Citrus Sinensis ID: 003281
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 834 | 2.2.26 [Sep-21-2011] | |||||||
| Q6NY74 | 601 | Replication protein A 70 | yes | no | 0.687 | 0.953 | 0.328 | 1e-95 | |
| Q5ZJJ2 | 614 | Replication protein A 70 | yes | no | 0.690 | 0.938 | 0.343 | 3e-95 | |
| Q8VEE4 | 623 | Replication protein A 70 | yes | no | 0.703 | 0.942 | 0.335 | 1e-92 | |
| P27694 | 616 | Replication protein A 70 | yes | no | 0.505 | 0.685 | 0.406 | 3e-91 | |
| Q5R7Q4 | 616 | Replication protein A 70 | yes | no | 0.505 | 0.685 | 0.404 | 3e-90 | |
| Q01588 | 609 | Replication protein A 70 | N/A | no | 0.505 | 0.692 | 0.383 | 1e-86 | |
| Q5FW17 | 609 | Replication protein A 70 | yes | no | 0.505 | 0.692 | 0.382 | 3e-86 | |
| P22336 | 621 | Replication factor A prot | yes | no | 0.667 | 0.896 | 0.288 | 6e-81 | |
| Q92372 | 609 | Replication factor A prot | yes | no | 0.508 | 0.696 | 0.321 | 1e-73 | |
| Q24492 | 603 | Replication protein A 70 | yes | no | 0.537 | 0.742 | 0.329 | 4e-71 |
| >sp|Q6NY74|RFA1_DANRE Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio GN=rpa1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 351 bits (901), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 218/664 (32%), Positives = 357/664 (53%), Gaps = 91/664 (13%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQ ++++ + + RFR+++SDG + ML+TQ N + L V
Sbjct: 22 PILQCVNIRKI------DGGNGVSRFRVMMSDGLHTMSSFMLSTQLNPMAEQNQLATNCV 75
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
L + NV+++ R +V+++D++V+ S+++ PG + G+P
Sbjct: 76 CVLKRSVTNVLKDGRRVVVILDIEVL---------------KSADQMPGKI-GDPTPYVE 119
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
G S + P T P AR + +P+ G+ ++
Sbjct: 120 GQS----------KAPS-TAPAPTARPL---------QPQNGSDGSTY------------ 147
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
RP A ++ + P M +P+ S+++PIA+LNPY KWTI+ARVT
Sbjct: 148 ---RPSAQSFGKKP----MAAPNTPGG---------SSKVVPIASLNPYQSKWTIRARVT 191
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
K +R ++N RGDGK+F +L+D + GEIR T FN D+F+ +E GK++ +S+G+LK
Sbjct: 192 NKSAIRTWSNSRGDGKLFSMELVD-ESGEIRATGFNNEVDKFFSLIEQGKVFYISKGTLK 250
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A K F+ L ND E+ L+ + + C ED +P Q F I D+E E ++++D+IGV
Sbjct: 251 IANKQFSSLKNDYEMTLNGETSIIPC-EDSNDVPMLQCDFVSIADLESREKDTILDVIGV 309
Query: 360 VSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPI 419
A +M KN E KR + L DMSGR ++LT+WG+ D PI
Sbjct: 310 CKNAEDVARIMTKNSREVSKRNIQLIDMSGRVIQLTMWGSDA--------ETFDGSGQPI 361
Query: 420 LAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGK--NTQSVSISRDSLS 477
LA+K R+SDF G+ + T+ ++ + I PD PEA++L+ W++KEG + QS++ R
Sbjct: 362 LAIKGARLSDFGGRSLSTLYSSTVMINPDIPEAYKLRGWYDKEGHALDGQSMTELRGPGG 421
Query: 478 VGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVM 537
G + KT++++K+E LG +K D+ + ATIVYI+ +N Y ACP + CNKKV+
Sbjct: 422 GGNTNW-KTLAEVKNEHLGHGDKADYFSCIATIVYIRKENCLYQACP----SKDCNKKVV 476
Query: 538 NNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLK 597
+ +G + C++CD+ + YR +L I D WVT FQ+ AE ++G ++ L LK
Sbjct: 477 DQQNGMFRCEKCDKEFPDFKYRLMLSANIADFGDNQWVTCFQDTAETLLGQNSSYLGQLK 536
Query: 598 YVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDL 657
D N+ F EV ++A F ++F+ +VK ET++DE R+K TVV A+ ++ ++ ++
Sbjct: 537 --DTNEAAFDEVFQHANFNTFVFRNRVKLETYNDESRIKVTVVDAKPVDHREYSKRLIIN 594
Query: 658 MDKL 661
+ KL
Sbjct: 595 IRKL 598
|
Plays an essential role in several cellular processes in DNA metabolism including replication, recombination and DNA repair. Binds and subsequently stabilizes single-stranded DNA intermediates and thus prevents complementary DNA from reannealing. Danio rerio (taxid: 7955) |
| >sp|Q5ZJJ2|RFA1_CHICK Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus GN=RPA1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8VEE4|RFA1_MOUSE Replication protein A 70 kDa DNA-binding subunit OS=Mus musculus GN=Rpa1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P27694|RFA1_HUMAN Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q5R7Q4|RFA1_PONAB Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii GN=RPA1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q01588|RFA1_XENLA Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis GN=rpa1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5FW17|RFA1_XENTR Replication protein A 70 kDa DNA-binding subunit OS=Xenopus tropicalis GN=rpa1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P22336|RFA1_YEAST Replication factor A protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFA1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q92372|RFA1_SCHPO Replication factor A protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssb1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q24492|RFA1_DROME Replication protein A 70 kDa DNA-binding subunit OS=Drosophila melanogaster GN=RpA-70 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 834 | ||||||
| 225427514 | 882 | PREDICTED: replication protein A 70 kDa | 0.982 | 0.928 | 0.647 | 0.0 | |
| 147856620 | 882 | hypothetical protein VITISV_038295 [Viti | 0.982 | 0.928 | 0.646 | 0.0 | |
| 255557709 | 901 | replication factor A 1, rfa1, putative [ | 0.962 | 0.891 | 0.601 | 0.0 | |
| 449456771 | 861 | PREDICTED: replication protein A 70 kDa | 0.956 | 0.926 | 0.594 | 0.0 | |
| 224074474 | 701 | predicted protein [Populus trichocarpa] | 0.805 | 0.958 | 0.661 | 0.0 | |
| 356529769 | 894 | PREDICTED: replication protein A 70 kDa | 0.977 | 0.911 | 0.545 | 0.0 | |
| 357484641 | 1723 | Replication protein A 70 kDa DNA-binding | 0.946 | 0.457 | 0.558 | 0.0 | |
| 297800136 | 801 | hypothetical protein ARALYDRAFT_329623 [ | 0.894 | 0.931 | 0.546 | 0.0 | |
| 15242405 | 853 | replication factor-A protein 1-like prot | 0.906 | 0.886 | 0.528 | 0.0 | |
| 297846122 | 822 | hypothetical protein ARALYDRAFT_313748 [ | 0.898 | 0.911 | 0.518 | 0.0 |
| >gi|225427514|ref|XP_002264009.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1103 bits (2852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/872 (64%), Positives = 663/872 (76%), Gaps = 53/872 (6%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV D++LV QQQ + +RFR++LSDG QQGMLATQRNELV SG LQ GSVV
Sbjct: 25 PVLQVADIRLV---NTQQQSNSNERFRILLSDGCHLQQGMLATQRNELVKSGRLQKGSVV 81
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKP------------VPAQR-----PSSN 104
+LT+F CNVI++RMI+I++DLDVI++KCDPIG+P P R PSS
Sbjct: 82 QLTQFVCNVIKDRMIIIIIDLDVILEKCDPIGEPKQYVQGGTAGGVAPIARTSAPMPSSV 141
Query: 105 EQPGSVTGNPQS--------------NATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSN 150
+ PG+V GNPQS N GV+ +H N+ S + R G+N
Sbjct: 142 DHPGTVLGNPQSFGNSSLTGGSAAKPNMAGVASPYHANSFSSN-------PDSGRFAGTN 194
Query: 151 LPPNYFK-------PEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSM 203
PP Y K P A +GS+ +QS F N + E SR + AR PQ+ Y Q P M
Sbjct: 195 APPMYSKMQPDAGIPASAASTGSYGDQSTGFRNNKVEVSRAPYNAPARQPQSAYQQPPPM 254
Query: 204 YANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD 263
Y NRG V ++E +RIIPIAALNPY G+WTIKARVTAKGELRHYNN RGDGKVF FDLLD
Sbjct: 255 YTNRGPVARNEAAARIIPIAALNPYQGRWTIKARVTAKGELRHYNNPRGDGKVFSFDLLD 314
Query: 264 SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
SDGGEIRVTCFNAVADQFY+Q+E GK+YL+S+GSLKPAQK FNHL ND EIFL+ TS +Q
Sbjct: 315 SDGGEIRVTCFNAVADQFYNQIETGKVYLISKGSLKPAQKTFNHLRNDHEIFLESTSTIQ 374
Query: 324 LCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLH 383
C++DD SIPRQQFHFR I+DVE MENNSVVD+IGVVS+ISP+AS+MRKNGTETQKR LH
Sbjct: 375 PCFDDDNSIPRQQFHFRSISDVESMENNSVVDVIGVVSFISPSASIMRKNGTETQKRALH 434
Query: 384 LRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQL 443
L+DMSGRSVELTLWGNFCN +G RLQ+MCDSGVFP+LAVK+ RV+DFNGK VGTIST+QL
Sbjct: 435 LKDMSGRSVELTLWGNFCNAEGQRLQNMCDSGVFPVLAVKSARVNDFNGKAVGTISTSQL 494
Query: 444 FIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDW 503
FIEPDFPEA +LKEWF+KEG+NT SVSISR+ S+GR D+RKT+SQIKDE LGT EKPDW
Sbjct: 495 FIEPDFPEARKLKEWFDKEGRNTPSVSISREVTSMGRTDVRKTISQIKDERLGTSEKPDW 554
Query: 504 ITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQ 563
ITV AT+ +IK DNFCYTACPIMIGDR CNKKV NNGDG+W C+RCDQSV +CDYRYILQ
Sbjct: 555 ITVCATVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCERCDQSVDDCDYRYILQ 614
Query: 564 FQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLK 623
FQIQDHTGLTWVTAFQEC EEIMG+SAK+LY LKY +Q+DEKFGE++R FTKY FKLK
Sbjct: 615 FQIQDHTGLTWVTAFQECGEEIMGISAKNLYYLKYEEQDDEKFGEILRGVLFTKYSFKLK 674
Query: 624 VKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSFALKAENIIPKPEMT 683
VKEE FSDEQRVKSTVVKAE+ N+SSE+RF+LD+++K K DST F LK+EN+I MT
Sbjct: 675 VKEEIFSDEQRVKSTVVKAEKVNFSSESRFLLDMVEKHKVEDST-FPLKSENVISNGGMT 733
Query: 684 YTGTGNIGSRQTAPVVANYVGNNSNAGAASGLLANQMGQYGNQYSGSRLPAAGTSAARQS 743
