GVAL--WKGKVYVGAWDGRLIA 142 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEE---CC---CCCGGGGGGSSSCSCC-C----CCEE--ETTEEEEECTTSEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEE---cC---CCCccccccccccCCC-C----CceE--ECCEEEEEcCCCEEEE
Confidence 466777754 678888998776554420 00 00000000 000000 1 1233 3578999999999999
Q ss_pred EECCCCccCCCCCcceeEEeccc-c----ccEEEEEEecCCCEEEeeC------CCcEEEEECCCcceeeec
Q 003217 218 WKMNARLLDSDDGFGEVLSWQAH-R----GPVLSLCISSYGDLWSGSE------GGGIKIWPWEAIEKALSL 278 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~~~~l~gH-~----~~V~slafs~dG~L~SgS~------DgtIrvWd~~~~~~~~~~ 278 (838)
+|..+| +.+-++..+ . ..+++--...++.++.++. ++.|+.+|..+++...+.
T Consensus 143 lD~~tG--------~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 143 LDAATG--------KEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp EETTTC--------CEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred EECCCC--------CEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 999998 555554433 1 1222211122566665553 799999999988766554
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00033 Score=84.01 Aligned_cols=81 Identities=26% Similarity=0.437 Sum_probs=55.6
Q ss_pred CCeEEEEcC-CCCeeeEeecCCccEE-EEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCE---EEEEeCCC-EE
Q 003217 439 NGLLLQWDP-NGNRLQDFQYLPFAVQ-CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV---IKMAVGAG-YI 511 (838)
Q Consensus 439 DgtIrlWD~-~g~~l~tl~~H~~~V~-sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V---~sla~dg~-~l 511 (838)
+|+|+.||+ +|+.+-.+..+..... .+...|..+++|+.||.|+.||.+ |+++-.+..+.+.+ .....+|+ |+
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 478999999 7887766665443222 456688899999999999999987 88877766553322 22246776 56
Q ss_pred EEEcCCCC
Q 003217 512 FTLANHGG 519 (838)
Q Consensus 512 ~S~S~Dgt 519 (838)
+..+..|.
T Consensus 534 ~~~~G~gg 541 (689)
T 1yiq_A 534 TFMAGWGG 541 (689)
T ss_dssp EEEECCCT
T ss_pred EEEecCCc
Confidence 65555444
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00017 Score=79.59 Aligned_cols=90 Identities=7% Similarity=-0.221 Sum_probs=63.3
Q ss_pred CEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECC
Q 003217 152 GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH----------RDGRIMCWKMN 221 (838)
Q Consensus 152 ~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs----------~DGtIrvWd~~ 221 (838)
+|.|.|.++...... + . + |..| .++++|||+.||.+. .+++|.+||+.
T Consensus 47 ~vsvID~~t~~v~~~-----------------i-~-v-G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~ 104 (368)
T 1mda_H 47 ENWVSCAGCGVTLGH-----------------S-L-G-AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV 104 (368)
T ss_dssp EEEEEETTTTEEEEE-----------------E-E-E-CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred eEEEEECCCCeEEEE-----------------E-e-C-CCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 788999887654321 1 1 1 2446 699999999999997 37899999999
Q ss_pred CCccCCCCCcceeEEecccc-------ccEEEEEEecCCC-EEEeeC--CCcEEE--EECCC
Q 003217 222 ARLLDSDDGFGEVLSWQAHR-------GPVLSLCISSYGD-LWSGSE--GGGIKI--WPWEA 271 (838)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH~-------~~V~slafs~dG~-L~SgS~--DgtIrv--Wd~~~ 271 (838)
++ +...++.-+. ..-..++|||||+ |+.+.. +..|.+ +|+.+
T Consensus 105 T~--------~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 105 TF--------LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp TC--------CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred CC--------CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 97 4555553220 1234789999997 776653 467888 98855
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00013 Score=87.43 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=69.7
Q ss_pred eEEEEEcCCCc-E-EEEEC---CCeEEEEcCC-CC-eeeEeecCCccEEE-EEEcCCEEEEEee-C---CeEEEEeCCC-
Q 003217 422 TEALTTSIDGM-I-WTGGA---NGLLLQWDPN-GN-RLQDFQYLPFAVQC-LCTFGSQIWVGYM-N---GIVQVLDLEG- 488 (838)
Q Consensus 422 v~ala~S~dg~-l-~Sgs~---DgtIrlWD~~-g~-~l~tl~~H~~~V~s-ls~dG~~LasGs~-D---gtIrlWD~~g- 488 (838)
...+.+||||+ | ++.+. ++.|.+||++ ++ .++.+..+...+.. +..+|++|+.-+. + +.|.+||+++
T Consensus 236 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~ 315 (693)
T 3iuj_A 236 YVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANP 315 (693)
T ss_dssp EEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred EEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 34567889997 4 33332 2479999984 43 56777777666554 5678886665553 3 6899999874
Q ss_pred cc--cccccccccCEEEEEeCCCEEEEEcCCC---CeeeeecC
Q 003217 489 NL--LGGWVAHSSPVIKMAVGAGYIFTLANHG---GIRGWNVT 526 (838)
Q Consensus 489 ~~--i~~l~gH~~~V~sla~dg~~l~S~S~Dg---tIrlWdl~ 526 (838)
.. .+.+..|...+.++.+++++|+....++ .|++|++.
T Consensus 316 ~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 316 GPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp CGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred CccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECC
Confidence 33 4567777766557778888877655444 57788764
|
| >3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.3e-05 Score=82.03 Aligned_cols=134 Identities=20% Similarity=0.296 Sum_probs=74.3
Q ss_pred eeEEEEEEeCCCCCCc---------ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHH
Q 003217 553 KILAGTWNVGQGRASQ---------DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623 (838)
Q Consensus 553 ~i~~~twNv~~~~~~~---------~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 623 (838)
.|-+.|||+....+.. +.+.++|.. .++|| |||||+... ..+.|
T Consensus 3 ~l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~~--~~~DI--v~LQEv~~~-----------------------~~~~l 55 (267)
T 3g6s_A 3 DVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKD--HELDI--VGMQEVLHN-----------------------QFQDL 55 (267)
T ss_dssp EEEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHH--TTCSE--EEEESBCHH-----------------------HHHHH
T ss_pred cEEEEEEEeccCCCCccccCHHHHHHHHHHHHHH--cCCCE--EEEecCCHH-----------------------HHHHH
Confidence 3778999997665421 123334432 35664 589998631 12234
Q ss_pred hhhcCCCCCEEEEeeee----cccEEEEEEEecCCcCccCcee--eceee-----cccCcccCCCceeEEEEEE--cCeE
Q 003217 624 GKILDDGSTFERVGSRQ----LAGLLIAVWVRKNLKDYVGDVD--VAAVP-----CGFGRAIGNKGAVGLRVRV--YDRI 690 (838)
Q Consensus 624 ~~~l~~~~~y~~v~s~~----l~g~~l~vf~r~~~~~~i~~v~--~~~v~-----~G~~~~~gnKG~v~i~~~i--~~~~ 690 (838)
.+.| ..|..+.... -.|-.+.||.|++-.+.+..-. ....+ .|+. ...+++++.+.|.. .+..
T Consensus 56 ~~~l---~~y~~~~~~~~~~~~~g~~~ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~R~~~~~~~~~~~~~~~ 131 (267)
T 3g6s_A 56 RAGL---PEYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWD-AVCVRIATWAKFKDKATGKI 131 (267)
T ss_dssp HHHC---TTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTT-CSSCCEEEEEEEEETTTCCE
T ss_pred HHhc---cCCcEEEecCCCCCcCCceeEEEEEccceEEEecccEecCCCCCcccccccc-ccCcceEEEEEEEEcCCCCE
Confidence 4444 2354444222 2344467777765432221111 11000 1111 23467888888885 5789
Q ss_pred EEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 691 MCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 691 ~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
|+++|+||.... ...|.++.+.|.+.+
T Consensus 132 ~~v~~~Hl~~~~--~~~R~~q~~~l~~~l 158 (267)
T 3g6s_A 132 FMAVNTHFDHVG--EEARRQSALLIIRKI 158 (267)
T ss_dssp EEEEEEECCSSC--HHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCC--HHHHHHHHHHHHHHH
Confidence 999999998753 456777777776654
|
| >3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.91 E-value=3e-05 Score=80.56 Aligned_cols=132 Identities=14% Similarity=0.080 Sum_probs=75.8
Q ss_pred eEEEEEEeCCCCCCcc---------cccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHh
Q 003217 554 ILAGTWNVGQGRASQD---------ALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIG 624 (838)
Q Consensus 554 i~~~twNv~~~~~~~~---------~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 624 (838)
|-+.|||+....+... .+.++|.. .++|| |||||+... ..+.+.
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~--~~~DI--v~LQEv~~~-----------------------~~~~l~ 53 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINF--HDWSL--CCIQEVRPN-----------------------QVRDLK 53 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHHH--HCCSE--EEEEEECHH-----------------------HHHHHH
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHHH--cCCCE--EEEeCCCHH-----------------------HHHHHH
Confidence 3578999986654321 23344442 34565 579998631 112333
Q ss_pred hhcCCCCCEEEEeeee---cccEEEEEEEecCCcCccCceee--ce----eecccCcccCCCceeEEEEEEc--CeEEEE
Q 003217 625 KILDDGSTFERVGSRQ---LAGLLIAVWVRKNLKDYVGDVDV--AA----VPCGFGRAIGNKGAVGLRVRVY--DRIMCF 693 (838)
Q Consensus 625 ~~l~~~~~y~~v~s~~---l~g~~l~vf~r~~~~~~i~~v~~--~~----v~~G~~~~~gnKG~v~i~~~i~--~~~~~F 693 (838)
+.+ .|..+.... -.+-.+++|.|++-.+.+..-.. .. ...+. +....++++.+++... +..+.+
T Consensus 54 ~~l----~y~~~~~~~~~~~~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~g~~~~v 128 (257)
T 3l1w_A 54 AYT----TFTCLSAEREGDGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHP-EAGCPRIALWGLFKETTQNTPFLV 128 (257)
T ss_dssp HHS----SSEEEEEESSSSSCSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCT-TCSSCCEEEEEEEEETTCSSCEEE
T ss_pred hcC----CCcEEEecccCCCCCceEEEEEEcceEEEEecCeEECcCCCCcccccc-cccccceeEEEEEEEcCCCCEEEE
Confidence 334 243333322 35567788888763322211111 10 01111 2234788888999884 689999
Q ss_pred EeccccCCcchHHHHHHHHHHHHHhc
Q 003217 694 VNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 694 v~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
+|+||.+.. -..|.++++.|.+.+
T Consensus 129 ~~~Hl~~~~--~~~r~~q~~~l~~~i 152 (257)
T 3l1w_A 129 INVHLDHIS--AHARLAGMTVILEEL 152 (257)
T ss_dssp EEEECCSSC--HHHHHHHHHHHHHHT
T ss_pred EEeCCCCCC--HHHHHHHHHHHHHHH
Confidence 999998763 356888888887765
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.011 Score=61.08 Aligned_cols=74 Identities=9% Similarity=0.032 Sum_probs=49.1
Q ss_pred eEEEEEcCCC-cEEE-EECCCeEEEEcCCCCeeeEeecCCccEEEEEEcCCEEEEEee-CCeEEEEeCC-Cccccccc
Q 003217 422 TEALTTSIDG-MIWT-GGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYM-NGIVQVLDLE-GNLLGGWV 495 (838)
Q Consensus 422 v~ala~S~dg-~l~S-gs~DgtIrlWD~~g~~l~tl~~H~~~V~sls~dG~~LasGs~-DgtIrlWD~~-g~~i~~l~ 495 (838)
...+++++++ .|+. -...+.|.++|..|..+..+......-..+++++.+|+.+.. .+.|..+|.+ |+.+..+.
T Consensus 169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 4467788864 5644 445678999999764433332222334577788888887764 5899999987 67666654
|
| >3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.84 E-value=3.5e-05 Score=82.40 Aligned_cols=134 Identities=17% Similarity=0.176 Sum_probs=75.8
Q ss_pred eeEEEEEEeCCCCCCc-----------ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHH
Q 003217 553 KILAGTWNVGQGRASQ-----------DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLD 621 (838)
Q Consensus 553 ~i~~~twNv~~~~~~~-----------~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 621 (838)
.+-+.|||+....+.. +.+..+|.. .++| ||||||+... ..+
T Consensus 6 ~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~--~~~D--Iv~LQEv~~~-----------------------~~~ 58 (298)
T 3mpr_A 6 SLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQY--HDFD--IFGTQECFLH-----------------------QLK 58 (298)
T ss_dssp EEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHH--TTCS--EEEEESBCHH-----------------------HHH
T ss_pred cEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHH--cCCC--EEEEeCCCHH-----------------------HHH
Confidence 4889999996554321 123334442 3567 5689998621 123
Q ss_pred HHhhhcCCCCCEEEEeeeec----ccEEEEEEEecCCcCccCcee--ec----eeecccCcccCCCceeEEEEEE--cCe
Q 003217 622 MIGKILDDGSTFERVGSRQL----AGLLIAVWVRKNLKDYVGDVD--VA----AVPCGFGRAIGNKGAVGLRVRV--YDR 689 (838)
Q Consensus 622 ~~~~~l~~~~~y~~v~s~~l----~g~~l~vf~r~~~~~~i~~v~--~~----~v~~G~~~~~gnKG~v~i~~~i--~~~ 689 (838)
.|.+.| ..|..++.... .|-.++||.|++-.+.+..-. .. ....|.. ..-+++++.+.|.. .+.
T Consensus 59 ~l~~~l---~~y~~~~~~~~~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~-~~~~R~~~~~~~~~~~~g~ 134 (298)
T 3mpr_A 59 DMKEAL---PGYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWD-AVLPRICSWGHFKCKDTGF 134 (298)
T ss_dssp HHHHHS---TTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTT-CSSCCEEEEEEEEETTTCC
T ss_pred HHHHhC---CCCcEEEEecCCCCCCCceeEEEEecCceEEEeccEEEccCCCCccCcccc-cccCceeEEEEEEEcCCCC
Confidence 444455 24555543332 344466776665432221111 00 0012222 12467888888884 678
Q ss_pred EEEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 690 IMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 690 ~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
.|+++|+||.... ...|.++.+.|.+.+
T Consensus 135 ~~~v~~~Hl~~~~--~~~R~~q~~~l~~~i 162 (298)
T 3mpr_A 135 EFLFFNLHMDHIG--KKARVESAFLVQEKM 162 (298)
T ss_dssp EEEEEEEECCSSC--HHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCC--HHHHHHHHHHHHHHH
Confidence 9999999998532 466777888887765
|
| >1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 | Back alignment and structure |
|---|
Probab=97.84 E-value=4.2e-05 Score=81.46 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=38.3
Q ss_pred cCCCceeEEEEEEcCeEEEEEeccccCCc------chHHHHHHHHHHHHHhc
Q 003217 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDHVYRTM 719 (838)
Q Consensus 674 ~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~------~~~~~Rn~d~~~I~~~l 719 (838)
..+||++.+++.+.+..+.++|+||.+.. .....|.++++.|.+.+
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 179 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFI 179 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999873 35667888888887754
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0026 Score=75.91 Aligned_cols=72 Identities=21% Similarity=0.259 Sum_probs=48.9
Q ss_pred CeEEEEcC-CCCeeeEeecCCccEE--EEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCE---EEEEeCCCEEE
Q 003217 440 GLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV---IKMAVGAGYIF 512 (838)
Q Consensus 440 gtIrlWD~-~g~~l~tl~~H~~~V~--sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V---~sla~dg~~l~ 512 (838)
++|..||+ +|+.+-++... .++. .+..+|..++.|+.||.|++||++ |+++.++....+.+ .....+|+..+
T Consensus 457 g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence 78999999 78876665432 2222 356688899999999999999987 88877776443211 11236776443
|
| >2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=97.76 E-value=5e-05 Score=78.46 Aligned_cols=125 Identities=16% Similarity=0.095 Sum_probs=64.8
Q ss_pred EEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCCCCCEE
Q 003217 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFE 634 (838)
Q Consensus 555 ~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~y~ 634 (838)
-+.|||+.+.....+.+.++|.. .++|| |+|||+...... ...+.+. . ..|.
T Consensus 2 rv~t~Nv~~~~~~~~~i~~~i~~--~~~DI--v~LQE~~~~~~~-------------------~~~~~~~-~----~gy~ 53 (256)
T 2jc4_A 2 KITTWNVNSLNVRLPQVQNLLAD--NPPDI--LVLQELKLDQDK-------------------FPAAALQ-M----MGWH 53 (256)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHS--SCCSE--EEEECCCSCGGG-------------------SCHHHHH-T----TTCE
T ss_pred EEEEEEcCCcHHHHHHHHHHHHh--cCCCE--EEEEeeccchhc-------------------CCHhHHh-h----cCCe
Confidence 47899998654333556667764 45675 579998753210 0011121 1 2343
Q ss_pred EEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcc----hHHHHHH
Q 003217 635 RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE----AVNRRNA 710 (838)
Q Consensus 635 ~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~----~~~~Rn~ 710 (838)
.+....-+.-.++||.|..+. .++. ++.+......+..+.+.+. .+.++|+|+.+... ....|.+
T Consensus 54 ~~~~~~~~~~G~ailsr~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~--~~~v~~~h~~~~~~~~~~~~~~r~~ 122 (256)
T 2jc4_A 54 CVWSGQKTYNGVAIVSRSVPQ----DVHF-----GLPALPDDPQRRVIAATVS--GVRVINVYCVNGEALDSPKFKYKEQ 122 (256)
T ss_dssp EEEECCSSSCCEEEEESSCCE----EEEE-----SCTTSTTCCSCCEEEEEET--TEEEEEEECCCCCSTTSHHHHHHHH
T ss_pred EEECCCCcceEEEEEECCChH----Hhee-----cCCCCccCCcCcEEEEEeC--CEEEEEEEecCCCCCCcHhHHHHHH
Confidence 333222233346778887542 2221 2221111222223444553 79999999987643 4455666
Q ss_pred HHHHHHHh
Q 003217 711 DFDHVYRT 718 (838)
Q Consensus 711 d~~~I~~~ 718 (838)
.++.|.+.
T Consensus 123 ~~~~l~~~ 130 (256)
T 2jc4_A 123 WFAALTEF 130 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0013 Score=72.67 Aligned_cols=102 Identities=11% Similarity=0.013 Sum_probs=64.0
Q ss_pred EcCCCcEEEEECCCeEEEEcCCCC---eeeEee------------cCCccEEEEEEcCCEEEEEee-C--------CeEE
Q 003217 427 TSIDGMIWTGGANGLLLQWDPNGN---RLQDFQ------------YLPFAVQCLCTFGSQIWVGYM-N--------GIVQ 482 (838)
Q Consensus 427 ~S~dg~l~Sgs~DgtIrlWD~~g~---~l~tl~------------~H~~~V~sls~dG~~LasGs~-D--------gtIr 482 (838)
...++.++..+. ++|.+.|..+. .+.++. .+......+.+||++++++.. . +.+.
T Consensus 219 ~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ 297 (368)
T 1mda_H 219 ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297 (368)
T ss_dssp ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE
Confidence 444555665556 78888888432 222221 111122357789999887654 2 3566
Q ss_pred EEeCC-CcccccccccccCEEEEE--eCCCE-EEEEc-CCCCeeeeecCCCCC
Q 003217 483 VLDLE-GNLLGGWVAHSSPVIKMA--VGAGY-IFTLA-NHGGIRGWNVTSPGP 530 (838)
Q Consensus 483 lWD~~-g~~i~~l~gH~~~V~sla--~dg~~-l~S~S-~DgtIrlWdl~s~~~ 530 (838)
++|++ .+.++.+.... ..++|+ +||++ +++.. .+++|.++|+.+...
T Consensus 298 ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 298 SVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp EEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred EEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 99987 56777776543 355665 57874 55666 599999999876543
|
| >2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00023 Score=75.75 Aligned_cols=46 Identities=20% Similarity=0.349 Sum_probs=37.7
Q ss_pred cCCCceeEEEEEEcCeEEEEEeccccCCc------chHHHHHHHHHHHHHhc
Q 003217 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDHVYRTM 719 (838)
Q Consensus 674 ~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~------~~~~~Rn~d~~~I~~~l 719 (838)
..+||++.+++.+.+..+.++|+||.+.. .....|.++++.|.+.+
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 179 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFI 179 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHH
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHH
Confidence 35799999999999999999999998873 35677888888887654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0023 Score=69.37 Aligned_cols=84 Identities=17% Similarity=0.236 Sum_probs=48.8
Q ss_pred ccEEEEEEecCCCEE-Eee--CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEE
Q 003217 242 GPVLSLCISSYGDLW-SGS--EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL 318 (838)
Q Consensus 242 ~~V~slafs~dG~L~-SgS--~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~la 318 (838)
..+..|+++++|+++ +.. .++.++||.+.++ +...+.... . .. + -.-..+..++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g-~~~~~p~~~-----------------~---~~-~-~~~~~p~gv~ 73 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD-GLIPFPPQS-----------------G---NA-I-ITFDTVLGIK 73 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT-EEEESCCCC-----------------S---SC-C-CCCSCEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC-CeecCCCcc-----------------c---Cc-c-cceeEeeEEE
Confidence 688999999999964 543 2344778877422 111111000 0 00 0 0123466778
Q ss_pred EcCCCCEEEEeC-------CCcEEEEeccCccEEEEEe
Q 003217 319 SDHSRAKVWSAG-------FLSFALWDARTRELLKVFN 349 (838)
Q Consensus 319 s~~~~~~V~s~s-------~~tI~lWD~~tg~~l~~l~ 349 (838)
+++++ +||.+. ...|.+||+.++++++++.
T Consensus 74 ~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~ 110 (343)
T 2qe8_A 74 SDGNG-IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIY 110 (343)
T ss_dssp ECSSS-EEEEEECHHHHTSCCEEEEEETTTTEEEEEEE
T ss_pred EcCCC-cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEE
Confidence 87765 455543 3578999999998776664
|
| >1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00026 Score=72.05 Aligned_cols=113 Identities=13% Similarity=0.088 Sum_probs=61.7
Q ss_pred eeEEEEEEeCCCCCCc--ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCCC
Q 003217 553 KILAGTWNVGQGRASQ--DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDG 630 (838)
Q Consensus 553 ~i~~~twNv~~~~~~~--~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~ 630 (838)
.+-+.|||+++..... +.+.++|.. .++|| |+|||+......+ . .+ .+ .+
T Consensus 7 ~lri~t~Nv~g~~~~~~~~~~~~~i~~--~~~DI--v~LQE~~~~~~~~-----------------~----~l--~~-~~ 58 (238)
T 1vyb_A 7 HITILTLNINGLNSAIKRHRLASWIKS--QDPSV--CCIQETHLTCRDT-----------------H----RL--KI-KG 58 (238)
T ss_dssp CEEEEEEECSCCCSHHHHHHHHHHHHH--HCCSE--EEEECCCCCTTSG-----------------G----GC--CC-TT
T ss_pred cceEEEEecccCCchhhHHHHHHHHHH--cCCCE--EEEecccCCCCCc-----------------h----hH--hh-CC
Confidence 3788999998665432 456677764 35665 5799986431100 0 00 01 12
Q ss_pred CCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcc
Q 003217 631 STFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (838)
Q Consensus 631 ~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~ 703 (838)
..|.......-.+-.+++|.|.++...+..+. .. ...-.+.+++.+.+..+.++|+|+.....
T Consensus 59 y~~~~~~~~~~~~~Gvail~r~~~~~~~~~~~-----~~-----~~~r~i~~~~~~~~~~~~v~~~y~p~~~~ 121 (238)
T 1vyb_A 59 WRKIYQANGKQKKAGVAILVSDKTDFKPTKIK-----RD-----KEGHYIMVKGSIQQEELTILNIYAPNTGA 121 (238)
T ss_dssp CCEEEEECCSSSSCCEEEEECTTCCCEEEEEE-----EC-----TTSSEEEEEEEETTEEEEEEEEECCSSSH
T ss_pred CCeEEEccCCCCCceEEEEEeCCCCcccccee-----Ec-----CCCcEEEEEEEeCCCcEEEEEEecCCCCc
Confidence 23322221111122567888887532222211 11 11225677888888999999999987653
|
| >3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00018 Score=77.62 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=40.1
Q ss_pred ccCCCceeEEEEEEcCeEEEEEeccccCCc------chHHHHHHHHHHHHHhc
Q 003217 673 AIGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDHVYRTM 719 (838)
Q Consensus 673 ~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~------~~~~~Rn~d~~~I~~~l 719 (838)
...+||.+.+++.+.+..+.++|+||.+.. .....|.++.+.|.+.+
T Consensus 146 ~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 198 (317)
T 3i41_A 146 NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFV 198 (317)
T ss_dssp GGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHH
T ss_pred cccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHH
Confidence 357999999999999999999999998864 34788899998887765
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.053 Score=55.89 Aligned_cols=105 Identities=9% Similarity=-0.047 Sum_probs=63.6
Q ss_pred EEEEEcC-CCcEEEEEC---CCeEEEEcCCCCeeeEee-cCCccEEEEEE--cCCEEEEEee-CCeEEEEeCCCcccccc
Q 003217 423 EALTTSI-DGMIWTGGA---NGLLLQWDPNGNRLQDFQ-YLPFAVQCLCT--FGSQIWVGYM-NGIVQVLDLEGNLLGGW 494 (838)
Q Consensus 423 ~ala~S~-dg~l~Sgs~---DgtIrlWD~~g~~l~tl~-~H~~~V~sls~--dG~~LasGs~-DgtIrlWD~~g~~i~~l 494 (838)
..+++++ ++.|+.+.. .+.|..++.+|+..+.+. .....-..++. ++++|+.+.. .+.|.++|..+.....+
T Consensus 125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 204 (267)
T 1npe_A 125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV 204 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE
Confidence 4577777 466655543 357888888776554443 22234456655 5677777664 68999999986432222
Q ss_pred cccccCEEEEEeCCCEEEEEc-CCCCeeeeecCC
Q 003217 495 VAHSSPVIKMAVGAGYIFTLA-NHGGIRGWNVTS 527 (838)
Q Consensus 495 ~gH~~~V~sla~dg~~l~S~S-~DgtIrlWdl~s 527 (838)
.........|+.+++.++.+. ..+.|.+.+..+
T Consensus 205 ~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~ 238 (267)
T 1npe_A 205 LEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAI 238 (267)
T ss_dssp EECCCSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred ecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCC
Confidence 111233456777777776655 456787777543
|
| >2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00058 Score=70.50 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=25.6
Q ss_pred eEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccC
Q 003217 554 ILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEM 594 (838)
Q Consensus 554 i~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~ 594 (838)
+-+.|||+++.....+.+.++|.. .+||| |+|||+..
T Consensus 2 lrv~t~Nv~g~~~~~~~i~~~i~~--~~~Di--i~lQE~~~ 38 (257)
T 2voa_A 2 LKIATFNVNSIRSRLHIVIPWLKE--NKPDI--LCMQETKV 38 (257)
T ss_dssp EEEEEEECSCGGGTHHHHHHHHHH--HCCSE--EEEECCCC
T ss_pred eEEEEEecCChHHHHHHHHHHHhh--cCCCE--EEEEEeec
Confidence 568899998765444556667663 35665 57999865
|
| >1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00027 Score=72.85 Aligned_cols=120 Identities=14% Similarity=0.079 Sum_probs=68.7
Q ss_pred eeEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCCCCC
Q 003217 553 KILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGST 632 (838)
Q Consensus 553 ~i~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~ 632 (838)
.|-+.|||+++.+...+.+..||.. .++|| |+|||....... .+.. ...
T Consensus 19 ~lri~s~Nv~~~~~~~~~l~~~i~~--~~~DI--v~lQE~~~~~~~-----------------------~~~~----~~g 67 (245)
T 1wdu_A 19 PYRVLQANLQRKKLATAELAIEAAT--RKAAI--ALIQEPYVGGAK-----------------------SMKG----FRG 67 (245)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHH--HTCSE--EEEESCCC-----------------------------CC----CSS
T ss_pred ceeeeeeeccccHHHHHHHHHHHhh--cCCCE--EEEEcccccCCc-----------------------cccC----CCc
Confidence 3789999999765545567778874 45564 689998642110 0000 112
Q ss_pred EEEEeee----ecccEEEEEEEec-CCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcchHHH
Q 003217 633 FERVGSR----QLAGLLIAVWVRK-NLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNR 707 (838)
Q Consensus 633 y~~v~s~----~l~g~~l~vf~r~-~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~ 707 (838)
|...... .-.|+ +||.++ .+. + . . +. ..-.+|.+.+.+...+..+.|+|+|+..... .++
T Consensus 68 y~~~~~~~~~~~~~Gv--aIl~~~~~~~--~---~--~----~~-~~~~~~~~~~~i~~~~~~~~v~~vy~p~~~~-~~~ 132 (245)
T 1wdu_A 68 VRVFQSTAQGDGTVKA--AIAVFDHDLD--V---I--Q----YP-QLTTNNIVVVGIRTRAWEITLVSYYFEPDKP-IES 132 (245)
T ss_dssp CEEEECCCCTTCCCCE--EEEECCSSCE--E---E--E----CT-TTCCSSEEEEEEECSSCEEEEEEEECCTTSC-SHH
T ss_pred ceEeccccccCCCCCe--EEEEECCCcc--e---E--E----ec-ccccCCEEEEEEEcCCCcEEEEEEEeCCCCC-HHH
Confidence 3332211 11343 566654 332 1 0 1 11 1236788899998888899999999997653 344
Q ss_pred HHHHHHHHHHh
Q 003217 708 RNADFDHVYRT 718 (838)
Q Consensus 708 Rn~d~~~I~~~ 718 (838)
+.+.+..+++.
T Consensus 133 ~~~~l~~~~~~ 143 (245)
T 1wdu_A 133 YLEQIKRVERK 143 (245)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 55566665553
|
| >2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0002 Score=74.74 Aligned_cols=70 Identities=17% Similarity=0.067 Sum_probs=39.4
Q ss_pred CCCEEEEeeeecc----cEEEEEEEecCCcCccCceeeceeecc-c--CcccCCCceeEEEEEEc---CeEEEEEecccc
Q 003217 630 GSTFERVGSRQLA----GLLIAVWVRKNLKDYVGDVDVAAVPCG-F--GRAIGNKGAVGLRVRVY---DRIMCFVNCHFA 699 (838)
Q Consensus 630 ~~~y~~v~s~~l~----g~~l~vf~r~~~~~~i~~v~~~~v~~G-~--~~~~gnKG~v~i~~~i~---~~~~~Fv~~HLa 699 (838)
+..|..+.+...+ +....++.|++....+ +.....-+ . +...-......+.|... +..|.++|+||.
T Consensus 60 ~~~y~~v~~~~~~~~~~~~~~~~ly~~~~v~~~---~~~~~~~~~~~~~~~~~~R~p~~~~~~~~~~~g~~~~vi~~Hl~ 136 (260)
T 2a40_B 60 PNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVL---DTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSA 136 (260)
T ss_dssp TTSCEEEECCCBCSSSCCBEEEEEECTTTCEEE---EEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCC
T ss_pred CCCcEEEEcccCCCCCCcEEEEEEEcCceeEec---CceeccCCCcCCCCCceeeCCEEEEEEeCCCCCceEEEEEecCC
Confidence 3457777665543 4666777777643221 11111111 0 01111356677788765 579999999999
Q ss_pred CCc
Q 003217 700 AHL 702 (838)
Q Consensus 700 a~~ 702 (838)
+..
T Consensus 137 ~~~ 139 (260)
T 2a40_B 137 PSD 139 (260)
T ss_dssp GGG
T ss_pred CCC
Confidence 643
|
| >2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00031 Score=72.47 Aligned_cols=125 Identities=15% Similarity=0.164 Sum_probs=62.5
Q ss_pred eEEEEEEeCCCCCCcc-cccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCCCCC
Q 003217 554 ILAGTWNVGQGRASQD-ALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGST 632 (838)
Q Consensus 554 i~~~twNv~~~~~~~~-~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~ 632 (838)
+-+.|||+.+...... .+.++|.. .++|| |+|||+......+ .+.+.+.. .
T Consensus 2 l~v~t~Ni~~~~~~~~~~i~~~i~~--~~~DI--i~LQE~~~~~~~~--------------------~~~l~~~~----g 53 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKKGFYEYIAA--SGADI--VCVQELKAQEADL--------------------SADMKNPH----G 53 (259)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHHH--TTCSE--EEEECCCCCGGGC--------------------CHHHHSGG----G
T ss_pred cEEEEEeeccHHHHHHhHHHHHHHh--cCCCE--EEEEEecchhhcc--------------------Chhhcccc----C
Confidence 5688999986533222 36666664 45675 6799997532100 01121111 2
Q ss_pred EEEEee--eecccEEEEEEEecCCcCccCceeeceeecccCc-ccCCCceeEEEEEEcCeEEEEEeccccCCcch---HH
Q 003217 633 FERVGS--RQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGR-AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEA---VN 706 (838)
Q Consensus 633 y~~v~s--~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~-~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~---~~ 706 (838)
|..+.. ..-+.-.++||.|..+. .+.. ++.. ...++|. .+.+.+ ..+.++|+||.+.... ..
T Consensus 54 y~~~~~~~~~~~~~G~ailsr~~~~----~~~~-----~~~~~~~~~~~r-~~~~~~--~~~~v~~~h~~~~~~~~~r~~ 121 (259)
T 2jc5_A 54 MHGHWHCAEKRGYSGVAVYSKRKPD----NVQI-----GMGIEEFDREGR-FVRCDF--GRLSVISLYLPSGSSAEERQQ 121 (259)
T ss_dssp CEEEEECCSSTTCCCEEEEESSCCS----EEEE-----SCSCHHHHTTCC-EEEEEE--TTEEEEEEECCCCTTCHHHHH
T ss_pred CeEEEeccCCCCcceEEEEEecCce----eEEe-----CCCCCccCCCCe-EEEEEc--CCEEEEEEeccCCCCCcHHHH
Confidence 332222 22222346778888653 2221 2211 1123443 344444 4799999999887542 22
Q ss_pred HHHHHHHHHHHh
Q 003217 707 RRNADFDHVYRT 718 (838)
Q Consensus 707 ~Rn~d~~~I~~~ 718 (838)
.|.+.++.|.+.
T Consensus 122 ~~~~~~~~l~~~ 133 (259)
T 2jc5_A 122 VKYRFLDAFYPM 133 (259)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 233445555443
|
| >2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0002 Score=75.56 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=25.1
Q ss_pred eeEEEEEEeCCCCCCcc-cccccccCCCCCceEEEEEeecccCc
Q 003217 553 KILAGTWNVGQGRASQD-ALISWLGSAASDVGIVVVGLQEVEMG 595 (838)
Q Consensus 553 ~i~~~twNv~~~~~~~~-~l~~wl~~~~~~~di~vig~QE~~~~ 595 (838)
.+-+.|||+.+...... .+.++|.. .++| ||+|||+...
T Consensus 28 ~l~v~t~Ni~~~~~~~~~~i~~~i~~--~~~D--Ii~LQE~~~~ 67 (285)
T 2o3h_A 28 TLKIASWNVDGLRAWIKKKGLDWVKE--EAPD--ILCLQETKCS 67 (285)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH--HCCS--EEEEECCCCC
T ss_pred ceEEEEEecccChhhhhhhHHHHHHh--cCCC--EEEEEEeecc
Confidence 48899999986432212 25666653 3566 5689998653
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.016 Score=65.02 Aligned_cols=116 Identities=4% Similarity=-0.082 Sum_probs=73.0
Q ss_pred CCCCEEEEEeCC-----CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee----------CCCcE
Q 003217 201 EASGVVWSGHRD-----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------EGGGI 264 (838)
Q Consensus 201 ~dg~~LaSGs~D-----GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS----------~DgtI 264 (838)
++++.++..... ++|-+.|..+. +.+.++.--..+ .|++||||+ |+.+. .+++|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~--------~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTG--------RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTT--------EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCC--------EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEE
Confidence 566777776653 69999999986 455555433446 799999998 66554 47799
Q ss_pred EEEECCCcceeeecCCC-ceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC---CCcEEEEecc
Q 003217 265 KIWPWEAIEKALSLKPE-ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDAR 340 (838)
Q Consensus 265 rvWd~~~~~~~~~~~~~-~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s---~~tI~lWD~~ 340 (838)
.++|..+.+..-.+... .... .. ...-..+++++++.+++.+. .++|.+.|+.
T Consensus 152 sviD~~t~~vv~~I~v~g~~r~-----------------~~------g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~ 208 (426)
T 3c75_H 152 EVFDPVTFLPIADIELPDAPRF-----------------LV------GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLE 208 (426)
T ss_dssp EEECTTTCCEEEEEEETTCCCC-----------------CB------SCCGGGSEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred EEEECCCCcEEEEEECCCcccc-----------------cc------CCCcceEEEcCCCCEEEEEecCCCCeEEEEECC
Confidence 99999775432111100 0000 00 00112345677788887764 3579999999
Q ss_pred CccEEEEEe
Q 003217 341 TRELLKVFN 349 (838)
Q Consensus 341 tg~~l~~l~ 349 (838)
+++.++++.
T Consensus 209 t~kvv~~I~ 217 (426)
T 3c75_H 209 GKTFDRMLD 217 (426)
T ss_dssp TTEEEEEEE
T ss_pred CCeEEEEEE
Confidence 999877664
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.065 Score=56.08 Aligned_cols=186 Identities=13% Similarity=0.123 Sum_probs=112.6
Q ss_pred cEEEEEEecCCCEEEee-C--CCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEE
Q 003217 243 PVLSLCISSYGDLWSGS-E--GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS 319 (838)
Q Consensus 243 ~V~slafs~dG~L~SgS-~--DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las 319 (838)
....|+|++||.|+.++ . ++.|++.|+.+++-.-++.... .....-++.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~----------------------------~~fgeGi~~ 73 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD----------------------------SYFGEGLTL 73 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT----------------------------TCCEEEEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC----------------------------CcceEEEEE
Confidence 46899999998876443 2 6899999998765322211000 001111222
Q ss_pred cCCCCEEEEeCC--CcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcc
Q 003217 320 DHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRN 397 (838)
Q Consensus 320 ~~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~ 397 (838)
. +.++|.+.+ +.+.++|..|.+.+.++... .. .
T Consensus 74 ~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~----------------------------~-------------- 108 (266)
T 2iwa_A 74 L--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK----------------------------D-------------- 108 (266)
T ss_dssp E--TTEEEEEETTCSEEEEEETTTTEEEEEEECC-SS----------------------------S--------------
T ss_pred e--CCEEEEEEecCCEEEEEECCCCcEEEEEECC-CC----------------------------C--------------
Confidence 2 457777774 57999999999887766421 00 0
Q ss_pred eeeecCCcEEEEeccCccccCCCceEEEEEcCCC-cEEEEECCCeEEEEcC-CCCeeeEeecC--Cc---cEEEEEEcCC
Q 003217 398 AIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDP-NGNRLQDFQYL--PF---AVQCLCTFGS 470 (838)
Q Consensus 398 ~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg-~l~Sgs~DgtIrlWD~-~g~~l~tl~~H--~~---~V~sls~dG~ 470 (838)
+ ..+++|| +++.+..+++|.++|. +.+.++++.-. .. .++.+.+.+.
T Consensus 109 -------g-------------------~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg 162 (266)
T 2iwa_A 109 -------G-------------------WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYING 162 (266)
T ss_dssp -------C-------------------CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT
T ss_pred -------e-------------------EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECC
Confidence 0 0012233 3665556789999999 56777776531 12 2445544334
Q ss_pred EEEEEe-eCCeEEEEeCC-Cccccccccc-----------c--cCEEEEEe--CCCE-EEEEcCCCCeeeeecCC
Q 003217 471 QIWVGY-MNGIVQVLDLE-GNLLGGWVAH-----------S--SPVIKMAV--GAGY-IFTLANHGGIRGWNVTS 527 (838)
Q Consensus 471 ~LasGs-~DgtIrlWD~~-g~~i~~l~gH-----------~--~~V~sla~--dg~~-l~S~S~DgtIrlWdl~s 527 (838)
+||+.. .++.|.+-|++ ++.+..+... . ...+.|++ +++. ++++.....|..-++..
T Consensus 163 ~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 163 EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 677766 47899999987 6765555321 1 35577875 4554 55777788887777654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.038 Score=57.54 Aligned_cols=174 Identities=15% Similarity=0.117 Sum_probs=101.7
Q ss_pred ccEEEEEEecCCCEE-EeeCCC--cEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEE
Q 003217 242 GPVLSLCISSYGDLW-SGSEGG--GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL 318 (838)
Q Consensus 242 ~~V~slafs~dG~L~-SgS~Dg--tIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~la 318 (838)
.....|.|+ ++.|+ |++.+| .|++.|+++++-..+..... ..-.--++
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~----------------------------~~FgeGit 93 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK----------------------------RYFGEGIS 93 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT----------------------------TCCEEEEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC----------------------------ccceeEEE
Confidence 446789998 67765 777766 99999998865332221100 00011122
Q ss_pred EcCCCCEEEEeCC--CcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCc
Q 003217 319 SDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR 396 (838)
Q Consensus 319 s~~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~ 396 (838)
. .+.+||.+.+ +.+.++|..|.+.++++...+.-
T Consensus 94 ~--~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG------------------------------------------ 129 (262)
T 3nol_A 94 D--WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG------------------------------------------ 129 (262)
T ss_dssp E--ETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC------------------------------------------
T ss_pred E--eCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc------------------------------------------
Confidence 2 2567887774 57899999999988877532100
Q ss_pred ceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeec--CCcc---EEEEEEcCC
Q 003217 397 NAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY--LPFA---VQCLCTFGS 470 (838)
Q Consensus 397 ~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~--H~~~---V~sls~dG~ 470 (838)
- .++. +++.|+....++.|.++|. +.+.++++.- +..+ ++-+.+.+.
T Consensus 130 -------~-------------------glt~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G 182 (262)
T 3nol_A 130 -------W-------------------GLTH-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDG 182 (262)
T ss_dssp -------C-------------------CEEE-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETT
T ss_pred -------e-------------------EEec-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECC
Confidence 0 0111 1223555555677999999 6787777653 2222 344544333
Q ss_pred EEEEEe-eCCeEEEEeCC-Cccccccccc------------ccCEEEEEeC--CCEEEEEc
Q 003217 471 QIWVGY-MNGIVQVLDLE-GNLLGGWVAH------------SSPVIKMAVG--AGYIFTLA 515 (838)
Q Consensus 471 ~LasGs-~DgtIrlWD~~-g~~i~~l~gH------------~~~V~sla~d--g~~l~S~S 515 (838)
+||+.. .+..|.+.|++ |+.+..+... .+..+.||.+ ++.++-.+
T Consensus 183 ~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 183 EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 677766 58899999987 6654443321 1345778864 45555443
|
| >1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00037 Score=75.12 Aligned_cols=129 Identities=14% Similarity=0.155 Sum_probs=61.1
Q ss_pred eeEEEEEEeCCCCCC-cccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCCCC
Q 003217 553 KILAGTWNVGQGRAS-QDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGS 631 (838)
Q Consensus 553 ~i~~~twNv~~~~~~-~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~ 631 (838)
.+-+.|||+.+.... ...+.++|.. .++|| |+|||+...... ....+.+.. +.
T Consensus 61 ~lrv~t~Nv~g~~~~~~~~i~~~i~~--~~~DI--i~LQE~~~~~~~--------------------~~~~l~~~~--gy 114 (318)
T 1hd7_A 61 TLKICSWNVDGLRAWIKKKGLDWVKE--EAPDI--LCLQETKCSENK--------------------LPAELQELP--GL 114 (318)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH--HCCSE--EEEECCCCCC---------------------------------CC
T ss_pred ceEEEEEecCcchhhhhhhHHHHHHh--hCCCE--EEEEEccCchhh--------------------ccHHHHhcC--CC
Confidence 488999999854321 1225666663 35665 689998643210 001111111 22
Q ss_pred CEEEEee-e-ecccEEEEEEEecCCcCccCceeeceeecccCc-ccCCCceeEEEEEEcCeEEEEEeccccCCcc---hH
Q 003217 632 TFERVGS-R-QLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGR-AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE---AV 705 (838)
Q Consensus 632 ~y~~v~s-~-~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~-~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~---~~ 705 (838)
.|..... . .-+.-.++||.|..+.. +.. ++.. .....|- .+.+.+ ..|.++|+|+..... ..
T Consensus 115 ~~~~~~~~~~~~g~~Gvailsr~~~~~----~~~-----~~~~~~~~~~~r-~l~~~~--~~~~v~~vh~p~~~~~~~~~ 182 (318)
T 1hd7_A 115 SHQYWSAPSDKEGYSGVGLLSRQCPLK----VSY-----GIGDEEHDQEGR-VIVAEF--DSFVLVTAYVPNAGRGLVRL 182 (318)
T ss_dssp CEEEEECC-----CCCEEEEESSCCSE----EEE-----SCSCGGGSSSSC-EEEEEC--SSCEEEEEECCCCCGGGTTH
T ss_pred ceEEEecCCCCCccceEEEEEcCCcee----EEe-----cCCCcccCCCCc-EEEEEc--CCEEEEEEEcCCCCCccccH
Confidence 1222221 1 22212467788876431 211 2211 1223343 233433 479999999976643 23
Q ss_pred HHHHHHHHHHHHhc
Q 003217 706 NRRNADFDHVYRTM 719 (838)
Q Consensus 706 ~~Rn~d~~~I~~~l 719 (838)
+.|.+.++.|...+
T Consensus 183 ~~r~~~~~~l~~~l 196 (318)
T 1hd7_A 183 EYRQRWDEAFRKFL 196 (318)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666665543
|
| >2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0012 Score=74.97 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=26.0
Q ss_pred eeEEEEEEeCCCCCCc----ccccccccCCCCCceEEEEEeecccC
Q 003217 553 KILAGTWNVGQGRASQ----DALISWLGSAASDVGIVVVGLQEVEM 594 (838)
Q Consensus 553 ~i~~~twNv~~~~~~~----~~l~~wl~~~~~~~di~vig~QE~~~ 594 (838)
.|-+.||||++..... +.+.+||.. .++|| |||||+..
T Consensus 149 ~LKI~TwNVnGl~~~~kr~~~~i~~~I~~--~~pDI--VcLQEtk~ 190 (467)
T 2j63_A 149 MYKFITWNVAGLRGLLKKNASALRAFMEA--EKPDV--LCLQETKL 190 (467)
T ss_dssp EEEEEEEECSCHHHHHHHCTTHHHHHHHH--HCCSE--EEEECCCC
T ss_pred CeEEEEEEcCCCcccccccHHHHHHHHHH--cCCCE--EEEEeccc
Confidence 4889999998643211 357777774 35664 68999865
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.093 Score=61.51 Aligned_cols=66 Identities=11% Similarity=0.076 Sum_probs=42.2
Q ss_pred EEEEeCCCcEEEEECCCCccCCCCCcceeEEec--ccc--ccEEEEEEecCCCEEEee------CCCcEEEEECCCccee
Q 003217 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--AHR--GPVLSLCISSYGDLWSGS------EGGGIKIWPWEAIEKA 275 (838)
Q Consensus 206 LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~--gH~--~~V~slafs~dG~L~SgS------~DgtIrvWd~~~~~~~ 275 (838)
|+.++.|+.+..+|..+| +.+-... .+. ..+++--.-.+|.++.++ .++.|+.+|.++++..
T Consensus 124 V~v~t~dg~l~AlDa~TG--------~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETG--------ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp EEEECTTSEEEEEETTTC--------CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred EEEEcCCCEEEEEECCCC--------CEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEE
Confidence 889999999999999998 4443321 211 022211111256776655 3899999999988776
Q ss_pred eecC
Q 003217 276 LSLK 279 (838)
Q Consensus 276 ~~~~ 279 (838)
.+..
T Consensus 196 W~~~ 199 (599)
T 1w6s_A 196 WRAY 199 (599)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 5543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.064 Score=63.78 Aligned_cols=111 Identities=9% Similarity=0.054 Sum_probs=58.7
Q ss_pred CCeEEEEeCC-CcccccccccccCE-EEEEeCCCEEEEEcCCCCeeeeecCCCCCCchhhhh-hhhccccccccccceee
Q 003217 478 NGIVQVLDLE-GNLLGGWVAHSSPV-IKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCK-ELAGKEFLYTRMENLKI 554 (838)
Q Consensus 478 DgtIrlWD~~-g~~i~~l~gH~~~V-~sla~dg~~l~S~S~DgtIrlWdl~s~~~~d~~~~~-~l~~r~~~y~~~~~~~i 554 (838)
+|.|..||+. |+.+=....+.... ..+...+..++.++.|+.++.||..+...+-.+... .....-..|...+. +
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~--~ 514 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR--Q 514 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE--E
T ss_pred cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCE--E
Confidence 4889999986 66543333222221 234567889999999999999998775544322110 01111112223333 4
Q ss_pred EEEEEEeCCCCCC--cccccccccCCCCCceEEEEEeec
Q 003217 555 LAGTWNVGQGRAS--QDALISWLGSAASDVGIVVVGLQE 591 (838)
Q Consensus 555 ~~~twNv~~~~~~--~~~l~~wl~~~~~~~di~vig~QE 591 (838)
|+..-.-.+.... ..+|..|+... ..-.|+++.+..
T Consensus 515 yva~~~G~g~~~~~~~~~~~~~~~~~-~~~~i~~~~l~g 552 (668)
T 1kv9_A 515 YVAIMAGWGGVATLTGGESMNLPGMK-NRSRLLVFALDG 552 (668)
T ss_dssp EEEEEECCCSHHHHHCCGGGGSTTCC-CCCEEEEEEETC
T ss_pred EEEEEecCCCccccccccccccccCC-CCCeEEEEEcCc
Confidence 5544332111110 12345666533 233688888865
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.14 Score=60.92 Aligned_cols=77 Identities=25% Similarity=0.448 Sum_probs=51.2
Q ss_pred CCCeEEEEcC-CCCeeeEeecCCccE-EEEEEcCCEEEEEeeCCeEEEEeCC-Ccccccccccc----cCEEEEEeCCC-
Q 003217 438 ANGLLLQWDP-NGNRLQDFQYLPFAV-QCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS----SPVIKMAVGAG- 509 (838)
Q Consensus 438 ~DgtIrlWD~-~g~~l~tl~~H~~~V-~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~----~~V~sla~dg~- 509 (838)
.+|.|..||+ +|+.+-.+..+.... ..+...|..|++|+.|+.|++||.+ |+.+..+.... .++. ...+|+
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~-~~~~G~~ 514 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMT-FELAGRQ 514 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE-EEETTEE
T ss_pred ccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceE-EEECCEE
Confidence 3578999999 787765554332221 2456688899999999999999987 78776665443 2332 235666
Q ss_pred EEEEEc
Q 003217 510 YIFTLA 515 (838)
Q Consensus 510 ~l~S~S 515 (838)
+++.++
T Consensus 515 yva~~~ 520 (668)
T 1kv9_A 515 YVAIMA 520 (668)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 455444
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.057 Score=62.96 Aligned_cols=69 Identities=7% Similarity=0.072 Sum_probs=44.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe--ccccc--cEEEEEEecCCCEEEeeC------CCcEEEEECCCc
Q 003217 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRG--PVLSLCISSYGDLWSGSE------GGGIKIWPWEAI 272 (838)
Q Consensus 203 g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l--~gH~~--~V~slafs~dG~L~SgS~------DgtIrvWd~~~~ 272 (838)
++.|+.++.|+.+..+|..+| +.+-+. .+|.. .+++--.-.++.++.++. ++.|..+|.+++
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG--------~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG 186 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTG--------KINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTG 186 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTC--------CEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTC
T ss_pred CCEEEEEeCCCEEEEEECCCC--------CEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCC
Confidence 578899999999999999988 444332 22211 222111112567766654 799999999988
Q ss_pred ceeeecC
Q 003217 273 EKALSLK 279 (838)
Q Consensus 273 ~~~~~~~ 279 (838)
+...+..
T Consensus 187 ~~~W~~~ 193 (571)
T 2ad6_A 187 ELKWRAF 193 (571)
T ss_dssp CEEEEEE
T ss_pred cEEEEEc
Confidence 7665543
|
| >2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00092 Score=69.17 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=27.0
Q ss_pred eEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeeccc
Q 003217 554 ILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVE 593 (838)
Q Consensus 554 i~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~ 593 (838)
|-+.|||+++.+...+.|.+||.. .++|| ++|||..
T Consensus 8 mki~s~Nvn~~r~~~~~l~~~l~~--~~~DI--l~LQEt~ 43 (240)
T 2ei9_A 8 LRIGQINLGGAEDATRELPSIARD--LGLDI--VLVQEQY 43 (240)
T ss_dssp EEEEEEECTTCHHHHHTHHHHHHH--HTCSE--EEEESCC
T ss_pred ceEEEEecCccHHHHHHHHHHHHH--cCCCE--EEeecce
Confidence 678999999876655568888885 35565 5799974
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.066 Score=55.79 Aligned_cols=158 Identities=11% Similarity=0.131 Sum_probs=92.6
Q ss_pred ceeEEEEecCCEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEE-E
Q 003217 133 CFLRTIVCTEEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS-G 209 (838)
Q Consensus 133 ~~~~~l~~~~~~l~~g--~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaS-G 209 (838)
.|-+-|..+++.||.+ .++.|++.|+++...... . .+..+|- -.++++ ++.||. .
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~---------~--l~~~~Fg---------eGit~~--g~~Ly~lt 112 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWM---------E--RLGNIFA---------EGLASD--GERLYQLT 112 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEE---------E--ECTTCCE---------EEEEEC--SSCEEEEE
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeE---------E--CCCCcce---------eEEEEe--CCEEEEEE
Confidence 4667778888999984 467899999988654432 0 1111121 114443 444454 4
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEE
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~ 288 (838)
..++.+.++|.++. +.+.++.--.. ...+++||+ |+.+..++.|.++|.++.+..-++..
T Consensus 113 w~~~~v~V~D~~Tl--------~~~~ti~~~~e---GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V-------- 173 (268)
T 3nok_A 113 WTEGLLFTWSGMPP--------QRERTTRYSGE---GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV-------- 173 (268)
T ss_dssp SSSCEEEEEETTTT--------EEEEEEECSSC---CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC--------
T ss_pred ccCCEEEEEECCcC--------cEEEEEeCCCc---eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe--------
Confidence 57889999999986 55666542211 233445666 77655688999999877442211110
Q ss_pred EEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC--CcEEEEeccCccEEEEEe
Q 003217 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFN 349 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~ 349 (838)
...+. +.....-+... +++||...+ ..|.+-|.+||+++..+.
T Consensus 174 -------------~~~g~---~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Id 218 (268)
T 3nok_A 174 -------------KLRGQ---PVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVID 218 (268)
T ss_dssp -------------EETTE---ECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred -------------CCCCc---ccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence 00000 01112223333 336887664 579999999999988764
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.24 Score=50.94 Aligned_cols=177 Identities=13% Similarity=0.108 Sum_probs=103.8
Q ss_pred cc--cccEEEEEEecCCCEE-EeeCC--CcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCC
Q 003217 239 AH--RGPVLSLCISSYGDLW-SGSEG--GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSD 313 (838)
Q Consensus 239 gH--~~~V~slafs~dG~L~-SgS~D--gtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~ 313 (838)
.| ...+..|.|++ +.|+ |.+.+ ..|++.|+++++-..+..... . .-
T Consensus 16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-----------------~-----------~f 66 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-----------------P-----------YF 66 (243)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-----------------T-----------CC
T ss_pred CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-----------------C-----------cc
Confidence 45 35678999987 6765 66665 499999998865332221100 0 00
Q ss_pred eEEEEEcCCCCEEEEeCC--CcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeE
Q 003217 314 IKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (838)
Q Consensus 314 v~~las~~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~ 391 (838)
.--++. .+.+||...+ +.+.++|..|.++++++...+.-
T Consensus 67 geGi~~--~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G------------------------------------- 107 (243)
T 3mbr_X 67 GAGIVA--WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG------------------------------------- 107 (243)
T ss_dssp EEEEEE--ETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-------------------------------------
T ss_pred eeEEEE--eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-------------------------------------
Confidence 111222 2467777774 57899999999988877531100
Q ss_pred eecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeec--CCc---cEEEE
Q 003217 392 FQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY--LPF---AVQCL 465 (838)
Q Consensus 392 ~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~--H~~---~V~sl 465 (838)
..++. .++.|+.+..++.|.++|. +.+.++++.- +.. .++-+
T Consensus 108 -------------------------------wglt~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL 155 (243)
T 3mbr_X 108 -------------------------------WALTS-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL 155 (243)
T ss_dssp -------------------------------CEEEE-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred -------------------------------eEEee-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence 01111 1234666566778999999 6777777764 222 34455
Q ss_pred EEcCCEEEEEe-eCCeEEEEeCC-Cccccccccc------------c-cCEEEEEeC--CCEEEEEc
Q 003217 466 CTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWVAH------------S-SPVIKMAVG--AGYIFTLA 515 (838)
Q Consensus 466 s~dG~~LasGs-~DgtIrlWD~~-g~~i~~l~gH------------~-~~V~sla~d--g~~l~S~S 515 (838)
...+.+|++.. .+..|.+-|++ |+.+..+... . +..+.||.| ++.++-.+
T Consensus 156 e~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 156 EWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 45444566665 57899999987 6654443311 1 345778864 44554333
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.99 Score=49.46 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=61.2
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 003217 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNA 222 (838)
Q Consensus 144 ~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~ 222 (838)
.|+.+..+.|+..++...... ..+.+......+++++. +.+.|+-...+.|..+++++
T Consensus 89 ~l~~~~~~~I~~i~~~~~~~~---------------------~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g 147 (386)
T 3v65_B 89 VLLFANRIDIRQVLPHRSEYT---------------------LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNG 147 (386)
T ss_dssp EEEEECBSCEEEECTTSCCCE---------------------EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eeEeecCccceeeccCCCcEE---------------------EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 555566678888887542211 01111335778999975 55666766778999999987
Q ss_pred CccCCCCCcceeEEeccccccEEEEEEecC-CCE-EEeeCCCcEEEEECCC
Q 003217 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWPWEA 271 (838)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L-~SgS~DgtIrvWd~~~ 271 (838)
+ .....+.........|++++. |.| |+-+..+.|.+.++++
T Consensus 148 ~--------~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg 190 (386)
T 3v65_B 148 S--------NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 190 (386)
T ss_dssp C--------CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred C--------CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence 5 211112222234467899975 455 5666677888877754
|
| >3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.001 Score=69.27 Aligned_cols=37 Identities=27% Similarity=0.499 Sum_probs=24.9
Q ss_pred eEEEEEEeCCCCCCcc-cccccccCCCCCceEEEEEeecccC
Q 003217 554 ILAGTWNVGQGRASQD-ALISWLGSAASDVGIVVVGLQEVEM 594 (838)
Q Consensus 554 i~~~twNv~~~~~~~~-~l~~wl~~~~~~~di~vig~QE~~~ 594 (838)
|-+.|||+++...... .+.+||.. .++|| |+|||+..
T Consensus 4 l~i~s~Nv~g~~~~~~~~l~~~i~~--~~~DI--v~LQEt~~ 41 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRKGFLKWFME--EKPDI--LCLQEIKA 41 (265)
T ss_dssp EEEEEEECSCHHHHHHHTHHHHHHH--HCCSE--EEEECCCS
T ss_pred cEEEEEEcCCchhhhhhhHHHHHHh--cCCCE--EEEEeccc
Confidence 6788999987543222 46777764 35565 57999864
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.16 Score=53.80 Aligned_cols=103 Identities=13% Similarity=0.063 Sum_probs=63.5
Q ss_pred eEEEEEcCCCc-EEEE-ECCCeEEEEcCCCC---eeeEeecCCccEEEEEEc--CCEEEEEee-----------CCeEEE
Q 003217 422 TEALTTSIDGM-IWTG-GANGLLLQWDPNGN---RLQDFQYLPFAVQCLCTF--GSQIWVGYM-----------NGIVQV 483 (838)
Q Consensus 422 v~ala~S~dg~-l~Sg-s~DgtIrlWD~~g~---~l~tl~~H~~~V~sls~d--G~~LasGs~-----------DgtIrl 483 (838)
...+++++||. |+.+ +.++.|.++++.+. ..+.+..... ...++.| |. ||++.. .+.|..
T Consensus 187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~ 264 (322)
T 2fp8_A 187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIK 264 (322)
T ss_dssp CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEE
T ss_pred CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC-EEEEecCcccccccCCCccEEEE
Confidence 34689999986 6655 45578999998542 1222221122 4556664 54 666553 367899
Q ss_pred EeCCCcccccccccc----cCEEEEEe-CCCEEEEEcCCCCeeeeecC
Q 003217 484 LDLEGNLLGGWVAHS----SPVIKMAV-GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 484 WD~~g~~i~~l~gH~----~~V~sla~-dg~~l~S~S~DgtIrlWdl~ 526 (838)
+|..|+.+..+.... ..+.+++. +++..++....+.|.++++.
T Consensus 265 ~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 265 FDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp ECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred ECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 999888776665442 34566654 44444555677788888754
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.023 Score=59.47 Aligned_cols=109 Identities=7% Similarity=0.017 Sum_probs=79.1
Q ss_pred eEEEEEcCCCcEEEEEC---CCeEEEEcC-CCCeeeEeecCC-ccEEEEEEcCCEEEEEee-CCeEEEEeCC-Ccccccc
Q 003217 422 TEALTTSIDGMIWTGGA---NGLLLQWDP-NGNRLQDFQYLP-FAVQCLCTFGSQIWVGYM-NGIVQVLDLE-GNLLGGW 494 (838)
Q Consensus 422 v~ala~S~dg~l~Sgs~---DgtIrlWD~-~g~~l~tl~~H~-~~V~sls~dG~~LasGs~-DgtIrlWD~~-g~~i~~l 494 (838)
...+++++|++|+.++. +++|++.|+ +|+.++++.... .....++++|++||.+.. ++.|.++|.+ .+.+.++
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i 102 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNF 102 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEE
Confidence 45688999889887664 578999999 799888875322 233467778888888774 8899999987 5677766
Q ss_pred cccccCEEEEEeCCCEEEEEcCCCCeeeeecCCCCC
Q 003217 495 VAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 495 ~gH~~~V~sla~dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
..-...=+.++.||+.++.+..+++|.+.|..+...
T Consensus 103 ~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v 138 (266)
T 2iwa_A 103 THQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKL 138 (266)
T ss_dssp ECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCE
T ss_pred ECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcE
Confidence 422122256888988777666788899998766443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.49 Score=55.13 Aligned_cols=52 Identities=19% Similarity=0.327 Sum_probs=34.8
Q ss_pred CCeEEEEeCC-CcccccccccccCEE--EEEeCCCEEEEEcCCCCeeeeecCCCCC
Q 003217 478 NGIVQVLDLE-GNLLGGWVAHSSPVI--KMAVGAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 478 DgtIrlWD~~-g~~i~~l~gH~~~V~--sla~dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
+|.|..||+. |+.+=....+. .++ .+...+..++.++.|+.++.||.++...
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence 6889999986 66542222221 121 1345677888899999999999876544
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.31 Score=56.44 Aligned_cols=259 Identities=11% Similarity=0.047 Sum_probs=138.5
Q ss_pred cCCEEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEE-c-CCCCEEEEEe------
Q 003217 141 TEEQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVG-D-EASGVVWSGH------ 210 (838)
Q Consensus 141 ~~~~l~~g~--d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~-s-~dg~~LaSGs------ 210 (838)
+++.||+.. ++.|.+-|+++...... . ..| . ......+++ + |++++|+.++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~i------------i-~ip-----~-g~~phg~~~~~~p~~~~v~~~~~~~~p~ 160 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAI------------L-EIP-----N-AKGIHGLRPQKWPRSNYVFCNGEDETPL 160 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEE------------E-ECS-----S-CCSEEEEEECCSSBCSEEEEEECSCEES
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeE------------E-eCC-----C-CCCCcceeeeecCCCcEEEEeccccccc
Confidence 577889854 45799999987654321 0 011 0 224566777 5 8999999984
Q ss_pred ------------CCCcEEEEECCCCccCCCCCcceeEEec-cccccEEEEEEecCCC-EEEeeCC---------------
Q 003217 211 ------------RDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGSEG--------------- 261 (838)
Q Consensus 211 ------------~DGtIrvWd~~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~-L~SgS~D--------------- 261 (838)
+++.+-+.|.++. +...++. +- + -..++++|||+ +++.+.+
T Consensus 161 ~~dg~~l~~~~~~~~~vtvID~~t~--------~v~~qI~Vgg-~-pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~ 230 (595)
T 1fwx_A 161 VNDGTNMEDVANYVNVFTAVDADKW--------EVAWQVLVSG-N-LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM 230 (595)
T ss_dssp SCSSSSTTCGGGEEEEEEEEETTTT--------EEEEEEEESS-C-CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred CCCCcccccccccCceEEEEECCCC--------eEEEEEEeCC-C-ccceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence 4458889998875 3333322 11 2 24578999998 5565544
Q ss_pred CcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeec-CCeEEEEEcCCCCEEEEeC--CCcEEEEe
Q 003217 262 GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILT-SDIKNLLSDHSRAKVWSAG--FLSFALWD 338 (838)
Q Consensus 262 gtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s-~~v~~las~~~~~~V~s~s--~~tI~lWD 338 (838)
..|.|-|+...+.... .+.... .-.=+.++.+......-+..++. .....+.++++|..++.++ ..+|.++|
T Consensus 231 d~v~V~~~~~~~~~v~---~Gk~~~--i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid 305 (595)
T 1fwx_A 231 DHIVVFNIAEIEKAIA---AGDYQE--LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLD 305 (595)
T ss_dssp EEEEEEEHHHHHHHHH---HTCSEE--ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEE
T ss_pred ceEEEeeccceeEecc---CCCeeE--ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEE
Confidence 2466666543221100 000000 00011233332100000111211 1234567788888777765 46899999
Q ss_pred ccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccC
Q 003217 339 ARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDD 418 (838)
Q Consensus 339 ~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~ 418 (838)
+.+.+.. +. +.. +. ... +.+. ..-
T Consensus 306 ~~~~~~~--~~--~~l--------------~~------------~~~-------------v~~~-------------v~v 329 (595)
T 1fwx_A 306 VTRFDAV--FY--ENA--------------DP------------RSA-------------VVAE-------------PEL 329 (595)
T ss_dssp GGGHHHH--HH--SCC--------------CG------------GGG-------------EEEC-------------CBC
T ss_pred Ccccccc--cc--ccc--------------Cc------------ccc-------------eEEE-------------cCC
Confidence 8764310 00 000 00 000 0000 001
Q ss_pred CCceEEEEEcCCCcEEE-EECCCeEEEEcC-C----------CCeeeEeecCCccE--EE-----EEEcCCEEEEEee--
Q 003217 419 NRRTEALTTSIDGMIWT-GGANGLLLQWDP-N----------GNRLQDFQYLPFAV--QC-----LCTFGSQIWVGYM-- 477 (838)
Q Consensus 419 ~~~v~ala~S~dg~l~S-gs~DgtIrlWD~-~----------g~~l~tl~~H~~~V--~s-----ls~dG~~LasGs~-- 477 (838)
......++|++||.+++ .--|++|.+||+ + .+.++++..|-.+- .. +.+||++|+++..
T Consensus 330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~s 409 (595)
T 1fwx_A 330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS 409 (595)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCC
Confidence 12244678999997654 446899999998 5 35667776665432 21 2468999999763
Q ss_pred -CCe----------EEEEeCCCc
Q 003217 478 -NGI----------VQVLDLEGN 489 (838)
Q Consensus 478 -Dgt----------IrlWD~~g~ 489 (838)
|+. -+|.|++|.
T Consensus 410 kdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 410 KDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp TTSSCCCCSSCCEEEEEEECSSS
T ss_pred ccccccCCCCCCCcceEEEcCCC
Confidence 443 288888753
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.46 E-value=1.2 Score=47.27 Aligned_cols=102 Identities=14% Similarity=0.150 Sum_probs=60.2
Q ss_pred EEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC
Q 003217 145 LWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNAR 223 (838)
Q Consensus 145 l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g 223 (838)
|+.+..+.|+..|+....... . +........+++++++ .+.|+-..++.|..+++++.
T Consensus 4 ll~~~~~~I~~i~~~~~~~~~------------------~---~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~ 62 (316)
T 1ijq_A 4 LFFTNRHEVRKMTLDRSEYTS------------------L---IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRA 62 (316)
T ss_dssp EEEECBSSEEEEETTSCCCEE------------------E---ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---
T ss_pred EEEECCCeEEEEECCCcceEe------------------h---hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCC
Confidence 555667789999986532110 0 1113356789999865 56666667789999998761
Q ss_pred ccCCCCCcceeEEeccccccEEEEEEecC-CCE-EEeeCCCcEEEEECCC
Q 003217 224 LLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWPWEA 271 (838)
Q Consensus 224 ~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L-~SgS~DgtIrvWd~~~ 271 (838)
.. .. .....+...-....+|++++. +.| |+-...+.|.+.++++
T Consensus 63 ~~--~~--~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 63 HG--VS--SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp ---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CC--Cc--ccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 00 00 111122222234578999974 456 5667788999988764
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.1 Score=54.22 Aligned_cols=160 Identities=9% Similarity=0.125 Sum_probs=93.1
Q ss_pred ceeEEEEecCCEEEEec--C--CCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEE
Q 003217 133 CFLRTIVCTEEQLWAGG--E--NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (838)
Q Consensus 133 ~~~~~l~~~~~~l~~g~--d--~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaS 208 (838)
.|-+-|..+++.||.++ + +.|++.|++++..... -..+..+|- -.+++ +++.||.
T Consensus 43 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~----------~~l~~~~Fg---------eGit~--~g~~ly~ 101 (262)
T 3nol_A 43 AFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQ----------IELGKRYFG---------EGISD--WKDKIVG 101 (262)
T ss_dssp CEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEE----------EECCTTCCE---------EEEEE--ETTEEEE
T ss_pred cccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEE----------EecCCccce---------eEEEE--eCCEEEE
Confidence 46677777777999754 4 3899999988654332 000111121 11333 3556666
Q ss_pred Ee-CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeee
Q 003217 209 GH-RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (838)
Q Consensus 209 Gs-~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~ 286 (838)
.. .++.+.++|.++. +.+.++.--. ....+++||+ |+....++.|.++|.++.+..-+...
T Consensus 102 ltw~~~~v~v~D~~t~--------~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V------ 164 (262)
T 3nol_A 102 LTWKNGLGFVWNIRNL--------RQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV------ 164 (262)
T ss_dssp EESSSSEEEEEETTTC--------CEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC------
T ss_pred EEeeCCEEEEEECccC--------cEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe------
Confidence 65 5789999999986 5555554211 2234556776 77655577899999877432211110
Q ss_pred EEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC--CcEEEEeccCccEEEEEec
Q 003217 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNI 350 (838)
Q Consensus 287 ~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~~ 350 (838)
..++. +-....-+... +++||...+ +.|.+.|.+||+++.++..
T Consensus 165 ---------------~~~g~---~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 165 ---------------TAHGE---ELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp ---------------EETTE---ECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred ---------------ccCCc---cccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 00000 01112223332 347887764 5799999999999887753
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.65 Score=52.05 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=48.5
Q ss_pred EEEEcCCCCEEEEEeCC------CcEEEEECCCCccCCCCCcceeEEecc--cc-ccEEEEEEecCCC-EEEee------
Q 003217 196 CMVGDEASGVVWSGHRD------GRIMCWKMNARLLDSDDGFGEVLSWQA--HR-GPVLSLCISSYGD-LWSGS------ 259 (838)
Q Consensus 196 ~la~s~dg~~LaSGs~D------GtIrvWd~~~g~~~~~~~~~~~~~l~g--H~-~~V~slafs~dG~-L~SgS------ 259 (838)
-+.+.|+| +++|...+ |.|-+.|.++. +.+.+|.- +. .--..+.|+|+++ ++|..
T Consensus 142 ~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~--------~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~ 212 (462)
T 2ece_A 142 TVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF--------EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNT 212 (462)
T ss_dssp EEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC--------CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHH
T ss_pred ceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC--------eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccc
Confidence 45677888 77776666 78999999886 56667752 22 1233578899998 55654
Q ss_pred -------------CCCcEEEEECCCc
Q 003217 260 -------------EGGGIKIWPWEAI 272 (838)
Q Consensus 260 -------------~DgtIrvWd~~~~ 272 (838)
.+.+|.+||+.+.
T Consensus 213 ~~~g~~~~~~~~~~~d~V~v~D~~~~ 238 (462)
T 2ece_A 213 IEDGLKLEHLKDRYGNRIHFWDLRKR 238 (462)
T ss_dssp HTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred cccccchhhhhhccCCEEEEEECCCC
Confidence 3789999999764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.27 Score=55.14 Aligned_cols=74 Identities=15% Similarity=0.127 Sum_probs=44.2
Q ss_pred EEEEEc--CCCCEEEE-EeCCCcEEEEECCCCccCCCCCcceeEEec--------cccccEEEEEEecCCCEEEeeCC--
Q 003217 195 MCMVGD--EASGVVWS-GHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--------AHRGPVLSLCISSYGDLWSGSEG-- 261 (838)
Q Consensus 195 ~~la~s--~dg~~LaS-Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~--------gH~~~V~slafs~dG~L~SgS~D-- 261 (838)
+|.+++ +++++|+. |-.+++|.+.|+.+.. ...+...+++ |-+ .-..+..+|+|-++|+..+
T Consensus 85 ~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p----~~p~~~k~ie~~~~~~~~g~s-~Ph~~~~~pdGi~Vs~~g~~~ 159 (462)
T 2ece_A 85 LCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNP----REPKIIKVIEPEEVKKVSGYS-RLHTVHCGPDAIYISALGNEE 159 (462)
T ss_dssp GSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCT----TSCEEEEEECHHHHHHHHCEE-EEEEEEECSSCEEEEEEEETT
T ss_pred cccccCCCccCCEEEEccCCCCeEEEEECCCCC----CCceeeeeechhhcccccCCC-cccceeECCCeEEEEcCCCcC
Confidence 444556 67766555 5677899999987631 1112333331 111 2345778899932454444
Q ss_pred ----CcEEEEECCCcc
Q 003217 262 ----GGIKIWPWEAIE 273 (838)
Q Consensus 262 ----gtIrvWd~~~~~ 273 (838)
+.|-+.|.++.+
T Consensus 160 g~~~g~v~vlD~~T~~ 175 (462)
T 2ece_A 160 GEGPGGILMLDHYSFE 175 (462)
T ss_dssp SCSCCEEEEECTTTCC
T ss_pred CCCCCeEEEEECCCCe
Confidence 789999987654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.30 E-value=1.6 Score=47.06 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=48.5
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecC-CCE-EEeeCCCcEEEEE
Q 003217 192 SSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWP 268 (838)
Q Consensus 192 ~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L-~SgS~DgtIrvWd 268 (838)
..+..+++++. +.+.|+-...+.|..++++++. .............+|++++. |.| |+-+..+.|.+.+
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~--------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~ 144 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN--------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 144 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCC--------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEc
Confidence 35788999965 4566666678899999998752 11112222234568999975 455 6777778899988
Q ss_pred CCC
Q 003217 269 WEA 271 (838)
Q Consensus 269 ~~~ 271 (838)
+++
T Consensus 145 ~dG 147 (349)
T 3v64_C 145 LDG 147 (349)
T ss_dssp TTS
T ss_pred CCC
Confidence 865
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.29 E-value=1.4 Score=46.95 Aligned_cols=102 Identities=15% Similarity=0.092 Sum_probs=63.1
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 003217 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNA 222 (838)
Q Consensus 144 ~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~ 222 (838)
.|+.+....|+..|++.... +...+. . +...+..|+|++. +.+.|+-...+.|..+++++
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~---------------~~~~~~-~---~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g 66 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKE---------------NATIVV-G---GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 66 (318)
T ss_dssp EEEEECEEEEEEEETTCTTS---------------CCEEEE-E---EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTS
T ss_pred EEEEEccCeEEEEECCCCce---------------EEEEEe-c---CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccC
Confidence 35556667899999865321 001111 1 1225678999984 56777777888999999887
Q ss_pred CccCCCCCcceeEEeccccccEEEEEEecC-CCE-EEeeCCCcEEEEECCC
Q 003217 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWPWEA 271 (838)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L-~SgS~DgtIrvWd~~~ 271 (838)
+. .....+..--....+|++++. |.| |+-+..+.|.+.++++
T Consensus 67 ~~-------~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 110 (318)
T 3sov_A 67 TE-------SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG 110 (318)
T ss_dssp SS-------CCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CC-------ceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC
Confidence 51 111111111234568999974 555 6766778999998865
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.33 Score=57.29 Aligned_cols=70 Identities=16% Similarity=0.090 Sum_probs=43.8
Q ss_pred EEEEcCCCCEEEEEeCC-CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCE-EEee-CC-----CcEEEE
Q 003217 196 CMVGDEASGVVWSGHRD-GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGS-EG-----GGIKIW 267 (838)
Q Consensus 196 ~la~s~dg~~LaSGs~D-GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS-~D-----gtIrvW 267 (838)
++++..+|++++.|+.+ ..+.+||..+.. +.....+...+.. .++++.++|+| +.|+ .+ ..+.+|
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~------W~~~~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~y 319 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDS------WIPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVY 319 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTE------EEECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCc------eeECCCCCccccc-cceEEecCCeEEEEeCcccCCcccccceEe
Confidence 46677899999999854 579999987641 1111112111211 24556678985 5666 44 578999
Q ss_pred ECCCc
Q 003217 268 PWEAI 272 (838)
Q Consensus 268 d~~~~ 272 (838)
|..+.
T Consensus 320 d~~t~ 324 (656)
T 1k3i_A 320 SPSSK 324 (656)
T ss_dssp ETTTT
T ss_pred CCCCC
Confidence 98653
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.13 E-value=2.2 Score=46.99 Aligned_cols=103 Identities=13% Similarity=0.121 Sum_probs=60.8
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 003217 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNA 222 (838)
Q Consensus 144 ~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~ 222 (838)
.|+.+..+.|+.-++...... ..+.+...+..|++++.. .+.|+-...+.|+.+++++
T Consensus 85 ~ll~~~~~~I~~i~l~~~~~~---------------------~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g 143 (400)
T 3p5b_L 85 YLFFTNRHEVRKMTLDRSEYT---------------------SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 143 (400)
T ss_dssp EEEEEETTEEEEECTTSCSCE---------------------EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred eeEEeccceeEEEccCCccee---------------------EeccccCcceEEeeeeccCceEEEecCCCeEEEEEccc
Confidence 444555678888887642211 011113467889999854 5666666778999999876
Q ss_pred CccCCCCCcceeEEeccccccEEEEEEec-CCCE-EEeeCCCcEEEEECCC
Q 003217 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGDL-WSGSEGGGIKIWPWEA 271 (838)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~L-~SgS~DgtIrvWd~~~ 271 (838)
.. ............-....+|++++ .+.| |+-+..+.|.+.++++
T Consensus 144 ~~----~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 144 AH----GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp --------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred CC----CCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 21 00011122222345678999998 4556 5767778888888764
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.04 E-value=1.8 Score=45.31 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=46.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeC--CC-cEEEEEC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSE--GG-GIKIWPW 269 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~--Dg-tIrvWd~ 269 (838)
....++++++|+++++-..++.|..||.++. ....+. -.+...+|+++++|+|+.+.. ++ .|..++.
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---------~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~ 102 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN---------QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 102 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC---------EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCc---------eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcC
Confidence 4667999999998888778899999998763 222221 134688999999999765543 22 3444454
Q ss_pred CC
Q 003217 270 EA 271 (838)
Q Consensus 270 ~~ 271 (838)
.+
T Consensus 103 ~~ 104 (306)
T 2p4o_A 103 SD 104 (306)
T ss_dssp TT
T ss_pred CC
Confidence 44
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=95.97 E-value=1.8 Score=50.39 Aligned_cols=85 Identities=22% Similarity=0.328 Sum_probs=53.9
Q ss_pred CCCeEEEEcC-CCCeeeEeecCCccEE--EEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCE---EEEEeCCC-
Q 003217 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV---IKMAVGAG- 509 (838)
Q Consensus 438 ~DgtIrlWD~-~g~~l~tl~~H~~~V~--sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V---~sla~dg~- 509 (838)
.+|.|.-||+ +|+.+=....+. ++. .+...|..++.|+.|+.|+.||.+ |+.+-.+....+.+ .....+|+
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q 542 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence 3688999999 788764444322 222 245568889999999999999986 88776665443322 11235776
Q ss_pred EEEEEcC-CCCeeee
Q 003217 510 YIFTLAN-HGGIRGW 523 (838)
Q Consensus 510 ~l~S~S~-DgtIrlW 523 (838)
|++..+. .+.+-+|
T Consensus 543 Yv~~~~G~gg~~~~~ 557 (582)
T 1flg_A 543 YLGVTVGYGGAVPLW 557 (582)
T ss_dssp EEEEEECCCSHHHHH
T ss_pred EEEEEccCCCccccc
Confidence 5555443 4445555
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.042 Score=57.31 Aligned_cols=106 Identities=10% Similarity=-0.011 Sum_probs=75.9
Q ss_pred EEEEEcCCCcEE-EEECCCeEEEEcC-CCCeeeEeecCCc-cEEEEEEcCCEEEEEe-eCCeEEEEeCC-Cccccccccc
Q 003217 423 EALTTSIDGMIW-TGGANGLLLQWDP-NGNRLQDFQYLPF-AVQCLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWVAH 497 (838)
Q Consensus 423 ~ala~S~dg~l~-Sgs~DgtIrlWD~-~g~~l~tl~~H~~-~V~sls~dG~~LasGs-~DgtIrlWD~~-g~~i~~l~gH 497 (838)
..|.++ +++|+ +.+.+|.|+..|+ +|+.++++ .... ---.++++|++||... .++.+.++|.+ .+.+.++..-
T Consensus 58 qGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~ 135 (268)
T 3nok_A 58 QGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS 135 (268)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS
T ss_pred ceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC
Confidence 456676 45664 5566788999999 78888877 3222 2235788888888765 58999999987 6777777643
Q ss_pred ccCEEEEEeCCCEEEEEcCCCCeeeeecCCCCCC
Q 003217 498 SSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPL 531 (838)
Q Consensus 498 ~~~V~sla~dg~~l~S~S~DgtIrlWdl~s~~~~ 531 (838)
..=+.++.|++.|+....++.|.++|..+...+
T Consensus 136 -~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~ 168 (268)
T 3nok_A 136 -GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALV 168 (268)
T ss_dssp -SCCCCEEEETTEEEEECSSSEEEEECTTTCCEE
T ss_pred -CceeEEecCCCEEEEECCCCEEEEEcCCCCeEE
Confidence 233678888988877667888999987665443
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=95.78 E-value=3.2 Score=46.16 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=43.1
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeC
Q 003217 193 SVMCMVGDEA--SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSE 260 (838)
Q Consensus 193 ~V~~la~s~d--g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~ 260 (838)
...+|+++|+ .+.||.+...+.|+.++..++ .+..+.+.-....+|+++++|.|+.+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g---------~v~~~~~~~~~P~giavd~dG~lyVad~ 200 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ---------YVDIKTTNIGQCADVNFTLNGDMVVVDD 200 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT---------EEEEECCCCSCEEEEEECTTCCEEEEEC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCC---------EEEEeecCCCCccEEEECCCCCEEEEcC
Confidence 4568999984 566777766689999999775 3444444455688999999999765543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.78 E-value=4.5 Score=48.77 Aligned_cols=77 Identities=12% Similarity=0.120 Sum_probs=48.7
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCcEEEE
Q 003217 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIW 267 (838)
Q Consensus 191 ~~~V~~la~s~d-g~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvW 267 (838)
...+..|++++. +.+.|+-...+.|+.+++.+.. ........+...-....+|++++.+. | |+-+..+.|.+.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~----~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH----GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCC----CCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence 346788999984 5566777777899999987631 00011122222334567899998774 5 677778899998
Q ss_pred ECCC
Q 003217 268 PWEA 271 (838)
Q Consensus 268 d~~~ 271 (838)
++++
T Consensus 499 ~ldG 502 (791)
T 3m0c_C 499 DTKG 502 (791)
T ss_dssp ETTS
T ss_pred eCCC
Confidence 8865
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.83 Score=53.04 Aligned_cols=74 Identities=15% Similarity=0.062 Sum_probs=48.6
Q ss_pred EEEEcCCCCEEEEEeCC----------------CcEEEEECCCCccCCCCCcceeEEec--cc--------cccEEEEEE
Q 003217 196 CMVGDEASGVVWSGHRD----------------GRIMCWKMNARLLDSDDGFGEVLSWQ--AH--------RGPVLSLCI 249 (838)
Q Consensus 196 ~la~s~dg~~LaSGs~D----------------GtIrvWd~~~g~~~~~~~~~~~~~l~--gH--------~~~V~slaf 249 (838)
.+++|++.++|+.++.+ +.|..+|..+| +.+-.++ .| ..++. +..