G GN+G RQ+ P V NY GN SNAG G ANQ Q+GNQY S L A G++ QS
Sbjct: 734 NPGLGNVGIRQSTPSV-NYSGNASNAGRDFGFPANQGVQHGNQYGSSGLSATGSTGMYQS 792
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSG-AGIATSSECYKCHKTGHWARDCP 802
C+SCG GHSS NCPS+M P QSSGGGY + S+G + T+ ECYKCH+ GHWARDCP
Sbjct: 793 CNSCGGTGHSSSNCPSVMHSPRQSSGGGYVSRASTGPSAGGTTGECYKCHQFGHWARDCP 852
Query: 803 SLNAAPPAYGSSGIGISAAGYRGAPRQQVGGF 834
LN PPAYGSS G+++ Y +Q+VGGF
Sbjct: 853 GLNTGPPAYGSS--GVNSGSYSSFAKQRVGGF 882
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147856620|emb|CAN82475.1| hypothetical protein VITISV_038295 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255557709|ref|XP_002519884.1| replication factor A 1, rfa1, putative [Ricinus communis] gi|223540930|gb|EEF42488.1| replication factor A 1, rfa1, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449456771|ref|XP_004146122.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224074474|ref|XP_002304377.1| predicted protein [Populus trichocarpa] gi|222841809|gb|EEE79356.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356529769|ref|XP_003533460.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357484641|ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding subunit [Medicago truncatula] gi|355513943|gb|AES95566.1| Replication protein A 70 kDa DNA-binding subunit [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297800136|ref|XP_002867952.1| hypothetical protein ARALYDRAFT_329623 [Arabidopsis lyrata subsp. lyrata] gi|297313788|gb|EFH44211.1| hypothetical protein ARALYDRAFT_329623 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|15242405|ref|NP_199353.1| replication factor-A protein 1-like protein [Arabidopsis thaliana] gi|9758730|dbj|BAB09168.1| replication protein A1-like [Arabidopsis thaliana] gi|332007861|gb|AED95244.1| replication factor-A protein 1-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297846122|ref|XP_002890942.1| hypothetical protein ARALYDRAFT_313748 [Arabidopsis lyrata subsp. lyrata] gi|297336784|gb|EFH67201.1| hypothetical protein ARALYDRAFT_313748 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 834 | ||||||
| TAIR|locus:2163553 | 853 | RPA70C [Arabidopsis thaliana ( | 0.687 | 0.671 | 0.607 | 2.3e-223 | |
| TAIR|locus:2134766 | 784 | AT4G19130 [Arabidopsis thalian | 0.894 | 0.951 | 0.525 | 4.5e-211 | |
| TAIR|locus:2054577 | 640 | RPA1A "replication protein A 1 | 0.555 | 0.723 | 0.632 | 4.9e-181 | |
| UNIPROTKB|Q65XV7 | 951 | P0016H04.11 "Os05g0111000 prot | 0.715 | 0.627 | 0.487 | 4.1e-173 | |
| UNIPROTKB|Q9AVL8 | 654 | OsRPA70a "Replication protein | 0.646 | 0.824 | 0.528 | 1.1e-168 | |
| UNIPROTKB|P27694 | 616 | RPA1 "Replication protein A 70 | 0.496 | 0.672 | 0.411 | 8.9e-95 | |
| UNIPROTKB|Q0VCV0 | 616 | RPA1 "Replication protein A1, | 0.539 | 0.730 | 0.385 | 1.9e-91 | |
| UNIPROTKB|Q5ZJJ2 | 614 | RPA1 "Replication protein A 70 | 0.529 | 0.719 | 0.396 | 1.3e-90 | |
| ZFIN|ZDB-GENE-030912-3 | 601 | rpa1 "replication protein A1" | 0.507 | 0.703 | 0.4 | 9e-90 | |
| UNIPROTKB|E2R436 | 616 | RPA1 "Uncharacterized protein" | 0.505 | 0.685 | 0.385 | 9e-90 |
| TAIR|locus:2163553 RPA70C [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1905 (675.7 bits), Expect = 2.3e-223, Sum P(3) = 2.3e-223
Identities = 359/591 (60%), Positives = 445/591 (75%)
Query: 184 PYASN-YARTPQAPYM-QSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAK 241
P A+ Y+R Q+ Y Q P MY NRG V ++E P RI PIAALNPY G+WTIK RVT+K
Sbjct: 262 PTATTAYSRPVQSAYQPQQPPMYVNRGPVARNEAPPRINPIAALNPYQGRWTIKVRVTSK 321
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
+LR +NN RG+GK+F FDLLD+DGGEIRVTCFN DQF+ ++ G +YL+SRG+LKPA
Sbjct: 322 ADLRRFNNPRGEGKLFSFDLLDADGGEIRVTCFNDAVDQFFDKIVVGNVYLISRGNLKPA 381
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
QKNFNHL ND EI LD S +Q C EDD +IPR FHFR I D+E MENNS D+IG+VS
Sbjct: 382 QKNFNHLPNDYEIHLDSASTIQPC-EDDGTIPRYHFHFRNIGDIENMENNSTTDVIGIVS 440
Query: 362 YISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILA 421
ISPT ++MRKN TE QKR+L L+DMSGRSVE+T+WGNFCN +G +LQ++CDSGVFP+LA
Sbjct: 441 SISPTVAIMRKNLTEVQKRSLQLKDMSGRSVEVTMWGNFCNAEGQKLQNLCDSGVFPVLA 500
Query: 422 VKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRA 481
+KAGR+ +FNGK V TI +Q FIEPDFPEA L++W+E+EG+N SISR+ VGR
Sbjct: 501 LKAGRIGEFNGKQVSTIGASQFFIEPDFPEARELRQWYEREGRNAHFTSISREFSGVGRQ 560
Query: 482 DIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGD 541
++RK ++QIKDE LGT EKPDWITV ATI ++K +NFCYTACPIM GDRPC+KKV NNGD
Sbjct: 561 EVRKVIAQIKDEKLGTSEKPDWITVCATISFMKVENFCYTACPIMNGDRPCSKKVTNNGD 620
Query: 542 GRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQ 601
G W C++CD+ V ECDYRYILQ Q+QDHT LTW TAFQE EEIMGMSAKDLY +KY +Q
Sbjct: 621 GTWRCEKCDKCVDECDYRYILQIQLQDHTDLTWATAFQEAGEEIMGMSAKDLYYVKYENQ 680
Query: 602 NDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
++EKF +++R+ FTKY+FKLK+KEET+SDEQRVK+TVVKAE+ NYSS TRF+L+ +DKL
Sbjct: 681 DEEKFEDIIRSVAFTKYIFKLKIKEETYSDEQRVKATVVKAEKLNYSSNTRFMLEAIDKL 740
Query: 662 KSGDSTSFALKAENIIPKPEMTYTGTGNIGSRQTAPVVANYVGNNSNAGAASGL-LANQM 720
K GD+ S +KAE+ + + +G G G+R TA V +A GL ANQ+
Sbjct: 741 KIGDANSLPIKAESSNYRSDAFNSGVGTSGTRDTASV---------DARREFGLPAANQV 791
Query: 721 GQYGNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGP-GQSSGG 770
GQYGNQYS G + SC+ C + H S NCP++MS P GQ GG
Sbjct: 792 GQYGNQYSSDARSLGGFT----SCNVCRSNSHVSANCPTLMSEPQGQYMGG 838
|
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| TAIR|locus:2134766 AT4G19130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2054577 RPA1A "replication protein A 1A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q65XV7 P0016H04.11 "Os05g0111000 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9AVL8 OsRPA70a "Replication protein A 70kDa" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P27694 RPA1 "Replication protein A 70 kDa DNA-binding subunit" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q0VCV0 RPA1 "Replication protein A1, 70kDa" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5ZJJ2 RPA1 "Replication protein A 70 kDa DNA-binding subunit" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030912-3 rpa1 "replication protein A1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2R436 RPA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00003197001 | SubName- Full=Chromosome chr2 scaffold_140, whole genome shotgun sequence; (746 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 834 | |||
| TIGR00617 | 608 | TIGR00617, rpa1, replication factor-a protein 1 (r | 0.0 | |
| pfam08646 | 146 | pfam08646, Rep_fac-A_C, Replication factor-A C ter | 6e-71 | |
| cd04476 | 166 | cd04476, RPA1_DBD_C, RPA1_DBD_C: A subfamily of OB | 4e-65 | |
| cd04474 | 104 | cd04474, RPA1_DBD_A, RPA1_DBD_A: A subfamily of OB | 4e-47 | |
| cd04475 | 101 | cd04475, RPA1_DBD_B, RPA1_DBD_B: A subfamily of OB | 4e-35 | |
| cd04477 | 97 | cd04477, RPA1N, RPA1N: A subfamily of OB folds cor | 8e-28 | |
| pfam04057 | 99 | pfam04057, Rep-A_N, Replication factor-A protein 1 | 7e-23 | |
| PRK12366 | 637 | PRK12366, PRK12366, replication factor A; Reviewed | 4e-16 | |
| cd04481 | 106 | cd04481, RPA1_DBD_B_like, RPA1_DBD_B_like: A subgr | 7e-12 | |
| COG1599 | 407 | COG1599, RFA1, Single-stranded DNA-binding replica | 8e-12 | |
| PTZ00368 | 148 | PTZ00368, PTZ00368, universal minicircle sequence | 5e-10 | |
| PTZ00368 | 148 | PTZ00368, PTZ00368, universal minicircle sequence | 6e-08 | |
| PTZ00368 | 148 | PTZ00368, PTZ00368, universal minicircle sequence | 4e-07 | |
| pfam01336 | 75 | pfam01336, tRNA_anti, OB-fold nucleic acid binding | 7e-07 | |
| PTZ00368 | 148 | PTZ00368, PTZ00368, universal minicircle sequence | 5e-06 | |
| smart00343 | 17 | smart00343, ZnF_C2HC, zinc finger | 8e-06 | |
| pfam00098 | 18 | pfam00098, zf-CCHC, Zinc knuckle | 1e-05 | |
| cd03524 | 75 | cd03524, RPA2_OBF_family, RPA2_OBF_family: A famil | 6e-05 | |
| PRK14699 | 484 | PRK14699, PRK14699, replication factor A; Provisio | 1e-04 | |
| PRK12366 | 637 | PRK12366, PRK12366, replication factor A; Reviewed | 4e-04 | |
| PRK14699 | 484 | PRK14699, PRK14699, replication factor A; Provisio | 5e-04 | |
| COG5082 | 190 | COG5082, AIR1, Arginine methyltransferase-interact | 8e-04 | |
| PRK07211 | 485 | PRK07211, PRK07211, replication factor A; Reviewed | 0.002 | |
| PRK08402 | 355 | PRK08402, PRK08402, replication factor A; Reviewed | 0.004 |
| >gnl|CDD|233055 TIGR00617, rpa1, replication factor-a protein 1 (rpa1) | Back alignment and domain information |
|---|
Score = 628 bits (1621), Expect = 0.0
Identities = 254/664 (38%), Positives = 371/664 (55%), Gaps = 85/664 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV+DLK +R+R+V+SDG + MLATQ N LV G LQ G+++