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG--------~~~W~~~~~~~d~~d~~~~~~p~l-~~~ 309 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG--------MAKWGYQKTPHDEWDFAGVNQMVL-TDQ 309 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC--------CEEEEEESSTTCSSCCCCCCCCEE-EEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCC--------cEEEEecCCCCcccccccCCCCEE-Eec
Confidence 46788888888887743 35899999988 4444433 22 22332 222
Q ss_pred ecCCC----EEEeeCCCcEEEEECCCcceeeec
Q 003217 250 SSYGD----LWSGSEGGGIKIWPWEAIEKALSL 278 (838)
Q Consensus 250 s~dG~----L~SgS~DgtIrvWd~~~~~~~~~~ 278 (838)
..+|+ ++.++.+|.+.+.|.++++.....
T Consensus 310 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 310 PVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp EETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence 34783 467899999999999887655443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=3.4 Score=48.12 Aligned_cols=76 Identities=21% Similarity=0.347 Sum_probs=48.9
Q ss_pred CCeEEEEcC-CCCeeeEeecCCccEE--EEEEcCCEEEEEeeCCeEEEEeCC-Cccccccccccc----CEEEEEeCCC-
Q 003217 439 NGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS----PVIKMAVGAG- 509 (838)
Q Consensus 439 DgtIrlWD~-~g~~l~tl~~H~~~V~--sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~----~V~sla~dg~- 509 (838)
+|.|.-||+ +|+.+=.... ..++. .+...|..++.|+.|+.|+.||.+ |+++-.+..... ++. ...+|+
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~-y~~~G~q 529 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMT-YTHKGTQ 529 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE-EEETTEE
T ss_pred cCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEE-EEeCCEE
Confidence 578999999 7876644432 11111 255678888899999999999987 887655543332 222 235775
Q ss_pred EEEEEcC
Q 003217 510 YIFTLAN 516 (838)
Q Consensus 510 ~l~S~S~ 516 (838)
|+++.+.
T Consensus 530 yv~~~~G 536 (599)
T 1w6s_A 530 YVAIYYG 536 (599)
T ss_dssp EEEEEEC
T ss_pred EEEEEcc
Confidence 5555444
|
| >3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A | Back alignment and structure |
|---|
Probab=95.15 E-value=0.016 Score=64.34 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=25.7
Q ss_pred eEEEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 689 RIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 689 ~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
..|+++|+||..+...-..|..+...|++.+
T Consensus 195 ~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l 225 (398)
T 3ngq_A 195 QLLIVANAHMHWDPEYSDVKLIQTMMFVSEV 225 (398)
T ss_dssp CEEEEEEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEeCcCCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999998766677888888887765
|
| >1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B | Back alignment and structure |
|---|
Probab=95.15 E-value=0.13 Score=53.28 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=26.4
Q ss_pred CCceeEEEEEEcCeEEEEEeccccCCcchHHHHHHHHHHHHHh
Q 003217 676 NKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718 (838)
Q Consensus 676 nKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~ 718 (838)
..|+++| ++.+ +.|++.||.+... .+|.+..+.|...
T Consensus 121 ~R~~l~i--~i~g--~~f~s~Hl~~~~~--~ea~~~v~~I~~~ 157 (261)
T 1sr4_B 121 SRPAVGI--RIGT--DVFFTVHALATGG--SDAVSLIRNIFTT 157 (261)
T ss_dssp CCCEEEE--EETT--EEEEEEECCTTTT--TTHHHHHHHHHHH
T ss_pred CcceEEE--EECC--eEEEEeCCCCCCC--chHHHHHHHHHHH
Confidence 7888888 4777 9999999999852 2345555566554
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.21 Score=51.38 Aligned_cols=107 Identities=14% Similarity=0.050 Sum_probs=75.0
Q ss_pred eEEEEEcCCCcEEEEECC---CeEEEEcC-CCCeeeEeecCCcc-EEEEEEcCCEEEEEe-eCCeEEEEeCC-Ccccccc
Q 003217 422 TEALTTSIDGMIWTGGAN---GLLLQWDP-NGNRLQDFQYLPFA-VQCLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGW 494 (838)
Q Consensus 422 v~ala~S~dg~l~Sgs~D---gtIrlWD~-~g~~l~tl~~H~~~-V~sls~dG~~LasGs-~DgtIrlWD~~-g~~i~~l 494 (838)
+..|.|++ ++|+.++.. ..|+..|+ +|+.++.+...... --.+++++++|+..+ .++.+.++|.+ .+++.++
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti 101 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARF 101 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEE
Confidence 44577776 677655443 38999999 79988887643322 235677888888766 58999999987 6777776
Q ss_pred cccccCEEEEEeCCCEEEEEcCCCCeeeeecCCCCC
Q 003217 495 VAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 495 ~gH~~~V~sla~dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
..... =+.++.|++.|+....++.|.++|..+...
T Consensus 102 ~~~~~-Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~ 136 (243)
T 3mbr_X 102 RYPGE-GWALTSDDSHLYMSDGTAVIRKLDPDTLQQ 136 (243)
T ss_dssp ECSSC-CCEEEECSSCEEEECSSSEEEEECTTTCCE
T ss_pred eCCCC-ceEEeeCCCEEEEECCCCeEEEEeCCCCeE
Confidence 64332 367888888776555678899988766443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.06 E-value=2.7 Score=46.68 Aligned_cols=58 Identities=9% Similarity=0.039 Sum_probs=42.1
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEee
Q 003217 193 SVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS 259 (838)
Q Consensus 193 ~V~~la~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS 259 (838)
....|++|| +++.|+.....+.|+.+|++++ .+..+.........|+|+++|+ |+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~---------~v~~~~~~~~~P~~ia~d~~G~~lyvad 197 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE---------YVSTVYSGLSKVRTICWTHEADSMIITN 197 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT---------EEEEEECCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC---------EEEEEecCCCCcceEEEeCCCCEEEEEe
Confidence 456789998 5677888777688999999874 2333333445678999999998 76444
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=94.77 E-value=2 Score=50.52 Aligned_cols=70 Identities=7% Similarity=0.127 Sum_probs=46.0
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCccCCCCCcceeEEe-ccccccEEEEEEecCCCE-EEee-C
Q 003217 196 CMVGDE-ASGVVWSGHRDG-----------RIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGDL-WSGS-E 260 (838)
Q Consensus 196 ~la~s~-dg~~LaSGs~DG-----------tIrvWd~~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~L-~SgS-~ 260 (838)
++++.+ +|++++.|+.+. .+.+||..++. +..+..+ ..|.....++++..+|+| +.|+ .
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~------w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~ 263 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI------VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND 263 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC------BCCCEEEECSCCCSSCEEEECTTSCEEEECSSS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc------EEeCcccCCCCCCccccccCCCCCCEEEeCCCC
Confidence 455566 889999988653 57899988752 2233332 223333445778889995 5776 4
Q ss_pred CCcEEEEECCC
Q 003217 261 GGGIKIWPWEA 271 (838)
Q Consensus 261 DgtIrvWd~~~ 271 (838)
+..+.+||..+
T Consensus 264 ~~~v~~yd~~t 274 (656)
T 1k3i_A 264 AKKTSLYDSSS 274 (656)
T ss_dssp TTCEEEEEGGG
T ss_pred CCceEEecCcC
Confidence 56899999865
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=94.59 E-value=0.64 Score=53.83 Aligned_cols=92 Identities=10% Similarity=0.102 Sum_probs=55.7
Q ss_pred EEEEEcCCCc-EE-EEECCCeEEEEcCC-CC------------eeeEeecCCccEE-EEEEcCCEEEEEe-eCCeEEEEe
Q 003217 423 EALTTSIDGM-IW-TGGANGLLLQWDPN-GN------------RLQDFQYLPFAVQ-CLCTFGSQIWVGY-MNGIVQVLD 485 (838)
Q Consensus 423 ~ala~S~dg~-l~-Sgs~DgtIrlWD~~-g~------------~l~tl~~H~~~V~-sls~dG~~LasGs-~DgtIrlWD 485 (838)
..+.++|||+ ++ ++-.+.+|.++|++ .+ ...+.....++-. .+.++| ++++.. .|+.|.+||
T Consensus 280 hGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwd 358 (595)
T 1fwx_A 280 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWN 358 (595)
T ss_dssp CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEE
T ss_pred eEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEE
Confidence 4588999998 33 44467889999994 32 2333333233322 344567 777765 599999999
Q ss_pred CCC-----------cccccccccccCE--EE-----EEeCCCEEEEEc
Q 003217 486 LEG-----------NLLGGWVAHSSPV--IK-----MAVGAGYIFTLA 515 (838)
Q Consensus 486 ~~g-----------~~i~~l~gH~~~V--~s-----la~dg~~l~S~S 515 (838)
.+. +.+.++..|-.+- .. +.+||++|+++-
T Consensus 359 i~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 359 IEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp HHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred hhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 642 2455555554332 11 125888888753
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.82 Score=54.90 Aligned_cols=69 Identities=10% Similarity=-0.042 Sum_probs=43.7
Q ss_pred CeEEEEEc-CCCCEEEEEe-CCC----cEEEEECCCC-ccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCC---
Q 003217 193 SVMCMVGD-EASGVVWSGH-RDG----RIMCWKMNAR-LLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG--- 261 (838)
Q Consensus 193 ~V~~la~s-~dg~~LaSGs-~DG----tIrvWd~~~g-~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D--- 261 (838)
.+...++| |||++||-+. .+| +|+++|++++ . .....+. ....+++|+|||+ |+-.+.|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~-------~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQ-------TIADKVS---GTNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTC-------CCCCCEE---EECSCCEECSSTTEEEEEEECTTC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCE-------eCCcccc---CceeeEEEecCCCEEEEEEECCCC
Confidence 57788999 9999877443 333 5999999886 3 1011111 1234688999997 6544444
Q ss_pred --CcEEEEECCC
Q 003217 262 --GGIKIWPWEA 271 (838)
Q Consensus 262 --gtIrvWd~~~ 271 (838)
..|.+|++.+
T Consensus 245 ~~~~v~~~~lgt 256 (751)
T 2xe4_A 245 RENKVWRHVMGK 256 (751)
T ss_dssp CEEEEEEEETTS
T ss_pred CCCEEEEEECCC
Confidence 2466677755
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.96 Score=54.31 Aligned_cols=102 Identities=15% Similarity=0.058 Sum_probs=58.0
Q ss_pred EEEEcCCCc-EEEEE---CCCeEEEEcCC-CC-ee--eEee-cCCccEEEEE-EcCCEEEEEee-C----CeEEEEeCCC
Q 003217 424 ALTTSIDGM-IWTGG---ANGLLLQWDPN-GN-RL--QDFQ-YLPFAVQCLC-TFGSQIWVGYM-N----GIVQVLDLEG 488 (838)
Q Consensus 424 ala~S~dg~-l~Sgs---~DgtIrlWD~~-g~-~l--~tl~-~H~~~V~sls-~dG~~LasGs~-D----gtIrlWD~~g 488 (838)
.+.+||||+ |+..+ ....|.++|++ ++ .. +.+. .......++. .+|+.|+..+. + ..|.++|+++
T Consensus 275 ~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 275 FMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred EEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 567888887 44333 23358888884 32 22 4443 3445555665 45876665553 3 2667777763
Q ss_pred -ccccc-cccccc--CEEEEEeCCCE-EEEEcCCCCeeeeec
Q 003217 489 -NLLGG-WVAHSS--PVIKMAVGAGY-IFTLANHGGIRGWNV 525 (838)
Q Consensus 489 -~~i~~-l~gH~~--~V~sla~dg~~-l~S~S~DgtIrlWdl 525 (838)
..... +..|.. .+.++.++++. +++...|+..++|-+
T Consensus 355 ~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 355 PSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp TTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEE
T ss_pred cccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEE
Confidence 33334 444544 34556666555 457777887666654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.77 E-value=8.6 Score=41.18 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=61.1
Q ss_pred eEEEEEcC-CCcE-EEEECC-CeEEEEcCCCCeeeEeec-CCccEEEEEEc--CCEEEEEee-CCeEEEEeCCCcccccc
Q 003217 422 TEALTTSI-DGMI-WTGGAN-GLLLQWDPNGNRLQDFQY-LPFAVQCLCTF--GSQIWVGYM-NGIVQVLDLEGNLLGGW 494 (838)
Q Consensus 422 v~ala~S~-dg~l-~Sgs~D-gtIrlWD~~g~~l~tl~~-H~~~V~sls~d--G~~LasGs~-DgtIrlWD~~g~~i~~l 494 (838)
...++++| +|.| |+-..+ +.|...+.+|.....+.. .-..-+.|++| +.+|+.+.. .+.|..+|+.|...+.+
T Consensus 161 P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~ 240 (349)
T 3v64_C 161 PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 240 (349)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEE
Confidence 34567776 4555 444444 678888888765555432 23345667664 667776654 67899999886543322
Q ss_pred -cccccCEEEEEeCCCEEEEEc-CCCCeeeee
Q 003217 495 -VAHSSPVIKMAVGAGYIFTLA-NHGGIRGWN 524 (838)
Q Consensus 495 -~gH~~~V~sla~dg~~l~S~S-~DgtIrlWd 524 (838)
........+|+.+...++++. ..+.|...+
T Consensus 241 ~~~~~~~P~giav~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 241 ISQGLPHPFAITVFEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp ECSSCSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred EeCCCCCceEEEEECCEEEEecCCCCeEEEEE
Confidence 222344566766666666554 445555554
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=14 Score=43.27 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=61.9
Q ss_pred EEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC
Q 003217 145 LWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNAR 223 (838)
Q Consensus 145 l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg-~~LaSGs~DGtIrvWd~~~g 223 (838)
|..+..+.|+.-|++..... ...|+ .+-..+..|+|++.+ .+.|+-..++.|..+++++.
T Consensus 9 Ll~s~~~~I~~i~l~~~~~~---------------~~~~~----~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~ 69 (628)
T 4a0p_A 9 LLFSRRADIRRISLETNNNN---------------VAIPL----TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGS 69 (628)
T ss_dssp EEEEETTEEEEEESSCTTCE---------------EECCC----CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEEeCCcEEEEECCCCCcc---------------eEEEc----CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCC
Confidence 34456678888888642211 01121 112357889999854 55667677899999998764
Q ss_pred ccCCCCCcceeEEeccccccEEEEEEecCC-CE-EEeeCCCcEEEEECCC
Q 003217 224 LLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DL-WSGSEGGGIKIWPWEA 271 (838)
Q Consensus 224 ~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L-~SgS~DgtIrvWd~~~ 271 (838)
. ....+..-......||+++.+ +| |+-+..+.|.+-++++
T Consensus 70 ~--------~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG 111 (628)
T 4a0p_A 70 A--------LEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDG 111 (628)
T ss_dssp S--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred C--------cEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCC
Confidence 1 111122112346789999765 46 6777778888888765
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.47 E-value=17 Score=43.70 Aligned_cols=103 Identities=12% Similarity=0.028 Sum_probs=62.5
Q ss_pred eEEEEEcCC-CcEE-EEECC-CeEEEEcCCCCeeeEeec-CCccEEEEEEc--CCEEEEEe-eCCeEEEEeCCCcccccc
Q 003217 422 TEALTTSID-GMIW-TGGAN-GLLLQWDPNGNRLQDFQY-LPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (838)
Q Consensus 422 v~ala~S~d-g~l~-Sgs~D-gtIrlWD~~g~~l~tl~~-H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~~l 494 (838)
...|+++|. |.|+ +-..+ +.|.+.+++|..++++.. .-...+.|++| +.+|+.+. ....|+..|+.|..+.++
T Consensus 516 P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v 595 (791)
T 3m0c_C 516 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 595 (791)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence 446677664 5554 43233 578888888866655543 23566778776 56776665 457899999987644333
Q ss_pred cc---cccCEEEEEeCCCEEEEEcC-CCCeeeee
Q 003217 495 VA---HSSPVIKMAVGAGYIFTLAN-HGGIRGWN 524 (838)
Q Consensus 495 ~g---H~~~V~sla~dg~~l~S~S~-DgtIrlWd 524 (838)
.. .-....+|+.++++|+++.. .+.|..-+
T Consensus 596 ~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 596 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp EECTTTTSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred ecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEe
Confidence 21 22345677776777776653 34555444
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=93.40 E-value=9.2 Score=40.40 Aligned_cols=105 Identities=17% Similarity=0.215 Sum_probs=63.9
Q ss_pred CCceEEEEEcCCCcEEEEECCCeEEEEcCC-CCeeeEee-c---CCccEEEEEEc-CCEEEEEeeCCeEEEEeCC-Cccc
Q 003217 419 NRRTEALTTSIDGMIWTGGANGLLLQWDPN-GNRLQDFQ-Y---LPFAVQCLCTF-GSQIWVGYMNGIVQVLDLE-GNLL 491 (838)
Q Consensus 419 ~~~v~ala~S~dg~l~Sgs~DgtIrlWD~~-g~~l~tl~-~---H~~~V~sls~d-G~~LasGs~DgtIrlWD~~-g~~i 491 (838)
...+..+++++++.++.++.+|.+.+++.. |+--+.+. . +...+.++.++ ...+++++.++.|. +... |+.-
T Consensus 204 ~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~-~S~DgG~tW 282 (327)
T 2xbg_A 204 SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALL-CSQDGGQTW 282 (327)
T ss_dssp SSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEE-EESSTTSSC
T ss_pred CCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEE-EeCCCCccc
Confidence 345677888999999988889988888533 43333222 1 23457788763 33445555677773 4333 4432
Q ss_pred cccc---ccccCEEEEEe-CCCEEEEEcCCCCeeeee
Q 003217 492 GGWV---AHSSPVIKMAV-GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 492 ~~l~---gH~~~V~sla~-dg~~l~S~S~DgtIrlWd 524 (838)
..+. .+...+.+|.+ ++..++.++.+|+|..++
T Consensus 283 ~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 283 QQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp EECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred EEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence 2222 23455677765 566788888899876655
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=93.07 E-value=10 Score=39.88 Aligned_cols=105 Identities=12% Similarity=0.060 Sum_probs=62.2
Q ss_pred eEEEEEcC-CCcE-EEEECC-CeEEEEcCCCCeeeEeec-CCccEEEEEEc--CCEEEEEe-eCCeEEEEeCCCcccccc
Q 003217 422 TEALTTSI-DGMI-WTGGAN-GLLLQWDPNGNRLQDFQY-LPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (838)
Q Consensus 422 v~ala~S~-dg~l-~Sgs~D-gtIrlWD~~g~~l~tl~~-H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~~l 494 (838)
...++++| +|.| |+.... +.|...+++|...+.+.. .-..-+.|+.| +.+|+.+. ..+.|...|..|...+.+
T Consensus 122 P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~ 201 (316)
T 1ijq_A 122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 201 (316)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEE
Confidence 34566766 4555 443333 678888887766555432 23445667664 66777666 467999999987544433
Q ss_pred cc---cccCEEEEEeCCCEEEEEc-CCCCeeeeecC
Q 003217 495 VA---HSSPVIKMAVGAGYIFTLA-NHGGIRGWNVT 526 (838)
Q Consensus 495 ~g---H~~~V~sla~dg~~l~S~S-~DgtIrlWdl~ 526 (838)
.. .-....+|+.+++.++++. ..+.|...+..
T Consensus 202 ~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 202 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp EECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred eecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCC
Confidence 21 1234566776666666554 45567666643
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=92.76 E-value=11 Score=39.68 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=40.8
Q ss_pred eEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEee---cCCccEEEEEE-cCCEEEEEeeCCeEEEEeC
Q 003217 422 TEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQ---YLPFAVQCLCT-FGSQIWVGYMNGIVQVLDL 486 (838)
Q Consensus 422 v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~---~H~~~V~sls~-dG~~LasGs~DgtIrlWD~ 486 (838)
+.++++.+++.++.++.++.| .+.. .|+--+.+. .+...+.++.+ ++..+++++.+|+|.-++-
T Consensus 252 ~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 252 FLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred eEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 456677777887777778876 4555 354433333 12345666755 4567778888998887764
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=92.66 E-value=13 Score=40.26 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=60.0
Q ss_pred eEEEEEcC-CCcE-EEEECC-CeEEEEcCCCCeeeEee-cCCccEEEEEE--cCCEEEEEe-eCCeEEEEeCCCcccccc
Q 003217 422 TEALTTSI-DGMI-WTGGAN-GLLLQWDPNGNRLQDFQ-YLPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (838)
Q Consensus 422 v~ala~S~-dg~l-~Sgs~D-gtIrlWD~~g~~l~tl~-~H~~~V~sls~--dG~~LasGs-~DgtIrlWD~~g~~i~~l 494 (838)
...++++| +|.| |+-... +.|...+..|.....+. ..-..-+.|++ ++.+|+.+. ..+.|+.+|+.|...+.+
T Consensus 204 P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (386)
T 3v65_B 204 PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 283 (386)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE
T ss_pred CcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE
Confidence 34566765 4455 444344 67888888776555543 22334566666 466776665 467899999886533322
Q ss_pred -cccccCEEEEEeCCCEEEEEc-CCCCeeeee
Q 003217 495 -VAHSSPVIKMAVGAGYIFTLA-NHGGIRGWN 524 (838)
Q Consensus 495 -~gH~~~V~sla~dg~~l~S~S-~DgtIrlWd 524 (838)
........+|+.++..++++. ..+.|...+
T Consensus 284 ~~~~~~~P~giav~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 284 ISQGLPHPFAITVFEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp ECSSCSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred EECCCCCceEEEEECCEEEEeeCCCCeEEEEE
Confidence 222334566776666666554 455666655
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=21 Score=41.63 Aligned_cols=103 Identities=10% Similarity=0.024 Sum_probs=57.8
Q ss_pred EEEEEcC-CCcEEEEE--CCCeEEEEcCCCCeeeEeecCCccEEEEEEc--CCEEEEEee-CCeEEEEeCCCcccccccc
Q 003217 423 EALTTSI-DGMIWTGG--ANGLLLQWDPNGNRLQDFQYLPFAVQCLCTF--GSQIWVGYM-NGIVQVLDLEGNLLGGWVA 496 (838)
Q Consensus 423 ~ala~S~-dg~l~Sgs--~DgtIrlWD~~g~~l~tl~~H~~~V~sls~d--G~~LasGs~-DgtIrlWD~~g~~i~~l~g 496 (838)
..|+++| .|.|+... ..+.|...+++|..++.+...-..-+.|+.| +++|+.+.. .+.|...|+.|.....+..
T Consensus 126 ~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~ 205 (628)
T 4a0p_A 126 RALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIAD 205 (628)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE
T ss_pred ccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeec
Confidence 4566665 45553332 1345666677665554444334455666664 566666553 5788888887643333433
Q ss_pred cccCEEEEEeCCCEEEEEcC-CCCeeeeec
Q 003217 497 HSSPVIKMAVGAGYIFTLAN-HGGIRGWNV 525 (838)
Q Consensus 497 H~~~V~sla~dg~~l~S~S~-DgtIrlWdl 525 (838)
......+|+.++..+++... .+.|...|.
T Consensus 206 ~l~~P~glav~~~~ly~tD~~~~~I~~~dk 235 (628)
T 4a0p_A 206 DLPHPFGLTQYQDYIYWTDWSRRSIERANK 235 (628)
T ss_dssp CCSCEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred cCCCceEEEEECCEEEEecCCCCEEEEEEC
Confidence 33445567765566665543 455655553
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=92.11 E-value=17 Score=40.21 Aligned_cols=101 Identities=12% Similarity=0.133 Sum_probs=55.4
Q ss_pred CEEEEecC-CCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCC---Cc-EEE
Q 003217 143 EQLWAGGE-NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD---GR-IMC 217 (838)
Q Consensus 143 ~~l~~g~d-~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~D---Gt-Irv 217 (838)
..||.+.. +.|+.+|.++...... .. . .....+++++++|+++++-... .. +..
T Consensus 153 g~Lyv~D~~~~I~~id~~~g~v~~~------------------~~--~-~~~P~giavd~dG~lyVad~~~~~~~~gv~~ 211 (433)
T 4hw6_A 153 DDLYWVGQRDAFRHVDFVNQYVDIK------------------TT--N-IGQCADVNFTLNGDMVVVDDQSSDTNTGIYL 211 (433)
T ss_dssp CEEEEECBTSCEEEEETTTTEEEEE------------------CC--C-CSCEEEEEECTTCCEEEEECCSCTTSEEEEE
T ss_pred CEEEEEeCCCCEEEEECCCCEEEEe------------------ec--C-CCCccEEEECCCCCEEEEcCCCCcccceEEE
Confidence 57887543 8999999865332110 00 1 3357899999999954444321 12 222
Q ss_pred EECCCCccCCCCCcceeEEeccccccEEEEEEec-CCCEEEee-CCCcEEEEECCCc
Q 003217 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGDLWSGS-EGGGIKIWPWEAI 272 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~L~SgS-~DgtIrvWd~~~~ 272 (838)
.+...+ +.....+. .-..-..++++| +|.|+.+. .++.|+.++.+++
T Consensus 212 ~~~~~~-------~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g 260 (433)
T 4hw6_A 212 FTRASG-------FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG 260 (433)
T ss_dssp ECGGGT-------TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred EECCCC-------eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence 222221 11111111 122335688999 78887554 5677888887643
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=92.09 E-value=0.39 Score=57.27 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=43.0
Q ss_pred EEEEEcCC-CcEE-EEECCCeEEEEcCCCCeeeEeecC---CccEEEEEEcCCEEE-EEeeCCeEEEEeCC-Ccccccc
Q 003217 423 EALTTSID-GMIW-TGGANGLLLQWDPNGNRLQDFQYL---PFAVQCLCTFGSQIW-VGYMNGIVQVLDLE-GNLLGGW 494 (838)
Q Consensus 423 ~ala~S~d-g~l~-Sgs~DgtIrlWD~~g~~l~tl~~H---~~~V~sls~dG~~La-sGs~DgtIrlWD~~-g~~i~~l 494 (838)
..|+++++ ++|+ +-+..+.|..+|..|...+++... ......|++++.+|+ +....+.|..+|.. |+.+..+
T Consensus 543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECC
T ss_pred cEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEe
Confidence 35778875 4564 444567899999977544444321 122335666666554 44456789888864 6555444
|
| >2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1 | Back alignment and structure |
|---|
Probab=91.78 E-value=0.48 Score=48.74 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=28.5
Q ss_pred CCceeEEEEEEcCeEEEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 676 NKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 676 nKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
....++|++ ..+.|.|.|+.|.-+ ..|.+..+.|.+.+
T Consensus 130 ~Rp~lgiri----~~~~ff~tHa~a~~g--~da~a~v~~I~~~~ 167 (262)
T 2f1n_A 130 GRPLLGIRI----GNDAFFTAHAIAMRN--NDAPALVEEVYNFF 167 (262)
T ss_dssp CCCEEEEEE----TTEEEEEEECCSSSS--CSHHHHHHHHHHHH
T ss_pred CCceEEEEE----CCEEEEEEEecCCCC--ccHHHHHHHHHHHH
Confidence 788899888 259999999999732 23666777777653
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=91.22 E-value=0.03 Score=67.36 Aligned_cols=33 Identities=6% Similarity=0.028 Sum_probs=0.0
Q ss_pred cCeEEEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 687 YDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 687 ~~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
.+..|+++|+||..+...-..|......|++.+
T Consensus 545 ~g~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l 577 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKFNDVKTFQVGVLLDHL 577 (727)
T ss_dssp ---------------------------------
T ss_pred CCceEEEEEeccccCCCCCchHHHHHHHHHHHH
Confidence 367899999999886543344555555555544
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=91.13 E-value=20 Score=39.09 Aligned_cols=106 Identities=11% Similarity=0.026 Sum_probs=63.3
Q ss_pred eEEEEEcC-CCcEE-EEEC-CCeEEEEcCCCCeeeEeec-CCccEEEEEEc--CCEEEEEe-eCCeEEEEeCCCcccccc
Q 003217 422 TEALTTSI-DGMIW-TGGA-NGLLLQWDPNGNRLQDFQY-LPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (838)
Q Consensus 422 v~ala~S~-dg~l~-Sgs~-DgtIrlWD~~g~~l~tl~~-H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~~l 494 (838)
...|+++| +|.|+ +-.. .+.|...+++|...+.+.. .-..-+.|+.| +.+|+.+. ..+.|+..|+.|...+++
T Consensus 204 P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (400)
T 3p5b_L 204 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 283 (400)
T ss_dssp EEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEE
T ss_pred cceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEE
Confidence 34566766 45553 3322 3568888887765555432 23456677765 66777765 467999999987544333
Q ss_pred c---ccccCEEEEEeCCCEEEEEc-CCCCeeeeecCC
Q 003217 495 V---AHSSPVIKMAVGAGYIFTLA-NHGGIRGWNVTS 527 (838)
Q Consensus 495 ~---gH~~~V~sla~dg~~l~S~S-~DgtIrlWdl~s 527 (838)
. +......+|+.+++.+++.. ..+.|..++..+
T Consensus 284 ~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 284 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp EECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSS
T ss_pred EeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCC
Confidence 2 12334567776666666554 556677766433
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=87.61 E-value=30 Score=36.32 Aligned_cols=105 Identities=9% Similarity=0.017 Sum_probs=59.4
Q ss_pred EEEEEcC-CCcEEEEE--CCCeEEEEcCCCCeeeEee-cCCccEEEEEEc--CCEEEEEe-eCCeEEEEeCCCccccccc
Q 003217 423 EALTTSI-DGMIWTGG--ANGLLLQWDPNGNRLQDFQ-YLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGWV 495 (838)
Q Consensus 423 ~ala~S~-dg~l~Sgs--~DgtIrlWD~~g~~l~tl~-~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~~l~ 495 (838)
..++++| +|.|+... ..+.|...+.+|...+.+. ..-..-+.|++| +.+|+.+. ..+.|+.+|..|...+.+.
T Consensus 125 ~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~ 204 (318)
T 3sov_A 125 RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV 204 (318)
T ss_dssp EEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred cEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe
Confidence 3455555 34544333 2456777777775544442 222334566654 66777665 4678999998865433332
Q ss_pred -ccccCEEEEEeCCCEEEEEc-CCCCeeeeecCC
Q 003217 496 -AHSSPVIKMAVGAGYIFTLA-NHGGIRGWNVTS 527 (838)
Q Consensus 496 -gH~~~V~sla~dg~~l~S~S-~DgtIrlWdl~s 527 (838)
+......+|+.+++.+++.. ..+.|...+..+
T Consensus 205 ~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 205 KGSLPHPFALTLFEDILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp CSCCSCEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred cCCCCCceEEEEeCCEEEEEecCCCeEEEEECCC
Confidence 23344567776666666554 456666666543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.61 E-value=31 Score=35.32 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=46.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcc--eeEEe----ccccccEEEEEEecCCC-EEEeeCCCcEE
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFG--EVLSW----QAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~--~~~~l----~gH~~~V~slafs~dG~-L~SgS~DgtIr 265 (838)
-.-.+++.+++.++++--.++.+.+.++.... ... ....+ ..+.....+|+++|.++ ||.+.+....+
T Consensus 71 D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~-----~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~ 145 (255)
T 3qqz_A 71 DLETIEYIGDNQFVISDERDYAIYVISLTPNS-----EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIE 145 (255)
T ss_dssp SEEEEEECSTTEEEEEETTTTEEEEEEECTTC-----CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEE
T ss_pred ChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC-----eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCce
Confidence 45567777777766665566778888776531 001 11111 12345678999999885 88888777777
Q ss_pred EEECC
Q 003217 266 IWPWE 270 (838)
Q Consensus 266 vWd~~ 270 (838)
||.+.
T Consensus 146 i~~~~ 150 (255)
T 3qqz_A 146 VYKVN 150 (255)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 77764
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=86.53 E-value=37 Score=36.16 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=21.8
Q ss_pred EEEEEEecCCCEEEeeCCCcEEEEE
Q 003217 244 VLSLCISSYGDLWSGSEGGGIKIWP 268 (838)
Q Consensus 244 V~slafs~dG~L~SgS~DgtIrvWd 268 (838)
-.+|+|.|||+|+.+..++.|++++
T Consensus 33 P~~ia~~pdG~l~V~e~~g~I~~i~ 57 (352)
T 2ism_A 33 PWALAFLPDGGMLIAERPGRIRLFR 57 (352)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEEE
T ss_pred ceEEEEcCCCeEEEEeCCCeEEEEE
Confidence 4589999999988888889999988
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=86.50 E-value=48 Score=37.43 Aligned_cols=61 Identities=8% Similarity=-0.015 Sum_probs=40.8
Q ss_pred CeEEEEEcC-CCCEEEEEeCC-CcEEEEECCCCccCCCCCcceeEEecc----ccccEEEEEE-------ecCCC-EEEe
Q 003217 193 SVMCMVGDE-ASGVVWSGHRD-GRIMCWKMNARLLDSDDGFGEVLSWQA----HRGPVLSLCI-------SSYGD-LWSG 258 (838)
Q Consensus 193 ~V~~la~s~-dg~~LaSGs~D-GtIrvWd~~~g~~~~~~~~~~~~~l~g----H~~~V~slaf-------s~dG~-L~Sg 258 (838)
....|+||| +.+.|+.+..+ +.|++.|+.++ .+.++.. .-.....|+| +++|. |+.+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~---------~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyva 210 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR---------MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVA 210 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT---------EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC---------EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEE
Confidence 467899998 45666666554 67888888875 3333321 2235889999 99998 7766
Q ss_pred eCCC
Q 003217 259 SEGG 262 (838)
Q Consensus 259 S~Dg 262 (838)
...+
T Consensus 211 d~~~ 214 (496)
T 3kya_A 211 IDYD 214 (496)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 5543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=86.04 E-value=34 Score=35.26 Aligned_cols=63 Identities=11% Similarity=0.089 Sum_probs=36.5
Q ss_pred EEEEEEcCCEEEEEee-CCeEEEEeCCC--cc--cccccccccCEEEEE--eCCCEEEEEcCCCCeeeeec
Q 003217 462 VQCLCTFGSQIWVGYM-NGIVQVLDLEG--NL--LGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 462 V~sls~dG~~LasGs~-DgtIrlWD~~g--~~--i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl 525 (838)
.+.|+++|++|+++.. .+.|..+|+.+ ++ ...+.. ......|+ .+|+..++....+.|.+++.
T Consensus 171 pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~ 240 (306)
T 2p4o_A 171 ANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAP 240 (306)
T ss_dssp EEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred CCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence 4456888988877664 68999999863 32 111110 01122233 45665555555677888774
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=84.33 E-value=6.5 Score=46.63 Aligned_cols=86 Identities=10% Similarity=-0.009 Sum_probs=47.3
Q ss_pred CeEEEEcCCCCeeeEeec-CCccEEEEEE--cCCEEEEEe-eCCeEEEEeCCCccccccc---ccccCEEEEEeCCCEEE
Q 003217 440 GLLLQWDPNGNRLQDFQY-LPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLEGNLLGGWV---AHSSPVIKMAVGAGYIF 512 (838)
Q Consensus 440 gtIrlWD~~g~~l~tl~~-H~~~V~sls~--dG~~LasGs-~DgtIrlWD~~g~~i~~l~---gH~~~V~sla~dg~~l~ 512 (838)
+.|.+.++.|...+.+.. .-..-+.|++ ++.+|+.+. ..+.|..+|+.|...+++. +.-....+|+.+++.|+
T Consensus 519 ~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~ly 598 (699)
T 1n7d_A 519 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVF 598 (699)
T ss_dssp CCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEE
T ss_pred CeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEE
Confidence 567777776654443321 1222345555 455555554 5679999999864333322 11122345566666766
Q ss_pred EEc-CCCCeeeeec
Q 003217 513 TLA-NHGGIRGWNV 525 (838)
Q Consensus 513 S~S-~DgtIrlWdl 525 (838)
+.. ..+.|...+.
T Consensus 599 wtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 599 WTDIINEAIFSANR 612 (699)
T ss_dssp EECSTTTCEEEEET
T ss_pred EEeCCCCeEEEEEc
Confidence 554 4567777764
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=81.82 E-value=83 Score=36.44 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=47.1
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC-CE-EEeeCCCcEEEEE
Q 003217 192 SSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DL-WSGSEGGGIKIWP 268 (838)
Q Consensus 192 ~~V~~la~s~dg~-~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L-~SgS~DgtIrvWd 268 (838)
..+..|++++.++ +.|+=...+.|..+++++.. .....+..--.....|++++.+ +| |+-+..+.|.+-+
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~-------~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~ 112 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-------SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSN 112 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC-------ceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEE
Confidence 3577899998555 55565567889999987641 1112222222467899999965 45 5777788999988
Q ss_pred CCC
Q 003217 269 WEA 271 (838)
Q Consensus 269 ~~~ 271 (838)
+++
T Consensus 113 ~dG 115 (619)
T 3s94_A 113 LDG 115 (619)
T ss_dssp TTS
T ss_pred CCC
Confidence 865
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 838 | ||||
| d1i9za_ | 345 | d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission | 2e-58 | |
| d2imqx1 | 280 | d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug ( | 2e-27 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.003 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.001 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.001 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.001 |
| >d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: Inositol polyphosphate 5-phosphatase (IPP5) domain: Synaptojanin, IPP5C domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 201 bits (511), Expect = 2e-58
Identities = 77/304 (25%), Positives = 126/304 (41%), Gaps = 47/304 (15%)
Query: 530 PLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVG-IVVVG 588
P+ + EL +E ++ +N+KI ++N+ A+ L +WL + + I VVG
Sbjct: 3 PIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSATTK-LENWLFPENTPLADIYVVG 61
Query: 589 LQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIG----KILDDGSTFERVGSRQLAGL 644
QE+ + + V A W + G + ++ S QL G
Sbjct: 62 FQEI--------VQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGT 113
Query: 645 LIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEA 704
+ ++ +++ + +V+ G G GNKGAV +R D +CF+ H AA
Sbjct: 114 ALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN 173
Query: 705 VNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADM 764
+ R+ D+ + + F R ++ D
Sbjct: 174 YDERDHDYRTIASGLRFRRGRSI--------------------------------FNHDY 201
Query: 765 VIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPT 824
V++ GDFNYR+ +TY+E I+Q +L E DQL +M G VF E I FPPT
Sbjct: 202 VVWFGDFNYRIS-LTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPT 260
Query: 825 YKFE 828
YKF+
Sbjct: 261 YKFD 264
|
| >d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: Inositol polyphosphate 5-phosphatase (IPP5) domain: Salivary nitrophorin species: Bedbug (Cimex lectularius) [TaxId: 79782]
Score = 110 bits (275), Expect = 2e-27
Identities = 41/282 (14%), Positives = 80/282 (28%), Gaps = 60/282 (21%)
Query: 551 NLKILAGTWNVGQGRASQD--ALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETV 608
L + +WN G RA + L+ D ++ V +Q
Sbjct: 4 QLSVHTVSWNSGHERAPTNLEELLGLNSGETPD--VIAVAVQGFGFQT------------ 49
Query: 609 GLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPC 668
+ G + +L + ++ + + + V+ + D +
Sbjct: 50 --DKPQQGPACVKNFQSLLTS-KGYTKLKNTITETMGLTVYCLEKHLDQ--NTLKNETII 104
Query: 669 GFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLC 728
G + +Y++ F + +D PS
Sbjct: 105 VTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKDDPS--- 161
Query: 729 SAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFIS 788
D + ++GD N R++ A+ +
Sbjct: 162 ----------------------------------DFLFWIGDLNVRVE-TNATHAKSLVD 186
Query: 789 QRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKH 830
Q D L DQL+ + + +F G E + F PTYKF+ +
Sbjct: 187 QNNIDGLMAFDQLK-KAKEQKLFDGWTEPQVTFKPTYKFKPN 227
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.3 bits (108), Expect = 1e-05
Identities = 39/308 (12%), Positives = 87/308 (28%), Gaps = 17/308 (5%)
Query: 233 EVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291
E + HR PV + + S SE IK+W +E + +LK + +
Sbjct: 9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68
Query: 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLS-----FALWDARTRELLK 346
S L S + + + + H S+ + +
Sbjct: 69 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128
Query: 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAV 406
++ ++ T I + S + + + + V
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188
Query: 407 RRVA-----AKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPN-GNRLQDFQYLPF 460
++ + + + + +G + + WD + G L
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248
Query: 461 AVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGA--GYIFTLA 515
V+ + + G I + ++V D + + AH V + Y+ T +
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 308
Query: 516 NHGGIRGW 523
++ W
Sbjct: 309 VDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 9/77 (11%)
Query: 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS 251
+ V ++ + S D + W + + + AH V SL
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC--------MKTLNAHEHFVTSLDFHK 299
Query: 252 YGD-LWSGSEGGGIKIW 267
+ +GS +K+W
Sbjct: 300 TAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.2 bits (87), Expect = 0.003
Identities = 14/94 (14%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 187 SVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLS 246
S+ + + + SG RD I W ++ + +++ H V
Sbjct: 201 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC--------LMTLVGHDNWVRG 252
Query: 247 LCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLK 279
+ S G + S ++ +++W ++ +L
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.6 bits (98), Expect = 1e-04
Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 7/76 (9%)
Query: 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS 251
+ + +V +G D I + + + AH+ V +L +
Sbjct: 216 AEKGANEEEIEEDLVATGSLDTNIFIY-------SVKRPMKIIKALNAHKDGVNNLLWET 268
Query: 252 YGDLWSGSEGGGIKIW 267
L S IK W
Sbjct: 269 PSTLVSSGADACIKRW 284
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 9/77 (11%)
Query: 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS 251
+ + ++ ++ +G+ D W D+ H V L ++
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVW-------DALKA-DRAGVLAGHDNRVSCLGVTD 322
Query: 252 YGD-LWSGSEGGGIKIW 267
G + +GS +KIW
Sbjct: 323 DGMAVATGSWDSFLKIW 339
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (94), Expect = 4e-04
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 206 VWSGHRDGRIMCWKMN-ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGI 264
+ SG DG+I W + A + G + + H G V L + + S S I
Sbjct: 231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ-IVSSSHDDTI 289
Query: 265 KIW 267
IW
Sbjct: 290 LIW 292
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 0.001
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 10/63 (15%)
Query: 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGI 264
S +D + W+ +G + VLS IS + +GS
Sbjct: 280 FVSTGKDNLLNAWRTP---------YGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKA 330
Query: 265 KIW 267
++
Sbjct: 331 TVY 333
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.5 bits (90), Expect = 0.001
Identities = 8/81 (9%), Positives = 26/81 (32%), Gaps = 7/81 (8%)
Query: 190 GVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI 249
V + C ++ + + + ++ S + + +V + H G V +
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEK------SGNKWVQVHELKEHNGQVTGVDW 59
Query: 250 SSYGD-LWSGSEGGGIKIWPW 269
+ + + + +W
Sbjct: 60 APDSNRIVTCGTDRNAYVWTL 80
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.4 bits (90), Expect = 0.001
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG 253
V+ + + + SG +D ++ W D G +L Q HR V+S+ +++
Sbjct: 311 VLSVATTQNDEYILSGSKDRGVLFW-------DKKSG-NPLLMLQGHRNSVISVAVANGS 362
Query: 254 D-------LWSGSEGGGIKIWPWEAI 272
+GS +IW ++ I
Sbjct: 363 SLGPEYNVFATGSGDCKARIWKYKKI 388
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 838 | |||
| d1i9za_ | 345 | Synaptojanin, IPP5C domain {Fission yeast (Schizos | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.98 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.98 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.96 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.95 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.95 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.95 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d2imqx1 | 280 | Salivary nitrophorin {Bedbug (Cimex lectularius) [ | 99.94 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.92 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.92 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.92 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.91 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.91 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.9 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.9 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.9 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.87 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.87 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.85 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.81 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.8 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.8 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.76 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.75 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.73 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.71 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.65 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.64 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.61 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.6 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.52 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.52 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.51 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.47 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.39 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.34 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.28 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.09 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.0 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.88 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.43 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.35 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.33 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.33 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.25 | |
| d2ddra1 | 299 | Sphingomyelin phosphodiesterase C {Bacillus cereus | 98.23 | |
| d1zwxa1 | 293 | Sphingomyelin phosphodiesterase C {Listeria ivanov | 98.2 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.69 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.53 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.48 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.48 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.47 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.43 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.39 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.23 | |
| d1wdua_ | 228 | Endonuclease domain of TRAS1 retrotransposon (ORF2 | 97.22 | |
| d1vyba_ | 236 | Endonuclease domain of LINE-1 reverse transcriptas | 97.03 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.0 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.0 | |
| d2f1na1 | 250 | Cytolethal distending toxin subunit B {Escherichia | 96.98 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.91 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 96.82 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 96.8 | |
| d2a40b1 | 260 | Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913 | 96.3 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 95.82 | |
| d1sr4b_ | 261 | Cytolethal distending toxin subunit B {Haemophilus | 95.45 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 91.7 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 91.5 | |
| d1hd7a_ | 275 | DNA repair endonuclease Hap1 {Human (Homo sapiens) | 86.87 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 84.99 | |
| d1akoa_ | 268 | DNA-repair enzyme exonuclease III {Escherichia col | 84.46 |
| >d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: Inositol polyphosphate 5-phosphatase (IPP5) domain: Synaptojanin, IPP5C domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=100.00 E-value=3.9e-54 Score=473.77 Aligned_cols=266 Identities=29% Similarity=0.498 Sum_probs=231.9
Q ss_pred CCCCchhhhhhhhccccccccccceeeEEEEEEeCCCCCCcccccccccCC-CCCceEEEEEeecc-cCccchhhhhhhh
Q 003217 528 PGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSA-ASDVGIVVVGLQEV-EMGAGFLAMSAAK 605 (838)
Q Consensus 528 ~~~~d~~~~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~~~~~l~~wl~~~-~~~~di~vig~QE~-~~~~~~~~~~~~~ 605 (838)
++|+++++.+++.+++.+|+...+++|+++|||||+.+|+ ++|.+||... ...+|||||||||+ ++..+.+.
T Consensus 1 ~d~~~~~~~~~l~~r~~~~~~~~~l~I~v~TWNv~~~~~~-~~l~~~l~~~~~~~~DI~viglQEi~~~~~~~~~----- 74 (345)
T d1i9za_ 1 YDPIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSAT-TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVI----- 74 (345)
T ss_dssp CCHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEECTTCCCC-SCCHHHHSCSSSCCCSEEEEEEECSSCCC----------
T ss_pred CCcHHHHHHHHHHHHHHhhcCCCceEEEEEEEcCCCccCC-cchHHhhccCCCCCCCEEEEEcccCCccchhhhc-----
Confidence 4678889999999999999999999999999999988874 6899999864 34589999999998 46543321
Q ss_pred hhccCCCCcchhhHHHHHhhhcC----CCCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeE
Q 003217 606 ETVGLEGSAVGHWWLDMIGKILD----DGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVG 681 (838)
Q Consensus 606 ~~~~~~~~~~~~~w~~~~~~~l~----~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~ 681 (838)
.+.+...+.|.+.+.+.++ .+..|+++.+.+|+|+.|+||+|+++.++|++|+++.+++|++|.+||||||+
T Consensus 75 ----~~~~~~~~~w~~~~~~~~~~~~~~~~~Y~~v~~~~~~g~~l~vf~r~~~~~~i~~v~~~~~~~g~~g~~gnKGaV~ 150 (345)
T d1i9za_ 75 ----SADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVA 150 (345)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHTCCSSCCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEE
T ss_pred ----ccCchhhHHHHHHHHHhccccccCCCCeEEEEEecccCcEEEEEEcchhccccccceeEEEecCcCCcccCCceEE
Confidence 1222345789999887763 35689999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCeEEEEEeccccCCcchHHHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcCc
Q 003217 682 LRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSE 761 (838)
Q Consensus 682 i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (838)
+||++++++||||||||+||++++++||+||..|+++|.|..+. .+.+
T Consensus 151 vr~~i~~t~l~fvn~HL~ag~~~~~~R~~~~~~i~~~l~~~~~~--------------------------------~~~~ 198 (345)
T d1i9za_ 151 IRFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGR--------------------------------SIFN 198 (345)
T ss_dssp EEEEETTEEEEEEEEECCCCSSCHHHHHHHHHHHHHHCCCGGGC--------------------------------CTTS
T ss_pred EEEEECCEEEEEEEecccCcccchHHHHHHHHHHHHhhcccccc--------------------------------cccc
Confidence 99999999999999999999999999999999999999876422 2467
Q ss_pred ccEEEEeccceeeecCCChHHHHHHhhhcchHHHhhccchHHHHhcCCCcCCcccCCCCCCCCCcccCCCCCccC
Q 003217 762 ADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAG 836 (838)
Q Consensus 762 ~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~ 836 (838)
+|++||+||||||++. +.+++.+++.+++++.|+++|||+.+|+.+.+|.+|.|++|+|||||||+.+++.|.-
T Consensus 199 ~d~v~~~GDlN~R~~~-~~~~~~~~i~~~~~~~l~~~dql~~~~~~~~~~~~~~E~~I~F~PTyk~~~~~~~yd~ 272 (345)
T d1i9za_ 199 HDYVVWFGDFNYRISL-TYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDT 272 (345)
T ss_dssp SSEEEEEEECCCCBSS-CHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSCBCC
T ss_pred CceeEEeccccccccC-chhhhHhhhhccchhHHHHHHHHHhhhhccCcccCcccCCCCCCCCCeEECCCCccCC
Confidence 8999999999999996 9999999999999999999999999999999999999999999999999999998854
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.8e-30 Score=271.65 Aligned_cols=284 Identities=15% Similarity=0.193 Sum_probs=202.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|+||+|+|++++|+||+.||+||+||+.++ +...++++|.++|++++++|++. +++++.++++.+|+.
T Consensus 17 ~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~--------~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (317)
T d1vyhc1 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--------DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 88 (317)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--------CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------CEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence 889999999999999999999999999999987 67788999999999999999998 689999999999998
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
........... + ...+..+...+++..+++++ ++.+++||+++++.+.++
T Consensus 89 ~~~~~~~~~~~-------------------~----------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 139 (317)
T d1vyhc1 89 QGFECIRTMHG-------------------H----------DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 139 (317)
T ss_dssp TSSCEEECCCC-------------------C----------SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ccccccccccc-------------------c----------cccceeeeccCCCceEEeeccCcceeEeecccceeeeEE
Confidence 65433222111 1 23455666677777777666 678999999999999998
Q ss_pred ecCCceEEeeecccCccccc----ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cCc---cccCC
Q 003217 349 NIDGQIENRVDMSLLPDFAM----EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGG---FGDDN 419 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~----~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~---~~~~~ 419 (838)
..+......+.+++.....+ +..++ ++.... ... ...+.++...+..+.. ... .....
T Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~~~d~~v~--~~~~~~-~~~----------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 206 (317)
T d1vyhc1 140 TGHREWVRMVRPNQDGTLIASCSNDQTVR--VWVVAT-KEC----------KAELREHRHVVECISWAPESSYSSISEAT 206 (317)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEE--EEETTT-CCE----------EEEECCCSSCEEEEEECCSCGGGGGGGCC
T ss_pred ccCCCcceeeecccCCCEEEEEeCCCeEE--EEeecc-cee----------eEEEecCCCCceEEEEeeccccceeeccc
Confidence 87766544444444322111 11111 111100 000 0011122222222211 000 00011
Q ss_pred CceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Cccccccc
Q 003217 420 RRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (838)
Q Consensus 420 ~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (838)
.........+...+++|+.|++|++||. +++++.++.+|...|.+++. +|++|++|+.||+|+|||+. ++++.++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 286 (317)
T d1vyhc1 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 286 (317)
T ss_dssp SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred cceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc
Confidence 1111111223334789999999999999 78999999999999998865 68899999999999999987 78999999
Q ss_pred ccccCEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 496 AHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 496 gH~~~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
+|.+.|++|++ ++++|+|||.|++|++||
T Consensus 287 ~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 287 AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 99999999985 678999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.98 E-value=6.8e-30 Score=275.08 Aligned_cols=263 Identities=11% Similarity=0.126 Sum_probs=205.7
Q ss_pred cCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003217 141 TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (838)
Q Consensus 141 ~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~ 220 (838)
+++.|+.+.++.|.+||+.+..... .|. .| ..+|.|++|+|+|++|+||+.||+|++||+
T Consensus 28 ~g~~l~~~~~~~v~i~~~~~~~~~~-----------------~~~--~H-~~~v~~~~~sp~g~~latg~~dg~i~iwd~ 87 (311)
T d1nr0a1 28 AGDKIQYCNGTSVYTVPVGSLTDTE-----------------IYT--EH-SHQTTVAKTSPSGYYCASGDVHGNVRIWDT 87 (311)
T ss_dssp TSSEEEEEETTEEEEEETTCSSCCE-----------------EEC--CC-SSCEEEEEECTTSSEEEEEETTSEEEEEES
T ss_pred CCCEEEEEeCCEEEEEECCCCceeE-----------------EEc--CC-CCCEEEEEEeCCCCeEeccccCceEeeeee
Confidence 4667777788899999997643221 122 23 779999999999999999999999999999
Q ss_pred CCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeC--CCcEEEEECCCcceeeecCCCceeeeEEEEeeceeec
Q 003217 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE--GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (838)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~--DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 297 (838)
.++. ......+.+|.++|.+|+|+|+|+ |++++. +..++||++++++....+.
T Consensus 88 ~~~~------~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~------------------ 143 (311)
T d1nr0a1 88 TQTT------HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT------------------ 143 (311)
T ss_dssp SSTT------CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC------------------
T ss_pred eccc------cccccccccccCcccccccccccccccccccccccccccccccccccccccc------------------
Confidence 8862 123356889999999999999998 677765 5679999998754322221
Q ss_pred ccceeccceeeeecCCeEEEEEcCCCC-EEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeE
Q 003217 298 RSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (838)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (838)
+| ...+.++++++++. .+++++ +++|++||+++++++..+.
T Consensus 144 -~h----------~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~-------------------------- 186 (311)
T d1nr0a1 144 -GQ----------ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-------------------------- 186 (311)
T ss_dssp -CC----------SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC--------------------------
T ss_pred -cc----------ccccccccccccceeeecccccccccccccccccccccccc--------------------------
Confidence 12 34577788877665 466665 6789999999877644332
Q ss_pred EEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeee
Q 003217 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQ 453 (838)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~ 453 (838)
.|...|.++.++|++. +++|+.|++|++||. +++.+.
T Consensus 187 -----------------------------------------~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~ 225 (311)
T d1nr0a1 187 -----------------------------------------EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG 225 (311)
T ss_dssp -----------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred -----------------------------------------cccccccccccCccccccccccccccccccccccccccc
Confidence 1233456788899987 789999999999999 677776
Q ss_pred Eee-------cCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccccccccc---cCEEEEEeCCCEEEEEcCCCCe
Q 003217 454 DFQ-------YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS---SPVIKMAVGAGYIFTLANHGGI 520 (838)
Q Consensus 454 tl~-------~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~---~~V~sla~dg~~l~S~S~DgtI 520 (838)
++. +|...|+++++ +|++|++|+.||+|+|||++ +++++++..|. ..+.++.++++++++++.||.|
T Consensus 226 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i 305 (311)
T d1nr0a1 226 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 305 (311)
T ss_dssp ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred cccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEE
Confidence 664 58899999876 68999999999999999987 78888887664 4677888999999999999999
Q ss_pred eeeec
Q 003217 521 RGWNV 525 (838)
Q Consensus 521 rlWdl 525 (838)
++||.
T Consensus 306 ~~wd~ 310 (311)
T d1nr0a1 306 NFVNP 310 (311)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 99995
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=6.7e-30 Score=279.23 Aligned_cols=292 Identities=18% Similarity=0.191 Sum_probs=211.1
Q ss_pred eeEEEEec--CCEEEEecCCCEEEEeCCCCccccccccccccCC-CCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe
Q 003217 134 FLRTIVCT--EEQLWAGGENGLRVWNLKELYDESESDSVSVSKS-KGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs 210 (838)
.+.+++.+ ++.|.+|+|++|+|||+.+...... .. ..... .............+ ...|.|++|+|+|++|++|+
T Consensus 64 ~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~-~~~V~~l~~s~~~~~l~s~~ 140 (388)
T d1erja_ 64 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVAR-LS-DDSAANKDPENLNTSSSPSS-DLYIRSVCFSPDGKFLATGA 140 (388)
T ss_dssp CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEE-EC-C-----------------CC-CCBEEEEEECTTSSEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCeEEEEEecccceEee-ec-ccccccccccccccccccCC-CCCEEEEEECCCCCcceecc
Confidence 46666655 4466678899999999976543321 00 00000 00000000111122 67899999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 211 ~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
.||+|++|+...+ +....+.+|...|+++++++++. +++|+.++.|++||..+.........
T Consensus 141 ~dg~v~i~~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--------- 203 (388)
T d1erja_ 141 EDRLIRIWDIENR--------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI--------- 203 (388)
T ss_dssp TTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC---------
T ss_pred ccccccccccccc--------ccccccccccccccccccccccccccccccceeeeeeecccccccccccc---------
Confidence 9999999999887 67778899999999999999987 78999999999999976432221110
Q ss_pred EeeceeecccceeccceeeeecCCeEEEE-EcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLL-SDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~la-s~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
......++ ...++..+++++ ++.|++||..++..+..+.....
T Consensus 204 ---------------------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~-------------- 248 (388)
T d1erja_ 204 ---------------------EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE-------------- 248 (388)
T ss_dssp ---------------------SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------------
T ss_pred ---------------------ccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccc--------------
Confidence 11222233 334556677665 67899999999887665421100
Q ss_pred cccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEc
Q 003217 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWD 446 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD 446 (838)
....|...|.+++++|++. |++|+.|++|++||
T Consensus 249 ----------------------------------------------~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd 282 (388)
T d1erja_ 249 ----------------------------------------------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282 (388)
T ss_dssp ------------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ----------------------------------------------cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEe
Confidence 0123455678899999987 78999999999999
Q ss_pred C-CC------------CeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe----
Q 003217 447 P-NG------------NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV---- 506 (838)
Q Consensus 447 ~-~g------------~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~---- 506 (838)
+ ++ .+......|...|.++++ +|++|++|+.||+|++||+. ++++.++.+|.+.|.+++.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~ 362 (388)
T d1erja_ 283 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 362 (388)
T ss_dssp C---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSC
T ss_pred ccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCc
Confidence 8 33 234556678999999876 68999999999999999987 8899999999999999863
Q ss_pred ----CCCEEEEEcCCCCeeeeecC
Q 003217 507 ----GAGYIFTLANHGGIRGWNVT 526 (838)
Q Consensus 507 ----dg~~l~S~S~DgtIrlWdl~ 526 (838)
++++|+|||.||+||+|+++
T Consensus 363 ~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 363 SLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp TTCTTCEEEEEEETTSEEEEEEEE
T ss_pred ccCCCCCEEEEEeCCCEEEEEeee
Confidence 67799999999999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.1e-29 Score=271.35 Aligned_cols=273 Identities=14% Similarity=0.187 Sum_probs=209.1
Q ss_pred eeEEEEec--CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 134 FLRTIVCT--EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
.+.+++.+ +..|.+++|+.|+|||+.+...... ...+....| .++|.|++|+|+|++|++|+.
T Consensus 53 ~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~--------------~~~~~~~~h-~~~I~~v~~s~dg~~l~s~~~ 117 (337)
T d1gxra_ 53 VVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSP--------------VSQLDCLNR-DNYIRSCKLLPDGCTLIVGGE 117 (337)
T ss_dssp CCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSC--------------SEEEECSCT-TSBEEEEEECTTSSEEEEEES
T ss_pred cEEEEEECCCCCEEEEEECCEEEEEEccCCcccce--------------eEEeeecCC-CCcEEEEEEcCCCCEEEEeec
Confidence 45556655 4477778899999999976432211 000111123 778999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
||+|++||+.... .+....+.+|...|.+++|+|++. +++++.|+.|++|++.+.+......
T Consensus 118 dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~----------- 180 (337)
T d1gxra_ 118 ASTLSIWDLAAPT------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ----------- 180 (337)
T ss_dssp SSEEEEEECCCC--------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----------
T ss_pred ccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccccccccc-----------
Confidence 9999999987642 144566889999999999999998 7899999999999997654322111
Q ss_pred eeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccc
Q 003217 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (838)
.+ ...+.++++++.+..+++++ ++.+++||+++++.++.+..
T Consensus 181 --------~~----------~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~------------------- 223 (337)
T d1gxra_ 181 --------GH----------TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF------------------- 223 (337)
T ss_dssp --------CC----------SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-------------------
T ss_pred --------cc----------ccccccccccccccccccccccccccccccccceeeccccc-------------------
Confidence 11 44677888888888777776 67899999999887654421
Q ss_pred cceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCC
Q 003217 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN 448 (838)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~ 448 (838)
...|.+++++|++. +++|+.|+.|++||++
T Consensus 224 -------------------------------------------------~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~ 254 (337)
T d1gxra_ 224 -------------------------------------------------TSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp -------------------------------------------------SSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred -------------------------------------------------ccceEEEEEcccccccceecccccccccccc
Confidence 12245677888876 7899999999999995
Q ss_pred CCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeee
Q 003217 449 GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGW 523 (838)
Q Consensus 449 g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlW 523 (838)
.........|...|+++++ +|++|++|+.||+|++||+. ++++..+ .|.+.|+++++ ++++|+|+|.|++|++|
T Consensus 255 ~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vW 333 (337)
T d1gxra_ 255 KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp SSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred ccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 4444456789999999875 78899999999999999987 6666554 58899999885 68899999999999999
Q ss_pred ec
Q 003217 524 NV 525 (838)
Q Consensus 524 dl 525 (838)
|+
T Consensus 334 dl 335 (337)
T d1gxra_ 334 EV 335 (337)
T ss_dssp EE
T ss_pred EE
Confidence 96
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=1.6e-28 Score=259.23 Aligned_cols=266 Identities=15% Similarity=0.168 Sum_probs=195.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-ccccccEEEEEEecCCCEEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (838)
.++|.||+|+|+|++|+||+.||+|++||+.++ +....+ .+|.++|++|+|+|+|++++++.|+++++|+.
T Consensus 12 ~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~--------~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~ 83 (299)
T d1nr0a2 12 NKAITALSSSADGKTLFSADAEGHINSWDISTG--------ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPA 83 (299)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------CEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECS
T ss_pred CCCcEEEEECCCCCEEEEEcCCCeEEEEECCCC--------cEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEecc
Confidence 889999999999999999999999999999987 455555 57999999999999999999999999999998
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEe
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~ 349 (838)
...... .. ... .......+..++.++++..+.++.++.+++|+... ......
T Consensus 84 ~~~~~~-~~---~~~----------------------~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~~ 135 (299)
T d1nr0a2 84 GGSGVD-SS---KAV----------------------ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVPI 135 (299)
T ss_dssp SSSSSC-TT---SCC----------------------EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEEEEC
T ss_pred CCcccc-cc---ccc----------------------ccccccccccccccccccccccccccccccccccc--cccccc
Confidence 542210 00 000 00113456777888888888888888999998542 222211
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC-----ccccCCCce
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG-----GFGDDNRRT 422 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g-----~~~~~~~~v 422 (838)
.+. ...+.+.+++..+++|..++..+++. .+ ....|...|
T Consensus 136 ~~~---------------------------------~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i 182 (299)
T d1nr0a2 136 SYN---------------------------------SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182 (299)
T ss_dssp SSC---------------------------------EEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCE
T ss_pred ccc---------------------------------cccccccccccccccccccccccccccccccccccccccccccc
Confidence 110 01123334444455666666555543 11 123467789
Q ss_pred EEEEEcCCCc-EEEEECCCeEEEEcC-CCCe---eeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Cc--ccc
Q 003217 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNR---LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GN--LLG 492 (838)
Q Consensus 423 ~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~---l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~--~i~ 492 (838)
.+++++|++. +++|+.|+.|++||+ ++.. +..+.+|..+|+++++ +|++|++|+.||+|+|||++ ++ .+.
T Consensus 183 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~ 262 (299)
T d1nr0a2 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII 262 (299)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEE
Confidence 9999999987 789999999999999 5544 3556789999999865 78899999999999999987 33 233
Q ss_pred cccc-cccCEEEEE-eCCCEEEEEcCCCCeeeeec
Q 003217 493 GWVA-HSSPVIKMA-VGAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 493 ~l~g-H~~~V~sla-~dg~~l~S~S~DgtIrlWdl 525 (838)
...+ |...|.++. .++++|+|+|.|++||+||+
T Consensus 263 ~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 263 IKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297 (299)
T ss_dssp ETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred EecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEec
Confidence 3334 456677776 47889999999999999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=6.7e-28 Score=256.25 Aligned_cols=270 Identities=18% Similarity=0.211 Sum_probs=195.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.++|+||+|+|++++|+||+.||+|++||+.++ +....+.+|..+|++++|+|+|. +++|+.|+++++|+.
T Consensus 55 ~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~--------~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~ 126 (340)
T d1tbga_ 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT--------NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTT--------EEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred CCCEEEEEECCCCCEEEEEECCCceeeeecccc--------eeEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence 889999999999999999999999999999987 67788999999999999999998 789999999999998
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEe
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~ 349 (838)
........ ... .+.++ ...............+....+.+...|+..+........
T Consensus 127 ~~~~~~~~------~~~---------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (340)
T d1tbga_ 127 KTREGNVR------VSR---------ELAGH----------TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp SSSCSCCC------EEE---------EECCC----------SSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEE
T ss_pred cccccccc------cce---------ecccc----------ccccccccccccccccccccccccccccccccccccccc
Confidence 65321110 000 00111 111222222222333334445677777776655544332
Q ss_pred cCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--c----CccccCCCceE
Q 003217 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNRRTE 423 (838)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~~v~ 423 (838)
....... ...+.+.....+.|..++..+++. . ..+..|...|.
T Consensus 182 ~~~~~~~-------------------------------~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~ 230 (340)
T d1tbga_ 182 GHTGDVM-------------------------------SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN 230 (340)
T ss_dssp CCSSCEE-------------------------------EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEE
T ss_pred ccceeEe-------------------------------eeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeE
Confidence 2221110 011112222334555566555553 1 23456788899
Q ss_pred EEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEee--cCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccccccc
Q 003217 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ--YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (838)
Q Consensus 424 ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~--~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~g 496 (838)
+++++|++. +++|+.|++|++||. ..+.+..+. .|...|.++++ +|++|++|+.||+|++||+. ++++.++.+
T Consensus 231 ~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 310 (340)
T d1tbga_ 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcC
Confidence 999999987 789999999999999 566666554 56678988865 68899999999999999986 789999999
Q ss_pred cccCEEEEEe--CCCEEEEEcCCCCeeeee
Q 003217 497 HSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 497 H~~~V~sla~--dg~~l~S~S~DgtIrlWd 524 (838)
|.+.|++|++ ++++|+|||.||+|++||
T Consensus 311 H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 9999999985 778999999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=6.5e-28 Score=256.68 Aligned_cols=293 Identities=12% Similarity=0.096 Sum_probs=191.5
Q ss_pred CCC-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEEC
Q 003217 191 VSS-VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~-V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (838)
... +.|+.++ +++|+||+.||+|++||+.++ +.+.++++|.++|++|+|+|++.|+||+.|++|++|++
T Consensus 12 ~~~vitc~~~~--~~~l~tgs~Dg~i~vWd~~~~--------~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 12 MTSVITCLQFE--DNYVITGADDKMIRVYDSINK--------KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI 81 (355)
T ss_dssp SSSCEEEEEEE--TTEEEEEETTTEEEEEETTTT--------EEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEET
T ss_pred CCCcEEEEEEC--CCEEEEEeCCCeEEEEECCCC--------cEEEEEECCCCCEEEEEEcCCCEEEEEecccccccccc
Confidence 555 4787775 689999999999999999987 77889999999999999999888999999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
............... .........+++..+++++ +++|++||+.++..+...
T Consensus 82 ~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~ 134 (355)
T d1nexb2 82 KKGCCTHVFEGHNST---------------------------VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 134 (355)
T ss_dssp TTTEEEEEECCCSSC---------------------------EEEEEEEEETTEEEEEEEETTSEEEEEECCC-------
T ss_pred ccccccccccccccc---------------------------ccccccccccccceeeeecCCCcEEEEEccCCceeccc
Confidence 764433222111000 0112223333444455544 678999999987765443
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--cC----ccccCCCce
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRT 422 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v 422 (838)
......... ......... ........ ... .....+.+...+.+..++..+++. .+ .+..+...+
T Consensus 135 ~~~~~~~~~-~~~~~~~~~-----~~~~~~~~--~~~--v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 204 (355)
T d1nexb2 135 GEEHDYPLV-FHTPEENPY-----FVGVLRGH--MAS--VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI 204 (355)
T ss_dssp ----CCCEE-ESCTTTCTT-----EEEEEECC--SSC--EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred cccceeccc-eeccccccc-----eeeeeeec--ccc--ccccccccceeeeecccceeeeeecccccceeeeecccccc
Confidence 221111000 000000000 00000000 000 112223344555666666555543 11 223455677
Q ss_pred EEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCCCcccccccccccC
Q 003217 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSP 500 (838)
Q Consensus 423 ~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~ 500 (838)
.++.+++++. +++++.|++|++||. ++.++..+.+|...|.++++++++|++|+.||+|++||++.. ...+.+|...
T Consensus 205 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~ 283 (355)
T d1nexb2 205 YSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDY-SRKFSYHHTN 283 (355)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTC-CEEEEEECTT
T ss_pred ccccccccceeeecccccceEEeeeccccccccccccccccccccccccceeeeeeccccccccccccc-ceecccccCC
Confidence 7888998877 789999999999999 789999999999999999999999999999999999998732 3456677777
Q ss_pred EEEEE---eCCCEEEEEcCCCCeeeeecCCCCCCc
Q 003217 501 VIKMA---VGAGYIFTLANHGGIRGWNVTSPGPLD 532 (838)
Q Consensus 501 V~sla---~dg~~l~S~S~DgtIrlWdl~s~~~~d 532 (838)
+.++. .+++.++++ .|++|++||+++...+.
T Consensus 284 ~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~ 317 (355)
T d1nexb2 284 LSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVH 317 (355)
T ss_dssp CCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCC
T ss_pred ceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence 76543 466666655 58999999998765543
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=6.3e-27 Score=241.89 Aligned_cols=258 Identities=21% Similarity=0.257 Sum_probs=182.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
...|+|+.+ +|++|+||+.||+||+||+.++ +...++++|+++|++|+| +++ |+|||.|++|++|++
T Consensus 15 ~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~--------~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~ 82 (293)
T d1p22a2 15 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL--------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 82 (293)
T ss_dssp CCCEEEEEC--CSSEEEEEESSSCEEEEESSSC--------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred CCCEEEEEE--cCCEEEEEeCCCeEEEEECCCC--------cEEEEEecCCCCEeeeec--ccceeeccccccccccccc
Confidence 668999865 6899999999999999999987 678899999999999987 455 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEE---
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLK--- 346 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~--- 346 (838)
..+.......... ..........+..+....++.+.+||..+.....
T Consensus 83 ~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (293)
T d1p22a2 83 NTGEMLNTLIHHC------------------------------EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 132 (293)
T ss_dssp SSCCEEEEECCCC------------------------------SCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEE
T ss_pred ccccccccccccc------------------------------cccccccccccceeecccccceeEeeccccccccccc
Confidence 7654332221110 0111112222223333446789999998765322
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc--C----ccccCCC
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--G----GFGDDNR 420 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g----~~~~~~~ 420 (838)
.+..+........ +. ......++.++..+++.. + .+..+..
T Consensus 133 ~~~~~~~~v~~~~-------------------------------~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~ 179 (293)
T d1p22a2 133 VLVGHRAAVNVVD-------------------------------FD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 179 (293)
T ss_dssp EECCCSSCEEEEE-------------------------------EE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred cccccccccccce-------------------------------ec--ccccccccCCCceeeecCCCCcEEEEEccccc
Confidence 2222211111000 00 111223333443333321 1 1233455
Q ss_pred ceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC----------Cc
Q 003217 421 RTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE----------GN 489 (838)
Q Consensus 421 ~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~----------g~ 489 (838)
.+..+.+++ ..+++++.|++|++||+ +++++..+.+|...|.+++.++.+|++|+.||+|++||+. ..
T Consensus 180 ~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 258 (293)
T d1p22a2 180 GIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 258 (293)
T ss_dssp CEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTT
T ss_pred ccccccCCC-CeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCce
Confidence 566666543 36899999999999999 7889999999999999999999999999999999999953 13
Q ss_pred ccccccccccCEEEEEeCCCEEEEEcCCCCeeeee
Q 003217 490 LLGGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWN 524 (838)
Q Consensus 490 ~i~~l~gH~~~V~sla~dg~~l~S~S~DgtIrlWd 524 (838)
++.++.+|.+.|++|++++++|+|+|.|++||+||
T Consensus 259 ~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 259 CLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred eeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence 57889999999999999999999999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.3e-26 Score=245.21 Aligned_cols=73 Identities=22% Similarity=0.262 Sum_probs=63.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (838)
.++|.+ +++++|++|+||+.||+||+||+.++ +.+.++.+|.++|++++|+++ .|+|||.|+++++|+..
T Consensus 16 ~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~--------~~~~~~~~h~~~V~~v~~~~~-~l~s~s~D~~~~~~~~~ 85 (342)
T d2ovrb2 16 DDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG--------KCLRTLVGHTGGVWSSQMRDN-IIISGSTDRTLKVWNAE 85 (342)
T ss_dssp TTSCEE-EEEEETTEEEEEETTSCEEEEETTTC--------CEEEECCCCSSCEEEEEEETT-EEEEEETTSCEEEEETT
T ss_pred CCceEE-EEEECCCEEEEEeCCCeEEEEECCCC--------CEEEEEeCCCCCEEEEEeCCC-ccccceecccccccccc
Confidence 777754 24556899999999999999999987 678899999999999999974 68999999999999986
Q ss_pred Ccc
Q 003217 271 AIE 273 (838)
Q Consensus 271 ~~~ 273 (838)
...
T Consensus 86 ~~~ 88 (342)
T d2ovrb2 86 TGE 88 (342)
T ss_dssp TTE
T ss_pred ccc
Confidence 643
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=3.9e-27 Score=258.61 Aligned_cols=272 Identities=12% Similarity=0.107 Sum_probs=192.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
..||.|++|+|+|++||+|+.||.|++||.+++. +..+..|+||.++|++|+|+|+|+ |+|||.|++|+|||+
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~------~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~ 80 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 80 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE------EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC------EEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEee
Confidence 4689999999999999999999999999998752 245677899999999999999998 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
.+........ +..+ ...+.++.+++++..+++++ +++|++|+.........+
T Consensus 81 ~~~~~~~~~~-----------------~~~~----------~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~ 133 (371)
T d1k8kc_ 81 KGRTWKPTLV-----------------ILRI----------NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC 133 (371)
T ss_dssp ETTEEEEEEE-----------------CCCC----------SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred cccccccccc-----------------cccc----------cccccccccccccccceeecccCcceeeeeecccccccc
Confidence 6533211110 0011 44678888888888888776 678999998765432221
Q ss_pred ----ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc------------
Q 003217 349 ----NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------------ 412 (838)
Q Consensus 349 ----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~------------ 412 (838)
..+...+.. +.|.+++...++|+.++..+++..
T Consensus 134 ~~~~~~~~~~v~~-------------------------------v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~ 182 (371)
T d1k8kc_ 134 KHIKKPIRSTVLS-------------------------------LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 182 (371)
T ss_dssp EEECTTCCSCEEE-------------------------------EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCB
T ss_pred ccccccccccccc-------------------------------ccccccccceeccccCcEEEEEeeccCccccccccc
Confidence 122222222 333333333344444444333320
Q ss_pred --------C----ccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEe
Q 003217 413 --------G----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGY 476 (838)
Q Consensus 413 --------g----~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs 476 (838)
+ ....|...|.+++|+|+|. |++++.|++|++||+ +++++.++.+|..+|.++++ +|++|++|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~ 262 (371)
T d1k8kc_ 183 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH 262 (371)
T ss_dssp TTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET
T ss_pred cccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc
Confidence 0 1234566789999999987 789999999999999 78999999999999998864 677777654
Q ss_pred eCCeEEEEeC--C-Ccc--c-------------------------------------ccccccccCEEEEEe--CC----
Q 003217 477 MNGIVQVLDL--E-GNL--L-------------------------------------GGWVAHSSPVIKMAV--GA---- 508 (838)
Q Consensus 477 ~DgtIrlWD~--~-g~~--i-------------------------------------~~l~gH~~~V~sla~--dg---- 508 (838)
|+.+++|+. . +.+ . .....|.+.|.+|++ .+
T Consensus 263 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~ 341 (371)
T d1k8kc_ 263 -DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC 341 (371)
T ss_dssp -TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSC
T ss_pred -CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcce
Confidence 777777642 1 110 0 011249999999874 21
Q ss_pred CEEEEEcCCCCeeeeecCC
Q 003217 509 GYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 509 ~~l~S~S~DgtIrlWdl~s 527 (838)
..++|+|.||+||+||+.+
T Consensus 342 ~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 342 SQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp SEEEEEETTSEEEEEEHHH
T ss_pred EEEEEEcCCCeEEEEeCCc
Confidence 3688999999999999743
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=9.5e-26 Score=235.28 Aligned_cols=298 Identities=14% Similarity=0.168 Sum_probs=217.6
Q ss_pred CCCCCceeecCCCCCccccCceeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeec
Q 003217 113 PARPPSLEVKPHPLRETQIGCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK 189 (838)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 189 (838)
|..|+...++.|- ..+.+|+.+ ++.|.+ +.|++|||||+.+...... + ..|
T Consensus 5 p~~~~~~~L~GH~-------~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~-----------------~--~~h 58 (317)
T d1vyhc1 5 PRPPEKYALSGHR-------SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT-----------------L--KGH 58 (317)
T ss_dssp CCSSCSCEEECCS-------SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE-----------------E--CCC
T ss_pred CCCCccEEEcCCC-------CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEE-----------------E--eCC
Confidence 4444444555552 356777765 445665 5699999999976543211 2 123
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 190 GVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 190 g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
..+|.+++++|++.+++++..++++..|+.... +....+.+|...+.++.|++++. +++++.|+.+++||
T Consensus 59 -~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 129 (317)
T d1vyhc1 59 -TDSVQDISFDHSGKLLASCSADMTIKLWDFQGF--------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129 (317)
T ss_dssp -SSCEEEEEECTTSSEEEEEETTSCCCEEETTSS--------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred -CCcEEEEeeeccccccccccccccccccccccc--------ccccccccccccceeeeccCCCceEEeeccCcceeEee
Confidence 779999999999999999999999999998875 56677889999999999999998 78999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
+.++.....+. ++ ...+.+++..+++..+++++ ++.|++||..+++++..
T Consensus 130 ~~~~~~~~~~~-------------------~~----------~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~ 180 (317)
T d1vyhc1 130 VQTGYCVKTFT-------------------GH----------REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE 180 (317)
T ss_dssp TTTCCEEEEEE-------------------CC----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred cccceeeeEEc-------------------cC----------CCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEE
Confidence 97654322221 11 34567778888888888776 67899999999999988
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--c----CccccCCCc
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNRR 421 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~~ 421 (838)
+..+......+.+++.......... ...........+.....+..++..+++. . ..+..|...
T Consensus 181 ~~~~~~~i~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~ 249 (317)
T d1vyhc1 181 LREHRHVVECISWAPESSYSSISEA-----------TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249 (317)
T ss_dssp ECCCSSCEEEEEECCSCGGGGGGGC-----------CSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred EecCCCCceEEEEeeccccceeecc-----------ccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCC
Confidence 8877665555555443222110000 0000011122233445677777666654 1 234567888
Q ss_pred eEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEe
Q 003217 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (838)
|.+++++|++. |++|+.||+|++||+ ++++++++.+|...|+++++ +|++|++|+.||+|+|||
T Consensus 250 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 99999999987 889999999999999 78999999999999999876 688999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.9e-26 Score=249.25 Aligned_cols=242 Identities=19% Similarity=0.280 Sum_probs=187.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEE
Q 003217 190 GVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (838)
Q Consensus 190 g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (838)
|..+|.|++|+|+|++|+||+ ||+|++||+.++. ...........+|.++|++|+|+|||+ |++|+.|++|++||
T Consensus 50 H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~---~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd 125 (337)
T d1gxra_ 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG---NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT---CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCc---ccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccc
Confidence 378999999999999999998 8999999998752 111122334578999999999999998 78999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~ 347 (838)
+......... .+..+ ...+..++.++++..+++++ +..|++||+.++++...
T Consensus 126 ~~~~~~~~~~-----------------~~~~~----------~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~ 178 (337)
T d1gxra_ 126 LAAPTPRIKA-----------------ELTSS----------APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ 178 (337)
T ss_dssp CCCC--EEEE-----------------EEECS----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cccccccccc-----------------ccccc----------cccccccccccccccccccccccccccccccccccccc
Confidence 8653221110 00111 34566777777888887766 57899999998876443
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEE
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~ 427 (838)
... +...+.++++
T Consensus 179 ~~~-------------------------------------------------------------------~~~~v~~l~~ 191 (337)
T d1gxra_ 179 FQG-------------------------------------------------------------------HTDGASCIDI 191 (337)
T ss_dssp ECC-------------------------------------------------------------------CSSCEEEEEE
T ss_pred ccc-------------------------------------------------------------------cccccccccc
Confidence 221 2233556778
Q ss_pred cCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCCCcccccccccccCEEE
Q 003217 428 SIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIK 503 (838)
Q Consensus 428 S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~s 503 (838)
++++. +++|+.|++|++||+ ++++++.+ .|...|+++++ ++++|++|+.|+.|++||++........+|.+.|.+
T Consensus 192 s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~ 270 (337)
T d1gxra_ 192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS 270 (337)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEE
T ss_pred cccccccccccccccccccccccceeeccc-ccccceEEEEEcccccccceeccccccccccccccccccccccccccce
Confidence 88876 789999999999999 68887776 47889999876 578999999999999999985555567899999999
Q ss_pred EEe--CCCEEEEEcCCCCeeeeecCCCCC
Q 003217 504 MAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 504 la~--dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
+++ ++++++|++.|++|++||+....+
T Consensus 271 v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~ 299 (337)
T d1gxra_ 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCE
Confidence 985 788999999999999999876443
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=8.6e-26 Score=240.06 Aligned_cols=330 Identities=12% Similarity=0.145 Sum_probs=206.3
Q ss_pred CCceeecCCCCCccccCceeEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCe
Q 003217 116 PPSLEVKPHPLRETQIGCFLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSV 194 (838)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V 194 (838)
|...+++.|. ..-+.+++.+++.|++ +.|++|+|||+.+...... + ..| .++|
T Consensus 3 p~~~tL~GH~------~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~-----------------l--~~H-~~~V 56 (355)
T d1nexb2 3 PQRTTLRGHM------TSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQ-----------------L--SGH-DGGV 56 (355)
T ss_dssp CEEEEEECCS------SSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEE-----------------E--ECC-SSCE
T ss_pred CCcEEECCcC------CCcEEEEEECCCEEEEEeCCCeEEEEECCCCcEEEE-----------------E--ECC-CCCE
Confidence 3445566663 1224456778888887 4689999999976543321 2 234 7899
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec--cccccEEEEEEecCCC-EEEeeCCCcEEEEECCC
Q 003217 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (838)
Q Consensus 195 ~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~--gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~ 271 (838)
.||+|+|+ ++|+||+.||+|++|+.... ....... .+...+..+.+++++. +++++.|++|++|++.+
T Consensus 57 ~~l~~s~~-~~l~s~s~D~~i~iw~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~ 127 (355)
T d1nexb2 57 WALKYAHG-GILVSGSTDRTVRVWDIKKG--------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 127 (355)
T ss_dssp EEEEEETT-TEEEEEETTCCEEEEETTTT--------EEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC
T ss_pred EEEEEcCC-CEEEEEeccccccccccccc--------ccccccccccccccccccccccccceeeeecCCCcEEEEEccC
Confidence 99999985 68999999999999999886 3333333 3345566677888887 78999999999999976
Q ss_pred cceeeecCCCceeeeEEEEeeceeecccceeccce--eeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEE
Q 003217 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF--SSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (838)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~--~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l 348 (838)
................. .......... .......+... ...+..++.+. +..|++||+.+++.+..+
T Consensus 128 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 197 (355)
T d1nexb2 128 ESSVPDHGEEHDYPLVF--------HTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL 197 (355)
T ss_dssp -----------CCCEEE--------SCTTTCTTEEEEEECCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred Cceeccccccceeccce--------eccccccceeeeeeecccccccc--ccccceeeeecccceeeeeecccccceeee
Confidence 43221111000000000 0000000000 00011222222 22345555544 678999999999887776
Q ss_pred ecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec--c----CccccCCCce
Q 003217 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNRRT 422 (838)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~~v 422 (838)
..+...... ..+.+.+.....+..++..+++. . ..+..|...|
T Consensus 198 ~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v 246 (355)
T d1nexb2 198 SGHTDRIYS-------------------------------TIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 246 (355)
T ss_dssp CCCSSCEEE-------------------------------EEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCC
T ss_pred ecccccccc-------------------------------ccccccceeeecccccceEEeeeccccccccccccccccc
Confidence 544332111 12223333444555555444443 1 1344577788
Q ss_pred EEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEE---EEcCCEEEEEeeCCeEEEEeCC-Ccccc-cccc
Q 003217 423 EALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL---CTFGSQIWVGYMNGIVQVLDLE-GNLLG-GWVA 496 (838)
Q Consensus 423 ~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sl---s~dG~~LasGs~DgtIrlWD~~-g~~i~-~l~g 496 (838)
.++++++ ..|++|+.||+|++||+ ++.+ .+..|...+.++ .+++.+|++| .|++|+|||++ |+++. .+.+
T Consensus 247 ~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~ 322 (355)
T d1nexb2 247 GLLRLSD-KFLVSAAADGSIRGWDANDYSR--KFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILK 322 (355)
T ss_dssp CEEEECS-SEEEEECTTSEEEEEETTTCCE--EEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTT
T ss_pred ccccccc-ceeeeeecccccccccccccce--ecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecC
Confidence 8888875 46899999999999999 4543 455566655543 4566666665 59999999987 78774 6789
Q ss_pred cccCEEEEEeCCCE-EEEEcCCCCeeeeec
Q 003217 497 HSSPVIKMAVGAGY-IFTLANHGGIRGWNV 525 (838)
Q Consensus 497 H~~~V~sla~dg~~-l~S~S~DgtIrlWdl 525 (838)
|.+.|++++++++. +++++.||++++|.+
T Consensus 323 ~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 323 DADQIWSVNFKGKTLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp TCSEEEEEEEETTEEEEEEESSSCEEEEEE
T ss_pred CCCCEEEEEEcCCeEEEEEECCCcEEEEEE
Confidence 99999999987765 557889999777654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=7.8e-27 Score=244.92 Aligned_cols=248 Identities=15% Similarity=0.148 Sum_probs=185.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (838)
..+|.||+|+| |+||+.||+|++||+.++ .++|++.|.++++++++.++|+|.|++||+|+..