Sbjct: 25 PVLQVLDLK------PINGAQDPRRYRIVISDGIYYSKAMLATQLNPLVREGELQEGTII 78
Query: 62 RLTKFTCNVI--QNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
RLTKF N I R ++IV +L+V+ + GNP +
Sbjct: 79 RLTKFEVNTIGKDGRKVLIVYELEVV----------------KPELKVRDKIGNPVTYEK 122
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
+ H + + PPN P+ + N +A+ P
Sbjct: 123 YLDSWHEEQV-----------LASKPATNPANPPNAKAPK---NEVASYNNAAN-----P 163
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
E P AP S R++PIA+L+PY KWTIKARVT
Sbjct: 164 ERGNA--------PPAPNSGSTR---------------RVMPIASLSPYQNKWTIKARVT 200
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
K E+R ++N RG+GK+F+ +LLD + GEIR T FN AD+FY ++ GK+Y +S+GSLK
Sbjct: 201 NKSEIRTWSNARGEGKLFNVELLD-ESGEIRATAFNEQADKFYDIIQEGKVYYISKGSLK 259
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
PA K F +L ND E+ LD ++++ C ++ A IP+ QF+F I+D+ G E NS+VD+IG+
Sbjct: 260 PANKQFTNLGNDYEMTLDRDTVIEECEDETA-IPKIQFNFVKIDDIGGYEGNSLVDVIGI 318
Query: 360 VSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
V +SPT ++ RKN E KR + L D SG+SV +TLWG+ D V P
Sbjct: 319 VQSVSPTQTITSRKNNKEFPKRDITLVDDSGKSVRVTLWGDDATK--------FDVSVQP 370
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISR--DSL 476
++A+K RVSDF GK + T ++ + + PD PEA +LK W++ EGK T + SIS
Sbjct: 371 VIAIKGVRVSDFGGKSLSTGGSSTIIVNPDIPEAEKLKGWYDNEGKGTMASSISDMMSGR 430
Query: 477 SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKV 536
G RKT+++I+ E LG +KPD+ +V ATI Y+K DN Y ACP CNKKV
Sbjct: 431 VGGSNAERKTIAEIQAENLGKSDKPDYFSVKATISYLKPDNALYRACPSE----DCNKKV 486
Query: 537 MNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSL 596
++ GDG + C++C+++ E YRYILQ I D TG WVTAF + AE+I+G SA +L L
Sbjct: 487 VDQGDGTYRCEKCNKNFAEFKYRYILQISISDETGQLWVTAFNDQAEQILGKSAAELGEL 546
Query: 597 KYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILD 656
K +++ ++F + + A F Y+F+L+VK++T++DE R K TV+ + NY +E +++L
Sbjct: 547 K--EEDPDEFEAIFQEAQFVPYIFRLRVKQDTYNDESRQKYTVMSVDPVNYRAEAKYLLQ 604
Query: 657 LMDK 660
++K
Sbjct: 605 EIEK 608
|
All proteins in this family for which functions are known are part of a multiprotein complex made up of homologs of RPA1, RPA2 and RPA3 that bind ssDNA and function in the recognition of DNA damage for nucleotide excision repairThis family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 608 |
| >gnl|CDD|149635 pfam08646, Rep_fac-A_C, Replication factor-A C terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|239922 cd04476, RPA1_DBD_C, RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
| >gnl|CDD|239920 cd04474, RPA1_DBD_A, RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
| >gnl|CDD|239921 cd04475, RPA1_DBD_B, RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
| >gnl|CDD|239923 cd04477, RPA1N, RPA1N: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
| >gnl|CDD|202872 pfam04057, Rep-A_N, Replication factor-A protein 1, N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|237078 PRK12366, PRK12366, replication factor A; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|239927 cd04481, RPA1_DBD_B_like, RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
| >gnl|CDD|224515 COG1599, RFA1, Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|173561 PTZ00368, PTZ00368, universal minicircle sequence binding protein (UMSBP); Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173561 PTZ00368, PTZ00368, universal minicircle sequence binding protein (UMSBP); Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173561 PTZ00368, PTZ00368, universal minicircle sequence binding protein (UMSBP); Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216440 pfam01336, tRNA_anti, OB-fold nucleic acid binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|173561 PTZ00368, PTZ00368, universal minicircle sequence binding protein (UMSBP); Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|197667 smart00343, ZnF_C2HC, zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|189387 pfam00098, zf-CCHC, Zinc knuckle | Back alignment and domain information |
|---|
| >gnl|CDD|239601 cd03524, RPA2_OBF_family, RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
| >gnl|CDD|173162 PRK14699, PRK14699, replication factor A; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237078 PRK12366, PRK12366, replication factor A; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|173162 PRK14699, PRK14699, replication factor A; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227414 COG5082, AIR1, Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|180887 PRK07211, PRK07211, replication factor A; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|169427 PRK08402, PRK08402, replication factor A; Reviewed | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 834 | |||
| TIGR00617 | 608 | rpa1 replication factor-a protein 1 (rpa1). This f | 100.0 | |
| PRK12366 | 637 | replication factor A; Reviewed | 100.0 | |
| PRK08402 | 355 | replication factor A; Reviewed | 100.0 | |
| cd04476 | 166 | RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds cor | 100.0 | |
| PF08646 | 146 | Rep_fac-A_C: Replication factor-A C terminal domai | 100.0 | |
| PRK07218 | 423 | replication factor A; Provisional | 100.0 | |
| PRK07211 | 485 | replication factor A; Reviewed | 99.97 | |
| PRK12366 | 637 | replication factor A; Reviewed | 99.97 | |
| PRK06386 | 358 | replication factor A; Reviewed | 99.97 | |
| PRK07211 | 485 | replication factor A; Reviewed | 99.97 | |
| PRK15491 | 374 | replication factor A; Provisional | 99.96 | |
| PRK15491 | 374 | replication factor A; Provisional | 99.96 | |
| PRK14699 | 484 | replication factor A; Provisional | 99.95 | |
| cd04474 | 104 | RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor | 99.94 | |
| PRK14699 | 484 | replication factor A; Provisional | 99.93 | |
| cd04477 | 97 | RPA1N RPA1N: A subfamily of OB folds corresponding | 99.91 | |
| PF04057 | 101 | Rep-A_N: Replication factor-A protein 1, N-termina | 99.9 | |
| cd04475 | 101 | RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds cor | 99.82 | |
| cd04481 | 106 | RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of unc | 99.75 | |
| cd04480 | 86 | RPA1_DBD_A_like RPA1_DBD_A_like: A subgroup of unc | 99.7 | |
| PF02721 | 95 | DUF223: Domain of unknown function DUF223; InterPr | 99.52 | |
| PRK07217 | 311 | replication factor A; Reviewed | 99.52 | |
| PRK08402 | 355 | replication factor A; Reviewed | 99.51 | |
| COG1599 | 407 | RFA1 Single-stranded DNA-binding replication prote | 99.18 | |
| KOG0851 | 246 | consensus Single-stranded DNA-binding replication | 99.13 | |
| cd04497 | 138 | hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB f | 99.05 | |
| COG5082 | 190 | AIR1 Arginine methyltransferase-interacting protei | 99.04 | |
| PRK06386 | 358 | replication factor A; Reviewed | 99.02 | |
| PRK07218 | 423 | replication factor A; Provisional | 98.91 | |
| PTZ00368 | 148 | universal minicircle sequence binding protein (UMS | 98.88 | |
| PTZ00368 | 148 | universal minicircle sequence binding protein (UMS | 98.83 | |
| cd04491 | 82 | SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil | 98.74 | |
| cd04491 | 82 | SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil | 98.7 | |
| PRK06461 | 129 | single-stranded DNA-binding protein; Reviewed | 98.68 | |
| PRK06461 | 129 | single-stranded DNA-binding protein; Reviewed | 98.63 | |
| KOG4400 | 261 | consensus E3 ubiquitin ligase interacting with arg | 98.45 | |
| COG5082 | 190 | AIR1 Arginine methyltransferase-interacting protei | 98.13 | |
| PF00098 | 18 | zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc fi | 98.1 | |
| TIGR00617 | 608 | rpa1 replication factor-a protein 1 (rpa1). This f | 97.96 | |
| PRK07217 | 311 | replication factor A; Reviewed | 97.92 | |
| COG1599 | 407 | RFA1 Single-stranded DNA-binding replication prote | 97.85 | |
| PF00098 | 18 | zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc fi | 97.68 | |
| PF02765 | 146 | POT1: Telomeric single stranded DNA binding POT1/C | 97.66 | |
| cd04474 | 104 | RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor | 97.66 | |
| PF01336 | 75 | tRNA_anti-codon: OB-fold nucleic acid binding doma | 97.53 | |
| KOG4400 | 261 | consensus E3 ubiquitin ligase interacting with arg | 97.41 | |
| cd04475 | 101 | RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds cor | 97.17 | |
| PF13696 | 32 | zf-CCHC_2: Zinc knuckle | 96.58 | |
| cd03524 | 75 | RPA2_OBF_family RPA2_OBF_family: A family of oligo | 96.38 | |
| KOG3416 | 134 | consensus Predicted nucleic acid binding protein [ | 96.08 | |