T Consensus 13 ~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-------------~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~ 75 (287)
T d1pgua2 13 NKGITALTVNP----LISGSYDGRIMEWSSSSM-------------HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGIT 75 (287)
T ss_dssp SSCEEEEETTT----TEEEETTSCEEETTTTEE-------------ECCCCSCEEEEECCSTTCCEEEETTTEEEETTEE
T ss_pred CCceEEEEECc----EEEEeCCCeEEEEECCCC-------------CCCCCCCEEEEEecCCCeEEEEeecccccccccc
Confidence 88999999987 999999999999998764 2589999999999998889999999999999974
Q ss_pred CcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEec
Q 003217 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (838)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~ 350 (838)
..+ + ......++..+++..+.++.++.+.+|+..+++.++.+..
T Consensus 76 ~~~----~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (287)
T d1pgua2 76 KHE----F--------------------------------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL 119 (287)
T ss_dssp EEE----C--------------------------------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred ccc----c--------------------------------ccceeeeeeccCCceEEEeecccceeeeccceeeeeeccc
Confidence 311 0 1134455556666667777778899999999998887764
Q ss_pred CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCC-cEEEEec-c-----C-ccccCCCce
Q 003217 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAA-K-----G-GFGDDNRRT 422 (838)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~-~v~~v~~-~-----g-~~~~~~~~v 422 (838)
+.... .+ .+.+...+++..+ ...+++. . . ....+...+
T Consensus 120 ~~~~~---~~-------------------------------~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v 165 (287)
T d1pgua2 120 NSPGS---AV-------------------------------SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP 165 (287)
T ss_dssp SSCEE---EE-------------------------------EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCE
T ss_pred cceee---ee-------------------------------eccCcceeeeccccceeeeeeccccceeeeeeeccCCce
Confidence 43221 01 1111112222222 2222221 0 0 112355678
Q ss_pred EEEEEcCCCc-EEEEECCCeEEEEcC-CCCee-eEeecCCccEEEEEE------------cCCEEEEEeeCCeEEEEeCC
Q 003217 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRL-QDFQYLPFAVQCLCT------------FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 423 ~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l-~tl~~H~~~V~sls~------------dG~~LasGs~DgtIrlWD~~ 487 (838)
.+++++|++. |++|+.||.|++||+ +++.+ ..+.+|..+|+++++ ++.+|++|+.|++|+|||++
T Consensus 166 ~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~ 245 (287)
T d1pgua2 166 SYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 245 (287)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred eEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence 9999999997 889999999999999 56554 347789999999864 35699999999999999985
Q ss_pred --CcccccccccccCEEEEEe-CCCEEEEEcCCCCeeeeec
Q 003217 488 --GNLLGGWVAHSSPVIKMAV-GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 488 --g~~i~~l~gH~~~V~sla~-dg~~l~S~S~DgtIrlWdl 525 (838)
++++..+.+|.+.|+++++ ++..++|+|.|++||+|++
T Consensus 246 ~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 246 RPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp CTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence 4678889999999999985 3457999999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=1.2e-26 Score=249.38 Aligned_cols=236 Identities=14% Similarity=0.096 Sum_probs=188.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEEC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (838)
.+.+.+++++|+|+.|+.++ ++.|.+|++.++ .....+.+|++.|++++|+|+|+ |+||+.||+|+|||+
T Consensus 17 r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~--------~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~ 87 (311)
T d1nr0a1 17 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSL--------TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDT 87 (311)
T ss_dssp TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCS--------SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEES
T ss_pred CCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCC--------ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeee
Confidence 44667899999999999985 667999999886 55677899999999999999998 789999999999999
Q ss_pred CCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC---CcEEEEeccCccEEE
Q 003217 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF---LSFALWDARTRELLK 346 (838)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~---~tI~lWD~~tg~~l~ 346 (838)
.+........ +..| ...+.++++++++..++++++ ..+++||..+++.+.
T Consensus 88 ~~~~~~~~~~-----------------~~~~----------~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~ 140 (311)
T d1nr0a1 88 TQTTHILKTT-----------------IPVF----------SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG 140 (311)
T ss_dssp SSTTCCEEEE-----------------EECS----------SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCB
T ss_pred eccccccccc-----------------cccc----------cCccccccccccccccccccccccccccccccccccccc
Confidence 7754322110 1111 456888889888888887764 358899988765422
Q ss_pred EEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEE
Q 003217 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala 426 (838)
+ +..|...|.+++
T Consensus 141 ~-------------------------------------------------------------------l~~h~~~v~~v~ 153 (311)
T d1nr0a1 141 N-------------------------------------------------------------------LTGQARAMNSVD 153 (311)
T ss_dssp C-------------------------------------------------------------------CCCCSSCEEEEE
T ss_pred c-------------------------------------------------------------------cccccccccccc
Confidence 2 123344566788
Q ss_pred EcCCCc--EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Cccc-------cc
Q 003217 427 TSIDGM--IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLL-------GG 493 (838)
Q Consensus 427 ~S~dg~--l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i-------~~ 493 (838)
|+|++. +++|+.|++|++||+ +++++..+..|...|+++.+ +|++|++|+.|+.|++||.. ++.+ ..
T Consensus 154 ~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~ 233 (311)
T d1nr0a1 154 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 233 (311)
T ss_dssp ECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS
T ss_pred ccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccc
Confidence 888875 688999999999999 67899999999999999976 68899999999999999986 4332 23
Q ss_pred ccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCC
Q 003217 494 WVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 494 l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~ 529 (838)
..+|.+.|.++++ ++++|+|||.|++|++||+.+..
T Consensus 234 ~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~ 271 (311)
T d1nr0a1 234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 271 (311)
T ss_dssp SCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred cccccccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 4589999999985 68999999999999999987643
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=8.9e-26 Score=246.15 Aligned_cols=244 Identities=22% Similarity=0.305 Sum_probs=177.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc-----CCC-----CCcceeEEeccccccEEEEEEecCCC-EEEee
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL-----DSD-----DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS 259 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~-----~~~-----~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS 259 (838)
.++|+||+|+|+|++|+||+ |++|++||+.++.. ... ..........+|...|++|+|+|+|+ |++|+
T Consensus 62 ~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~ 140 (388)
T d1erja_ 62 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 140 (388)
T ss_dssp SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc
Confidence 88999999999999999997 89999999988631 000 00000112346788899999999998 78999
Q ss_pred CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEe
Q 003217 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWD 338 (838)
Q Consensus 260 ~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD 338 (838)
.||+|++|+....+...... +| ...+.++...+.+..+.+++ ++.+++||
T Consensus 141 ~dg~v~i~~~~~~~~~~~~~-------------------~h----------~~~v~~~~~~~~~~~~~~~~~~~~i~~~d 191 (388)
T d1erja_ 141 EDRLIRIWDIENRKIVMILQ-------------------GH----------EQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191 (388)
T ss_dssp TTSCEEEEETTTTEEEEEEC-------------------CC----------SSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cccccccccccccccccccc-------------------cc----------cccccccccccccccccccccceeeeeee
Confidence 99999999987644322211 11 44677777777777777665 57899999
Q ss_pred ccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccC
Q 003217 339 ARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDD 418 (838)
Q Consensus 339 ~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~ 418 (838)
..+.........+...
T Consensus 192 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 207 (388)
T d1erja_ 192 LRTGQCSLTLSIEDGV---------------------------------------------------------------- 207 (388)
T ss_dssp TTTTEEEEEEECSSCE----------------------------------------------------------------
T ss_pred cccccccccccccccc----------------------------------------------------------------
Confidence 9887764433221100
Q ss_pred CCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEe-------ecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF-------QYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 419 ~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl-------~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
+....+++++. +++|+.|++|++||. ++..+..+ .+|...|+++.+ +|++|++|+.||+|++||+.
T Consensus 208 ---~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~ 284 (388)
T d1erja_ 208 ---TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 284 (388)
T ss_dssp ---EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ---ccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEecc
Confidence 01122334554 789999999999999 67766554 368899999875 68899999999999999975
Q ss_pred -C------------cccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCCC
Q 003217 488 -G------------NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPL 531 (838)
Q Consensus 488 -g------------~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~~ 531 (838)
+ .+......|...|.++++ ++++|++|+.||+|++||+.+..++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~ 343 (388)
T d1erja_ 285 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343 (388)
T ss_dssp --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred CCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE
Confidence 2 234566789999999985 7889999999999999998876544
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.8e-25 Score=241.03 Aligned_cols=242 Identities=15% Similarity=0.184 Sum_probs=176.9
Q ss_pred CCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEe--eCCCcEE
Q 003217 191 VSSVMCMVGDE--ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSG--SEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~--dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~Sg--S~DgtIr 265 (838)
..+|.|++|+| +|.+|+||+.||+||+||+..+.............+..|.++|.+|+|+++|+ |+++ +.|+.++
T Consensus 63 ~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~ 142 (325)
T d1pgua1 63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGV 142 (325)
T ss_dssp TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEE
T ss_pred CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEE
Confidence 56899999997 67899999999999999987642100000111233567999999999999998 5544 4578999
Q ss_pred EEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCC-EEEEeC-CCcEEEEeccCcc
Q 003217 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRE 343 (838)
Q Consensus 266 vWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~V~s~s-~~tI~lWD~~tg~ 343 (838)
+|+++++.....+. +| ...+.++++.+.+. .+++++ ++.+++||..+++
T Consensus 143 ~~~~~~~~~~~~~~-------------------~h----------~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 193 (325)
T d1pgua1 143 FISWDSGNSLGEVS-------------------GH----------SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 193 (325)
T ss_dssp EEETTTCCEEEECC-------------------SC----------SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred EEeecccccceeee-------------------ec----------ccccccccccccccceEEEeecccccccccccccc
Confidence 99997754332222 12 34567777776654 455554 6889999988766
Q ss_pred EEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceE
Q 003217 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (838)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (838)
....+.. +..+...|.
T Consensus 194 ~~~~~~~----------------------------------------------------------------~~~~~~~v~ 209 (325)
T d1pgua1 194 FSASDRT----------------------------------------------------------------HHKQGSFVR 209 (325)
T ss_dssp EEEEECS----------------------------------------------------------------SSCTTCCEE
T ss_pred cceeccc----------------------------------------------------------------ccCCCCccE
Confidence 5332210 112344567
Q ss_pred EEEEcCCC-c-EEEEECCCeEEEEcC-CCCeeeEeecCCccEE----EEE-EcCCEEEEEeeCCeEEEEeCC-Ccccccc
Q 003217 424 ALTTSIDG-M-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ----CLC-TFGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (838)
Q Consensus 424 ala~S~dg-~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~----sls-~dG~~LasGs~DgtIrlWD~~-g~~i~~l 494 (838)
+++|+||+ . +++|+.|++|++||+ ++++++++.+|..+|. +++ ++|++|++|+.|++|+|||++ +++++.+
T Consensus 210 ~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~ 289 (325)
T d1pgua1 210 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW 289 (325)
T ss_dssp EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence 88899873 4 789999999999999 7999999999887764 444 478999999999999999997 7888888
Q ss_pred cccccCE----EEEEe-CCCEEEEEcCCCCeeeeec
Q 003217 495 VAHSSPV----IKMAV-GAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 495 ~gH~~~V----~sla~-dg~~l~S~S~DgtIrlWdl 525 (838)
..|...+ .++.+ .+.+++|+|.||+|++||+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 290 TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 7776542 34444 3458999999999999995
|
| >d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: Inositol polyphosphate 5-phosphatase (IPP5) domain: Salivary nitrophorin species: Bedbug (Cimex lectularius) [TaxId: 79782]
Probab=99.94 E-value=4.9e-27 Score=247.91 Aligned_cols=230 Identities=17% Similarity=0.280 Sum_probs=180.2
Q ss_pred cceeeEEEEEEeCCCCCCcccccccccCC-CCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcC
Q 003217 550 ENLKILAGTWNVGQGRASQDALISWLGSA-ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILD 628 (838)
Q Consensus 550 ~~~~i~~~twNv~~~~~~~~~l~~wl~~~-~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~ 628 (838)
..++|.+.|||||+.++. .++.+|+... ..+||||||||||+.+.... ....+.|.+.+.+.+.
T Consensus 3 ~~~~v~I~TwNv~~~~~~-~~~~~~l~~i~~~~pDI~vI~lQE~~~~~~~--------------~~~~~~~~~~~~~~~~ 67 (280)
T d2imqx1 3 AQLSVHTVSWNSGHERAP-TNLEELLGLNSGETPDVIAVAVQGFGFQTDK--------------PQQGPACVKNFQSLLT 67 (280)
T ss_dssp SEEEEEEEEEEEETCCCC-SCCHHHHTCTTSCCCSEEEEEEEESCTTTCT--------------TCCHHHHHHHHHHHHH
T ss_pred CceEEEEEEECCCCCcCC-cCHHHHhcccccCCCCEEEEEeEecCccccc--------------cchhHHHHHHHHHHhc
Confidence 467899999999988764 5677777643 35799999999999653211 1123567777777764
Q ss_pred CCCCEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcchHHHH
Q 003217 629 DGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRR 708 (838)
Q Consensus 629 ~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~R 708 (838)
...|..+...+++++.+++|+|.++..+. +....+.+|+++.++|||+|.+++.+.++.|+|+|+||.++..+..+|
T Consensus 68 -~~~y~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~in~hl~~~~~~~~~~ 144 (280)
T d2imqx1 68 -SKGYTKLKNTITETMGLTVYCLEKHLDQN--TLKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNT 144 (280)
T ss_dssp -HTTEEEEEEEECSSEEEEEEEEGGGCCTT--TCCCEEEEEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCTTSS
T ss_pred -cCCeeEEEeeeeeceEEEEEEcccccccc--eecceeEeccCCcccCCcEEEEEEEECCEEEEeecccCCccchhHHHH
Confidence 35799999999999999999999998664 445567778888899999999999999999999999999887664444
Q ss_pred HHHHHHHHHhcCcCCCCCcccccccCCCceeeecccCCCCCCCcccCCCCcCcccEEEEeccceeeecCCChHHHHHHhh
Q 003217 709 NADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFIS 788 (838)
Q Consensus 709 n~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~~i~ 788 (838)
..+.... . ........++++||+||||+|... ......+.+.
T Consensus 145 ~~~~~~~--~-----------------------------------~~~~~~~~~~~vi~~GD~N~~~~~-~~~~~~~~~~ 186 (280)
T d2imqx1 145 KYAYDTR--L-----------------------------------DYSKKDDPSDFLFWIGDLNVRVET-NATHAKSLVD 186 (280)
T ss_dssp SSSCCGG--G-----------------------------------CTTSSSSCCSEEEEEEECSCCBCS-CHHHHHHHHH
T ss_pred HHHHHHh--h-----------------------------------hhhhhccCCCeeEEeccccccccc-ccHHHHhhhh
Confidence 3221100 0 001123467899999999999997 7778888888
Q ss_pred hcchHHHhhccchHHHHhcCCCcCCcccCCCCCCCCCcccCCCCCccC
Q 003217 789 QRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAG 836 (838)
Q Consensus 789 ~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~ 836 (838)
...++.++..|||.... .+.+|.+|+|++++|.||||+..+.+.|.+
T Consensus 187 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ft~~~~~~~~~~~~~~ 233 (280)
T d2imqx1 187 QNNIDGLMAFDQLKKAK-EQKLFDGWTEPQVTFKPTYKFKPNTDEYDL 233 (280)
T ss_dssp TTCHHHHHTTBTHHHHH-HTTSSTTCBCCCCCSCCCBCBCTTSSCBCT
T ss_pred cccchhhHHHHHHHHhh-hcchhhccccCCCCCCCcccccCccccCCC
Confidence 88999999999998876 468999999999999999999998887653
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=7.5e-23 Score=216.78 Aligned_cols=269 Identities=16% Similarity=0.157 Sum_probs=197.0
Q ss_pred ceeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE
Q 003217 133 CFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (838)
Q Consensus 133 ~~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG 209 (838)
..+.+|+.+ +..|.+ +.|++|+|||+.+...... ...| ..+|.+++|+|++.++++|
T Consensus 56 ~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~-~~~v~~v~~~~~~~~l~~~ 115 (340)
T d1tbga_ 56 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA-------------------IPLR-SSWVMTCAYAPSGNYVACG 115 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE-------------------EECS-CSCEEEEEECTTSSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCceeeeecccceeEEE-------------------Eecc-cccEEeeEeeccceeeeee
Confidence 357777765 335655 5699999999976543211 1234 7799999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
+.|++|++|+..... ........+.+|...+.......+..+..+..|.+.+.|............
T Consensus 116 ~~d~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 181 (340)
T d1tbga_ 116 GLDNICSIYNLKTRE----GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT---------- 181 (340)
T ss_dssp ETTCCEEEEESSSSC----SCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEE----------
T ss_pred cccceeecccccccc----cccccceeccccccccccccccccccccccccccccccccccccccccccc----------
Confidence 999999999987642 223445678899998888888777778899999999999875532211110
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCccccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (838)
.....+......+....++++. +++|++||+++++++.++.+|...+..+.
T Consensus 182 -------------------~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~--------- 233 (340)
T d1tbga_ 182 -------------------GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC--------- 233 (340)
T ss_dssp -------------------CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEE---------
T ss_pred -------------------ccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEE---------
Confidence 0123455555666666666655 67899999999999988876654433333
Q ss_pred ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccC--------ccccCCCceEEEEEcCCCc-EEEEECC
Q 003217 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG--------GFGDDNRRTEALTTSIDGM-IWTGGAN 439 (838)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g--------~~~~~~~~v~ala~S~dg~-l~Sgs~D 439 (838)
+.+++...++|..++..+++... ....+...+.++++++++. |++|+.|
T Consensus 234 ----------------------~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d 291 (340)
T d1tbga_ 234 ----------------------FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291 (340)
T ss_dssp ----------------------ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETT
T ss_pred ----------------------ECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECC
Confidence 33333444555556555554310 1223556788999999987 7899999
Q ss_pred CeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEe
Q 003217 440 GLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (838)
Q Consensus 440 gtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (838)
|+|++||+ +++++.++.+|..+|+++++ +|++|++|+.||+|+|||
T Consensus 292 g~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 99999999 79999999999999999976 688999999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=4.1e-23 Score=217.91 Aligned_cols=267 Identities=16% Similarity=0.247 Sum_probs=176.2
Q ss_pred ceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeee
Q 003217 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (838)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~ 310 (838)
+....|+||+++|.+ +++++|+ |+|||.||+|||||+.+++...++. +|
T Consensus 7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~-------------------~h---------- 56 (342)
T d2ovrb2 7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-------------------GH---------- 56 (342)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECC-------------------CC----------
T ss_pred CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEe-------------------CC----------
Confidence 667789999999866 4677787 8999999999999998765433322 22
Q ss_pred cCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcce---
Q 003217 311 TSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQ--- 386 (838)
Q Consensus 311 s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~--- 386 (838)
...|.++.+.+ ..+++++ |+++++|+................................+..+.++... ..+..
T Consensus 57 ~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~ 133 (342)
T d2ovrb2 57 TGGVWSSQMRD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE-TGQCLHVL 133 (342)
T ss_dssp SSCEEEEEEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESS-SCCEEEEE
T ss_pred CCCEEEEEeCC--CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecc-cccceeee
Confidence 34566677654 3666665 68999999988776554433322111111111000000001111111111 00000
Q ss_pred -----eeeeEeecCcceeeecCCcEEEEecc------CccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeee
Q 003217 387 -----SSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQ 453 (838)
Q Consensus 387 -----~s~~~~~~~~~~~~g~~~~v~~v~~~------g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~ 453 (838)
............+.+..++..+++.. ..+..+...+..+.+ ++. +++|+.||+|++||+ .+++++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~ 211 (342)
T d2ovrb2 134 MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH 211 (342)
T ss_dssp ECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred ecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeee
Confidence 01112223345566666666665541 123345555544444 444 899999999999999 789999
Q ss_pred EeecCCccEEEEEEcCCEEEEEeeCCeEEEEeCC-Ccc---cccccccccCEEEEEeCCCEEEEEcCCCCeeeeecCCCC
Q 003217 454 DFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNL---LGGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 454 tl~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~---i~~l~gH~~~V~sla~dg~~l~S~S~DgtIrlWdl~s~~ 529 (838)
++.+|...|.++++++++|++|+.|++|++||.. .+. +.....|...+.++.++++++++++.||+||+||+.+..
T Consensus 212 ~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~ 291 (342)
T d2ovrb2 212 TLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE 291 (342)
T ss_dssp EECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC
T ss_pred EecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCC
Confidence 9999999999999999999999999999999986 444 344456788999999999999999999999999998765
Q ss_pred CCch
Q 003217 530 PLDS 533 (838)
Q Consensus 530 ~~d~ 533 (838)
.+..
T Consensus 292 ~i~~ 295 (342)
T d2ovrb2 292 FIRN 295 (342)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5433
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=3.9e-23 Score=228.15 Aligned_cols=277 Identities=13% Similarity=0.121 Sum_probs=178.7
Q ss_pred eeEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCe------EEEEEcC-CCCE
Q 003217 134 FLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSV------MCMVGDE-ASGV 205 (838)
Q Consensus 134 ~~~~l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V------~~la~s~-dg~~ 205 (838)
.+.+++..++.+.+ +.|++|||||..+...... .........+ ...+ .++..+. ++.+
T Consensus 16 ~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~-------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 81 (393)
T d1sq9a_ 16 DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENP-------------KDKSYSHFVH-KSGLHHVDVLQAIERDAFELCL 81 (393)
T ss_dssp CEEEEEECSSEEEEEETTSEEEEEESBCCTTCCG-------------GGGEEEEECC-TTCEEEEEEEEEEETTTEEEEE
T ss_pred ccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcc-------------cceeEeeeec-cCCceEeeeEeeeccCCCCCcE
Confidence 46677777777776 6799999999765332110 0000001011 1121 2222221 2357
Q ss_pred EEEEeCCCcEEEEECCCCccCCCCCccee------EEeccccccEEEEEEecCC-----C-EEEeeCCCcEEEEECCCcc
Q 003217 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEV------LSWQAHRGPVLSLCISSYG-----D-LWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 206 LaSGs~DGtIrvWd~~~g~~~~~~~~~~~------~~l~gH~~~V~slafs~dG-----~-L~SgS~DgtIrvWd~~~~~ 273 (838)
+++++.||+|++|++..... ..... .....|...+.++++.+++ . +++++.||+|++|++....
T Consensus 82 ~~s~~~dg~v~~w~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~ 157 (393)
T d1sq9a_ 82 VATTSFSGDLLFYRITREDE----TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 157 (393)
T ss_dssp EEEEETTSCEEEEEEEECTT----TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred EEEEeCCCcEEEEEccCCCc----eeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCC
Confidence 88999999999999765420 00000 1113456778888888764 2 6899999999999985422
Q ss_pred ee-eecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecC
Q 003217 274 KA-LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNID 351 (838)
Q Consensus 274 ~~-~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~ 351 (838)
.. ............+ ...... .......+.++++++++ .+++++ |++|+|||+.+++++..+...
T Consensus 158 ~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~ 224 (393)
T d1sq9a_ 158 DESNSLTLNWSPTLEL--QGTVES----------PMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ 224 (393)
T ss_dssp SHHHHTTTCCCCEEEE--EEEECC----------SSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred cccceeeeeeccceec--ccceec----------ccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccc
Confidence 11 1111100000000 000000 00112346677887765 777776 689999999999887655321
Q ss_pred CceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCC
Q 003217 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG 431 (838)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg 431 (838)
. .+..|...|.+|+|+|||
T Consensus 225 ~-------------------------------------------------------------~l~~h~~~V~~l~~spdg 243 (393)
T d1sq9a_ 225 H-------------------------------------------------------------SMINNSNSIRSVKFSPQG 243 (393)
T ss_dssp C----------------------------------------------------------------CCCCCEEEEEECSST
T ss_pred c-------------------------------------------------------------ccccccceEEEccccccc
Confidence 0 123466678899999999
Q ss_pred c-EEEEECCCe---EEEEcC-CCCeeeEee-------------cCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccc
Q 003217 432 M-IWTGGANGL---LLQWDP-NGNRLQDFQ-------------YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNL 490 (838)
Q Consensus 432 ~-l~Sgs~Dgt---IrlWD~-~g~~l~tl~-------------~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~ 490 (838)
+ |++|+.|++ |++||+ +|++++++. +|.+.|++|++ +|++|++|+.|++|+|||++ |++
T Consensus 244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~ 323 (393)
T d1sq9a_ 244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 323 (393)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCE
Confidence 8 789998874 999999 788888774 79999999976 78999999999999999987 899
Q ss_pred cccccccccCEE
Q 003217 491 LGGWVAHSSPVI 502 (838)
Q Consensus 491 i~~l~gH~~~V~ 502 (838)
+.++.||.+.|.
T Consensus 324 ~~~l~gH~~~v~ 335 (393)
T d1sq9a_ 324 ITTLNMHCDDIE 335 (393)
T ss_dssp EEEEECCGGGCS
T ss_pred EEEECCcCCccc
Confidence 999999998875
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.7e-23 Score=219.96 Aligned_cols=277 Identities=10% Similarity=0.028 Sum_probs=177.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC--EEEeeCCCcEEEEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd 268 (838)
...|.+|+|+|++++|+|||.||+||+||++++. .........+|.++|++++|+|++. |+||+.|++|++|+
T Consensus 11 ~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~-----~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~ 85 (342)
T d1yfqa_ 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA-----KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT-----TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred CCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCC-----cceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence 6789999999999999999999999999997752 1122334458999999999999764 78999999999999
Q ss_pred CCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEE-eCCCcEEEEeccCccEEEE
Q 003217 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS-AGFLSFALWDARTRELLKV 347 (838)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s-~s~~tI~lWD~~tg~~l~~ 347 (838)
+............. ..........++...+++ +.++++++||++++.....
T Consensus 86 ~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~ 137 (342)
T d1yfqa_ 86 LIGSPSFQALTNNE----------------------------ANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVI 137 (342)
T ss_dssp SSSSSSEEECBSCC----------------------------CCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCE
T ss_pred cccccccccccccc----------------------------cccccccccccccccccccccccccceeecccccccee
Confidence 97644322221100 001111222223344444 4478999999976543222
Q ss_pred EecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccC--c-------cccC
Q 003217 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG--G-------FGDD 418 (838)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g--~-------~~~~ 418 (838)
+...... .. . ........+.......+.+..++..+++... . ....
T Consensus 138 ~~~~~~~------~~---~----------------~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~ 192 (342)
T d1yfqa_ 138 AVKNLNS------NN---T----------------KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192 (342)
T ss_dssp EEEESCS------SS---S----------------SSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSC
T ss_pred eeccccc------cc---c----------------cceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeeccc
Confidence 2110000 00 0 0000011122223344556666655555311 0 0112
Q ss_pred CCceEEEEE-cCCCc-EEEEECCCeEEEEcCCC-Ce------e---------eEeecCCccEEEEEE--cCCEEEEEeeC
Q 003217 419 NRRTEALTT-SIDGM-IWTGGANGLLLQWDPNG-NR------L---------QDFQYLPFAVQCLCT--FGSQIWVGYMN 478 (838)
Q Consensus 419 ~~~v~ala~-S~dg~-l~Sgs~DgtIrlWD~~g-~~------l---------~tl~~H~~~V~sls~--dG~~LasGs~D 478 (838)
...+.+... +.++. +++++.||.+.+|+... .. . ....+|...|++|++ ++++|++|+.|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~D 272 (342)
T d1yfqa_ 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD 272 (342)
T ss_dssp SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT
T ss_pred ccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCC
Confidence 223444443 44444 78999999999998732 11 1 112357778998875 68899999999
Q ss_pred CeEEEEeCC-Cccccccc-ccccCEEEEEeCCCEEEEEcCCCCeeeeec
Q 003217 479 GIVQVLDLE-GNLLGGWV-AHSSPVIKMAVGAGYIFTLANHGGIRGWNV 525 (838)
Q Consensus 479 gtIrlWD~~-g~~i~~l~-gH~~~V~sla~dg~~l~S~S~DgtIrlWdl 525 (838)
|+|+|||++ ++.+..+. .|...|.+++++|+.+++++.|+++++|..
T Consensus 273 g~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 273 GIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred CEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence 999999997 66777775 567778899999999999999999999974
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.91 E-value=3.8e-23 Score=217.52 Aligned_cols=243 Identities=12% Similarity=0.074 Sum_probs=168.7
Q ss_pred ceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeee
Q 003217 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (838)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~ 310 (838)
.....++||+++|++|+|+|||+ |+|||.||+||+||+++++....+.. .|
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~------------------~h---------- 54 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD------------------VH---------- 54 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC------------------SC----------
T ss_pred ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcC------------------CC----------
Confidence 34567899999999999999998 78999999999999987543322211 11
Q ss_pred cCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeee
Q 003217 311 TSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFG 390 (838)
Q Consensus 311 s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~ 390 (838)
...+.++++.+++..+.++.++++++|+....... . ...... . .......+.
T Consensus 55 ~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~-~---~~~~~~----------------------~--~~~~~~~~~ 106 (299)
T d1nr0a2 55 ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVD-S---SKAVAN----------------------K--LSSQPLGLA 106 (299)
T ss_dssp SSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSC-T---TSCCEE----------------------E--CSSCEEEEE
T ss_pred CCcEEEEEeeccceeecccceeeEEEeccCCcccc-c---cccccc----------------------c--ccccccccc
Confidence 34577888888887777778899999998653320 0 000000 0 000011223
Q ss_pred EeecCcceeeecCCcEEEEeccC-ccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcCC-CCeee-EeecCCccEEEEE
Q 003217 391 FFQRSRNAIMGAADAVRRVAAKG-GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN-GNRLQ-DFQYLPFAVQCLC 466 (838)
Q Consensus 391 ~~~~~~~~~~g~~~~v~~v~~~g-~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~~-g~~l~-tl~~H~~~V~sls 466 (838)
+.+++..+..+..+.+..+.... .-......+.+++++|++. +++|+.|+.|++||++ +++.. ....|..+|++++
T Consensus 107 ~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~ 186 (299)
T d1nr0a2 107 VSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 186 (299)
T ss_dssp ECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33333333344333333332210 0112334567889999987 7899999999999994 54433 3447899999997
Q ss_pred E--cCCEEEEEeeCCeEEEEeCC-Cc---ccccccccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCC
Q 003217 467 T--FGSQIWVGYMNGIVQVLDLE-GN---LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 467 ~--dG~~LasGs~DgtIrlWD~~-g~---~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
+ ++++|++|+.|+.|++||+. +. ....+.+|...|.++++ +++++++++.|++|++||+..+..
T Consensus 187 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~ 258 (299)
T d1nr0a2 187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 258 (299)
T ss_dssp ECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCc
Confidence 6 68899999999999999986 43 35678899999999984 788999999999999999876543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.90 E-value=1.2e-22 Score=222.32 Aligned_cols=291 Identities=12% Similarity=0.049 Sum_probs=192.9
Q ss_pred eEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeC
Q 003217 135 LRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (838)
Q Consensus 135 ~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~ 211 (838)
+.+++.+ ++.|.+ +.|+.|+|||+.+.... + ...++ .| .++|.||+|+|++++|+||+.
T Consensus 10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~-~--------------~~~l~--gH-~~~V~~l~fsp~~~~l~s~s~ 71 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-Q--------------VHELK--EH-NGQVTGVDWAPDSNRIVTCGT 71 (371)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEEE-E--------------EEEEE--CC-SSCEEEEEEETTTTEEEEEET
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEECCCCCEE-E--------------EEEec--CC-CCCEEEEEECCCCCEEEEEEC
Confidence 5566654 445555 45789999998643211 0 01122 23 789999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
|++|++||+.++. .+....+.+|...|++++|+|+++ |++|+.|++|++|+++..........
T Consensus 72 D~~i~vWd~~~~~------~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~---------- 135 (371)
T d1k8kc_ 72 DRNAYVWTLKGRT------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH---------- 135 (371)
T ss_dssp TSCEEEEEEETTE------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE----------
T ss_pred CCeEEEEeecccc------cccccccccccccccccccccccccceeecccCcceeeeeecccccccccc----------
Confidence 9999999998752 234566789999999999999998 88999999999999865332111000
Q ss_pred eeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccc
Q 003217 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (838)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (838)
..+.+ ...+.++++++++..+++++ |++|++||+..+.......... .......
T Consensus 136 -----~~~~~----------~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~---------~~~~~~~- 190 (371)
T d1k8kc_ 136 -----IKKPI----------RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP---------WGSKMPF- 190 (371)
T ss_dssp -----ECTTC----------CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBT---------TBSCCCT-
T ss_pred -----ccccc----------ccccccccccccccceeccccCcEEEEEeeccCcccccccccc---------ccccccc-
Confidence 00111 34678888888888888876 6899999987654311110000 0000000
Q ss_pred cceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc------CccccCCCceEEEEEcCCCcEEEEECCCeEE
Q 003217 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRTEALTTSIDGMIWTGGANGLLL 443 (838)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~------g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIr 443 (838)
.. .+.........+..+.|.+++..++++..++..++|.. ..+..|...|.+++|++|+.+++++.|+.++
T Consensus 191 ~~---~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~ 267 (371)
T d1k8kc_ 191 GE---LMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPV 267 (371)
T ss_dssp TC---EEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCE
T ss_pred ee---eeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceE
Confidence 00 00111122333456778888777888888888877751 2344577789999999999987777788777
Q ss_pred EEcC-C--CCeeeE---------------------------------------eecCCccEEEEEE--cC----CEEEEE
Q 003217 444 QWDP-N--GNRLQD---------------------------------------FQYLPFAVQCLCT--FG----SQIWVG 475 (838)
Q Consensus 444 lWD~-~--g~~l~t---------------------------------------l~~H~~~V~sls~--dG----~~LasG 475 (838)
+|.. . +.+... ...|.+.|+++++ .+ ..+++|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~ 347 (371)
T d1k8kc_ 268 LFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTT 347 (371)
T ss_dssp EEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEE
T ss_pred EEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEE
Confidence 7654 1 111000 0138889999865 22 379999
Q ss_pred eeCCeEEEEeCC
Q 003217 476 YMNGIVQVLDLE 487 (838)
Q Consensus 476 s~DgtIrlWD~~ 487 (838)
+.||+|+|||++
T Consensus 348 g~Dg~v~iW~~~ 359 (371)
T d1k8kc_ 348 GMDGGMSIWDVR 359 (371)
T ss_dssp ETTSEEEEEEHH
T ss_pred cCCCeEEEEeCC
Confidence 999999999975
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=1.3e-22 Score=223.93 Aligned_cols=269 Identities=14% Similarity=0.125 Sum_probs=166.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEe----cCC---C-EEEeeCCC
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCIS----SYG---D-LWSGSEGG 262 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs----~dG---~-L~SgS~Dg 262 (838)
.+.|+||++++ ++|+|||.|++||+||..+.. ...+.........|...+..+... .++ . +++++.||
T Consensus 14 ~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg 89 (393)
T d1sq9a_ 14 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLD--NENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 89 (393)
T ss_dssp SSCEEEEEECS--SEEEEEETTSEEEEEESBCCT--TCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred cCccEEEEEeC--CEEEEEECCCeEEEEECCCCC--CCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCC
Confidence 78999999874 799999999999999987642 112223344445666655444321 122 2 56999999
Q ss_pred cEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCC-----CCEEEE-eCCCcEEE
Q 003217 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-----RAKVWS-AGFLSFAL 336 (838)
Q Consensus 263 tIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-----~~~V~s-~s~~tI~l 336 (838)
+|++|++...........+. .. .+.... ....+..++.... +..+.+ +.++++++
T Consensus 90 ~v~~w~~~~~~~~~~~~~~~---------~~--~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~v 150 (393)
T d1sq9a_ 90 DLLFYRITREDETKKVIFEK---------LD--LLDSDM--------KKHSFWALKWGASNDRLLSHRLVATDVKGTTYI 150 (393)
T ss_dssp CEEEEEEEECTTTCCEEEEE---------EC--CSCTTG--------GGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred cEEEEEccCCCceeeeeccc---------cc--eeeecc--------CCCceEEEEEecCCCcccccEEEEEcCCCcEEE
Confidence 99999975432211110000 00 000000 0112222222221 223333 44789999
Q ss_pred EeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccc
Q 003217 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (838)
Q Consensus 337 WD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~ 416 (838)
||+....... . ...... ... .... + ......
T Consensus 151 w~~~~~~~~~-------~----~~~~~~------------------~~~---~~~~--------~---------~~~~~~ 181 (393)
T d1sq9a_ 151 WKFHPFADES-------N----SLTLNW------------------SPT---LELQ--------G---------TVESPM 181 (393)
T ss_dssp EEEESSSSHH-------H----HTTTCC------------------CCE---EEEE--------E---------EECCSS
T ss_pred EEeecCCccc-------c----eeeeee------------------ccc---eecc--------c---------ceeccc
Confidence 9975422100 0 000000 000 0000 0 000111
Q ss_pred cCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeE------eecCCccEEEEEE--cCCEEEEEeeCC---eEEEE
Q 003217 417 DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQD------FQYLPFAVQCLCT--FGSQIWVGYMNG---IVQVL 484 (838)
Q Consensus 417 ~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~t------l~~H~~~V~sls~--dG~~LasGs~Dg---tIrlW 484 (838)
.+...+.+++++||+.+++|+.|++|++||+ +++++.+ +.+|..+|++|++ +|++|++|+.|+ .|+||
T Consensus 182 ~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lw 261 (393)
T d1sq9a_ 182 TPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 261 (393)
T ss_dssp SSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred CCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeec
Confidence 2334467899999999999999999999999 6776654 4579999999875 799999999987 59999
Q ss_pred eCC-Ccccccc-------------cccccCEEEEEe--CCCEEEEEcCCCCeeeeecCCCCCC
Q 003217 485 DLE-GNLLGGW-------------VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPL 531 (838)
Q Consensus 485 D~~-g~~i~~l-------------~gH~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~~~~ 531 (838)
|++ ++++.++ .||++.|++|++ |+++|+|+|.|++||+||+.+..++
T Consensus 262 d~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~ 324 (393)
T d1sq9a_ 262 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 324 (393)
T ss_dssp ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred ccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEE
Confidence 987 6555544 589999999985 7889999999999999999876544
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=1.4e-22 Score=218.02 Aligned_cols=246 Identities=15% Similarity=0.143 Sum_probs=178.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCccCCCCCcceeEEeccc-cccEEEEEEec--CCC-EEEeeCCCcEE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDG-RIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISS--YGD-LWSGSEGGGIK 265 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DG-tIrvWd~~~g~~~~~~~~~~~~~l~gH-~~~V~slafs~--dG~-L~SgS~DgtIr 265 (838)
.+.+.+++|+|+|..|+.++.+. .|+.|+.... .......+.|| ..+|++|+|+| +|+ |+||+.||+||
T Consensus 17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~------~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~ 90 (325)
T d1pgua1 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDS------KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI 90 (325)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCC------SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCC------CccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEE
Confidence 44678899999999999987665 3677775442 22456778888 57899999998 455 68999999999
Q ss_pred EEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC---CCcEEEEeccCc
Q 003217 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDARTR 342 (838)
Q Consensus 266 vWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s---~~tI~lWD~~tg 342 (838)
|||+........... .. ..........+..++.++++..+++++ +..+++|+..++
T Consensus 91 iWd~~~~~~~~~~~~---~~------------------~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~ 149 (325)
T d1pgua1 91 VWGWTFDKESNSVEV---NV------------------KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG 149 (325)
T ss_dssp EEEEEEEGGGTEEEE---EE------------------EEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC
T ss_pred EeeecCCcceeeeec---cc------------------ccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc
Confidence 999865332111100 00 000011245678888888888777654 346889998888
Q ss_pred cEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCce
Q 003217 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (838)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (838)
+++..+.+ |...|
T Consensus 150 ~~~~~~~~-------------------------------------------------------------------h~~~v 162 (325)
T d1pgua1 150 NSLGEVSG-------------------------------------------------------------------HSQRI 162 (325)
T ss_dssp CEEEECCS-------------------------------------------------------------------CSSCE
T ss_pred ccceeeee-------------------------------------------------------------------ccccc
Confidence 77655432 22334
Q ss_pred EEEEEcCCCc--EEEEECCCeEEEEcC-CCCeeeE---eecCCccEEEEEE--c-CCEEEEEeeCCeEEEEeCC-Ccccc
Q 003217 423 EALTTSIDGM--IWTGGANGLLLQWDP-NGNRLQD---FQYLPFAVQCLCT--F-GSQIWVGYMNGIVQVLDLE-GNLLG 492 (838)
Q Consensus 423 ~ala~S~dg~--l~Sgs~DgtIrlWD~-~g~~l~t---l~~H~~~V~sls~--d-G~~LasGs~DgtIrlWD~~-g~~i~ 492 (838)
.++++++++. +++++.|++|++||. .++.... +..|...|.++++ + +.+|++|+.|+.|++||++ ++++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~ 242 (325)
T d1pgua1 163 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 242 (325)
T ss_dssp EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred ccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccc
Confidence 5667777764 678999999999998 5554444 4467888999976 3 5799999999999999987 78889
Q ss_pred cccccccCE----EEEE-eCCCEEEEEcCCCCeeeeecCCCCC
Q 003217 493 GWVAHSSPV----IKMA-VGAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 493 ~l~gH~~~V----~sla-~dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
++.+|...| .++. +++++++|++.|++|++||+.+..+
T Consensus 243 ~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~ 285 (325)
T d1pgua1 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC 285 (325)
T ss_dssp ECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEE
T ss_pred cccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCE
Confidence 999888765 4454 4789999999999999999876443
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=5e-20 Score=189.40 Aligned_cols=229 Identities=16% Similarity=0.202 Sum_probs=163.8
Q ss_pred ceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeee
Q 003217 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (838)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~ 310 (838)
+.+....+|...|+|+.| ||+ |+|||.||+|||||+.+++...++. +|
T Consensus 6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~-------------------~H---------- 54 (293)
T d1p22a2 6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT-------------------GH---------- 54 (293)
T ss_dssp CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEEC-------------------CC----------
T ss_pred EEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEe-------------------cC----------
Confidence 455566788999998765 677 8999999999999998765433332 22
Q ss_pred cCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeee
Q 003217 311 TSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSF 389 (838)
Q Consensus 311 s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~ 389 (838)
...|.++.. ++..|++++ |++|++|++.++...................