| cd04497 | 138 | hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB f | 95.38 | |
| KOG3416 | 134 | consensus Predicted nucleic acid binding protein [ | 95.28 | |
| PF13696 | 32 | zf-CCHC_2: Zinc knuckle | 95.07 | |
| cd04483 | 92 | hOBFC1_like hOBFC1_like: A subfamily of OB folds s | 94.93 | |
| cd03524 | 75 | RPA2_OBF_family RPA2_OBF_family: A family of oligo | 94.83 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 94.61 | |
| PF01336 | 75 | tRNA_anti-codon: OB-fold nucleic acid binding doma | 94.59 | |
| smart00343 | 26 | ZnF_C2HC zinc finger. | 94.26 | |
| KOG0109 | 346 | consensus RNA-binding protein LARK, contains RRM a | 94.19 | |
| PF13917 | 42 | zf-CCHC_3: Zinc knuckle | 94.08 | |
| cd04481 | 106 | RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of unc | 93.88 | |
| KOG0119 | 554 | consensus Splicing factor 1/branch point binding p | 93.6 | |
| cd04488 | 75 | RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f | 93.54 | |
| cd04490 | 79 | PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds | 93.52 | |
| PF14787 | 36 | zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: | 93.36 | |
| PF15489 | 1144 | CTC1: CST, telomere maintenance, complex subunit C | 93.13 | |
| cd04478 | 95 | RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor | 92.47 | |
| cd04485 | 84 | DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp | 92.17 | |
| PF13917 | 42 | zf-CCHC_3: Zinc knuckle | 91.66 | |
| smart00343 | 26 | ZnF_C2HC zinc finger. | 91.62 | |
| PF11325 | 84 | DUF3127: Domain of unknown function (DUF3127); Int | 91.19 | |
| cd04485 | 84 | DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp | 89.89 | |
| cd04489 | 78 | ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol | 89.46 | |
| PF15072 | 86 | DUF4539: Domain of unknown function (DUF4539) | 88.48 | |
| KOG0109 | 346 | consensus RNA-binding protein LARK, contains RRM a | 88.38 | |
| PTZ00401 | 550 | aspartyl-tRNA synthetase; Provisional | 88.28 | |
| PRK05813 | 219 | single-stranded DNA-binding protein; Provisional | 87.78 | |
| cd04490 | 79 | PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds | 87.65 | |
| cd04495 | 100 | BRCA2DBD_OB3 BRCA2DBD_OB3: A subfamily of OB folds | 87.57 | |
| COG5222 | 427 | Uncharacterized conserved protein, contains RING Z | 87.12 | |
| PRK06751 | 173 | single-stranded DNA-binding protein; Provisional | 86.94 | |
| cd04492 | 83 | YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol | 86.88 | |
| PRK02801 | 101 | primosomal replication protein N; Provisional | 86.83 | |
| PRK05733 | 172 | single-stranded DNA-binding protein; Provisional | 86.81 | |
| PF02765 | 146 | POT1: Telomeric single stranded DNA binding POT1/C | 86.44 | |
| PF06075 | 579 | DUF936: Plant protein of unknown function (DUF936) | 86.21 | |
| KOG0314 | 448 | consensus Predicted E3 ubiquitin ligase [Posttrans | 85.18 | |
| cd04492 | 83 | YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol | 84.25 | |
| PF14787 | 36 | zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: | 84.17 | |
| PRK09010 | 177 | single-stranded DNA-binding protein; Provisional | 83.82 | |
| PRK13732 | 175 | single-stranded DNA-binding protein; Provisional | 83.8 | |
| PF09103 | 118 | BRCA-2_OB1: BRCA2, oligonucleotide/oligosaccharide | 83.66 | |
| cd04320 | 102 | AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r | 83.3 | |
| cd04489 | 78 | ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol | 83.3 | |
| PF15288 | 40 | zf-CCHC_6: Zinc knuckle | 83.24 | |
| COG5222 | 427 | Uncharacterized conserved protein, contains RING Z | 82.98 | |
| PRK13480 | 314 | 3'-5' exoribonuclease YhaM; Provisional | 82.5 | |
| PF09104 | 143 | BRCA-2_OB3: BRCA2, oligonucleotide/oligosaccharide | 82.42 | |
| PRK07772 | 186 | single-stranded DNA-binding protein; Provisional | 81.96 | |
| cd04493 | 100 | BRCA2DBD_OB1 BRCA2DBD_OB1: A subfamily of OB folds | 81.25 | |
| PF14392 | 49 | zf-CCHC_4: Zinc knuckle | 81.07 | |
| PF14392 | 49 | zf-CCHC_4: Zinc knuckle | 81.02 | |
| PLN02850 | 530 | aspartate-tRNA ligase | 80.93 | |
| KOG4757 | 522 | consensus Predicted telomere binding protein [Gene | 80.91 | |
| KOG0851 | 246 | consensus Single-stranded DNA-binding replication | 80.73 | |
| PF15288 | 40 | zf-CCHC_6: Zinc knuckle | 80.72 | |
| cd04322 | 108 | LysRS_N LysRS_N: N-terminal, anticodon recognition | 80.63 |
| >TIGR00617 rpa1 replication factor-a protein 1 (rpa1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-119 Score=1048.64 Aligned_cols=577 Identities=43% Similarity=0.754 Sum_probs=494.1
Q ss_pred CCeEEEEeeEeeccchhhhhccccceEEEEEcccccccccccccchhhhhhcCCcccccEEEEceeeeecc-c-CeEEEE
Q 003281 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVI-Q-NRMIVI 78 (834)
Q Consensus 1 ~PvlQv~~~k~~~~~~~~~~~~~~~Ryrl~lSDG~~~~~~mLatqln~lv~~g~l~~gsiv~l~~~~~~~v-~-~r~iii 78 (834)
.|||||+++|++.+.+ ..+|||++||||.|++++|||||||++|++|.|++|+||||++|+||+| + +|+|||
T Consensus 24 ~pv~Qv~~~k~~~~~~------~~~ryr~~lsDg~~~~~~ml~t~~n~~~~~~~l~~~~iv~l~~~~~~~~~~~~~~~li 97 (608)
T TIGR00617 24 DPVLQVLDLKPINGAQ------DPRRYRIVISDGIYYSKAMLATQLNPLVREGELQEGTIIRLTKFEVNTIGKDGRKVLI 97 (608)
T ss_pred CcEEEEEeeEEcCCCC------CCceEEEEEECchHHHHHHHHHHHHHHHHhCCccCCCEEEEeEEEEeEEccCCcEEEE
Confidence 4999999999998654 2389999999999999999999999999999999999999999999999 6 689999
Q ss_pred EEeeeEeccCC---CCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCccccccCCccccCCCCCCCCCCccccCCCCCCCCC
Q 003281 79 VMDLDVIIDKC---DPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNY 155 (834)
Q Consensus 79 i~~lev~~~~~---~~ig~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (834)
|++||||...+ ++||+|+++....... . +.. ..+..|....+ ..|. .
T Consensus 98 i~~~ev~~~~~~~~~~ig~p~~~~~~~~~~------~-~~~---~~~~~~~~~~~---------~~~~-----------~ 147 (608)
T TIGR00617 98 VYELEVVKPELKVRDKIGNPVTYEKYLDSW------H-EEQ---VLASKPATNPA---------NPPN-----------A 147 (608)
T ss_pred EEeeEEeecccccccccCCCcccccccccc------C-ccc---cccccccccCC---------CCCC-----------c
Confidence 99999999754 4899999876210000 0 000 00000000000 0000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCceeccccCCCCCceEEE
Q 003281 156 FKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIK 235 (834)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~L~p~~~~w~I~ 235 (834)
..|... ...+.. ++++++.+.++.......++++||++|+||+++|+|+
T Consensus 148 -------------------~~~~~~-----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~pI~~L~py~~~wtIk 196 (608)
T TIGR00617 148 -------------------KAPKNE-----VASYNN-------AANPERGNAPPAPNSGSTRRVMPIASLSPYQNKWTIK 196 (608)
T ss_pred -------------------cCCCcc-----cccccC-------CCCcccCCCCCCccccCCcceEEHHHCCCCCCceEEE
Confidence 000000 000111 1111122222222222345799999999999999999
Q ss_pred EEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHHHhhhhccCcCcEEEEeeeEEecCCcccccCCCeEEEE
Q 003281 236 ARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIF 315 (834)
Q Consensus 236 aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~d~f~~~l~eG~vy~is~~~V~~a~~~~~~~~~~yeI~ 315 (834)
|||++||++|+|.+++|+|++|+|+|+| +||+|+|++|++.+++|+++|+||+||+|++|+|++++++|+++.|+|||+
T Consensus 197 aRV~~Ks~ir~~~~~~gegkvfsv~L~D-egg~Irat~f~~~~dkf~~~l~eG~VY~Is~~~Vk~an~~y~~~~~~yei~ 275 (608)
T TIGR00617 197 ARVTNKSEIRTWSNARGEGKLFNVELLD-ESGEIRATAFNEQADKFYDIIQEGKVYYISKGSLKPANKQFTNLGNDYEMT 275 (608)
T ss_pred EEEEeccccceecCCCCCceeeEEEEec-CCCeEEEEECchHHHHHhhhcccCCEEEECceEEEEccccccCCCCCEEEE
Confidence 9999999999999999999999999999 799999999999999999999999999999999999999999999999999
Q ss_pred EccCccEEEecCCCCCCccccccccccccccccCCCceeeEEEEEEEecCCeeEEcc-CCceeeEEEEEEeccCCcEEEE
Q 003281 316 LDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVEL 394 (834)
Q Consensus 316 f~~~T~I~~~~d~~~~iP~~~~~f~~i~dI~~~~~~~~vDVIGvV~~V~~~~~i~~k-~g~~~~kr~i~L~D~s~~si~v 394 (834)
|+.+|+|++|.+ +..||.+.|+|++|+||.+.+.+.+|||||+|++|+++.+|++| +|++..||+|+|+|+|+.+|+|
T Consensus 276 f~~~T~I~~~~d-~~~iP~~~~~f~~i~dI~~~~~~~~VDVIGvV~~v~~~~~i~~k~~g~~~~kR~i~L~D~sg~sI~v 354 (608)
T TIGR00617 276 LDRDTVIEECED-ETAIPKIQFNFVKIDDIGGYEGNSLVDVIGIVQSVSPTQTITSRKNNKEFPKRDITLVDDSGKSVRV 354 (608)
T ss_pred ECCCeEEEECCC-cccCCcccccceEHHHhhhhcCCCCccEEEEEeEecCceEEEEcCCCCeeeeEEEEEEeCCCCEEEE
Confidence 999999999965 45699999999999999998888899999999999999999865 8999999999999999999999
Q ss_pred EEcCCccchhhhhhhhcccCCCccEEEEEEEEEeecCCeEEEeecceEEEEcCCchHHHHHHHHHHhcCCccceeeeccc
Q 003281 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRD 474 (834)
Q Consensus 395 tLWg~~a~~~~~~l~~~~~~~~~~Vv~ik~~rV~~f~G~~Ls~~~~S~i~inPd~pe~~~l~~w~~~~g~~~~~~sls~~ 474 (834)
||||++|..+ +...++||+|+++||++|+|++||+.++|+|++|||+||+++|+.||+++|....+.+++..
T Consensus 355 TLWG~~A~~~--------~~~~~~Vva~kg~~V~~f~g~sLs~~~~S~i~iNPdipEa~~L~~w~~~~g~~~~~~s~~~~ 426 (608)
T TIGR00617 355 TLWGDDATKF--------DVSVQPVIAIKGVRVSDFGGKSLSTGGSSTIIVNPDIPEAEKLKGWYDNEGKGTMASSISDM 426 (608)
T ss_pred EEEhhhhhhc--------CCCCCCEEEEEeEEEEecCCceEeccCCceEEECCCcHHHHHHHHHHHhcCCCccceeehhc
Confidence 9999999864 34578999999999999999999999999999999999999999999999988776666554
Q ss_pred cc--cCCccchhccHhhhhhcCCCCCCCCceEEEEEEEEEEecCCeeeeCCCCCcCCCCcCcccccCCCCceecCCCCCc
Q 003281 475 SL--SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQS 552 (834)
Q Consensus 475 ~~--~~~~~~~~ktI~ei~~~~lg~~~k~~~~~v~atI~~I~~d~~~Y~aC~~~~~~~~C~KKv~~~~dg~~~CekC~~~ 552 (834)
.+ ..++..+++||+||+++++|.+++++||+|+|+|++|+.|+|||+|||++ .|+|||+++.+|.|+|++|+++
T Consensus 427 ~~~~~~~~~~~~ktI~ei~~~~lg~~~k~~~f~v~atI~~Ik~d~~~Y~ACp~~----~CnKKV~~~~~g~~~CekC~~~ 502 (608)
T TIGR00617 427 MSGRVGGSNAERKTIAEIQAENLGKSDKPDYFSVKATISYLKPDNALYRACPSE----DCNKKVVDQGDGTYRCEKCNKN 502 (608)
T ss_pred cccccCCcccccccHHHHhhhccCCCCCCcEEEEEEEEEEEecCCeEeccCChh----hCCCccccCCCCCEECCCCCCC
Confidence 22 13446789999999999999999999999999999999999999999954 3999999888899999999999
Q ss_pred cccceEEEEEEEEEEeCCCeEEEEEehHHHHHHhCCCHHHHHhhhccCCChhHHHHHHHHhcCceEEEEEEEeecccCcc
Q 003281 553 VVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632 (834)
Q Consensus 553 ~~~~~~ry~l~~~i~D~Tg~~~~~~F~e~ae~llG~sA~el~~l~~ee~d~~~~~~~l~~~~~k~~~f~l~~k~~~ynde 632 (834)
+++|+|||+|++.|+|+||++|+++|++.|++|||++|+||.+++ ++|++.|+++|+++.|++|+|+|++++++||||
T Consensus 503 ~~~~~~RYil~~~i~D~Tg~~~~t~F~~~ae~llG~sA~eL~~l~--~~~~~~~~~i~~~~~~~~~~f~~~~k~e~yn~e 580 (608)
T TIGR00617 503 FAEFKYRYILQISISDETGQLWVTAFNDQAEQILGKSAAELGELK--EEDPDEFEAIFQEAQFVPYIFRLRVKQDTYNDE 580 (608)
T ss_pred CCCccEEEEEEEEEEeCCCCEEEEEEhHHHHHHcCCCHHHHHHHH--hcCHHHHHHHHHHhhCcEEEEEEEEEEcccCCE
Confidence 999999999999999999999999999999999999999999999 678899999999999999999999999999999
Q ss_pred ceEEEEEEEeeecChHHHHHHHHHHHHh
Q 003281 633 QRVKSTVVKAERYNYSSETRFILDLMDK 660 (834)
Q Consensus 633 ~rvk~~v~~~~~vd~~~e~~~Ll~~i~~ 660 (834)
.|+|++|++++||||++|+++||++|++
T Consensus 581 ~r~~~~v~~~~~vd~~~e~~~L~~~i~~ 608 (608)
T TIGR00617 581 SRQKYTVMSVDPVNYRAEAKYLLQEIEK 608 (608)
T ss_pred eeEEEEEEEeeeCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999964
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK12366 replication factor A; Reviewed | Back alignment and domain information |
|---|
| >PRK08402 replication factor A; Reviewed | Back alignment and domain information |
|---|
| >cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
| >PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing | Back alignment and domain information |
|---|
| >PRK07218 replication factor A; Provisional | Back alignment and domain information |
|---|
| >PRK07211 replication factor A; Reviewed | Back alignment and domain information |
|---|
| >PRK12366 replication factor A; Reviewed | Back alignment and domain information |
|---|
| >PRK06386 replication factor A; Reviewed | Back alignment and domain information |
|---|
| >PRK07211 replication factor A; Reviewed | Back alignment and domain information |
|---|
| >PRK15491 replication factor A; Provisional | Back alignment and domain information |
|---|
| >PRK15491 replication factor A; Provisional | Back alignment and domain information |
|---|
| >PRK14699 replication factor A; Provisional | Back alignment and domain information |
|---|
| >cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
| >PRK14699 replication factor A; Provisional | Back alignment and domain information |
|---|
| >cd04477 RPA1N RPA1N: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
| >PF04057 Rep-A_N: Replication factor-A protein 1, N-terminal domain; InterPro: IPR007199 Replication factor-a protein 1 (RPA1) forms a multiprotein complex with RPA2 and RPA3 that binds single-stranded DNA and functions in the recognition of DNA damage for nucleotide excision repair | Back alignment and domain information |
|---|
| >cd04475 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
| >cd04481 RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
| >cd04480 RPA1_DBD_A_like RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
| >PF02721 DUF223: Domain of unknown function DUF223; InterPro: IPR003871 The function of this domain has not been characterised, but may be involved in nucleic acid or nucleotide binding | Back alignment and domain information |
|---|
| >PRK07217 replication factor A; Reviewed | Back alignment and domain information |
|---|
| >PRK08402 replication factor A; Reviewed | Back alignment and domain information |
|---|
| >COG1599 RFA1 Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0851 consensus Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP) | Back alignment and domain information |
|---|
| >COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK06386 replication factor A; Reviewed | Back alignment and domain information |
|---|
| >PRK07218 replication factor A; Provisional | Back alignment and domain information |
|---|
| >PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional | Back alignment and domain information |
|---|
| >PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional | Back alignment and domain information |
|---|
| >cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB) | Back alignment and domain information |
|---|
| >cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB) | Back alignment and domain information |
|---|
| >PRK06461 single-stranded DNA-binding protein; Reviewed | Back alignment and domain information |
|---|
| >PRK06461 single-stranded DNA-binding protein; Reviewed | Back alignment and domain information |
|---|
| >KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >TIGR00617 rpa1 replication factor-a protein 1 (rpa1) | Back alignment and domain information |
|---|
| >PRK07217 replication factor A; Reviewed | Back alignment and domain information |
|---|
| >COG1599 RFA1 Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PF02765 POT1: Telomeric single stranded DNA binding POT1/CDC13; InterPro: IPR011564 This entry represents a domain that binds single stranded telomeric DNA and adopts an OB fold [] | Back alignment and domain information |
|---|
| >cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
| >PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands | Back alignment and domain information |
|---|
| >KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd04475 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
| >PF13696 zf-CCHC_2: Zinc knuckle | Back alignment and domain information |
|---|
| >cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
| >KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP) | Back alignment and domain information |
|---|
| >KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF13696 zf-CCHC_2: Zinc knuckle | Back alignment and domain information |
|---|
| >cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1) | Back alignment and domain information |
|---|
| >cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
| >PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands | Back alignment and domain information |
|---|
| >smart00343 ZnF_C2HC zinc finger | Back alignment and domain information |
|---|
| >KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
| >PF13917 zf-CCHC_3: Zinc knuckle | Back alignment and domain information |
|---|
| >cd04481 RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
| >KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG | Back alignment and domain information |
|---|
| >cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit | Back alignment and domain information |
|---|
| >PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A | Back alignment and domain information |
|---|
| >PF15489 CTC1: CST, telomere maintenance, complex subunit CTC1 | Back alignment and domain information |
|---|
| >cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
| >cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE) | Back alignment and domain information |
|---|
| >PF13917 zf-CCHC_3: Zinc knuckle | Back alignment and domain information |
|---|
| >smart00343 ZnF_C2HC zinc finger | Back alignment and domain information |
|---|
| >PF11325 DUF3127: Domain of unknown function (DUF3127); InterPro: IPR021474 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
| >cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE) | Back alignment and domain information |
|---|
| >cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit | Back alignment and domain information |
|---|
| >PF15072 DUF4539: Domain of unknown function (DUF4539) | Back alignment and domain information |
|---|
| >KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
| >PTZ00401 aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK05813 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit | Back alignment and domain information |
|---|
| >cd04495 BRCA2DBD_OB3 BRCA2DBD_OB3: A subfamily of OB folds corresponding to the third OB fold (OB3) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD | Back alignment and domain information |
|---|
| >COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
| >PRK06751 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1) | Back alignment and domain information |
|---|
| >PRK02801 primosomal replication protein N; Provisional | Back alignment and domain information |
|---|
| >PRK05733 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
| >PF02765 POT1: Telomeric single stranded DNA binding POT1/CDC13; InterPro: IPR011564 This entry represents a domain that binds single stranded telomeric DNA and adopts an OB fold [] | Back alignment and domain information |
|---|
| >PF06075 DUF936: Plant protein of unknown function (DUF936); InterPro: IPR010341 This family consists of several hypothetical proteins from plants | Back alignment and domain information |
|---|
| >KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1) | Back alignment and domain information |
|---|
| >PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A | Back alignment and domain information |
|---|
| >PRK09010 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK13732 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
| >PF09103 BRCA-2_OB1: BRCA2, oligonucleotide/oligosaccharide-binding, domain 1; InterPro: IPR015187 This domain assumes an OB fold, which consists of a highly curved five-stranded beta-sheet that closes on itself to form a beta-barrel | Back alignment and domain information |
|---|
| >cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
| >cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit | Back alignment and domain information |
|---|
| >PF15288 zf-CCHC_6: Zinc knuckle | Back alignment and domain information |
|---|
| >COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
| >PRK13480 3'-5' exoribonuclease YhaM; Provisional | Back alignment and domain information |
|---|