T Consensus 55 ~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 104 (293)
T d1p22a2 55 TGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN---------------------------- 104 (293)
T ss_dssp SSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC----------------------------
T ss_pred CCCEeeeec--ccceeeccccccccccccccccccccccccccccccccccc----------------------------
Confidence 345666655 456777776 6789999999988766554322211000000
Q ss_pred eEeecCcceeeecCCcEEEEec---------cCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCC
Q 003217 390 GFFQRSRNAIMGAADAVRRVAA---------KGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLP 459 (838)
Q Consensus 390 ~~~~~~~~~~~g~~~~v~~v~~---------~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~ 459 (838)
....+.+..++..+++. ...+..+...+..+.+.++ .+++++.|++|++||. +++++..+.+|.
T Consensus 105 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~d~~i~~~d~~~~~~~~~~~~~~ 178 (293)
T d1p22a2 105 -----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWNTSTCEFVRTLNGHK 178 (293)
T ss_dssp -----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred -----ccceeecccccceeEeeccccccccccccccccccccccceeccc-ccccccCCCceeeecCCCCcEEEEEcccc
Confidence 00111122222222211 0012334555555555443 4788999999999999 789999999999
Q ss_pred ccEEEEEEcCCEEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEeCCCEEEEEcCCCCeeeeecCC
Q 003217 460 FAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (838)
Q Consensus 460 ~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~~l~S~S~DgtIrlWdl~s 527 (838)
..|..+.+++.++++|+.|++|++||+. .+.+..+.+|...|..+..++.++++++.|++|++||+..
T Consensus 179 ~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~ 247 (293)
T d1p22a2 179 RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVA 247 (293)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHH
T ss_pred cccccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcCCCEEEEEECCC
Confidence 9999999999999999999999999987 6788999999999999999999999999999999999754
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=8.7e-21 Score=199.03 Aligned_cols=290 Identities=10% Similarity=0.048 Sum_probs=175.8
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceee-ecCCCCeEEEEEcCCC-CEEEE
Q 003217 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKES-VKGVSSVMCMVGDEAS-GVVWS 208 (838)
Q Consensus 134 ~~~~l~~~--~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~~~V~~la~s~dg-~~LaS 208 (838)
.+.+|+.+ ++.|.+ +.|++|||||+.+..... .+... .| .++|.|++|+|++ .+|+|
T Consensus 13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~-----------------~~~~~~~h-~~~V~~v~f~~~~~~~l~s 74 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV-----------------DLLQSLRY-KHPLLCCNFIDNTDLQIYV 74 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE-----------------EEEEEEEC-SSCEEEEEEEESSSEEEEE
T ss_pred CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce-----------------EEEEecCC-CCCEEEEEEeCCCCCEEEE
Confidence 46667664 556666 569999999986532211 11111 23 7899999999864 68999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccc-cccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeee
Q 003217 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (838)
Q Consensus 209 Gs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH-~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~ 286 (838)
|+.||+|++|++..+ ........| ........+.+++. +++++.|+++++||+.+..........
T Consensus 75 g~~d~~v~~w~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~----- 141 (342)
T d1yfqa_ 75 GTVQGEILKVDLIGS--------PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKN----- 141 (342)
T ss_dssp EETTSCEEEECSSSS--------SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEE-----
T ss_pred cccccceeeeecccc--------cccccccccccccccccccccccccccccccccccceeeccccccceeeecc-----
Confidence 999999999999886 333444333 33444445555554 789999999999998543211100000
Q ss_pred EEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEE-eCCCcEEEEeccCccEEEEEec---CCceEEeeeccc
Q 003217 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS-AGFLSFALWDARTRELLKVFNI---DGQIENRVDMSL 362 (838)
Q Consensus 287 ~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s-~s~~tI~lWD~~tg~~l~~l~~---~~~~~~~~~~s~ 362 (838)
...+ .. ............+..+++ +.++.|++||+.+++....+.. ...........+
T Consensus 142 ----------~~~~--~~------~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (342)
T d1yfqa_ 142 ----------LNSN--NT------KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLP 203 (342)
T ss_dssp ----------SCSS--SS------SSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECS
T ss_pred ----------cccc--cc------cceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeec
Confidence 0000 00 001112222233444444 4478999999987654222111 000000000000
Q ss_pred CcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec---------------------cCccccCCCc
Q 003217 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA---------------------KGGFGDDNRR 421 (838)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~---------------------~g~~~~~~~~ 421 (838)
........+..++...++. ......+...
T Consensus 204 ------------------------------~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (342)
T d1yfqa_ 204 ------------------------------KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP 253 (342)
T ss_dssp ------------------------------GGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCC
T ss_pred ------------------------------CCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccccc
Confidence 0011112222232222221 1122345667
Q ss_pred eEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEee-cCCccEEEEEEcCCEEEEEeeCCeEEEEeCCCcccccccccc
Q 003217 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ-YLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHS 498 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~-~H~~~V~sls~dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~ 498 (838)
+.+++|+|++. |+||+.||+|++||+ +++++.++. .|...+.+++++|+++++|+.|+++++|... ..++..|.
T Consensus 254 v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~---~~~~~~~~ 330 (342)
T d1yfqa_ 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI---DQTIELNA 330 (342)
T ss_dssp EEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSS---CTTSCCCC
T ss_pred ceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEeeee---CCCccCCC
Confidence 88999999987 899999999999999 788898886 4677889999999999999999999988743 34566777
Q ss_pred cCEEEEE
Q 003217 499 SPVIKMA 505 (838)
Q Consensus 499 ~~V~sla 505 (838)
..|+.+.
T Consensus 331 ~~i~~~~ 337 (342)
T d1yfqa_ 331 SSIYIIF 337 (342)
T ss_dssp CEEEEEE
T ss_pred CeEEEEc
Confidence 7777654
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.85 E-value=1.4e-20 Score=201.49 Aligned_cols=315 Identities=7% Similarity=-0.002 Sum_probs=187.9
Q ss_pred eeEEEEe-cCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 003217 134 FLRTIVC-TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (838)
Q Consensus 134 ~~~~l~~-~~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~D 212 (838)
|...+.. +++.+..++++.|++||+.+.... ...| ...|.+++|+|||+.|++++.|
T Consensus 6 ~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~---------------------~~~~-~~~v~~~~~spDg~~l~~~~~~ 63 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL---------------------KVPE-PLRIRYVRRGGDTKVAFIHGTR 63 (360)
T ss_dssp GEEEEEECGGGCEEEEETTEEEEECTTSSBEE---------------------ECSC-CSCEEEEEECSSSEEEEEEEET
T ss_pred hcccccCCCCCEEEEEECCeEEEEECCCCcEE---------------------EccC-CCCEEEEEECCCCCEEEEEEcC
Confidence 5667776 677777778899999998654321 1123 6789999999999999887655
Q ss_pred C--cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 213 G--RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 213 G--tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
. .|++||.+++ +...+.+|.+.|.+++|+|||+ |++++.|+.+++|++++......+..+
T Consensus 64 ~g~~v~v~d~~~~---------~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 126 (360)
T d1k32a3 64 EGDFLGIYDYRTG---------KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR-------- 126 (360)
T ss_dssp TEEEEEEEETTTC---------CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS--------
T ss_pred CCCEEEEEECCCC---------cEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecc--------
Confidence 4 7999999985 4567889999999999999998 789999999999999775432222111
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEe-----------CCCcEEEEeccCccEEEEEecCCceEEee
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-----------GFLSFALWDARTRELLKVFNIDGQIENRV 358 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~-----------s~~tI~lWD~~tg~~l~~l~~~~~~~~~~ 358 (838)
...+..+++++++..++.+ .+..+++||+.+++.......... ...+
T Consensus 127 ---------------------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-~~~~ 184 (360)
T d1k32a3 127 ---------------------EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH-DYAP 184 (360)
T ss_dssp ---------------------SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSB-EEEE
T ss_pred ---------------------cccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccc-cccc
Confidence 1123334445555544422 123688999999887655433322 2223
Q ss_pred ecccCcccccccceeeEEEecCCCCcceeeeeEeecCcc-eeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEE
Q 003217 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRN-AIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG 436 (838)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~-~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sg 436 (838)
.+++.....+. .+.. .. +..+..... ........+..+. .+...+..+.+++++. ++++
T Consensus 185 ~~spdg~~l~~-------~s~~--~~----~~~~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~~~~~ 245 (360)
T d1k32a3 185 AFDADSKNLYY-------LSYR--SL----DPSPDRVVLNFSFEVVSKPFVIP------LIPGSPNPTKLVPRSMTSEAG 245 (360)
T ss_dssp EECTTSCEEEE-------EESC--CC----CCEECSSSSCEECCSCBEEEEEE------SSTTCCCGGGCCCGGGSCCCC
T ss_pred cccCCCCEEEE-------EeCC--Cc----eEcccccccceeeccccceEEEe------cccCccccceECCCcCccccc
Confidence 33332221110 0000 00 000000000 0000000011110 0111111233455554 3333
Q ss_pred ECCC-----eEEEEcCCCCeeeEeecCCccEEEEEE--cC---CEEEEEeeCCeEEEEeCCCcccccccccccCEEEEE-
Q 003217 437 GANG-----LLLQWDPNGNRLQDFQYLPFAVQCLCT--FG---SQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA- 505 (838)
Q Consensus 437 s~Dg-----tIrlWD~~g~~l~tl~~H~~~V~sls~--dG---~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla- 505 (838)
..+. .+..++..+.....+..+.+.+..+.. .+ .++++++.++.|++||++++.+. .|.+.|.+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~~~~~v~~~~~ 322 (360)
T d1k32a3 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT---EVKNNLTDLRL 322 (360)
T ss_dssp CCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE---EEEEEEEEEEE
T ss_pred ceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE---EecCCcCEEEE
Confidence 3221 233444444344555666666666543 23 37888889999999999864433 3445587776
Q ss_pred -eCCCEEEEEcCCCCeeeeecCCCCCC
Q 003217 506 -VGAGYIFTLANHGGIRGWNVTSPGPL 531 (838)
Q Consensus 506 -~dg~~l~S~S~DgtIrlWdl~s~~~~ 531 (838)
+||++|++++.||+|++||+..+...
T Consensus 323 SpDG~~l~~~~~Dg~i~v~d~~~~~~~ 349 (360)
T d1k32a3 323 SADRKTVMVRKDDGKIYTFPLEKPEDE 349 (360)
T ss_dssp CTTSCEEEEEETTSCEEEEESSCTTSC
T ss_pred CCCCCEEEEEECCCeEEEEECCCCCcc
Confidence 58999999999999999999876553
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.81 E-value=5.4e-19 Score=198.43 Aligned_cols=332 Identities=8% Similarity=-0.024 Sum_probs=200.7
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~ 227 (838)
+.|++|+|||.++...... +.....|..++|||||++|++++.||+|++||+.++..
T Consensus 39 ~d~g~v~v~D~~t~~v~~~---------------------~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~-- 95 (432)
T d1qksa2 39 RDAGQIALIDGSTYEIKTV---------------------LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-- 95 (432)
T ss_dssp TTTTEEEEEETTTCCEEEE---------------------EECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--
T ss_pred cCCCEEEEEECCCCcEEEE---------------------EeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCc--
Confidence 5688999999987654321 11123689999999999999999999999999988620
Q ss_pred CCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccc
Q 003217 228 DDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (838)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 305 (838)
....++....+|.+.+.+++|||||+ | ++++.|++|+|||.++++......... .....
T Consensus 96 -~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~------------------~~~~~ 156 (432)
T d1qksa2 96 -TTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG------------------MTYDE 156 (432)
T ss_dssp -CEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCE------------------ECTTT
T ss_pred -eEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCC------------------ccccc
Confidence 11112333457888999999999998 5 689999999999998765433221110 01111
Q ss_pred eeeeecCCeEEEEEcCCCCEE-EEeC-CCcEEEEeccCccEEEEEec-CCceEEeeecccCccccc---ccceeeEEEec
Q 003217 306 FSSILTSDIKNLLSDHSRAKV-WSAG-FLSFALWDARTRELLKVFNI-DGQIENRVDMSLLPDFAM---EDEFKTKIVTS 379 (838)
Q Consensus 306 ~~~~~s~~v~~las~~~~~~V-~s~s-~~tI~lWD~~tg~~l~~l~~-~~~~~~~~~~s~~~~~~~---~~~~~~~~~s~ 379 (838)
....+.+....+++++++..+ ++.. .+.|.+||..+++.+++... .+.....+.+++.....+ .....+.++..
T Consensus 157 ~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~ 236 (432)
T d1qksa2 157 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDT 236 (432)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred eeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeec
Confidence 122235566677777777654 4444 36899999998876554332 233223445555443221 01111111111
Q ss_pred CCCCccee-------------eeeEe-e-cCcceeeec-CCcEEEEec--cCccccCCCceEEEEEcCCCc-EEEEECCC
Q 003217 380 SKKDKAQS-------------SFGFF-Q-RSRNAIMGA-ADAVRRVAA--KGGFGDDNRRTEALTTSIDGM-IWTGGANG 440 (838)
Q Consensus 380 ~~~~~~~~-------------s~~~~-~-~~~~~~~g~-~~~v~~v~~--~g~~~~~~~~v~ala~S~dg~-l~Sgs~Dg 440 (838)
. ..+... ...+. + .+......+ .++...++. ......+..++...++++++. +++++.++
T Consensus 237 ~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~ 315 (432)
T d1qksa2 237 K-EGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPN 315 (432)
T ss_dssp T-TTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTT
T ss_pred c-cceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCC
Confidence 0 000000 00010 0 011111111 133332222 123334566788889999876 78999999
Q ss_pred eEEEEcCCCCeeeEeecCCccEEEEE-EcCCEEEEEeeCCeEEEEeCCCcccccccccccCEEEEEe--CCCEEEEEc--
Q 003217 441 LLLQWDPNGNRLQDFQYLPFAVQCLC-TFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV--GAGYIFTLA-- 515 (838)
Q Consensus 441 tIrlWD~~g~~l~tl~~H~~~V~sls-~dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~--dg~~l~S~S-- 515 (838)
++++|+... +..|.....+++ +||+.+++|+.|+++++||... ...+..|...|.++++ ||++++...
T Consensus 316 ~~~lw~~~~-----~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~--~~~l~~~~~~v~~~~fS~DG~~v~~S~~~ 388 (432)
T d1qksa2 316 SQYLYVDAT-----LNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAE--WAGITEGQPRVVQGEFNKDGTEVWFSVWN 388 (432)
T ss_dssp CSEEEEECT-----TCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHH--HHTCCSSCCEEEEEEECTTSSEEEEEEEC
T ss_pred ccceeeccc-----CCCCCCeeeEEEEEechhhcccccCCceEeccccc--ccccCCCCCcEEEeEECCCCCEEEEEEec
Confidence 999998632 122332222232 7999999999999999999741 1334467778888874 888775332
Q ss_pred ---CCCCeeeeecCCCC
Q 003217 516 ---NHGGIRGWNVTSPG 529 (838)
Q Consensus 516 ---~DgtIrlWdl~s~~ 529 (838)
.|+.|+|||..+..
T Consensus 389 ~~~~~g~i~i~D~~T~k 405 (432)
T d1qksa2 389 GKDQESALVVVDDKTLE 405 (432)
T ss_dssp CTTSCCEEEEEETTTTE
T ss_pred CCCCCCcEEEEECCCce
Confidence 46789999977653
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=2.9e-18 Score=178.80 Aligned_cols=248 Identities=8% Similarity=-0.020 Sum_probs=169.0
Q ss_pred eeEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 003217 134 FLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (838)
Q Consensus 134 ~~~~l~~~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~D 212 (838)
.+++|+.+. |++ +.|++|++||+.+.. ..| .+.|.|++++++ +.++|++.|
T Consensus 15 ~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~~------------------------~~h-~~~V~~~~~~~~-~~~~s~s~D 66 (287)
T d1pgua2 15 GITALTVNP--LISGSYDGRIMEWSSSSMH------------------------QDH-SNLIVSLDNSKA-QEYSSISWD 66 (287)
T ss_dssp CEEEEETTT--TEEEETTSCEEETTTTEEE------------------------CCC-CSCEEEEECCST-TCCEEEETT
T ss_pred ceEEEEECc--EEEEeCCCeEEEEECCCCC------------------------CCC-CCCEEEEEecCC-CeEEEEeec
Confidence 455666544 555 669999999986521 123 678999999865 568999999
Q ss_pred CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEee
Q 003217 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (838)
Q Consensus 213 GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (838)
++||+|++... . +...+..+++++++.++..+.++.+.+|+..++.....+..
T Consensus 67 ~~v~~w~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 119 (287)
T d1pgua2 67 DTLKVNGITKH------------E---FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL------------ 119 (287)
T ss_dssp TEEEETTEEEE------------E---CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC------------
T ss_pred ccccccccccc------------c---cccceeeeeeccCCceEEEeecccceeeeccceeeeeeccc------------
Confidence 99999987652 1 13356788899999876666777888998866443221110
Q ss_pred ceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-C-CcEEEEeccCccEEEEEecCCceEEeeecccCccccccc
Q 003217 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-F-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (838)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~ 370 (838)
.....++ .+.+..++.++ + +.+++|++.+.+....+...
T Consensus 120 ------------------~~~~~~~--~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~------------------- 160 (287)
T d1pgua2 120 ------------------NSPGSAV--SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP------------------- 160 (287)
T ss_dssp ------------------SSCEEEE--EECSSEEEEEETTTSCEEEEETTEEEEEEECSSC-------------------
T ss_pred ------------------cceeeee--eccCcceeeeccccceeeeeeccccceeeeeeec-------------------
Confidence 1112222 22344444443 3 47999998765543332110
Q ss_pred ceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc-------CccccCCCceEEEEEcCCC-----------c
Q 003217 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-------GGFGDDNRRTEALTTSIDG-----------M 432 (838)
Q Consensus 371 ~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~-------g~~~~~~~~v~ala~S~dg-----------~ 432 (838)
.......+.|.+++..+++|..++..+++.. ..+..|...|.+++++|++ .
T Consensus 161 -----------~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~ 229 (287)
T d1pgua2 161 -----------LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL 229 (287)
T ss_dssp -----------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCE
T ss_pred -----------cCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCe
Confidence 0112234556666666777877776666641 2345678889999988754 4
Q ss_pred EEEEECCCeEEEEcC-C-CCeeeEeecCCccEEEEEE-cCCEEEEEeeCCeEEEEeC
Q 003217 433 IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDL 486 (838)
Q Consensus 433 l~Sgs~DgtIrlWD~-~-g~~l~tl~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~ 486 (838)
+++|+.|++|++||+ + +++++.+.+|...|+++++ ++..|++++.|++|++||+
T Consensus 230 l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 230 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp EEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred eEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence 889999999999998 5 5788888999999999975 3457999999999999985
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.80 E-value=5.5e-18 Score=188.85 Aligned_cols=321 Identities=10% Similarity=0.003 Sum_probs=176.5
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~ 227 (838)
+.|++|+|||+++.+.... +.+...+..++|||||++|++++.||+|++||+.++.+
T Consensus 39 ~~dg~v~vwD~~t~~~~~~---------------------l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~-- 95 (426)
T d1hzua2 39 RDAGQIALVDGDSKKIVKV---------------------IDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEP-- 95 (426)
T ss_dssp TTTTEEEEEETTTCSEEEE---------------------EECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--
T ss_pred cCCCEEEEEECCCCcEEEE---------------------EeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCce--
Confidence 4589999999987654321 11134689999999999999999999999999998731
Q ss_pred CCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccc
Q 003217 228 DDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (838)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 305 (838)
.....+....+|.+.+.+++|+|||+ | ++++.++++++||..+.........+.. ....
T Consensus 96 -~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~------------------~~~~ 156 (426)
T d1hzua2 96 -TKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM------------------TVDT 156 (426)
T ss_dssp -EEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE------------------CSSS
T ss_pred -eEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC------------------Cccc
Confidence 00011233457888999999999998 5 4677899999999987543322211100 1111
Q ss_pred eeeeecCCeEEEEEcCCCCEEEEeCC--CcEEEEeccCccEEEE-EecCCceEEeeecccCcccccccceeeEEEecCCC
Q 003217 306 FSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKV-FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (838)
Q Consensus 306 ~~~~~s~~v~~las~~~~~~V~s~s~--~tI~lWD~~tg~~l~~-l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~ 382 (838)
....+.+....++.++++..++.... +.+.+++..++..+.. ...++.......+++..... .+....
T Consensus 157 ~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~a~~~- 227 (426)
T d1hzua2 157 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYF--------MTAANN- 227 (426)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEE--------EEEETT-
T ss_pred eeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEE--------Eeeeec-
Confidence 12222444556666666665554332 3455555554432211 11122211122222211110 000000
Q ss_pred CcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCcEE--EEECCCeEEEEcC--------CCCee
Q 003217 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIW--TGGANGLLLQWDP--------NGNRL 452 (838)
Q Consensus 383 ~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~l~--Sgs~DgtIrlWD~--------~g~~l 452 (838)
... +.. +......+......+.. .+............+.++ +.+.|+.+.+|+. .++++
T Consensus 228 ~~~---~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~ 296 (426)
T d1hzua2 228 SNK---VAV-------IDSKDRRLSALVDVGKT-PHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV 296 (426)
T ss_dssp CSE---EEE-------EETTTTEEEEEEECSSC-CCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEE
T ss_pred ccc---eee-------eecccccEEEEeccCCc-ccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEe
Confidence 000 000 00000000000000000 000111111111112222 2234556666654 24788
Q ss_pred eEeecCCccEEEEE--EcCCEEEE-------EeeCCeEEEEeCC-Cccccc---------ccccccCEEEEE--eCCCEE
Q 003217 453 QDFQYLPFAVQCLC--TFGSQIWV-------GYMNGIVQVLDLE-GNLLGG---------WVAHSSPVIKMA--VGAGYI 511 (838)
Q Consensus 453 ~tl~~H~~~V~sls--~dG~~Las-------Gs~DgtIrlWD~~-g~~i~~---------l~gH~~~V~sla--~dg~~l 511 (838)
.++.+|...|.+++ +||++||+ |+.|++|+|||++ +++..+ +..|...|++++ +||+++
T Consensus 297 ~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i 376 (426)
T d1hzua2 297 AELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEV 376 (426)
T ss_dssp EEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEE
T ss_pred EEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEE
Confidence 99999999998775 58999994 5678999999986 554332 335566788877 488876
Q ss_pred -EEE----cCCCCeeeeecCCCCC
Q 003217 512 -FTL----ANHGGIRGWNVTSPGP 530 (838)
Q Consensus 512 -~S~----S~DgtIrlWdl~s~~~ 530 (838)
+|+ +.|++|++||..+...
T Consensus 377 ~vs~~~~~~~~~~i~v~D~~T~k~ 400 (426)
T d1hzua2 377 WFSVWNGKNDSSALVVVDDKTLKL 400 (426)
T ss_dssp EEEECCCTTSCCEEEEEETTTTEE
T ss_pred EEEEecCCCCCCeEEEEECCCCeE
Confidence 453 4688899999877543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.76 E-value=3.6e-16 Score=162.35 Aligned_cols=251 Identities=9% Similarity=0.075 Sum_probs=171.3
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCccC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV-WSGHRDGRIMCWKMNARLLD 226 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~L-aSGs~DGtIrvWd~~~g~~~ 226 (838)
+.|++|+|||+++.+.... +.....+..++|+|||++| ++++.+++|++||+.++
T Consensus 9 ~~~~~v~v~D~~t~~~~~~---------------------i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~--- 64 (301)
T d1l0qa2 9 SESDNISVIDVTSNKVTAT---------------------IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--- 64 (301)
T ss_dssp TTTTEEEEEETTTTEEEEE---------------------EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---
T ss_pred CCCCEEEEEECCCCeEEEE---------------------EECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC---
Confidence 4578999999987653321 1112356789999999987 57778999999999987
Q ss_pred CCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceecc
Q 003217 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (838)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 304 (838)
+.+.++..|.. +.+++|+++|. + ++++.++.+++|+..+.+....+..
T Consensus 65 -----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 114 (301)
T d1l0qa2 65 -----NVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT------------------------ 114 (301)
T ss_dssp -----EEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------------------------
T ss_pred -----ceeeeeecccc-ccccccccccccccccccccceeeecccccceeeeeccc------------------------
Confidence 66777777764 57899999997 3 5778899999999976543222111
Q ss_pred ceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCC
Q 003217 305 GFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (838)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~ 382 (838)
.....++++++++..++.+. +.++.+|+..++..+..+..+.
T Consensus 115 ------~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 158 (301)
T d1l0qa2 115 ------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR------------------------------ 158 (301)
T ss_dssp ------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS------------------------------
T ss_pred ------cccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCC------------------------------
Confidence 22345566677777655443 4678899998887765543211
Q ss_pred CcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEEC-CCeEEEEcCC-CCeeeEeecCC
Q 003217 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NGLLLQWDPN-GNRLQDFQYLP 459 (838)
Q Consensus 383 ~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~-DgtIrlWD~~-g~~l~tl~~H~ 459 (838)
.+..+++++++. +++++. ++.+.+|+.. .+....+..+.
T Consensus 159 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (301)
T d1l0qa2 159 --------------------------------------SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA 200 (301)
T ss_dssp --------------------------------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred --------------------------------------CceEEEeeccccceeeecccccccccccccceeeeecccccC
Confidence 122345666665 555554 4667788874 45555555444
Q ss_pred ccEEEE--EEcCCEEEEEee---CCeEEEEeCC-CcccccccccccCEEEEE--eCCCEE-EEEcCCCCeeeeecCCC
Q 003217 460 FAVQCL--CTFGSQIWVGYM---NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYI-FTLANHGGIRGWNVTSP 528 (838)
Q Consensus 460 ~~V~sl--s~dG~~LasGs~---DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l-~S~S~DgtIrlWdl~s~ 528 (838)
. +..+ ..+|+.++++.. +++|++||+. ++++..+..+ ..+.+|+ +||+++ ++++.|++|++||+.+.
T Consensus 201 ~-~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 201 A-PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276 (301)
T ss_dssp E-EEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred C-cceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 3 4444 447887776654 4689999987 6777766554 4577777 478876 58889999999998654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.75 E-value=2.4e-17 Score=183.55 Aligned_cols=279 Identities=10% Similarity=-0.038 Sum_probs=171.6
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcceeeec-
Q 003217 201 EASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSL- 278 (838)
Q Consensus 201 ~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~~~~~~- 278 (838)
+.+-++++++.||+|++||+.++ +.+.++.+|. .+.+|+|||||+ |++++.|++|++||+.+++.....
T Consensus 30 ~~~~~~V~~~~dg~v~vwD~~t~--------~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~ 100 (426)
T d1hzua2 30 LPNLFSVTLRDAGQIALVDGDSK--------KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE 100 (426)
T ss_dssp GGGEEEEEETTTTEEEEEETTTC--------SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred CCeEEEEEEcCCCEEEEEECCCC--------cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEE
Confidence 34446788999999999999997 6778888875 589999999999 789999999999999876533211
Q ss_pred -CCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCceE
Q 003217 279 -KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIE 355 (838)
Q Consensus 279 -~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~ 355 (838)
.....+ ..-+..+++++++..+++++ +.++++||..+++++..+..+....
T Consensus 101 i~~~~~~--------------------------~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~ 154 (426)
T d1hzua2 101 IKIGIEA--------------------------RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV 154 (426)
T ss_dssp EECCSEE--------------------------EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS
T ss_pred EeCCCCC--------------------------cceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCc
Confidence 100000 01112233456777665543 5789999999999988876544321
Q ss_pred EeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecC-Cc-EEEEec-cC-----ccccCCCceEEEEE
Q 003217 356 NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-DA-VRRVAA-KG-----GFGDDNRRTEALTT 427 (838)
Q Consensus 356 ~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~-~~-v~~v~~-~g-----~~~~~~~~v~ala~ 427 (838)
....+....... .+.+.+++...+.... .+ +..+.. .+ ....+...+..+++
T Consensus 155 ~~~~~~~~~~~~--------------------~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (426)
T d1hzua2 155 DTQTYHPEPRVA--------------------AIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGW 214 (426)
T ss_dssp SSCCEESCCCEE--------------------EEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEE
T ss_pred cceeecCCCcee--------------------EEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeE
Confidence 111111111000 0111111111111110 11 111111 00 11234556778999
Q ss_pred cCCCc-EEEEE-CCCeEEEEcC-CCCeeeEeecC----CccEEEEEEcCC-EE--EEEeeCCeEEEEeCC--------Cc
Q 003217 428 SIDGM-IWTGG-ANGLLLQWDP-NGNRLQDFQYL----PFAVQCLCTFGS-QI--WVGYMNGIVQVLDLE--------GN 489 (838)
Q Consensus 428 S~dg~-l~Sgs-~DgtIrlWD~-~g~~l~tl~~H----~~~V~sls~dG~-~L--asGs~DgtIrlWD~~--------g~ 489 (838)
+|+++ ++++. .+..+.+|+. +++.+..+... ......+...+. .+ ++.+.|+.+.+|+.. ++
T Consensus 215 ~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~ 294 (426)
T d1hzua2 215 DSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK 294 (426)
T ss_dssp CTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTS
T ss_pred CCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccce
Confidence 99998 44444 5677999999 67777666532 222222333333 22 233458899999853 35
Q ss_pred ccccccccccCEEEEE--eCCCEEE-------EEcCCCCeeeeecCCCCCCchh
Q 003217 490 LLGGWVAHSSPVIKMA--VGAGYIF-------TLANHGGIRGWNVTSPGPLDSI 534 (838)
Q Consensus 490 ~i~~l~gH~~~V~sla--~dg~~l~-------S~S~DgtIrlWdl~s~~~~d~~ 534 (838)
+..++.+|...|.+++ +|+++++ +++.|++|++||+.+......+
T Consensus 295 ~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~ 348 (426)
T d1hzua2 295 KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV 348 (426)
T ss_dssp EEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred EeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEE
Confidence 6788999999999888 5788888 5678999999999887665443
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.73 E-value=7.1e-17 Score=172.11 Aligned_cols=320 Identities=12% Similarity=0.064 Sum_probs=177.7
Q ss_pred CCC-cCcccccCCCcccccCcccccCCCCCCCceeecCCCCCccccCceeEEEEec--CCEEEE-ecCC--CEEEEeCCC
Q 003217 87 SSS-LPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCT--EEQLWA-GGEN--GLRVWNLKE 160 (838)
Q Consensus 87 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~l~~-g~d~--~vrvWd~~~ 160 (838)
|+| -.++|+.++...+|-.++... +.+.+ +|+ ..++.++.+ ++.|+. +.+. .|++||+++
T Consensus 10 fSP~dG~~~a~~~~g~v~v~d~~~~------~~~~~-~~~-------~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~ 75 (360)
T d1k32a3 10 FSPLDGDLIAFVSRGQAFIQDVSGT------YVLKV-PEP-------LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT 75 (360)
T ss_dssp EEECGGGCEEEEETTEEEEECTTSS------BEEEC-SCC-------SCEEEEEECSSSEEEEEEEETTEEEEEEEETTT
T ss_pred ccCCCCCEEEEEECCeEEEEECCCC------cEEEc-cCC-------CCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC
Confidence 555 566776555434544433221 11222 343 235555554 445554 4443 799999976
Q ss_pred CccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc
Q 003217 161 LYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH 240 (838)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH 240 (838)
..... +. .+ ...|.+++|+|+|++|++++.|+.+++|+++++ +....+..|
T Consensus 76 ~~~~~------------------~~--~~-~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 126 (360)
T d1k32a3 76 GKAEK------------------FE--EN-LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG--------KPTVIERSR 126 (360)
T ss_dssp CCEEE------------------CC--CC-CCSEEEEEECTTSSEEEEEETTSEEEEEETTTC--------CEEEEEECS
T ss_pred CcEEE------------------ee--CC-CceEEeeeecccccccceecccccccccccccc--------ceeeeeecc
Confidence 43221 11 12 678999999999999999999999999999987 566778899
Q ss_pred cccEEEEEEecCCC-EEE----------eeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeee
Q 003217 241 RGPVLSLCISSYGD-LWS----------GSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSI 309 (838)
Q Consensus 241 ~~~V~slafs~dG~-L~S----------gS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~ 309 (838)
...+.+++|+|||+ |+. ++.++.+++|++.+++... +..+
T Consensus 127 ~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~---------------------------- 177 (360)
T d1k32a3 127 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTE---------------------------- 177 (360)
T ss_dssp SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCS----------------------------
T ss_pred cccccchhhccceeeeeeeccccccceeeccccceeeeccccCceee-eccc----------------------------
Confidence 99999999999998 542 4456679999997643221 1110
Q ss_pred ecCCeEEEEEcCCCCEEEEeC-CCcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceee
Q 003217 310 LTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSS 388 (838)
Q Consensus 310 ~s~~v~~las~~~~~~V~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s 388 (838)
...+..++.++++..|+.++ +..+++||........ . .......+.+......... ++..........
T Consensus 178 -~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~-------~s~~~~~~~~~~ 246 (360)
T d1k32a3 178 -NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSF--E-VVSKPFVIPLIPGSPNPTK-------LVPRSMTSEAGE 246 (360)
T ss_dssp -SSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEEC--C-SCBEEEEEESSTTCCCGGG-------CCCGGGSCCCCC
T ss_pred -ccccccccccCCCCEEEEEeCCCceEcccccccceee--c-cccceEEEecccCccccce-------ECCCcCcccccc
Confidence 12344566677777777665 5788899987655321 0 0100011111110000000 000000000000
Q ss_pred eeEeecCcceeeecCCcEEEEec-cC---ccccCCCceEEEEEcCCC---c-EEEEECCCeEEEEcCCCCeeeEeecCCc
Q 003217 389 FGFFQRSRNAIMGAADAVRRVAA-KG---GFGDDNRRTEALTTSIDG---M-IWTGGANGLLLQWDPNGNRLQDFQYLPF 460 (838)
Q Consensus 389 ~~~~~~~~~~~~g~~~~v~~v~~-~g---~~~~~~~~v~ala~S~dg---~-l~Sgs~DgtIrlWD~~g~~l~tl~~H~~ 460 (838)
.. ..+....+..+.. .+ .+..+...+..+.+...+ . +++++.++.|++||+++..+..+ .+
T Consensus 247 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~ 315 (360)
T d1k32a3 247 YD--------LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV---KN 315 (360)
T ss_dssp CC--------CTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE---EE
T ss_pred ee--------ecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEe---cC
Confidence 00 0000000000000 00 001111222233333332 2 56788899999999965444444 34
Q ss_pred cEEEE--EEcCCEEEEEeeCCeEEEEeCC-CcccccccccccC
Q 003217 461 AVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP 500 (838)
Q Consensus 461 ~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~ 500 (838)
.|.++ ++||++|++++.||+|++||++ +....++.-+..+
T Consensus 316 ~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~ 358 (360)
T d1k32a3 316 NLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRP 358 (360)
T ss_dssp EEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSC
T ss_pred CcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEecccc
Confidence 57666 4589999999999999999987 5555555444443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.71 E-value=2.2e-15 Score=158.43 Aligned_cols=279 Identities=11% Similarity=0.046 Sum_probs=163.6
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCccC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV-WSGHRDGRIMCWKMNARLLD 226 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~L-aSGs~DGtIrvWd~~~g~~~ 226 (838)
+.|++|+|||+++...... +....+ ...+.+++++|||++| ++++.|+.|.+||+.++
T Consensus 8 ~~d~~v~v~D~~s~~~~~~-----------------i~~~~~-~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~--- 66 (337)
T d1pbyb_ 8 ARPDKLVVIDTEKMAVDKV-----------------ITIADA-GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG--- 66 (337)
T ss_dssp ETTTEEEEEETTTTEEEEE-----------------EECTTC-TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC---
T ss_pred cCCCEEEEEECCCCeEEEE-----------------EECCCC-CCCccEEEECCCCCEEEEEECCCCeEEEEECCCC---
Confidence 5689999999987654321 100001 3356789999999987 57788999999999997
Q ss_pred CCCCcceeEEecccc-----ccEEEEEEecCCC-EEEee------------CCCcEEEEECCCcceeeecCCCceeeeEE
Q 003217 227 SDDGFGEVLSWQAHR-----GPVLSLCISSYGD-LWSGS------------EGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (838)
Q Consensus 227 ~~~~~~~~~~l~gH~-----~~V~slafs~dG~-L~SgS------------~DgtIrvWd~~~~~~~~~~~~~~~~~~~~ 288 (838)
+.+..+..|. ..+..++|+|||+ +++++ .+..+.+||..+.+....+.
T Consensus 67 -----~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------- 132 (337)
T d1pbyb_ 67 -----ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--------- 132 (337)
T ss_dssp -----CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE---------
T ss_pred -----cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc---------
Confidence 5566655543 3445789999998 55554 35677777776543221110
Q ss_pred EEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCCceEEeeecccCccccc
Q 003217 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (838)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (838)
....+..+++++++..+++++ ..+.+||..++++..++..+.... ....++......
T Consensus 133 ---------------------~~~~~~~~~~s~dg~~l~~~~-~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 189 (337)
T d1pbyb_ 133 ---------------------APRQITMLAWARDGSKLYGLG-RDLHVMDPEAGTLVEDKPIQSWEA-ETYAQPDVLAVW 189 (337)
T ss_dssp ---------------------CCSSCCCEEECTTSSCEEEES-SSEEEEETTTTEEEEEECSTTTTT-TTBCCCBCCCCC
T ss_pred ---------------------ccCCceEEEEcCCCCEEEEEc-CCcceeeeecCcEEEEeecCCccc-cceecCCcceee
Confidence 012344567778888887765 457899999999888775432210 000111000000
Q ss_pred ccceeeEEEecCCCCccee---eeeEeecCcceeeecCC-cEEEEec-cC-----ccccCCCceEEEEEcCCCcEEEEEC
Q 003217 369 EDEFKTKIVTSSKKDKAQS---SFGFFQRSRNAIMGAAD-AVRRVAA-KG-----GFGDDNRRTEALTTSIDGMIWTGGA 438 (838)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~---s~~~~~~~~~~~~g~~~-~v~~v~~-~g-----~~~~~~~~v~ala~S~dg~l~Sgs~ 438 (838)
.......... ....++.. ....+... ++..+.. .+ .+..+...+..+++++++..+.+.
T Consensus 190 ---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 258 (337)
T d1pbyb_ 190 ---------NQHESSGVMATPFYTARKDID-PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA- 258 (337)
T ss_dssp ---------CCCTTTTEEEEEEEEEBTTSC-TTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-
T ss_pred ---------ccccccceeeeeeeeeeeccc-eeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc-
Confidence 0000000000 00000000 00011111 1111111 11 122344556677888888765444
Q ss_pred CCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccccccc
Q 003217 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (838)
Q Consensus 439 DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~g 496 (838)
+++|++||+ +++++..+. +...+.++++ ||++|++|+.|++|+|||++ ++.+.++..
T Consensus 259 ~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 259 YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 688999999 678887775 4566777754 79999999999999999987 666665543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.65 E-value=5.8e-15 Score=155.82 Aligned_cols=155 Identities=10% Similarity=0.061 Sum_probs=95.3
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEE
Q 003217 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV-WSGHRDGRIMCWK 219 (838)
Q Consensus 142 ~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~L-aSGs~DGtIrvWd 219 (838)
++.|++ +.|++|.|||+++.+.... + .+.+...+.+++|+|||++| ++++.++.|++||
T Consensus 8 ~~~l~~~~~~~~v~v~D~~t~~~~~t-----------------~--~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d 68 (346)
T d1jmxb_ 8 HEYMIVTNYPNNLHVVDVASDTVYKS-----------------C--VMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGID 68 (346)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEE-----------------E--ECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CcEEEEEcCCCEEEEEECCCCCEEEE-----------------E--EcCCCCCcceEEECCCCCEEEEEECCCCcEEEEe
Confidence 334554 5689999999987654321 1 11113456789999999987 5667899999999
Q ss_pred CCCCccCCCCCcceeEEecc------ccccEEEEEEecCCC-EEEee------------CCCcEEEEECCCcceeeecCC
Q 003217 220 MNARLLDSDDGFGEVLSWQA------HRGPVLSLCISSYGD-LWSGS------------EGGGIKIWPWEAIEKALSLKP 280 (838)
Q Consensus 220 ~~~g~~~~~~~~~~~~~l~g------H~~~V~slafs~dG~-L~SgS------------~DgtIrvWd~~~~~~~~~~~~ 280 (838)
+.++ +....+.. +...+..++|+|||+ |+.++ .+..+++|+..+++....+..