| >PF09104 BRCA-2_OB3: BRCA2, oligonucleotide/oligosaccharide-binding, domain 3; InterPro: IPR015188 This domain assumes an OB fold, which consists of a highly curved five-stranded beta-sheet that closes on itself to form a beta-barrel | Back alignment and domain information |
|---|
| >PRK07772 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd04493 BRCA2DBD_OB1 BRCA2DBD_OB1: A subfamily of OB folds corresponding to the first OB fold (OB1) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD | Back alignment and domain information |
|---|
| >PF14392 zf-CCHC_4: Zinc knuckle | Back alignment and domain information |
|---|
| >PF14392 zf-CCHC_4: Zinc knuckle | Back alignment and domain information |
|---|
| >PLN02850 aspartate-tRNA ligase | Back alignment and domain information |
|---|
| >KOG4757 consensus Predicted telomere binding protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0851 consensus Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF15288 zf-CCHC_6: Zinc knuckle | Back alignment and domain information |
|---|
| >cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 834 | ||||
| 4gop_C | 444 | Structure And Conformational Change Of A Replicatio | 1e-81 | ||
| 1fgu_A | 252 | Ssdna-Binding Domain Of The Large Subunit Of Replic | 1e-54 | ||
| 1jmc_A | 246 | Single Stranded Dna-Binding Domain Of Human Replica | 2e-53 | ||
| 1l1o_C | 181 | Structure Of The Human Replication Protein A (Rpa) | 8e-31 | ||
| 1ynx_A | 114 | Solution Structure Of Dna Binding Domain A (Dbd-A) | 2e-22 |
| >pdb|4GOP|C Chain C, Structure And Conformational Change Of A Replication Protein A Heterotrimer Bound To Ssdna Length = 444 | Back alignment and structure |
|
| >pdb|1FGU|A Chain A, Ssdna-Binding Domain Of The Large Subunit Of Replication Protein A Length = 252 | Back alignment and structure |
| >pdb|1JMC|A Chain A, Single Stranded Dna-Binding Domain Of Human Replication Protein A Bound To Single Stranded Dna, Rpa70 Subunit, Residues 183-420 Length = 246 | Back alignment and structure |
| >pdb|1L1O|C Chain C, Structure Of The Human Replication Protein A (Rpa) Trimerization Core Length = 181 | Back alignment and structure |
| >pdb|1YNX|A Chain A, Solution Structure Of Dna Binding Domain A (Dbd-A) Of S.Cerevisiae Replication Protein A (Rpa) Length = 114 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A Length = 246 | Back alignment and structure |
|---|
Score = 231 bits (590), Expect = 2e-70
Identities = 100/254 (39%), Positives = 148/254 (58%), Gaps = 11/254 (4%)
Query: 213 SEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVT 272
S + S+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D GEIR T
Sbjct: 2 SHMQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDES-GEIRAT 60
Query: 273 CFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASI 332
FN D+F+ +E K+Y S+G+LK A K F + ND E+ + + V C DD +
Sbjct: 61 AFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCE-DDHHL 119
Query: 333 PRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRS 391
P QF F I+D+E +S+VD+IG+ + R N E KR ++L D SG+
Sbjct: 120 PTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKV 179
Query: 392 VELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPE 451
V TLWG + D P+LA+K RVSDF G+ + +S++ + PD PE
Sbjct: 180 VTATLWGEDADK--------FDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPE 231
Query: 452 AHRLKEWFEKEGKN 465
A++L+ WF+ EG+
Sbjct: 232 AYKLRGWFDAEGQA 245
|
| >1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3 Length = 181 | Back alignment and structure |
|---|
| >1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} Length = 114 | Back alignment and structure |
|---|
| >2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A Length = 123 | Back alignment and structure |
|---|
| >1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 Length = 119 | Back alignment and structure |
|---|
| >1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 Length = 119 | Back alignment and structure |
|---|
| >2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} Length = 115 | Back alignment and structure |
|---|
| >2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} Length = 115 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae} Length = 124 | Back alignment and structure |
|---|
| >2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae} Length = 124 | Back alignment and structure |
|---|
| >2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae} Length = 124 | Back alignment and structure |
|---|
| >1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A Length = 60 | Back alignment and structure |
|---|
| >1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A Length = 60 | Back alignment and structure |
|---|
| >2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus} Length = 61 | Back alignment and structure |
|---|
| >3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Length = 83 | Back alignment and structure |
|---|
| >3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} Length = 105 | Back alignment and structure |
|---|
| >3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} Length = 105 | Back alignment and structure |
|---|
| >3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A Length = 97 | Back alignment and structure |
|---|
| >2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 63 | Back alignment and structure |
|---|
| >2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 834 | |||
| 4gop_C | 444 | Putative uncharacterized protein; OB fold, ssDNA b | 100.0 | |
| 1jmc_A | 246 | Protein (replication protein A (RPA)); human ssDNA | 100.0 | |
| 1l1o_C | 181 | Replication protein A 70 kDa DNA-binding subunit; | 100.0 | |
| 3u50_C | 172 | Telomerase-associated protein 82; TEB1, processivi | 100.0 | |
| 1ynx_A | 114 | Replication factor-A protein 1; canonical OB fold, | 99.96 | |
| 2b29_A | 123 | Replication protein A 70 kDa DNA-binding subunit; | 99.93 | |
| 3dm3_A | 105 | Replication factor A; probably plays AN essential | 99.39 | |
| 1o7i_A | 119 | SSB, SSO2364, single stranded DNA binding protein; | 99.38 | |
| 2k50_A | 115 | Replication factor A related protein; uncharacteri | 99.3 | |
| 3e0e_A | 97 | Replication protein A; structural genomics, PSI-2, | 99.3 | |
| 1o7i_A | 119 | SSB, SSO2364, single stranded DNA binding protein; | 99.26 | |
| 3dm3_A | 105 | Replication factor A; probably plays AN essential | 99.21 | |
| 2li8_A | 74 | Protein LIN-28 homolog A; zinc finger, micro RNA, | 99.2 | |
| 2a51_A | 39 | Nucleocapsid protein; sivlhoest, structure, NCP8, | 99.16 | |
| 2lli_A | 124 | Protein AIR2; RNA surveillance, RNA degradation, R | 99.14 | |
| 2cqf_A | 63 | RNA-binding protein LIN-28; CCHC zinc-finger, stru | 99.13 | |
| 3nyb_B | 83 | Protein AIR2; polya RNA polymerase, zinc knuckle p | 99.12 | |
| 2bl6_A | 37 | Nucleocapsid protein P11; lentivirus, polyprotein, | 99.08 | |
| 2k50_A | 115 | Replication factor A related protein; uncharacteri | 99.07 | |
| 2lli_A | 124 | Protein AIR2; RNA surveillance, RNA degradation, R | 99.07 | |
| 1cl4_A | 60 | Protein (GAG polyprotein); nucleocapsid protein, R | 99.05 | |
| 2ec7_A | 49 | GAG polyprotein (PR55GAG); nucleocapsid protein, H | 99.05 | |
| 2ihx_A | 61 | Nucleocapsid (NC) protein; protein-RNA complex, vi | 99.04 | |
| 1a1t_A | 55 | Nucleocapsid protein; stem-loop RNA, viral protein | 98.98 | |
| 3e0e_A | 97 | Replication protein A; structural genomics, PSI-2, | 98.93 | |
| 2li8_A | 74 | Protein LIN-28 homolog A; zinc finger, micro RNA, | 98.93 | |
| 2k75_A | 106 | Uncharacterized protein TA0387; closed beta barrel | 98.9 | |
| 3ts2_A | 148 | Protein LIN-28 homolog A; microrna biogenesis, pro | 98.82 | |
| 2k75_A | 106 | Uncharacterized protein TA0387; closed beta barrel | 98.79 | |
| 1wjj_A | 145 | Hypothetical protein F20O9.120; DNA-binding protei | 98.79 | |
| 2cqf_A | 63 | RNA-binding protein LIN-28; CCHC zinc-finger, stru | 98.63 | |
| 3nyb_B | 83 | Protein AIR2; polya RNA polymerase, zinc knuckle p | 98.59 | |
| 2a51_A | 39 | Nucleocapsid protein; sivlhoest, structure, NCP8, | 98.59 | |
| 2ec7_A | 49 | GAG polyprotein (PR55GAG); nucleocapsid protein, H | 98.57 | |
| 2bl6_A | 37 | Nucleocapsid protein P11; lentivirus, polyprotein, | 98.54 | |
| 1cl4_A | 60 | Protein (GAG polyprotein); nucleocapsid protein, R | 98.51 | |
| 1xjv_A | 294 | Protection of telomeres 1; protein-DNA complex, si | 98.45 | |
| 1a1t_A | 55 | Nucleocapsid protein; stem-loop RNA, viral protein | 98.42 | |
| 1jmc_A | 246 | Protein (replication protein A (RPA)); human ssDNA | 98.42 | |
| 2kbn_A | 109 | Conserved protein; nucleic acid binding protein, b | 98.42 | |
| 2ihx_A | 61 | Nucleocapsid (NC) protein; protein-RNA complex, vi | 98.41 | |
| 1wjj_A | 145 | Hypothetical protein F20O9.120; DNA-binding protei | 98.36 | |
| 3ts2_A | 148 | Protein LIN-28 homolog A; microrna biogenesis, pro | 98.35 | |
| 2kbn_A | 109 | Conserved protein; nucleic acid binding protein, b | 98.24 | |
| 1xjv_A | 294 | Protection of telomeres 1; protein-DNA complex, si | 98.14 | |
| 1jb7_A | 495 | Telomere-binding protein alpha subunit; DNA-protei | 98.13 | |
| 4gop_C | 444 | Putative uncharacterized protein; OB fold, ssDNA b | 98.07 | |
| 1dsq_A | 26 | Nucleic acid binding protein P14; CCHC type zinc f | 98.05 | |
| 1ynx_A | 114 | Replication factor-A protein 1; canonical OB fold, | 97.96 | |
| 2ysa_A | 55 | Retinoblastoma-binding protein 6; zinc finger, CCH | 97.93 | |
| 1qzg_A | 187 | Protection of telomeres protein 1; protrein-DNA co | 97.81 | |
| 1a6b_B | 40 | Momulv, zinc finger protein NCP10; nucleocapsid pr | 97.75 | |
| 3u58_A | 213 | Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1 | 97.54 | |
| 1dsq_A | 26 | Nucleic acid binding protein P14; CCHC type zinc f | 97.54 | |
| 1nc8_A | 29 | Nucleocapsid protein; HIV-2, RNA recognition, zinc | 97.52 | |
| 1u6p_A | 56 | GAG polyprotein; MLV, A-minor K-turn, stem loop, b | 97.51 | |
| 1a6b_B | 40 | Momulv, zinc finger protein NCP10; nucleocapsid pr | 97.4 | |
| 1miu_A | 738 | BRCA2, breast cancer type 2 susceptibility protein | 97.37 | |
| 1jb7_A | 495 | Telomere-binding protein alpha subunit; DNA-protei | 97.25 | |
| 1u6p_A | 56 | GAG polyprotein; MLV, A-minor K-turn, stem loop, b | 97.21 | |
| 1nc8_A | 29 | Nucleocapsid protein; HIV-2, RNA recognition, zinc | 97.18 | |
| 3u4v_A | 117 | Telomerase-associated protein 82; TEB1, processivi | 97.03 | |
| 2ysa_A | 55 | Retinoblastoma-binding protein 6; zinc finger, CCH | 96.65 | |
| 1se8_A | 301 | Single-strand binding protein; DNA binding protein | 95.01 | |
| 2fxq_A | 264 | Single-strand binding protein; strand beta-sheet e | 93.63 | |
| 3mxn_A | 157 | RECQ-mediated genome instability protein 1; bloom | 93.57 | |
| 4hik_A | 143 | Protection of telomeres protein 1; specificity, pl | 93.52 | |
| 3u4z_A | 109 | Telomerase-associated protein 82; TEB1, processivi | 92.92 | |
| 3ebe_A | 200 | Protein MCM10 homolog; OB-fold, zinc finger, CCCH, | 92.38 | |
| 4gop_B | 136 | Putative uncharacterized protein; OB fold, ssDNA b | 92.26 | |
| 3kdf_D | 132 | Replication protein A 32 kDa subunit; wheat GERM c | 91.93 | |
| 4dni_A | 257 | Fusion protein of RNA-editing complex proteins MP | 89.92 | |
| 2pi2_A | 270 | Replication protein A 32 kDa subunit; FULL-length | 88.7 | |
| 3en2_A | 101 | Probable primosomal replication protein N; PRIB RS | 88.27 | |
| 3eiv_A | 199 | Single-stranded DNA-binding protein 2; DNA damage, | 87.12 | |
| 3rn5_A | 208 | Interferon-inducible protein AIM2; OB fold, DNA bi | 86.28 | |
| 1txy_A | 104 | Primosomal replication protein N; OB fold, dimer, | 86.14 | |
| 3fhw_A | 115 | Primosomal replication protein N; PRIB BPR162 X-RA | 85.91 | |
| 3kf6_A | 159 | Protein STN1; OB fold, chromosomal protein, DNA-bi | 85.65 | |
| 3u58_A | 213 | Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1 | 84.91 | |
| 1qzg_A | 187 | Protection of telomeres protein 1; protrein-DNA co | 82.94 | |
| 3tqy_A | 158 | Single-stranded DNA-binding protein; DNA replicati | 82.89 | |
| 2vw9_A | 134 | Single-stranded DNA binding protein; DNA replicati | 80.59 |
| >4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-91 Score=798.72 Aligned_cols=433 Identities=36% Similarity=0.690 Sum_probs=405.2
Q ss_pred CceeccccCCCCCceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHHHhhhhccCcCcEEEEeeeE
Q 003281 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGS 297 (834)
Q Consensus 218 ~~~pI~~L~p~~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~d~f~~~l~eG~vy~is~~~ 297 (834)
+++||++|+||+++|+|+|||++||++|+|.+++++|++|+|+|+|++| +|+|++|++++++|+++|+||+||+|++|+
T Consensus 2 ~~~~I~~L~p~~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l~eG~vy~Is~~~ 80 (444)
T 4gop_C 2 PIYPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG-EIKATGFNDAVDRFYPLLQENHVYLISKAR 80 (444)
T ss_dssp -CCCSTTCCTTCCSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC-EEEEEEETHHHHHHTTTCCTTCEEEEESCE
T ss_pred CceeHHHCCCCCcceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC-EEEEEEeHHHHHHHHHheecCCEEEEcCCE
Confidence 5899999999999999999999999999999999999999999999875 999999999999999999999999999999
Q ss_pred EecCCcccccCCCeEEEEEccCccEEEecCCCCCCccccccccccccccccCCCceeeEEEEEEEecCCeeEEcc-CCce
Q 003281 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRK-NGTE 376 (834)
Q Consensus 298 V~~a~~~~~~~~~~yeI~f~~~T~I~~~~d~~~~iP~~~~~f~~i~dI~~~~~~~~vDVIGvV~~V~~~~~i~~k-~g~~ 376 (834)
|++++++|++++|+|||.|+.+|+|+++.+ +..||...|+|++|+||.+++.+.+|||||+|++|+++.+|++| +|++
T Consensus 81 V~~~~~~y~~~~~~~ei~~~~~T~V~~~~d-~~~iP~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~i~~k~~g~~ 159 (444)
T 4gop_C 81 VNIAKKQFSNLQNEYEITFENSTEIEECTD-ATDVPEVKYEFVRINELESVEANQQCDVIGILDSYGELSEIVSKASQRP 159 (444)
T ss_dssp EEECCGGGCSCCCSEEEEECTTCEEEECSC-CSSSCCCCCCBCCGGGGGGSCSSCCCBEEEEEEEECCCEEECCTTTCSC
T ss_pred EEecCCccccCCCCEEEEEcCCcEEEEccC-cccCcceeecccCHHHHhccCCCCceEEEEEEEEcCCcEEEEEccCCce
Confidence 999999999999999999999999999965 46899999999999999998889999999999999999999988 7999
Q ss_pred eeEEEEEEeccCCcEEEEEEcCCccchhhhhhhhcccCCCccEEEEEEEEEeecCCeEEEeecceEEEEcCCchHHHHHH
Q 003281 377 TQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456 (834)
Q Consensus 377 ~~kr~i~L~D~s~~si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv~ik~~rV~~f~G~~Ls~~~~S~i~inPd~pe~~~l~ 456 (834)
..+|+|+|+|+|+.+|+|||||++|+.+... .....++||+|+++||++|+|++||+.++|+|++|||+||+++|+
T Consensus 160 ~~kr~i~L~D~sg~~i~~tLWg~~A~~f~~~----~~~~~~~VV~i~~~kV~~f~G~~ls~~~~s~i~inPdipea~~l~ 235 (444)
T 4gop_C 160 VQKRELTLVDQGNRSVKLTLWGKTAETFPTN----AGVDEKPVLAFKGVKVGDFGGRSLSMFSSSTMLINPDITESHVLR 235 (444)
T ss_dssp EEEEEEEEECTTCBEEEEEEEHHHHHTSTTS----TTSSSCCEEEEESCEEECTTSSEEECCTTCEEEESCSSHHHHHHH
T ss_pred eeEEEEEEEeCCCCEEEEEEEhhhhhhhhhh----hccCCCCEEEEEeEEEeecCCeEEeccccceEEECCCCHHHHHHH
Confidence 9999999999999999999999999875421 113568999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccceeeecccc---------ccCCccchhccHhhhhhcCCCCCCCCceEEEEEEEEEEecCCeeeeCCCCCc
Q 003281 457 EWFEKEGKNTQSVSISRDS---------LSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMI 527 (834)
Q Consensus 457 ~w~~~~g~~~~~~sls~~~---------~~~~~~~~~ktI~ei~~~~lg~~~k~~~~~v~atI~~I~~d~~~Y~aC~~~~ 527 (834)
.||+++|.+..+.+++... .+.++...+|||+||+++++|.+++++||+|+|+|++|+.++|||+|||.+
T Consensus 236 ~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kti~~i~~~~~g~~~~~~~~~v~atI~~i~~~~~~Y~aC~~~- 314 (444)
T 4gop_C 236 GWYDNDGAHAQFQPYTNGGVGGGAMGGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASE- 314 (444)
T ss_dssp HHHHHHTTTSCCBCCCCCC---------CTTCCSSEECCHHHHHHTTTTSSSSCEEEEEEEEEEEECCTTCEEEECCST-
T ss_pred HHHHcCCCCcccccccccccccccccccccccccccceeHHHHhhhccCCCCCCcEEEEEEEEEEEcCCceEEccCCcc-
Confidence 9999999988888877543 112345678999999999999999999999999999999999999999943
Q ss_pred CCCCcCcccccCCCCceecCCCCCccccceEEEEEEEEEEeCCCeEEEEEehHHHHHHhCCCHHHHHhhhccCCChhHHH
Q 003281 528 GDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFG 607 (834)
Q Consensus 528 ~~~~C~KKv~~~~dg~~~CekC~~~~~~~~~ry~l~~~i~D~Tg~~~~~~F~e~ae~llG~sA~el~~l~~ee~d~~~~~ 607 (834)
.|+|||++..+|.|+|++|++.+++|+|||+|++.|+|+||++|+++|++.|++|||++|+||.+++ ++|+..|+
T Consensus 315 ---~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~llG~sa~el~~~~--~~d~~~~~ 389 (444)
T 4gop_C 315 ---GCNKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLIGMSAGELHKLR--EESESEFS 389 (444)
T ss_dssp ---TCCCBEEECTTSCEEETTTTEEESSCEEEECEEEEEEETTEEEEEEECHHHHHHHTTSCHHHHHHHH--TTCHHHHH
T ss_pred ---cCCCccccCCCccEECCCCCCcCccccEEEEEEEEEEeCCCCEEEEEehHHHHHHcCCCHHHHHHHH--hcChHHHH
Confidence 4999998878899999999999999999999999999999999999999999999999999999998 67899999
Q ss_pred HHHHHhcCceEEEEEEEeecccCccceEEEEEEEeeecChHHHHHHHHHHHHhhc
Q 003281 608 EVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLK 662 (834)
Q Consensus 608 ~~l~~~~~k~~~f~l~~k~~~ynde~rvk~~v~~~~~vd~~~e~~~Ll~~i~~~~ 662 (834)
++|++++|++|+|+|++++++|+|+.|+|++|++++|+||++|+++||++|++|+
T Consensus 390 ~~~~~~~~k~~~f~~~~k~~~y~~~~r~~~~v~~~~~~d~~~~~~~l~~~i~~~~ 444 (444)
T 4gop_C 390 AALHRAANRMYMFNCRAKMDTFNDTARVRYTISRAAPVDFAKAGMELVDAIRAYM 444 (444)
T ss_dssp HHHHTTSSCEEEEEEEEEEEEETTEEEEEEEEEEEEECCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhCcEEEEEEEEEeeeeCCeeEEEEEEEEeeeCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999985
|
| >1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A | Back alignment and structure |
|---|
| >1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3 | Back alignment and structure |
|---|
| >1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A | Back alignment and structure |
|---|
| >3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 | Back alignment and structure |
|---|
| >2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
| >3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A | Back alignment and structure |
|---|
| >1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 | Back alignment and structure |
|---|
| >3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic} | Back alignment and structure |
|---|
| >2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus} | Back alignment and structure |
|---|
| >2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
| >2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A | Back alignment and structure |
|---|
| >2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1 | Back alignment and structure |
|---|
| >2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus} | Back alignment and structure |
|---|
| >1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A | Back alignment and structure |
|---|
| >3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A | Back alignment and structure |
|---|
| >2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} | Back alignment and structure |
|---|
| >3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A* | Back alignment and structure |
|---|
| >2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} | Back alignment and structure |
|---|
| >1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3 | Back alignment and structure |
|---|
| >2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic} | Back alignment and structure |
|---|
| >2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1 | Back alignment and structure |
|---|
| >2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus} | Back alignment and structure |
|---|
| >1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A | Back alignment and structure |
|---|
| >1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A | Back alignment and structure |
|---|
| >1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A | Back alignment and structure |
|---|
| >1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A | Back alignment and structure |
|---|
| >2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A | Back alignment and structure |
|---|
| >2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus} | Back alignment and structure |
|---|
| >1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3 | Back alignment and structure |
|---|
| >3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A* | Back alignment and structure |
|---|
| >2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A | Back alignment and structure |
|---|
| >1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A | Back alignment and structure |
|---|
| >1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A | Back alignment and structure |
|---|
| >4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
| >1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A | Back alignment and structure |
|---|
| >1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1 | Back alignment and structure |
|---|
| >3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila} | Back alignment and structure |
|---|
| >1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A | Back alignment and structure |
|---|
| >1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A | Back alignment and structure |
|---|
| >1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1 | Back alignment and structure |
|---|
| >1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A | Back alignment and structure |
|---|
| >1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A | Back alignment and structure |
|---|
| >1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A | Back alignment and structure |
|---|
| >1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A | Back alignment and structure |
|---|
| >3u4v_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 1.80A {Tetrahymena thermophila} | Back alignment and structure |
|---|
| >2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3 | Back alignment and structure |
|---|
| >2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A | Back alignment and structure |
|---|
| >3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A | Back alignment and structure |
|---|
| >4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A* | Back alignment and structure |
|---|
| >3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila} | Back alignment and structure |
|---|
| >3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A | Back alignment and structure |
|---|
| >4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