T Consensus 69 ~~t~--------~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 140 (346)
T d1jmxb_ 69 LDTC--------KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT 140 (346)
T ss_dssp TTTT--------EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred CccC--------eeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEe
Confidence 9987 44444422 223466899999998 55443 477788888765432111100
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEeccCccEEEEEecCC
Q 003217 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDG 352 (838)
Q Consensus 281 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~tg~~l~~l~~~~ 352 (838)
+.. ...+..+..++++ +++..+ ..+.+||+.+++.+..+..+.
T Consensus 141 -------------------~~~--------~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 183 (346)
T d1jmxb_ 141 -------------------FPM--------PRQVYLMRAADDG-SLYVAG-PDIYKMDVKTGKYTVALPLRN 183 (346)
T ss_dssp -------------------EEC--------CSSCCCEEECTTS-CEEEES-SSEEEECTTTCCEEEEECSTT
T ss_pred -------------------eec--------cCceEEEEecCCC-EEEEeC-CcceEEEccCCCEEEEEecCC
Confidence 000 0112223333333 343333 458899999999988876543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.64 E-value=4.5e-15 Score=165.96 Aligned_cols=306 Identities=9% Similarity=-0.009 Sum_probs=176.6
Q ss_pred eEEEEe--cCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCce-eeecCCCCeEEEEEcCCCCEE-EEE
Q 003217 135 LRTIVC--TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFK-ESVKGVSSVMCMVGDEASGVV-WSG 209 (838)
Q Consensus 135 ~~~l~~--~~~~l~~-g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~~~V~~la~s~dg~~L-aSG 209 (838)
...++. +++.+++ +.|++|++||+.+...... .... ...+ .+.+.+.+|+|||++| +++
T Consensus 64 ~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~---------------~~i~~~~~~-~~~~~s~~~SpDG~~l~vs~ 127 (432)
T d1qksa2 64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV---------------AEIKIGSEA-RSIETSKMEGWEDKYAIAGA 127 (432)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE---------------EEEECCSEE-EEEEECCSTTCTTTEEEEEE
T ss_pred eeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE---------------EEEecCCCC-CCeEEecccCCCCCEEEEEc
Confidence 334444 4667876 5689999999976432110 0000 0011 4467777889999975 788
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecc-----------ccccEEEEEEecCCC--EEEeeCCCcEEEEECCCcceee
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQA-----------HRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKAL 276 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l~g-----------H~~~V~slafs~dG~--L~SgS~DgtIrvWd~~~~~~~~ 276 (838)
+.|++|++||.+++ +....+.+ +.+.+.+++++++|. +++.+.++.|.+|+..+.+...
T Consensus 128 ~~~~~v~i~d~~t~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~ 199 (432)
T d1qksa2 128 YWPPQYVIMDGETL--------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK 199 (432)
T ss_dssp EETTEEEEEETTTC--------CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE
T ss_pred CCCCeEEEEeCccc--------cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcce
Confidence 89999999999987 44444443 345677899999997 3688889999999986543211
Q ss_pred ecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEecCCce
Q 003217 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQI 354 (838)
Q Consensus 277 ~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~~~~~ 354 (838)
. ..+ .. ......+++++++..+++++ ...+.+||..+++.+..+......
T Consensus 200 ~--------~~i-------------~~-------g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~ 251 (432)
T d1qksa2 200 T--------TEI-------------SA-------ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 251 (432)
T ss_dssp E--------EEE-------------EC-------CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred E--------EEE-------------cc-------cCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccc
Confidence 0 000 00 11245677888888766665 357899999999887765432110
Q ss_pred E---EeeecccCccc-----ccccceeeEEEecCCCC-----cceeeeeEeecCcceeeecCCcEEEEeccCccccCCCc
Q 003217 355 E---NRVDMSLLPDF-----AMEDEFKTKIVTSSKKD-----KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (838)
Q Consensus 355 ~---~~~~~s~~~~~-----~~~~~~~~~~~s~~~~~-----~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~ 421 (838)
. ....+...... ....+..+.++...... .......+.+.+....++..+...++|....+..+...
T Consensus 252 ~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~ 331 (432)
T d1qksa2 252 PHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEI 331 (432)
T ss_dssp BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHH
T ss_pred cccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCe
Confidence 0 00000000000 00001111122111000 01112223333344444443333334433333333333
Q ss_pred eEEEEEcCCCc-EEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEEE--cCCEEEEEe-----eCCeEEEEeCC-Cccc
Q 003217 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGY-----MNGIVQVLDLE-GNLL 491 (838)
Q Consensus 422 v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls~--dG~~LasGs-----~DgtIrlWD~~-g~~i 491 (838)
..++++ ||+. +++++.|+++++||+ ++.+ +..|...|.++++ ||++||++. .+|.|+|||.+ +++.
T Consensus 332 ~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~ 407 (432)
T d1qksa2 332 SGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 407 (432)
T ss_dssp HTCEEE-EEGGGCCCSSSCCCEEEECHHHHHT---CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred eeEEEE-EechhhcccccCCceEecccccccc---cCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEE
Confidence 334555 7776 899999999999998 5533 2356777887754 899887764 46899999987 5665
Q ss_pred ccccc
Q 003217 492 GGWVA 496 (838)
Q Consensus 492 ~~l~g 496 (838)
..+++
T Consensus 408 ~~i~~ 412 (432)
T d1qksa2 408 HVIKD 412 (432)
T ss_dssp EEECC
T ss_pred eEecC
Confidence 65554
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.61 E-value=7.4e-15 Score=154.35 Aligned_cols=283 Identities=8% Similarity=0.002 Sum_probs=157.3
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc--ccccEEEEEEecCCC-E-EEeeCCCcEEEEECCCcceeeecC
Q 003217 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA--HRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLK 279 (838)
Q Consensus 204 ~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~g--H~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~~~~~~~ 279 (838)
+++++++.|++|++||+.++ +.+.++.. +...+.+++|+|||+ | ++++.|+.|++||+.+++...++.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~--------~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~ 73 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKM--------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT--------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred eEEEEEcCCCEEEEEECCCC--------eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence 47899999999999999987 55666643 445688999999998 5 578899999999998865433322
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-------------CCcEEEEeccCccEEE
Q 003217 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-------------FLSFALWDARTRELLK 346 (838)
Q Consensus 280 ~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-------------~~tI~lWD~~tg~~l~ 346 (838)
....... ......+++++++..++.+. ...+.+||..+++++.
T Consensus 74 ~~~~~~~------------------------~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (337)
T d1pbyb_ 74 LSTPEER------------------------VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp CCBTTEE------------------------EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred cCCCccc------------------------ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEE
Confidence 1100000 00111244455555554442 3468899999999988
Q ss_pred EEecCCceEEeeecccCccccc--ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCc--e
Q 003217 347 VFNIDGQIENRVDMSLLPDFAM--EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR--T 422 (838)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~--v 422 (838)
.+.....+ ..+.+++.....+ ..+.. ++... ..+...++.... .........++.. ++.. ...... .
T Consensus 130 ~~~~~~~~-~~~~~s~dg~~l~~~~~~~~--~~d~~-~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~---~~~~~~~~~ 200 (337)
T d1pbyb_ 130 AFEAPRQI-TMLAWARDGSKLYGLGRDLH--VMDPE-AGTLVEDKPIQS-WEAETYAQPDVLA-VWNQ---HESSGVMAT 200 (337)
T ss_dssp EEECCSSC-CCEEECTTSSCEEEESSSEE--EEETT-TTEEEEEECSTT-TTTTTBCCCBCCC-CCCC---CTTTTEEEE
T ss_pred eccccCCc-eEEEEcCCCCEEEEEcCCcc--eeeee-cCcEEEEeecCC-ccccceecCCcce-eecc---ccccceeee
Confidence 87654432 2233333322211 11111 01000 000000000000 0000000000000 0000 000000 1
Q ss_pred EEEE-EcCCCcEEEEECCCeEEEEcC-CCCeeeE-eecCCccEEEEEE--cCCEEEEEeeCCeEEEEeCC-Ccccccccc
Q 003217 423 EALT-TSIDGMIWTGGANGLLLQWDP-NGNRLQD-FQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (838)
Q Consensus 423 ~ala-~S~dg~l~Sgs~DgtIrlWD~-~g~~l~t-l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~g 496 (838)
.... .........++.++.+.+||. +++.... +..|...+.++.. ++.+++++ ++.|++||++ ++++..+ .
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~-~ 277 (337)
T d1pbyb_ 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV-P 277 (337)
T ss_dssp EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE-E
T ss_pred eeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEE-c
Confidence 1111 112222333444567999999 6765543 5556666666654 56677664 6899999998 5666655 3
Q ss_pred cccCEEEEE--eCCCEEEEEcCCCCeeeeecCCCCC
Q 003217 497 HSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 497 H~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
|...+.+|+ +||+++++++.|++|++||+.+...
T Consensus 278 ~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~ 313 (337)
T d1pbyb_ 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE
Confidence 556677777 4899999999999999999877543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.60 E-value=2.7e-15 Score=158.42 Aligned_cols=289 Identities=7% Similarity=-0.107 Sum_probs=158.4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec-cccccEEEEEEecCCC-E-EEeeCCCcEEEEECCCcc
Q 003217 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 197 la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~ 273 (838)
+++++++++|++++.|++|.+||+.++ +.+.+++ .|...+.+|+|+|||+ | ++++.+++|++||+.+++
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~--------~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~ 73 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASD--------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 73 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTT--------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCC--------CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCe
Confidence 467899999999999999999999997 6667665 4666788999999998 4 678899999999998764
Q ss_pred eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC-------------CCcEEEEecc
Q 003217 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-------------FLSFALWDAR 340 (838)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s-------------~~tI~lWD~~ 340 (838)
............. . ......+++++++..++.++ +..+.+||..
T Consensus 74 ~~~~~~~~~~~~~-------------------~----~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~ 130 (346)
T d1jmxb_ 74 NTFHANLSSVPGE-------------------V----GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA 130 (346)
T ss_dssp EEEEEESCCSTTE-------------------E----EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG
T ss_pred eeeeecccccccc-------------------c----CCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecc
Confidence 3322211100000 0 00112244555666555442 3468889988
Q ss_pred CccEEEEEecC--CceEEeeecccCcccc-cccceeeEEEecCCCCcceee---------eeEeecCcceeeec-CCcEE
Q 003217 341 TRELLKVFNID--GQIENRVDMSLLPDFA-MEDEFKTKIVTSSKKDKAQSS---------FGFFQRSRNAIMGA-ADAVR 407 (838)
Q Consensus 341 tg~~l~~l~~~--~~~~~~~~~s~~~~~~-~~~~~~~~~~s~~~~~~~~~s---------~~~~~~~~~~~~g~-~~~v~ 407 (838)
+++....+..+ +........+...... ...+.. ++... ..+.... +.+.+.+...+... ..+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (346)
T d1jmxb_ 131 DGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIY--KMDVK-TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF 207 (346)
T ss_dssp GGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEE--EECTT-TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred cceeeeEEEeeeccCceEEEEecCCCEEEEeCCcce--EEEcc-CCCEEEEEecCCCccceEEeccccEEEEEecCCCce
Confidence 87654332211 0000000011100000 000000 00000 0000000 00111111111000 00000
Q ss_pred EEeccCccccCCCceEEEEEcCCCc-EEEEECCCeEEEEcC-CCCee-eEeecCCccEEEEEE--cCCEEEEEeeCCeEE
Q 003217 408 RVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRL-QDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQ 482 (838)
Q Consensus 408 ~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs~DgtIrlWD~-~g~~l-~tl~~H~~~V~sls~--dG~~LasGs~DgtIr 482 (838)
.+. .....+.++.. +.++..++.+.+||. ++... ..+..|...+.++.. ++.+++++. ++.|+
T Consensus 208 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~ 275 (346)
T d1jmxb_ 208 SML-----------YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLA 275 (346)
T ss_dssp EEE-----------EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEE
T ss_pred Eee-----------eeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEE
Confidence 000 00111222222 455666778999999 56543 445667877777654 566777655 46899
Q ss_pred EEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeeecCCCCCCc
Q 003217 483 VLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGPLD 532 (838)
Q Consensus 483 lWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrlWdl~s~~~~d 532 (838)
+||+. ++++.... +...+.+++ +||+++++++.|++|++||+.+...+.
T Consensus 276 v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~ 327 (346)
T d1jmxb_ 276 KYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 327 (346)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred EEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEE
Confidence 99987 66666554 334577776 589999999999999999987754443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.52 E-value=7.4e-13 Score=140.91 Aligned_cols=278 Identities=9% Similarity=-0.009 Sum_probs=159.7
Q ss_pred EEEcCCCCEEEEEe-----CCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEE----------eeC
Q 003217 197 MVGDEASGVVWSGH-----RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS----------GSE 260 (838)
Q Consensus 197 la~s~dg~~LaSGs-----~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S----------gS~ 260 (838)
.+.+|||++++... .+++|.+||..++ +.+.++..+..+ .++|||||+ |+. ++.
T Consensus 7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg--------~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~ 76 (355)
T d2bbkh_ 7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG--------RVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGER 76 (355)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT--------EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEE
T ss_pred EeeCCCCCEEEEEecccCCCcCeEEEEECCCC--------cEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCC
Confidence 35578999988753 4668999999997 566677666555 799999998 653 345
Q ss_pred CCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC---CCcEEEE
Q 003217 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALW 337 (838)
Q Consensus 261 DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s---~~tI~lW 337 (838)
|+.|++||+.+++....+...... ...+ ......+++++++..++.++ +..+.+|
T Consensus 77 d~~v~v~D~~t~~~~~~~~~~~~~------------------~~~~----~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~ 134 (355)
T d2bbkh_ 77 TDYVEVFDPVTLLPTADIELPDAP------------------RFLV----GTYPWMTSLTPDGKTLLFYQFSPAPAVGVV 134 (355)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCC------------------CCCB----SCCGGGEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCEEEEEECCCCCEEEEEecCCcc------------------eeec----CCCCceEEEecCCCeeEEecCCCCceeeee
Confidence 889999999876533221110000 0000 01122355667777665543 3578899
Q ss_pred eccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeec-CCc-EEEEeccCcc
Q 003217 338 DARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADA-VRRVAAKGGF 415 (838)
Q Consensus 338 D~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~-~~~-v~~v~~~g~~ 415 (838)
|..+++.+.++.........+... ...+.+.+++...++.. ..+ +.........
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~ 190 (355)
T d2bbkh_ 135 DLEGKAFKRMLDVPDCYHIFPTAP------------------------DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH 190 (355)
T ss_dssp ETTTTEEEEEEECCSEEEEEEEET------------------------TEEEEEETTSCEEEEECCSSSCCEEEECCCCS
T ss_pred ecCCCcEeeEEecCCcceEeecCC------------------------cceEEEcCCCCEEEEEecCCCeEEEEeccccc
Confidence 999999988776543221100000 00112222222212111 111 1111110001
Q ss_pred ccCCCceEEEEE-cCCCcEEEEECCCeEEEEcCC-CC--eeeEeecCC------------ccEEEEEEcCCEEEEEeeC-
Q 003217 416 GDDNRRTEALTT-SIDGMIWTGGANGLLLQWDPN-GN--RLQDFQYLP------------FAVQCLCTFGSQIWVGYMN- 478 (838)
Q Consensus 416 ~~~~~~v~ala~-S~dg~l~Sgs~DgtIrlWD~~-g~--~l~tl~~H~------------~~V~sls~dG~~LasGs~D- 478 (838)
..+...+...++ .+++.++.++.++.+.+|+.. ++ ++.....|. .....+++++.+++....+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~ 270 (355)
T d2bbkh_ 191 PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR 270 (355)
T ss_dssp CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccC
Confidence 112222233333 455568888999999999994 43 222222221 2234556688887776544
Q ss_pred ---------CeEEEEeCC-CcccccccccccCEEEEE--eCCC--EEEEEcCCCCeeeeecCCCCCC
Q 003217 479 ---------GIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAG--YIFTLANHGGIRGWNVTSPGPL 531 (838)
Q Consensus 479 ---------gtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~--~l~S~S~DgtIrlWdl~s~~~~ 531 (838)
..|.+||+. ++.+..+..+ ..+.+++ +||+ .+++++.|++|++||+++...+
T Consensus 271 ~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~ 336 (355)
T d2bbkh_ 271 DEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 336 (355)
T ss_dssp CTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CceeecCCCCeEEEEeCCCCcEEEEecCC-CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEE
Confidence 479999987 6777766543 4466766 5777 3568889999999998876543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.52 E-value=2.5e-12 Score=132.67 Aligned_cols=230 Identities=11% Similarity=0.124 Sum_probs=149.1
Q ss_pred EEEe--cCCEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEE-EEeC
Q 003217 137 TIVC--TEEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW-SGHR 211 (838)
Q Consensus 137 ~l~~--~~~~l~~g--~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~La-SGs~ 211 (838)
.++. +++.||++ .++.|++||+.+...... +.....+..++++++++.++ ++..
T Consensus 36 ~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (301)
T d1l0qa2 36 GAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT---------------------VPAGSSPQGVAVSPDGKQVYVTNMA 94 (301)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE---------------------EECSSSEEEEEECTTSSEEEEEETT
T ss_pred EEEEeCCCCEEEEEECCCCEEEEEECCCCceeee---------------------eeccccccccccccccccccccccc
Confidence 4444 45677753 478999999987543211 11123567899999998655 5567
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-E-EEeeCCCcEEEEECCCcceeeecCCCceeeeEEE
Q 003217 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (838)
Q Consensus 212 DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~ 289 (838)
++.+++|+..++ +....+.. ...+.+++|+|||. + ++++.|+++++|+..+......+..
T Consensus 95 ~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 156 (301)
T d1l0qa2 95 SSTLSVIDTTSN--------TVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV--------- 156 (301)
T ss_dssp TTEEEEEETTTT--------EEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---------
T ss_pred cceeeecccccc--------eeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc---------
Confidence 778999999886 44454444 45678899999998 4 5788899999999976433221110
Q ss_pred EeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC--CcEEEEeccCccEEEEEecCCceEEeeecccCcccc
Q 003217 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (838)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (838)
......++..+++..++.+.. ..+.+|+....+....+..+.
T Consensus 157 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 200 (301)
T d1l0qa2 157 ---------------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA--------------- 200 (301)
T ss_dssp ---------------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---------------
T ss_pred ---------------------CCCceEEEeeccccceeeecccccccccccccceeeeecccccC---------------
Confidence 123455666667776666542 456677766655433332111
Q ss_pred cccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCCCc-EEEEE---CCCeEE
Q 003217 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG---ANGLLL 443 (838)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~dg~-l~Sgs---~DgtIr 443 (838)
.+..+++++++. ++.++ .+++|+
T Consensus 201 -----------------------------------------------------~~~~~~~~~~g~~~~v~~~~~~~~~v~ 227 (301)
T d1l0qa2 201 -----------------------------------------------------APSGIAVNPEGTKAYVTNVDKYFNTVS 227 (301)
T ss_dssp -----------------------------------------------------EEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred -----------------------------------------------------Ccceeeccccccccccccccceeeeee
Confidence 122345666665 43333 346899
Q ss_pred EEcC-CCCeeeEeecCCccEEEEE--EcCCEEE-EEeeCCeEEEEeCC-Cccccccc
Q 003217 444 QWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIW-VGYMNGIVQVLDLE-GNLLGGWV 495 (838)
Q Consensus 444 lWD~-~g~~l~tl~~H~~~V~sls--~dG~~La-sGs~DgtIrlWD~~-g~~i~~l~ 495 (838)
+||+ +++++.++..+. .+.+++ +||++|+ +++.|++|++||++ ++++.++.
T Consensus 228 v~D~~t~~~~~~~~~~~-~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 228 MIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp EEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eeecCCCeEEEEEcCCC-CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 9999 788888876544 467765 4889875 66679999999987 67766653
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.51 E-value=5.5e-12 Score=135.33 Aligned_cols=275 Identities=7% Similarity=-0.109 Sum_probs=155.8
Q ss_pred CCCeEEEEEcCCCCEEEEE-----eCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEe------
Q 003217 191 VSSVMCMVGDEASGVVWSG-----HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSG------ 258 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSG-----s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~Sg------ 258 (838)
.+++.+++++|||+.++.. +.++.+.+||.+++ +.+.++.+|..+ .++|||||+ |+++
T Consensus 20 ~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg--------~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~ 89 (373)
T d2madh_ 20 DGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG--------SILGHVNGGFLP--NPVAAHSGSEFALASTSFSR 89 (373)
T ss_pred CCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC--------CEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCc
Confidence 6789999999999998864 23457889998887 566677776654 799999998 5554
Q ss_pred ----eCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEE--EEeC-C
Q 003217 259 ----SEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKV--WSAG-F 331 (838)
Q Consensus 259 ----S~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V--~s~s-~ 331 (838)
+.+++|++||+.+++.............. . ......+++++++..+ +... +
T Consensus 90 ~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~--------------------~--~~~~~~~~~s~dg~~~~v~~~~~~ 147 (373)
T d2madh_ 90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD--------------------V--GPYSWMNANTPNNADLLFFQFAAG 147 (373)
T ss_pred ccccccceEEEEEECCCCcEEEEEecCCcceeE--------------------e--ccCCCcEEEEeCCCcEEEEEEcCC
Confidence 45788999999876543222211111000 0 1111223344444433 3322 3
Q ss_pred CcEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEec
Q 003217 332 LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA 411 (838)
Q Consensus 332 ~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~ 411 (838)
..+.+|+..+++.+......... .+++..... .+....++...++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~----~~s~~g~~~------------------------------~v~~~~dg~~~~~~ 193 (373)
T d2madh_ 148 PAVGLVVQGGSSDDQLLSSPTCY----HIHPGAPST------------------------------FYLLCAQGGLAKTD 193 (373)
T ss_pred CceEEeeccCCeEEEEeccceeE----EEecCCCcE------------------------------EEEEcCCCeEEEEE
Confidence 46788888887765544322111 111111100 01111111111110
Q ss_pred -----------cCc-cccCCCceEEEEEcCCCcEEEEECCCeEEEEcCC-CCe--eeEeecCCcc------------EEE
Q 003217 412 -----------KGG-FGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPN-GNR--LQDFQYLPFA------------VQC 464 (838)
Q Consensus 412 -----------~g~-~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~~-g~~--l~tl~~H~~~------------V~s 464 (838)
... ..........+.+++++.++..+.++++.+|+.. +.. +..+..+... ..+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (373)
T d2madh_ 194 HAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVA 273 (373)
T ss_pred cCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeE
Confidence 000 0111122334567777777777788889999984 322 2222222111 112
Q ss_pred EEEcCC----------EEEEEeeCCeEEEEeCC-CcccccccccccCEEEEEe--CCCE--EEEEcCCCCeeeeecCCCC
Q 003217 465 LCTFGS----------QIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGY--IFTLANHGGIRGWNVTSPG 529 (838)
Q Consensus 465 ls~dG~----------~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~--l~S~S~DgtIrlWdl~s~~ 529 (838)
+++++. .+++...++.|.+||+. ++.+..+. |...+.++++ ||+. +++++.|++|++||+.+..
T Consensus 274 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~ 352 (373)
T d2madh_ 274 YLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence 233343 44556667899999987 66666553 5566777774 7874 4689999999999998765
Q ss_pred CCc
Q 003217 530 PLD 532 (838)
Q Consensus 530 ~~d 532 (838)
.+.
T Consensus 353 ~~~ 355 (373)
T d2madh_ 353 QDQ 355 (373)
T ss_pred EEE
Confidence 543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.47 E-value=2.1e-11 Score=130.72 Aligned_cols=294 Identities=10% Similarity=-0.064 Sum_probs=156.3
Q ss_pred ecCCEEEEe------cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe---
Q 003217 140 CTEEQLWAG------GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH--- 210 (838)
Q Consensus 140 ~~~~~l~~g------~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs--- 210 (838)
.+++++|+. .++.|.+||.++.+.... +. .+....++|+|||++|++++
T Consensus 30 pdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~---------------------~~-~~~~~~~a~SpDG~~l~va~~~~ 87 (373)
T d2madh_ 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH---------------------VN-GGFLPNPVAAHSGSEFALASTSF 87 (373)
T ss_pred CCCCEEEEEcccccCCCceEEEEECCCCCEEEE---------------------Ee-CCCCccEEEcCCCCEEEEEeecC
Confidence 456677753 245788999876543321 12 22233689999999999875
Q ss_pred -------CCCcEEEEECCCCccCCCCCcceeEEeccccccE-------EEEEEecCCC-E--EEeeCCCcEEEEECCCcc
Q 003217 211 -------RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPV-------LSLCISSYGD-L--WSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 211 -------~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V-------~slafs~dG~-L--~SgS~DgtIrvWd~~~~~ 273 (838)
.|+.|++||..++ +....+..|.... ..++|++||+ + +....++.+.+|+..+.+
T Consensus 88 ~~~~~~~~~~~v~v~D~~t~--------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~ 159 (373)
T d2madh_ 88 SRIAKGKRTDYVEVFDPVTF--------LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS 159 (373)
T ss_pred CcccccccceEEEEEECCCC--------cEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCe
Confidence 4678999999987 5555555555443 4578889887 3 344556788888875532
Q ss_pred eeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEE--EEeCCCcEEEEeccCccEEEEEecC
Q 003217 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKV--WSAGFLSFALWDARTRELLKVFNID 351 (838)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V--~s~s~~tI~lWD~~tg~~l~~l~~~ 351 (838)
.... .....++++.+++..+ ....++++.+||..+++........
T Consensus 160 ~~~~---------------------------------~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~ 206 (373)
T d2madh_ 160 DDQL---------------------------------LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGA 206 (373)
T ss_pred EEEE---------------------------------eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeee
Confidence 1100 0112233344444433 2334678999999998887665432
Q ss_pred CceE------EeeecccCccccc-ccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEecc-Cc---cc-cCC
Q 003217 352 GQIE------NRVDMSLLPDFAM-EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-GG---FG-DDN 419 (838)
Q Consensus 352 ~~~~------~~~~~s~~~~~~~-~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~-g~---~~-~~~ 419 (838)
.... ............. ..+.++..+.... .... .. ..+............. +. .. ...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d 277 (373)
T d2madh_ 207 MLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISA-AGAT-NK-------APIDALSGGRKADTWRPGGWQQVAYLKS 277 (373)
T ss_pred ccccCccceeeeEEECCCceEEEecCCceEEEEEcCC-CeEE-EE-------EeeccccCcEEeeeeccCcceeeEEecC
Confidence 1100 0000000000000 0000000111000 0000 00 0000000001000000 00 00 000
Q ss_pred CceEEEEEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccEEEEE--EcCCE--EEEEeeCCeEEEEeCC-Cccccc
Q 003217 420 RRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQ--IWVGYMNGIVQVLDLE-GNLLGG 493 (838)
Q Consensus 420 ~~v~ala~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V~sls--~dG~~--LasGs~DgtIrlWD~~-g~~i~~ 493 (838)
.....+...++..+++...+++|.+||. +++.+..+. +...+.+++ +||++ +++++.|++|+|||++ |+.+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~ 356 (373)
T d2madh_ 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence 1111122223334566777889999999 788888775 455677665 58884 3577889999999997 899999
Q ss_pred ccccccCEEEEEe
Q 003217 494 WVAHSSPVIKMAV 506 (838)
Q Consensus 494 l~gH~~~V~sla~ 506 (838)
+.+|......|+.
T Consensus 357 ~~~~g~~P~~l~~ 369 (373)
T d2madh_ 357 TVELGSGPQVLSV 369 (373)
T ss_pred ECCCCCCCcEEEE
Confidence 9887776666654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=3.3e-11 Score=126.26 Aligned_cols=144 Identities=14% Similarity=0.215 Sum_probs=89.4
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCccC
Q 003217 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH-RDGRIMCWKMNARLLD 226 (838)
Q Consensus 148 g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs-~DGtIrvWd~~~g~~~ 226 (838)
+.|++|+|||+........ . ....+.+.|.+|+|+|||++|++++ .|+.|++|++...
T Consensus 11 ~~~~~I~v~~~~~~~~l~~-----------------~-~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~--- 69 (333)
T d1ri6a_ 11 PESQQIHVWNLNHEGALTL-----------------T-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD--- 69 (333)
T ss_dssp GGGTEEEEEEECTTSCEEE-----------------E-EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT---
T ss_pred CCCCcEEEEEEcCCCCeEE-----------------E-EEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCC---
Confidence 3588999999864221110 1 1111256789999999999986555 5899999999875
Q ss_pred CCCCcceeEEec---cccccEEEEEEecCCC-EEEee-CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccce
Q 003217 227 SDDGFGEVLSWQ---AHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHL 301 (838)
Q Consensus 227 ~~~~~~~~~~l~---gH~~~V~slafs~dG~-L~SgS-~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~ 301 (838)
....++. .+...+..|+|+|||+ |++++ .+++|++|+........... ...+
T Consensus 70 -----~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~-----------------~~~~- 126 (333)
T d1ri6a_ 70 -----DGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD-----------------VVEG- 126 (333)
T ss_dssp -----TCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEE-----------------EECC-
T ss_pred -----CCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceeccc-----------------ccCC-
Confidence 2222222 2345577899999998 66665 57899999875532111100 0000
Q ss_pred eccceeeeecCCeEEEEEcCCCCEEEEeCC--CcEEEEeccCccE
Q 003217 302 SVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTREL 344 (838)
Q Consensus 302 ~~~~~~~~~s~~v~~las~~~~~~V~s~s~--~tI~lWD~~tg~~ 344 (838)
...+..+.+++++..++.+.. ..|.+|+..+...
T Consensus 127 ---------~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~ 162 (333)
T d1ri6a_ 127 ---------LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 162 (333)
T ss_dssp ---------CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred ---------CccceEEEeeecceeeeccccccceeeEEEeccCCc
Confidence 122334556677776666553 4688998876543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.34 E-value=6.7e-11 Score=125.37 Aligned_cols=104 Identities=7% Similarity=-0.068 Sum_probs=70.6
Q ss_pred ecCCEEEEe------cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE----
Q 003217 140 CTEEQLWAG------GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG---- 209 (838)
Q Consensus 140 ~~~~~l~~g------~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG---- 209 (838)
.++.++|+. .+++|.+||.++...... +. .+.+..++|||||++|+..
T Consensus 11 pdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~---------------------~~-~g~~~~~a~SpDg~~l~v~~~~~ 68 (355)
T d2bbkh_ 11 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM---------------------ID-GGFLPNPVVADDGSFIAHASTVF 68 (355)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE---------------------EE-ECSSCEEEECTTSSCEEEEEEEE
T ss_pred CCCCEEEEEecccCCCcCeEEEEECCCCcEEEE---------------------EE-CCCCCceEEcCCCCEEEEEeCCC
Confidence 366677763 355799999987543321 22 2233468999999988864
Q ss_pred ------eCCCcEEEEECCCCccCCCCCcceeEEecccc-------ccEEEEEEecCCC-EE--EeeCCCcEEEEECCCcc
Q 003217 210 ------HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-------GPVLSLCISSYGD-LW--SGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 210 ------s~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~-------~~V~slafs~dG~-L~--SgS~DgtIrvWd~~~~~ 273 (838)
..|+.|++||+.++ +....+..|. .....++|+++|+ ++ +.+.+..+++|+..+++
T Consensus 69 ~~~~~g~~d~~v~v~D~~t~--------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~ 140 (355)
T d2bbkh_ 69 SRIARGERTDYVEVFDPVTL--------LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA 140 (355)
T ss_dssp EETTEEEEEEEEEEECTTTC--------CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred ccccccCCCCEEEEEECCCC--------CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCc
Confidence 45889999999987 4444443222 1235679999998 44 45677899999997754
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=2.4e-10 Score=119.43 Aligned_cols=271 Identities=10% Similarity=0.083 Sum_probs=144.2
Q ss_pred EEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EE-EeeCCCcEEEEECCCcceeeecCCCc
Q 003217 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGGIKIWPWEAIEKALSLKPEE 282 (838)
Q Consensus 205 ~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~DgtIrvWd~~~~~~~~~~~~~~ 282 (838)
.+++++.|++|++|+++... . ........|.+.|.+|+|||||+ |+ +++.|++|++|++......+....
T Consensus 6 v~v~~~~~~~I~v~~~~~~~-----~-l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~-- 77 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEG-----A-LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA-- 77 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTS-----C-EEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE--
T ss_pred EEEECCCCCcEEEEEEcCCC-----C-eEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEee--
Confidence 45788899999999997641 0 12233447889999999999998 64 666799999999976433222110
Q ss_pred eeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CCcEEEEeccCccEEEEEec--CCceEEee
Q 003217 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNI--DGQIENRV 358 (838)
Q Consensus 283 ~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~tI~lWD~~tg~~l~~l~~--~~~~~~~~ 358 (838)
+.. .......+++++++..|++++ +.++.+|+............ +......+
T Consensus 78 -----------------~~~-------~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v 133 (333)
T d1ri6a_ 78 -----------------ESA-------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSA 133 (333)
T ss_dssp -----------------EEE-------CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCC
T ss_pred -----------------ecc-------cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEE
Confidence 000 012344578888888888775 35788998877665433221 11111111
Q ss_pred ecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCc-EEEEeccCccccCCCceEEEEEcCCCcE--EE
Q 003217 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAKGGFGDDNRRTEALTTSIDGMI--WT 435 (838)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~-v~~v~~~g~~~~~~~~v~ala~S~dg~l--~S 435 (838)
.+++.....+ .... .... +..+ ...... ...................+++++++.. ++
T Consensus 134 ~~s~d~~~~~--------~~~~-~~~~---i~~~-------~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~ 194 (333)
T d1ri6a_ 134 NISPDNRTLW--------VPAL-KQDR---ICLF-------TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV 194 (333)
T ss_dssp EECTTSSEEE--------EEEG-GGTE---EEEE-------EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE
T ss_pred Eeeecceeee--------cccc-ccce---eeEE-------EeccCCcceeeeceeeeeecCCCccEEEEeccceeEEee
Confidence 2222211110 0000 0000 0000 000000 0000000001112234567889998874 34
Q ss_pred EECCCeEEEEcCC--CC---eeeEeec------CCccEE--EEEEcCCEEEEEe-eCCeEEEEeCC-Cccccccc---cc
Q 003217 436 GGANGLLLQWDPN--GN---RLQDFQY------LPFAVQ--CLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWV---AH 497 (838)
Q Consensus 436 gs~DgtIrlWD~~--g~---~l~tl~~------H~~~V~--sls~dG~~LasGs-~DgtIrlWD~~-g~~i~~l~---gH 497 (838)
....+...+|+.. .. ...++.. ...... .+++||++++... .++++.+|++. ........ .+
T Consensus 195 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (333)
T d1ri6a_ 195 NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT 274 (333)
T ss_dssp ETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred ccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCC
Confidence 4456678888763 22 1222211 122333 3456888666554 57899999976 22222222 23
Q ss_pred ccCEEEEE--eCCCEEEEE-cCCCCeeeeecC
Q 003217 498 SSPVIKMA--VGAGYIFTL-ANHGGIRGWNVT 526 (838)
Q Consensus 498 ~~~V~sla--~dg~~l~S~-S~DgtIrlWdl~ 526 (838)
...+.+|+ +||++|+.+ +.+++|++|++.
T Consensus 275 ~~~p~~~a~spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 275 ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp SSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence 34455555 689987755 567899999763
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.09 E-value=7.7e-10 Score=119.02 Aligned_cols=282 Identities=10% Similarity=-0.084 Sum_probs=147.5
Q ss_pred CCCeEEEEEcCCCCEE---EEEeCCCcEE--EEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEE-------
Q 003217 191 VSSVMCMVGDEASGVV---WSGHRDGRIM--CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS------- 257 (838)
Q Consensus 191 ~~~V~~la~s~dg~~L---aSGs~DGtIr--vWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S------- 257 (838)
.++...++..++++.. ++.+.+|+.+ +||..++ +.+....+|..+ .++|+|||+ |+.
T Consensus 19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~--------~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~ 88 (368)
T d1mdah_ 19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCG--------VTLGHSLGAFLS--LAVAGHSGSDFALASTSFAR 88 (368)
T ss_dssp CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTT--------EEEEEEEECTTC--EEEECTTSSCEEEEEEEETT
T ss_pred CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCC--------cEEEEEeCCCCC--cceECCCCCEEEEEcccCcc
Confidence 3455555667788753 3345667655 5577776 556666666655 589999998 654
Q ss_pred ---eeCCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeC--CC
Q 003217 258 ---GSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FL 332 (838)
Q Consensus 258 ---gS~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s--~~ 332 (838)
|+.|++|++||..+++....+........ .. -.....+++++++..++.+. ++
T Consensus 89 ~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~---------------~~-------g~~p~~~a~SpDGk~l~va~~~~~ 146 (368)
T d1mdah_ 89 SAKGKRTDYVEVFDPVTFLPIADIELPDAPRF---------------SV-------GPRVHIIGNCASSACLLFFLFGSS 146 (368)
T ss_dssp TTSSSEEEEEEEECTTTCCEEEEEEETTSCSC---------------CB-------SCCTTSEEECTTSSCEEEEECSSS
T ss_pred ccccccCCeEEEEECCCCcEeeeecCCcccee---------------cc-------cCCccceEECCCCCEEEEEeCCCC
Confidence 34588999999987653322210000000 00 00112356677887776654 47
Q ss_pred cEEEEeccCccEEEEEecCCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeec-CCcEEEE-e
Q 003217 333 SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADAVRRV-A 410 (838)
Q Consensus 333 tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~-~~~v~~v-~ 410 (838)
++.+||+.++++++.+..+......+.... . .+.+.+++....+.. ..+.... .
T Consensus 147 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~--------------------~v~~~~Dg~~~~~~~~~~~~~~~~~ 202 (368)
T d1mdah_ 147 AAAGLSVPGASDDQLTKSASCFHIHPGAAA----T--------------------HYLGSCPASLAASDLAAAPAAAGIV 202 (368)
T ss_dssp CEEEEEETTTEEEEEEECSSCCCCEEEETT----E--------------------EECCCCTTSCEEEECCSSCCCCEEC
T ss_pred eEEEEECCCCcEeEEeeccCcceEccCCCc----e--------------------EEEEcCCCCEEEEEecCCceeeeee
Confidence 899999999999887755432110000000 0 000111111111100 0000000 0
Q ss_pred ccCccccCCCceEEEEEcCCCcEEEEECCCeEEEEcCCCCeee---E------------eecCCccEEEEEEcCCEEEEE
Q 003217 411 AKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQ---D------------FQYLPFAVQCLCTFGSQIWVG 475 (838)
Q Consensus 411 ~~g~~~~~~~~v~ala~S~dg~l~Sgs~DgtIrlWD~~g~~l~---t------------l~~H~~~V~sls~dG~~LasG 475 (838)
....+..+...+..+.+.+++.++... ++.+.+++..+..+. . +..+......+++++..++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~ 281 (368)
T d1mdah_ 203 GAQCTGAQNCSSQAAQANYPGMLVWAV-ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL 281 (368)
T ss_dssp CCCSCTTSCBCSCCEEETTTTEEEECB-SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred ecccccccccceeecccccCcEEEEec-CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEE
Confidence 001111222233344555666543322 334555554221111 1 111222345667788877665
Q ss_pred eeC---------CeEEEEeCC-CcccccccccccCEEEEE--eCCCE--EEEEcCCCCeeeeecCCCCC
Q 003217 476 YMN---------GIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGY--IFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 476 s~D---------gtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~--l~S~S~DgtIrlWdl~s~~~ 530 (838)
..+ ..|++||.. ++.+..+..+ ..+.+++ +||+. +++.+.|++|++||..+...
T Consensus 282 ~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~ 349 (368)
T d1mdah_ 282 TVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp EEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred ecCCCceeecCCceEEEEECCCCcEeEEecCC-CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence 432 369999987 6777776543 4566666 58863 45888999999999877543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.00 E-value=9.6e-09 Score=114.07 Aligned_cols=107 Identities=12% Similarity=0.008 Sum_probs=78.8
Q ss_pred CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEEe---------CC
Q 003217 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH---------RD 212 (838)
Q Consensus 142 ~~~l~~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSGs---------~D 212 (838)
+++++...|++|.+||+.+.....- .....|.. + ..+|.++.|||||+.|+.++ .+
T Consensus 27 d~~~~~~~~~~~~~~~~~t~~~~~~------------~~~~~~~~--~-~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~ 91 (470)
T d2bgra1 27 DHEYLYKQENNILVFNAEYGNSSVF------------LENSTFDE--F-GHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (470)
T ss_dssp SSEEEEESSSCEEEEETTTCCEEEE------------ECTTTTTT--S-SSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred CCEEEEEcCCcEEEEECCCCCEEEE------------Echhhhhh--c-cCccceeEECCCCCEEEEEECCcceeeeccC
Confidence 3455556688999999987653211 00111211 1 45799999999999999885 35
Q ss_pred CcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCcc
Q 003217 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (838)
Q Consensus 213 GtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~~ 273 (838)
+.+.+||++++ ....+..|.+.+..+.|||||+ |+. ..|+.+.+|+..+++
T Consensus 92 ~~~~l~d~~~~---------~~~~l~~~~~~~~~~~~SPDG~~ia~-~~~~~l~~~~~~~g~ 143 (470)
T d2bgra1 92 ASYDIYDLNKR---------QLITEERIPNNTQWVTWSPVGHKLAY-VWNNDIYVKIEPNLP 143 (470)
T ss_dssp EEEEEEETTTT---------EECCSSCCCTTEEEEEECSSTTCEEE-EETTEEEEESSTTSC
T ss_pred ceEEEEECCCC---------cccccccCCccccccccccCcceeeE-eecccceEEECCCCc
Confidence 78899999985 4566888999999999999998 555 457789999988754
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.88 E-value=1.3e-08 Score=109.11 Aligned_cols=70 Identities=6% Similarity=-0.126 Sum_probs=52.2
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEECCCCccCCCCCcceeEEeccccc-------cEEEEEEecCCC-EEE
Q 003217 196 CMVGDEASGVVWSGH----------RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG-------PVLSLCISSYGD-LWS 257 (838)
Q Consensus 196 ~la~s~dg~~LaSGs----------~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~-------~V~slafs~dG~-L~S 257 (838)
.++++|||+.|+..+ .|++|++||..++ +....+..|.. ....++|||||+ |+.