| >3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B | Back alignment and structure |
|---|
| >4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei} | Back alignment and structure |
|---|
| >2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A | Back alignment and structure |
|---|
| >3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum} | Back alignment and structure |
|---|
| >3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor} | Back alignment and structure |
|---|
| >3rn5_A Interferon-inducible protein AIM2; OB fold, DNA binding, cytosolic, immune system-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 3rn2_A* | Back alignment and structure |
|---|
| >1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A | Back alignment and structure |
|---|
| >3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A | Back alignment and structure |
|---|
| >3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila} | Back alignment and structure |
|---|
| >1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A | Back alignment and structure |
|---|
| >3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
| >2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 834 | ||||
| d1l1oc_ | 178 | b.40.4.3 (C:) Replication protein A 70 KDa subunit | 5e-70 | |
| d1jmca2 | 122 | b.40.4.3 (A:299-420) Replication protein A 70 KDa | 1e-41 | |
| d1jmca1 | 116 | b.40.4.3 (A:183-298) Replication protein A 70 KDa | 6e-40 | |
| d2b3ga1 | 112 | b.40.4.3 (A:3-114) Replication protein A 70 KDa su | 9e-24 | |
| d1o7ia_ | 115 | b.40.4.3 (A:) Archaeal ssDNA-binding protein {Arch | 5e-18 | |
| d2exfa1 | 42 | g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunod | 7e-07 | |
| d2exfa1 | 42 | g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunod | 4e-04 |
| >d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Length = 178 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 70 KDa subunit (RPA70) species: Human (Homo sapiens) [TaxId: 9606]
Score = 226 bits (577), Expect = 5e-70
Identities = 68/178 (38%), Positives = 107/178 (60%), Gaps = 6/178 (3%)
Query: 484 RKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGR 543
KT+ ++K E LG +KPD+ + AT+VY++ +N Y ACP + CNKKV++ +G
Sbjct: 4 WKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGL 59
Query: 544 WHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQND 603
+ C++CD YR IL I D WVT FQE AE I+G +A L LK D+N+
Sbjct: 60 YRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELK--DKNE 117
Query: 604 EKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
+ F EV +NA F ++F+++VK ET++DE R+K+TV+ + +Y R ++ + +
Sbjct: 118 QAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRRS 175
|
| >d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
| >d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Length = 116 | Back information, alignment and structure |
|---|
| >d2b3ga1 b.40.4.3 (A:3-114) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Length = 112 | Back information, alignment and structure |
|---|
| >d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 115 | Back information, alignment and structure |
|---|
| >d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]} Length = 42 | Back information, alignment and structure |
|---|
| >d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]} Length = 42 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 834 | |||
| d1l1oc_ | 178 | Replication protein A 70 KDa subunit (RPA70) {Huma | 100.0 | |
| d1jmca2 | 122 | Replication protein A 70 KDa subunit (RPA70) {Huma | 99.95 | |
| d1jmca1 | 116 | Replication protein A 70 KDa subunit (RPA70) {Huma | 99.95 | |
| d2b3ga1 | 112 | Replication protein A 70 KDa subunit (RPA70) {Huma | 99.92 | |
| d1o7ia_ | 115 | Archaeal ssDNA-binding protein {Archaeon Sulfolobu | 99.39 | |
| d2exfa1 | 42 | HIV nucleocapsid {Human immunodeficiency virus typ | 99.18 | |
| d1o7ia_ | 115 | Archaeal ssDNA-binding protein {Archaeon Sulfolobu | 98.83 | |
| d1wjja_ | 145 | Hypothetical protein At4g28440 (F20O9.120) {Thale | 98.66 | |
| d2exfa1 | 42 | HIV nucleocapsid {Human immunodeficiency virus typ | 98.59 | |
| d1wjja_ | 145 | Hypothetical protein At4g28440 (F20O9.120) {Thale | 98.48 | |
| d1xjva1 | 140 | Protection of telomeres protein 1, Pot1 {Human (Ho | 98.33 | |
| d1jmca1 | 116 | Replication protein A 70 KDa subunit (RPA70) {Huma | 98.16 | |
| d1nc8a_ | 29 | HIV nucleocapsid {Human immunodeficiency virus typ | 97.73 | |
| d1jb7a1 | 169 | Telomere end binding protein alpha subunit {Oxytri | 97.62 | |
| d1nc8a_ | 29 | HIV nucleocapsid {Human immunodeficiency virus typ | 97.62 | |
| d1qzga_ | 170 | Protection of telomeres protein 1, Pot1 {Fission y | 97.61 | |
| d1jmca2 | 122 | Replication protein A 70 KDa subunit (RPA70) {Huma | 97.53 | |
| d1dsqa_ | 26 | Nucleic acid binding protein p14 {Mouse mammary tu | 96.86 | |
| d1dsqa_ | 26 | Nucleic acid binding protein p14 {Mouse mammary tu | 96.28 | |
| d1a6bb_ | 40 | Zinc finger protein ncp10 {Moloney murine leukemia | 96.02 | |
| d1se8a_ | 231 | ssDNA-binding protein {Deinococcus radiodurans [Ta | 95.86 | |
| d1xjva1 | 140 | Protection of telomeres protein 1, Pot1 {Human (Ho | 94.86 | |
| d1a6bb_ | 40 | Zinc finger protein ncp10 {Moloney murine leukemia | 94.74 | |
| d1jb7a1 | 169 | Telomere end binding protein alpha subunit {Oxytri | 90.97 | |
| d1cl4a_ | 32 | Nucleocapsid protein from mason-pfizer monkey viru | 90.58 | |
| d1dsva_ | 31 | Nucleic acid binding protein p14 {Mouse mammary tu | 89.55 | |
| d2pi2a1 | 128 | Replication protein A 32 KDa subunit (RPA32) fragm | 89.01 | |
| d1xjva2 | 151 | Protection of telomeres protein 1, Pot1 {Human (Ho | 88.7 | |
| d1eova1 | 134 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 88.34 | |
| d1v1qa_ | 111 | Primosomal replication protein N, PriB {Escherichi | 87.85 | |
| d1iyjb5 | 138 | OB-fold domains of BRCA2 {Rat (Rattus norvegicus) | 85.28 | |
| d1n9wa1 | 93 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 85.22 | |
| d1e1oa1 | 143 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 84.98 | |
| d1gm5a2 | 180 | RecG "wedge" domain {Thermotoga maritima [TaxId: 2 | 82.18 | |
| d1qvca_ | 145 | ssDNA-binding protein {Escherichia coli [TaxId: 56 | 80.93 |
| >d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 70 KDa subunit (RPA70) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.4e-44 Score=354.59 Aligned_cols=175 Identities=39% Similarity=0.719 Sum_probs=163.5
Q ss_pred chhccHhhhhhcCCCCCCCCceEEEEEEEEEEecCCeeeeCCCCCcCCCCcCcccccCCCCceecCCCCCccccceEEEE
Q 003281 482 DIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYI 561 (834)
Q Consensus 482 ~~~ktI~ei~~~~lg~~~k~~~~~v~atI~~I~~d~~~Y~aC~~~~~~~~C~KKv~~~~dg~~~CekC~~~~~~~~~ry~ 561 (834)
.++|||+||++++||++++||||+|+|+|+.|+.++|||+|||++ .|+|||++..+|.|+|++|++.+++|+|||+
T Consensus 2 ~~~kti~~i~~e~lg~~~k~d~f~v~a~I~~i~~~~~~Y~aCp~~----~C~KKv~~~~~g~~~C~kC~~~~~~~~~ry~ 77 (178)
T d1l1oc_ 2 TNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQ----DCNKKVIDQQNGLYRCEKCDTEFPNFKYRMI 77 (178)
T ss_dssp CCBCCHHHHHHHTTTSSSSCEEEEEEEEEEEECCSTTEEEBCCST----TCCCBCEEETTTEEEETTTTEEESSCCEEEE
T ss_pred CccccHHHHHhccCCCCCCCCEEEEEEEEEEEeCCCeEEcCCCCc----ccCCccccCCCCcEECCCCCCcCCCceEEEE
Confidence 368999999999999999999999999999999999999999954 5999998888899999999999999999999
Q ss_pred EEEEEEeCCCeEEEEEehHHHHHHhCCCHHHHHhhhccCCChhHHHHHHHHhcCceEEEEEEEeecccCccceEEEEEEE
Q 003281 562 LQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVK 641 (834)
Q Consensus 562 l~~~i~D~Tg~~~~~~F~e~ae~llG~sA~el~~l~~ee~d~~~~~~~l~~~~~k~~~f~l~~k~~~ynde~rvk~~v~~ 641 (834)
|++.|+|+||++|+++|++.|++|||++|+||.+++ ++|+..|+++++++.|++|.|++++++++|||+.|+|++|++
T Consensus 78 l~~~i~D~Tg~~~~~~F~~~a~~l~G~sA~EL~~~~--~~d~~~~~~~~~~l~~k~~~f~~~~k~~~yn~e~r~k~~v~~ 155 (178)
T d1l1oc_ 78 LSVNIADFQENQWVTCFQESAEAILGQNAAYLGELK--DKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMD 155 (178)
T ss_dssp EEEEEECSSCEEEEEEEHHHHHHHHSSCHHHHHHHT--TSCHHHHHHHHHHTTTCEEEEEEEEECCCC-----CEEEEEE
T ss_pred EEEEEecCCCCEEEEEehhhHHHHhCCCHHHHHHHh--hcCHHHHHHHHHHhcCcEEEEEEEEEecccCCeeEEEEEEEE
Confidence 999999999999999999999999999999999998 678999999999999999999999999999999999999999
Q ss_pred eeecChHHHHHHHHHHHHhhc
Q 003281 642 AERYNYSSETRFILDLMDKLK 662 (834)
Q Consensus 642 ~~~vd~~~e~~~Ll~~i~~~~ 662 (834)
++|+||++|+++|++.|++|.
T Consensus 156 i~pvd~~~e~~~L~~~I~~~~ 176 (178)
T d1l1oc_ 156 VKPVDYREYGRRLVMSIRRSA 176 (178)
T ss_dssp EEECCHHHHHHHHHHHHHHHH
T ss_pred eEeCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999885
|
| >d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2b3ga1 b.40.4.3 (A:3-114) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]} | Back information, alignment and structure |
|---|
| >d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1wjja_ b.40.4.3 (A:) Hypothetical protein At4g28440 (F20O9.120) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]} | Back information, alignment and structure |
|---|
| >d1wjja_ b.40.4.3 (A:) Hypothetical protein At4g28440 (F20O9.120) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]} | Back information, alignment and structure |
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| >d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} | Back information, alignment and structure |
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| >d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]} | Back information, alignment and structure |
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| >d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
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| >d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]} | Back information, alignment and structure |
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| >d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
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| >d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]} | Back information, alignment and structure |
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| >d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} | Back information, alignment and structure |
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| >d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]} | Back information, alignment and structure |
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| >d1dsva_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]} | Back information, alignment and structure |
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| >d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1v1qa_ b.40.4.3 (A:) Primosomal replication protein N, PriB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1iyjb5 b.40.4.3 (B:2980-3117) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
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| >d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
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| >d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1qvca_ b.40.4.3 (A:) ssDNA-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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