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~--------~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~v 140 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--------LPIADIELPDAPRFSVGPRVHIIGNCASSACLLF 140 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--------CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEE
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCC--------cEeeeecCCccceecccCCccceEECCCCCEEEE
Confidence 478999999998754 4788999999987 45554443322 123689999998 665
Q ss_pred ee-CCCcEEEEECCCcc
Q 003217 258 GS-EGGGIKIWPWEAIE 273 (838)
Q Consensus 258 gS-~DgtIrvWd~~~~~ 273 (838)
++ .+++|.+||+.+++
T Consensus 141 a~~~~~~v~~~d~~~~~ 157 (368)
T d1mdah_ 141 FLFGSSAAAGLSVPGAS 157 (368)
T ss_dssp EECSSSCEEEEEETTTE
T ss_pred EeCCCCeEEEEECCCCc
Confidence 54 67999999998754
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.43 E-value=5.3e-07 Score=98.95 Aligned_cols=100 Identities=14% Similarity=0.086 Sum_probs=63.7
Q ss_pred EEcCCCcEEEEECCCeEEEEcC-CCCeeeEeecCCccE-EEEEEcCCEEEE-EeeCCeEEEEeCCC--c-------cccc
Q 003217 426 TTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAV-QCLCTFGSQIWV-GYMNGIVQVLDLEG--N-------LLGG 493 (838)
Q Consensus 426 a~S~dg~l~Sgs~DgtIrlWD~-~g~~l~tl~~H~~~V-~sls~dG~~Las-Gs~DgtIrlWD~~g--~-------~i~~ 493 (838)
++++||+.+..+.++.+.+++. ..+.+.++..+.++- ..+++||+++++ |..+++|.|||++. + ...+
T Consensus 224 ~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~ 303 (441)
T d1qnia2 224 AAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDT 303 (441)
T ss_dssp HHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGG
T ss_pred EEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceE
Confidence 3567777544455778888887 456677766544431 245779998765 55799999999752 1 1233
Q ss_pred ccccccC---EEEEEeCCC--EEEEEcCCCCeeeeec
Q 003217 494 WVAHSSP---VIKMAVGAG--YIFTLANHGGIRGWNV 525 (838)
Q Consensus 494 l~gH~~~---V~sla~dg~--~l~S~S~DgtIrlWdl 525 (838)
+.++... ....++|++ ...|...|..|..|++
T Consensus 304 ~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~ 340 (441)
T d1qnia2 304 IVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI 340 (441)
T ss_dssp EEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred EEeecccccCcccceecCCceEEEcccccceEEEecc
Confidence 3333322 122345554 4568899999999997
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.35 E-value=7.5e-05 Score=77.17 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=54.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEE-EeeCCCcEEEEECCC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWEA 271 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~-SgS~DgtIrvWd~~~ 271 (838)
.+..++++|||+++++...+++|..|+.++. ...+..+.+.+.+++|++||+|+ +...++.+.+|+...
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~----------~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~ 98 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN----------QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 98 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC----------EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC----------EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecc
Confidence 5778999999999999999999988887653 23344456789999999999964 666778888887644
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.33 E-value=2.6e-05 Score=85.47 Aligned_cols=113 Identities=5% Similarity=0.007 Sum_probs=82.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeE-----EeccccccEEEEEEecCCC-EEEee---------C
Q 003217 196 CMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVL-----SWQAHRGPVLSLCISSYGD-LWSGS---------E 260 (838)
Q Consensus 196 ~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~-----~l~gH~~~V~slafs~dG~-L~SgS---------~ 260 (838)
.+.+.+++++++. .|+.|.+||+.++ ++.. ++..|...|.++.|||||+ |+.++ .
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~--------~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~ 90 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYG--------NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY 90 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTC--------CEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCC--------CEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeecc
Confidence 3667788888765 5889999999997 3333 3456678999999999998 66654 3
Q ss_pred CCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCCCcEEEEecc
Q 003217 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDAR 340 (838)
Q Consensus 261 DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~~tI~lWD~~ 340 (838)
++.+.|||+++++. ..+.. + ...+....++++|.+|+...+..+.+|+..
T Consensus 91 ~~~~~l~d~~~~~~-~~l~~-------------------~----------~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~ 140 (470)
T d2bgra1 91 TASYDIYDLNKRQL-ITEER-------------------I----------PNNTQWVTWSPVGHKLAYVWNNDIYVKIEP 140 (470)
T ss_dssp EEEEEEEETTTTEE-CCSSC-------------------C----------CTTEEEEEECSSTTCEEEEETTEEEEESST
T ss_pred CceEEEEECCCCcc-ccccc-------------------C----------CccccccccccCcceeeEeecccceEEECC
Confidence 56788999977532 11111 1 234566778888988888888899999999
Q ss_pred CccEEEEE
Q 003217 341 TRELLKVF 348 (838)
Q Consensus 341 tg~~l~~l 348 (838)
+++..+..
T Consensus 141 ~g~~~~~t 148 (470)
T d2bgra1 141 NLPSYRIT 148 (470)
T ss_dssp TSCCEECC
T ss_pred CCceeeee
Confidence 99876543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.33 E-value=1.9e-07 Score=102.52 Aligned_cols=54 Identities=6% Similarity=0.012 Sum_probs=40.8
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCccCCCCCcceeEEe-ccccccEEEEEEecCCC
Q 003217 193 SVMCMVGDEASGVVWSGH-RDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD 254 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs-~DGtIrvWd~~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~ 254 (838)
...+..++|||++|+... .+++|.+||+.+. +....+ ..+...+.+++|+|||+
T Consensus 73 ~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~--------k~~~ii~iP~g~gphgi~~spdg~ 128 (441)
T d1qnia2 73 HISMTDGRYDGKYLFINDKANTRVARIRLDIM--------KTDKITHIPNVQAIHGLRLQKVPK 128 (441)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTT--------EEEEEEECTTCCCEEEEEECCSSB
T ss_pred CcceecccCCCCEEEEEcCCCCEEEEEECCCC--------cEeeEEecCCCCCccceEEeccCC
Confidence 455566688999997665 6778999999986 343333 34667899999999997
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.25 E-value=0.0006 Score=69.25 Aligned_cols=108 Identities=8% Similarity=0.092 Sum_probs=74.2
Q ss_pred eEEEEEcCCCcEE-EEECCCeEEEEcCCCCeeeEee--cCCccEEEEEEc--CCEEEEEe-eCCeEEEEeCCCccccccc
Q 003217 422 TEALTTSIDGMIW-TGGANGLLLQWDPNGNRLQDFQ--YLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGWV 495 (838)
Q Consensus 422 v~ala~S~dg~l~-Sgs~DgtIrlWD~~g~~l~tl~--~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~~l~ 495 (838)
...++++++|.++ +....+.|+++|.+|+.+.++. ++......|+.| |+.+++-+ .++.|.+++.+|+++.++.
T Consensus 159 ~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~ 238 (279)
T d1q7fa_ 159 PNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALE 238 (279)
T ss_dssp EEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEE
T ss_pred cceeeeccceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEe
Confidence 3456778888865 4445678999999999888874 344556777764 66444422 3557999999999877765
Q ss_pred ccc--cCEEEEE--eCCCEEEEEcCCCCeeeeecCCCCC
Q 003217 496 AHS--SPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGP 530 (838)
Q Consensus 496 gH~--~~V~sla--~dg~~l~S~S~DgtIrlWdl~s~~~ 530 (838)
... ...+.|+ .||. ++.++.++.|++|......|
T Consensus 239 ~~~~~~~p~~vav~~dG~-l~V~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 239 SKVKHAQCFDVALMDDGS-VVLASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp ESSCCSCEEEEEEETTTE-EEEEETTTEEEEEECSCCCC
T ss_pred CCCCCCCEeEEEEeCCCc-EEEEeCCCeEEEEEeeeecC
Confidence 432 3456666 4665 45556789999999766544
|
| >d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: Sphingomyelin phosphodiesterase-like domain: Sphingomyelin phosphodiesterase C species: Bacillus cereus [TaxId: 1396]
Probab=98.23 E-value=1.7e-06 Score=88.55 Aligned_cols=71 Identities=18% Similarity=0.293 Sum_probs=49.5
Q ss_pred cccCCCceeEEEEEEcCeEEEEEeccccCCcc------hHHHHHHHHHHHHHhcCcCCCCCcccccccCCCceeeecccC
Q 003217 672 RAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE------AVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRST 745 (838)
Q Consensus 672 ~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~------~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 745 (838)
....++|++.+.+.+.+..|+++|+||.++.. ....|...++.+...+.=.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~----------------------- 176 (299)
T d2ddra1 120 DNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNK----------------------- 176 (299)
T ss_dssp --CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred ccccceeEEEEEEecCCeEEEEEEccccCCCCccchhhhHHHHHHHHHHHhhhhhhh-----------------------
Confidence 35678999999999999999999999998743 2344666666665544100
Q ss_pred CCCCCCcccCCCCcCcccEEEEeccceeeecC
Q 003217 746 NPLSGLTVEGVPELSEADMVIFLGDFNYRLDG 777 (838)
Q Consensus 746 ~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~ 777 (838)
.....+.|+++||||.+-..
T Consensus 177 ------------~~~~~~~vi~~GDfN~~~~~ 196 (299)
T d2ddra1 177 ------------NIPNNEYVLIGGDMNVNKIN 196 (299)
T ss_dssp ------------TCCTTSCEEEEEECCCCCTT
T ss_pred ------------cccccceEEEEecCCCCccc
Confidence 01234579999999998654
|
| >d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: Sphingomyelin phosphodiesterase-like domain: Sphingomyelin phosphodiesterase C species: Listeria ivanovii [TaxId: 1638]
Probab=98.20 E-value=1.9e-06 Score=87.99 Aligned_cols=48 Identities=13% Similarity=0.154 Sum_probs=36.2
Q ss_pred CcccCCCceeEEEEEEcCeEEEEEeccccCCcc------hHHHHHHHHHHHHHh
Q 003217 671 GRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE------AVNRRNADFDHVYRT 718 (838)
Q Consensus 671 ~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~------~~~~Rn~d~~~I~~~ 718 (838)
.....+||.+.+++.+.+..++|+|+||.++.. ....|..+++.+...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~~r~~~~~~~~~~ 172 (293)
T d1zwxa1 119 ADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTF 172 (293)
T ss_dssp GGGGBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccceEEEEEEecCCceEEEEEeeeeccCCccchhHHHHHHHHHHHHhhhh
Confidence 345678999999999999999999999988743 234466666665544
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.69 E-value=0.0073 Score=62.26 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=44.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEee
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS 259 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS 259 (838)
.+-.++||++|++.++-...++|..|+.+++ .....+.........|+|++||+|+.++
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~--------~~~~~~~~~~~~p~gla~~~dG~l~va~ 99 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETK--------EIKRPFVSHKANPAAIKIHKDGRLFVCY 99 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTC--------CEEEEEECSSSSEEEEEECTTSCEEEEE
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCC--------eEEEEEeCCCCCeeEEEECCCCCEEEEe
Confidence 3467899999998888889999999998875 2233334445667899999999976544
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.53 E-value=0.04 Score=56.42 Aligned_cols=55 Identities=9% Similarity=0.105 Sum_probs=39.8
Q ss_pred EEEEEcCCCcEEEEE-CCCeEEEEcCCCCeeeEeec------CCccEEEEEEc--CCEEEEEee
Q 003217 423 EALTTSIDGMIWTGG-ANGLLLQWDPNGNRLQDFQY------LPFAVQCLCTF--GSQIWVGYM 477 (838)
Q Consensus 423 ~ala~S~dg~l~Sgs-~DgtIrlWD~~g~~l~tl~~------H~~~V~sls~d--G~~LasGs~ 477 (838)
..++++.+|.||.+. .++.|.++|.+|+.+.++.. +...++|+++. +..+++.+.
T Consensus 231 dGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 231 DSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred eeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 357788999987665 57899999999998888763 34456787763 456665543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.48 E-value=0.013 Score=58.21 Aligned_cols=104 Identities=11% Similarity=-0.003 Sum_probs=62.8
Q ss_pred EEEEEcCCCcEEEE-ECCCeEEEEcCCCCeeeEee-cCCccEEEEEEc--CCEEEEEeeCCeEEEEeCCCccccccc-cc
Q 003217 423 EALTTSIDGMIWTG-GANGLLLQWDPNGNRLQDFQ-YLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEGNLLGGWV-AH 497 (838)
Q Consensus 423 ~ala~S~dg~l~Sg-s~DgtIrlWD~~g~~l~tl~-~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~g~~i~~l~-gH 497 (838)
..++++++|.++.+ ..++.|..+|.++....++. ........|+.| |...++-...+.|..++..+.....+. ..
T Consensus 143 ~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~ 222 (260)
T d1rwia_ 143 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG 222 (260)
T ss_dssp CEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCS
T ss_pred ceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCC
Confidence 45778888887554 45677999999765554443 344556777775 555555555788998988755433332 22
Q ss_pred ccCEEEEEe--CCCEEEEEcCCCCeeeeecCCC
Q 003217 498 SSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 498 ~~~V~sla~--dg~~l~S~S~DgtIrlWdl~s~ 528 (838)
-....+|+. +|...++-..++.| +.+.+.
T Consensus 223 ~~~P~~i~~d~~g~l~vad~~~~rI--~~i~~~ 253 (260)
T d1rwia_ 223 LNTPLAVAVDSDRTVYVADRGNDRV--VKLTSL 253 (260)
T ss_dssp CCCEEEEEECTTCCEEEEEGGGTEE--EEECCC
T ss_pred CCCeEEEEEeCCCCEEEEECCCCEE--EEEeCC
Confidence 245567776 45555554555544 444443
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.48 E-value=0.033 Score=54.42 Aligned_cols=57 Identities=9% Similarity=-0.062 Sum_probs=41.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EE
Q 003217 191 VSSVMCMVGDEASGVVWSGHRDG---RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW 256 (838)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGs~DG---tIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~ 256 (838)
...+..-+|||||+.||-..... .+.+.+..++ ....+..+.+.+....++|+|+ ++
T Consensus 38 ~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~spdg~~i~ 98 (269)
T d2hqsa1 38 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---------AVRQVASFPRHNGAPAFSPDGSKLA 98 (269)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC---------CEEEEECCSSCEEEEEECTTSSEEE
T ss_pred CCceeeeEECCCCCEEEEEEeeccCcceeeeecccC---------ceeEEeeeecccccceecCCCCeee
Confidence 55788899999999998655443 3445555553 3445556788889999999998 44
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.47 E-value=0.036 Score=56.22 Aligned_cols=225 Identities=13% Similarity=0.100 Sum_probs=117.0
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEeeCCCcEEEEECCCcceee
Q 003217 198 VGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKAL 276 (838)
Q Consensus 198 a~s~-dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~~~~~~~ 276 (838)
.+++ ++.+.|+=-..++|..||.+++. ...+. ....+.++++.++|.||.|+.+ .|.++|..+++...
T Consensus 24 ~wd~~~~~l~wvDi~~~~I~r~d~~~g~---------~~~~~-~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~ 92 (295)
T d2ghsa1 24 TFDPASGTAWWFNILERELHELHLASGR---------KTVHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTL 92 (295)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTTTE---------EEEEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEE
T ss_pred eEECCCCEEEEEECCCCEEEEEECCCCe---------EEEEE-CCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeE
Confidence 4665 56677887678899999998862 22221 2457889999999998877775 57888987654321
Q ss_pred ecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEcCCCCEEEEeCC------CcEEEEeccCccEEEEEec
Q 003217 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF------LSFALWDARTRELLKVFNI 350 (838)
Q Consensus 277 ~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~V~s~s~------~tI~lWD~~tg~~l~~l~~ 350 (838)
-...+.. . +......+..+++| .+|.+.. ..-.+|.+..++....+..
T Consensus 93 l~~~~~~------------------~-------~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~ 146 (295)
T d2ghsa1 93 HAELESD------------------L-------PGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD 146 (295)
T ss_dssp EECSSTT------------------C-------TTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEETTEEEEEEEE
T ss_pred EeeeecC------------------C-------CcccceeeEECCCC-CEEEEeccccccccceeEeeecCCcEEEEeec
Confidence 1111000 0 01113344556555 4555531 1345666666765444321
Q ss_pred CCceEEeeecccCcccccccceeeEEEecCCCCcceeeeeEeecCcceeeecCCcEEEEeccCccccCCCceEEEEEcCC
Q 003217 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (838)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ala~S~d 430 (838)
-. ..+.+.++..... +. +...... .+..+.+... .....+.. .+ .+ .+.+.......++++.+
T Consensus 147 ~~-~~Ng~~~s~d~~~-------l~-~~dt~~~-~I~~~~~d~~-~~~~~~~~-~~-~~----~~~~~~g~pdG~~vD~~ 209 (295)
T d2ghsa1 147 IS-IPNSICFSPDGTT-------GY-FVDTKVN-RLMRVPLDAR-TGLPTGKA-EV-FI----DSTGIKGGMDGSVCDAE 209 (295)
T ss_dssp ES-SEEEEEECTTSCE-------EE-EEETTTC-EEEEEEBCTT-TCCBSSCC-EE-EE----ECTTSSSEEEEEEECTT
T ss_pred cC-CcceeeecCCCce-------EE-Eeecccc-eeeEeeeccc-ccccccce-EE-Ee----ccCcccccccceEEcCC
Confidence 11 1111222221111 00 1111000 0000000000 00000000 00 00 01122334567888999
Q ss_pred CcEEEEE-CCCeEEEEcCCCCeeeEeecCCccEEEEEEc---CCEEEEEe
Q 003217 431 GMIWTGG-ANGLLLQWDPNGNRLQDFQYLPFAVQCLCTF---GSQIWVGY 476 (838)
Q Consensus 431 g~l~Sgs-~DgtIrlWD~~g~~l~tl~~H~~~V~sls~d---G~~LasGs 476 (838)
|.||.+. ..+.|..+|.+|+.+..+......++++++- .+.|++.+
T Consensus 210 GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 210 GHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp SCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CCEEeeeeCCCceEEecCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence 9998876 4567999999999998888766778888874 45666554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.43 E-value=0.018 Score=59.13 Aligned_cols=105 Identities=5% Similarity=-0.050 Sum_probs=61.1
Q ss_pred EEEEcCCC-----cEEE-EECCCeEEEEcC--CCCee-----eEeec-CCccEEEEEEc--CCEEEEEeeCCeEEEEeCC
Q 003217 424 ALTTSIDG-----MIWT-GGANGLLLQWDP--NGNRL-----QDFQY-LPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 424 ala~S~dg-----~l~S-gs~DgtIrlWD~--~g~~l-----~tl~~-H~~~V~sls~d--G~~LasGs~DgtIrlWD~~ 487 (838)
.+++++++ .|+. -+..+.|..+|+ .|... ..+.+ +....-.++.| |+..++....+.|.+||.+
T Consensus 176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~ 255 (314)
T d1pjxa_ 176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence 45565554 3543 345677877776 33221 11211 11223356664 6543444457899999988
Q ss_pred -CcccccccccccCEEEEEe--CCC-EEEEEcCCCCeeeeecCCC
Q 003217 488 -GNLLGGWVAHSSPVIKMAV--GAG-YIFTLANHGGIRGWNVTSP 528 (838)
Q Consensus 488 -g~~i~~l~gH~~~V~sla~--dg~-~l~S~S~DgtIrlWdl~s~ 528 (838)
++.+..+..+...+.++++ |++ ..++.+.+++|...++..+
T Consensus 256 ~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 256 GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence 4566667777778888887 444 4467777776666555443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.39 E-value=0.032 Score=57.08 Aligned_cols=65 Identities=12% Similarity=0.109 Sum_probs=48.0
Q ss_pred EEEEEcCCCcEEEEE-CCCeEEEEcCC-CCeeeEeecCCccEEEEEE--cCCEEEEEe-eCCeEEEEeCC
Q 003217 423 EALTTSIDGMIWTGG-ANGLLLQWDPN-GNRLQDFQYLPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLE 487 (838)
Q Consensus 423 ~ala~S~dg~l~Sgs-~DgtIrlWD~~-g~~l~tl~~H~~~V~sls~--dG~~LasGs-~DgtIrlWD~~ 487 (838)
..++++.+|.||.+. ..+.|.+||.+ ++.+.++..+....+++++ |++.|++.+ ..+.|...|+.
T Consensus 229 dGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 229 DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred eeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 357788999987655 56789999995 5666677766677888877 566676654 56888888864
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.23 E-value=0.12 Score=51.19 Aligned_cols=65 Identities=9% Similarity=0.033 Sum_probs=46.3
Q ss_pred eEEEEEcCCCcEEEEE--CCCeEEEEcCCCCeeeEeecCC--ccEEEEEE--cCCEEEEEeeCCeEEEEeCC
Q 003217 422 TEALTTSIDGMIWTGG--ANGLLLQWDPNGNRLQDFQYLP--FAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (838)
Q Consensus 422 v~ala~S~dg~l~Sgs--~DgtIrlWD~~g~~l~tl~~H~--~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (838)
...|+++++|.|+.+. .++.|.+++.+|+.+.++.... .....|+. +| +|++++.++.|++|.-.
T Consensus 202 P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG-~l~V~~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 202 PIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDG-SVVLASKDYRLYIYRYV 272 (279)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTT-EEEEEETTTEEEEEECS
T ss_pred CcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCC-cEEEEeCCCeEEEEEee
Confidence 3467888999977664 2447999999999888876432 24456655 55 56666789999999843
|
| >d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: DNase I-like domain: Endonuclease domain of TRAS1 retrotransposon (ORF2) species: Silkworm (Bombyx mori) [TaxId: 7091]
Probab=97.22 E-value=0.00021 Score=69.69 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=59.0
Q ss_pred eEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCCCCCE
Q 003217 554 ILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTF 633 (838)
Q Consensus 554 i~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~y 633 (838)
+-|.||||+..+.....|..++.. .++||++ |||.-.... .....+ .+..+
T Consensus 3 ~rV~~~Nv~~~~~~~~~l~~~i~~--~~~DIi~--lQE~~~~~~------------------------~~~~~~-~~~~~ 53 (228)
T d1wdua_ 3 YRVLQANLQRKKLATAELAIEAAT--RKAAIAL--IQEPYVGGA------------------------KSMKGF-RGVRV 53 (228)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHH--HTCSEEE--EESCCC------------------------------CCC-SSCEE
T ss_pred EEEEeeccCCChHHHHHHHHHHHh--cCCCEEE--EECCCcCCC------------------------Cccccc-cceEE
Confidence 467899999877666777777764 4567765 999632110 000111 01112
Q ss_pred EEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcc
Q 003217 634 ERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (838)
Q Consensus 634 ~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~ 703 (838)
.......-+.....+++++... ...... .......+.+++......++++|+|+.+...
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-----~~~~~~~~~~~i~~~~~~i~v~~~y~~~~~~ 112 (228)
T d1wdua_ 54 FQSTAQGDGTVKAAIAVFDHDL------DVIQYP-----QLTTNNIVVVGIRTRAWEITLVSYYFEPDKP 112 (228)
T ss_dssp EECCCCTTCCCCEEEEECCSSC------EEEECT-----TTCCSSEEEEEEECSSCEEEEEEEECCTTSC
T ss_pred EeccCCCCCCcceEEEEEcccc------ceeccc-----CCCCCCEEEEEEEcCCccEEEEEEEeCCccc
Confidence 2222222222233444554322 111110 1124467778888888999999999987643
|
| >d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: DNase I-like domain: Endonuclease domain of LINE-1 reverse transcriptase homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=0.00075 Score=65.94 Aligned_cols=112 Identities=14% Similarity=0.151 Sum_probs=58.1
Q ss_pred eEEEEEEeCCCCC--CcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhccCCCCcchhhHHHHHhhhcCCCC
Q 003217 554 ILAGTWNVGQGRA--SQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGS 631 (838)
Q Consensus 554 i~~~twNv~~~~~--~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~ 631 (838)
|-+.||||++-+- ....+.+||.. .+||| |+|||+-....-. .+ ... .....
T Consensus 6 ~kv~s~Nv~g~~~~~~~~~i~~~i~~--~~~DI--i~LQE~~~~~~~~----~~--~~~----------------~~~~~ 59 (236)
T d1vyba_ 6 ITILTLNINGLNSAIKRHRLASWIKS--QDPSV--CCIQETHLTCRDT----HR--LKI----------------KGWRK 59 (236)
T ss_dssp EEEEEEECSCCCSHHHHHHHHHHHHH--HCCSE--EEEECCCCCTTSG----GG--CCC----------------TTCCE
T ss_pred eEEEEEEcCCccchhhHHHHHHHHHH--CCCeE--EEEEcccCccccc----hh--hhh----------------cccce
Confidence 7789999975532 13467778875 34665 5799974321000 00 000 00111
Q ss_pred CEEEEeeeecccEEEEEEEecCCcCccCceeeceeecccCcccCCCceeEEEEEEcCeEEEEEeccccCCcc
Q 003217 632 TFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (838)
Q Consensus 632 ~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~ 703 (838)
.|.........| .++|++..+.... ..+.... ..-.+.+.+.+.+..++++|.|+.....
T Consensus 60 ~~~~~~~~~~~g--~~i~~k~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 119 (236)
T d1vyba_ 60 IYQANGKQKKAG--VAILVSDKTDFKP-----TKIKRDK-----EGHYIMVKGSIQQEELTILNIYAPNTGA 119 (236)
T ss_dssp EEEECCSSSSCC--EEEEECTTCCCEE-----EEEEECT-----TSSEEEEEEEETTEEEEEEEEECCSSSH
T ss_pred EEEeeccccccc--eeeEeeccccccc-----ccccccc-----cccceeeeeeeccCcceeEEeccccccc
Confidence 122222223334 3567776543211 1111211 1224567788889999999999976543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.00 E-value=0.0088 Score=62.90 Aligned_cols=105 Identities=8% Similarity=0.102 Sum_probs=58.6
Q ss_pred eEEEEEcCCCc-EEE-EECCCeEEEEcCC-CC--eeeEeec-----------------CCccEE--EEEEcCCEEEEEee
Q 003217 422 TEALTTSIDGM-IWT-GGANGLLLQWDPN-GN--RLQDFQY-----------------LPFAVQ--CLCTFGSQIWVGYM 477 (838)
Q Consensus 422 v~ala~S~dg~-l~S-gs~DgtIrlWD~~-g~--~l~tl~~-----------------H~~~V~--sls~dG~~LasGs~ 477 (838)
...++|+|||+ +++ .-.+++|.+|+.+ ++ .+..... +..... .+++||++|+++..
T Consensus 195 Pr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr 274 (365)
T d1jofa_ 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred eEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcc
Confidence 45678899988 434 4457889999883 22 2222110 111222 34678999988753
Q ss_pred ------CCeEEEEeCC--Ccccccc-----cccccCEEEE--Ee-CCCEEEEE-cCCCCeeeeecC
Q 003217 478 ------NGIVQVLDLE--GNLLGGW-----VAHSSPVIKM--AV-GAGYIFTL-ANHGGIRGWNVT 526 (838)
Q Consensus 478 ------DgtIrlWD~~--g~~i~~l-----~gH~~~V~sl--a~-dg~~l~S~-S~DgtIrlWdl~ 526 (838)
...|..|++. +.+.... .........| .+ +|++|+.+ ..+++|.+|++.
T Consensus 275 ~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~ 340 (365)
T d1jofa_ 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred cCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence 2247777754 3321111 1111223334 44 68877654 678999999864
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.00 E-value=0.076 Score=53.51 Aligned_cols=111 Identities=11% Similarity=0.006 Sum_probs=74.3
Q ss_pred ceeEEEEecCC-EEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE
Q 003217 133 CFLRTIVCTEE-QLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (838)
Q Consensus 133 ~~~~~l~~~~~-~l~~g--~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG 209 (838)
.++..++.+.+ .||++ .++.|+.||...... .+.. . .+.+.+++++++|++++++
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~-------------------~~~~--~-~~~~~gla~~~dG~l~v~~ 85 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-------------------IHAT--V-EGKVSGLAFTSNGDLVATG 85 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-------------------EEEE--C-SSEEEEEEECTTSCEEEEE
T ss_pred CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE-------------------EEEc--C-CCCcceEEEcCCCCeEEEe
Confidence 46777777654 67764 366777777542111 0111 1 4578999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEe--ccccccEEEEEEecCCCEE-EeeCCCcEEEEECCCc
Q 003217 210 HRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWEAI 272 (838)
Q Consensus 210 s~DGtIrvWd~~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG~L~-SgS~DgtIrvWd~~~~ 272 (838)
..++.+.+|+..... .....+ .......+.+++.++|+++ +-+.++.|..++..+.
T Consensus 86 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~ 144 (302)
T d2p4oa1 86 WNADSIPVVSLVKSD-------GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 144 (302)
T ss_dssp ECTTSCEEEEEECTT-------SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred cCCceEEEEEecccc-------cceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCC
Confidence 999999888876542 112222 2345678999999999965 6667787777777553
|
| >d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: DNase I-like domain: Cytolethal distending toxin subunit B species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.00084 Score=66.30 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=23.4
Q ss_pred CCceeEEEEEEcCeEEEEEeccccCCcc-hHHHHHHHHHHHHHh
Q 003217 676 NKGAVGLRVRVYDRIMCFVNCHFAAHLE-AVNRRNADFDHVYRT 718 (838)
Q Consensus 676 nKG~v~i~~~i~~~~~~Fv~~HLaa~~~-~~~~Rn~d~~~I~~~ 718 (838)
+.+.+.+.+ ..+.++|.||.++.+ +-.++.+....+.+.
T Consensus 119 ~r~~~~~~~----~~~~v~n~Hl~~~~~~~~~~~~~~~~~~~~~ 158 (250)
T d2f1na1 119 GRPLLGIRI----GNDAFFTAHAIAMRNNDAPALVEEVYNFFRD 158 (250)
T ss_dssp CCCEEEEEE----TTEEEEEEECCSSSSCSHHHHHHHHHHHHHT
T ss_pred ccceeeEee----ceEEEEEEEcCCCCchhHHHHHHHHHHHHHH
Confidence 445555554 468899999987743 333344445555444
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.91 E-value=0.067 Score=52.13 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=41.1
Q ss_pred EEEcCCCcEEEEECCC--eEEEEcCCCCeeeEeec-CCccEEEEEEcCCEEEEEeeCCeEEEEeCCCc
Q 003217 425 LTTSIDGMIWTGGANG--LLLQWDPNGNRLQDFQY-LPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGN 489 (838)
Q Consensus 425 la~S~dg~l~Sgs~Dg--tIrlWD~~g~~l~tl~~-H~~~V~sls~dG~~LasGs~DgtIrlWD~~g~ 489 (838)
...+++..++....++ .|.++|++|+.++.++. ....+..+++||++|+- ..++.|.++|+++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~~~~SpDG~~I~f-~~~~~l~~~d~~~g 263 (281)
T d1k32a2 197 PVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILF-SKGGSIYIFNPDTE 263 (281)
T ss_dssp EEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEE-EETTEEEEECTTTC
T ss_pred eeeeccccceecccccccceEEEeCCCCceEEeecCCCcccccCcCCCCEEEE-EeCCEEEEEECCCC
Confidence 3444554444443333 46677887665555554 33467788999998776 45788999998743
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.82 E-value=0.26 Score=48.11 Aligned_cols=69 Identities=10% Similarity=0.056 Sum_probs=43.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCCCEEEe-eCCCcEEEEECC
Q 003217 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSG-SEGGGIKIWPWE 270 (838)
Q Consensus 193 ~V~~la~s~dg~~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~Sg-S~DgtIrvWd~~ 270 (838)
....++++++|.+.++....+.+++++-.++ .......+ .....+|+++++|+|+.+ .....+.+.+..
T Consensus 58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~--------~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~ 127 (260)
T d1rwia_ 58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN--------QTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAG 127 (260)
T ss_dssp SCCCEEECTTCCEEEEETTTEEEEECTTCSC--------CEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred CceEEEEcCCCCEEEeeeeeceeeeeeeccc--------eeeeeeee-eeecccccccccceeEeeccccccccccccc
Confidence 3456899999998888777777776654443 22222222 345689999999997644 344445555543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=96.80 E-value=0.026 Score=59.14 Aligned_cols=78 Identities=4% Similarity=-0.101 Sum_probs=46.7
Q ss_pred cEEEEEEecCCC-EEEee-CCCcEEEEECCCcceeeecCCCceeeeEEEEeeceeecccceeccceeeeecCCeEEEEEc
Q 003217 243 PVLSLCISSYGD-LWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD 320 (838)
Q Consensus 243 ~V~slafs~dG~-L~SgS-~DgtIrvWd~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~ 320 (838)
.+.+++|+|||+ |++++ ....|.+|+.......... ... ... .+....+.++++
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~-------~~~------~~~-----------~~g~gPr~i~f~ 201 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV-------GSV------DAP-----------DPGDHPRWVAMH 201 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE-------EEE------ECS-----------STTCCEEEEEEC
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeec-------cce------eec-----------CCCCceEEEEEC
Confidence 478999999998 65554 3457888776432111000 000 000 012345778888
Q ss_pred CCCCEEEEeC--CCcEEEEeccCccE
Q 003217 321 HSRAKVWSAG--FLSFALWDARTREL 344 (838)
Q Consensus 321 ~~~~~V~s~s--~~tI~lWD~~tg~~ 344 (838)
+++..++... +.+|.+||..++..
T Consensus 202 pdg~~~yv~~e~~~~V~v~~~~~~~~ 227 (365)
T d1jofa_ 202 PTGNYLYALMEAGNRICEYVIDPATH 227 (365)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred CCCceEEEeccCCCEEEEEEecCCCc
Confidence 8888887765 36788998876553
|
| >d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: DNase I-like domain: Deoxyribonuclease I species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.30 E-value=0.0017 Score=62.35 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=24.0
Q ss_pred CceeEEEEEEcC---eEEEEEeccccCCcchHHHHHHHHHHHHHhc
Q 003217 677 KGAVGLRVRVYD---RIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (838)
Q Consensus 677 KG~v~i~~~i~~---~~~~Fv~~HLaa~~~~~~~Rn~d~~~I~~~l 719 (838)
+......+.... ..+.+++.|+... ....|.+....+++.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 154 (260)
T d2a40b1 111 REPAVVKFSSHSTKVKEFAIVALHSAPS--DAVAEINSLYDVYLDV 154 (260)
T ss_dssp SCCEEEEEECTTSSSSEEEEEECCCCGG--GHHHHHHHHHHHHHHH
T ss_pred ccceeeeeecccccceEEEEEeeccccc--hhhHHHHHHHHHHHHH
Confidence 344444444433 5788889998764 3444555666666654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.82 E-value=1.1 Score=44.64 Aligned_cols=88 Identities=14% Similarity=0.079 Sum_probs=59.1
Q ss_pred ceEEEEEcCCCc-E-EEEECCCeEEEEcCCC---Ce---eeE---eecCCccEEEEEEcCC-EEEEEe-eCCeEEEEeCC
Q 003217 421 RTEALTTSIDGM-I-WTGGANGLLLQWDPNG---NR---LQD---FQYLPFAVQCLCTFGS-QIWVGY-MNGIVQVLDLE 487 (838)
Q Consensus 421 ~v~ala~S~dg~-l-~Sgs~DgtIrlWD~~g---~~---l~t---l~~H~~~V~sls~dG~-~LasGs-~DgtIrlWD~~ 487 (838)
....+++++++. + ++-+..+.|..++.+. .. ... +.+.......++.|.. .||++. ..+.|..||.+
T Consensus 149 ~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~ 228 (295)
T d2ghsa1 149 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 228 (295)
T ss_dssp SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred CcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC
Confidence 345688999986 4 5555677888887632 11 111 2223334556777633 577665 47789999999
Q ss_pred CcccccccccccCEEEEEeCC
Q 003217 488 GNLLGGWVAHSSPVIKMAVGA 508 (838)
Q Consensus 488 g~~i~~l~gH~~~V~sla~dg 508 (838)
|+++..+......++++++.|
T Consensus 229 G~~~~~i~lP~~~~T~~~FGG 249 (295)
T d2ghsa1 229 GNHIARYEVPGKQTTCPAFIG 249 (295)
T ss_dssp CCEEEEEECSCSBEEEEEEES
T ss_pred CcEeeEecCCCCceEEEEEeC
Confidence 999888887777899998743
|
| >d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: DNase I-like domain: Cytolethal distending toxin subunit B species: Haemophilus ducreyi [TaxId: 730]
Probab=95.45 E-value=0.038 Score=53.41 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=23.0
Q ss_pred eEEEEEEeCCCCCCcc-----cccccccCCCCCceEEEEEeecccC
Q 003217 554 ILAGTWNVGQGRASQD-----ALISWLGSAASDVGIVVVGLQEVEM 594 (838)
Q Consensus 554 i~~~twNv~~~~~~~~-----~l~~wl~~~~~~~di~vig~QE~~~ 594 (838)
+-++|||+.+.....+ .+...+. ...++| ||+|||+..
T Consensus 5 ~rv~TwNi~~~~~~~~~~~~~~~~~~~~-~~~~~D--Ii~LQEv~~ 47 (261)
T d1sr4b_ 5 FKVATWNLQGSSAVNESKWNINVRQLLS-GEQGAD--ILMVQEAGS 47 (261)
T ss_dssp SCEEEEECCCCSSSSHHHHHHHHHHHHC-STTCCS--EEEEESCCS
T ss_pred CEEEEEeCCcCCCCccccccHHHHHHHH-hcCCCC--EEEEEccCc
Confidence 5589999986544322 1222222 245678 579999964
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.70 E-value=4.5 Score=42.65 Aligned_cols=102 Identities=8% Similarity=-0.070 Sum_probs=60.1
Q ss_pred EecCCCEEEEeCCCCccccccccccccCCCCCCCCCCceeeecCCCCeEEEEEcCCCCEEEEE---------eCCCcEEE
Q 003217 147 AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG---------HRDGRIMC 217 (838)
Q Consensus 147 ~g~d~~vrvWd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~V~~la~s~dg~~LaSG---------s~DGtIrv 217 (838)
...++.|.+||+.+...... ..... +. .-.+....+|||++.|+.+ +..+.+-+
T Consensus 33 ~~~~g~i~~~~~~~~~~~~l------------~~~~~----~~-~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i 95 (465)
T d1xfda1 33 REQKGTVRLWNVETNTSTVL------------IEGKK----IE-SLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (465)
T ss_dssp CCSSSCEEEBCGGGCCCEEE------------ECTTT----TT-TTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred EeCCCcEEEEECCCCCEEEE------------EcCcc----cc-ccccceeEECCCCCeEEEEEcccceeEeeccccEEE
Confidence 34577899999876433111 00000 11 2245567899999988776 34567888
Q ss_pred EECCCCccCCCCCcceeEEeccccccEEEEEEecCCC-EEEeeCCCcEEEEECCCc
Q 003217 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAI 272 (838)
Q Consensus 218 Wd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~~~ 272 (838)
+|+.++. ...+....+..+.+....|||||+ |+-.. ++-|.+.+..++
T Consensus 96 ~d~~~~~------~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~ 144 (465)
T d1xfda1 96 SKIPHGD------PQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGK 144 (465)
T ss_dssp EESSSCC------CEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSS
T ss_pred EEccCCc------eeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCC
Confidence 9998862 111211223344566678999998 65443 556777776553
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.50 E-value=5.7 Score=37.26 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=16.1
Q ss_pred EeccccccEEEEEEecCCC-EE
Q 003217 236 SWQAHRGPVLSLCISSYGD-LW 256 (838)
Q Consensus 236 ~l~gH~~~V~slafs~dG~-L~ 256 (838)
.+..+...+.+-+|||||+ |+
T Consensus 33 ~l~~~~~~~~sP~wSPDGk~IA 54 (269)
T d2hqsa1 33 VVHRSPQPLMSPAWSPDGSKLA 54 (269)
T ss_dssp EEEEESSCEEEEEECTTSSEEE
T ss_pred EEecCCCceeeeEECCCCCEEE
Confidence 3344567888999999998 65
|
| >d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: DNase I-like domain: DNA repair endonuclease Hap1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.87 E-value=0.24 Score=48.11 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=23.8
Q ss_pred eeEEEEEEeCCCCC-CcccccccccCCCCCceEEEEEeeccc
Q 003217 553 KILAGTWNVGQGRA-SQDALISWLGSAASDVGIVVVGLQEVE 593 (838)
Q Consensus 553 ~i~~~twNv~~~~~-~~~~l~~wl~~~~~~~di~vig~QE~~ 593 (838)
.|-+.||||++-+. ....+.+||.. .+||| |||||+-
T Consensus 18 ~mki~S~NvnGlr~~~~~~~~~~i~~--~~pDI--i~LQE~k 55 (275)
T d1hd7a_ 18 TLKICSWNVDGLRAWIKKKGLDWVKE--EAPDI--LCLQETK 55 (275)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH--HCCSE--EEEECCC
T ss_pred cEEEEEEEeccHHhhhhccHHHHHHh--CCCCE--EEEEccc
Confidence 47899999986321 12334567774 45676 5799973
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.99 E-value=17 Score=34.68 Aligned_cols=73 Identities=12% Similarity=0.214 Sum_probs=49.4
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccccccEEEEEEecCC-CE-EEeeCCCcEEEEE
Q 003217 192 SSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DL-WSGSEGGGIKIWP 268 (838)
Q Consensus 192 ~~V~~la~s~dg~-~LaSGs~DGtIrvWd~~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L-~SgS~DgtIrvWd 268 (838)
..+.+|+||...+ +.|+=..++.|+.-+++++. .......-...+.+|+++.-+ +| |+-...+.|.+.+
T Consensus 36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~--------~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~ 107 (263)
T d1npea_ 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--------PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK 107 (263)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--------CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC--------cEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEe
Confidence 3577899997665 45555677889988988752 222222223568999998755 46 5767778899988
Q ss_pred CCCc
Q 003217 269 WEAI 272 (838)
Q Consensus 269 ~~~~ 272 (838)
++..
T Consensus 108 ~dg~ 111 (263)
T d1npea_ 108 MDGT 111 (263)
T ss_dssp TTSC
T ss_pred cCCc
Confidence 8653
|
| >d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: DNase I-like domain: DNA-repair enzyme exonuclease III species: Escherichia coli [TaxId: 562]
Probab=84.46 E-value=0.12 Score=49.05 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=25.8
Q ss_pred EEEEEEeCCCCCCcccccccccCCCCCceEEEEEeeccc
Q 003217 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVE 593 (838)
Q Consensus 555 ~~~twNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~ 593 (838)
-+.||||++-+...+.+.+||.. .+|| ||||||+-
T Consensus 2 ki~S~NvnG~r~r~~~i~~~i~~--~~~D--Ii~LQEv~ 36 (268)
T d1akoa_ 2 KFVSFNINGLRARPHQLEAIVEK--HQPD--VIGLQETK 36 (268)
T ss_dssp EEEEEECSCGGGCHHHHHHHHHH--HCCS--EEEEECCC
T ss_pred EEEEEEeCCHHHhHHHHHHHHHH--CCCC--EEEEEeee
Confidence 47899998755555678888874 3566 56899984
|